Query 007178
Match_columns 614
No_of_seqs 405 out of 3447
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 20:00:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007178.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007178hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01257 rim_protein retinal- 100.0 7.5E-94 1.6E-98 873.4 68.8 577 12-608 650-1281(2272)
2 TIGR01257 rim_protein retinal- 100.0 6.7E-85 1.5E-89 795.1 63.4 556 18-614 1683-2259(2272)
3 KOG0059 Lipid exporter ABCA1 a 100.0 4.1E-85 8.9E-90 767.1 44.0 583 1-612 283-883 (885)
4 COG1126 GlnQ ABC-type polar am 100.0 4.4E-59 9.6E-64 446.3 25.4 222 291-520 2-227 (240)
5 COG1125 OpuBA ABC-type proline 100.0 5.9E-59 1.3E-63 453.6 21.1 227 291-523 1-230 (309)
6 COG4152 ABC-type uncharacteriz 100.0 8.2E-58 1.8E-62 442.9 27.6 295 291-607 2-298 (300)
7 COG1131 CcmA ABC-type multidru 100.0 5.8E-57 1.3E-61 468.1 34.7 287 291-605 4-292 (293)
8 PRK13537 nodulation ABC transp 100.0 2.1E-56 4.5E-61 467.5 38.8 299 288-607 4-303 (306)
9 COG4555 NatA ABC-type Na+ tran 100.0 1.6E-58 3.4E-63 436.5 18.6 224 291-521 1-225 (245)
10 COG1135 AbcC ABC-type metal io 100.0 2E-57 4.3E-62 455.4 23.5 226 291-519 1-232 (339)
11 TIGR03522 GldA_ABC_ATP gliding 100.0 8.9E-55 1.9E-59 454.6 39.8 298 291-603 2-300 (301)
12 PRK13536 nodulation factor exp 100.0 9.3E-55 2E-59 460.3 39.5 298 289-607 39-337 (340)
13 TIGR01188 drrA daunorubicin re 100.0 7E-55 1.5E-59 455.7 37.3 290 310-604 6-301 (302)
14 TIGR01288 nodI ATP-binding ABC 100.0 3.3E-53 7.1E-58 443.3 38.8 297 290-607 3-300 (303)
15 COG1127 Ttg2A ABC-type transpo 100.0 1.5E-54 3.2E-59 421.2 23.9 224 289-519 6-236 (263)
16 COG3839 MalK ABC-type sugar tr 100.0 1.7E-53 3.6E-58 442.1 24.7 225 291-524 3-229 (338)
17 COG3842 PotA ABC-type spermidi 100.0 1.5E-53 3.2E-58 444.7 22.0 222 290-520 4-228 (352)
18 COG1137 YhbG ABC-type (unclass 100.0 3E-54 6.5E-59 407.0 14.9 221 291-519 4-229 (243)
19 COG1116 TauB ABC-type nitrate/ 100.0 9.6E-53 2.1E-57 414.0 23.2 203 291-505 3-207 (248)
20 COG3638 ABC-type phosphate/pho 100.0 3.3E-52 7.1E-57 403.7 22.4 222 290-518 2-237 (258)
21 TIGR02314 ABC_MetN D-methionin 100.0 1.3E-51 2.9E-56 435.8 29.1 224 291-518 1-230 (343)
22 COG1120 FepC ABC-type cobalami 100.0 5.6E-52 1.2E-56 415.7 23.6 219 291-517 2-227 (258)
23 COG1118 CysA ABC-type sulfate/ 100.0 3.4E-52 7.4E-57 416.6 21.0 229 291-528 2-237 (345)
24 COG2884 FtsE Predicted ATPase 100.0 6.8E-52 1.5E-56 388.5 19.9 215 291-512 1-220 (223)
25 COG1136 SalX ABC-type antimicr 100.0 5.9E-51 1.3E-55 400.9 26.7 214 291-508 1-221 (226)
26 PRK11432 fbpC ferric transport 100.0 6.1E-51 1.3E-55 432.7 28.7 222 290-520 5-228 (351)
27 TIGR03265 PhnT2 putative 2-ami 100.0 7.1E-51 1.5E-55 432.8 28.8 221 290-519 3-225 (353)
28 PRK11650 ugpC glycerol-3-phosp 100.0 7.1E-51 1.5E-55 433.3 28.4 221 291-519 3-225 (356)
29 COG0411 LivG ABC-type branched 100.0 1.1E-51 2.5E-56 403.2 20.0 222 290-519 3-240 (250)
30 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 4E-51 8.6E-56 407.6 24.0 217 290-518 3-227 (254)
31 COG1124 DppF ABC-type dipeptid 100.0 4.1E-51 8.8E-56 398.9 22.3 226 290-520 2-233 (252)
32 TIGR03258 PhnT 2-aminoethylpho 100.0 1.6E-50 3.5E-55 430.8 28.5 221 291-520 5-230 (362)
33 COG1117 PstB ABC-type phosphat 100.0 2.6E-51 5.7E-56 391.1 20.0 224 289-519 5-238 (253)
34 COG1122 CbiO ABC-type cobalt t 100.0 1E-50 2.2E-55 405.9 25.3 222 290-519 2-229 (235)
35 cd03261 ABC_Org_Solvent_Resist 100.0 2.2E-50 4.8E-55 406.9 27.2 219 292-518 1-226 (235)
36 cd03265 ABC_DrrA DrrA is the A 100.0 2.2E-50 4.8E-55 402.9 26.7 217 292-516 1-219 (220)
37 PRK09452 potA putrescine/sperm 100.0 7.2E-50 1.6E-54 427.4 28.9 223 289-520 12-236 (375)
38 cd03263 ABC_subfamily_A The AB 100.0 6.1E-50 1.3E-54 399.5 26.4 219 292-516 1-219 (220)
39 PRK10851 sulfate/thiosulfate t 100.0 7.4E-50 1.6E-54 425.0 28.4 220 291-519 2-227 (353)
40 PRK11153 metN DL-methionine tr 100.0 9.5E-50 2.1E-54 423.5 28.8 225 291-519 1-231 (343)
41 COG4175 ProV ABC-type proline/ 100.0 1.3E-50 2.8E-55 405.6 19.7 234 290-525 3-261 (386)
42 PRK11607 potG putrescine trans 100.0 1.5E-49 3.2E-54 425.6 29.3 223 289-520 17-241 (377)
43 cd03266 ABC_NatA_sodium_export 100.0 1.1E-49 2.5E-54 397.0 26.5 217 291-511 1-218 (218)
44 TIGR00960 3a0501s02 Type II (G 100.0 1E-49 2.2E-54 396.9 25.8 211 291-507 1-216 (216)
45 cd03259 ABC_Carb_Solutes_like 100.0 1E-49 2.3E-54 396.0 25.0 211 292-511 1-213 (213)
46 PRK11000 maltose/maltodextrin 100.0 1.7E-49 3.6E-54 425.1 28.5 220 291-519 3-224 (369)
47 cd03296 ABC_CysA_sulfate_impor 100.0 3.4E-49 7.3E-54 399.3 26.7 219 291-518 2-226 (239)
48 TIGR01186 proV glycine betaine 100.0 2.2E-49 4.9E-54 421.2 26.6 208 310-519 6-220 (363)
49 cd03258 ABC_MetN_methionine_tr 100.0 4E-49 8.6E-54 397.1 27.0 224 291-518 1-230 (233)
50 PRK13637 cbiO cobalt transport 100.0 7.2E-49 1.6E-53 407.4 29.6 226 291-518 2-234 (287)
51 cd03218 ABC_YhbG The ABC trans 100.0 4.5E-49 9.9E-54 396.4 27.0 218 292-517 1-221 (232)
52 cd03219 ABC_Mj1267_LivG_branch 100.0 4.3E-49 9.4E-54 397.5 26.7 219 292-518 1-232 (236)
53 PRK09536 btuD corrinoid ABC tr 100.0 8.7E-49 1.9E-53 421.6 30.5 225 291-523 3-239 (402)
54 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1E-48 2.2E-53 395.1 28.4 221 291-520 1-223 (236)
55 PRK10070 glycine betaine trans 100.0 8.3E-49 1.8E-53 421.5 29.4 228 290-519 3-255 (400)
56 cd03264 ABC_drug_resistance_li 100.0 5E-49 1.1E-53 390.5 25.6 211 292-511 1-211 (211)
57 PRK13643 cbiO cobalt transport 100.0 1.2E-48 2.7E-53 405.8 29.1 225 291-518 1-233 (288)
58 PRK13647 cbiO cobalt transport 100.0 1.3E-48 2.8E-53 403.0 28.8 220 290-516 3-225 (274)
59 PRK15079 oligopeptide ABC tran 100.0 1.3E-48 2.8E-53 412.2 29.2 232 289-521 6-254 (331)
60 cd03293 ABC_NrtD_SsuB_transpor 100.0 8.4E-49 1.8E-53 391.5 26.3 214 292-513 1-218 (220)
61 TIGR00972 3a0107s01c2 phosphat 100.0 1.6E-48 3.4E-53 396.3 28.5 221 291-518 1-232 (247)
62 cd03301 ABC_MalK_N The N-termi 100.0 6.6E-49 1.4E-53 390.1 25.1 211 292-511 1-213 (213)
63 cd03260 ABC_PstB_phosphate_tra 100.0 7.1E-49 1.5E-53 393.8 25.5 215 292-515 1-226 (227)
64 cd03256 ABC_PhnC_transporter A 100.0 1.1E-48 2.5E-53 395.6 27.1 220 292-518 1-234 (241)
65 PRK09493 glnQ glutamine ABC tr 100.0 1.7E-48 3.7E-53 394.4 28.1 220 291-518 1-225 (240)
66 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.4E-48 3.1E-53 395.5 27.4 222 292-518 1-225 (242)
67 PRK13634 cbiO cobalt transport 100.0 1.4E-48 2.9E-53 405.9 27.8 225 291-518 2-235 (290)
68 cd03269 ABC_putative_ATPase Th 100.0 1.3E-48 2.8E-53 387.3 25.8 209 292-511 1-210 (210)
69 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 7.4E-49 1.6E-53 391.1 24.0 211 292-507 1-218 (218)
70 TIGR03411 urea_trans_UrtD urea 100.0 2.8E-48 6E-53 393.2 28.3 219 291-517 2-230 (242)
71 PRK13651 cobalt transporter AT 100.0 2.4E-48 5.2E-53 406.2 28.4 225 291-518 2-254 (305)
72 PRK13641 cbiO cobalt transport 100.0 3.1E-48 6.7E-53 402.7 29.0 225 291-518 2-234 (287)
73 TIGR02673 FtsE cell division A 100.0 1.5E-48 3.3E-53 387.7 25.5 209 291-506 1-214 (214)
74 PRK13650 cbiO cobalt transport 100.0 2.5E-48 5.5E-53 401.8 28.1 224 290-519 3-230 (279)
75 PRK13631 cbiO cobalt transport 100.0 4.1E-48 8.8E-53 406.9 29.5 227 289-518 19-265 (320)
76 PRK13646 cbiO cobalt transport 100.0 3.7E-48 8.1E-53 401.9 28.8 225 291-518 2-235 (286)
77 cd03268 ABC_BcrA_bacitracin_re 100.0 1.7E-48 3.7E-53 385.9 25.0 207 292-511 1-208 (208)
78 TIGR03415 ABC_choXWV_ATP choli 100.0 2.3E-48 5E-53 415.3 27.3 209 309-519 36-255 (382)
79 PRK11831 putative ABC transpor 100.0 4.4E-48 9.6E-53 398.0 28.5 222 290-519 6-234 (269)
80 cd03224 ABC_TM1139_LivF_branch 100.0 2.7E-48 5.8E-53 388.0 26.1 216 292-517 1-220 (222)
81 COG0410 LivF ABC-type branched 100.0 1.7E-48 3.7E-53 378.1 23.7 222 290-519 2-227 (237)
82 PRK11264 putative amino-acid A 100.0 5.3E-48 1.2E-52 393.0 28.3 220 291-518 3-233 (250)
83 TIGR02315 ABC_phnC phosphonate 100.0 3.1E-48 6.7E-53 393.0 25.6 219 291-516 1-233 (243)
84 PRK11308 dppF dipeptide transp 100.0 7E-48 1.5E-52 406.2 29.3 234 290-524 4-250 (327)
85 PRK13635 cbiO cobalt transport 100.0 5.7E-48 1.2E-52 399.1 28.1 222 290-518 4-229 (279)
86 PRK13636 cbiO cobalt transport 100.0 6.7E-48 1.5E-52 399.4 28.6 222 290-518 4-231 (283)
87 PRK11629 lolD lipoprotein tran 100.0 8.9E-48 1.9E-52 387.5 28.6 219 290-513 4-229 (233)
88 PRK10908 cell division protein 100.0 5.6E-48 1.2E-52 386.1 26.9 212 291-509 1-217 (222)
89 PRK13652 cbiO cobalt transport 100.0 8.4E-48 1.8E-52 397.6 28.9 221 291-518 3-227 (277)
90 cd03292 ABC_FtsE_transporter F 100.0 4.5E-48 9.7E-53 384.3 25.5 209 292-507 1-214 (214)
91 cd03294 ABC_Pro_Gly_Bertaine T 100.0 2.8E-48 6.1E-53 399.5 24.6 219 293-519 26-251 (269)
92 PRK10895 lipopolysaccharide AB 100.0 6.4E-48 1.4E-52 390.4 26.9 220 291-518 3-226 (241)
93 PRK14268 phosphate ABC transpo 100.0 1.1E-47 2.3E-52 392.9 28.6 223 290-519 11-243 (258)
94 PRK13644 cbiO cobalt transport 100.0 7.9E-48 1.7E-52 397.1 27.8 220 291-518 1-224 (274)
95 PRK14267 phosphate ABC transpo 100.0 1.2E-47 2.6E-52 391.2 28.6 223 290-518 3-237 (253)
96 PRK14247 phosphate ABC transpo 100.0 1.4E-47 3.1E-52 389.9 28.6 222 291-518 3-234 (250)
97 PRK14242 phosphate transporter 100.0 1.5E-47 3.2E-52 390.5 28.5 222 290-518 5-237 (253)
98 PRK13638 cbiO cobalt transport 100.0 1E-47 2.2E-52 395.7 27.6 220 291-518 1-225 (271)
99 PRK10619 histidine/lysine/argi 100.0 2E-47 4.2E-52 390.6 29.3 222 290-518 4-241 (257)
100 cd03226 ABC_cobalt_CbiO_domain 100.0 4.8E-48 1E-52 381.9 23.8 202 294-508 2-205 (205)
101 cd03225 ABC_cobalt_CbiO_domain 100.0 6.2E-48 1.3E-52 382.6 24.6 207 294-506 2-211 (211)
102 PRK13633 cobalt transporter AT 100.0 1.4E-47 3E-52 396.6 28.0 227 289-519 2-234 (280)
103 PRK14273 phosphate ABC transpo 100.0 1.8E-47 3.9E-52 390.2 28.0 223 290-519 6-239 (254)
104 PRK13548 hmuV hemin importer A 100.0 2.1E-47 4.5E-52 390.7 28.4 220 291-518 2-230 (258)
105 PRK11124 artP arginine transpo 100.0 2E-47 4.3E-52 387.1 28.0 219 291-517 2-229 (242)
106 PRK13649 cbiO cobalt transport 100.0 2.4E-47 5.3E-52 394.8 29.0 225 291-518 2-234 (280)
107 cd03257 ABC_NikE_OppD_transpor 100.0 1.6E-47 3.5E-52 383.8 26.3 218 291-511 1-228 (228)
108 cd03262 ABC_HisP_GlnQ_permease 100.0 1.3E-47 2.8E-52 380.7 25.1 208 292-507 1-213 (213)
109 PRK11022 dppD dipeptide transp 100.0 1.9E-47 4E-52 403.0 27.9 232 291-524 3-249 (326)
110 PRK13639 cbiO cobalt transport 100.0 3E-47 6.6E-52 393.0 28.7 220 291-518 1-226 (275)
111 PRK11248 tauB taurine transpor 100.0 1.8E-47 4E-52 390.4 26.7 212 291-514 1-216 (255)
112 PRK11300 livG leucine/isoleuci 100.0 2.8E-47 6E-52 388.9 27.5 221 290-518 4-243 (255)
113 TIGR02211 LolD_lipo_ex lipopro 100.0 2.4E-47 5.3E-52 381.0 26.3 212 292-508 2-220 (221)
114 PRK11614 livF leucine/isoleuci 100.0 2.4E-47 5.1E-52 385.3 26.3 219 290-518 4-226 (237)
115 PRK13632 cbiO cobalt transport 100.0 3.2E-47 7E-52 392.0 27.2 222 290-518 6-231 (271)
116 PRK10744 pstB phosphate transp 100.0 5.5E-47 1.2E-51 388.0 28.6 223 289-518 11-244 (260)
117 PRK14274 phosphate ABC transpo 100.0 6.4E-47 1.4E-51 387.3 28.8 224 289-519 10-244 (259)
118 PRK14235 phosphate transporter 100.0 6.7E-47 1.5E-51 388.9 28.9 223 289-518 17-251 (267)
119 PRK15112 antimicrobial peptide 100.0 4.2E-47 9.2E-52 390.3 27.3 229 290-519 3-240 (267)
120 PRK09473 oppD oligopeptide tra 100.0 5.5E-47 1.2E-51 399.9 28.8 234 289-524 10-257 (330)
121 TIGR03410 urea_trans_UrtE urea 100.0 2.9E-47 6.3E-52 382.8 25.4 214 292-516 1-219 (230)
122 PRK10575 iron-hydroxamate tran 100.0 4.7E-47 1E-51 389.6 27.3 221 289-517 9-236 (265)
123 PRK14256 phosphate ABC transpo 100.0 7.4E-47 1.6E-51 385.2 28.4 224 290-519 3-237 (252)
124 TIGR00956 3a01205 Pleiotropic 100.0 2.3E-45 5E-50 448.1 46.9 218 290-514 758-989 (1394)
125 PRK11231 fecE iron-dicitrate t 100.0 4.9E-47 1.1E-51 387.3 26.9 219 291-517 2-226 (255)
126 PRK10584 putative ABC transpor 100.0 6E-47 1.3E-51 380.0 27.1 216 290-510 5-227 (228)
127 PRK14269 phosphate ABC transpo 100.0 7.9E-47 1.7E-51 383.7 28.2 221 291-518 2-230 (246)
128 PRK14270 phosphate ABC transpo 100.0 8.9E-47 1.9E-51 384.4 28.6 223 289-518 2-235 (251)
129 cd03298 ABC_ThiQ_thiamine_tran 100.0 3.5E-47 7.5E-52 377.3 24.8 209 292-511 1-211 (211)
130 PRK14245 phosphate ABC transpo 100.0 1.1E-46 2.3E-51 383.6 28.9 223 290-519 2-235 (250)
131 cd03267 ABC_NatA_like Similar 100.0 3.3E-47 7.2E-52 384.2 25.0 200 310-511 34-236 (236)
132 TIGR03005 ectoine_ehuA ectoine 100.0 6.1E-47 1.3E-51 385.8 27.1 220 292-519 1-237 (252)
133 PRK14241 phosphate transporter 100.0 1E-46 2.3E-51 385.5 28.9 222 291-518 4-242 (258)
134 PRK13648 cbiO cobalt transport 100.0 7E-47 1.5E-51 389.1 27.6 222 290-518 6-231 (269)
135 PRK14250 phosphate ABC transpo 100.0 5E-47 1.1E-51 384.0 26.0 216 291-518 3-221 (241)
136 COG4586 ABC-type uncharacteriz 100.0 8.4E-48 1.8E-52 378.7 19.7 303 291-606 3-323 (325)
137 PRK13640 cbiO cobalt transport 100.0 7.6E-47 1.7E-51 391.4 27.6 222 290-518 4-232 (282)
138 PRK13645 cbiO cobalt transport 100.0 8.3E-47 1.8E-51 392.5 28.0 226 290-518 5-240 (289)
139 TIGR02769 nickel_nikE nickel i 100.0 8.3E-47 1.8E-51 387.8 27.5 227 291-518 2-240 (265)
140 PRK14259 phosphate ABC transpo 100.0 1.2E-46 2.5E-51 387.5 28.4 222 289-518 11-253 (269)
141 TIGR03873 F420-0_ABC_ATP propo 100.0 9.7E-47 2.1E-51 385.3 27.4 218 292-517 2-225 (256)
142 PRK13642 cbiO cobalt transport 100.0 1.1E-46 2.5E-51 389.1 28.2 223 291-519 4-230 (277)
143 cd03235 ABC_Metallic_Cations A 100.0 2.7E-47 5.9E-52 378.6 22.6 205 294-511 2-213 (213)
144 PRK14248 phosphate ABC transpo 100.0 1.9E-46 4.1E-51 385.7 29.2 224 289-519 19-253 (268)
145 cd03300 ABC_PotA_N PotA is an 100.0 1.1E-46 2.5E-51 379.2 27.0 219 292-519 1-221 (232)
146 PRK15093 antimicrobial peptide 100.0 1.2E-46 2.5E-51 398.0 28.2 229 291-521 3-251 (330)
147 PRK10771 thiQ thiamine transpo 100.0 1E-46 2.2E-51 379.6 26.4 217 291-518 1-219 (232)
148 cd03299 ABC_ModC_like Archeal 100.0 1.4E-46 2.9E-51 379.5 27.3 217 292-518 1-219 (235)
149 PRK10253 iron-enterobactin tra 100.0 1.1E-46 2.4E-51 386.8 27.2 221 290-518 6-233 (265)
150 TIGR01978 sufC FeS assembly AT 100.0 1.2E-46 2.5E-51 381.4 26.7 220 292-518 1-234 (243)
151 PRK11247 ssuB aliphatic sulfon 100.0 1.3E-46 2.7E-51 384.3 26.4 208 289-514 10-219 (257)
152 PRK14239 phosphate transporter 100.0 2.7E-46 5.8E-51 381.0 28.7 223 290-519 4-237 (252)
153 PRK09984 phosphonate/organopho 100.0 1.5E-46 3.3E-51 385.2 26.9 219 290-516 3-240 (262)
154 TIGR00968 3a0106s01 sulfate AB 100.0 1.7E-46 3.7E-51 379.3 26.9 218 292-518 1-220 (237)
155 PRK11144 modC molybdate transp 100.0 1.4E-46 3E-51 400.6 27.3 213 291-520 1-220 (352)
156 PRK14240 phosphate transporter 100.0 3.1E-46 6.6E-51 380.2 28.6 221 291-518 3-234 (250)
157 PRK14262 phosphate ABC transpo 100.0 2.8E-46 6.1E-51 380.5 28.3 222 291-519 3-235 (250)
158 PRK14251 phosphate ABC transpo 100.0 2.8E-46 6E-51 380.7 28.1 222 290-518 3-235 (251)
159 COG3840 ThiQ ABC-type thiamine 100.0 3.7E-47 8E-52 353.9 19.4 218 291-519 1-220 (231)
160 PRK14237 phosphate transporter 100.0 4.2E-46 9.1E-51 383.0 29.4 224 288-518 17-251 (267)
161 PRK14249 phosphate ABC transpo 100.0 4.1E-46 8.8E-51 379.6 28.8 224 289-519 2-236 (251)
162 TIGR03740 galliderm_ABC gallid 100.0 2.2E-46 4.9E-51 374.7 26.2 209 292-515 1-210 (223)
163 TIGR01277 thiQ thiamine ABC tr 100.0 2E-46 4.4E-51 372.6 25.6 210 292-512 1-212 (213)
164 TIGR02142 modC_ABC molybdenum 100.0 2.3E-46 5E-51 399.4 27.1 213 296-520 4-223 (354)
165 PRK14253 phosphate ABC transpo 100.0 4.6E-46 1E-50 378.6 27.9 221 291-518 3-233 (249)
166 PRK11701 phnK phosphonate C-P 100.0 4.4E-46 9.5E-51 380.9 27.6 223 290-519 5-242 (258)
167 PRK14261 phosphate ABC transpo 100.0 4.9E-46 1.1E-50 379.4 27.9 224 289-519 4-238 (253)
168 cd03297 ABC_ModC_molybdenum_tr 100.0 3E-46 6.5E-51 371.5 25.2 204 295-511 4-214 (214)
169 PRK14272 phosphate ABC transpo 100.0 6.8E-46 1.5E-50 378.0 28.3 222 291-518 4-236 (252)
170 PRK14236 phosphate transporter 100.0 9.1E-46 2E-50 381.4 28.7 223 289-518 23-256 (272)
171 PRK14275 phosphate ABC transpo 100.0 1.2E-45 2.5E-50 383.2 28.6 224 289-519 37-271 (286)
172 COG0444 DppD ABC-type dipeptid 100.0 3.8E-46 8.3E-51 379.1 24.0 232 292-525 2-250 (316)
173 cd03251 ABCC_MsbA MsbA is an e 100.0 6.1E-46 1.3E-50 374.1 25.3 220 292-521 1-228 (234)
174 PRK14254 phosphate ABC transpo 100.0 1.5E-45 3.1E-50 382.2 28.8 222 289-518 37-269 (285)
175 cd03252 ABCC_Hemolysin The ABC 100.0 3.9E-46 8.4E-51 376.3 23.8 218 292-519 1-226 (237)
176 PRK14244 phosphate ABC transpo 100.0 1.2E-45 2.5E-50 376.2 27.1 221 292-519 6-238 (251)
177 PRK14238 phosphate transporter 100.0 1.7E-45 3.6E-50 379.3 28.5 224 289-519 22-256 (271)
178 COG4598 HisP ABC-type histidin 100.0 4.4E-47 9.5E-52 352.2 14.9 222 290-519 5-242 (256)
179 PRK14260 phosphate ABC transpo 100.0 1.4E-45 3.1E-50 377.3 27.7 222 290-518 6-243 (259)
180 PRK10762 D-ribose transporter 100.0 5.8E-46 1.3E-50 414.4 26.5 219 290-516 3-228 (501)
181 PRK14243 phosphate transporter 100.0 1.7E-45 3.6E-50 377.9 27.5 223 289-519 8-249 (264)
182 PRK14255 phosphate ABC transpo 100.0 2.8E-45 6.1E-50 373.5 28.9 223 290-519 4-237 (252)
183 PRK14246 phosphate ABC transpo 100.0 2.5E-45 5.4E-50 375.1 27.9 225 289-519 8-242 (257)
184 PRK13549 xylose transporter AT 100.0 9E-46 2E-50 413.3 26.6 219 290-516 4-230 (506)
185 PRK14271 phosphate ABC transpo 100.0 3.6E-45 7.8E-50 377.7 28.9 223 290-519 20-252 (276)
186 PRK13547 hmuV hemin importer A 100.0 1.8E-45 3.9E-50 378.8 26.5 219 291-517 1-243 (272)
187 cd03254 ABCC_Glucan_exporter_l 100.0 1.7E-45 3.7E-50 369.7 25.2 219 291-520 2-228 (229)
188 cd03234 ABCG_White The White s 100.0 2.1E-45 4.5E-50 368.5 25.6 215 291-511 3-226 (226)
189 PRK14258 phosphate ABC transpo 100.0 4.4E-45 9.5E-50 374.2 28.5 222 290-518 6-245 (261)
190 PRK09700 D-allose transporter 100.0 1.7E-45 3.7E-50 411.6 27.2 219 290-516 4-232 (510)
191 PRK14263 phosphate ABC transpo 100.0 5.7E-45 1.2E-49 373.2 28.8 222 290-519 7-246 (261)
192 PRK15439 autoinducer 2 ABC tra 100.0 2.6E-45 5.7E-50 409.7 28.6 216 289-516 9-227 (510)
193 TIGR02323 CP_lyasePhnK phospho 100.0 3.3E-45 7.3E-50 373.2 26.9 223 290-519 2-239 (253)
194 PRK10418 nikD nickel transport 100.0 4E-45 8.6E-50 373.0 27.4 219 291-519 4-231 (254)
195 PLN03140 ABC transporter G fam 100.0 1.3E-43 2.9E-48 431.5 45.7 227 291-521 867-1117(1470)
196 TIGR03608 L_ocin_972_ABC putat 100.0 1.4E-45 3.1E-50 364.1 23.3 200 294-502 1-206 (206)
197 PRK14265 phosphate ABC transpo 100.0 6.2E-45 1.3E-49 375.6 28.7 222 289-518 18-258 (274)
198 PRK14266 phosphate ABC transpo 100.0 5.5E-45 1.2E-49 371.0 27.9 222 291-519 3-235 (250)
199 PRK10261 glutathione transport 100.0 2.9E-45 6.4E-50 417.8 28.6 230 289-519 311-554 (623)
200 COG1123 ATPase components of v 100.0 1.6E-45 3.4E-50 399.5 24.8 236 288-524 277-525 (539)
201 TIGR02770 nickel_nikD nickel i 100.0 2.8E-45 6E-50 368.7 24.5 206 312-518 1-215 (230)
202 PRK10419 nikE nickel transport 100.0 6.2E-45 1.3E-49 374.4 27.4 227 291-518 3-241 (268)
203 PRK10247 putative ABC transpor 100.0 2.8E-45 6E-50 367.5 24.2 214 289-513 5-222 (225)
204 PRK14257 phosphate ABC transpo 100.0 1E-44 2.2E-49 382.3 29.7 226 289-519 78-314 (329)
205 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 3.3E-45 7.1E-50 369.8 24.8 220 292-520 1-228 (238)
206 PRK13538 cytochrome c biogenes 100.0 3.4E-45 7.4E-50 361.4 24.2 201 291-502 1-202 (204)
207 PRK14252 phosphate ABC transpo 100.0 1.3E-44 2.8E-49 371.5 28.4 223 289-518 14-249 (265)
208 cd03245 ABCC_bacteriocin_expor 100.0 3.3E-45 7.1E-50 365.4 23.1 206 292-511 3-220 (220)
209 PRK10261 glutathione transport 100.0 6.5E-45 1.4E-49 415.0 28.1 228 289-518 10-258 (623)
210 TIGR01184 ntrCD nitrate transp 100.0 3.7E-45 8E-50 367.8 22.9 198 313-516 1-202 (230)
211 TIGR02982 heterocyst_DevA ABC 100.0 8.2E-45 1.8E-49 362.8 25.3 211 292-507 2-219 (220)
212 CHL00131 ycf16 sulfate ABC tra 100.0 2.6E-44 5.6E-49 366.3 28.1 220 290-516 6-239 (252)
213 PRK14264 phosphate ABC transpo 100.0 3.5E-44 7.5E-49 375.4 29.7 224 288-518 42-289 (305)
214 PRK15056 manganese/iron transp 100.0 2E-44 4.3E-49 371.5 26.3 218 290-517 5-229 (272)
215 PRK13543 cytochrome c biogenes 100.0 2.2E-44 4.7E-49 358.3 25.6 202 290-504 10-212 (214)
216 COG1123 ATPase components of v 100.0 1.7E-44 3.8E-49 391.3 26.9 237 290-528 4-254 (539)
217 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.3E-44 2.9E-49 372.3 24.5 213 291-519 2-226 (275)
218 TIGR02324 CP_lyasePhnL phospho 100.0 2.1E-44 4.6E-49 360.6 25.2 211 291-502 1-222 (224)
219 PRK03695 vitamin B12-transport 100.0 1.7E-44 3.6E-49 367.1 24.7 211 293-517 2-221 (248)
220 TIGR03269 met_CoM_red_A2 methy 100.0 2.8E-44 6E-49 402.7 28.9 229 289-519 277-518 (520)
221 cd03253 ABCC_ATM1_transporter 100.0 2.6E-44 5.5E-49 362.8 25.8 217 292-519 1-225 (236)
222 PRK11288 araG L-arabinose tran 100.0 2.2E-44 4.7E-49 401.7 27.6 216 290-513 3-224 (501)
223 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 2.8E-44 6.2E-49 360.0 25.5 201 292-511 23-224 (224)
224 TIGR03269 met_CoM_red_A2 methy 100.0 1.9E-44 4.2E-49 404.0 26.6 221 292-520 1-260 (520)
225 cd03244 ABCC_MRP_domain2 Domai 100.0 1.8E-44 3.9E-49 360.3 23.2 208 292-512 3-220 (221)
226 PRK10982 galactose/methyl gala 100.0 1.7E-44 3.7E-49 401.7 25.6 215 294-516 1-221 (491)
227 TIGR02633 xylG D-xylose ABC tr 100.0 2.4E-44 5.2E-49 401.4 26.7 217 292-515 2-227 (500)
228 COG1129 MglA ABC-type sugar tr 100.0 2.5E-44 5.5E-49 387.7 25.8 217 289-513 6-229 (500)
229 cd03233 ABC_PDR_domain1 The pl 100.0 3.2E-44 7E-49 354.0 24.5 194 291-511 3-202 (202)
230 cd03231 ABC_CcmA_heme_exporter 100.0 2.6E-44 5.6E-49 354.3 22.9 197 292-502 1-198 (201)
231 PRK13546 teichoic acids export 100.0 1.2E-43 2.6E-48 363.6 28.6 218 290-521 3-235 (264)
232 PRK15134 microcin C ABC transp 100.0 2.5E-44 5.5E-49 403.8 25.4 228 289-518 273-515 (529)
233 cd03369 ABCC_NFT1 Domain 2 of 100.0 6.1E-44 1.3E-48 353.1 24.9 202 290-513 5-207 (207)
234 COG4181 Predicted ABC-type tra 100.0 1.5E-44 3.3E-49 333.1 19.0 214 291-509 6-226 (228)
235 PRK15134 microcin C ABC transp 100.0 6.3E-44 1.4E-48 400.6 28.2 227 290-518 4-246 (529)
236 cd03248 ABCC_TAP TAP, the Tran 100.0 1.9E-44 4E-49 361.5 21.3 210 289-507 9-226 (226)
237 PRK09580 sufC cysteine desulfu 100.0 1E-43 2.2E-48 361.1 26.9 220 291-517 1-234 (248)
238 PRK13549 xylose transporter AT 100.0 3.4E-44 7.3E-49 400.7 25.2 224 289-516 257-492 (506)
239 COG4525 TauB ABC-type taurine 100.0 3E-44 6.4E-49 337.7 20.5 222 291-523 3-228 (259)
240 COG2274 SunT ABC-type bacterio 100.0 1.8E-44 4E-49 409.7 22.2 218 290-519 470-697 (709)
241 COG3845 ABC-type uncharacteriz 100.0 5E-44 1.1E-48 378.1 23.7 215 290-512 3-223 (501)
242 PRK09544 znuC high-affinity zi 100.0 9.7E-44 2.1E-48 362.0 25.0 203 290-518 3-209 (251)
243 cd03213 ABCG_EPDR ABCG transpo 100.0 1.2E-43 2.6E-48 347.8 24.7 188 291-511 3-194 (194)
244 COG4161 ArtP ABC-type arginine 100.0 2.5E-44 5.5E-49 328.5 18.1 218 291-516 2-228 (242)
245 COG4674 Uncharacterized ABC-ty 100.0 1.8E-44 4E-49 339.2 17.4 223 290-520 4-237 (249)
246 cd03247 ABCC_cytochrome_bd The 100.0 8.5E-44 1.8E-48 344.0 22.6 178 292-511 1-178 (178)
247 cd03288 ABCC_SUR2 The SUR doma 100.0 1.6E-43 3.5E-48 361.8 25.2 219 290-519 18-244 (257)
248 cd03230 ABC_DR_subfamily_A Thi 100.0 1.4E-43 3E-48 341.1 23.1 172 292-507 1-173 (173)
249 PRK09700 D-allose transporter 100.0 8.8E-44 1.9E-48 397.8 25.1 216 289-513 263-493 (510)
250 TIGR02633 xylG D-xylose ABC tr 100.0 7.7E-44 1.7E-48 397.4 24.4 221 290-514 256-488 (500)
251 PRK13539 cytochrome c biogenes 100.0 1.3E-43 2.8E-48 351.0 23.2 198 291-504 2-200 (207)
252 COG4604 CeuD ABC-type enteroch 100.0 5.4E-45 1.2E-49 343.3 12.3 219 291-518 1-225 (252)
253 TIGR01189 ccmA heme ABC export 100.0 1.5E-43 3.2E-48 348.1 22.2 196 292-501 1-197 (198)
254 PRK10938 putative molybdenum t 100.0 1.3E-43 2.7E-48 394.7 24.4 211 291-517 3-223 (490)
255 PRK11174 cysteine/glutathione 100.0 1.6E-43 3.5E-48 402.3 25.8 216 291-520 349-574 (588)
256 cd03229 ABC_Class3 This class 100.0 1.7E-43 3.6E-48 342.0 22.0 173 292-506 1-178 (178)
257 cd03215 ABC_Carb_Monos_II This 100.0 2.4E-43 5.2E-48 342.1 23.1 174 290-507 3-182 (182)
258 PRK13545 tagH teichoic acids e 100.0 5.7E-43 1.2E-47 381.0 28.3 215 289-520 19-234 (549)
259 KOG0058 Peptide exporter, ABC 100.0 1.1E-43 2.4E-48 390.1 22.3 223 290-521 464-694 (716)
260 PLN03211 ABC transporter G-25; 100.0 2.3E-43 4.9E-48 402.6 25.0 217 294-521 71-299 (659)
261 COG4988 CydD ABC-type transpor 100.0 1.9E-43 4E-48 381.8 22.8 217 292-521 321-546 (559)
262 PRK11160 cysteine/glutathione 100.0 4.3E-43 9.4E-48 397.2 25.9 218 290-521 337-565 (574)
263 cd03232 ABC_PDR_domain2 The pl 100.0 7.2E-43 1.6E-47 341.7 23.9 185 291-511 3-192 (192)
264 PRK13540 cytochrome c biogenes 100.0 4.8E-43 1E-47 345.0 22.8 196 291-500 1-197 (200)
265 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 5.6E-43 1.2E-47 404.4 26.9 214 291-519 451-674 (686)
266 cd03246 ABCC_Protease_Secretio 100.0 5.6E-43 1.2E-47 336.8 22.3 171 292-507 1-173 (173)
267 TIGR01166 cbiO cobalt transpor 100.0 3.6E-43 7.8E-48 343.0 20.6 180 310-492 5-190 (190)
268 cd03217 ABC_FeS_Assembly ABC-t 100.0 1.1E-42 2.3E-47 342.6 23.9 186 292-517 1-192 (200)
269 COG4559 ABC-type hemin transpo 100.0 4.9E-43 1.1E-47 333.9 20.5 219 291-517 1-229 (259)
270 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 5.7E-43 1.2E-47 405.9 25.3 217 290-520 476-702 (710)
271 cd03214 ABC_Iron-Siderophores_ 100.0 4.2E-43 9.2E-48 339.8 20.0 177 293-511 1-180 (180)
272 PRK11176 lipid transporter ATP 100.0 7.4E-43 1.6E-47 396.4 25.1 219 291-520 341-569 (582)
273 TIGR03375 type_I_sec_LssB type 100.0 1E-42 2.2E-47 402.7 26.4 220 290-521 462-691 (694)
274 cd03228 ABCC_MRP_Like The MRP 100.0 9.2E-43 2E-47 334.7 21.6 170 292-506 1-171 (171)
275 PRK10762 D-ribose transporter 100.0 1.1E-42 2.4E-47 388.1 25.1 215 290-516 256-482 (501)
276 KOG0055 Multidrug/pheromone ex 100.0 4E-43 8.8E-48 405.0 21.9 222 289-521 348-579 (1228)
277 PRK10790 putative multidrug tr 100.0 1.3E-42 2.9E-47 395.0 26.0 217 290-520 339-565 (592)
278 TIGR00958 3a01208 Conjugate Tr 100.0 1.1E-42 2.4E-47 402.6 25.0 219 290-521 477-705 (711)
279 TIGR01187 potA spermidine/putr 100.0 1.3E-42 2.9E-47 366.3 23.1 189 328-519 1-191 (325)
280 COG4987 CydC ABC-type transpor 100.0 2.4E-43 5.2E-48 375.3 17.1 219 291-521 336-564 (573)
281 PRK11288 araG L-arabinose tran 100.0 1.5E-42 3.2E-47 387.0 24.2 215 290-515 256-482 (501)
282 TIGR03771 anch_rpt_ABC anchore 100.0 3.9E-42 8.5E-47 344.3 23.0 194 318-518 1-201 (223)
283 COG1132 MdlB ABC-type multidru 100.0 3.2E-42 6.9E-47 390.0 24.9 216 291-519 328-553 (567)
284 TIGR01193 bacteriocin_ABC ABC- 100.0 2.8E-42 6.1E-47 399.9 24.8 218 290-520 472-699 (708)
285 PRK15439 autoinducer 2 ABC tra 100.0 4E-42 8.7E-47 384.1 24.9 216 289-516 266-490 (510)
286 TIGR01192 chvA glucan exporter 100.0 7E-42 1.5E-46 388.0 26.6 219 291-520 334-560 (585)
287 TIGR01842 type_I_sec_PrtD type 100.0 9.8E-42 2.1E-46 384.1 27.5 220 290-519 315-543 (544)
288 PRK10982 galactose/methyl gala 100.0 5.2E-42 1.1E-46 381.7 25.0 216 289-513 248-475 (491)
289 PRK15064 ABC transporter ATP-b 100.0 1E-41 2.3E-46 382.6 26.7 208 291-517 1-241 (530)
290 PRK13657 cyclic beta-1,2-gluca 100.0 6.8E-42 1.5E-46 388.9 25.3 216 291-519 334-559 (588)
291 TIGR01846 type_I_sec_HlyB type 100.0 7.1E-42 1.5E-46 395.6 25.9 219 290-520 454-682 (694)
292 cd03250 ABCC_MRP_domain1 Domai 100.0 6.9E-42 1.5E-46 337.7 21.6 193 292-506 1-204 (204)
293 KOG0057 Mitochondrial Fe/S clu 100.0 4.2E-42 9.2E-47 366.0 21.3 214 291-518 351-574 (591)
294 PRK10789 putative multidrug tr 100.0 8.9E-42 1.9E-46 386.2 25.4 219 291-521 313-541 (569)
295 cd03216 ABC_Carb_Monos_I This 100.0 1.8E-41 4E-46 323.2 22.9 159 292-509 1-162 (163)
296 TIGR02204 MsbA_rel ABC transpo 100.0 1.1E-41 2.4E-46 386.3 25.3 219 291-520 337-565 (576)
297 PRK11819 putative ABC transpor 100.0 2E-41 4.4E-46 382.0 26.6 207 290-516 5-248 (556)
298 cd03290 ABCC_SUR1_N The SUR do 100.0 1.6E-41 3.4E-46 338.5 22.6 200 293-506 2-218 (218)
299 PRK15064 ABC transporter ATP-b 100.0 2E-41 4.4E-46 380.3 26.1 207 290-520 318-527 (530)
300 COG4148 ModC ABC-type molybdat 100.0 1.5E-42 3.3E-47 342.1 14.8 198 315-520 16-220 (352)
301 COG4608 AppF ABC-type oligopep 100.0 5.5E-42 1.2E-46 341.9 18.9 199 290-525 3-206 (268)
302 PRK10535 macrolide transporter 100.0 4.9E-41 1.1E-45 384.5 29.1 223 290-517 3-231 (648)
303 TIGR02203 MsbA_lipidA lipid A 100.0 1.2E-41 2.6E-46 385.7 23.4 218 291-519 330-557 (571)
304 PRK15177 Vi polysaccharide exp 100.0 2.3E-41 5E-46 336.4 21.8 193 311-520 1-194 (213)
305 PRK13541 cytochrome c biogenes 100.0 2.6E-41 5.6E-46 331.4 21.6 191 291-499 1-192 (195)
306 TIGR00955 3a01204 The Eye Pigm 100.0 4.5E-41 9.8E-46 383.1 24.8 209 309-521 37-259 (617)
307 PRK10938 putative molybdenum t 100.0 3.7E-41 7.9E-46 374.9 23.1 216 289-511 258-485 (490)
308 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.2E-40 2.5E-45 375.7 26.9 207 290-516 3-246 (552)
309 cd03291 ABCC_CFTR1 The CFTR su 100.0 2E-40 4.4E-45 342.5 25.9 204 287-519 35-248 (282)
310 cd03223 ABCD_peroxisomal_ALDP 100.0 9.4E-41 2E-45 319.2 21.5 164 292-506 1-164 (166)
311 COG4619 ABC-type uncharacteriz 100.0 1.2E-41 2.6E-46 313.0 14.4 201 309-516 15-218 (223)
312 cd03237 ABC_RNaseL_inhibitor_d 100.0 1E-40 2.2E-45 338.6 22.4 189 311-516 8-205 (246)
313 PRK11819 putative ABC transpor 100.0 1.8E-40 3.8E-45 374.4 26.5 209 289-518 322-533 (556)
314 KOG0055 Multidrug/pheromone ex 100.0 3.3E-41 7.2E-46 389.2 20.9 224 291-525 987-1220(1228)
315 COG4172 ABC-type uncharacteriz 100.0 1.2E-40 2.6E-45 342.5 22.5 233 290-524 275-522 (534)
316 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 3.4E-40 7.3E-45 372.0 26.5 210 289-519 320-532 (552)
317 PLN03232 ABC transporter C fam 100.0 1.4E-40 3E-45 409.8 24.7 218 291-521 1234-1461(1495)
318 COG1134 TagH ABC-type polysacc 100.0 4.2E-40 9.2E-45 322.4 23.0 200 309-521 39-239 (249)
319 PLN03130 ABC transporter C fam 100.0 2.5E-40 5.5E-45 407.9 26.1 218 290-520 1236-1463(1622)
320 PTZ00265 multidrug resistance 100.0 2.4E-40 5.3E-45 404.6 24.4 218 291-519 1165-1453(1466)
321 TIGR02857 CydD thiol reductant 100.0 4E-40 8.7E-45 370.0 23.0 200 291-502 320-529 (529)
322 cd03236 ABC_RNaseL_inhibitor_d 100.0 3.5E-40 7.6E-45 336.2 19.7 201 295-510 4-219 (255)
323 PRK10636 putative ABC transpor 100.0 2.1E-39 4.6E-44 370.2 25.7 205 289-518 310-517 (638)
324 TIGR00957 MRP_assoc_pro multi 100.0 1.9E-39 4E-44 400.3 26.7 217 290-519 1283-1509(1522)
325 PTZ00243 ABC transporter; Prov 100.0 1.9E-39 4.1E-44 399.6 26.1 216 291-519 1308-1534(1560)
326 COG1119 ModF ABC-type molybden 100.0 8.3E-40 1.8E-44 319.9 17.8 217 288-512 28-256 (257)
327 TIGR02868 CydC thiol reductant 100.0 9.3E-40 2E-44 367.0 20.8 187 291-489 334-529 (529)
328 PRK10522 multidrug transporter 100.0 2.7E-39 5.9E-44 364.5 24.4 201 291-510 322-530 (547)
329 PRK13409 putative ATPase RIL; 100.0 2.8E-39 6E-44 364.8 24.4 197 289-512 338-536 (590)
330 COG1101 PhnK ABC-type uncharac 100.0 1.5E-39 3.3E-44 310.6 18.4 221 291-512 1-232 (263)
331 PTZ00265 multidrug resistance 100.0 1.8E-39 4E-44 396.9 24.1 210 291-505 382-655 (1466)
332 TIGR01194 cyc_pep_trnsptr cycl 100.0 4.2E-39 9.1E-44 363.3 24.7 207 290-510 336-551 (555)
333 PRK11147 ABC transporter ATPas 100.0 5.9E-39 1.3E-43 367.0 25.2 207 289-516 317-526 (635)
334 COG4172 ABC-type uncharacteriz 100.0 4.4E-39 9.5E-44 331.0 21.2 236 289-526 4-255 (534)
335 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 1.1E-38 2.3E-43 297.9 20.3 144 292-506 1-144 (144)
336 PRK10636 putative ABC transpor 100.0 2.1E-38 4.6E-43 362.0 26.7 206 291-516 1-234 (638)
337 PLN03073 ABC transporter F fam 100.0 2.8E-38 6.1E-43 362.8 26.8 206 290-519 507-715 (718)
338 TIGR00956 3a01205 Pleiotropic 100.0 1.1E-38 2.4E-43 389.6 24.1 210 309-520 73-302 (1394)
339 COG4167 SapF ABC-type antimicr 100.0 1.2E-38 2.5E-43 296.9 17.6 228 291-519 4-240 (267)
340 TIGR01271 CFTR_protein cystic 100.0 3.3E-38 7.1E-43 388.3 26.5 216 290-519 1216-1441(1490)
341 KOG0056 Heavy metal exporter H 100.0 3.1E-39 6.8E-44 337.2 13.7 221 290-524 536-767 (790)
342 COG0396 sufC Cysteine desulfur 100.0 2.3E-37 5.1E-42 299.3 24.5 224 290-520 2-235 (251)
343 PRK11147 ABC transporter ATPas 100.0 2.1E-37 4.5E-42 354.3 27.1 203 291-515 3-240 (635)
344 KOG0061 Transporter, ABC super 100.0 8.7E-38 1.9E-42 353.4 23.1 225 291-520 25-262 (613)
345 cd03222 ABC_RNaseL_inhibitor T 100.0 8.9E-38 1.9E-42 300.8 19.3 146 295-508 4-151 (177)
346 PLN03140 ABC transporter G fam 100.0 5.2E-38 1.1E-42 382.7 20.9 210 309-520 177-429 (1470)
347 COG4618 ArpD ABC-type protease 100.0 1.3E-37 2.8E-42 328.8 21.0 225 289-521 332-563 (580)
348 PRK13409 putative ATPase RIL; 100.0 5.8E-38 1.3E-42 354.1 19.0 193 296-505 78-287 (590)
349 TIGR00954 3a01203 Peroxysomal 100.0 1.9E-37 4.2E-42 355.3 22.9 194 290-504 450-653 (659)
350 cd00267 ABC_ATPase ABC (ATP-bi 100.0 8.7E-37 1.9E-41 288.9 20.8 154 294-506 2-157 (157)
351 cd03238 ABC_UvrA The excision 100.0 3.6E-36 7.8E-41 289.4 19.8 158 309-508 7-167 (176)
352 COG4133 CcmA ABC-type transpor 100.0 1.2E-36 2.6E-41 285.8 16.0 191 291-492 2-193 (209)
353 COG4107 PhnK ABC-type phosphon 100.0 4E-36 8.7E-41 277.9 16.2 225 289-524 4-247 (258)
354 KOG0065 Pleiotropic drug resis 100.0 8.7E-35 1.9E-39 335.8 31.1 219 291-515 787-1018(1391)
355 TIGR00957 MRP_assoc_pro multi 100.0 9.7E-36 2.1E-40 367.4 24.8 208 291-519 636-851 (1522)
356 PLN03073 ABC transporter F fam 100.0 5.5E-36 1.2E-40 343.9 19.0 216 290-515 176-428 (718)
357 PLN03232 ABC transporter C fam 100.0 1.3E-35 2.8E-40 365.8 23.6 206 291-519 614-829 (1495)
358 TIGR01271 CFTR_protein cystic 100.0 2.7E-35 5.8E-40 362.5 25.8 193 310-519 439-637 (1490)
359 PLN03130 ABC transporter C fam 100.0 1.8E-35 3.8E-40 365.1 24.1 205 291-519 614-829 (1622)
360 COG0488 Uup ATPase components 100.0 5.4E-35 1.2E-39 322.8 22.4 201 290-511 2-232 (530)
361 COG5265 ATM1 ABC-type transpor 100.0 4.1E-35 9E-40 303.7 15.2 217 290-519 261-487 (497)
362 COG4778 PhnL ABC-type phosphon 100.0 5.5E-35 1.2E-39 269.5 13.6 213 291-504 4-227 (235)
363 COG4136 ABC-type uncharacteriz 100.0 8.6E-35 1.9E-39 263.1 14.0 199 291-502 2-207 (213)
364 cd03270 ABC_UvrA_I The excisio 100.0 1.1E-33 2.5E-38 283.7 20.2 193 309-511 7-226 (226)
365 PTZ00243 ABC transporter; Prov 100.0 1.3E-33 2.9E-38 348.0 22.9 190 310-518 673-870 (1560)
366 KOG0054 Multidrug resistance-a 100.0 1.5E-33 3.3E-38 332.9 21.5 221 289-522 1136-1366(1381)
367 COG1129 MglA ABC-type sugar tr 100.0 3.5E-32 7.7E-37 293.7 23.0 213 289-513 261-485 (500)
368 COG0488 Uup ATPase components 100.0 7.2E-32 1.6E-36 298.0 23.1 206 289-519 319-526 (530)
369 PF00005 ABC_tran: ABC transpo 100.0 1.4E-32 3E-37 253.5 13.0 132 313-459 1-137 (137)
370 cd03271 ABC_UvrA_II The excisi 100.0 1E-31 2.2E-36 273.5 19.2 196 310-513 8-261 (261)
371 cd03278 ABC_SMC_barmotin Barmo 100.0 4.1E-32 9E-37 266.6 14.3 164 314-504 14-190 (197)
372 KOG0054 Multidrug resistance-a 100.0 2.8E-31 6E-36 313.8 23.0 208 288-519 515-732 (1381)
373 cd03274 ABC_SMC4_euk Eukaryoti 100.0 1.2E-32 2.7E-37 273.3 5.2 185 291-504 5-204 (212)
374 cd03272 ABC_SMC3_euk Eukaryoti 100.0 2.5E-31 5.5E-36 269.3 13.4 185 310-503 15-234 (243)
375 cd03273 ABC_SMC2_euk Eukaryoti 100.0 2.2E-30 4.7E-35 264.0 11.1 180 323-503 25-242 (251)
376 COG3845 ABC-type uncharacteriz 100.0 1.2E-28 2.6E-33 261.4 22.3 222 288-515 254-489 (501)
377 cd03279 ABC_sbcCD SbcCD and ot 100.0 7.3E-30 1.6E-34 253.9 11.9 192 291-506 5-210 (213)
378 COG4138 BtuD ABC-type cobalami 100.0 8.4E-30 1.8E-34 236.2 7.3 198 312-517 14-220 (248)
379 PRK00635 excinuclease ABC subu 100.0 5.4E-27 1.2E-31 284.2 24.8 213 291-518 600-906 (1809)
380 cd03240 ABC_Rad50 The catalyti 100.0 3.1E-28 6.8E-33 240.4 11.4 164 317-505 17-198 (204)
381 PRK00349 uvrA excinuclease ABC 100.0 5.3E-27 1.2E-31 273.9 23.1 127 385-519 792-928 (943)
382 COG4615 PvdE ABC-type sideroph 99.9 3.3E-28 7.2E-33 250.0 10.9 204 290-511 321-530 (546)
383 KOG0927 Predicted transporter 99.9 4.1E-27 8.8E-32 250.8 15.5 220 288-515 72-306 (614)
384 KOG0927 Predicted transporter 99.9 2.8E-27 6.1E-32 252.0 11.9 208 289-519 387-597 (614)
385 COG4170 SapD ABC-type antimicr 99.9 7.1E-27 1.5E-31 222.4 11.6 233 291-525 3-255 (330)
386 cd03276 ABC_SMC6_euk Eukaryoti 99.9 2.4E-26 5.3E-31 225.9 14.2 171 312-506 11-192 (198)
387 TIGR00630 uvra excinuclease AB 99.9 3.5E-25 7.5E-30 258.3 22.7 125 384-516 789-923 (924)
388 cd03275 ABC_SMC1_euk Eukaryoti 99.9 1.3E-25 2.9E-30 228.2 11.2 197 291-504 3-233 (247)
389 COG1245 Predicted ATPase, RNas 99.9 7.2E-25 1.6E-29 229.2 15.9 187 291-503 342-530 (591)
390 COG4178 ABC-type uncharacteriz 99.9 1.8E-24 3.9E-29 238.3 18.8 189 289-500 390-584 (604)
391 KOG2355 Predicted ABC-type tra 99.9 3.4E-24 7.3E-29 203.7 16.3 214 289-518 11-237 (291)
392 KOG0062 ATPase component of AB 99.9 4.4E-24 9.6E-29 226.6 15.4 199 289-509 360-559 (582)
393 KOG0062 ATPase component of AB 99.9 2.1E-24 4.6E-29 229.0 9.5 202 290-516 79-283 (582)
394 KOG0065 Pleiotropic drug resis 99.9 1.4E-23 3E-28 243.5 13.4 211 309-521 127-354 (1391)
395 cd03280 ABC_MutS2 MutS2 homolo 99.9 3.5E-23 7.7E-28 203.8 11.0 146 312-511 16-172 (200)
396 KOG0066 eIF2-interacting prote 99.9 2.3E-22 4.9E-27 208.7 13.6 193 289-507 584-779 (807)
397 cd03277 ABC_SMC5_euk Eukaryoti 99.9 2.4E-22 5.1E-27 199.8 12.0 84 423-506 119-211 (213)
398 COG1245 Predicted ATPase, RNas 99.9 5.5E-22 1.2E-26 207.7 11.7 192 319-524 96-313 (591)
399 KOG0060 Long-chain acyl-CoA tr 99.9 7.6E-21 1.6E-25 204.5 18.9 201 289-504 431-641 (659)
400 cd03285 ABC_MSH2_euk MutS2 hom 99.9 1.5E-21 3.3E-26 195.1 10.8 151 310-512 17-175 (222)
401 cd03241 ABC_RecN RecN ATPase i 99.8 6.3E-21 1.4E-25 197.1 13.6 79 427-506 167-249 (276)
402 cd03283 ABC_MutS-like MutS-lik 99.8 3.9E-21 8.4E-26 189.1 10.7 147 310-503 14-164 (199)
403 COG2401 ABC-type ATPase fused 99.8 9.4E-21 2E-25 196.3 9.7 201 290-508 356-588 (593)
404 cd03239 ABC_SMC_head The struc 99.8 7.2E-20 1.6E-24 176.9 14.6 73 431-504 95-172 (178)
405 cd03227 ABC_Class2 ABC-type Cl 99.8 8.6E-20 1.9E-24 173.8 12.3 138 314-504 12-155 (162)
406 cd03243 ABC_MutS_homologs The 99.8 3.8E-20 8.3E-25 182.5 5.6 151 317-515 23-176 (202)
407 cd03242 ABC_RecF RecF is a rec 99.8 1.9E-18 4.2E-23 178.0 17.9 190 312-507 11-269 (270)
408 cd03282 ABC_MSH4_euk MutS4 hom 99.8 3.2E-19 6.9E-24 176.0 10.9 142 310-497 16-159 (204)
409 PRK00349 uvrA excinuclease ABC 99.8 8.5E-19 1.8E-23 205.4 15.7 131 383-518 435-585 (943)
410 KOG0064 Peroxisomal long-chain 99.8 1.8E-19 4E-24 191.4 8.8 180 290-493 480-673 (728)
411 PRK00635 excinuclease ABC subu 99.8 3.7E-18 7.9E-23 208.0 21.2 200 311-519 1504-1797(1809)
412 TIGR00630 uvra excinuclease AB 99.8 2.1E-18 4.6E-23 201.7 16.2 131 384-518 434-583 (924)
413 COG0178 UvrA Excinuclease ATPa 99.8 4.7E-18 1E-22 189.1 17.9 128 384-519 783-920 (935)
414 KOG0066 eIF2-interacting prote 99.8 8.7E-19 1.9E-23 182.3 8.2 220 291-519 264-500 (807)
415 TIGR02858 spore_III_AA stage I 99.7 2.3E-17 5.1E-22 168.9 11.9 141 324-516 112-267 (270)
416 KOG0063 RNAse L inhibitor, ABC 99.7 8.2E-17 1.8E-21 167.8 13.2 176 310-503 349-531 (592)
417 cd03284 ABC_MutS1 MutS1 homolo 99.7 3.8E-17 8.2E-22 162.8 8.8 155 310-516 18-179 (216)
418 PRK00064 recF recombination pr 99.6 1.1E-14 2.3E-19 156.1 20.1 78 428-507 271-359 (361)
419 smart00534 MUTSac ATPase domai 99.6 1.5E-16 3.4E-21 154.7 4.8 93 414-510 47-142 (185)
420 cd03281 ABC_MSH5_euk MutS5 hom 99.6 2.8E-14 6.1E-19 141.9 12.9 137 311-496 17-161 (213)
421 TIGR01069 mutS2 MutS2 family p 99.5 1.2E-14 2.7E-19 168.5 9.8 131 316-493 314-449 (771)
422 PF02463 SMC_N: RecF/RecN/SMC 99.5 1.1E-14 2.3E-19 145.4 7.7 179 314-502 16-211 (220)
423 PTZ00132 GTP-binding nuclear p 99.5 2.4E-14 5.1E-19 142.4 7.9 146 325-477 11-204 (215)
424 KOG0063 RNAse L inhibitor, ABC 99.5 7.6E-14 1.6E-18 145.9 9.0 196 321-520 98-309 (592)
425 PRK07721 fliI flagellum-specif 99.5 2.5E-13 5.5E-18 147.8 13.5 175 310-516 146-341 (438)
426 cd00820 PEPCK_HprK Phosphoenol 99.5 5.2E-14 1.1E-18 123.6 6.2 76 310-394 2-78 (107)
427 PRK00409 recombination and DNA 99.4 2.6E-13 5.6E-18 158.0 9.4 151 312-510 317-470 (782)
428 cd03287 ABC_MSH3_euk MutS3 hom 99.4 2.2E-12 4.8E-17 128.9 13.6 138 310-494 18-159 (222)
429 TIGR00634 recN DNA repair prot 99.4 1.1E-12 2.5E-17 148.5 10.1 77 429-506 439-519 (563)
430 TIGR00618 sbcc exonuclease Sbc 99.4 1.4E-12 3E-17 157.8 10.8 83 423-505 943-1036(1042)
431 PRK06793 fliI flagellum-specif 99.4 3.4E-12 7.3E-17 138.1 12.0 168 291-512 130-305 (432)
432 PRK08533 flagellar accessory p 99.3 8.3E-12 1.8E-16 125.7 13.3 148 291-491 7-164 (230)
433 PHA02562 46 endonuclease subun 99.3 1.9E-12 4.1E-17 146.9 9.1 81 425-507 463-555 (562)
434 PRK14079 recF recombination pr 99.3 3.8E-11 8.2E-16 128.2 18.1 77 429-511 262-347 (349)
435 PRK13695 putative NTPase; Prov 99.3 9.8E-13 2.1E-17 126.6 5.2 152 325-510 2-156 (174)
436 cd01128 rho_factor Transcripti 99.3 2.6E-12 5.6E-17 130.5 8.1 177 311-507 5-211 (249)
437 cd03286 ABC_MSH6_euk MutS6 hom 99.3 2.7E-11 5.9E-16 120.7 14.5 140 310-496 17-160 (218)
438 PRK10869 recombination and rep 99.3 7.3E-12 1.6E-16 141.1 10.8 76 430-506 430-509 (553)
439 PF13304 AAA_21: AAA domain; P 99.3 1.5E-11 3.3E-16 122.5 9.7 66 427-492 233-302 (303)
440 cd01124 KaiC KaiC is a circadi 99.2 2E-11 4.4E-16 118.1 9.2 82 423-504 64-164 (187)
441 PRK06995 flhF flagellar biosyn 99.2 5.3E-11 1.2E-15 130.6 10.2 150 311-487 244-400 (484)
442 PRK10246 exonuclease subunit S 99.2 4.5E-11 9.7E-16 144.3 10.5 81 424-504 943-1032(1047)
443 PRK03918 chromosome segregatio 99.2 5E-11 1.1E-15 142.4 10.3 79 425-504 783-868 (880)
444 TIGR00606 rad50 rad50. This fa 99.2 6.4E-11 1.4E-15 146.3 11.3 73 425-497 1194-1278(1311)
445 COG0178 UvrA Excinuclease ATPa 99.1 4.1E-10 9E-15 126.5 14.6 134 384-520 428-579 (935)
446 PRK01156 chromosome segregatio 99.1 2.1E-10 4.6E-15 137.2 13.1 77 426-503 797-883 (895)
447 PRK13830 conjugal transfer pro 99.1 6.9E-10 1.5E-14 130.7 16.6 70 445-514 649-729 (818)
448 TIGR02168 SMC_prok_B chromosom 99.1 1.1E-10 2.4E-15 143.1 8.8 80 423-503 1082-1165(1179)
449 TIGR02788 VirB11 P-type DNA tr 99.1 1.3E-10 2.8E-15 122.2 7.6 144 315-517 136-280 (308)
450 cd01120 RecA-like_NTPases RecA 99.1 8.2E-10 1.8E-14 103.4 10.8 131 325-494 1-142 (165)
451 TIGR03238 dnd_assoc_3 dnd syst 99.0 1E-10 2.2E-15 126.5 3.0 52 310-363 19-71 (504)
452 PF12698 ABC2_membrane_3: ABC- 99.0 4.9E-11 1.1E-15 124.6 -0.4 166 32-223 178-344 (344)
453 TIGR02169 SMC_prok_A chromosom 99.0 1.1E-09 2.5E-14 134.3 9.6 81 423-504 1067-1151(1164)
454 PRK06067 flagellar accessory p 98.9 6.8E-09 1.5E-13 104.7 12.2 155 319-506 21-182 (234)
455 TIGR01026 fliI_yscN ATPase Fli 98.9 2.2E-08 4.9E-13 109.4 14.4 179 310-518 151-348 (440)
456 TIGR03881 KaiC_arch_4 KaiC dom 98.9 6.4E-10 1.4E-14 111.7 2.0 166 312-503 8-188 (229)
457 PRK07196 fliI flagellum-specif 98.9 1.9E-09 4.1E-14 117.0 5.7 172 310-512 143-335 (434)
458 TIGR02655 circ_KaiC circadian 98.9 8.7E-11 1.9E-15 130.8 -4.9 160 319-503 17-190 (484)
459 PRK02224 chromosome segregatio 98.8 5.5E-09 1.2E-13 125.0 9.1 78 427-505 778-869 (880)
460 COG3910 Predicted ATPase [Gene 98.8 7.7E-08 1.7E-12 91.6 14.4 83 424-507 123-206 (233)
461 cd02023 UMPK Uridine monophosp 98.8 3.8E-09 8.3E-14 103.7 5.2 114 325-464 1-114 (198)
462 cd01130 VirB11-like_ATPase Typ 98.8 7.4E-09 1.6E-13 100.9 5.7 84 312-397 14-99 (186)
463 TIGR00611 recf recF protein. A 98.8 1.1E-08 2.5E-13 109.8 7.7 63 429-493 274-345 (365)
464 cd01131 PilT Pilus retraction 98.8 2.1E-08 4.6E-13 98.7 8.9 57 440-503 66-122 (198)
465 smart00382 AAA ATPases associa 98.8 2.1E-07 4.7E-12 83.6 14.3 117 322-488 1-125 (148)
466 PRK06002 fliI flagellum-specif 98.7 2.2E-08 4.8E-13 108.8 8.9 85 290-380 138-230 (450)
467 PRK13891 conjugal transfer pro 98.6 7E-07 1.5E-11 106.0 17.7 54 441-494 680-735 (852)
468 cd01125 repA Hexameric Replica 98.6 1.5E-07 3.2E-12 95.3 8.7 46 445-491 108-161 (239)
469 PRK06315 type III secretion sy 98.6 1.3E-07 2.8E-12 103.1 7.9 167 310-515 152-347 (442)
470 PRK05399 DNA mismatch repair p 98.5 1.7E-07 3.8E-12 110.9 9.0 148 310-510 595-750 (854)
471 PRK09825 idnK D-gluconate kina 98.5 7.1E-08 1.5E-12 93.2 4.4 67 322-392 2-68 (176)
472 TIGR02680 conserved hypothetic 98.5 1.6E-07 3.4E-12 116.3 8.0 65 423-489 1240-1316(1353)
473 COG0419 SbcC ATPase involved i 98.5 3.3E-07 7.1E-12 109.9 10.1 79 426-505 811-898 (908)
474 cd01876 YihA_EngB The YihA (En 98.5 7.5E-08 1.6E-12 90.0 2.7 140 326-475 2-168 (170)
475 PRK13898 type IV secretion sys 98.5 4.7E-06 1E-10 98.7 18.4 51 444-494 638-690 (800)
476 TIGR02903 spore_lon_C ATP-depe 98.5 7.1E-07 1.5E-11 102.2 11.0 111 321-475 173-291 (615)
477 TIGR00416 sms DNA repair prote 98.5 1.7E-07 3.7E-12 103.4 5.7 161 312-522 82-263 (454)
478 PLN03210 Resistant to P. syrin 98.5 6.8E-07 1.5E-11 109.8 11.4 145 314-502 198-348 (1153)
479 TIGR00554 panK_bact pantothena 98.4 1.7E-07 3.6E-12 97.3 5.1 75 323-398 62-138 (290)
480 PRK00454 engB GTP-binding prot 98.4 1.2E-07 2.5E-12 92.3 3.1 65 407-476 125-192 (196)
481 PRK09270 nucleoside triphospha 98.4 3E-07 6.4E-12 92.6 5.8 73 322-398 32-108 (229)
482 PRK00300 gmk guanylate kinase; 98.3 7.7E-07 1.7E-11 87.7 6.8 28 321-348 3-30 (205)
483 TIGR01420 pilT_fam pilus retra 98.3 4.6E-06 1E-10 89.1 12.4 123 320-502 119-242 (343)
484 PRK10416 signal recognition pa 98.3 7.2E-07 1.6E-11 94.0 5.1 72 321-392 112-190 (318)
485 PF13558 SbcCD_C: Putative exo 98.3 1.7E-06 3.6E-11 74.2 5.8 52 424-475 26-90 (90)
486 TIGR03880 KaiC_arch_3 KaiC dom 98.2 2.2E-06 4.8E-11 85.8 7.6 57 447-503 106-177 (224)
487 TIGR00235 udk uridine kinase. 98.2 3.8E-07 8.2E-12 90.3 2.0 29 321-349 4-32 (207)
488 cd01854 YjeQ_engC YjeQ/EngC. 98.2 1.1E-06 2.4E-11 91.5 5.3 84 313-397 152-243 (287)
489 PRK08149 ATP synthase SpaL; Va 98.2 1.7E-06 3.7E-11 94.0 6.7 175 310-513 139-331 (428)
490 PRK07594 type III secretion sy 98.2 1.5E-06 3.4E-11 94.5 5.4 64 291-360 129-192 (433)
491 TIGR00152 dephospho-CoA kinase 98.2 2.1E-06 4.6E-11 83.6 5.8 70 434-505 61-133 (188)
492 cd01136 ATPase_flagellum-secre 98.2 2.8E-06 6.2E-11 89.4 6.9 176 310-515 57-251 (326)
493 PRK10078 ribose 1,5-bisphospho 98.2 2E-06 4.3E-11 83.7 5.3 53 323-378 2-55 (186)
494 cd01121 Sms Sms (bacterial rad 98.2 3.3E-06 7.2E-11 90.8 7.2 42 319-360 78-120 (372)
495 PRK14722 flhF flagellar biosyn 98.1 7.1E-06 1.5E-10 88.0 9.0 71 310-399 124-194 (374)
496 PRK01889 GTPase RsgA; Reviewed 98.1 2.9E-06 6.2E-11 91.1 5.8 79 312-393 184-262 (356)
497 TIGR02546 III_secr_ATP type II 98.1 4.4E-06 9.5E-11 91.4 7.1 75 310-385 133-214 (422)
498 PRK14723 flhF flagellar biosyn 98.1 1.4E-05 3.1E-10 92.2 11.3 70 312-400 174-243 (767)
499 PRK09862 putative ATP-dependen 98.1 2.4E-06 5.2E-11 95.0 4.9 62 294-361 187-248 (506)
500 cd00009 AAA The AAA+ (ATPases 98.1 1.2E-05 2.7E-10 72.8 8.6 54 436-490 72-131 (151)
No 1
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=7.5e-94 Score=873.38 Aligned_cols=577 Identities=28% Similarity=0.475 Sum_probs=467.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHchHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcceeeec
Q 007178 12 VSSIIGTLFFTWVVLQLFPVILTALVYEKQQKLRIMMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTL 91 (614)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~iV~Eke~~~k~~~~~~Gl~~~~yWl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (614)
....+.|+|+++.+++.+..+++.+|.|||.|+||.|++|||++++||++||+..++..++.++++.++ +....+|..
T Consensus 650 ~~~~~~pl~~~la~~~~~~~lv~~iV~EKE~rlKE~MkiMGL~~~~~w~sWfi~~~~~~~i~~~l~~~i--l~~~~~~~~ 727 (2272)
T TIGR01257 650 ILNRCFPIFMVLAWIYSVSMTVKSIVLEKELRLKETLKNQGVSNAVIWCTWFLDSFSIMSMSIFLLTIF--IMHGRILHY 727 (2272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH--HhhCceeec
Confidence 345567888888888777788999999999999999999999999999999987665444333222221 223467899
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhHHHHHHHHhhhcCCCcchhhhhhhcccchhHHHH
Q 007178 92 NSYGIQFVFYIIYINLQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQSFVEDPSFPRRWITAMELYPGFALYR 171 (614)
Q Consensus 92 ~~~~~~~~~~~ly~~s~i~~~~l~S~ff~~~~~a~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~ 171 (614)
+++.++|+++++|++++|++||++|+||++++.|+.++.+++|+..++..+ .....+ ..+.....+++++|+.+++.
T Consensus 728 s~~~~lfl~~~~y~~s~I~~~fliS~fFska~~A~~~~~li~f~~~lp~~~--~~~~~~-~~~~~~~~~~sL~sp~af~~ 804 (2272)
T TIGR01257 728 SDPFILFLFLLAFSTATIMQCFLLSTFFSKASLAAACSGVIYFTLYLPHIL--CFAWQD-RMTADLKTAVSLLSPVAFGF 804 (2272)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH--Hhhccc-ccCHHHHHHHHhcCHHHHHH
Confidence 999999999999999999999999999999999999998888876654322 111121 23333455678999999999
Q ss_pred HHHHHHhhhhcccCCCCCCCccccCCCC-----ccchHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-CCccccchhhcc
Q 007178 172 GLYEFGTYSFRGHSMGTDGMSWADLSDS-----ENGMKEVLIIMFVEWLLLLGIAYYVDKILSSGGA-KGPLYFLQNFKK 245 (614)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~-----~~~~~~~~~~m~~~~~l~~ll~~y~d~v~~~~~g-~~~~~f~~~~~~ 245 (614)
|+..+..++..+ .|++|+++..+ ..+++..++||++++++|++|+||+|+|+|++|| ++||||+. .+
T Consensus 805 g~~~i~~~e~~~-----~G~~w~n~~~~~~~~d~~s~~~~~~ml~~d~~lY~lL~~Yld~V~PgeyG~~kpw~F~~--~~ 877 (2272)
T TIGR01257 805 GTEYLVRFEEQG-----LGLQWSNIGNSPLEGDEFSFLLSMKMMLLDAALYGLLAWYLDQVFPGDYGTPLPWYFLL--QE 877 (2272)
T ss_pred HHHHHHHHhhhC-----CCcccccccccccCCCCccHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCccccc--ch
Confidence 999888776543 48999998643 2357788999999999999999999999999999 88999873 22
Q ss_pred cccCCC--CCCCCCCC--Ccc-cccccCCCchhHH--HHHHHhhhcCCCCCCeEEEEeEEEEcCCCCCCCccceeeeeeE
Q 007178 246 KSRSSF--RKPSLGRQ--DSK-VFVSMEKPDVTQE--RERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSL 318 (614)
Q Consensus 246 ~~~~~~--~~~~~~~~--~~~-~~~~~~~~~~~~e--~~~~~~~~~~~~~~~~i~~~~l~k~y~~~~~~~~~~~l~~isl 318 (614)
++|... +....... ... ...+.++++..+. ....+. ..+.....|+++||+|+|++. ++.||+|+||
T Consensus 878 syW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~--~~~~~~~~L~I~nLsK~y~~~----~k~aL~~lsl 951 (2272)
T TIGR01257 878 SYWLGGEGCSTREERALEKTEPLTEEMEDPEHPEGINDSFFER--ELPGLVPGVCVKNLVKIFEPS----GRPAVDRLNI 951 (2272)
T ss_pred hhhcCCccccccccccccccccccccccccccccccccccccc--ccCCCCceEEEEeEEEEecCC----CceEEEeeEE
Confidence 211100 00000000 000 0001111111000 000010 011234579999999999631 3679999999
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhc
Q 007178 319 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK 398 (614)
Q Consensus 319 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~ 398 (614)
++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.....++|+.+|||||++.+++.+||+||+.++++++
T Consensus 952 ~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lk 1031 (2272)
T TIGR01257 952 TFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLK 1031 (2272)
T ss_pred EEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999997666677889999999999999999999999999888
Q ss_pred CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC
Q 007178 399 NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ 478 (614)
Q Consensus 399 ~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~ 478 (614)
+.+.++.+++++++++.+||. +++++++++|||||||||+||+||+++|+++||||||+||||.+|+.+|++|++.++
T Consensus 1032 g~~~~~~~~~v~~lL~~vgL~--~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~ 1109 (2272)
T TIGR01257 1032 GRSWEEAQLEMEAMLEDTGLH--HKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRS 1109 (2272)
T ss_pred CCCHHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhC
Confidence 876666778899999999997 478999999999999999999999999999999999999999999999999999878
Q ss_pred CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHhcCCcEEEEEEeCCC-------------------------
Q 007178 479 GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTMTTSAD------------------------- 533 (614)
Q Consensus 479 g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~~~~~l~~~~~~~------------------------- 533 (614)
|+|||++||++++++.+||||++|++|+++|.|+++++|++||.||.+++..+..
T Consensus 1110 g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~g~gy~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1189 (2272)
T TIGR01257 1110 GRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGTGFYLTLVRKMKNIQSQRGGCEGTCSCTSKGFSTRCP 1189 (2272)
T ss_pred CCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHhcCCcEEEEEEecccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999998864320
Q ss_pred --------------cHHHHHHHHHhcCCCceeEEEeccEEEEEecCCCC---CHHHHHHHHHHHhcCCceeEEEeccCCH
Q 007178 534 --------------HEEEVESMAKRLSPGANKIYQISGTQKFELPKQEV---RVSDVFQAVEEAKSRFTVFAWGLADTTL 596 (614)
Q Consensus 534 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~i~~~~~~~~tL 596 (614)
+..++.++++++.|+++...+.+++..|.+|.+.. .++.+|+.||+.+++++|.+|++++|||
T Consensus 1190 ~~~~~~~~~~~~~~~~~~i~~~v~~~iP~a~l~~~~g~el~y~LP~~~~~~~~f~~lf~~Le~~~~~lgi~sygis~tTL 1269 (2272)
T TIGR01257 1190 ARVDEITPEQVLDGDVNELMDLVYHHVPEAKLVECIGQELIFLLPNKNFKQRAYASLFRELEETLADLGLSSFGISDTPL 1269 (2272)
T ss_pred cccccccccccccccHHHHHHHHHHhCCCcEEEeccCCEEEEEecccccccchHHHHHHHHHhhHhhCCCceEEeecCCH
Confidence 23457788889999999998899999999998753 4999999999999999999999999999
Q ss_pred HHHHHHhhcccc
Q 007178 597 EDVFIKVARHAQ 608 (614)
Q Consensus 597 E~vFl~~~~~~~ 608 (614)
||||++++++.+
T Consensus 1270 EeVFlkv~~~~~ 1281 (2272)
T TIGR01257 1270 EEIFLKVTEDAD 1281 (2272)
T ss_pred HHHHHHhhhhcc
Confidence 999999987643
No 2
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=6.7e-85 Score=795.08 Aligned_cols=556 Identities=30% Similarity=0.501 Sum_probs=445.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHchHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcceee-eccchHH
Q 007178 18 TLFFTWVVLQLFPVILTALVYEKQQKLRIMMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFF-TLNSYGI 96 (614)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~iV~Eke~~~k~~~~~~Gl~~~~yWl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 96 (614)
.+++.++++++.+.|+..+|+||++|+||+|.++|++..+||+++|+||++.+++.+++++++..++...-| ...+++.
T Consensus 1683 ai~ii~~~sfi~asfv~~~V~ER~skaK~lQ~vSGv~~~~YWls~fl~D~~~y~i~~~~~i~i~~~f~~~~~~~~~~l~~ 1762 (2272)
T TIGR01257 1683 AICVIFAMSFVPASFVLYLIQERVNKAKHLQFISGVSPTTYWLTNFLWDIMNYAVSAGLVVGIFIGFQKKAYTSPENLPA 1762 (2272)
T ss_pred HHHHHHHHHHHHHHHheeeehHHhhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhcCcchHHH
Confidence 345555666667789999999999999999999999999999999999999988877766655555554433 3456777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhHHHH---HHHHhhhcCCCc---chhhhhhhcccchhHHH
Q 007178 97 QFVFYIIYINLQIALAFLVAALFSNVKTASVIGYICVFGTGLLGA---FLLQSFVEDPSF---PRRWITAMELYPGFALY 170 (614)
Q Consensus 97 ~~~~~~ly~~s~i~~~~l~S~ff~~~~~a~~~~~i~~~~~~~~~~---~~~~~~~~~~~~---~~~~~~~~~l~P~~~~~ 170 (614)
+++++++||+|.++++|++|++|+++.+|.+...++.+..|+... +++..+..+... ...+.+++.++|+||++
T Consensus 1763 ~~lll~lyG~a~ip~tYl~SflF~~~~~A~~~~~~in~~~G~~~~i~~~il~~~~~~~~~~~~~~~l~~if~i~P~f~lg 1842 (2272)
T TIGR01257 1763 LVALLMLYGWAVIPMMYPASFLFDVPSTAYVALSCANLFIGINSSAITFVLELFENNRTLLRFNAMLRKLLIVFPHFCLG 1842 (2272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHeeCchhhhH
Confidence 888999999999999999999999999998766555554444322 222222111111 22334557789999999
Q ss_pred HHHHHHHhhhhcc-------cCCCCCCCccccCCCCccchHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhh
Q 007178 171 RGLYEFGTYSFRG-------HSMGTDGMSWADLSDSENGMKEVLIIMFVEWLLLLGIAYYVDKILSSGGAKGPLYFLQNF 243 (614)
Q Consensus 171 ~~~~~~~~~~~~~-------~~~~~~~~~w~~~~~~~~~~~~~~~~m~~~~~l~~ll~~y~d~v~~~~~g~~~~~f~~~~ 243 (614)
+|+..++...... .....+.+.|+. .+..+++|++++++|+++.+++|.-. +.+.+
T Consensus 1843 ~gl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~~ll~m~~~~iv~flLl~~ie~~~----------~~~~~ 1905 (2272)
T TIGR01257 1843 RGLIDLALSQAVTDVYAQFGEEHSANPFQWDL-------IGKNLVAMAVEGVVYFLLTLLIQHHF----------FLSRW 1905 (2272)
T ss_pred HHHHHHHHhHHHHHHHHhhcccccCCccchhh-------ccHHHHHHHHHHHHHHHHHHHHHhhh----------hhhhh
Confidence 9998886543211 111112345543 34568899999999999999999632 11000
Q ss_pred cccccCCCCCCCCCCCCcccccccCCCchhHHHHHHHhhhcCCCCCCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCC
Q 007178 244 KKKSRSSFRKPSLGRQDSKVFVSMEKPDVTQERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSG 323 (614)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~G 323 (614)
.+. +.. .....+|+||.+|++++... .....+++++||+|+|+++ ++.||+|+||+|++|
T Consensus 1906 ~~~-------~~~------~~~~~eD~DV~~Er~rV~~~---~~~~~~L~v~nLsK~Y~~~----~~~aL~~ISf~I~~G 1965 (2272)
T TIGR01257 1906 IAE-------PAK------EPIFDEDDDVAEERQRIISG---GNKTDILRLNELTKVYSGT----SSPAVDRLCVGVRPG 1965 (2272)
T ss_pred ccc-------cCc------CcCCCchhHHHHHHHHHhcc---CCCCceEEEEEEEEEECCC----CceEEEeeEEEEcCC
Confidence 000 000 01124788999999998642 2234579999999999742 257999999999999
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCch
Q 007178 324 ECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGP 403 (614)
Q Consensus 324 ei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~ 403 (614)
|++||+||||||||||+|+|+|+++|++|+|+++|+++.+...+.+++||||||++.+++.+|++||+.++++++|.+.+
T Consensus 1966 Ei~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~ 2045 (2272)
T TIGR01257 1966 ECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAE 2045 (2272)
T ss_pred cEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHH
Confidence 99999999999999999999999999999999999998765556778899999999999999999999999998887766
Q ss_pred hHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceE
Q 007178 404 ALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAI 482 (614)
Q Consensus 404 ~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tI 482 (614)
+.+++++++++.+||. +++|+++++|||||||||++|+||+++|+++||||||+||||.+|+.+|++|++. ++|+||
T Consensus 2046 ~~~~~v~~lLe~lgL~--~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TI 2123 (2272)
T TIGR01257 2046 EIEKVANWSIQSLGLS--LYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAV 2123 (2272)
T ss_pred HHHHHHHHHHHHcCCH--HHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 6777889999999997 4889999999999999999999999999999999999999999999999999986 569999
Q ss_pred EEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHhcCCcEEEEEEeCCCcH------HHHHHHHHhcCCCceeEEEec
Q 007178 483 ILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTMTTSADHE------EEVESMAKRLSPGANKIYQIS 556 (614)
Q Consensus 483 il~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 556 (614)
|+|||+|+|++++|||+++|++|+++|.|++++++++++.+|.+++..+.... +.+...+...+|++...+.+.
T Consensus 2124 ILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g~g~~l~i~~~~~~~~~~~~~~~v~~~i~~~fp~a~~~e~~~ 2203 (2272)
T TIGR01257 2124 VLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFGDGYIVTMKIKSPKDDLLPDLNPVEQFFQGNFPGSVQRERHY 2203 (2272)
T ss_pred EEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHHhCCceEEEEEEcCcchhhhhHHHHHHHHHhhcCccceeecccc
Confidence 99999999999999999999999999999999999999999998887543221 123455666788877665556
Q ss_pred cEEEEEecCCCCCHHHHHHHHHHHhcCCceeEEEeccCCHHHHHHHhhcccccccCCC
Q 007178 557 GTQKFELPKQEVRVSDVFQAVEEAKSRFTVFAWGLADTTLEDVFIKVARHAQAFEDLP 614 (614)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~tLE~vFl~~~~~~~~~~~~~ 614 (614)
+...|.+|.. .++++|+.+++.+.++++.+|+++|+||||||++++++++..+++|
T Consensus 2204 ~~l~~~i~~~--~~~~if~~L~~~k~~l~I~dysvsqtSLE~VFl~l~~~q~~~~~~~ 2259 (2272)
T TIGR01257 2204 NMLQFQVSSS--SLARIFQLLISHKDSLLIEEYSVTQTTLDQVFVNFAKQQTETYDLP 2259 (2272)
T ss_pred ceEEEEeCcc--cHHHHHHHHHhcCCCCCeEEEEcCCCCHHHHHHHHhccccccCCCC
Confidence 6677888753 6899999999888889999999999999999999999998888776
No 3
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=4.1e-85 Score=767.13 Aligned_cols=583 Identities=41% Similarity=0.664 Sum_probs=474.3
Q ss_pred CCCCcccccccH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHchHcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 007178 1 MPKTDSKLKLDV-SSIIGTLFFTWVVLQLFPVILTALVYEKQQKLRIMMKMHGLGDGPYWLISYAYFFCISSIYMLCFVV 79 (614)
Q Consensus 1 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iV~Eke~~~k~~~~~~Gl~~~~yWl~~~~~~~~~~~~~~~~~~~ 79 (614)
||+++..+..+. ..++++.++.++++..+|.+....|.||+.|+||+|.++|+++.+||++++.||++++++.++++.+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~e~~~~~~~~~~i~G~~~~~yw~~~~~~d~~~~~l~~~~~~~ 362 (885)
T KOG0059|consen 283 MPLSGAQLSLDLLADLLGALFLLFVFLLLFSVFLLSLILERQQRLRHQQLIAGLSPSTYWLFALVWDLLLYLLILLILLI 362 (885)
T ss_pred cCccHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777777777 7899999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHhhhcceeeeccchHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhHHHHHHHHhhhcCCCcchhhhh
Q 007178 80 FGSVIGLRFFTLNSYGIQFVFYIIYINLQIALAFLVAALFSNVKTASVIGYICVFGTGLLGAFLLQSFVEDPSFPRRWIT 159 (614)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~ly~~s~i~~~~l~S~ff~~~~~a~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (614)
++.+++ ++..++..++++++++|+.+.++++|+.|++|+++.+|+++..++.+++++...++...+......+..+..
T Consensus 363 ~~~~f~--~~~~~~~~~~~~~~~l~~~s~i~l~y~~s~~f~~~~~~~v~~~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 440 (885)
T KOG0059|consen 363 FVLIFG--FFAGNNTVIILLLLLLYIRSAIPLTYILSFIFSKESTASVILSIYNLISGLLVFFAVFILQSFANGRTGDIF 440 (885)
T ss_pred Hhheee--cccccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCceeehhhHHHHHHHHHHHHHhhhhhcccccHHHHH
Confidence 877776 677788889999999999999999999999999999999888777766665443333333333444444555
Q ss_pred hhcccchhHHHHHHHHHHhhhhcccCCCCCCCccccCCCCcc--c---------hHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007178 160 AMELYPGFALYRGLYEFGTYSFRGHSMGTDGMSWADLSDSEN--G---------MKEVLIIMFVEWLLLLGIAYYVDKIL 228 (614)
Q Consensus 160 ~~~l~P~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~--~---------~~~~~~~m~~~~~l~~ll~~y~d~v~ 228 (614)
...+.|.+.+..+.+.+.............++.|..+..... . ....+..+..+++.+.++...+..
T Consensus 441 ~~~l~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~-- 518 (885)
T KOG0059|consen 441 SMILVPGFTLFLPLYELSSLAAEGNLNLNDGMSLEVLGNDESFYTLLLEWLLPLIGRRYLALVTEGVKDDLFFLLIFV-- 518 (885)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHhhhcchhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--
Confidence 556778777776666655544433322344667776543200 0 111122233333333333322211
Q ss_pred CCCCCCCccccchhhcccccCCCCCCCCCCC-CcccccccCCCchhHHHHHHHhhhcCCCCCCeEEEEeEEEEcCCCCCC
Q 007178 229 SSGGAKGPLYFLQNFKKKSRSSFRKPSLGRQ-DSKVFVSMEKPDVTQERERVEQLLLEPGTSHAIISDNLRKIYPGRDGN 307 (614)
Q Consensus 229 ~~~~g~~~~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~~~~l~k~y~~~~~~ 307 (614)
++.++.+. . ..+. .......+|+.|+..|+.++...........++.++|++|.|+++
T Consensus 519 -------------~~~~~~~~---~--~~~~~~~~~~~~~e~~~v~~e~~~v~~~~~~~~~~~~~~~~~L~k~y~~~--- 577 (885)
T KOG0059|consen 519 -------------PFKRRMRA---L--TQNMLKGFEPVEVEKLDVARERNRVETLLFRSSYSSALVLNNLSKVYGGK--- 577 (885)
T ss_pred -------------hhcccccc---c--cccccCCCcCcchhhHHHHHHHHhhhhhhhcccccceEEEcceeeeecch---
Confidence 11111010 0 0011 111223457788888887776654444445689999999999863
Q ss_pred CccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC--cHHHhhcceEEEcCCCCCCCCC
Q 007178 308 PEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT--DMDRIYTSMGVCPQEDLLWETL 385 (614)
Q Consensus 308 ~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~--~~~~~~~~ig~~~Q~~~l~~~l 385 (614)
+.|++++|+.|++|||+|++|||||||||++|||+|..+|++|++.++|+++.. +..++++.+|||||++.+++.|
T Consensus 578 --~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~l 655 (885)
T KOG0059|consen 578 --DGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEEL 655 (885)
T ss_pred --hhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhc
Confidence 229999999999999999999999999999999999999999999999999976 4445899999999999999999
Q ss_pred CHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHH
Q 007178 386 TGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPAS 465 (614)
Q Consensus 386 Tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~ 465 (614)
|++||+.++++++|+++++.++.++++++.++|. ++++++++.||||||||+++|.|++++|++++|||||+||||.+
T Consensus 656 T~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~--~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~a 733 (885)
T KOG0059|consen 656 TGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLG--PYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKA 733 (885)
T ss_pred cHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCCh--hhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHH
Confidence 9999999999999999999999999999999997 48999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHhcCCcEEEEEEeCCCcH-HHHHHHHH
Q 007178 466 RNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTMTTSADHE-EEVESMAK 543 (614)
Q Consensus 466 ~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~~~~~l~~~~~~~~~-~~~~~~~~ 543 (614)
||.+|+++++.+ +|++||+|||+|||+|.+|||++||.+|+++|.|+++++|++||.+|.+++..+.... +.+...++
T Consensus 734 rr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsrfG~gy~l~~~~~~~~~~~~v~~~~~ 813 (885)
T KOG0059|consen 734 RRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSRYGSGYTLTVRIKELPEVSEVEKLLQ 813 (885)
T ss_pred HHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhhcCCcEEEEEEECCCcccchHHHHHH
Confidence 999999999975 4669999999999999999999999999999999999999999999999999876544 47788889
Q ss_pred hcCCCceeEEEeccEEEEEecCCCC-CHHHHHHHHHHHhcCCceeEEEeccCCHHHHHHHhhcccccccC
Q 007178 544 RLSPGANKIYQISGTQKFELPKQEV-RVSDVFQAVEEAKSRFTVFAWGLADTTLEDVFIKVARHAQAFED 612 (614)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~i~~~~~~~~tLE~vFl~~~~~~~~~~~ 612 (614)
+.+|++...+++.....|++|.++. .++++|..+|..+..+++++|+++|+||||||++++++++..++
T Consensus 814 ~~~p~a~~~~~~~~~~~~~ip~~~~~~~~~vF~~le~~~~~~~i~dyslsq~tLe~VFi~~a~~q~~~~~ 883 (885)
T KOG0059|consen 814 NRFPGAVLKERHAGLLAFEIPKDEVVSLSEVFLALEKAKESFGIEDYSLSQTTLEDVFLILAKTQEDDNS 883 (885)
T ss_pred HhCCCcchhhhhhceEEEEcccchhhHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHHHHHhcccccccc
Confidence 9999999988888888999997655 46799999999999999999999999999999999999876654
No 4
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.4e-59 Score=446.27 Aligned_cols=222 Identities=30% Similarity=0.470 Sum_probs=209.2
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC--cHHHh
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT--DMDRI 368 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~--~~~~~ 368 (614)
+|+++|++|+||+ ..+|+|+|++|++||+++|+||+|||||||+|||.||.+|++|+|.++|+++.. +..++
T Consensus 2 mi~i~~l~K~fg~------~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~ 75 (240)
T COG1126 2 MIEIKNLSKSFGD------KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKL 75 (240)
T ss_pred eEEEEeeeEEeCC------eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHH
Confidence 6899999999984 689999999999999999999999999999999999999999999999987743 56778
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHh-hhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhC
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYG-RLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 447 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~ 447 (614)
|+++|+|||+.+|||++||.||+.+.. ..++.+++++++++.++|+++||. +++|.++.+||||||||++|||||+.
T Consensus 76 R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~--~ka~~yP~qLSGGQqQRVAIARALaM 153 (240)
T COG1126 76 RRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLA--DKADAYPAQLSGGQQQRVAIARALAM 153 (240)
T ss_pred HHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCch--hhhhhCccccCcHHHHHHHHHHHHcC
Confidence 999999999999999999999999864 467888999999999999999997 48999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHhc
Q 007178 448 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 520 (614)
Q Consensus 448 ~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 520 (614)
+|+++++|||||+|||+...++.+.++++ ++|.|.+++||+|..|.+.||||++|++|++++.|+++++..+.
T Consensus 154 ~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 154 DPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred CCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 99999999999999999999999999996 57999999999999999999999999999999999999987653
No 5
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=5.9e-59 Score=453.62 Aligned_cols=227 Identities=30% Similarity=0.473 Sum_probs=215.3
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhh
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 369 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~ 369 (614)
||+++|++|+|++ +.|++|+||+|++||+++++||+||||||+||||.++++||+|+|+++|+++.+ +..++|
T Consensus 1 MI~~~nvsk~y~~------~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LR 74 (309)
T COG1125 1 MIEFENVSKRYGN------KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELR 74 (309)
T ss_pred CceeeeeehhcCC------ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHH
Confidence 5889999999983 679999999999999999999999999999999999999999999999999976 567899
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCC
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 449 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p 449 (614)
++|||+-|...|||++||.||+.+...+.|.++++.+++++++++.+||++.+++++++++||||||||+.+||||+.+|
T Consensus 75 r~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP 154 (309)
T COG1125 75 RKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADP 154 (309)
T ss_pred HhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999998656999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHhcCCc
Q 007178 450 KVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGS 523 (614)
Q Consensus 450 ~vllLDEPtsgLD~~~~~~i~~~l~~~~-~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~~~ 523 (614)
+++++|||+++|||.+|.++.+.+.+++ + |+||+++||||+||..++|||++|++|+++..++|+++..+..+.
T Consensus 155 ~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~ 230 (309)
T COG1125 155 PILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPAND 230 (309)
T ss_pred CeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccHH
Confidence 9999999999999999999999999864 3 999999999999999999999999999999999999998765443
No 6
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=8.2e-58 Score=442.86 Aligned_cols=295 Identities=28% Similarity=0.509 Sum_probs=253.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhc
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 370 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~ 370 (614)
++++++++|+|+ ++.|++|+||++++|+++|++|||||||||++|||.|++.||+|+|.++|.+++. ..+.
T Consensus 2 ~L~ie~vtK~Fg------~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~---~~~~ 72 (300)
T COG4152 2 ALEIEGVTKSFG------DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ---EIKN 72 (300)
T ss_pred ceEEecchhccC------ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh---hhhh
Confidence 589999999998 4789999999999999999999999999999999999999999999999998864 3456
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCC
Q 007178 371 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 450 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~ 450 (614)
+|||+|.+..||+.+||.|.|.|+++++|++.++.+++++.+|+++++. ++..+++.+||.|++||+.+..|++++|+
T Consensus 73 rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~--~~~~~kIk~LSKGnqQKIQfisaviHePe 150 (300)
T COG4152 73 RIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIV--GKKTKKIKELSKGNQQKIQFISAVIHEPE 150 (300)
T ss_pred hcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcccc--ccccchHHHhhhhhhHHHHHHHHHhcCCC
Confidence 7999999999999999999999999999999999999999999999997 48999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHhcCCcEEEEEE
Q 007178 451 VVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTMT 529 (614)
Q Consensus 451 vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~~~~~l~~~ 529 (614)
++|||||+|||||.+.+.+.+.+.+++ +|.|||++||.|+.++++||++++|++|+.+.+|+.+++++.+|.... .+.
T Consensus 151 LlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~Gkk~~-~ie 229 (300)
T COG4152 151 LLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFGKKRL-VIE 229 (300)
T ss_pred EEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcCCceE-EEe
Confidence 999999999999999999999999975 699999999999999999999999999999999999999999987643 333
Q ss_pred eCCCcHHHHHHHHHhcCCCceeEEEe-ccEEEEEecCCCCCHHHHHHHHHHHhcCCceeEEEeccCCHHHHHHHhhccc
Q 007178 530 TSADHEEEVESMAKRLSPGANKIYQI-SGTQKFELPKQEVRVSDVFQAVEEAKSRFTVFAWGLADTTLEDVFIKVARHA 607 (614)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~tLE~vFl~~~~~~ 607 (614)
.+.. .+++. ..|+...+... .+...+. +..+..-.++|+.+. .+..|..|.+..|||+|+|+.-+...
T Consensus 230 s~~s-~eeL~-----~ipgi~~~~~~~~G~~~i~-ie~e~~a~~ifq~~a---~~g~i~~Fe~~~PsL~diFi~~~g~~ 298 (300)
T COG4152 230 SDLS-LEELA-----NIPGILKITETKDGSWRIQ-IENETVAREIFQEVA---RDGYIQRFELQEPSLHDIFIEKVGGV 298 (300)
T ss_pred ccCc-hHHHh-----cCCCceeeeeccCCceEee-cccchHHHHHHHHHh---ccceeEEEeecCCCHHHHHHHHhccc
Confidence 2211 11221 24766555442 3333333 333334566777654 46679999999999999999876653
No 7
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=5.8e-57 Score=468.06 Aligned_cols=287 Identities=37% Similarity=0.675 Sum_probs=239.7
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhc
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 370 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~ 370 (614)
.++++|++|+|++ ++.||+|+||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|+++..+..+.++
T Consensus 4 ~i~~~~l~k~~~~-----~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~ 78 (293)
T COG1131 4 VIEVRNLTKKYGG-----DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRR 78 (293)
T ss_pred eeeecceEEEeCC-----CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHh
Confidence 5788999999983 26799999999999999999999999999999999999999999999999998776778889
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCC
Q 007178 371 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 450 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~ 450 (614)
++||+||++.+++.+||+||+.|++++++.+.+..+++++++++.++|.+ .+++++++||+|||||++||+||+++|+
T Consensus 79 ~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~~lS~G~kqrl~ia~aL~~~P~ 156 (293)
T COG1131 79 RIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLED--KANKKVRTLSGGMKQRLSIALALLHDPE 156 (293)
T ss_pred heEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCch--hhCcchhhcCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999998766566789999999999974 5689999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc-CC-ceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHhcCCcEEEEE
Q 007178 451 VVYMDEPSTGLDPASRNNLWNVVKRAK-QG-RAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTM 528 (614)
Q Consensus 451 vllLDEPtsgLD~~~~~~i~~~l~~~~-~g-~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~~~~~l~~ 528 (614)
++||||||+||||.+++++|++|++++ +| +||++|||.+++++.+||||++|++|++++.|+++++.+.++.......
T Consensus 157 lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~~~~~~~~~~ 236 (293)
T COG1131 157 LLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIEL 236 (293)
T ss_pred EEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHhhccCceEEE
Confidence 999999999999999999999999964 55 8999999999999999999999999999999999999888765543333
Q ss_pred EeCCCcHHHHHHHHHhcCCCceeEEEeccEEEEEecCCCCCHHHHHHHHHHHhcCCceeEEEeccCCHHHHHHHhhc
Q 007178 529 TTSADHEEEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTVFAWGLADTTLEDVFIKVAR 605 (614)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~tLE~vFl~~~~ 605 (614)
......... .. .... ...+ .....++...+.+ .+..+..+...+.+||++|+..++
T Consensus 237 ~~~~~~~~~---~~----~~~~---~~~~---------~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~ 292 (293)
T COG1131 237 EPERLELAE---LL----EGLK---LVKG---------EEELAEILEALLE--EGVKIESIEVKEPSLEDVFLELTG 292 (293)
T ss_pred ecccccchh---hh----hccc---cccc---------chhHHHHHHHHHH--cCCceeeeecCCCCHHHHHHHHcc
Confidence 221111110 00 0000 0000 1223444444433 355666889999999999998765
No 8
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=2.1e-56 Score=467.53 Aligned_cols=299 Identities=34% Similarity=0.532 Sum_probs=239.9
Q ss_pred CCCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHH
Q 007178 288 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDR 367 (614)
Q Consensus 288 ~~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~ 367 (614)
+..+++++||+|+|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.....+
T Consensus 4 ~~~~i~i~~l~k~~~~------~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~ 77 (306)
T PRK13537 4 SVAPIDFRNVEKRYGD------KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARH 77 (306)
T ss_pred CCceEEEEeEEEEECC------eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHH
Confidence 3457999999999973 5799999999999999999999999999999999999999999999999998766566
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhC
Q 007178 368 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 447 (614)
Q Consensus 368 ~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~ 447 (614)
.++++||+||++.+++.+|++||+.+++++++.+..+.+++++++++.++|. +..++++++||||||||++||+||++
T Consensus 78 ~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~la~aL~~ 155 (306)
T PRK13537 78 ARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLE--NKADAKVGELSGGMKRRLTLARALVN 155 (306)
T ss_pred HHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hHhcCchhhCCHHHHHHHHHHHHHhC
Confidence 7889999999999999999999999988887766666677889999999997 47899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHhcCCcEEE
Q 007178 448 NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVF 526 (614)
Q Consensus 448 ~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~~~~~l 526 (614)
+|+++||||||+||||.+++.+|++|++++ +|+|||++||+++|++.+||||++|++|++++.|+++++.+.......+
T Consensus 156 ~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~~~~~~~~ 235 (306)
T PRK13537 156 DPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIESEIGCDVI 235 (306)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhccCCCeEE
Confidence 999999999999999999999999999874 5999999999999999999999999999999999999998765443344
Q ss_pred EEEeCCCcHHHHHHHHHhcCCCceeEEEeccEEEEEecCCCCCHHHHHHHHHHHhcCCceeEEEeccCCHHHHHHHhhcc
Q 007178 527 TMTTSADHEEEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTVFAWGLADTTLEDVFIKVARH 606 (614)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~tLE~vFl~~~~~ 606 (614)
.+... .......... +........+.. +.+... ...++.+.+.. ...+ .+...++||||+|++++++
T Consensus 236 ~~~~~--~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~--~~~~~~~~l~~---~~~~-~~~~~~~sLed~f~~~~~~ 302 (306)
T PRK13537 236 EIYGP--DPVALRDELA---PLAERTEISGET--LFCYVR--DPEPLHARLKG---RAGL-RYLHRPANLEDVFLRLTGR 302 (306)
T ss_pred EEEcC--ChHHHHHHhh---hccceeeeeCCE--EEEEeC--CHHHHHHHHHh---ccCc-eEEecCCCHHHHHHHHhCc
Confidence 44322 1111111111 211111111222 222211 13444444432 1123 3445789999999999865
Q ss_pred c
Q 007178 607 A 607 (614)
Q Consensus 607 ~ 607 (614)
.
T Consensus 303 ~ 303 (306)
T PRK13537 303 E 303 (306)
T ss_pred c
Confidence 4
No 9
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-58 Score=436.53 Aligned_cols=224 Identities=33% Similarity=0.572 Sum_probs=215.1
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhc
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 370 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~ 370 (614)
|+++++++|+|+. ..+|++|+||++++||++||+|||||||||+||||++++.|++|.|+++|.|..+++..+|+
T Consensus 1 Ml~v~~l~K~y~~-----~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr 75 (245)
T COG4555 1 MLEVTDLTKSYGS-----KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRR 75 (245)
T ss_pred CeeeeehhhhccC-----HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhh
Confidence 5789999999984 35699999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCC
Q 007178 371 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 450 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~ 450 (614)
+||+++....+|..||++|||.|++++.++.+.+.+.+++++.+.++|. +++|++++++|.|||||++|||||+++|+
T Consensus 76 ~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~--~~~~rRv~~~S~G~kqkV~iARAlvh~P~ 153 (245)
T COG4555 76 KIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLL--EYLDRRVGEFSTGMKQKVAIARALVHDPS 153 (245)
T ss_pred hcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChH--HHHHHHHhhhchhhHHHHHHHHHHhcCCC
Confidence 9999998899999999999999999999999999999999999999997 59999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHhcC
Q 007178 451 VVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG 521 (614)
Q Consensus 451 vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~ 521 (614)
+++|||||||||..+++.+.+.+++.+ +|++||++||.|+|++++|||++++++|+++..|+++.+..+.+
T Consensus 154 i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~~ 225 (245)
T COG4555 154 ILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTV 225 (245)
T ss_pred eEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHHh
Confidence 999999999999999999999999986 59999999999999999999999999999999999999988754
No 10
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-57 Score=455.37 Aligned_cols=226 Identities=31% Similarity=0.518 Sum_probs=211.4
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC----cHH
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT----DMD 366 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~----~~~ 366 (614)
+|++++++|.|++. +++...||+|+||+|++|||+||+|++|||||||+|+|.+|.+||+|+|.++|+++.. ...
T Consensus 1 mI~l~~vsK~~~~~-~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr 79 (339)
T COG1135 1 MIELENVSKTFGQT-GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELR 79 (339)
T ss_pred CeEEEeeeeeeccC-CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHH
Confidence 58999999999864 3334689999999999999999999999999999999999999999999999998854 446
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHh
Q 007178 367 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 446 (614)
Q Consensus 367 ~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~ 446 (614)
..|++||++||++.|+...||+||+.|+..+.|.++++.++++.++|+.+||. +++++++.+|||||||||+|||||+
T Consensus 80 ~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~--dk~~~yP~qLSGGQKQRVaIARALa 157 (339)
T COG1135 80 QLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLS--DKADRYPAQLSGGQKQRVAIARALA 157 (339)
T ss_pred HHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCCh--hhhccCchhcCcchhhHHHHHHHHh
Confidence 67899999999999999999999999999999999999999999999999998 4899999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 447 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 447 ~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~--~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
.+|++||.|||||+|||...+.+.++|+++. -|.||+++||.||.+.++|||+++|++|++++.|+..++..+
T Consensus 158 ~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~ 232 (339)
T COG1135 158 NNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFAN 232 (339)
T ss_pred cCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcC
Confidence 9999999999999999999999999999964 499999999999999999999999999999999999887544
No 11
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=8.9e-55 Score=454.60 Aligned_cols=298 Identities=29% Similarity=0.462 Sum_probs=242.8
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhc
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 370 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~ 370 (614)
.++++|++|+|++ +.+++|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++.....++++
T Consensus 2 ~l~~~~l~~~~~~------~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~ 75 (301)
T TIGR03522 2 SIRVSSLTKLYGT------QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQR 75 (301)
T ss_pred EEEEEEEEEEECC------EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHh
Confidence 4889999999973 5799999999999999999999999999999999999999999999999998765556778
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCC
Q 007178 371 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 450 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~ 450 (614)
.+||+||++.+++.+|+.||+.+.+.+++.+.++.+++++++++.+||.+ ..++++++||||||||+++|+||+++|+
T Consensus 76 ~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~--~~~~~~~~LS~G~~qrv~la~al~~~p~ 153 (301)
T TIGR03522 76 NIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRP--EQHKKIGQLSKGYRQRVGLAQALIHDPK 153 (301)
T ss_pred ceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch--HhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999888777665666778899999999973 7899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHhcCCcEEEEEEe
Q 007178 451 VVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTMTT 530 (614)
Q Consensus 451 vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~~~~~l~~~~ 530 (614)
++||||||+||||.+++.+++.++++++++|||++||++++++++|||+++|++|++++.|++++++++... ..+.+..
T Consensus 154 lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~-~~~~i~~ 232 (301)
T TIGR03522 154 VLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAANKK-QVIEVEF 232 (301)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHhcCC-ceEEEEe
Confidence 999999999999999999999999987789999999999999999999999999999999999999876442 3344443
Q ss_pred CCCcHHHHHHHHHhcCCCceeEEE-eccEEEEEecCCCCCHHHHHHHHHHHhcCCceeEEEeccCCHHHHHHHh
Q 007178 531 SADHEEEVESMAKRLSPGANKIYQ-ISGTQKFELPKQEVRVSDVFQAVEEAKSRFTVFAWGLADTTLEDVFIKV 603 (614)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~tLE~vFl~~ 603 (614)
....... .... .+....... ..+...+..+.......++.+.+. ..+..+.++...+++|||+|.++
T Consensus 233 ~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~sLe~~~~~~ 300 (301)
T TIGR03522 233 EEQIDLQ---LFET-LEEISSVKNTGGNTWKLTFETPNDTRPEIFKLAQ--QKGLKLISLQQNEKNLEQVFREI 300 (301)
T ss_pred cCcchhH---HHhh-ccccceeeecCCCeEEEEEcCccchHHHHHHHHH--HCCCceEEEEeCCCCHHHHHHHh
Confidence 2211111 1111 112111111 122222332322233455655543 34678999999999999999876
No 12
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=9.3e-55 Score=460.29 Aligned_cols=298 Identities=36% Similarity=0.544 Sum_probs=238.6
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHh
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 368 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~ 368 (614)
..+|+++||+|+|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.......
T Consensus 39 ~~~i~i~nl~k~y~~------~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~ 112 (340)
T PRK13536 39 TVAIDLAGVSKSYGD------KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLA 112 (340)
T ss_pred ceeEEEEEEEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHH
Confidence 347999999999973 57999999999999999999999999999999999999999999999999987655667
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCC
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 448 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~ 448 (614)
++.+||+||++.+++.+|++||+.+++.+++....+.+++++++++.++|. +..++++++||||||||++||+||+++
T Consensus 113 ~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~--~~~~~~~~~LS~G~kqrv~lA~aL~~~ 190 (340)
T PRK13536 113 RARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE--SKADARVSDLSGGMKRRLTLARALIND 190 (340)
T ss_pred hccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hhhCCChhhCCHHHHHHHHHHHHHhcC
Confidence 889999999999999999999999888777655555667788999999997 478999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHhcCCcEEEE
Q 007178 449 PKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFT 527 (614)
Q Consensus 449 p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~~~~~l~ 527 (614)
|+++||||||+||||.+++++|++|++++ +|+|||++||++++++.+||||++|++|++++.|+++++++.......+.
T Consensus 191 P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~~~~~~~~~ 270 (340)
T PRK13536 191 PQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDEHIGCQVIE 270 (340)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhhccCceEEE
Confidence 99999999999999999999999999864 69999999999999999999999999999999999999988765444443
Q ss_pred EEeCCCcHHHHHHHHHhcCCCceeEEEeccEEEEEecCCCCCHHHHHHHHHHHhcCCceeEEEeccCCHHHHHHHhhccc
Q 007178 528 MTTSADHEEEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTVFAWGLADTTLEDVFIKVARHA 607 (614)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~tLE~vFl~~~~~~ 607 (614)
+... ..+....... +........+.. +.+... ...++.+.+.. ..+ .++.+..+||||+|++++++.
T Consensus 271 ~~~~--~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~--~~~~~~~~l~~---~~~-~~~~~~~~sLEdvf~~~~~~~ 337 (340)
T PRK13536 271 IYGG--DPHELSSLVK---PYARRIEVSGET--LFCYAP--DPEQVRVQLRG---RAG-LRLLQRPPNLEDVFLRLTGRE 337 (340)
T ss_pred EEcC--ChHHHHHHhh---cccceEEecCCE--EEEEeC--CHHHHHHHHHh---ccC-ceEEEcCCCHHHHHHHHhccc
Confidence 3321 1111222211 111111111222 222111 12344444421 112 256788999999999998754
No 13
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=7e-55 Score=455.70 Aligned_cols=290 Identities=38% Similarity=0.612 Sum_probs=234.2
Q ss_pred cceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHH
Q 007178 310 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 389 (614)
Q Consensus 310 ~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e 389 (614)
+.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.......++.+||+||++.+++.+|++|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 85 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRE 85 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHH
Confidence 57999999999999999999999999999999999999999999999999987655566788999999999999999999
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHH
Q 007178 390 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 469 (614)
Q Consensus 390 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i 469 (614)
|+.+.++.++.+.++.+++++++++.+||. +..++++++||||||||++||+||+++|+++||||||+||||.+++.+
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l 163 (302)
T TIGR01188 86 NLEMMGRLYGLPKDEAEERAEELLELFELG--EAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAI 163 (302)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCh--hHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH
Confidence 999988777766566677899999999997 378999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHhcCCcEEEEEEeCCCcH-HHHHHHH----H
Q 007178 470 WNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTMTTSADHE-EEVESMA----K 543 (614)
Q Consensus 470 ~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~~~~~l~~~~~~~~~-~~~~~~~----~ 543 (614)
++.|++++ +|+|||++||++++++.+|||+++|++|++++.|++++++++++..+ +.+....... ....... .
T Consensus 164 ~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 242 (302)
T TIGR01188 164 WDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGKDT-LESRPRDIQSLKVEVSMLIAELG 242 (302)
T ss_pred HHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHhcCCce-EEEEecCchhhhhhhhHHHhhhh
Confidence 99999864 68999999999999999999999999999999999999988875442 3333221111 1001111 0
Q ss_pred hcCCCceeEEEeccEEEEEecCCCCCHHHHHHHHHHHhcCCceeEEEeccCCHHHHHHHhh
Q 007178 544 RLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTVFAWGLADTTLEDVFIKVA 604 (614)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~tLE~vFl~~~ 604 (614)
...++........+...+.++.......++++.+. ..+..+.++++.++||||+|++++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~i~~~~~~~~~Le~~f~~~~ 301 (302)
T TIGR01188 243 ETGLGLLAVTVDSDRIKILVPDGDETVPEIVEAAI--RNGIRIRSISTERPSLDDVFLKLT 301 (302)
T ss_pred hccccceeeeecCCeEEEEEcCchhHHHHHHHHHH--HCCCceEEEEcCCCCHHHHHHHHh
Confidence 11122221121223334444433233556666654 356789999999999999999875
No 14
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=3.3e-53 Score=443.29 Aligned_cols=297 Identities=34% Similarity=0.525 Sum_probs=236.3
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 369 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~ 369 (614)
.+++++|++|+|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.......+
T Consensus 3 ~~i~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 76 (303)
T TIGR01288 3 VAIDLVGVSKSYGD------KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLAR 76 (303)
T ss_pred cEEEEEeEEEEeCC------eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHh
Confidence 46999999999973 569999999999999999999999999999999999999999999999999865445567
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCC
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 449 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p 449 (614)
+.+||+||++.+++.+|++||+.+++..++.+.++.+++++++++.++|. +..++++++||||||||++||+||+++|
T Consensus 77 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~--~~~~~~~~~LSgG~~qrv~la~al~~~p 154 (303)
T TIGR01288 77 VAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE--SKADVRVALLSGGMKRRLTLARALINDP 154 (303)
T ss_pred hcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh--hHhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 88999999999999999999999877665555455566788999999996 3789999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHhcCCcEEEEE
Q 007178 450 KVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTM 528 (614)
Q Consensus 450 ~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~~~~~l~~ 528 (614)
+++||||||+||||.+++.+++.|+++ ++|+|||++||++++++.+|||+++|++|++++.|+++++.+.....+...+
T Consensus 155 ~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 234 (303)
T TIGR01288 155 QLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDEQIGCNVIEI 234 (303)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhhcCCCeEEEE
Confidence 999999999999999999999999986 4699999999999999999999999999999999999999877554444444
Q ss_pred EeCCCcHHHHHHHHHhcCCCceeEEEeccEEEEEecCCCCCHHHHHHHHHHHhcCCceeEEEeccCCHHHHHHHhhccc
Q 007178 529 TTSADHEEEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTVFAWGLADTTLEDVFIKVARHA 607 (614)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~tLE~vFl~~~~~~ 607 (614)
.... .+....... +........+.. +.+... ...++...+.. ....++....+||||+|++++++.
T Consensus 235 ~~~~--~~~~~~~~~---~~~~~~~~~~~~--~~~~~~--~~~~~~~~l~~----~~~~~~~~~~~sLedif~~~~~~~ 300 (303)
T TIGR01288 235 YGGD--PDELRELIR---PYARRIEVSGET--LFCYAR--DPEQVRVQLRG----RTDLRLLQRPPNLEDVFLRLTGRE 300 (303)
T ss_pred EcCC--HHHHHHHhh---hccceeeeeCCE--EEEEeC--CHHHHHHHHhc----ccCceEEecCCCHHHHHHHHhccc
Confidence 3221 122222211 111111111222 222111 22344444431 123367788999999999998654
No 15
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.5e-54 Score=421.18 Aligned_cols=224 Identities=29% Similarity=0.538 Sum_probs=207.6
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC----c
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT----D 364 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~----~ 364 (614)
.+.|++++|+|+||+ +.+++|+||+|++||+++++||+|+|||||+|+|.|+++|++|+|.++|+++.. .
T Consensus 6 ~~~I~vr~v~~~fG~------~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~ 79 (263)
T COG1127 6 EPLIEVRGVTKSFGD------RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEE 79 (263)
T ss_pred cceEEEeeeeeecCC------EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHH
Confidence 457999999999984 789999999999999999999999999999999999999999999999999854 3
Q ss_pred HHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhh-cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 007178 365 MDRIYTSMGVCPQEDLLWETLTGREHLLFYGRL-KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 443 (614)
Q Consensus 365 ~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~ 443 (614)
..++|+++|++||+.+||..|||+||+.|+.+- ..++++..++.+..-|+.+||.. ...++.+++|||||+||+++||
T Consensus 80 ~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~-~~~~~~PsELSGGM~KRvaLAR 158 (263)
T COG1127 80 LYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRG-AAADLYPSELSGGMRKRVALAR 158 (263)
T ss_pred HHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCCh-hhhhhCchhhcchHHHHHHHHH
Confidence 346789999999999999999999999998764 35677888888999999999984 4489999999999999999999
Q ss_pred HHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 444 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ--GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 444 al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~--g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
|++.||+++++||||+||||.+...+-++|+++++ |.|++++|||++++..+|||++++.+|+++..|+++++.+.
T Consensus 159 AialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~s 236 (263)
T COG1127 159 AIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLAS 236 (263)
T ss_pred HHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999999999753 99999999999999999999999999999999999999763
No 16
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-53 Score=442.08 Aligned_cols=225 Identities=28% Similarity=0.467 Sum_probs=210.7
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhc
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 370 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~ 370 (614)
.|+++|++|.||+ ..+|+|+||+|++||+++|+||||||||||||+|+||++||+|+|.++|++++.-.. .+|
T Consensus 3 ~i~l~~v~K~yg~------~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P-~~R 75 (338)
T COG3839 3 ELELKNVRKSFGS------FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPP-EKR 75 (338)
T ss_pred EEEEeeeEEEcCC------ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-hHC
Confidence 6899999999984 229999999999999999999999999999999999999999999999999976333 347
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCC
Q 007178 371 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 450 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~ 450 (614)
+||+|||+.+|||+|||+||+.|+.++++.++++.+++++++++.++|++ +.|+++.+|||||||||++||||+.+|+
T Consensus 76 ~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~--lL~r~P~~LSGGQrQRVAlaRAlVr~P~ 153 (338)
T COG3839 76 GIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEH--LLNRKPLQLSGGQRQRVALARALVRKPK 153 (338)
T ss_pred CEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChh--HHhcCcccCChhhHHHHHHHHHHhcCCC
Confidence 89999999999999999999999999999999999999999999999974 9999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHhcCCcE
Q 007178 451 VVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSY 524 (614)
Q Consensus 451 vllLDEPtsgLD~~~~~~i~~~l~~~~-~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~~~~ 524 (614)
+++||||.|+||+..|..+...|+++. + |.|+|.+|||-.||..++|||++|++|++...|+|.++.++....+
T Consensus 154 v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n~f 229 (338)
T COG3839 154 VFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPANLF 229 (338)
T ss_pred EEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccchh
Confidence 999999999999999999999999864 3 8999999999999999999999999999999999999987765443
No 17
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-53 Score=444.74 Aligned_cols=222 Identities=32% Similarity=0.531 Sum_probs=206.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 369 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~ 369 (614)
..++++|++|.|++ ..||+|+||+|++||+++|+||||||||||||||+|+..|++|+|.++|+++..-+ ..+
T Consensus 4 ~~l~i~~v~k~yg~------~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lp-p~k 76 (352)
T COG3842 4 PALEIRNVSKSFGD------FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVP-PEK 76 (352)
T ss_pred ceEEEEeeeeecCC------eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC-hhh
Confidence 47999999999983 68999999999999999999999999999999999999999999999999997643 346
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcC-CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCC
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGRLKN-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 448 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~ 448 (614)
|.||+|||+.+|||+|||+||+.|+.++++ .++++.+++++++++.++|. ++.++++++|||||||||++||||+.+
T Consensus 77 R~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~--~~~~R~p~qLSGGQqQRVALARAL~~~ 154 (352)
T COG3842 77 RPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLE--GFADRKPHQLSGGQQQRVALARALVPE 154 (352)
T ss_pred cccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCch--hhhhhChhhhChHHHHHHHHHHHhhcC
Confidence 889999999999999999999999988655 34466889999999999997 499999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHhc
Q 007178 449 PKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 520 (614)
Q Consensus 449 p~vllLDEPtsgLD~~~~~~i~~~l~~~-~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 520 (614)
|++||||||.|+||..-|+++...++++ + .|.|.|++|||-+|+..++|||++|++|+|...|+|+++..+.
T Consensus 155 P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 155 PKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred cchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 9999999999999999999999999985 3 4999999999999999999999999999999999999996554
No 18
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3e-54 Score=407.04 Aligned_cols=221 Identities=32% Similarity=0.567 Sum_probs=204.4
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc--HHHh
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDRI 368 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~--~~~~ 368 (614)
.+.++||.|+|++ +++++++||+|++||++||+|||||||||++.|++|+.+|++|+|.++|.|++.. ..+.
T Consensus 4 ~L~a~~l~K~y~k------r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RA 77 (243)
T COG1137 4 TLVAENLAKSYKK------RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRA 77 (243)
T ss_pred EEEehhhhHhhCC------eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHh
Confidence 5889999999984 6799999999999999999999999999999999999999999999999999763 3567
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCch--hHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHh
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGP--ALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 446 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~--~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~ 446 (614)
|..|||+||++.+|..|||+||+.....++..+.+ +.+.+++++|+.+++.+ .++++..+||||||||+.|||||+
T Consensus 78 rlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~h--lr~~~a~sLSGGERRR~EIARaLa 155 (243)
T COG1137 78 RLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITH--LRDSKAYSLSGGERRRVEIARALA 155 (243)
T ss_pred hcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHH--HhcCcccccccchHHHHHHHHHHh
Confidence 78999999999999999999999988877654433 44556889999999984 899999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 447 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 447 ~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
.+|+.++||||++|+||.+..++.++++.++ +|..|++|-|+..|...+|||.+|+++|++.+.|+++++.+.
T Consensus 156 ~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 156 ANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred cCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 9999999999999999999999999999985 699999999999999999999999999999999999998654
No 19
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.6e-53 Score=413.96 Aligned_cols=203 Identities=28% Similarity=0.474 Sum_probs=190.4
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhc
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 370 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~ 370 (614)
.+.+++++|.|++ ..||+|+||+|++||+++|+||+|||||||+|+|+|+.+|++|+|.++|.++... ..
T Consensus 3 ~l~i~~v~~~f~~------~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p----~~ 72 (248)
T COG1116 3 LLEIEGVSKSFGG------VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP----GP 72 (248)
T ss_pred eEEEEeeEEEeCc------eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC----CC
Confidence 5899999999984 6799999999999999999999999999999999999999999999999987322 35
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCC
Q 007178 371 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 450 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~ 450 (614)
.+||+||++.|+|.+||+||+.+.....+.++++.+++++++|+.+||. ++.++++++||||||||++|||||+.+|+
T Consensus 73 ~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~--~~~~~~P~qLSGGMrQRVaiARAL~~~P~ 150 (248)
T COG1116 73 DIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLA--GFEDKYPHQLSGGMRQRVAIARALATRPK 150 (248)
T ss_pred CEEEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCc--chhhcCccccChHHHHHHHHHHHHhcCCC
Confidence 6899999999999999999999999988877788888999999999997 48999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh--cCCceEEEEcCCHHHHHhhCCEEEEEeCC
Q 007178 451 VVYMDEPSTGLDPASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVDG 505 (614)
Q Consensus 451 vllLDEPtsgLD~~~~~~i~~~l~~~--~~g~tIil~TH~~~e~~~l~dri~il~~G 505 (614)
+|+||||+++||...|..+.+.+.++ +.++||+++|||++||-.++|||++|.++
T Consensus 151 lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 151 LLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred EEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 99999999999999999999999885 45899999999999999999999999994
No 20
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.3e-52 Score=403.75 Aligned_cols=222 Identities=28% Similarity=0.468 Sum_probs=203.3
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC----cH
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT----DM 365 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~----~~ 365 (614)
.+|+++||+|+|++ ++++|+||||+|++||+++|+||+|||||||||+|.|+.+|++|+|.++|.++.. ..
T Consensus 2 ~~i~~~nl~k~yp~-----~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~l 76 (258)
T COG3638 2 MMIEVKNLSKTYPG-----GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKEL 76 (258)
T ss_pred ceEEEeeeeeecCC-----CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHH
Confidence 47999999999964 4789999999999999999999999999999999999999999999999998854 35
Q ss_pred HHhhcceEEEcCCCCCCCCCCHHHHHHHHhh--------hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHH
Q 007178 366 DRIYTSMGVCPQEDLLWETLTGREHLLFYGR--------LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKR 437 (614)
Q Consensus 366 ~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~--------~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kq 437 (614)
+++|+++||++|++.|.+++||.+|+..+.. +-|+..++.+..+-++|+.+|+. +++.+++++|||||||
T Consensus 77 r~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~--~~A~qra~~LSGGQQQ 154 (258)
T COG3638 77 RKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGIL--DKAYQRASTLSGGQQQ 154 (258)
T ss_pred HHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcH--HHHHHHhccCCcchhH
Confidence 6678999999999999999999999987532 23555677788889999999997 4899999999999999
Q ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHH
Q 007178 438 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 515 (614)
Q Consensus 438 rl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~--~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~ 515 (614)
||+|||||+++|+++|.|||+++|||.+.+++++.|+++ ++|.|||++.|+++.|.++||||+-|++|+++.+|++++
T Consensus 155 RVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~e 234 (258)
T COG3638 155 RVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASE 234 (258)
T ss_pred HHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhh
Confidence 999999999999999999999999999999999999985 469999999999999999999999999999999999988
Q ss_pred HHH
Q 007178 516 LKA 518 (614)
Q Consensus 516 l~~ 518 (614)
+.+
T Consensus 235 l~~ 237 (258)
T COG3638 235 LTD 237 (258)
T ss_pred hhH
Confidence 654
No 21
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=1.3e-51 Score=435.80 Aligned_cols=224 Identities=30% Similarity=0.461 Sum_probs=203.0
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc----HH
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MD 366 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~----~~ 366 (614)
+|+++|++|+|++.. ..+.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ..
T Consensus 1 mI~~~~lsk~y~~~~--~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~ 78 (343)
T TIGR02314 1 MIKLSNITKVFHQGT--KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELT 78 (343)
T ss_pred CEEEEEEEEEECCCC--cceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHH
Confidence 488999999996321 125799999999999999999999999999999999999999999999999998642 23
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHh
Q 007178 367 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 446 (614)
Q Consensus 367 ~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~ 446 (614)
..|++|||+||++.+++.+||+||+.++....+.++++.++++.++++.+||. ++.++++.+||||||||++|||||+
T Consensus 79 ~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~--~~~~~~~~~LSgGqkQRV~IARAL~ 156 (343)
T TIGR02314 79 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLG--DKHDSYPSNLSGGQKQRVAIARALA 156 (343)
T ss_pred HHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hhhhCChhhCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999999987766666667778899999999997 4789999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 447 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 447 ~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
.+|++|||||||+||||.+++.++++|+++. + |.|||++||+++++.++|||+++|++|++++.|+++++..
T Consensus 157 ~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 157 SNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 9999999999999999999999999999863 3 8999999999999999999999999999999999988754
No 22
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=5.6e-52 Score=415.74 Aligned_cols=219 Identities=27% Similarity=0.445 Sum_probs=198.3
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhh
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 369 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~ 369 (614)
+++++||++.|++ +.+++|+||++++||+++|+||||||||||+|+|+|+++|.+|+|.++|+++.+ ..+++.
T Consensus 2 ~L~~~~ls~~y~~------~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelA 75 (258)
T COG1120 2 MLEVENLSFGYGG------KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELA 75 (258)
T ss_pred eeEEEEEEEEECC------eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHh
Confidence 5899999999984 689999999999999999999999999999999999999999999999999975 556677
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhh----cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGRL----KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 445 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~----~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al 445 (614)
+.+||+||.+.....+||+|-+.++..- .+...++.++.++++|+.+|+. +++++.+.+||||||||+.|||||
T Consensus 76 k~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~--~la~r~~~~LSGGerQrv~iArAL 153 (258)
T COG1120 76 KKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLE--HLADRPVDELSGGERQRVLIARAL 153 (258)
T ss_pred hhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcH--HHhcCcccccChhHHHHHHHHHHH
Confidence 8999999998888889999988775321 1222445566899999999997 499999999999999999999999
Q ss_pred hCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHH
Q 007178 446 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 517 (614)
Q Consensus 446 ~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~--~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 517 (614)
+++|++++|||||+.||...+-+++++++++. +|+|||+++||++.|.++|||+++|++|++++.|+|+++.
T Consensus 154 aQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 154 AQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred hcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999963 5999999999999999999999999999999999998753
No 23
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.4e-52 Score=416.61 Aligned_cols=229 Identities=28% Similarity=0.486 Sum_probs=207.1
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCe---eCCCcHHH
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGL---DIRTDMDR 367 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~---~i~~~~~~ 367 (614)
+|+++|++|.|+. ..|++|+|++|+.||.+||+||||||||||||+|+||+.|++|+|.++|+ |..+ ...
T Consensus 2 ~i~i~~~~~~~~~------~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~-~~~ 74 (345)
T COG1118 2 SIRINNVKKRFGA------FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSN-LAV 74 (345)
T ss_pred ceeehhhhhhccc------ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhc-cch
Confidence 5889999999984 67999999999999999999999999999999999999999999999999 6544 222
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcC--CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 007178 368 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKN--LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 445 (614)
Q Consensus 368 ~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~--~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al 445 (614)
..++|||++|+..||++|||.||+.|+.+.+. .++.+.+.+++++|+.++|+ ...++++.+||||||||+++||||
T Consensus 75 ~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~--~la~ryP~QLSGGQrQRVALARAL 152 (345)
T COG1118 75 RDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLE--GLADRYPAQLSGGQRQRVALARAL 152 (345)
T ss_pred hhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhccc--chhhcCchhcChHHHHHHHHHHHh
Confidence 34689999999999999999999999987653 23467788999999999997 499999999999999999999999
Q ss_pred hCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHhcCCc
Q 007178 446 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGS 523 (614)
Q Consensus 446 ~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~~~ 523 (614)
+.+|++|+||||+++||...|+++..-|++. .+ |.|.+++|||.+|+.++||||++|++|+|...|+++++..+....
T Consensus 153 A~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~P~s~ 232 (345)
T COG1118 153 AVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASR 232 (345)
T ss_pred hcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcCCCcc
Confidence 9999999999999999999999999999985 44 999999999999999999999999999999999999998877665
Q ss_pred EEEEE
Q 007178 524 YVFTM 528 (614)
Q Consensus 524 ~~l~~ 528 (614)
+....
T Consensus 233 fV~~f 237 (345)
T COG1118 233 FVARF 237 (345)
T ss_pred ceecc
Confidence 54443
No 24
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=6.8e-52 Score=388.45 Aligned_cols=215 Identities=28% Similarity=0.443 Sum_probs=203.2
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC----cHH
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT----DMD 366 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~----~~~ 366 (614)
+|+++|++|+|++ .+.||+|+||+|++||++-|+||+||||||++|+|.+..+||+|+|.++|+|+.+ +..
T Consensus 1 mI~f~~V~k~Y~~-----g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP 75 (223)
T COG2884 1 MIRFENVSKAYPG-----GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIP 75 (223)
T ss_pred CeeehhhhhhcCC-----CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccc
Confidence 5889999999986 3679999999999999999999999999999999999999999999999999864 445
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHh
Q 007178 367 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 446 (614)
Q Consensus 367 ~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~ 446 (614)
-+|++||+||||..|.+++||+||+.|..+..|.+++++++++.++|+.+||.+ .++..+.+||||||||++||||++
T Consensus 76 ~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~--k~~~lP~~LSGGEQQRvaIARAiV 153 (223)
T COG2884 76 FLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKH--KARALPSQLSGGEQQRVAIARAIV 153 (223)
T ss_pred hhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccch--hhhcCccccCchHHHHHHHHHHHc
Confidence 679999999999999999999999999999999999999999999999999974 889999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcC
Q 007178 447 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 512 (614)
Q Consensus 447 ~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~ 512 (614)
.+|++||.||||.+|||....++++++.++. .|.||+++|||.+.+..+-.|++.+++|+++.+..
T Consensus 154 ~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 154 NQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred cCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 9999999999999999999999999999975 69999999999999999999999999999987653
No 25
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=5.9e-51 Score=400.91 Aligned_cols=214 Identities=28% Similarity=0.461 Sum_probs=190.4
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc----HH
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MD 366 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~----~~ 366 (614)
+++++||+|.|+.... ...||+++||+|++||+++|+||+||||||||++|.|+.+||+|+|.++|+|+... ..
T Consensus 1 ~i~~~~v~k~y~~~~~--~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~ 78 (226)
T COG1136 1 MIELKNVSKIYGLGGE--KVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELA 78 (226)
T ss_pred CcEEeeeEEEeccCCc--ceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHH
Confidence 3678999999975321 36799999999999999999999999999999999999999999999999998642 22
Q ss_pred Hh-hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 007178 367 RI-YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 445 (614)
Q Consensus 367 ~~-~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al 445 (614)
.. +++|||+||+..|.|++||+||+.++..+.+.+..+.+++++++++.+||.+ ...++++.+|||||||||+|||||
T Consensus 79 ~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~-~~~~~~p~eLSGGqqQRVAIARAL 157 (226)
T COG1136 79 KLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLED-RLLKKKPSELSGGQQQRVAIARAL 157 (226)
T ss_pred HHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChh-hhccCCchhcCHHHHHHHHHHHHH
Confidence 23 4679999999999999999999999988887765566788999999999974 344489999999999999999999
Q ss_pred hCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEE
Q 007178 446 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQ 508 (614)
Q Consensus 446 ~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~ 508 (614)
+.+|++|+.||||.+||+.+.++++++++++ + .|+|||++|||.+.+. .|||++.|++|++.
T Consensus 158 ~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~dG~~~ 221 (226)
T COG1136 158 INNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIELKDGKIE 221 (226)
T ss_pred hcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEeCCeee
Confidence 9999999999999999999999999999986 3 4999999999998876 79999999999943
No 26
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-51 Score=432.67 Aligned_cols=222 Identities=26% Similarity=0.446 Sum_probs=204.8
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 369 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~ 369 (614)
++|+++|++|.|++ +.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.... ..+
T Consensus 5 ~~l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~-~~~ 77 (351)
T PRK11432 5 NFVVLKNITKRFGS------NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRS-IQQ 77 (351)
T ss_pred cEEEEEeEEEEECC------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCC-HHH
Confidence 47999999999973 56999999999999999999999999999999999999999999999999986533 335
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCC
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 449 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p 449 (614)
+++||+||++.+|+++||+||+.|..+.++.++++.+++++++++.++|. ++.++++.+||||||||++|||||+.+|
T Consensus 78 r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~--~~~~r~~~~LSgGq~QRVaLARaL~~~P 155 (351)
T PRK11432 78 RDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLA--GFEDRYVDQISGGQQQRVALARALILKP 155 (351)
T ss_pred CCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 78999999999999999999999987776766677788999999999997 4889999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHhc
Q 007178 450 KVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 520 (614)
Q Consensus 450 ~vllLDEPtsgLD~~~~~~i~~~l~~~~-~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 520 (614)
+++||||||+|||+..|+++++.|+++. + |+|+|++|||++|+..+||||++|++|+++..|+++++.++.
T Consensus 156 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p 228 (351)
T PRK11432 156 KVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQP 228 (351)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 9999999999999999999999999863 3 899999999999999999999999999999999999986543
No 27
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=7.1e-51 Score=432.79 Aligned_cols=221 Identities=30% Similarity=0.503 Sum_probs=204.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 369 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~ 369 (614)
.+++++|++|+|++ +.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..... .+
T Consensus 3 ~~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~-~~ 75 (353)
T TIGR03265 3 PYLSIDNIRKRFGA------FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPP-QK 75 (353)
T ss_pred cEEEEEEEEEEeCC------eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH-HH
Confidence 36999999999973 569999999999999999999999999999999999999999999999999865332 35
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCC
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 449 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p 449 (614)
+.+||+||++.+||.+||+||+.|..+.++.++++.+++++++++.++|. ++.++++.+||||||||++|||||+.+|
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~--~~~~~~~~~LSgGq~QRvaLARaL~~~P 153 (353)
T TIGR03265 76 RDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLP--GSERKYPGQLSGGQQQRVALARALATSP 153 (353)
T ss_pred CCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC--chhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 78999999999999999999999987766666677788999999999997 4899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 450 KVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 450 ~vllLDEPtsgLD~~~~~~i~~~l~~~-~~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
+++|||||++|||+..|+++++.|+++ ++ |.|+|++|||++|+..+|||+++|++|++++.|+++++.++
T Consensus 154 ~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~ 225 (353)
T TIGR03265 154 GLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH 225 (353)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999986 43 89999999999999999999999999999999999998754
No 28
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.1e-51 Score=433.27 Aligned_cols=221 Identities=24% Similarity=0.460 Sum_probs=202.5
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhc
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 370 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~ 370 (614)
+++++|++|+|++ ++.+|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++..... .++
T Consensus 3 ~l~i~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~-~~r 76 (356)
T PRK11650 3 GLKLQAVRKSYDG-----KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEP-ADR 76 (356)
T ss_pred EEEEEeEEEEeCC-----CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH-HHC
Confidence 5899999999932 2579999999999999999999999999999999999999999999999999865322 347
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCC
Q 007178 371 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 450 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~ 450 (614)
+|||+||++.+|+++||+||+.+..+.++.++++.+++++++++.+||. ++.++++++|||||||||+|||||+.+|+
T Consensus 77 ~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LSgGq~QRvalARAL~~~P~ 154 (356)
T PRK11650 77 DIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELE--PLLDRKPRELSGGQRQRVAMGRAIVREPA 154 (356)
T ss_pred CEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCCh--hHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 8999999999999999999999987766666666778899999999997 48999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 451 VVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 451 vllLDEPtsgLD~~~~~~i~~~l~~~-~~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
++||||||+|||+.+++.+++.|+++ ++ |.|+|++|||++|+..+|||+++|++|+++..|+++++.++
T Consensus 155 llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~ 225 (356)
T PRK11650 155 VFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK 225 (356)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence 99999999999999999999999986 33 89999999999999999999999999999999999998654
No 29
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-51 Score=403.16 Aligned_cols=222 Identities=31% Similarity=0.463 Sum_probs=202.2
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc--HHH
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDR 367 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~--~~~ 367 (614)
+.++++||+|+||+ ..|++|+||++++||++||+|||||||||++|+|+|.++||+|+|.++|+|+... .+.
T Consensus 3 ~lL~v~~l~k~FGG------l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~i 76 (250)
T COG0411 3 PLLEVRGLSKRFGG------LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRI 76 (250)
T ss_pred ceeeeccceeecCC------EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHH
Confidence 46889999999985 6899999999999999999999999999999999999999999999999999753 344
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcC------------CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhH
Q 007178 368 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKN------------LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM 435 (614)
Q Consensus 368 ~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~------------~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~ 435 (614)
.|..|+--||...+|++|||.||+......+. ...++..+++.++|+.+||. +.+|+++++||+||
T Consensus 77 ar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~--~~a~~~A~~LsyG~ 154 (250)
T COG0411 77 ARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLG--ELADRPAGNLSYGQ 154 (250)
T ss_pred HhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCc--hhhcchhhcCChhH
Confidence 56778889999999999999999998644221 12456778899999999997 48999999999999
Q ss_pred HHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCH
Q 007178 436 KRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 513 (614)
Q Consensus 436 kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~--~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~ 513 (614)
||||.|||||+.+|++|+||||.+||.|....++.+.|++++ .|.||+++.|||+.+..+||||++|+.|+++++|+|
T Consensus 155 qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P 234 (250)
T COG0411 155 QRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTP 234 (250)
T ss_pred hHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCH
Confidence 999999999999999999999999999999999999999975 369999999999999999999999999999999999
Q ss_pred HHHHHh
Q 007178 514 KELKAR 519 (614)
Q Consensus 514 ~~l~~~ 519 (614)
+++.+.
T Consensus 235 ~eV~~d 240 (250)
T COG0411 235 EEVRNN 240 (250)
T ss_pred HHHhcC
Confidence 998764
No 30
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-51 Score=407.64 Aligned_cols=217 Identities=28% Similarity=0.498 Sum_probs=190.4
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 369 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~ 369 (614)
..|+++|+++.|++ ++||+|+||++++|++++|+||||||||||+|+|.|+++|++|+|.++|++...... +
T Consensus 3 ~~i~v~nl~v~y~~------~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~--~ 74 (254)
T COG1121 3 PMIEVENLTVSYGN------RPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK--R 74 (254)
T ss_pred cEEEEeeeEEEECC------EeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc--C
Confidence 46999999999974 269999999999999999999999999999999999999999999999988754322 4
Q ss_pred cceEEEcCCC---CCCCCCCHHHHHHHHhhhc----CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHH
Q 007178 370 TSMGVCPQED---LLWETLTGREHLLFYGRLK----NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 442 (614)
Q Consensus 370 ~~ig~~~Q~~---~l~~~lTv~e~l~~~~~~~----~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia 442 (614)
.+|||+||.. .-|| +||+|-+.++...+ +...++.+++++++|+.+|+. +++|+++++|||||+||+.||
T Consensus 75 ~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~--~~~~r~i~~LSGGQ~QRV~lA 151 (254)
T COG1121 75 LRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGME--DLRDRQIGELSGGQKQRVLLA 151 (254)
T ss_pred CeEEEcCcccccCCCCC-cCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCch--hhhCCcccccCcHHHHHHHHH
Confidence 6799999964 3355 69999998753221 122344578999999999997 499999999999999999999
Q ss_pred HHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 443 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 443 ~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
|||+.+|++++|||||+|+|+.++..+.++|++++ +|+||+++|||++.+.++||+|+.| |+++.|.|++++..+
T Consensus 152 RAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~~~ 227 (254)
T COG1121 152 RALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVLT 227 (254)
T ss_pred HHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhccC
Confidence 99999999999999999999999999999999975 5999999999999999999999887 568999999987643
No 31
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.1e-51 Score=398.95 Aligned_cols=226 Identities=27% Similarity=0.449 Sum_probs=203.4
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC--cHHH
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT--DMDR 367 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~--~~~~ 367 (614)
.+++++||++.|+++.. ..+||+||||+|.+||++||+|++|||||||.|+|+|+.+|++|+|.++|+++.. ..+.
T Consensus 2 ~~l~v~nl~~~y~~~~~--~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~ 79 (252)
T COG1124 2 TLLSVRNLSIVYGGGKF--AFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKA 79 (252)
T ss_pred ceEEEeceEEEecCCcc--hhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchh
Confidence 46999999999986421 2369999999999999999999999999999999999999999999999987643 2234
Q ss_pred hhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 007178 368 IYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 445 (614)
Q Consensus 368 ~~~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al 445 (614)
.++.+.++|||+ .|.|..||++.|.-..+..|.++. ++++.++++.+||.+ .++++++.+|||||+||++|||||
T Consensus 80 ~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~--~~~i~~~L~~VgL~~-~~l~R~P~eLSGGQ~QRiaIARAL 156 (252)
T COG1124 80 FYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKS--QQRIAELLDQVGLPP-SFLDRRPHELSGGQRQRIAIARAL 156 (252)
T ss_pred hccceeEEecCCccccCcchhHHHHHhhhhccCCccHH--HHHHHHHHHHcCCCH-HHHhcCchhcChhHHHHHHHHHHh
Confidence 568899999997 689999999999988877766543 455999999999986 799999999999999999999999
Q ss_pred hCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHhc
Q 007178 446 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ--GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 520 (614)
Q Consensus 446 ~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~--g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 520 (614)
+.+|++||||||||+||+..+.++|+++.++++ |.|+|++|||+..++.+||||++|++|++++.++.+++.+..
T Consensus 157 ~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~~ 233 (252)
T COG1124 157 IPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHP 233 (252)
T ss_pred ccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcCC
Confidence 999999999999999999999999999998753 779999999999999999999999999999999999998763
No 32
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=1.6e-50 Score=430.84 Aligned_cols=221 Identities=27% Similarity=0.446 Sum_probs=203.3
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCc--cEEEEcCeeCCCcHHHh
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS--GTAYVQGLDIRTDMDRI 368 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~s--G~i~i~G~~i~~~~~~~ 368 (614)
.++++|++|+|++ +.+|+|+||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|+++..... .
T Consensus 5 ~l~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~-~ 77 (362)
T TIGR03258 5 GIRIDHLRVAYGA------NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP-H 77 (362)
T ss_pred EEEEEEEEEEECC------eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH-H
Confidence 4899999999973 569999999999999999999999999999999999999999 999999999854322 3
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCC
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 448 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~ 448 (614)
++.+||+||++.+|+.+||+||+.|..+.++.++++.+++++++++.++|. ++.++++++|||||||||+|||||+.+
T Consensus 78 ~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~--~~~~~~~~~LSgGq~QRvaLARAL~~~ 155 (362)
T TIGR03258 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLG--DAAAHLPAQLSGGMQQRIAIARAIAIE 155 (362)
T ss_pred HCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC--chhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 578999999999999999999999987766666667778899999999997 489999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC--CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHhc
Q 007178 449 PKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ--GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 520 (614)
Q Consensus 449 p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~--g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 520 (614)
|+++||||||+|||+..|+++++.|+++ ++ |+|+|++|||++|+..+||||++|++|+++..|+++++.++.
T Consensus 156 P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p 230 (362)
T TIGR03258 156 PDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAP 230 (362)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9999999999999999999999999986 34 799999999999999999999999999999999999997653
No 33
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-51 Score=391.07 Aligned_cols=224 Identities=27% Similarity=0.436 Sum_probs=208.0
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCc-----cEEEEcCeeCCC
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS-----GTAYVQGLDIRT 363 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~s-----G~i~i~G~~i~~ 363 (614)
.+.++++||++.|+ ++.||+|||++|++++++||+||+||||||+||++..+....+ |+|.++|+++..
T Consensus 5 ~~~~~~~~l~~yYg------~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~ 78 (253)
T COG1117 5 IPAIEVRDLNLYYG------DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYD 78 (253)
T ss_pred cceeEecceeEEEC------chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccC
Confidence 34699999999998 4789999999999999999999999999999999999887765 999999999965
Q ss_pred ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 007178 364 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 438 (614)
Q Consensus 364 ---~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqr 438 (614)
+..++|+++|++||.|..|| +|++||+.++.+++|...++.++.+++.|+...|.+ ++..++.+..||||||||
T Consensus 79 ~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQR 157 (253)
T COG1117 79 PKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQR 157 (253)
T ss_pred CCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHH
Confidence 46788999999999999999 899999999999999887888899999999998874 235577888999999999
Q ss_pred HHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 439 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 439 l~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
|+|||||+-+|+|||||||||+|||.+..++-++|.++++.-||+++||+|..|.+++|+.+++.+|++++.|+++++..
T Consensus 158 LcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~ 237 (253)
T COG1117 158 LCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFT 237 (253)
T ss_pred HHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998866
Q ss_pred h
Q 007178 519 R 519 (614)
Q Consensus 519 ~ 519 (614)
+
T Consensus 238 ~ 238 (253)
T COG1117 238 N 238 (253)
T ss_pred C
Confidence 4
No 34
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-50 Score=405.94 Aligned_cols=222 Identities=32% Similarity=0.548 Sum_probs=206.8
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCC--CcHHH
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR--TDMDR 367 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~--~~~~~ 367 (614)
.+++++|++++|+++ +.+++|+|+++++||+++|+||||||||||+++++|+++|++|+|.++|.++. .....
T Consensus 2 ~~i~~~~l~~~y~~~-----~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~ 76 (235)
T COG1122 2 RMIEAENLSFRYPGR-----KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLE 76 (235)
T ss_pred ceEEEEEEEEEcCCC-----ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHH
Confidence 368999999999752 57999999999999999999999999999999999999999999999999986 45677
Q ss_pred hhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 007178 368 IYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 445 (614)
Q Consensus 368 ~~~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al 445 (614)
+|+++||++|++ .++.. ||+|.+.|+....|.+.++.+++++++++.+|+.+ ++++++.+|||||||||+||.+|
T Consensus 77 ~~~~vG~VfQnpd~q~~~~-tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~--~~~r~p~~LSGGqkqRvaIA~vL 153 (235)
T COG1122 77 LRQKVGLVFQNPDDQLFGP-TVEDEVAFGLENLGLPREEIEERVAEALELVGLEE--LLDRPPFNLSGGQKQRVAIAGVL 153 (235)
T ss_pred hhcceEEEEECcccccccC-cHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchh--hccCCccccCCcceeeHHhhHHH
Confidence 899999999997 55654 99999999999999998889999999999999974 89999999999999999999999
Q ss_pred hCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 446 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 446 ~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
+.+|++++||||||||||.+++++++.+++++ + |+|||++|||++++..+|||+++|++|+++.+|+++++.+.
T Consensus 154 a~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 154 AMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred HcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 99999999999999999999999999999974 4 68999999999999999999999999999999999888765
No 35
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-50 Score=406.85 Aligned_cols=219 Identities=32% Similarity=0.576 Sum_probs=196.3
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc----HHH
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MDR 367 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~----~~~ 367 (614)
++++|+++.|++ +.+++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... ...
T Consensus 1 l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~ 74 (235)
T cd03261 1 IELRGLTKSFGG------RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYR 74 (235)
T ss_pred CeEEEEEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHH
Confidence 468999999963 5699999999999999999999999999999999999999999999999987542 234
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHh
Q 007178 368 IYTSMGVCPQEDLLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 446 (614)
Q Consensus 368 ~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~ 446 (614)
.++.+||+||++.+++.+|++||+.+..... +.+.++.++++.++++.+++. +..++++++||||||||++|||||+
T Consensus 75 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~ia~al~ 152 (235)
T cd03261 75 LRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLR--GAEDLYPAELSGGMKKRVALARALA 152 (235)
T ss_pred HhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHHHHHHHh
Confidence 5778999999999999999999998865432 334445567788999999996 3779999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 447 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 447 ~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
.+|+++||||||+|||+.+++.+++.|+++ + +|+|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 153 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 153 LDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 999999999999999999999999999986 3 48999999999999999999999999999999999988754
No 36
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-50 Score=402.86 Aligned_cols=217 Identities=42% Similarity=0.697 Sum_probs=196.9
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcc
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 371 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ 371 (614)
|+++|++|.|++ +.+++|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++.......++.
T Consensus 1 i~~~~~~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (220)
T cd03265 1 IEVENLVKKYGD------FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRR 74 (220)
T ss_pred CEEEEEEEEECC------EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhc
Confidence 468999999973 56999999999999999999999999999999999999999999999999876444455678
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCE
Q 007178 372 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 451 (614)
Q Consensus 372 ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~v 451 (614)
+||+||++.+++.+|++||+.+....++...++.+++++++++.+++. +..++++.+||||||||++||+|++.+|++
T Consensus 75 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qr~~la~al~~~p~l 152 (220)
T cd03265 75 IGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLL--EAADRLVKTYSGGMRRRLEIARSLVHRPEV 152 (220)
T ss_pred EEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH--HHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999999876665554455667889999999996 378999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHH
Q 007178 452 VYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 516 (614)
Q Consensus 452 llLDEPtsgLD~~~~~~i~~~l~~~-~~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l 516 (614)
+||||||+|||+.+++.+++.|++. ++ |+|||++||+++++..+|||+++|++|+++..|+++++
T Consensus 153 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 153 LFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred EEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999985 44 89999999999999999999999999999999988764
No 37
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=7.2e-50 Score=427.42 Aligned_cols=223 Identities=28% Similarity=0.459 Sum_probs=203.8
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHh
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 368 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~ 368 (614)
.++++++|++|.|++ +.+++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..... .
T Consensus 12 ~~~L~l~~l~~~~~~------~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~-~ 84 (375)
T PRK09452 12 SPLVELRGISKSFDG------KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPA-E 84 (375)
T ss_pred CceEEEEEEEEEECC------eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH-H
Confidence 457999999999973 569999999999999999999999999999999999999999999999999864322 3
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCC
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 448 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~ 448 (614)
++.+||+||++.+||.+||+||+.|..+.++.+..+.+++++++++.++|. ++.++++.+||||||||++|||||+.+
T Consensus 85 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~p~~LSgGq~QRVaLARaL~~~ 162 (375)
T PRK09452 85 NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLE--EFAQRKPHQLSGGQQQRVAIARAVVNK 162 (375)
T ss_pred HCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc--hhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 578999999999999999999999987666666666677899999999997 489999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHhc
Q 007178 449 PKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 520 (614)
Q Consensus 449 p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 520 (614)
|+++||||||+|||+..|+.+++.|+++ ++ |+|+|++|||++|+..+||||++|++|+++..|+++++.++.
T Consensus 163 P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 163 PKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236 (375)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9999999999999999999999999986 33 899999999999999999999999999999999999987653
No 38
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=6.1e-50 Score=399.46 Aligned_cols=219 Identities=53% Similarity=0.872 Sum_probs=198.1
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcc
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 371 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ 371 (614)
|+++|++|.|++. ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.......++.
T Consensus 1 l~~~~l~~~~~~~----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (220)
T cd03263 1 LQIRNLTKTYKKG----TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQS 76 (220)
T ss_pred CEEEeeEEEeCCC----CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhh
Confidence 4689999999741 256999999999999999999999999999999999999999999999999886544556778
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCE
Q 007178 372 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 451 (614)
Q Consensus 372 ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~v 451 (614)
+||+||++.+++.+|++||+.+.....+.+.++.+++++++++.++|. +..++++.+||||||||++|||||+.+|++
T Consensus 77 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~~p~l 154 (220)
T cd03263 77 LGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLT--DKANKRARTLSGGMKRKLSLAIALIGGPSV 154 (220)
T ss_pred EEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH--HHHhChhhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999999877666554445567789999999996 377899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHH
Q 007178 452 VYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 516 (614)
Q Consensus 452 llLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l 516 (614)
+||||||+|||+.+++.+++.|++.++++|||++||+++++..+||++++|++|++++.|+++++
T Consensus 155 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 155 LLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999876679999999999999999999999999999999998775
No 39
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=7.4e-50 Score=424.99 Aligned_cols=220 Identities=27% Similarity=0.452 Sum_probs=200.0
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhc
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 370 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~ 370 (614)
+|+++|++|+|++ +.+++|+||++++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.... ..++
T Consensus 2 ~L~i~~l~~~~~~------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~-~~~r 74 (353)
T PRK10851 2 SIEIANIKKSFGR------TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLH-ARDR 74 (353)
T ss_pred EEEEEEEEEEeCC------eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC-HHHC
Confidence 5889999999973 56999999999999999999999999999999999999999999999999986432 2357
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhc----CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHh
Q 007178 371 SMGVCPQEDLLWETLTGREHLLFYGRLK----NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 446 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~----~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~ 446 (614)
++||+||++.+|+.+||+||+.+..... +.+.++.+++++++++.++|. ++.++++.+||||||||++|||||+
T Consensus 75 ~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~LSgGq~QRvalArAL~ 152 (353)
T PRK10851 75 KVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLA--HLADRYPAQLSGGQKQRVALARALA 152 (353)
T ss_pred CEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCc--hhhhCChhhCCHHHHHHHHHHHHHh
Confidence 8999999999999999999999876542 334455677899999999996 4889999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 447 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 447 ~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
.+|+++||||||+|||+.+++++++.|+++. + |+|+|++|||++++..+||||++|++|+++..|+++++.++
T Consensus 153 ~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~ 227 (353)
T PRK10851 153 VEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWRE 227 (353)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999863 4 89999999999999999999999999999999999998654
No 40
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.5e-50 Score=423.49 Aligned_cols=225 Identities=31% Similarity=0.492 Sum_probs=202.1
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc----HH
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MD 366 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~----~~ 366 (614)
+|+++|++|+|++.. .++.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ..
T Consensus 1 mi~i~~l~~~y~~~~--~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~ 78 (343)
T PRK11153 1 MIELKNISKVFPQGG--RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELR 78 (343)
T ss_pred CEEEEeEEEEeCCCC--CceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHH
Confidence 478999999997311 135799999999999999999999999999999999999999999999999998642 12
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHh
Q 007178 367 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 446 (614)
Q Consensus 367 ~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~ 446 (614)
..++++||+||++.+++.+|++||+.+.....+.+.++.+++++++++.+||. +..++++.+||||||||++|||||+
T Consensus 79 ~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LSgGq~qRv~lAraL~ 156 (343)
T PRK11153 79 KARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLS--DKADRYPAQLSGGQKQRVAIARALA 156 (343)
T ss_pred HHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hhhhCChhhCCHHHHHHHHHHHHHH
Confidence 34678999999999999999999999887666665556677899999999996 4789999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 447 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 447 ~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
.+|+++||||||+|||+.+++.++++|+++ ++ |+|||++||+++++..+|||+++|++|++++.|+++++...
T Consensus 157 ~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~ 231 (343)
T PRK11153 157 SNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSH 231 (343)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999986 33 89999999999999999999999999999999999988654
No 41
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-50 Score=405.57 Aligned_cols=234 Identities=28% Similarity=0.426 Sum_probs=213.6
Q ss_pred CeEEEEeEEEEcCCCCC------------------CCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCc
Q 007178 290 HAIISDNLRKIYPGRDG------------------NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 351 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~------------------~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~s 351 (614)
..|+++|++|.||++.. .+-...++|+||+|++|||+.|+|-+|||||||+|+|.+|++||+
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~ 82 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTR 82 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCC
Confidence 35899999999986411 123567899999999999999999999999999999999999999
Q ss_pred cEEEEcCeeCCC-cH---HHh-hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccc
Q 007178 352 GTAYVQGLDIRT-DM---DRI-YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADK 426 (614)
Q Consensus 352 G~i~i~G~~i~~-~~---~~~-~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~ 426 (614)
|+|.++|.|+.+ +. .+. |++++++||+..|+|+.||.||..|+..++|.++++.++++.++++.+||. ++.++
T Consensus 83 G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~--~~~~~ 160 (386)
T COG4175 83 GEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLE--GYADK 160 (386)
T ss_pred ceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCch--hhhhc
Confidence 999999999864 22 223 467999999999999999999999999999999999999999999999997 59999
Q ss_pred cCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHhhCCEEEEEeC
Q 007178 427 QAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVD 504 (614)
Q Consensus 427 ~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~--~g~tIil~TH~~~e~~~l~dri~il~~ 504 (614)
++++|||||||||.+||||+.+|++||+|||+|+|||--|.++.+.|.+++ -++||+++|||+|||.++.|||+||++
T Consensus 161 yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkd 240 (386)
T COG4175 161 YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKD 240 (386)
T ss_pred CcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecC
Confidence 999999999999999999999999999999999999999999999998864 389999999999999999999999999
Q ss_pred CEEEEEcCHHHHHHhcCCcEE
Q 007178 505 GSLQCIGNPKELKARYGGSYV 525 (614)
Q Consensus 505 G~l~~~g~~~~l~~~~~~~~~ 525 (614)
|+++..|+|+++..+..+.|.
T Consensus 241 G~ivQ~Gtp~eIl~~PAndYV 261 (386)
T COG4175 241 GEIVQVGTPEEILLNPANDYV 261 (386)
T ss_pred CeEEEeCCHHHHHcCccHHHH
Confidence 999999999999888777764
No 42
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-49 Score=425.63 Aligned_cols=223 Identities=28% Similarity=0.452 Sum_probs=204.1
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHh
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 368 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~ 368 (614)
..+++++|++|+|++ +.+++|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.... ..
T Consensus 17 ~~~l~l~~v~~~~~~------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~-~~ 89 (377)
T PRK11607 17 TPLLEIRNLTKSFDG------QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVP-PY 89 (377)
T ss_pred CceEEEEeEEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC-HH
Confidence 447999999999973 56999999999999999999999999999999999999999999999999986432 34
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCC
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 448 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~ 448 (614)
++.+||+||++.+|+++||+||+.+..+.++.+.++.+++++++++.++|. ++.++++.+||||||||++|||||+.+
T Consensus 90 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~--~~~~~~~~~LSgGq~QRVaLARAL~~~ 167 (377)
T PRK11607 90 QRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQ--EFAKRKPHQLSGGQRQRVALARSLAKR 167 (377)
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 678999999999999999999999987666666667778899999999997 488999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHhc
Q 007178 449 PKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 520 (614)
Q Consensus 449 p~vllLDEPtsgLD~~~~~~i~~~l~~~-~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 520 (614)
|++|||||||+|||+..|+.+++.|+++ + .|.|+|++|||++|+..+|||+++|++|++++.|+++++..+.
T Consensus 168 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 168 PKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 9999999999999999999999999875 4 4899999999999999999999999999999999999987653
No 43
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=1.1e-49 Score=396.97 Aligned_cols=217 Identities=34% Similarity=0.604 Sum_probs=195.0
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhc
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 370 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~ 370 (614)
+++++|++|.|++.. +.+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.......++
T Consensus 1 ~l~~~~v~~~~~~~~--~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 78 (218)
T cd03266 1 MITADALTKRFRDVK--KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARR 78 (218)
T ss_pred CeEEEEEEEecCCCC--ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHh
Confidence 378999999997421 012699999999999999999999999999999999999999999999999998654455678
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCC
Q 007178 371 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 450 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~ 450 (614)
.+||+||++.+++.+|++||+.+....++....+..++++++++.+|+. +..++++.+||||||||++||||++.+|+
T Consensus 79 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~~p~ 156 (218)
T cd03266 79 RLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGME--ELLDRRVGGFSTGMRQKVAIARALVHDPP 156 (218)
T ss_pred hEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH--HHHhhhhhhcCHHHHHHHHHHHHHhcCCC
Confidence 8999999999999999999999877666555556677889999999996 47899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEc
Q 007178 451 VVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 511 (614)
Q Consensus 451 vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g 511 (614)
++||||||+|||+.+++.+++.|+++ ++|+|||++||+++++..+|||+++|++|++.+.|
T Consensus 157 illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 157 VLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 99999999999999999999999986 46899999999999999999999999999998754
No 44
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1e-49 Score=396.89 Aligned_cols=211 Identities=25% Similarity=0.448 Sum_probs=188.7
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc----HH
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MD 366 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~----~~ 366 (614)
+++++|++++|++. .+.+++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... ..
T Consensus 1 ~l~~~~l~~~~~~~----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 76 (216)
T TIGR00960 1 MIRFEQVSKAYPGG----HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIP 76 (216)
T ss_pred CeEEEEEEEEecCC----CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHH
Confidence 47899999999631 24699999999999999999999999999999999999999999999999987531 22
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHh
Q 007178 367 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 446 (614)
Q Consensus 367 ~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~ 446 (614)
..++.+||+||++.+++.+|++||+.+.....+...++.+++++++++.+|+. +..++++.+||||||||++|||||+
T Consensus 77 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~laral~ 154 (216)
T TIGR00960 77 FLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLE--GKAHALPMQLSGGEQQRVAIARAIV 154 (216)
T ss_pred HHHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh--hhhhCChhhCCHHHHHHHHHHHHHh
Confidence 35678999999999999999999999876655544445567889999999996 4789999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCEE
Q 007178 447 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSL 507 (614)
Q Consensus 447 ~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~l 507 (614)
.+|+++||||||+|||+.+++.+++.|++. ++|+|||++||+++++..+|||+++|++|++
T Consensus 155 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 155 HKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999986 4589999999999999999999999999975
No 45
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-49 Score=395.95 Aligned_cols=211 Identities=31% Similarity=0.506 Sum_probs=189.0
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcc
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 371 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ 371 (614)
++++|++|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ..++.
T Consensus 1 l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~-~~~~~ 73 (213)
T cd03259 1 LELKGLSKTYGS------VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP-PERRN 73 (213)
T ss_pred CeeeeeEEEeCC------eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc-hhhcc
Confidence 468999999963 56999999999999999999999999999999999999999999999999885422 23568
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCE
Q 007178 372 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 451 (614)
Q Consensus 372 ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~v 451 (614)
+||+||++.+++.+|++||+.+.....+...++.+++++++++.+++. +..++++.+||||||||++|||||+.+|++
T Consensus 74 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrl~la~al~~~p~~ 151 (213)
T cd03259 74 IGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLE--GLLNRYPHELSGGQQQRVALARALAREPSL 151 (213)
T ss_pred EEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh--hhhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999998865544444445567788999999996 378999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEc
Q 007178 452 VYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 511 (614)
Q Consensus 452 llLDEPtsgLD~~~~~~i~~~l~~~-~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g 511 (614)
+||||||+|||+.+++.++++|+++ + +|+|||++||++++++.+|||+++|++|++++.|
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 152 LLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999986 3 4899999999999999999999999999998765
No 46
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-49 Score=425.14 Aligned_cols=220 Identities=27% Similarity=0.452 Sum_probs=200.7
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhc
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 370 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~ 370 (614)
.++++|++|+|++ +.+++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..... .++
T Consensus 3 ~l~i~~l~~~~~~------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~-~~~ 75 (369)
T PRK11000 3 SVTLRNVTKAYGD------VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP-AER 75 (369)
T ss_pred EEEEEEEEEEeCC------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH-hHC
Confidence 5899999999973 569999999999999999999999999999999999999999999999999864322 346
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCC
Q 007178 371 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 450 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~ 450 (614)
.+||+||++.+|+.+||+||+.+....++.+.++.+++++++++.++|. +..++++.+||||||||++|||||+.+|+
T Consensus 76 ~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~~~~~~~LSgGq~QRvaLAraL~~~P~ 153 (369)
T PRK11000 76 GVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLA--HLLDRKPKALSGGQRQRVAIGRTLVAEPS 153 (369)
T ss_pred CEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCCh--hhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 7999999999999999999999887666655566677899999999996 47899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 451 VVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 451 vllLDEPtsgLD~~~~~~i~~~l~~~-~~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
++||||||+|||+.+++.+++.|+++ ++ |+|+|++|||++++..+|||+++|++|+++..|+++++.++
T Consensus 154 lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 154 VFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999986 43 89999999999999999999999999999999999988543
No 47
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.4e-49 Score=399.34 Aligned_cols=219 Identities=32% Similarity=0.470 Sum_probs=194.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhc
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 370 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~ 370 (614)
.++++|+++.|++ +.+++|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++.... ..++
T Consensus 2 ~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~ 74 (239)
T cd03296 2 SIEVRNVSKRFGD------FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVP-VQER 74 (239)
T ss_pred EEEEEeEEEEECC------EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCC-cccc
Confidence 4889999999973 56999999999999999999999999999999999999999999999999875422 2256
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCC----CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHh
Q 007178 371 SMGVCPQEDLLWETLTGREHLLFYGRLKNL----KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 446 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~----~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~ 446 (614)
.+||+||++.+++.+|++||+.+.....+. ..++..++++++++.+++. +..++++.+||||||||++|||||+
T Consensus 75 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~la~al~ 152 (239)
T cd03296 75 NVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLD--WLADRYPAQLSGGQRQRVALARALA 152 (239)
T ss_pred ceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCCh--hhhhcChhhCCHHHHHHHHHHHHHh
Confidence 799999999999999999999886544332 2234456788999999996 3789999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 447 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 447 ~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
.+|+++||||||+|||+.+++.++++|+++ ++ |+|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 153 VEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 999999999999999999999999999986 33 8999999999999999999999999999999999988754
No 48
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=2.2e-49 Score=421.19 Aligned_cols=208 Identities=27% Similarity=0.431 Sum_probs=192.5
Q ss_pred cceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHh----hcceEEEcCCCCCCCC
Q 007178 310 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI----YTSMGVCPQEDLLWET 384 (614)
Q Consensus 310 ~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~----~~~ig~~~Q~~~l~~~ 384 (614)
+.+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ..... |+++|||||++.+|++
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 579999999999999999999999999999999999999999999999999865 33333 6789999999999999
Q ss_pred CCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHH
Q 007178 385 LTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA 464 (614)
Q Consensus 385 lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~ 464 (614)
+||+||+.+...+.+.++++..+++.++++.+||. .+.++++.+||||||||++|||||+.+|+++||||||+||||.
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~--~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~ 163 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLE--EYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPL 163 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCc--hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 99999999987777766667778899999999996 4899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 465 SRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 465 ~~~~i~~~l~~~~--~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
+++.+.+.+.++. .|+|||++|||++++..+||||++|++|+++..|+++++.++
T Consensus 164 ~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 164 IRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 9999999999863 489999999999999999999999999999999999998654
No 49
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4e-49 Score=397.14 Aligned_cols=224 Identities=30% Similarity=0.481 Sum_probs=197.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc-H---H
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-M---D 366 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~-~---~ 366 (614)
+++++|++++|+++. ..+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... . .
T Consensus 1 ~i~~~~l~~~~~~~~--~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (233)
T cd03258 1 MIELKNVSKVFGDTG--GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELR 78 (233)
T ss_pred CeEEecceEEccCCC--CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHH
Confidence 378999999997421 012799999999999999999999999999999999999999999999999988542 1 2
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHh
Q 007178 367 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 446 (614)
Q Consensus 367 ~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~ 446 (614)
..++.+||+||++.+++.+|++||+.+....++....+..++++++++.+++. +..++++.+||||||||++||+||+
T Consensus 79 ~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~ 156 (233)
T cd03258 79 KARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLE--DKADAYPAQLSGGQKQRVGIARALA 156 (233)
T ss_pred HHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh--hhhhcChhhCCHHHHHHHHHHHHHh
Confidence 34678999999999999999999998865555544445567789999999996 4789999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 447 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 447 ~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
.+|+++||||||+|||+.+++.+++.|+++ ++ |+|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 157 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 157 NNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred cCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999986 44 8999999999999999999999999999999999887743
No 50
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.2e-49 Score=407.40 Aligned_cols=226 Identities=31% Similarity=0.496 Sum_probs=198.6
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc---HHH
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD---MDR 367 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~---~~~ 367 (614)
.++++|++|.|++..+ ..+.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++... ...
T Consensus 2 ~l~~~~l~~~y~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (287)
T PRK13637 2 SIKIENLTHIYMEGTP-FEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSD 80 (287)
T ss_pred EEEEEEEEEECCCCCc-cccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHH
Confidence 4889999999974211 024699999999999999999999999999999999999999999999999998642 235
Q ss_pred hhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 007178 368 IYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 445 (614)
Q Consensus 368 ~~~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al 445 (614)
.++.+||+||++ .++ .+||+||+.+.....+.++++.+++++++++.+||...+..++++.+||||||||++||+||
T Consensus 81 ~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL 159 (287)
T PRK13637 81 IRKKVGLVFQYPEYQLF-EETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVV 159 (287)
T ss_pred HhhceEEEecCchhccc-cccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHH
Confidence 678899999986 344 47999999987666566666677889999999999511367999999999999999999999
Q ss_pred hCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 446 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 446 ~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
+.+|+++||||||+|||+.++++++++|+++ ++ |+|||++||+++++..+||||++|++|++++.|+++++.+
T Consensus 160 ~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 160 AMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK 234 (287)
T ss_pred HcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999986 33 8999999999999999999999999999999999998754
No 51
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=4.5e-49 Score=396.35 Aligned_cols=218 Identities=33% Similarity=0.580 Sum_probs=195.2
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc-H-HHhh
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-M-DRIY 369 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~-~-~~~~ 369 (614)
++++|++|.|++ +.+++|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++... . ...+
T Consensus 1 l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 74 (232)
T cd03218 1 LRAENLSKRYGK------RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRAR 74 (232)
T ss_pred CeEEEEEEEeCC------EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHh
Confidence 468999999973 5699999999999999999999999999999999999999999999999987542 2 2234
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCC
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 449 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p 449 (614)
+.+||+||++.+++.+|++||+.+....++....+..++++++++.+++. +..++.+.+||||||||++||+||+.+|
T Consensus 75 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~la~al~~~p 152 (232)
T cd03218 75 LGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHIT--HLRKSKASSLSGGERRRVEIARALATNP 152 (232)
T ss_pred ccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh--hhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 67999999999999999999999865555444445566788999999996 3789999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHH
Q 007178 450 KVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 517 (614)
Q Consensus 450 ~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 517 (614)
+++||||||+|||+.+++.++++|++.. +|+|||++||+++++..+|||+++|++|++++.|+.+++.
T Consensus 153 ~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 153 KFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 9999999999999999999999999864 6899999999999999999999999999999999988764
No 52
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=4.3e-49 Score=397.50 Aligned_cols=219 Identities=31% Similarity=0.527 Sum_probs=194.4
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc-HHH-hh
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDR-IY 369 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~-~~~-~~ 369 (614)
++++|+++.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ... .+
T Consensus 1 l~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (236)
T cd03219 1 LEVRGLTKRFGG------LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIAR 74 (236)
T ss_pred CeeeeeEEEECC------EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHh
Confidence 467999999973 5699999999999999999999999999999999999999999999999988642 222 34
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCC----------CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHH
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGRLKNL----------KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRL 439 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~----------~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl 439 (614)
+.+||+||++.+++.+|++||+.+.....+. ...+..++++++++.+|+. ...++++++||||||||+
T Consensus 75 ~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv 152 (236)
T cd03219 75 LGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLA--DLADRPAGELSYGQQRRL 152 (236)
T ss_pred cCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCcc--chhhCChhhCCHHHHHHH
Confidence 6799999999999999999999886544321 1234456788999999996 378999999999999999
Q ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 440 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 440 ~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
+|||||+.+|+++||||||+|||+.+++.+++.|++++ +|+|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 153 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 153 EIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence 99999999999999999999999999999999999864 68999999999999999999999999999999999988754
No 53
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=8.7e-49 Score=421.56 Aligned_cols=225 Identities=25% Similarity=0.431 Sum_probs=201.0
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhh
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 369 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~ 369 (614)
+++++|++|.|++ +.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.. ...+.+
T Consensus 3 ~L~~~nls~~y~~------~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~ 76 (402)
T PRK09536 3 MIDVSDLSVEFGD------TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAAS 76 (402)
T ss_pred eEEEeeEEEEECC------EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHh
Confidence 6899999999973 579999999999999999999999999999999999999999999999999865 445667
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhc--CC--CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGRLK--NL--KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 445 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~--~~--~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al 445 (614)
+++||+||++.+++.+|++||+.+....+ .. ..++.+++++++++.+|+. ++.++++.+||||||||++|||||
T Consensus 77 ~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~--~~~~~~~~~LSgGerQRv~IArAL 154 (402)
T PRK09536 77 RRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVA--QFADRPVTSLSGGERQRVLLARAL 154 (402)
T ss_pred cceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHHHHHHH
Confidence 88999999999999999999998753211 11 1344567889999999997 488999999999999999999999
Q ss_pred hCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHH------HHH
Q 007178 446 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE------LKA 518 (614)
Q Consensus 446 ~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~------l~~ 518 (614)
+++|+++||||||+|||+.++++++++|+++. +|+|||++||+++++.++|||+++|++|+++..|++++ +.+
T Consensus 155 ~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~~~l~~ 234 (402)
T PRK09536 155 AQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTADTLRA 234 (402)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCcHHHHH
Confidence 99999999999999999999999999999874 68999999999999999999999999999999999997 456
Q ss_pred hcCCc
Q 007178 519 RYGGS 523 (614)
Q Consensus 519 ~~~~~ 523 (614)
.|+..
T Consensus 235 ~~~~~ 239 (402)
T PRK09536 235 AFDAR 239 (402)
T ss_pred HhCCc
Confidence 66543
No 54
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=1e-48 Score=395.07 Aligned_cols=221 Identities=30% Similarity=0.477 Sum_probs=198.1
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhc
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 370 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~ 370 (614)
+++++|++++|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.......++
T Consensus 1 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~ 74 (236)
T TIGR03864 1 ALEVAGLSFAYGA------RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALA 74 (236)
T ss_pred CEEEEeeEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhh
Confidence 4789999999973 5699999999999999999999999999999999999999999999999988643334446
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCC
Q 007178 371 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 450 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~ 450 (614)
.++|+||++.+++.+|++||+.+....++...++..++++++++.+|+. +..++++.+||||||||++|||||+.+|+
T Consensus 75 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrl~laral~~~p~ 152 (236)
T TIGR03864 75 RLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLA--ERADDKVRELNGGHRRRVEIARALLHRPA 152 (236)
T ss_pred hEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh--hhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 8999999999988999999998876655544445566788999999996 37899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHhc
Q 007178 451 VVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 520 (614)
Q Consensus 451 vllLDEPtsgLD~~~~~~i~~~l~~~~--~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 520 (614)
++||||||+|||+.+++.+++.|+++. +|+|||++||+++++.. |||+++|++|++++.|+++++.+.+
T Consensus 153 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~ 223 (236)
T TIGR03864 153 LLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVLADGAAAELRGAL 223 (236)
T ss_pred EEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEEEeCCHHHHHHHc
Confidence 999999999999999999999999863 48999999999999985 9999999999999999999887764
No 55
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.3e-49 Score=421.47 Aligned_cols=228 Identities=25% Similarity=0.408 Sum_probs=201.1
Q ss_pred CeEEEEeEEEEcCCCCC------------------CCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCc
Q 007178 290 HAIISDNLRKIYPGRDG------------------NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 351 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~------------------~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~s 351 (614)
.+|+++||+|.||.... .....+++|+||+|++||+++|+||||||||||+|+|+|+++|++
T Consensus 3 ~~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~s 82 (400)
T PRK10070 3 IKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTR 82 (400)
T ss_pred cEEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC
Confidence 46888888888876320 011348999999999999999999999999999999999999999
Q ss_pred cEEEEcCeeCCCc-HHH----hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccc
Q 007178 352 GTAYVQGLDIRTD-MDR----IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADK 426 (614)
Q Consensus 352 G~i~i~G~~i~~~-~~~----~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~ 426 (614)
|+|.++|+++... ... .++++||+||++.+++.+|++||+.+....++.+.++.++++.++++.+||. ++.++
T Consensus 83 G~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~--~~~~~ 160 (400)
T PRK10070 83 GQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLE--NYAHS 160 (400)
T ss_pred CEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC--hhhhc
Confidence 9999999998642 211 2357999999999999999999999887766665556667889999999996 47899
Q ss_pred cCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHhhCCEEEEEeC
Q 007178 427 QAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVD 504 (614)
Q Consensus 427 ~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~-~g~tIil~TH~~~e~~~l~dri~il~~ 504 (614)
++.+||||||||++|||||+.+|+++||||||+|||+.+++.+++.|+++ + .|+|||++||+++++..+|||+++|++
T Consensus 161 ~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~ 240 (400)
T PRK10070 161 YPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQN 240 (400)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999986 3 489999999999999999999999999
Q ss_pred CEEEEEcCHHHHHHh
Q 007178 505 GSLQCIGNPKELKAR 519 (614)
Q Consensus 505 G~l~~~g~~~~l~~~ 519 (614)
|+++..|+++++.+.
T Consensus 241 G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 241 GEVVQVGTPDEILNN 255 (400)
T ss_pred CEEEecCCHHHHHhC
Confidence 999999999988654
No 56
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5e-49 Score=390.49 Aligned_cols=211 Identities=37% Similarity=0.646 Sum_probs=191.0
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcc
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 371 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ 371 (614)
++++|++|.|++ +.+++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|+++.......++.
T Consensus 1 i~~~~~~~~~~~------~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 73 (211)
T cd03264 1 LQLENLTKRYGK------KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRR 73 (211)
T ss_pred CEEEEEEEEECC------EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhh
Confidence 468999999963 46999999999999 99999999999999999999999999999999999886433456788
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCE
Q 007178 372 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 451 (614)
Q Consensus 372 ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~v 451 (614)
++|+||++.+++.+|++||+.+.....+...++.+++++++++.+++. +..++++.+||||||||++|||||+.+|++
T Consensus 74 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~~p~l 151 (211)
T cd03264 74 IGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLG--DRAKKKIGSLSGGMRRRVGIAQALVGDPSI 151 (211)
T ss_pred eEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCH--HHHhCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999999876665544445567889999999996 367899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEc
Q 007178 452 VYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 511 (614)
Q Consensus 452 llLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g 511 (614)
+||||||+|||+.+++.+++.|++.++++|||++||+++++.++|||+++|++|++++.|
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 152 LIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999998766799999999999999999999999999998764
No 57
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-48 Score=405.82 Aligned_cols=225 Identities=23% Similarity=0.378 Sum_probs=198.7
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-----cH
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-----DM 365 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-----~~ 365 (614)
+|+++|+++.|++... ..+.+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|.++.. ..
T Consensus 1 mi~~~~v~~~y~~~~~-~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 79 (288)
T PRK13643 1 MIKFEKVNYTYQPNSP-FASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEI 79 (288)
T ss_pred CEEEEEEEEEeCCCCc-ccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccH
Confidence 4889999999974210 01369999999999999999999999999999999999999999999999999842 23
Q ss_pred HHhhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 007178 366 DRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 443 (614)
Q Consensus 366 ~~~~~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~ 443 (614)
...++.+||+||++ .+++ .||.||+.|.....+.+.++.++++.++++.++|.+ .+.++++.+||||||||++||+
T Consensus 80 ~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~~LSgGqkqrvaiA~ 157 (288)
T PRK13643 80 KPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLAD-EFWEKSPFELSGGQMRRVAIAG 157 (288)
T ss_pred HHHHhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCh-hhccCCcccCCHHHHHHHHHHH
Confidence 45678899999986 5676 599999998765556566667778999999999952 3679999999999999999999
Q ss_pred HHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 444 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 444 al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
||+.+|+++||||||+|||+.+++.+++.+++++ +|+|||++||+++++..+||||++|++|++++.|+++++..
T Consensus 158 aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 233 (288)
T PRK13643 158 ILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233 (288)
T ss_pred HHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 9999999999999999999999999999999864 59999999999999999999999999999999999998754
No 58
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-48 Score=403.00 Aligned_cols=220 Identities=29% Similarity=0.444 Sum_probs=195.8
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 368 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~ 368 (614)
++++++|++|.|++ .+.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.. .....
T Consensus 3 ~~l~~~~l~~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 77 (274)
T PRK13647 3 NIIEVEDLHFRYKD-----GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWV 77 (274)
T ss_pred ceEEEEEEEEEeCC-----CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHH
Confidence 46999999999963 2469999999999999999999999999999999999999999999999999864 33455
Q ss_pred hcceEEEcCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhC
Q 007178 369 YTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 447 (614)
Q Consensus 369 ~~~ig~~~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~ 447 (614)
++.+||+||++. .+..+||+||+.+.....+...++.+++++++++.+||. +..++++.+||||||||++|||||+.
T Consensus 78 ~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~LSgG~~qrv~laraL~~ 155 (274)
T PRK13647 78 RSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMW--DFRDKPPYHLSYGQKKRVAIAGVLAM 155 (274)
T ss_pred HhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH--HHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 678999999963 344579999998865544555556667889999999996 47899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHH
Q 007178 448 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 516 (614)
Q Consensus 448 ~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l 516 (614)
+|+++||||||+|||+.++++++++|+++ ++|+|||++||+++++.++|||+++|++|++++.|+++++
T Consensus 156 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 156 DPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999999999999986 4589999999999999999999999999999999998754
No 59
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1.3e-48 Score=412.22 Aligned_cols=232 Identities=24% Similarity=0.361 Sum_probs=203.2
Q ss_pred CCeEEEEeEEEEcCCCCC-------CCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeC
Q 007178 289 SHAIISDNLRKIYPGRDG-------NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI 361 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~-------~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i 361 (614)
.++++++||++.|+.+.+ ...+.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 357999999999974211 0135799999999999999999999999999999999999999999999999998
Q ss_pred CCc----HHHhhcceEEEcCCC--CCCCCCCHHHHHHHHhhhc--CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCCh
Q 007178 362 RTD----MDRIYTSMGVCPQED--LLWETLTGREHLLFYGRLK--NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSG 433 (614)
Q Consensus 362 ~~~----~~~~~~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSg 433 (614)
... ....+++++|+||++ .+++.+|+.||+.+..... +.++++.++++.++++.++|.+ +..++++++|||
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~-~~~~~~p~~LSg 164 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLP-NLINRYPHEFSG 164 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh-HHhcCCcccCCH
Confidence 642 234567899999997 6899999999998865443 3455666778899999999953 468999999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEc
Q 007178 434 GMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 511 (614)
Q Consensus 434 G~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~--~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g 511 (614)
|||||++|||||+.+|++||+||||+|||+.++++++++|++++ .|.|||++|||++++..+||||++|.+|++++.|
T Consensus 165 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g 244 (331)
T PRK15079 165 GQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELG 244 (331)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 99999999999999999999999999999999999999999864 3899999999999999999999999999999999
Q ss_pred CHHHHHHhcC
Q 007178 512 NPKELKARYG 521 (614)
Q Consensus 512 ~~~~l~~~~~ 521 (614)
+++++.+...
T Consensus 245 ~~~~i~~~~~ 254 (331)
T PRK15079 245 TYDEVYHNPL 254 (331)
T ss_pred CHHHHHcCCC
Confidence 9999876543
No 60
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.4e-49 Score=391.49 Aligned_cols=214 Identities=29% Similarity=0.455 Sum_probs=190.8
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcc
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 371 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ 371 (614)
++++|++|.|++.. ..+.+++|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. .++.
T Consensus 1 l~~~~l~~~~~~~~--~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~----~~~~ 74 (220)
T cd03293 1 LEVRNVSKTYGGGG--GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG----PGPD 74 (220)
T ss_pred CeEEEEEEEcCCCC--cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc----ccCc
Confidence 46899999997421 01569999999999999999999999999999999999999999999999998752 3567
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCE
Q 007178 372 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 451 (614)
Q Consensus 372 ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~v 451 (614)
+||+||++.+++.+|++||+.+....++.+.++..++++++++.+++. +..++++.+||||||||++|||||+.+|++
T Consensus 75 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrl~la~al~~~p~l 152 (220)
T cd03293 75 RGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLS--GFENAYPHQLSGGMRQRVALARALAVDPDV 152 (220)
T ss_pred EEEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh--hhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 999999999999999999999876555554455567889999999996 378999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHhhCCEEEEEe--CCEEEEEcCH
Q 007178 452 VYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFV--DGSLQCIGNP 513 (614)
Q Consensus 452 llLDEPtsgLD~~~~~~i~~~l~~~-~-~g~tIil~TH~~~e~~~l~dri~il~--~G~l~~~g~~ 513 (614)
+||||||+|||+.+++.++++|++. + +|+|||++||+++++..+||++++|+ +|+++..++.
T Consensus 153 llLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 153 LLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999986 4 48999999999999999999999999 7999988764
No 61
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=1.6e-48 Score=396.33 Aligned_cols=221 Identities=28% Similarity=0.481 Sum_probs=196.7
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC-----ccEEEEcCeeCCC--
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT-----SGTAYVQGLDIRT-- 363 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~-----sG~i~i~G~~i~~-- 363 (614)
+++++|++++|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 1 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~ 74 (247)
T TIGR00972 1 AIEIENLNLFYGE------KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKK 74 (247)
T ss_pred CEEEEEEEEEECC------eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccc
Confidence 4789999999973 46999999999999999999999999999999999999998 9999999998853
Q ss_pred -cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCCC--CcccccCCCCChhHHHHH
Q 007178 364 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFHG--GVADKQAGKYSGGMKRRL 439 (614)
Q Consensus 364 -~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~--~~~~~~~~~LSgG~kqrl 439 (614)
.....++.+||+||++.+++ +|++||+.+....++. +.++..++++++++.+|+.+. +..++++.+||||||||+
T Consensus 75 ~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv 153 (247)
T TIGR00972 75 IDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRL 153 (247)
T ss_pred cchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHH
Confidence 23455778999999999998 9999999986655442 334556788999999999610 257889999999999999
Q ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 440 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 440 ~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
+|||||+.+|+++||||||+|||+.+++.++++|+++++++|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 154 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (247)
T TIGR00972 154 CIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT 232 (247)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999987656999999999999999999999999999999999988754
No 62
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=6.6e-49 Score=390.09 Aligned_cols=211 Identities=28% Similarity=0.481 Sum_probs=189.9
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcc
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 371 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ 371 (614)
++++|+++.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ..++.
T Consensus 1 i~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~-~~~~~ 73 (213)
T cd03301 1 VELENVTKRFGN------VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLP-PKDRD 73 (213)
T ss_pred CEEEeeEEEECC------eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCC-cccce
Confidence 468999999974 46999999999999999999999999999999999999999999999999885422 22467
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCE
Q 007178 372 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 451 (614)
Q Consensus 372 ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~v 451 (614)
++|+||++.+++.+|++||+.+.....+...++.+++++++++.+|+. +..++++.+||||||||++|||||+.+|++
T Consensus 74 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qr~~laral~~~p~l 151 (213)
T cd03301 74 IAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIE--HLLDRKPKQLSGGQRQRVALGRAIVREPKV 151 (213)
T ss_pred EEEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH--HHHhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999999876555544555667889999999996 478999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEc
Q 007178 452 VYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 511 (614)
Q Consensus 452 llLDEPtsgLD~~~~~~i~~~l~~~-~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g 511 (614)
+||||||+|||+.+++.+++.|++. + +|+|||++||+++++..+|||+++|++|++++.|
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 152 FLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999986 3 4899999999999999999999999999999875
No 63
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=7.1e-49 Score=393.79 Aligned_cols=215 Identities=27% Similarity=0.472 Sum_probs=189.7
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCC-----CCCccEEEEcCeeCCCc--
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT-----RTTSGTAYVQGLDIRTD-- 364 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~-----~p~sG~i~i~G~~i~~~-- 364 (614)
|+++|+++.|++ +.+++|+||++++||+++|+||||||||||+|+|+|++ +|++|+|.++|+++...
T Consensus 1 i~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 74 (227)
T cd03260 1 IELRDLNVYYGD------KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDV 74 (227)
T ss_pred CEEEEEEEEcCC------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcch
Confidence 468999999973 46999999999999999999999999999999999999 99999999999987542
Q ss_pred -HHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc-hhHHHHHHHHHHHcCCCCCCccccc--CCCCChhHHHHHH
Q 007178 365 -MDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG-PALTQAVEESLKSVNLFHGGVADKQ--AGKYSGGMKRRLS 440 (614)
Q Consensus 365 -~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~--~~~LSgG~kqrl~ 440 (614)
....++.+||+||++.++ .+|++||+.+.....+... .+.+++++++++.+|+.+ ..+++ +.+||||||||++
T Consensus 75 ~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~~LSgG~~qrv~ 151 (227)
T cd03260 75 DVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWD--EVKDRLHALGLSGGQQQRLC 151 (227)
T ss_pred HHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCCh--HHhccCCcccCCHHHHHHHH
Confidence 344567899999999888 7899999988665544332 234677889999999963 55666 5999999999999
Q ss_pred HHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHH
Q 007178 441 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 515 (614)
Q Consensus 441 ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~ 515 (614)
|||||+.+|+++||||||+|||+.+++.+++.|++.++.+|||++||+++++..+|||+++|++|++++.|++++
T Consensus 152 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 152 LARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 999999999999999999999999999999999987434999999999999999999999999999999998765
No 64
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-48 Score=395.58 Aligned_cols=220 Identities=32% Similarity=0.509 Sum_probs=193.5
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc----HHH
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MDR 367 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~----~~~ 367 (614)
++++|+++.|++ ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ...
T Consensus 1 l~~~~l~~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 75 (241)
T cd03256 1 IEVENLSKTYPN-----GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQ 75 (241)
T ss_pred CEEeeEEEecCC-----ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHH
Confidence 468999999973 14699999999999999999999999999999999999999999999999988542 334
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhh--------hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHH
Q 007178 368 IYTSMGVCPQEDLLWETLTGREHLLFYGR--------LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRL 439 (614)
Q Consensus 368 ~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~--------~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl 439 (614)
.++.+||+||++.+++.+|++||+.+... +.+...+...+++.++++.+++. +..++++.+||||||||+
T Consensus 76 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv 153 (241)
T cd03256 76 LRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLL--DKAYQRADQLSGGQQQRV 153 (241)
T ss_pred HHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCCh--hhhCCCcccCCHHHHHHH
Confidence 56789999999999999999999986432 11222234456788999999996 378999999999999999
Q ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHH
Q 007178 440 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 517 (614)
Q Consensus 440 ~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 517 (614)
+|||||+.+|+++||||||+|||+.+++.+++.|+++ + +|+|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 154 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 154 AIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 9999999999999999999999999999999999986 3 4899999999999999999999999999999999998874
Q ss_pred H
Q 007178 518 A 518 (614)
Q Consensus 518 ~ 518 (614)
+
T Consensus 234 ~ 234 (241)
T cd03256 234 D 234 (241)
T ss_pred H
Confidence 4
No 65
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.7e-48 Score=394.38 Aligned_cols=220 Identities=27% Similarity=0.436 Sum_probs=196.7
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC---cHHH
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---DMDR 367 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~---~~~~ 367 (614)
+++++|+++.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ....
T Consensus 1 ~l~~~~l~~~~~~------~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 74 (240)
T PRK09493 1 MIEFKNVSKHFGP------TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERL 74 (240)
T ss_pred CEEEEeEEEEECC------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHH
Confidence 3789999999973 569999999999999999999999999999999999999999999999998864 2234
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhh-hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHh
Q 007178 368 IYTSMGVCPQEDLLWETLTGREHLLFYGR-LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 446 (614)
Q Consensus 368 ~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~ 446 (614)
.++.+||+||++.+++.+|++||+.+... ..+...++..+++.++++.+|+. +..++++.+||||||||++|||||+
T Consensus 75 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrv~la~al~ 152 (240)
T PRK09493 75 IRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLA--ERAHHYPSELSGGQQQRVAIARALA 152 (240)
T ss_pred HhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCh--HHHhcChhhcCHHHHHHHHHHHHHh
Confidence 56789999999999999999999987542 23344445567788999999996 3789999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 447 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 447 ~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
.+|+++||||||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus 153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (240)
T PRK09493 153 VKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK 225 (240)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhc
Confidence 9999999999999999999999999999864 68999999999999999999999999999999999888754
No 66
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-48 Score=395.47 Aligned_cols=222 Identities=33% Similarity=0.539 Sum_probs=197.4
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhhc
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 370 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~~ 370 (614)
++++|++++|++ .+.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .....++
T Consensus 1 l~~~~l~~~~~~-----~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 75 (242)
T cd03295 1 IEFENVTKRYGG-----GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRR 75 (242)
T ss_pred CEEEEEEEEeCC-----cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhc
Confidence 468999999973 1469999999999999999999999999999999999999999999999998754 3345567
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCC
Q 007178 371 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 450 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~ 450 (614)
.+||+||++.+++.+|++||+.++..+.+...++..+++.++++.+++.+.++.++++.+||||||||++|||||+.+|+
T Consensus 76 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 155 (242)
T cd03295 76 KIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPP 155 (242)
T ss_pred ceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 89999999999999999999998766555444555677899999999962026789999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 451 VVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 451 vllLDEPtsgLD~~~~~~i~~~l~~~-~~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
++||||||+|||+.+++.+++.|++. ++ |+|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 156 llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 225 (242)
T cd03295 156 LLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225 (242)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHc
Confidence 99999999999999999999999986 33 8999999999999999999999999999999999888754
No 67
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-48 Score=405.94 Aligned_cols=225 Identities=27% Similarity=0.423 Sum_probs=197.7
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-----cH
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-----DM 365 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-----~~ 365 (614)
.++++|++|+|++..+ ..+.+|+|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ..
T Consensus 2 ~l~~~~l~~~y~~~~~-~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (290)
T PRK13634 2 DITFQKVEHRYQYKTP-FERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKL 80 (290)
T ss_pred EEEEEEEEEEECCCCc-ccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchH
Confidence 3889999999974211 02469999999999999999999999999999999999999999999999998842 23
Q ss_pred HHhhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 007178 366 DRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 443 (614)
Q Consensus 366 ~~~~~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~ 443 (614)
...++.+||+||++ .+++ .||+||+.+.....+.+.++.+++++++++.+||.+ ...++++.+||||||||++|||
T Consensus 81 ~~~~~~ig~v~q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~~LSgGq~qrv~lAr 158 (290)
T PRK13634 81 KPLRKKVGIVFQFPEHQLFE-ETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPE-ELLARSPFELSGGQMRRVAIAG 158 (290)
T ss_pred HHHHhhEEEEeeCchhhhhh-hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCCh-hhhhCCcccCCHHHHHHHHHHH
Confidence 45667899999986 4664 699999998765556566666678999999999962 3679999999999999999999
Q ss_pred HHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 444 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 444 al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
||+.+|+++||||||+|||+.+++.++++|+++ + .|+|||++||+++++..+||||++|++|++++.|+++++.+
T Consensus 159 aL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 235 (290)
T PRK13634 159 VLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235 (290)
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999999999999986 3 38999999999999999999999999999999999988754
No 68
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-48 Score=387.26 Aligned_cols=209 Identities=32% Similarity=0.567 Sum_probs=189.6
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcc
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 371 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ 371 (614)
++++|+++.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ..++.
T Consensus 1 l~~~~l~~~~~~------~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~---~~~~~ 71 (210)
T cd03269 1 LEVENVTKRFGR------VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI---AARNR 71 (210)
T ss_pred CEEEEEEEEECC------EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH---HHHcc
Confidence 468999999963 569999999999999999999999999999999999999999999999988743 34678
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCE
Q 007178 372 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 451 (614)
Q Consensus 372 ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~v 451 (614)
++|+||++.+++.+|++||+.+....++.+..+.+++++++++.+++. +..++++.+||||||||++||+||+.+|++
T Consensus 72 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~la~al~~~p~~ 149 (210)
T cd03269 72 IGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELS--EYANKRVEELSKGNQQKVQFIAAVIHDPEL 149 (210)
T ss_pred EEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCh--HHHhCcHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999999876665555555667889999999996 378899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEc
Q 007178 452 VYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 511 (614)
Q Consensus 452 llLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g 511 (614)
+||||||+|||+.+++.+++.|++. ++|+|||++||+.+++..+|||+++|++|++.+.|
T Consensus 150 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 150 LILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 9999999999999999999999986 46899999999999999999999999999998754
No 69
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=7.4e-49 Score=391.13 Aligned_cols=211 Identities=30% Similarity=0.453 Sum_probs=185.4
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcH----H-
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM----D- 366 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~----~- 366 (614)
++++|+++.|++.. ..+.+++|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++.... .
T Consensus 1 l~~~~l~~~~~~~~--~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 78 (218)
T cd03255 1 IELKNLSKTYGGGG--EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAA 78 (218)
T ss_pred CeEeeeEEEecCCC--cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHH
Confidence 46899999997421 0156999999999999999999999999999999999999999999999999875421 1
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHh
Q 007178 367 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 446 (614)
Q Consensus 367 ~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~ 446 (614)
..++.+||+||++.+++.+|++||+.+....++....+.+++++++++.+||. +..++++.+||||||||++|||||+
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~ 156 (218)
T cd03255 79 FRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLG--DRLNHYPSELSGGQQQRVAIARALA 156 (218)
T ss_pred HHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc--hhhhcChhhcCHHHHHHHHHHHHHc
Confidence 13467999999999999999999999876655544444566789999999996 3679999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHhhCCEEEEEeCCEE
Q 007178 447 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSL 507 (614)
Q Consensus 447 ~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~-~g~tIil~TH~~~e~~~l~dri~il~~G~l 507 (614)
.+|+++||||||+|||+.+++.++++|++. + +|+|||++||++++++ +|||+++|++|++
T Consensus 157 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 157 NDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence 999999999999999999999999999986 4 4899999999999997 9999999999974
No 70
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.8e-48 Score=393.19 Aligned_cols=219 Identities=26% Similarity=0.401 Sum_probs=194.8
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc-HH-Hh
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MD-RI 368 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~-~~-~~ 368 (614)
+++++|++|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .. ..
T Consensus 2 ~i~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~ 75 (242)
T TIGR03411 2 ILYLEGLSVSFDG------FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIA 75 (242)
T ss_pred eEEEEeeEEEcCC------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHH
Confidence 5899999999973 4699999999999999999999999999999999999999999999999987542 22 23
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhc--------CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHH
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLK--------NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 440 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~--------~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ 440 (614)
++.+||+||++.+++.+|++||+.+..... +...++.+++++++++.+|+. +..++++++||||||||++
T Consensus 76 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~Ge~qrv~ 153 (242)
T TIGR03411 76 RAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLA--DEADRLAGLLSHGQKQWLE 153 (242)
T ss_pred hcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHH
Confidence 467999999999999999999998854321 112234456789999999996 3789999999999999999
Q ss_pred HHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHH
Q 007178 441 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 517 (614)
Q Consensus 441 ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 517 (614)
||||++.+|+++||||||+|||+.+++.++++|+++.+++|||++||+++++..+|||+++|++|++++.|+++++.
T Consensus 154 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 230 (242)
T TIGR03411 154 IGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQ 230 (242)
T ss_pred HHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHh
Confidence 99999999999999999999999999999999999766899999999999999999999999999999999988874
No 71
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-48 Score=406.22 Aligned_cols=225 Identities=26% Similarity=0.376 Sum_probs=197.7
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-------
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT------- 363 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~------- 363 (614)
.|+++|++++|++... ..+.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..
T Consensus 2 ~i~~~~l~~~y~~~~~-~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (305)
T PRK13651 2 QIKVKNIVKIFNKKLP-TELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEK 80 (305)
T ss_pred EEEEEEEEEEECCCCC-ccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccc
Confidence 4889999999974210 12369999999999999999999999999999999999999999999999876521
Q ss_pred ------------------cHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCc
Q 007178 364 ------------------DMDRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGV 423 (614)
Q Consensus 364 ------------------~~~~~~~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~ 423 (614)
.....++.+||+||++ .++ ..||+||+.+.....+.+.++.+++++++++.+||.+ ++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~ 158 (305)
T PRK13651 81 EKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDE-SY 158 (305)
T ss_pred cccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh-hh
Confidence 2245678899999985 455 4699999998766566666677788999999999962 47
Q ss_pred ccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEE
Q 007178 424 ADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF 502 (614)
Q Consensus 424 ~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il 502 (614)
.++++.+||||||||++||+||+.+|+++||||||+|||+.+++.+++.|+++ ++|+|||++||+++++..+||||++|
T Consensus 159 ~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl 238 (305)
T PRK13651 159 LQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFF 238 (305)
T ss_pred hhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEE
Confidence 89999999999999999999999999999999999999999999999999986 46999999999999999999999999
Q ss_pred eCCEEEEEcCHHHHHH
Q 007178 503 VDGSLQCIGNPKELKA 518 (614)
Q Consensus 503 ~~G~l~~~g~~~~l~~ 518 (614)
++|++++.|+++++.+
T Consensus 239 ~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 239 KDGKIIKDGDTYDILS 254 (305)
T ss_pred ECCEEEEECCHHHHhc
Confidence 9999999999998754
No 72
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-48 Score=402.73 Aligned_cols=225 Identities=25% Similarity=0.411 Sum_probs=197.0
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc-----H
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-----M 365 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~-----~ 365 (614)
.++++|++|.|++... ..+.+++|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++... .
T Consensus 2 ~i~~~~l~~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (287)
T PRK13641 2 SIKFENVDYIYSPGTP-MEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNL 80 (287)
T ss_pred EEEEEEEEEEcCCCCC-ccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchH
Confidence 5889999999974210 014699999999999999999999999999999999999999999999999988531 3
Q ss_pred HHhhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 007178 366 DRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 443 (614)
Q Consensus 366 ~~~~~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~ 443 (614)
...++.+||+||++ .++ .+|++||+.+.....+...++..++++++++.+||.. ++.++++++||||||||++|||
T Consensus 81 ~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~~LSgGq~qrl~lar 158 (287)
T PRK13641 81 KKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSE-DLISKSPFELSGGQMRRVAIAG 158 (287)
T ss_pred HHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh-hHhhCCcccCCHHHHHHHHHHH
Confidence 45567899999996 455 5799999987655445555566678899999999952 3789999999999999999999
Q ss_pred HHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 444 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 444 al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
||+.+|++|||||||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus 159 al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 159 VMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999874 69999999999999999999999999999999999998754
No 73
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1.5e-48 Score=387.75 Aligned_cols=209 Identities=28% Similarity=0.466 Sum_probs=187.4
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc----HH
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MD 366 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~----~~ 366 (614)
+++++|++|.|++ ++.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ..
T Consensus 1 ~l~~~~l~~~~~~-----~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (214)
T TIGR02673 1 MIEFHNVSKAYPG-----GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLP 75 (214)
T ss_pred CEEEEeeeEEeCC-----CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHH
Confidence 4789999999952 25699999999999999999999999999999999999999999999999988542 12
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHh
Q 007178 367 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 446 (614)
Q Consensus 367 ~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~ 446 (614)
..++.+||+||++.+++.+|++||+.+.....+...++.+++++++++.+++. +..++++.+||||||||++|||||+
T Consensus 76 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~la~al~ 153 (214)
T TIGR02673 76 LLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLE--HKADAFPEQLSGGEQQRVAIARAIV 153 (214)
T ss_pred HHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh--hhhhCChhhCCHHHHHHHHHHHHHh
Confidence 35678999999999999999999999876555544445567889999999996 3678999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCE
Q 007178 447 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGS 506 (614)
Q Consensus 447 ~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~ 506 (614)
.+|+++||||||+|||+.+++.+++.|+++ ++|+|||++||+++++..+|||+++|++|+
T Consensus 154 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 154 NSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999986 468999999999999999999999999985
No 74
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-48 Score=401.81 Aligned_cols=224 Identities=26% Similarity=0.431 Sum_probs=199.2
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 368 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~ 368 (614)
++++++|+++.|++.. .+.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.. .....
T Consensus 3 ~~l~~~~l~~~~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 79 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQ---EKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDI 79 (279)
T ss_pred ceEEEEeEEEEcCCCC---cCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHH
Confidence 3699999999997421 2469999999999999999999999999999999999999999999999999864 34456
Q ss_pred hcceEEEcCCC-CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhC
Q 007178 369 YTSMGVCPQED-LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 447 (614)
Q Consensus 369 ~~~ig~~~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~ 447 (614)
++++||+||++ .+++.+||+||+.+.....+.+.++..++++++++.+||. +..++++.+||||||||++|||||+.
T Consensus 80 ~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LSgGq~qrv~lAral~~ 157 (279)
T PRK13650 80 RHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQ--DFKEREPARLSGGQKQRVAIAGAVAM 157 (279)
T ss_pred HhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCH--hHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 77899999997 4677789999999876555666666677899999999996 47899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 448 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 448 ~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
+|+++||||||+|||+.+++.+++.|+++ ++ |+|||++||+++++. .|||+++|++|+++..|+++++...
T Consensus 158 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~-~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 158 RPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHHHHHcC
Confidence 99999999999999999999999999986 33 899999999999995 7999999999999999999887543
No 75
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-48 Score=406.88 Aligned_cols=227 Identities=22% Similarity=0.374 Sum_probs=198.8
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-----
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT----- 363 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~----- 363 (614)
.++|+++|+++.|++... ..+.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|+++..
T Consensus 19 ~~~l~~~nl~~~y~~~~~-~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~ 97 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQE-NELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97 (320)
T ss_pred CceEEEEeEEEEeCCCCc-ccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccc
Confidence 357999999999974210 12469999999999999999999999999999999999999999999999988743
Q ss_pred ------------cHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCC
Q 007178 364 ------------DMDRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAG 429 (614)
Q Consensus 364 ------------~~~~~~~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~ 429 (614)
.....++.+||+||++ .+++. |++||+.+.....+.+.++..++++++++.+||.+ .+.++.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~ 175 (320)
T PRK13631 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD-TIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD-SYLERSPF 175 (320)
T ss_pred cccccccccccchHHHHHhcEEEEEECchhccccc-hHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh-hHhcCCcc
Confidence 2345678899999987 57764 99999988654445555566678899999999952 36899999
Q ss_pred CCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEE
Q 007178 430 KYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQ 508 (614)
Q Consensus 430 ~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~l~ 508 (614)
+||||||||++|||||+.+|+++||||||+|||+.+++.++++|+++ ++|+|||++||+++++..+|||+++|++|+++
T Consensus 176 ~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~ 255 (320)
T PRK13631 176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKIL 255 (320)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999886 46999999999999999999999999999999
Q ss_pred EEcCHHHHHH
Q 007178 509 CIGNPKELKA 518 (614)
Q Consensus 509 ~~g~~~~l~~ 518 (614)
+.|+++++..
T Consensus 256 ~~g~~~~~~~ 265 (320)
T PRK13631 256 KTGTPYEIFT 265 (320)
T ss_pred EeCCHHHHhc
Confidence 9999998754
No 76
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-48 Score=401.95 Aligned_cols=225 Identities=24% Similarity=0.414 Sum_probs=197.8
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-----cH
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-----DM 365 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-----~~ 365 (614)
.++++|++|.|++..+ ..+.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. ..
T Consensus 2 ~l~~~~l~~~y~~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (286)
T PRK13646 2 TIRFDNVSYTYQKGTP-YEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYI 80 (286)
T ss_pred EEEEEEEEEEECCCCc-cccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchH
Confidence 4889999999964210 02469999999999999999999999999999999999999999999999999853 23
Q ss_pred HHhhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 007178 366 DRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 443 (614)
Q Consensus 366 ~~~~~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~ 443 (614)
...++.|||+||++ .+++ .|++||+.+.....+.+.++..++++++++.+||.. +..++++.+||||||||++|||
T Consensus 81 ~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~~LSgGq~qrv~lar 158 (286)
T PRK13646 81 RPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSR-DVMSQSPFQMSGGQMRKIAIVS 158 (286)
T ss_pred HHHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh-hhhhCCcccCCHHHHHHHHHHH
Confidence 45678899999986 5666 499999998765555566667778999999999952 3678999999999999999999
Q ss_pred HHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 444 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 444 al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~--~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
||+.+|+++||||||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 159 aL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 159 ILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999863 48999999999999999999999999999999999988754
No 77
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1.7e-48 Score=385.86 Aligned_cols=207 Identities=32% Similarity=0.596 Sum_probs=187.0
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcc
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 371 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ 371 (614)
++++|++|+|++ +.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++... ...++.
T Consensus 1 l~~~~l~~~~~~------~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~ 73 (208)
T cd03268 1 LKTNDLTKTYGK------KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN-IEALRR 73 (208)
T ss_pred CEEEEEEEEECC------eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch-HHHHhh
Confidence 468999999963 5699999999999999999999999999999999999999999999999987543 445678
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCE
Q 007178 372 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 451 (614)
Q Consensus 372 ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~v 451 (614)
++|+||++.+++.+|++||+.++....+. .+++++++++.+++. +..++++.+||||||||+++|+|++.+|++
T Consensus 74 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~----~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~~p~l 147 (208)
T cd03268 74 IGALIEAPGFYPNLTARENLRLLARLLGI----RKKRIDEVLDVVGLK--DSAKKKVKGFSLGMKQRLGIALALLGNPDL 147 (208)
T ss_pred EEEecCCCccCccCcHHHHHHHHHHhcCC----cHHHHHHHHHHcCCH--HHHhhhHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999999987654432 245678899999996 378999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEc
Q 007178 452 VYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 511 (614)
Q Consensus 452 llLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g 511 (614)
+||||||+|||+.+++.+++.|++.+ +|+|||++||+++++..+||++++|++|++++.|
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 148 LILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999864 6899999999999999999999999999998765
No 78
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=2.3e-48 Score=415.32 Aligned_cols=209 Identities=27% Similarity=0.438 Sum_probs=189.2
Q ss_pred ccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCe----eCCC-cH---HHhh-cceEEEcCCC
Q 007178 309 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGL----DIRT-DM---DRIY-TSMGVCPQED 379 (614)
Q Consensus 309 ~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~----~i~~-~~---~~~~-~~ig~~~Q~~ 379 (614)
...+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+ ++.. .. .+.| +++||+||++
T Consensus 36 ~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~ 115 (382)
T TIGR03415 36 LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKF 115 (382)
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCC
Confidence 367999999999999999999999999999999999999999999999997 4432 11 2233 5799999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCC
Q 007178 380 LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPST 459 (614)
Q Consensus 380 ~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPts 459 (614)
.+++.+|++||+.+.....+.++++.+++++++++.+||. ++.++++.+||||||||++|||||+.+|+++||||||+
T Consensus 116 ~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~--~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts 193 (382)
T TIGR03415 116 ALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLA--QWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFS 193 (382)
T ss_pred cCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 9999999999999887666666666678899999999996 48899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 460 GLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 460 gLD~~~~~~i~~~l~~~~--~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
||||.+++++++.|.+++ .|+|||++|||++++.++||||++|++|+++..|+++++..+
T Consensus 194 ~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 194 ALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 999999999999999863 389999999999999999999999999999999999998654
No 79
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=4.4e-48 Score=398.01 Aligned_cols=222 Identities=23% Similarity=0.389 Sum_probs=196.7
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc----H
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----M 365 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~----~ 365 (614)
++|+++|+++.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .
T Consensus 6 ~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 79 (269)
T PRK11831 6 NLVDMRGVSFTRGN------RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRL 79 (269)
T ss_pred ceEEEeCeEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhH
Confidence 47999999999963 5699999999999999999999999999999999999999999999999987532 1
Q ss_pred HHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 007178 366 DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 444 (614)
Q Consensus 366 ~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~a 444 (614)
...++.+||+||++.+++.+|+.||+.+..... +.+.++.++++.++++.+|+. +..++++.+||||||||++||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgGq~qrv~lara 157 (269)
T PRK11831 80 YTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLR--GAAKLMPSELSGGMARRAALARA 157 (269)
T ss_pred HHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCCh--hhhhCChhhCCHHHHHHHHHHHH
Confidence 234678999999999999999999998754322 233344456788899999996 37899999999999999999999
Q ss_pred HhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 445 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 445 l~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
|+.+|+++||||||+|||+.+++.++++|+++ ++ |+|||++||+++++..+|||+++|++|+++..|+++++.++
T Consensus 158 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 234 (269)
T PRK11831 158 IALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQAN 234 (269)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999986 34 89999999999999999999999999999999999887653
No 80
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=2.7e-48 Score=388.03 Aligned_cols=216 Identities=28% Similarity=0.455 Sum_probs=191.4
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc-HH-Hhh
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MD-RIY 369 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~-~~-~~~ 369 (614)
++++|++|+|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++... .. ..+
T Consensus 1 l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (222)
T cd03224 1 LEVENLNAGYGK------SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERAR 74 (222)
T ss_pred CEEeeEEeecCC------eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHh
Confidence 468999999973 4699999999999999999999999999999999999999999999999988542 22 235
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHc-CCCCCCcccccCCCCChhHHHHHHHHHHHhCC
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSV-NLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 448 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~ 448 (614)
+.+||+||++.+++.+|++||+.+.....+ ..+.+++++++++.+ ++. +..++++.+||||||||++|||||+.+
T Consensus 75 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~~ 150 (222)
T cd03224 75 AGIGYVPEGRRIFPELTVEENLLLGAYARR--RAKRKARLERVYELFPRLK--ERRKQLAGTLSGGEQQMLAIARALMSR 150 (222)
T ss_pred cCeEEeccccccCCCCcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhh--hhhhCchhhCCHHHHHHHHHHHHHhcC
Confidence 679999999999999999999988755433 233455677888888 465 367999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHH
Q 007178 449 PKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 517 (614)
Q Consensus 449 p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 517 (614)
|+++||||||+|||+.+++.+++.|++.+ +|+|||++||+++++..+||++++|++|++.+.|+++++.
T Consensus 151 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 151 PKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 99999999999999999999999999864 6899999999999999999999999999999999988764
No 81
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-48 Score=378.11 Aligned_cols=222 Identities=29% Similarity=0.448 Sum_probs=197.6
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc--HHH
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDR 367 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~--~~~ 367 (614)
++++++||+-.|++ .+||+++||++++|||++|+|+||||||||+|+|+|+.+|++|+|.++|+|+... .+.
T Consensus 2 ~mL~v~~l~~~YG~------~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r 75 (237)
T COG0410 2 PMLEVENLSAGYGK------IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHER 75 (237)
T ss_pred CceeEEeEeecccc------eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHH
Confidence 47999999999984 6799999999999999999999999999999999999999999999999999753 356
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhC
Q 007178 368 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 447 (614)
Q Consensus 368 ~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~ 447 (614)
.|..|+||||...+|+.|||+|||.+.+..+.. ++..+..++++.+.+--- ++.++++.++|||||||.++|||||+.
T Consensus 76 ~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~-~~~~~~~~e~v~~lFP~L-ker~~~~aG~LSGGEQQMLAiaRALm~ 153 (237)
T COG0410 76 ARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD-KEAQERDLEEVYELFPRL-KERRNQRAGTLSGGEQQMLAIARALMS 153 (237)
T ss_pred HhCCeEeCcccccchhhCcHHHHHhhhhhcccc-cccccccHHHHHHHChhH-HHHhcCcccCCChHHHHHHHHHHHHhc
Confidence 788999999999999999999999987654321 122222377777777532 257899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 448 NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 448 ~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
+|++|+|||||.||-|.-.+++.+.|++++ + |.||+++.++...|.+++||.++|.+|+++..|+.+++.+.
T Consensus 154 ~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 154 RPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred CCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 999999999999999999999999999975 4 78999999999999999999999999999999999998764
No 82
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=5.3e-48 Score=393.02 Aligned_cols=220 Identities=28% Similarity=0.421 Sum_probs=196.3
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc------
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD------ 364 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~------ 364 (614)
+++++|++++|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (250)
T PRK11264 3 AIEVKNLVKKFHG------QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76 (250)
T ss_pred cEEEeceEEEECC------eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccch
Confidence 5899999999973 4699999999999999999999999999999999999999999999999987531
Q ss_pred ---HHHhhcceEEEcCCCCCCCCCCHHHHHHHHhh-hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHH
Q 007178 365 ---MDRIYTSMGVCPQEDLLWETLTGREHLLFYGR-LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 440 (614)
Q Consensus 365 ---~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ 440 (614)
....++.+||+||++.+++.+|++||+.+... .++...++..+++.++++.+|+. ...++++++||||||||++
T Consensus 77 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~Gq~qrv~ 154 (250)
T PRK11264 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLA--GKETSYPRRLSGGQQQRVA 154 (250)
T ss_pred hhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc--chhhCChhhCChHHHHHHH
Confidence 23456789999999999999999999987533 23333444566788999999996 3678999999999999999
Q ss_pred HHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 441 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 441 ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
|||||+.+|+++||||||+|||+.+++.+++.|+++. +|+|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus 155 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 233 (250)
T PRK11264 155 IARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFA 233 (250)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999999864 58999999999999999999999999999999999988754
No 83
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=3.1e-48 Score=393.00 Aligned_cols=219 Identities=29% Similarity=0.465 Sum_probs=192.3
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc----HH
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MD 366 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~----~~ 366 (614)
+++++|+++.|++ ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ..
T Consensus 1 ~l~~~~l~~~~~~-----~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (243)
T TIGR02315 1 MLEVENLSKVYPN-----GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLR 75 (243)
T ss_pred CeEEEeeeeecCC-----CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHH
Confidence 4789999999962 24699999999999999999999999999999999999999999999999987532 12
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhh--------hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHH
Q 007178 367 RIYTSMGVCPQEDLLWETLTGREHLLFYGR--------LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 438 (614)
Q Consensus 367 ~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~--------~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqr 438 (614)
..++.+||+||++.+++.+|++||+.+... +.+...++.++++.++++.+++. +..++++.+||||||||
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qr 153 (243)
T TIGR02315 76 KLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLA--DKAYQRADQLSGGQQQR 153 (243)
T ss_pred HHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcH--hhhcCCcccCCHHHHHH
Confidence 356789999999999999999999976321 11112234456788999999996 37899999999999999
Q ss_pred HHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHH
Q 007178 439 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 516 (614)
Q Consensus 439 l~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l 516 (614)
++|||||+.+|+++||||||+|||+.+++.+++.|+++ + +|+|||++||+++++.++||++++|++|++++.|+++++
T Consensus 154 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 154 VAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 99999999999999999999999999999999999986 4 389999999999999999999999999999999998876
No 84
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-48 Score=406.23 Aligned_cols=234 Identities=22% Similarity=0.329 Sum_probs=203.8
Q ss_pred CeEEEEeEEEEcCCCCC----CCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc-
Q 007178 290 HAIISDNLRKIYPGRDG----NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD- 364 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~----~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~- 364 (614)
++|+++||+|.|+...+ ...+.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++...
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~ 83 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC
Confidence 47999999999974211 0125799999999999999999999999999999999999999999999999998642
Q ss_pred ---HHHhhcceEEEcCCC--CCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHH
Q 007178 365 ---MDRIYTSMGVCPQED--LLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 438 (614)
Q Consensus 365 ---~~~~~~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqr 438 (614)
....|++|||+||++ .+.+.+|+.+++....... +..+++.++++.++++.+||.+ ...++++++||||||||
T Consensus 84 ~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~p~~LSgGq~QR 162 (327)
T PRK11308 84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP-EHYDRYPHMFSGGQRQR 162 (327)
T ss_pred HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh-HHhcCCCccCCHHHHHH
Confidence 234567899999997 6899999999998765543 3455566778999999999963 46799999999999999
Q ss_pred HHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHH
Q 007178 439 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 516 (614)
Q Consensus 439 l~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~--~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l 516 (614)
++|||||+.+|++||+||||+|||+.++++++++|++++ .|.|||++|||++++..+||||++|.+|++++.|+.+++
T Consensus 163 v~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~ 242 (327)
T PRK11308 163 IAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQI 242 (327)
T ss_pred HHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999863 489999999999999999999999999999999999998
Q ss_pred HHhcCCcE
Q 007178 517 KARYGGSY 524 (614)
Q Consensus 517 ~~~~~~~~ 524 (614)
.+.....|
T Consensus 243 ~~~p~hpy 250 (327)
T PRK11308 243 FNNPRHPY 250 (327)
T ss_pred hcCCCCHH
Confidence 77544333
No 85
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-48 Score=399.09 Aligned_cols=222 Identities=24% Similarity=0.419 Sum_probs=198.2
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc-HHHh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDRI 368 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~-~~~~ 368 (614)
++++++|+++.|++. .+.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ....
T Consensus 4 ~~l~~~~l~~~~~~~----~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~ 79 (279)
T PRK13635 4 EIIRVEHISFRYPDA----ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDV 79 (279)
T ss_pred ceEEEEEEEEEeCCC----CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHH
Confidence 469999999999642 25699999999999999999999999999999999999999999999999998642 3445
Q ss_pred hcceEEEcCCC-CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhC
Q 007178 369 YTSMGVCPQED-LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 447 (614)
Q Consensus 369 ~~~ig~~~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~ 447 (614)
++.+||+||++ .++..+|+.||+.+.....+...++.+++++++++.+||. +..++++.+||||||||++|||||+.
T Consensus 80 ~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LS~G~~qrv~laral~~ 157 (279)
T PRK13635 80 RRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGME--DFLNREPHRLSGGQKQRVAIAGVLAL 157 (279)
T ss_pred hhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCCh--hhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 67899999997 3677789999998876555555556667899999999997 47899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 448 NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 448 ~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
+|+++||||||+|||+.+++.++++|+++. + |+|||++||++++++. |||+++|++|++++.|+++++..
T Consensus 158 ~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 158 QPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999999999864 4 8999999999999975 99999999999999999988754
No 86
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-48 Score=399.43 Aligned_cols=222 Identities=27% Similarity=0.430 Sum_probs=197.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC---cHH
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---DMD 366 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~---~~~ 366 (614)
++++++|++++|++ ++.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.. ...
T Consensus 4 ~~l~~~~l~~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~ 78 (283)
T PRK13636 4 YILKVEELNYNYSD-----GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLM 78 (283)
T ss_pred ceEEEEeEEEEeCC-----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHH
Confidence 37999999999963 2569999999999999999999999999999999999999999999999999842 234
Q ss_pred HhhcceEEEcCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 007178 367 RIYTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 445 (614)
Q Consensus 367 ~~~~~ig~~~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al 445 (614)
..++.+||+||++. .+...|++||+.+.....+.+.++..++++++++.+||. ++.++++.+||||||||++|||||
T Consensus 79 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LS~G~~qrl~laraL 156 (283)
T PRK13636 79 KLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIE--HLKDKPTHCLSFGQKKRVAIAGVL 156 (283)
T ss_pred HHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCCh--hhhhCCcccCCHHHHHHHHHHHHH
Confidence 56788999999973 233479999998865544555555667889999999996 478999999999999999999999
Q ss_pred hCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 446 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 446 ~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
+.+|+++||||||+|||+.+++.++++|+++. + |+|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 157 ~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 157 VMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999863 4 8999999999999999999999999999999999998754
No 87
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.9e-48 Score=387.48 Aligned_cols=219 Identities=24% Similarity=0.384 Sum_probs=191.4
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcH-H--
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM-D-- 366 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~-~-- 366 (614)
++++++|++|.|+++. ..+.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... .
T Consensus 4 ~~l~~~~l~~~~~~~~--~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~ 81 (233)
T PRK11629 4 ILLQCDNLCKRYQEGS--VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAK 81 (233)
T ss_pred ceEEEEeEEEEcCCCC--cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHH
Confidence 4699999999997421 0146999999999999999999999999999999999999999999999999986422 1
Q ss_pred -Hh-hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 007178 367 -RI-YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 444 (614)
Q Consensus 367 -~~-~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~a 444 (614)
.. ++.+||+||++.+++.+|++||+.+.....+...++.+++++++++.+|+. +..++++.+||||||||++||||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgG~~qrl~la~a 159 (233)
T PRK11629 82 AELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLE--HRANHRPSELSGGERQRVAIARA 159 (233)
T ss_pred HHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc--hhhhCChhhCCHHHHHHHHHHHH
Confidence 12 367999999999999999999999865544444455567889999999996 37789999999999999999999
Q ss_pred HhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCH
Q 007178 445 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 513 (614)
Q Consensus 445 l~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~ 513 (614)
++.+|+++||||||+|||+.+++.++++|+++ + +|+|||++||++++++. +||+++|++|++++.++.
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~-~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 160 LVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKR-MSRQLEMRDGRLTAELSL 229 (233)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh-hCEEEEEECCEEEEEecc
Confidence 99999999999999999999999999999986 3 58999999999999987 479999999999988764
No 88
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=5.6e-48 Score=386.06 Aligned_cols=212 Identities=24% Similarity=0.399 Sum_probs=189.1
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc----HH
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MD 366 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~----~~ 366 (614)
+++++|++|.|++ ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ..
T Consensus 1 ~l~~~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~ 75 (222)
T PRK10908 1 MIRFEHVSKAYLG-----GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVP 75 (222)
T ss_pred CEEEEeeEEEecC-----CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHH
Confidence 3789999999942 25699999999999999999999999999999999999999999999999988542 22
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHh
Q 007178 367 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 446 (614)
Q Consensus 367 ~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~ 446 (614)
..++.+||+||++.+++.+|++||+.+.....+...++..++++++++.+++. +..++++.+||||||||++|||||+
T Consensus 76 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~ 153 (222)
T PRK10908 76 FLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLL--DKAKNFPIQLSGGEQQRVGIARAVV 153 (222)
T ss_pred HHHhheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCh--hhhhCCchhCCHHHHHHHHHHHHHH
Confidence 35678999999999988999999999876555554455566788999999996 3678999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEE
Q 007178 447 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQC 509 (614)
Q Consensus 447 ~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~ 509 (614)
.+|+++||||||+|||+.+++.++++|++. ++|+|||++||+++++..+|||+++|++|+++.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 154 NKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999999999986 458999999999999999999999999999853
No 89
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.4e-48 Score=397.57 Aligned_cols=221 Identities=25% Similarity=0.421 Sum_probs=196.6
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhh
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 369 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~ 369 (614)
+++++|++|+|++ ++.+++|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. .....+
T Consensus 3 ~l~~~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 77 (277)
T PRK13652 3 LIETRDLCYSYSG-----SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVR 77 (277)
T ss_pred eEEEEEEEEEeCC-----CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHH
Confidence 5899999999963 2459999999999999999999999999999999999999999999999998854 334567
Q ss_pred cceEEEcCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCC
Q 007178 370 TSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 448 (614)
Q Consensus 370 ~~ig~~~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~ 448 (614)
+.+||+||++. .+...|++||+.+.....+...++.+++++++++.++|. +..++.+.+||||||||++|||||+.+
T Consensus 78 ~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~Gq~qrl~laraL~~~ 155 (277)
T PRK13652 78 KFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLE--ELRDRVPHHLSGGEKKRVAIAGVIAME 155 (277)
T ss_pred hheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCCh--hHhcCCcccCCHHHHHHHHHHHHHHcC
Confidence 78999999973 233579999998765544555555667889999999996 478999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 449 PKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 449 p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
|+++||||||+|||+.+++.+++++++++ + |+|||++||+++++.++|||+++|++|+++..|+++++.+
T Consensus 156 p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 156 PQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 99999999999999999999999999863 3 8999999999999999999999999999999999998864
No 90
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=4.5e-48 Score=384.28 Aligned_cols=209 Identities=26% Similarity=0.434 Sum_probs=187.4
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc----HHH
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MDR 367 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~----~~~ 367 (614)
++++|+++.|++ .+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ...
T Consensus 1 l~~~~l~~~~~~-----~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~ 75 (214)
T cd03292 1 IEFINVTKTYPN-----GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPY 75 (214)
T ss_pred CEEEEEEEEeCC-----CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHH
Confidence 468999999963 24699999999999999999999999999999999999999999999999988542 224
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhC
Q 007178 368 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 447 (614)
Q Consensus 368 ~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~ 447 (614)
.++.++|+||++.+++.+|++||+.+....++...++.+++++++++.+|+. +..++++.+||||||||++|||||+.
T Consensus 76 ~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~ 153 (214)
T cd03292 76 LRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLS--HKHRALPAELSGGEQQRVAIARAIVN 153 (214)
T ss_pred HHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH--HHhhCChhhcCHHHHHHHHHHHHHHc
Confidence 5678999999999999999999999876555544455567889999999996 37789999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCEE
Q 007178 448 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSL 507 (614)
Q Consensus 448 ~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~l 507 (614)
+|+++||||||+|||+.+++.+.+.|+++ ++|+|||++||+++++..+||++++|++|++
T Consensus 154 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 154 SPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999986 4689999999999999999999999999974
No 91
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.8e-48 Score=399.46 Aligned_cols=219 Identities=28% Similarity=0.419 Sum_probs=195.1
Q ss_pred EEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc-HHH----
Q 007178 293 ISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDR---- 367 (614)
Q Consensus 293 ~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~-~~~---- 367 (614)
.++|++|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ...
T Consensus 26 ~~~~~~~~~~~------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~ 99 (269)
T cd03294 26 SKEEILKKTGQ------TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELREL 99 (269)
T ss_pred hhhhhhhhcCC------ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhh
Confidence 45799999974 5799999999999999999999999999999999999999999999999987542 111
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhC
Q 007178 368 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 447 (614)
Q Consensus 368 ~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~ 447 (614)
.++++||+||++.+++.+|++||+.+.....+....+..++++++++.++|. +..++++.+||||||||++|||||+.
T Consensus 100 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~Gq~qrv~lAral~~ 177 (269)
T cd03294 100 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLE--GWEHKYPDELSGGMQQRVGLARALAV 177 (269)
T ss_pred hcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH--hHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 2357999999999999999999999876555544445567788999999996 47899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 448 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 448 ~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
+|+++||||||+|||+.+++.++++|+++ + +|+|||++||+++++..+||++++|++|++++.|+++++.+.
T Consensus 178 ~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 178 DPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999986 3 389999999999999999999999999999999999988653
No 92
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-48 Score=390.39 Aligned_cols=220 Identities=31% Similarity=0.543 Sum_probs=196.4
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc--HHHh
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDRI 368 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~--~~~~ 368 (614)
+++++|++|+|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ....
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (241)
T PRK10895 3 TLTAKNLAKAYKG------RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARA 76 (241)
T ss_pred eEEEeCcEEEeCC------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 6899999999973 5699999999999999999999999999999999999999999999999988542 2334
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhC
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 447 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~ 447 (614)
++.+||+||++.+++.+|++||+.+..... +...++.+++++++++.+++. +..++++.+||||||||++|||||+.
T Consensus 77 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~ 154 (241)
T PRK10895 77 RRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIE--HLRDSMGQSLSGGERRRVEIARALAA 154 (241)
T ss_pred HhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCH--HHhhcchhhCCHHHHHHHHHHHHHhc
Confidence 678999999999999999999998765443 233344566789999999996 36789999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 448 NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 448 ~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
+|+++||||||+|||+.+++.+++.+++++ +|+|||++||+++++..+|||+++|++|++++.|+++++..
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 155 NPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 999999999999999999999999998864 68999999999999999999999999999999999987743
No 93
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-47 Score=392.87 Aligned_cols=223 Identities=26% Similarity=0.457 Sum_probs=196.9
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CccEEEEcCeeCCCc
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRTD 364 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~sG~i~i~G~~i~~~ 364 (614)
++++++|++++|++ +.+++|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|+++...
T Consensus 11 ~~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~ 84 (258)
T PRK14268 11 PQIKVENLNLWYGE------KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEP 84 (258)
T ss_pred eeEEEeeeEEEeCC------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccc
Confidence 47999999999973 5699999999999999999999999999999999999985 899999999987532
Q ss_pred ---HHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHHH
Q 007178 365 ---MDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 439 (614)
Q Consensus 365 ---~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqrl 439 (614)
....++.+||+||++.+++ +|++||+.+.....+.+.++.+++++++++.+++.+ .+..++++.+||||||||+
T Consensus 85 ~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv 163 (258)
T PRK14268 85 DVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRL 163 (258)
T ss_pred cchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHH
Confidence 2345678999999999888 899999998765555444445567889999999841 1256889999999999999
Q ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 440 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 440 ~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
+|||||+.+|+++||||||+|||+.+++.++++|+++++|+|||++||+++++..+|||+++|++|++++.|+++++.+.
T Consensus 164 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 243 (258)
T PRK14268 164 CIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHN 243 (258)
T ss_pred HHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999999876689999999999999999999999999999999999988643
No 94
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-48 Score=397.12 Aligned_cols=220 Identities=25% Similarity=0.394 Sum_probs=195.7
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc--HHHh
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDRI 368 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~--~~~~ 368 (614)
+++++|++|.|++ ++.+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|.++... ....
T Consensus 1 ml~~~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 75 (274)
T PRK13644 1 MIRLENVSYSYPD-----GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGI 75 (274)
T ss_pred CEEEEEEEEEcCC-----CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHH
Confidence 4789999999963 24699999999999999999999999999999999999999999999999988542 3455
Q ss_pred hcceEEEcCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhC
Q 007178 369 YTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 447 (614)
Q Consensus 369 ~~~ig~~~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~ 447 (614)
++.+||+||++. .+..+|++||+.+.....+...++.+++++++++.+||. ...++++.+||||||||++||+||+.
T Consensus 76 ~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrv~laral~~ 153 (274)
T PRK13644 76 RKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLE--KYRHRSPKTLSGGQGQCVALAGILTM 153 (274)
T ss_pred HhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH--HHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 678999999975 356689999998876555555556667889999999996 47899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 448 NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 448 ~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
+|+++||||||+|||+.+++.+++.+++++ +|+|||++||+++++. .|||+++|++|++++.|+++++..
T Consensus 154 ~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 154 EPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH-DADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh-hCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999999999864 5999999999999995 599999999999999999988754
No 95
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-47 Score=391.18 Aligned_cols=223 Identities=26% Similarity=0.414 Sum_probs=196.4
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CccEEEEcCeeCCC-
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT- 363 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~sG~i~i~G~~i~~- 363 (614)
.+++++|++|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++..
T Consensus 3 ~~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~ 76 (253)
T PRK14267 3 FAIETVNLRVYYGS------NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSP 76 (253)
T ss_pred ceEEEEeEEEEeCC------eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccc
Confidence 36899999999973 4699999999999999999999999999999999999987 49999999998852
Q ss_pred --cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC--CchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHH
Q 007178 364 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL--KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 437 (614)
Q Consensus 364 --~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~--~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kq 437 (614)
.....++++||+||++.+++.+|+.||+.+....++. ..++..++++++++.+++.+ ....++++.+|||||||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 156 (253)
T PRK14267 77 DVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQ 156 (253)
T ss_pred ccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHH
Confidence 2335667899999999999999999999886544432 23344567889999999842 12468899999999999
Q ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHH
Q 007178 438 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 517 (614)
Q Consensus 438 rl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 517 (614)
|++|||||+.+|+++||||||+|||+.+++.+++.|++..+++|||++||+++++..+|||+++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 157 RLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998766799999999999999999999999999999999998876
Q ss_pred H
Q 007178 518 A 518 (614)
Q Consensus 518 ~ 518 (614)
+
T Consensus 237 ~ 237 (253)
T PRK14267 237 E 237 (253)
T ss_pred h
Confidence 4
No 96
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-47 Score=389.92 Aligned_cols=222 Identities=25% Similarity=0.398 Sum_probs=196.5
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CccEEEEcCeeCCC-c
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT-D 364 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~sG~i~i~G~~i~~-~ 364 (614)
+++++|++|+|++ +.+++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 76 (250)
T PRK14247 3 KIEIRDLKVSFGQ------VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD 76 (250)
T ss_pred eEEEEeeEEEECC------eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCC
Confidence 5899999999973 4699999999999999999999999999999999999974 79999999998854 3
Q ss_pred HHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC--CchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHHHH
Q 007178 365 MDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL--KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRLS 440 (614)
Q Consensus 365 ~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~--~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqrl~ 440 (614)
....++.+||+||++.+++.+|++||+.+.....+. ..++.+++++++++.++|.+ ....++++.+||||||||++
T Consensus 77 ~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ 156 (250)
T PRK14247 77 VIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLC 156 (250)
T ss_pred HHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHH
Confidence 345677899999999888899999999886544332 23445567889999999852 02468899999999999999
Q ss_pred HHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 441 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 441 ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
+||||+.+|++++|||||+|||+.+++.+++.|++.++|+|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 157 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14247 157 IARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFT 234 (250)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHHc
Confidence 999999999999999999999999999999999987668999999999999999999999999999999999988754
No 97
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-47 Score=390.55 Aligned_cols=222 Identities=25% Similarity=0.411 Sum_probs=195.0
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCccEEEEcCeeCCC-
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT- 363 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-----p~sG~i~i~G~~i~~- 363 (614)
+.++++|++++|++ +.+++|+||++++||+++|+||||||||||+|+|+|+.+ |++|+|.++|+++..
T Consensus 5 ~~l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 78 (253)
T PRK14242 5 PKMEARGLSFFYGD------FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDP 78 (253)
T ss_pred cEEEEeeeEEEECC------eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcccc
Confidence 57999999999973 469999999999999999999999999999999999974 689999999998853
Q ss_pred --cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 007178 364 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 438 (614)
Q Consensus 364 --~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqr 438 (614)
.....++.+||+||++.+++ .|++||+.+....++.. .+..+++++++++.+++.+ ....++++.+||||||||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 157 (253)
T PRK14242 79 HVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQR 157 (253)
T ss_pred ccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHH
Confidence 23355778999999999988 49999998865544432 2344677889999999852 124688899999999999
Q ss_pred HHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 439 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 439 l~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
++|||||+.+|+++||||||+|||+.+++.++++|+++++++|||++||+++++.++|||+++|++|++++.|+++++.+
T Consensus 158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 237 (253)
T PRK14242 158 LCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFT 237 (253)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999999999999999999988668999999999999999999999999999999999988754
No 98
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-47 Score=395.72 Aligned_cols=220 Identities=23% Similarity=0.379 Sum_probs=194.6
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC---cHHH
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---DMDR 367 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~---~~~~ 367 (614)
+++++|++++|++ +.+++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ....
T Consensus 1 ml~~~~l~~~~~~------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 74 (271)
T PRK13638 1 MLATSDLWFRYQD------EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLA 74 (271)
T ss_pred CeEEEEEEEEcCC------cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHH
Confidence 4789999999973 469999999999999999999999999999999999999999999999999842 2335
Q ss_pred hhcceEEEcCCCCC-CCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHh
Q 007178 368 IYTSMGVCPQEDLL-WETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 446 (614)
Q Consensus 368 ~~~~ig~~~Q~~~l-~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~ 446 (614)
.++.+||+||++.+ +...|+.||+.+.....+...++..++++++++.+|+. ++.++++.+||||||||++|||||+
T Consensus 75 ~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrl~laraL~ 152 (271)
T PRK13638 75 LRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQ--HFRHQPIQCLSHGQKKRVAIAGALV 152 (271)
T ss_pred HHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH--hHhcCCchhCCHHHHHHHHHHHHHH
Confidence 56789999999753 33468999998865555544455567788999999996 4789999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 447 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 447 ~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
.+|+++||||||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 153 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (271)
T PRK13638 153 LQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA 225 (271)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999864 68999999999999999999999999999999999988754
No 99
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=2e-47 Score=390.64 Aligned_cols=222 Identities=23% Similarity=0.399 Sum_probs=196.7
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC------
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT------ 363 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~------ 363 (614)
..++++|+++.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 4 ~~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~ 77 (257)
T PRK10619 4 NKLNVIDLHKRYGE------HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDG 77 (257)
T ss_pred ccEEEeeeEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccc
Confidence 46999999999973 569999999999999999999999999999999999999999999999998742
Q ss_pred --------cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHh-hhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChh
Q 007178 364 --------DMDRIYTSMGVCPQEDLLWETLTGREHLLFYG-RLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG 434 (614)
Q Consensus 364 --------~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG 434 (614)
.....++.+||+||++.+++.+|++||+.+.. ...+...++.++++.++++.+|+.+ ...++++.+||||
T Consensus 78 ~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~~LS~G 156 (257)
T PRK10619 78 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDE-RAQGKYPVHLSGG 156 (257)
T ss_pred ccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCCh-hhhhCCcccCCHH
Confidence 12345678999999999999999999998643 2333344455678899999999963 2248899999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCH
Q 007178 435 MKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 513 (614)
Q Consensus 435 ~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~ 513 (614)
||||++|||||+.+|+++||||||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++|++|+++..|++
T Consensus 157 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 236 (257)
T PRK10619 157 QQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAP 236 (257)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999874 599999999999999999999999999999999999
Q ss_pred HHHHH
Q 007178 514 KELKA 518 (614)
Q Consensus 514 ~~l~~ 518 (614)
+++.+
T Consensus 237 ~~~~~ 241 (257)
T PRK10619 237 EQLFG 241 (257)
T ss_pred HHhhh
Confidence 88754
No 100
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=4.8e-48 Score=381.90 Aligned_cols=202 Identities=29% Similarity=0.478 Sum_probs=178.9
Q ss_pred EEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceE
Q 007178 294 SDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMG 373 (614)
Q Consensus 294 ~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig 373 (614)
++|++|+|++ .+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...++.+|
T Consensus 2 ~~~l~~~~~~-----~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~--~~~~~~i~ 74 (205)
T cd03226 2 IENISFSYKK-----GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA--KERRKSIG 74 (205)
T ss_pred cccEEEEeCC-----cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh--HHhhcceE
Confidence 6899999963 1469999999999999999999999999999999999999999999999998753 34567899
Q ss_pred EEcCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEE
Q 007178 374 VCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVV 452 (614)
Q Consensus 374 ~~~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vl 452 (614)
|+||++. .+..+|++||+.++....+ ..+++++++++.+++. +..++++.+||||||||++|||||+.+|+++
T Consensus 75 ~~~q~~~~~~~~~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~~p~ll 148 (205)
T cd03226 75 YVMQDVDYQLFTDSVREELLLGLKELD----AGNEQAETVLKDLDLY--ALKERHPLSLSGGQKQRLAIAAALLSGKDLL 148 (205)
T ss_pred EEecChhhhhhhccHHHHHhhhhhhcC----ccHHHHHHHHHHcCCc--hhcCCCchhCCHHHHHHHHHHHHHHhCCCEE
Confidence 9999974 2345799999987654332 1235788999999997 4789999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEE
Q 007178 453 YMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQ 508 (614)
Q Consensus 453 lLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~l~ 508 (614)
||||||+|||+.+++.+++.|++. ++|+|||++||++++++.+|||+++|++|+++
T Consensus 149 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 149 IFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 999999999999999999999986 56899999999999999999999999999974
No 101
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=6.2e-48 Score=382.59 Aligned_cols=207 Identities=32% Similarity=0.532 Sum_probs=182.8
Q ss_pred EEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhhcce
Q 007178 294 SDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSM 372 (614)
Q Consensus 294 ~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~~~i 372 (614)
++|++|+|++. ++.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.. .....++.+
T Consensus 2 ~~~l~~~~~~~----~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 77 (211)
T cd03225 2 LKNLSFSYPDG----ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKV 77 (211)
T ss_pred ceeEEEecCCC----CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhc
Confidence 68999999741 2569999999999999999999999999999999999999999999999998854 234566789
Q ss_pred EEEcCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCE
Q 007178 373 GVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 451 (614)
Q Consensus 373 g~~~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~v 451 (614)
||+||++. .++.+|++||+.+.....+...++.+++++++++.+++. +..++++.+||||||||++|||||+.+|++
T Consensus 78 ~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~laral~~~p~l 155 (211)
T cd03225 78 GLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLE--GLRDRSPFTLSGGQKQRVAIAGVLAMDPDI 155 (211)
T ss_pred eEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcH--hhhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999975 356789999998865544444445566788999999996 377999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCE
Q 007178 452 VYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGS 506 (614)
Q Consensus 452 llLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~ 506 (614)
+||||||+|||+.+++.+++.|++.+ +|+|||++||++++++.+|||+++|++|+
T Consensus 156 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 156 LLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999864 58999999999999999999999999985
No 102
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-47 Score=396.60 Aligned_cols=227 Identities=30% Similarity=0.453 Sum_probs=198.9
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc--HH
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MD 366 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~--~~ 366 (614)
.++++++|++|+|++..+..++.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ..
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~ 81 (280)
T PRK13633 2 NEMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLW 81 (280)
T ss_pred CceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHH
Confidence 3579999999999742111125699999999999999999999999999999999999999999999999988542 24
Q ss_pred HhhcceEEEcCCCC--CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 007178 367 RIYTSMGVCPQEDL--LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 444 (614)
Q Consensus 367 ~~~~~ig~~~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~a 444 (614)
..++.+||+||++. ++ ..|+.||+.+.....+.+..+.+++++++++.+||. ++.++++.+||||||||++||+|
T Consensus 82 ~~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LS~G~~qrv~lara 158 (280)
T PRK13633 82 DIRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMY--EYRRHAPHLLSGGQKQRVAIAGI 158 (280)
T ss_pred HHhhheEEEecChhhhhc-cccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCH--hHhhCCcccCCHHHHHHHHHHHH
Confidence 56788999999974 44 469999999876555555556677899999999996 47899999999999999999999
Q ss_pred HhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 445 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 445 l~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
|+.+|+++||||||+|||+.+++.+++.|+++ + +|+|||++||+++++.. |||+++|++|++++.|+++++...
T Consensus 159 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~~~~~ 234 (280)
T PRK13633 159 LAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEIFKE 234 (280)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999986 3 48999999999999986 999999999999999999998654
No 103
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-47 Score=390.23 Aligned_cols=223 Identities=26% Similarity=0.438 Sum_probs=195.8
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CccEEEEcCeeCCC-
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT- 363 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~sG~i~i~G~~i~~- 363 (614)
.+++++|++++|++ +.+++|+||++++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++..
T Consensus 6 ~~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 79 (254)
T PRK14273 6 AIIETENLNLFYTD------FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSN 79 (254)
T ss_pred ceEEEeeeEEEeCC------ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccc
Confidence 47999999999973 4699999999999999999999999999999999999997 59999999998742
Q ss_pred --cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 007178 364 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 438 (614)
Q Consensus 364 --~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqr 438 (614)
.....++.+||+||++.+++ +|++||+.+.....+. ...+.+++++++++.+++.+ .+..++++.+||||||||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qr 158 (254)
T PRK14273 80 NFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQR 158 (254)
T ss_pred cccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHH
Confidence 23456778999999998885 8999999886544432 23345677888999998731 125688999999999999
Q ss_pred HHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 439 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 439 l~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
++|||||+.+|+++||||||+|||+.+++.++++|+++++++|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 238 (254)
T PRK14273 159 LCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFF 238 (254)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999998778999999999999999999999999999999999998865
Q ss_pred h
Q 007178 519 R 519 (614)
Q Consensus 519 ~ 519 (614)
.
T Consensus 239 ~ 239 (254)
T PRK14273 239 N 239 (254)
T ss_pred C
Confidence 4
No 104
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-47 Score=390.67 Aligned_cols=220 Identities=27% Similarity=0.416 Sum_probs=195.0
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhh
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 369 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~ 369 (614)
+++++|++|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .....+
T Consensus 2 ~l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~ 75 (258)
T PRK13548 2 MLEARNLSVRLGG------RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELA 75 (258)
T ss_pred eEEEEeEEEEeCC------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhh
Confidence 5889999999973 569999999999999999999999999999999999999999999999998754 233456
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHh---
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI--- 446 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~--- 446 (614)
+.+||+||++.+++.+|++||+.+.....+...++.+++++++++.+++. +..++.+.+||||||||++||+||+
T Consensus 76 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGe~qrv~la~al~~~~ 153 (258)
T PRK13548 76 RRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLA--HLAGRDYPQLSGGEQQRVQLARVLAQLW 153 (258)
T ss_pred hheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCH--hHhcCCcccCCHHHHHHHHHHHHHhccc
Confidence 78999999998888899999998864433333344456788999999996 3789999999999999999999999
Q ss_pred ---CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 447 ---GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 447 ---~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~--~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
.+|+++||||||+|||+.+++.+.+.|+++. +|+|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus 154 ~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 154 EPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred ccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence 5999999999999999999999999999863 58999999999999999999999999999999999887643
No 105
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-47 Score=387.06 Aligned_cols=219 Identities=25% Similarity=0.414 Sum_probs=195.0
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-------
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT------- 363 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~------- 363 (614)
+++++|+++.|++ +.+++|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 75 (242)
T PRK11124 2 SIQLNGINCFYGA------HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDK 75 (242)
T ss_pred EEEEEeeEEEECC------eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchh
Confidence 5889999999973 469999999999999999999999999999999999999999999999998731
Q ss_pred cHHHhhcceEEEcCCCCCCCCCCHHHHHHH-HhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHH
Q 007178 364 DMDRIYTSMGVCPQEDLLWETLTGREHLLF-YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 442 (614)
Q Consensus 364 ~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~-~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia 442 (614)
.....++++||+||++.+++.+|++||+.+ .....+...++..+++.++++.+|+. ...++++.+||||||||++||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrv~la 153 (242)
T PRK11124 76 AIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLK--PYADRFPLHLSGGQQQRVAIA 153 (242)
T ss_pred hHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh--hhhhCChhhCCHHHHHHHHHH
Confidence 123456789999999999999999999975 33334444445567789999999996 478999999999999999999
Q ss_pred HHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHH
Q 007178 443 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 517 (614)
Q Consensus 443 ~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 517 (614)
|||+.+|+++||||||+|||+.+++.+++.|++++ +|+|||++||+++++.++|||+++|++|+++..|+++++.
T Consensus 154 ral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 229 (242)
T PRK11124 154 RALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT 229 (242)
T ss_pred HHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhc
Confidence 99999999999999999999999999999999864 5899999999999999999999999999999999987653
No 106
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-47 Score=394.75 Aligned_cols=225 Identities=27% Similarity=0.405 Sum_probs=195.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-----cH
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-----DM 365 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-----~~ 365 (614)
.++++|++|.|++... ..+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ..
T Consensus 2 ~l~~~~l~~~~~~~~~-~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (280)
T PRK13649 2 GINLQNVSYTYQAGTP-FEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDI 80 (280)
T ss_pred eEEEEEEEEEcCCCCc-cccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCH
Confidence 4889999999974210 01469999999999999999999999999999999999999999999999998753 23
Q ss_pred HHhhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 007178 366 DRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 443 (614)
Q Consensus 366 ~~~~~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~ 443 (614)
...++.|||+||++ .+++ .|++||+.+.....+...++.+++++++++.++|.+ ...++++.+||||||||++||+
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgG~~qrv~la~ 158 (280)
T PRK13649 81 KQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISE-SLFEKNPFELSGGQMRRVAIAG 158 (280)
T ss_pred HHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh-hhhhCCcccCCHHHHHHHHHHH
Confidence 45677899999996 4565 699999988655444444555677889999999962 3578999999999999999999
Q ss_pred HHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 444 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 444 al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
||+.+|+++||||||+|||+.+++.+++.|++++ +|+|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 159 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 159 ILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999864 58999999999999999999999999999999999988754
No 107
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=1.6e-47 Score=383.84 Aligned_cols=218 Identities=23% Similarity=0.382 Sum_probs=185.8
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcH----H
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM----D 366 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~----~ 366 (614)
+++++|++++|+++. ....+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... .
T Consensus 1 ~l~~~~v~~~~~~~~--~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (228)
T cd03257 1 LLEVKNLSVSFPTGG--GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRK 78 (228)
T ss_pred CeEEEeeeEeccCCC--cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHH
Confidence 378999999997421 0126999999999999999999999999999999999999999999999999886422 3
Q ss_pred HhhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCc-hhHHHH-HHHHHHHcCCCCCCcccccCCCCChhHHHHHHHH
Q 007178 367 RIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKG-PALTQA-VEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 442 (614)
Q Consensus 367 ~~~~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~~~~~-~~~~~~-~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia 442 (614)
..++.+||+||++ .+++.+|++||+.+.....+... ++..++ ++++++.+++.. ...++++.+||||||||++||
T Consensus 79 ~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LS~G~~qrv~la 157 (228)
T cd03257 79 IRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPE-EVLNRYPHELSGGQRQRVAIA 157 (228)
T ss_pred HhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCCh-hHhhCCchhcCHHHHHHHHHH
Confidence 4567899999998 56778999999987654433222 222222 358899999952 367899999999999999999
Q ss_pred HHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEc
Q 007178 443 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 511 (614)
Q Consensus 443 ~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g 511 (614)
|||+.+|+++||||||+|||+.+++.+++.|++. ++ |+|||++||+++++..+|||+++|++|++++.|
T Consensus 158 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 158 RALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 9999999999999999999999999999999986 34 899999999999999999999999999998764
No 108
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=1.3e-47 Score=380.74 Aligned_cols=208 Identities=28% Similarity=0.466 Sum_probs=186.0
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC---cHHHh
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---DMDRI 368 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~---~~~~~ 368 (614)
++++|+++.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.. .....
T Consensus 1 l~~~~l~~~~~~------~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (213)
T cd03262 1 IEIKNLHKSFGD------FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINEL 74 (213)
T ss_pred CEEEEEEEEECC------eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHH
Confidence 468999999973 469999999999999999999999999999999999999999999999998843 23445
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhh-hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhC
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGR-LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 447 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~ 447 (614)
++.+||+||++.+++.+|++||+.+... .++...++.+++++++++.+|+. +..++++.+||||||||+++|+||+.
T Consensus 75 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~ 152 (213)
T cd03262 75 RQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLA--DKADAYPAQLSGGQQQRVAIARALAM 152 (213)
T ss_pred HhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCH--hHhhhCccccCHHHHHHHHHHHHHhc
Confidence 6889999999999999999999988643 33444445566788999999996 37899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCEE
Q 007178 448 NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSL 507 (614)
Q Consensus 448 ~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~l 507 (614)
+|+++||||||+|||+.+++.+++.|++++ +|+|||++||+++++..+||++++|++|++
T Consensus 153 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 153 NPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999864 589999999999999999999999999974
No 109
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-47 Score=403.05 Aligned_cols=232 Identities=19% Similarity=0.281 Sum_probs=199.5
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC----CCccEEEEcCeeCCCc-H
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR----TTSGTAYVQGLDIRTD-M 365 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~----p~sG~i~i~G~~i~~~-~ 365 (614)
+++++||++.|++..+ .+.||+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|+++... .
T Consensus 3 ~L~v~~l~~~~~~~~~--~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~ 80 (326)
T PRK11022 3 LLNVDKLSVHFGDESA--PFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE 80 (326)
T ss_pred eEEEeCeEEEECCCCc--cEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCH
Confidence 5899999999975311 2569999999999999999999999999999999999997 4899999999998642 1
Q ss_pred H---Hh-hcceEEEcCCC--CCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCC-CCcccccCCCCChhHHH
Q 007178 366 D---RI-YTSMGVCPQED--LLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFH-GGVADKQAGKYSGGMKR 437 (614)
Q Consensus 366 ~---~~-~~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~~~LSgG~kq 437 (614)
+ +. ++.|||+||++ .++|.+|+.+++....... +...++.++++.++++.+||.+ ....++++++|||||||
T Consensus 81 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~Q 160 (326)
T PRK11022 81 KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ 160 (326)
T ss_pred HHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHH
Confidence 1 22 24799999997 5889999999887655433 3445566778999999999963 12568899999999999
Q ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHH
Q 007178 438 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 515 (614)
Q Consensus 438 rl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~--~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~ 515 (614)
|++|||||+.+|++||+||||+|||+.++++++++|++++ .|.|+|++|||++++.++||||++|.+|++++.|++++
T Consensus 161 Rv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~ 240 (326)
T PRK11022 161 RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHD 240 (326)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999863 48999999999999999999999999999999999999
Q ss_pred HHHhcCCcE
Q 007178 516 LKARYGGSY 524 (614)
Q Consensus 516 l~~~~~~~~ 524 (614)
+.++..+.|
T Consensus 241 ~~~~p~hpy 249 (326)
T PRK11022 241 IFRAPRHPY 249 (326)
T ss_pred HhhCCCChH
Confidence 977654444
No 110
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-47 Score=393.00 Aligned_cols=220 Identities=29% Similarity=0.504 Sum_probs=194.2
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC---cHHH
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---DMDR 367 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~---~~~~ 367 (614)
+++++|+++.|++ ++.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++.. ....
T Consensus 1 ~l~~~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (275)
T PRK13639 1 ILETRDLKYSYPD-----GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLE 75 (275)
T ss_pred CEEEEEEEEEeCC-----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHH
Confidence 4789999999963 2469999999999999999999999999999999999999999999999998842 2234
Q ss_pred hhcceEEEcCCCC--CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 007178 368 IYTSMGVCPQEDL--LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 445 (614)
Q Consensus 368 ~~~~ig~~~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al 445 (614)
.++.|||+||++. ++ .+|++||+.+.....+...++.++++.++++.++|. ++.++++.+||||||||++|||||
T Consensus 76 ~~~~i~~v~q~~~~~~~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~LS~Gq~qrv~laral 152 (275)
T PRK13639 76 VRKTVGIVFQNPDDQLF-APTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGME--GFENKPPHHLSGGQKKRVAIAGIL 152 (275)
T ss_pred HHhheEEEeeChhhhhc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc--hhhcCChhhCCHHHHHHHHHHHHH
Confidence 5778999999963 45 469999998754333444445567788999999996 488999999999999999999999
Q ss_pred hCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 446 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 446 ~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
+.+|+++||||||+|||+.+++.+++.|++++ +|+|||++||+++++.++|||+++|++|++++.|+++++..
T Consensus 153 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 153 AMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999864 58999999999999999999999999999999999998754
No 111
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-47 Score=390.35 Aligned_cols=212 Identities=26% Similarity=0.399 Sum_probs=190.6
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhc
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 370 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~ 370 (614)
+++++|+++.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ++
T Consensus 1 ml~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----~~ 70 (255)
T PRK11248 1 MLQISHLYADYGG------KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP----GA 70 (255)
T ss_pred CEEEEEEEEEeCC------eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC----CC
Confidence 4789999999973 4699999999999999999999999999999999999999999999999987531 24
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCC
Q 007178 371 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 450 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~ 450 (614)
.+||+||++.+++.+|++||+.+.....+....+..+++.++++.+|+. +..++++.+||||||||+++||||+.+|+
T Consensus 71 ~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgGq~qrl~laral~~~p~ 148 (255)
T PRK11248 71 ERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLE--GAEKRYIWQLSGGQRQRVGIARALAANPQ 148 (255)
T ss_pred cEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh--hHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 5899999999999999999998865555544455567889999999996 37789999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHhhCCEEEEEe--CCEEEEEcCHH
Q 007178 451 VVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFV--DGSLQCIGNPK 514 (614)
Q Consensus 451 vllLDEPtsgLD~~~~~~i~~~l~~~-~-~g~tIil~TH~~~e~~~l~dri~il~--~G~l~~~g~~~ 514 (614)
++||||||+|||+.+++.++++|+++ + +|+|||++||+++++..+|||+++|+ +|+++..++.+
T Consensus 149 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 149 LLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 99999999999999999999999986 4 48999999999999999999999999 59999987754
No 112
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-47 Score=388.88 Aligned_cols=221 Identities=26% Similarity=0.424 Sum_probs=193.3
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc-H-HH
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-M-DR 367 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~-~-~~ 367 (614)
.+++++|++|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... . ..
T Consensus 4 ~~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 77 (255)
T PRK11300 4 PLLSVSGLMMRFGG------LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQI 77 (255)
T ss_pred ceEEEeeEEEEECC------EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHH
Confidence 36999999999973 5799999999999999999999999999999999999999999999999988642 2 22
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhh-------cCC------C--chhHHHHHHHHHHHcCCCCCCcccccCCCCC
Q 007178 368 IYTSMGVCPQEDLLWETLTGREHLLFYGRL-------KNL------K--GPALTQAVEESLKSVNLFHGGVADKQAGKYS 432 (614)
Q Consensus 368 ~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~-------~~~------~--~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LS 432 (614)
.+..++|+||++.+++.+|++||+.+.... .+. . ..+..++++++++.+|+. +..++++.+||
T Consensus 78 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS 155 (255)
T PRK11300 78 ARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLL--EHANRQAGNLA 155 (255)
T ss_pred HhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChh--hhhhCChhhCC
Confidence 345699999999999999999999875321 010 0 112345678899999996 47899999999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEE
Q 007178 433 GGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCI 510 (614)
Q Consensus 433 gG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~ 510 (614)
||||||++||+||+.+|+++||||||+|||+.+++.++++|.++ ++ |+|||++||+++++..+|||+++|++|+++..
T Consensus 156 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~ 235 (255)
T PRK11300 156 YGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLAN 235 (255)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEec
Confidence 99999999999999999999999999999999999999999986 34 89999999999999999999999999999999
Q ss_pred cCHHHHHH
Q 007178 511 GNPKELKA 518 (614)
Q Consensus 511 g~~~~l~~ 518 (614)
|+++++.+
T Consensus 236 ~~~~~~~~ 243 (255)
T PRK11300 236 GTPEEIRN 243 (255)
T ss_pred CCHHHHhh
Confidence 99887643
No 113
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=2.4e-47 Score=380.98 Aligned_cols=212 Identities=24% Similarity=0.393 Sum_probs=184.9
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc-HH---H
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MD---R 367 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~-~~---~ 367 (614)
++++|+++.|++.. ..+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .. .
T Consensus 2 l~~~~v~~~~~~~~--~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (221)
T TIGR02211 2 LKCENLGKRYQEGK--LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAK 79 (221)
T ss_pred EEEEeeeEEccCCC--cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHH
Confidence 78999999996421 124699999999999999999999999999999999999999999999999987542 11 2
Q ss_pred hh-cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHh
Q 007178 368 IY-TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 446 (614)
Q Consensus 368 ~~-~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~ 446 (614)
.+ +.+||+||++.+++.+|++||+.+....++....+..+++.++++.+|+. +..++++.+||||||||++|||||+
T Consensus 80 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~ 157 (221)
T TIGR02211 80 LRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLE--HRINHRPSELSGGERQRVAIARALV 157 (221)
T ss_pred HHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh--hhhhCChhhCCHHHHHHHHHHHHHh
Confidence 23 67999999999999999999998865444433344556788999999996 3789999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEE
Q 007178 447 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQ 508 (614)
Q Consensus 447 ~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~ 508 (614)
.+|+++||||||+|||+.+++.++++|+++ + .|+|||++||++++++. ||++++|++|+++
T Consensus 158 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~i~ 220 (221)
T TIGR02211 158 NQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDGQLF 220 (221)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence 999999999999999999999999999986 3 48999999999999975 8999999999975
No 114
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-47 Score=385.30 Aligned_cols=219 Identities=25% Similarity=0.402 Sum_probs=192.8
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcH--HH
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM--DR 367 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~--~~ 367 (614)
.+++++|++|+|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ..
T Consensus 4 ~~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~ 77 (237)
T PRK11614 4 VMLSFDKVSAHYGK------IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKI 77 (237)
T ss_pred cEEEEEeEEEeeCC------ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHH
Confidence 36999999999963 56999999999999999999999999999999999999999999999999875422 23
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHc-CCCCCCcccccCCCCChhHHHHHHHHHHHh
Q 007178 368 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSV-NLFHGGVADKQAGKYSGGMKRRLSVAISLI 446 (614)
Q Consensus 368 ~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-~L~~~~~~~~~~~~LSgG~kqrl~ia~al~ 446 (614)
.++.+||+||++.+++.+|++||+.+..... ..++..++++++++.+ ++. +..++++.+||||||||++|||||+
T Consensus 78 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~l~--~~~~~~~~~LS~G~~qrl~la~al~ 153 (237)
T PRK11614 78 MREAVAIVPEGRRVFSRMTVEENLAMGGFFA--ERDQFQERIKWVYELFPRLH--ERRIQRAGTMSGGEQQMLAIGRALM 153 (237)
T ss_pred HHhCEEEeccCcccCCCCcHHHHHHHhhhcc--ChhHHHHHHHHHHHHHHHHH--HHHhCchhhCCHHHHHHHHHHHHHH
Confidence 5678999999999999999999998753222 2233445677788888 475 3678899999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 447 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 447 ~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
.+|+++||||||+|||+.+++.+++.|+++ ++|+|||++||+++++.++|||+++|++|+++..|+++++..
T Consensus 154 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 154 SQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred hCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 999999999999999999999999999986 469999999999999999999999999999999999988753
No 115
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-47 Score=392.03 Aligned_cols=222 Identities=27% Similarity=0.468 Sum_probs=196.3
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 368 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~ 368 (614)
.+++++|++|.|++. ++.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. .....
T Consensus 6 ~~l~~~nl~~~~~~~----~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~ 81 (271)
T PRK13632 6 VMIKVENVSFSYPNS----ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEI 81 (271)
T ss_pred eEEEEEeEEEEcCCC----CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHH
Confidence 479999999999631 3569999999999999999999999999999999999999999999999999864 33456
Q ss_pred hcceEEEcCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhC
Q 007178 369 YTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 447 (614)
Q Consensus 369 ~~~ig~~~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~ 447 (614)
++.+||+||++. .++.+|++||+.+.....+...++.+++++++++.++|. +..++++.+||||||||++|||||+.
T Consensus 82 ~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~laral~~ 159 (271)
T PRK13632 82 RKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGME--DYLDKEPQNLSGGQKQRVAIASVLAL 159 (271)
T ss_pred hcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCH--HHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 788999999974 677789999998865544444455566789999999996 47899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 448 NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 448 ~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
+|+++||||||+|||+.+++.++++|++++ + ++|||++||+++++. .|||+++|++|++++.|+++++..
T Consensus 160 ~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 231 (271)
T PRK13632 160 NPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQGKPKEILN 231 (271)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999864 4 599999999999996 799999999999999999887643
No 116
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-47 Score=387.99 Aligned_cols=223 Identities=24% Similarity=0.389 Sum_probs=196.7
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCccEEEEcCeeCCC
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT 363 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-----p~sG~i~i~G~~i~~ 363 (614)
...++++|++|.|++ +.+++|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 11 ~~~l~~~~l~~~~~~------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~ 84 (260)
T PRK10744 11 PSKIQVRNLNFYYGK------FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILT 84 (260)
T ss_pred CceEEEEEEEEEeCC------eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccc
Confidence 457999999999973 469999999999999999999999999999999999986 589999999998852
Q ss_pred ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHH
Q 007178 364 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 437 (614)
Q Consensus 364 ---~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kq 437 (614)
.....++++||+||++.+++ +|++||+.+..... +.+.++.+++++++++.+++.+ .+..++++.+|||||||
T Consensus 85 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 163 (260)
T PRK10744 85 PKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQ 163 (260)
T ss_pred cccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHH
Confidence 23456788999999998888 79999998765433 3444555677899999999841 12568899999999999
Q ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHH
Q 007178 438 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 517 (614)
Q Consensus 438 rl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 517 (614)
|++|||||+.+|+++||||||+|||+.+++.+.+.|+++++++|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 164 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 164 RLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred HHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998766899999999999999999999999999999999998875
Q ss_pred H
Q 007178 518 A 518 (614)
Q Consensus 518 ~ 518 (614)
+
T Consensus 244 ~ 244 (260)
T PRK10744 244 T 244 (260)
T ss_pred h
Confidence 4
No 117
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-47 Score=387.26 Aligned_cols=224 Identities=26% Similarity=0.437 Sum_probs=196.4
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC--C---CccEEEEcCeeCCC
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR--T---TSGTAYVQGLDIRT 363 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~--p---~sG~i~i~G~~i~~ 363 (614)
.++++++|++|.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++..
T Consensus 10 ~~~l~i~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~ 83 (259)
T PRK14274 10 QEVYQINGMNLWYGQ------HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILK 83 (259)
T ss_pred CceEEEeeEEEEECC------eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccc
Confidence 457999999999973 469999999999999999999999999999999999987 3 69999999998752
Q ss_pred ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHH
Q 007178 364 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 437 (614)
Q Consensus 364 ---~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kq 437 (614)
.....++.+||+||++.+++. |++||+.+.....+. ..++.+++++++++.+++.+ .+..++++.+|||||||
T Consensus 84 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 84 GKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQ 162 (259)
T ss_pred cccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHH
Confidence 234557789999999999886 999999886555443 23445567888999999852 12468899999999999
Q ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHH
Q 007178 438 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 517 (614)
Q Consensus 438 rl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 517 (614)
|++|||||+.+|+++||||||+|||+.+++.+++.|++.++++|||++||+++++..+|||+++|++|++++.|+++++.
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999999999999999766899999999999999999999999999999999999886
Q ss_pred Hh
Q 007178 518 AR 519 (614)
Q Consensus 518 ~~ 519 (614)
++
T Consensus 243 ~~ 244 (259)
T PRK14274 243 SN 244 (259)
T ss_pred hC
Confidence 53
No 118
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-47 Score=388.85 Aligned_cols=223 Identities=25% Similarity=0.445 Sum_probs=195.8
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CccEEEEcCeeCCC
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT 363 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~sG~i~i~G~~i~~ 363 (614)
...|+++|++|.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++..
T Consensus 17 ~~~l~~~nl~~~~~~------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~ 90 (267)
T PRK14235 17 EIKMRARDVSVFYGE------KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYD 90 (267)
T ss_pred CceEEEEeEEEEECC------EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcc
Confidence 347999999999973 5699999999999999999999999999999999999975 89999999998853
Q ss_pred ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC--CchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHH
Q 007178 364 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL--KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMK 436 (614)
Q Consensus 364 ---~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~--~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~k 436 (614)
.....++.+||+||++.+++. |+.||+.+....++. ...+.+++++++++.+++.+ ....++++.+||||||
T Consensus 91 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~ 169 (267)
T PRK14235 91 PRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQ 169 (267)
T ss_pred cccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHH
Confidence 234567789999999998885 999999876554443 23344567889999999952 0245788999999999
Q ss_pred HHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHH
Q 007178 437 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 516 (614)
Q Consensus 437 qrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l 516 (614)
||++|||||+.+|+++||||||+|||+.+++.+.++|+++++++|||++||+++++..+|||+++|++|+++..|+++++
T Consensus 170 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14235 170 QRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKM 249 (267)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999876689999999999999999999999999999999999887
Q ss_pred HH
Q 007178 517 KA 518 (614)
Q Consensus 517 ~~ 518 (614)
..
T Consensus 250 ~~ 251 (267)
T PRK14235 250 FT 251 (267)
T ss_pred Hh
Confidence 54
No 119
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=4.2e-47 Score=390.34 Aligned_cols=229 Identities=26% Similarity=0.346 Sum_probs=197.2
Q ss_pred CeEEEEeEEEEcCCCCC---CCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cH
Q 007178 290 HAIISDNLRKIYPGRDG---NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DM 365 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~---~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~ 365 (614)
++|+++||+|+|++..+ .+.+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence 46999999999963211 012469999999999999999999999999999999999999999999999998854 22
Q ss_pred HHhhcceEEEcCCCC--CCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHH
Q 007178 366 DRIYTSMGVCPQEDL--LWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 442 (614)
Q Consensus 366 ~~~~~~ig~~~Q~~~--l~~~lTv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia 442 (614)
...++.+||+||++. +++.+|+.|++.+..... +....+..++++++++.+|+.+ ...++++.+||||||||++||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LS~G~~qrv~la 161 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLP-DHASYYPHMLAPGQKQRLGLA 161 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh-HHHhcCchhcCHHHHHHHHHH
Confidence 334567999999975 678889999998765543 2334455567899999999952 367889999999999999999
Q ss_pred HHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 443 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 443 ~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
+||+.+|+++||||||+|||+.+++.+++.|+++ + .|+|||++||+++++..+|||+++|++|+++..|+++++.+.
T Consensus 162 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 240 (267)
T PRK15112 162 RALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLAS 240 (267)
T ss_pred HHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHhcC
Confidence 9999999999999999999999999999999986 3 389999999999999999999999999999999999887653
No 120
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=5.5e-47 Score=399.91 Aligned_cols=234 Identities=24% Similarity=0.403 Sum_probs=201.6
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEEcCeeCCCc-
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT---SGTAYVQGLDIRTD- 364 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~---sG~i~i~G~~i~~~- 364 (614)
.+.++++|+++.|+...+ ...+|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|+++...
T Consensus 10 ~~~L~i~~l~~~~~~~~~--~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~ 87 (330)
T PRK09473 10 DALLDVKDLRVTFSTPDG--DVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLP 87 (330)
T ss_pred CceEEEeCeEEEEecCCC--CEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCC
Confidence 357999999999964211 357999999999999999999999999999999999999996 99999999998642
Q ss_pred H---HHhh-cceEEEcCCC--CCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCCC-CcccccCCCCChhHH
Q 007178 365 M---DRIY-TSMGVCPQED--LLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFHG-GVADKQAGKYSGGMK 436 (614)
Q Consensus 365 ~---~~~~-~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~-~~~~~~~~~LSgG~k 436 (614)
. .+.| +.|+|+||++ .+++.+|+.+++....... +.+.++..+++.++++.++|.+. +..++++++||||||
T Consensus 88 ~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~ 167 (330)
T PRK09473 88 EKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMR 167 (330)
T ss_pred HHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHH
Confidence 2 2233 4799999997 6899999999998765443 34455666788999999999631 235789999999999
Q ss_pred HHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHH
Q 007178 437 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPK 514 (614)
Q Consensus 437 qrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~--~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~ 514 (614)
||++|||||+.+|++||+||||+|||+.++++++++|++++ .|.|||++|||++++..+||||++|.+|++++.|+++
T Consensus 168 QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~ 247 (330)
T PRK09473 168 QRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNAR 247 (330)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999864 3899999999999999999999999999999999999
Q ss_pred HHHHhcCCcE
Q 007178 515 ELKARYGGSY 524 (614)
Q Consensus 515 ~l~~~~~~~~ 524 (614)
++.+.....|
T Consensus 248 ~i~~~p~~py 257 (330)
T PRK09473 248 DVFYQPSHPY 257 (330)
T ss_pred HHHhCCCCHH
Confidence 9977654444
No 121
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.9e-47 Score=382.85 Aligned_cols=214 Identities=29% Similarity=0.461 Sum_probs=188.5
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc-H-HHhh
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-M-DRIY 369 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~-~-~~~~ 369 (614)
++++|+++.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... . ...+
T Consensus 1 l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (230)
T TIGR03410 1 LEVSNLNVYYGQ------SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74 (230)
T ss_pred CEEEeEEEEeCC------eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHH
Confidence 468999999973 5699999999999999999999999999999999999999999999999987542 2 2235
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcC-CCCCCcccccCCCCChhHHHHHHHHHHHhCC
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVN-LFHGGVADKQAGKYSGGMKRRLSVAISLIGN 448 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~ 448 (614)
+.+||+||++.+++.+|++||+.+.....+.. ..+..+++++.++ +. ...++++.+||||||||++|||||+.+
T Consensus 75 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~---~~~~~~~~l~~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~~ 149 (230)
T TIGR03410 75 AGIAYVPQGREIFPRLTVEENLLTGLAALPRR---SRKIPDEIYELFPVLK--EMLGRRGGDLSGGQQQQLAIARALVTR 149 (230)
T ss_pred hCeEEeccCCcccCCCcHHHHHHHHHHhcCcc---hHHHHHHHHHHHHhHH--HHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 68999999999999999999998865443322 2334577777776 44 367999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHH
Q 007178 449 PKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 516 (614)
Q Consensus 449 p~vllLDEPtsgLD~~~~~~i~~~l~~~~--~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l 516 (614)
|+++||||||+|||+.+++.++++|++.+ +|+|||++||+++++..+|||++++++|++++.|+.+++
T Consensus 150 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 150 PKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999999864 389999999999999999999999999999999998877
No 122
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-47 Score=389.59 Aligned_cols=221 Identities=25% Similarity=0.399 Sum_probs=195.0
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHH
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDR 367 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~ 367 (614)
..+++++|+++.|++ +.+++|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. ....
T Consensus 9 ~~~l~i~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~ 82 (265)
T PRK10575 9 DTTFALRNVSFRVPG------RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKA 82 (265)
T ss_pred CceEEEeeEEEEECC------EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHH
Confidence 457999999999973 579999999999999999999999999999999999999999999999998753 3345
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhh-hcC---CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 007178 368 IYTSMGVCPQEDLLWETLTGREHLLFYGR-LKN---LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 443 (614)
Q Consensus 368 ~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~-~~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~ 443 (614)
.++.+||+||++.+++.+|+.||+.+... ..+ ......+++++++++.+++. +..++++.+||||||||++|||
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~lar 160 (265)
T PRK10575 83 FARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLK--PLAHRLVDSLSGGERQRAWIAM 160 (265)
T ss_pred HhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCH--HHhcCCcccCCHHHHHHHHHHH
Confidence 56789999999888899999999987432 111 11233456788999999996 3789999999999999999999
Q ss_pred HHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHH
Q 007178 444 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 517 (614)
Q Consensus 444 al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 517 (614)
||+.+|+++||||||+|||+.+++.+++.|+++ ++ |+|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 161 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 161 LVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 999999999999999999999999999999986 44 899999999999999999999999999999999988764
No 123
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.4e-47 Score=385.24 Aligned_cols=224 Identities=25% Similarity=0.399 Sum_probs=195.9
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC--C---CccEEEEcCeeCCC-
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR--T---TSGTAYVQGLDIRT- 363 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~--p---~sG~i~i~G~~i~~- 363 (614)
..++++|++|+|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++..
T Consensus 3 ~~l~~~nl~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~ 76 (252)
T PRK14256 3 NKVKLEQLNVHFGK------NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDR 76 (252)
T ss_pred cEEEEEEEEEEeCC------eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccc
Confidence 36899999999973 469999999999999999999999999999999999986 4 69999999998853
Q ss_pred --cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 007178 364 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 438 (614)
Q Consensus 364 --~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqr 438 (614)
.....++.+||+||++.+++.+|++||+.+.....+. ...+.+++++++++.+++.. .+..++.+.+||||||||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14256 77 GVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQR 156 (252)
T ss_pred cCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHH
Confidence 2335577899999999999999999999876544332 23445567889999999852 124578899999999999
Q ss_pred HHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 439 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 439 l~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
++|||||+.+|+++||||||+|||+.+++.+++.|+++.+++|||++||+++++..+|||+++|++|++++.|+++++..
T Consensus 157 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 236 (252)
T PRK14256 157 LCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFT 236 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999998667899999999999999999999999999999999988765
Q ss_pred h
Q 007178 519 R 519 (614)
Q Consensus 519 ~ 519 (614)
.
T Consensus 237 ~ 237 (252)
T PRK14256 237 T 237 (252)
T ss_pred C
Confidence 3
No 124
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2.3e-45 Score=448.08 Aligned_cols=218 Identities=26% Similarity=0.400 Sum_probs=192.9
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEEcCeeCCCcHH
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR---TTSGTAYVQGLDIRTDMD 366 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~---p~sG~i~i~G~~i~~~~~ 366 (614)
..++++||++.|+.+. .++.+|+|+|+++++||++||+||||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 758 ~~l~~~nl~~~~~~~~--~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~--- 832 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKK--EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS--- 832 (1394)
T ss_pred ceEEEEeeEEEecCCC--CCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh---
Confidence 3589999999996321 14679999999999999999999999999999999999997 789999999998842
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcC---CCchhHHHHHHHHHHHcCCCCCCcccccCC----CCChhHHHHH
Q 007178 367 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKN---LKGPALTQAVEESLKSVNLFHGGVADKQAG----KYSGGMKRRL 439 (614)
Q Consensus 367 ~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~----~LSgG~kqrl 439 (614)
..|+.+|||||++.+++.+||+||+.+.+.++. .++++.+++++++++.++|. +.+|+.++ +||||||||+
T Consensus 833 ~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~--~~~d~~v~~~~~~LSgGqrqRl 910 (1394)
T TIGR00956 833 SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEME--SYADAVVGVPGEGLNVEQRKRL 910 (1394)
T ss_pred hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh--hhCCCeeCCCCCCCCHHHhhHH
Confidence 457789999999999999999999999887653 23345567899999999997 37888887 7999999999
Q ss_pred HHHHHHhCCCC-EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHH-HHhhCCEEEEEeCC-EEEEEcCHH
Q 007178 440 SVAISLIGNPK-VVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEE-AEALCDRLGIFVDG-SLQCIGNPK 514 (614)
Q Consensus 440 ~ia~al~~~p~-vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e-~~~l~dri~il~~G-~l~~~g~~~ 514 (614)
+||+||+.+|+ +|+|||||+|||+.+++.+++.|+++ ++|+|||++||+++. +.+.|||+++|++| ++++.|++.
T Consensus 911 ~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~ 989 (1394)
T TIGR00956 911 TIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLG 989 (1394)
T ss_pred HHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcc
Confidence 99999999997 99999999999999999999999986 579999999999986 45679999999997 999999873
No 125
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-47 Score=387.27 Aligned_cols=219 Identities=27% Similarity=0.463 Sum_probs=193.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhh
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 369 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~ 369 (614)
+++++|++++|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .....+
T Consensus 2 ~l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (255)
T PRK11231 2 TLRTENLTVGYGT------KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLA 75 (255)
T ss_pred EEEEEeEEEEECC------EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHh
Confidence 5899999999973 579999999999999999999999999999999999999999999999998753 234456
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhh----hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGR----LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 445 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~----~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al 445 (614)
+.+||+||++.+++.+|+.||+.+... ..+...++..++++++++.+++. +..++++.+||||||||++||||+
T Consensus 76 ~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral 153 (255)
T PRK11231 76 RRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRIN--HLADRRLTDLSGGQRQRAFLAMVL 153 (255)
T ss_pred hheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCH--HHHcCCcccCCHHHHHHHHHHHHH
Confidence 779999999999989999999987421 11222234456788999999996 378999999999999999999999
Q ss_pred hCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHH
Q 007178 446 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 517 (614)
Q Consensus 446 ~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 517 (614)
+.+|+++||||||+|||+.+++.+++.|++++ +|+|||++||+++++.++|||+++|++|+++..|+++++.
T Consensus 154 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 226 (255)
T PRK11231 154 AQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226 (255)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhc
Confidence 99999999999999999999999999999864 5899999999999999999999999999999999887764
No 126
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=6e-47 Score=380.05 Aligned_cols=216 Identities=24% Similarity=0.414 Sum_probs=188.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc-HH--
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MD-- 366 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~-~~-- 366 (614)
++++++|++++|++.. ..+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ..
T Consensus 5 ~~l~~~~l~~~~~~~~--~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~ 82 (228)
T PRK10584 5 NIVEVHHLKKSVGQGE--HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEAR 82 (228)
T ss_pred ceEEEeeeEEEccCCC--cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHH
Confidence 4799999999997421 013599999999999999999999999999999999999999999999999988542 11
Q ss_pred -Hh-hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 007178 367 -RI-YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 444 (614)
Q Consensus 367 -~~-~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~a 444 (614)
.. ++.+||+||++.+++.+|++||+.+....++...++.+++++++++.+++. +..++++.+||||||||++||+|
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~Ge~qrl~la~a 160 (228)
T PRK10584 83 AKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLG--KRLDHLPAQLSGGEQQRVALARA 160 (228)
T ss_pred HHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH--hHhhCChhhCCHHHHHHHHHHHH
Confidence 12 357999999999999999999998765444444445567889999999996 37789999999999999999999
Q ss_pred HhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEE
Q 007178 445 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCI 510 (614)
Q Consensus 445 l~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~ 510 (614)
|+.+|+++||||||+|||+.+++.+++.|+++ ++ |+|||++||++++++. |||+++|++|++++.
T Consensus 161 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~-~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 161 FNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR-CDRRLRLVNGQLQEE 227 (228)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEECCEEEec
Confidence 99999999999999999999999999999986 44 8999999999999865 999999999998753
No 127
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-47 Score=383.69 Aligned_cols=221 Identities=24% Similarity=0.410 Sum_probs=194.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEEcCeeCCC-cHH
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR---TTSGTAYVQGLDIRT-DMD 366 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~---p~sG~i~i~G~~i~~-~~~ 366 (614)
+++++|+++.|++ +.+++|+||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.. ...
T Consensus 2 ~~~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~ 75 (246)
T PRK14269 2 IAKTTNLNLFYGK------KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVV 75 (246)
T ss_pred ceeeeeeEEEECC------EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHH
Confidence 5889999999973 569999999999999999999999999999999999974 799999999999864 334
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC--CchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHHHHHH
Q 007178 367 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL--KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRLSVA 442 (614)
Q Consensus 367 ~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~--~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqrl~ia 442 (614)
..++.+||+||++.+++ .|++||+.+....++. ..+..+++++++++.+++.+ .+..++++.+||||||||+++|
T Consensus 76 ~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 154 (246)
T PRK14269 76 ALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIA 154 (246)
T ss_pred HHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHH
Confidence 56778999999999997 6999999886555443 12344567889999999952 0246888999999999999999
Q ss_pred HHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 443 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 443 ~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
|||+.+|+++||||||+|||+.+++.+.+.|++..+|+|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus 155 ral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 155 RALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 (246)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999987668999999999999999999999999999999999998764
No 128
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.9e-47 Score=384.39 Aligned_cols=223 Identities=26% Similarity=0.418 Sum_probs=195.8
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CccEEEEcCeeCCC
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT 363 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~sG~i~i~G~~i~~ 363 (614)
.++++++|+++.|++ +.+++|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++..
T Consensus 2 ~~~l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~ 75 (251)
T PRK14270 2 KIKMESKNLNLWYGE------KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYD 75 (251)
T ss_pred ccEEEEEEeEEEECC------eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccc
Confidence 357999999999973 5699999999999999999999999999999999999875 89999999999853
Q ss_pred ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHH
Q 007178 364 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 437 (614)
Q Consensus 364 ---~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kq 437 (614)
.....++.+||+||++.+++ +|++||+.+.....+. ...+.+++++++++.+++.+ .+..++++.+|||||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 154 (251)
T PRK14270 76 KDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQ 154 (251)
T ss_pred ccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHH
Confidence 22345678999999999988 8999999987655443 23344567888999998842 12568899999999999
Q ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHH
Q 007178 438 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 517 (614)
Q Consensus 438 rl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 517 (614)
|++||||++.+|+++||||||+|||+.+++.+++.|++.++++|||++||+++++..+|||+++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 155 RLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 99999999999999999999999999999999999998766799999999999999999999999999999999999875
Q ss_pred H
Q 007178 518 A 518 (614)
Q Consensus 518 ~ 518 (614)
.
T Consensus 235 ~ 235 (251)
T PRK14270 235 L 235 (251)
T ss_pred c
Confidence 4
No 129
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-47 Score=377.34 Aligned_cols=209 Identities=26% Similarity=0.427 Sum_probs=182.8
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcc
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 371 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ 371 (614)
|+++|++|+|++ +. .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ..++.
T Consensus 1 i~~~~l~~~~~~------~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~-~~~~~ 71 (211)
T cd03298 1 VRLDKIRFSYGE------QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAP-PADRP 71 (211)
T ss_pred CEEEeEEEEeCC------Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCC-HhHcc
Confidence 468999999963 22 3999999999999999999999999999999999999999999999885432 23578
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCE
Q 007178 372 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 451 (614)
Q Consensus 372 ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~v 451 (614)
+||+||++.+++.+|++||+.+.........++.+++++++++.+++. +..++++.+||||||||++|||||+.+|++
T Consensus 72 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~ia~al~~~p~l 149 (211)
T cd03298 72 VSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLA--GLEKRLPGELSGGERQRVALARVLVRDKPV 149 (211)
T ss_pred EEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCH--HHHhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999998754321111233456789999999996 378899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEc
Q 007178 452 VYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 511 (614)
Q Consensus 452 llLDEPtsgLD~~~~~~i~~~l~~~~--~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g 511 (614)
+||||||+|||+.+++.+++.|++++ +|+|||++||+++++..+|||+++|++|++++.|
T Consensus 150 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 150 LLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999863 4899999999999999999999999999998754
No 130
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-46 Score=383.62 Aligned_cols=223 Identities=25% Similarity=0.419 Sum_probs=194.8
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCC---CCC--CccEEEEcCeeCCC-
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI---TRT--TSGTAYVQGLDIRT- 363 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl---~~p--~sG~i~i~G~~i~~- 363 (614)
++++++|++|.|++ +.+++|+||++++||++||+||||||||||+++|+|+ .+| ++|+|.++|+++..
T Consensus 2 ~~l~~~~~~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~ 75 (250)
T PRK14245 2 VKIDARDVNFWYGD------FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDK 75 (250)
T ss_pred cEEEEEEEEEEECC------EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccc
Confidence 47899999999973 5699999999999999999999999999999999997 455 59999999998853
Q ss_pred --cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc-hhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 007178 364 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG-PALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 438 (614)
Q Consensus 364 --~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqr 438 (614)
.....++.+||+||++.+++ .|++||+.+....++... +..+++++++++.+++.+ ....++++.+||||||||
T Consensus 76 ~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 154 (250)
T PRK14245 76 GVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQR 154 (250)
T ss_pred cccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHH
Confidence 23456778999999999887 599999987655444322 334567889999999852 124688999999999999
Q ss_pred HHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 439 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 439 l~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
++|||||+.+|+++||||||+|||+.+++.+++.|+++++++|||++||+++++.++|||+++|++|+++..|+++++.+
T Consensus 155 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~ 234 (250)
T PRK14245 155 LCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFT 234 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999999999988678999999999999999999999999999999999998865
Q ss_pred h
Q 007178 519 R 519 (614)
Q Consensus 519 ~ 519 (614)
.
T Consensus 235 ~ 235 (250)
T PRK14245 235 N 235 (250)
T ss_pred C
Confidence 3
No 131
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=3.3e-47 Score=384.18 Aligned_cols=200 Identities=30% Similarity=0.519 Sum_probs=179.9
Q ss_pred cceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEc-CCCCCCCCCCHH
Q 007178 310 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCP-QEDLLWETLTGR 388 (614)
Q Consensus 310 ~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~-Q~~~l~~~lTv~ 388 (614)
+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.......++.+||+| |++.+++.+|++
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~ 113 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVI 113 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHH
Confidence 5799999999999999999999999999999999999999999999999886544445667899998 567888899999
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHH
Q 007178 389 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNN 468 (614)
Q Consensus 389 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~ 468 (614)
||+.+...+++...++..++++++++.+++. +..++++.+||||||||+++|+||+.+|+++||||||+|||+.+++.
T Consensus 114 e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~ 191 (236)
T cd03267 114 DSFYLLAAIYDLPPARFKKRLDELSELLDLE--ELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQEN 191 (236)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh--hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHH
Confidence 9999876666555555667788999999996 37899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-c-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEc
Q 007178 469 LWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 511 (614)
Q Consensus 469 i~~~l~~~-~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g 511 (614)
+.++|++. + +|+|||++||+++++..+||++++|++|++++.|
T Consensus 192 l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 192 IRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 99999986 3 3899999999999999999999999999998764
No 132
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=6.1e-47 Score=385.85 Aligned_cols=220 Identities=24% Similarity=0.402 Sum_probs=195.0
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc-------
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD------- 364 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~------- 364 (614)
|+++|+++.|++ +.+++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...
T Consensus 1 i~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~ 74 (252)
T TIGR03005 1 VRFSDVTKRFGI------LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPL 74 (252)
T ss_pred CEEEEEEEEeCC------eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccc
Confidence 468999999973 4699999999999999999999999999999999999999999999999987421
Q ss_pred -------HHHhhcceEEEcCCCCCCCCCCHHHHHHHHhh-hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHH
Q 007178 365 -------MDRIYTSMGVCPQEDLLWETLTGREHLLFYGR-LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK 436 (614)
Q Consensus 365 -------~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~k 436 (614)
....++.+||+||++.+++.+|++||+.+... .++...++.++++.++++.+|+. +..++.+.+||||||
T Consensus 75 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~ 152 (252)
T TIGR03005 75 VPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLA--DKADHMPAQLSGGQQ 152 (252)
T ss_pred cccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh--hHhhcChhhcCHHHH
Confidence 13456789999999999999999999987532 23334445566788999999996 478999999999999
Q ss_pred HHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHH
Q 007178 437 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPK 514 (614)
Q Consensus 437 qrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~ 514 (614)
||++|||||+.+|+++||||||+|||+.+++.+++.|+++ ++ |+|||++||+++++..+|||+++|++|++++.|+++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 232 (252)
T TIGR03005 153 QRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPD 232 (252)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999986 43 899999999999999999999999999999999998
Q ss_pred HHHHh
Q 007178 515 ELKAR 519 (614)
Q Consensus 515 ~l~~~ 519 (614)
++.+.
T Consensus 233 ~~~~~ 237 (252)
T TIGR03005 233 EIFRQ 237 (252)
T ss_pred HHhcC
Confidence 87543
No 133
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-46 Score=385.49 Aligned_cols=222 Identities=27% Similarity=0.438 Sum_probs=195.7
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CccEEEEcCeeCCC--
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT-- 363 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~sG~i~i~G~~i~~-- 363 (614)
.++++|++|+|++ +.+++|+||++++||++||+||||||||||+++|+|+++| ++|+|.++|+++..
T Consensus 4 ~l~i~~v~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~ 77 (258)
T PRK14241 4 RIDVKDLNIYYGS------FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPG 77 (258)
T ss_pred cEEEeeEEEEECC------EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccc
Confidence 6899999999973 4699999999999999999999999999999999999974 79999999998742
Q ss_pred -cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHHH
Q 007178 364 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 439 (614)
Q Consensus 364 -~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqrl 439 (614)
.....++.+||+||++.+++.+|++||+.+....++. ..++.+++++++++.+++.+ .+..++++.+||||||||+
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv 157 (258)
T PRK14241 78 VDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRL 157 (258)
T ss_pred cChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHH
Confidence 2345677899999999999999999999886554432 33445667889999999841 1356889999999999999
Q ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEe------CCEEEEEcCH
Q 007178 440 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV------DGSLQCIGNP 513 (614)
Q Consensus 440 ~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~------~G~l~~~g~~ 513 (614)
+|||||+.+|+++||||||+|||+.+++.++++|++.++++|||++||+++++..+|||+++|+ +|++++.|++
T Consensus 158 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~ 237 (258)
T PRK14241 158 CIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDT 237 (258)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCCH
Confidence 9999999999999999999999999999999999987667999999999999999999999997 8999999999
Q ss_pred HHHHH
Q 007178 514 KELKA 518 (614)
Q Consensus 514 ~~l~~ 518 (614)
+++..
T Consensus 238 ~~~~~ 242 (258)
T PRK14241 238 EKIFS 242 (258)
T ss_pred HHHHh
Confidence 88854
No 134
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-47 Score=389.12 Aligned_cols=222 Identities=27% Similarity=0.447 Sum_probs=196.9
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 368 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~ 368 (614)
++++++|++|.|++. .+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .....
T Consensus 6 ~~l~i~~l~~~~~~~----~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~ 81 (269)
T PRK13648 6 SIIVFKNVSFQYQSD----ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKL 81 (269)
T ss_pred ceEEEEEEEEEcCCC----CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 479999999999742 2469999999999999999999999999999999999999999999999998854 34456
Q ss_pred hcceEEEcCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhC
Q 007178 369 YTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 447 (614)
Q Consensus 369 ~~~ig~~~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~ 447 (614)
++.+||+||++. +++..|+++|+.+.....+...++..++++++++.+++. +..++++.+||||||||++||||++.
T Consensus 82 ~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~laral~~ 159 (269)
T PRK13648 82 RKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDML--ERADYEPNALSGGQKQRVAIAGVLAL 159 (269)
T ss_pred HhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCc--hhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 788999999974 677789999998865544444455567788999999996 37899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 448 NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 448 ~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
+|+++||||||+|||+.+++.+++.|+++. + |+|||++||+++++.. |||+++|++|++++.|+++++.+
T Consensus 160 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~~~ 231 (269)
T PRK13648 160 NPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEIFD 231 (269)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999863 3 8999999999999986 99999999999999999988754
No 135
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-47 Score=384.05 Aligned_cols=216 Identities=27% Similarity=0.427 Sum_probs=192.1
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhh
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 369 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~ 369 (614)
.++++|++|+|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .....+
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 76 (241)
T PRK14250 3 EIEFKEVSYSSFG------KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLR 76 (241)
T ss_pred eEEEEeEEEEeCC------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhh
Confidence 5899999999963 469999999999999999999999999999999999999999999999998854 334556
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCC
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 449 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p 449 (614)
+.+||+||++.+++ .|++||+.+....++ ...+++.++++.+++.+ ++.++++.+||||||||++||||++.+|
T Consensus 77 ~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~-~~~~~~~~~LS~G~~qrl~la~al~~~p 150 (241)
T PRK14250 77 RKIGMVFQQPHLFE-GTVKDNIEYGPMLKG----EKNVDVEYYLSIVGLNK-EYATRDVKNLSGGEAQRVSIARTLANNP 150 (241)
T ss_pred hcEEEEecCchhch-hhHHHHHhcchhhcC----cHHHHHHHHHHHcCCCH-HHhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 78999999999887 599999987543322 12356788999999952 3678999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 450 KVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 450 ~vllLDEPtsgLD~~~~~~i~~~l~~~-~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
+++||||||+|||+.+++.+.+.|+++ + +|+|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (241)
T PRK14250 151 EVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFT 221 (241)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhc
Confidence 999999999999999999999999986 3 48999999999999999999999999999999999988754
No 136
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=8.4e-48 Score=378.74 Aligned_cols=303 Identities=25% Similarity=0.402 Sum_probs=243.5
Q ss_pred eEEEEeEEEEcCCCC---------------CCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEE
Q 007178 291 AIISDNLRKIYPGRD---------------GNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 355 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~---------------~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~ 355 (614)
++.++||+|.|...- +.....|++|+||+|++|+++|++|||||||||++|||+|++.|++|.|.
T Consensus 3 ~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~ 82 (325)
T COG4586 3 MIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR 82 (325)
T ss_pred eeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEE
Confidence 567788888775321 11235699999999999999999999999999999999999999999999
Q ss_pred EcCeeCCCcHHHhhcceEEEc-CCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChh
Q 007178 356 VQGLDIRTDMDRIYTSMGVCP-QEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG 434 (614)
Q Consensus 356 i~G~~i~~~~~~~~~~ig~~~-Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG 434 (614)
++|++...+.+..-+++|+++ |.-.++.++.+.|.+..-..++.++.++.+++.+.+.+.++|+ +..+.+++.||-|
T Consensus 83 V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~--~~lk~~vr~LSlG 160 (325)
T COG4586 83 VNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLE--GFLKWPVRKLSLG 160 (325)
T ss_pred ecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcch--hhhhhhhhhccch
Confidence 999998877777778888875 7788988899999998888888889999999999999999997 4889999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcC
Q 007178 435 MKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 512 (614)
Q Consensus 435 ~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~--~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~ 512 (614)
||+|+.+|.||+++|+||+|||||-|||..++..+.+.+++. +++.||++|||+++.++++||||+.|++|+++.+|+
T Consensus 161 qRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~ 240 (325)
T COG4586 161 QRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGT 240 (325)
T ss_pred HHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeeccc
Confidence 999999999999999999999999999999999999999986 359999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEEEeCCCcHHHHHHHHHhcCCCceeEEEeccEEEEEecCCCCCHHHHHHHHHHHhcCCceeEEEec
Q 007178 513 PKELKARYGGSYVFTMTTSADHEEEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTVFAWGLA 592 (614)
Q Consensus 513 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~ 592 (614)
.++++++|+....+.+....... ...+ ...++..... +....+..+. .+..+.+.....++.+.|..+.
T Consensus 241 l~~l~~~f~~~k~~~~el~~~~~--~~~l--~~l~d~~~~~--~~~~~~~~~r-----~~~~~~i~~~~~e~~v~Dl~v~ 309 (325)
T COG4586 241 LAQLQEQFGPYKEFSVELKQAKS--LSQL--ALLGDVTIEE--GLNIKNDVSR-----EESADIIAKLLAEFEVRDLTVE 309 (325)
T ss_pred HHHHHHHhCCceEEEEEEccccc--chhc--cccchhhhhc--ccchhhcchh-----HHHHHHHHHHHHhhhhccCCCC
Confidence 99999999998777766541111 0000 0001111100 1112222111 1112222233346778899999
Q ss_pred cCCHHHHHHHhhcc
Q 007178 593 DTTLEDVFIKVARH 606 (614)
Q Consensus 593 ~~tLE~vFl~~~~~ 606 (614)
++..|++--++.++
T Consensus 310 d~~ie~vi~r~y~~ 323 (325)
T COG4586 310 DPEIEDVIRRIYQK 323 (325)
T ss_pred CCcHHHHHHHHHhc
Confidence 99999998877654
No 137
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.6e-47 Score=391.36 Aligned_cols=222 Identities=25% Similarity=0.451 Sum_probs=197.2
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCc---cEEEEcCeeCCC-cH
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS---GTAYVQGLDIRT-DM 365 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~s---G~i~i~G~~i~~-~~ 365 (614)
.+++++|++|.|++. .+.+++|+||+|++||++||+||||||||||+++|+|+++|++ |+|.++|+++.. ..
T Consensus 4 ~~l~i~~l~~~~~~~----~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~ 79 (282)
T PRK13640 4 NIVEFKHVSFTYPDS----KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTV 79 (282)
T ss_pred ceEEEEEEEEEcCCC----CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCH
Confidence 479999999999642 2469999999999999999999999999999999999999998 899999999864 23
Q ss_pred HHhhcceEEEcCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 007178 366 DRIYTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 444 (614)
Q Consensus 366 ~~~~~~ig~~~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~a 444 (614)
...++++||+||++. +++.+|++||+.+.....+.+.++.+++++++++.+||. +..++++.+||||||||++||+|
T Consensus 80 ~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~LS~G~~qrv~lara 157 (282)
T PRK13640 80 WDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGML--DYIDSEPANLSGGQKQRVAIAGI 157 (282)
T ss_pred HHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCh--hHhcCCcccCCHHHHHHHHHHHH
Confidence 455678999999974 667789999998765555555566667899999999997 47899999999999999999999
Q ss_pred HhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 445 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 445 l~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~--~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
|+.+|+++||||||+|||+.+++.+++.|+++. .|+|||++||++++++ .|||+++|++|++++.|+++++.+
T Consensus 158 l~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 158 LAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999863 3899999999999995 799999999999999999988754
No 138
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.3e-47 Score=392.52 Aligned_cols=226 Identities=27% Similarity=0.390 Sum_probs=194.3
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC------
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT------ 363 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~------ 363 (614)
..++++|++|+|+++.. ..+.+++|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++..
T Consensus 5 ~~l~i~nl~~~~~~~~~-~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 5 KDIILDNVSYTYAKKTP-FEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred ceEEEEEEEEEeCCCCc-cccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 35899999999974210 01359999999999999999999999999999999999999999999999998742
Q ss_pred cHHHhhcceEEEcCCCC--CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHH
Q 007178 364 DMDRIYTSMGVCPQEDL--LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSV 441 (614)
Q Consensus 364 ~~~~~~~~ig~~~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~i 441 (614)
.....++.+||+||++. +++ .|++||+.+.....+...++..++++++++.++|.. ++.++++.+||||||||++|
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~-~~~~~~~~~LS~Gq~qrv~l 161 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPE-DYVKRSPFELSGGQKRRVAL 161 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh-hHhcCChhhCCHHHHHHHHH
Confidence 23456778999999973 454 599999987654444444455567888999999942 37899999999999999999
Q ss_pred HHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 442 AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 442 a~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
||||+.+|+++||||||+|||+.+++.+++.|+++ + +|+|||++||+++++.++|||+++|++|++++.|+++++.+
T Consensus 162 aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 240 (289)
T PRK13645 162 AGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFS 240 (289)
T ss_pred HHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999986 3 48999999999999999999999999999999999888743
No 139
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=8.3e-47 Score=387.77 Aligned_cols=227 Identities=22% Similarity=0.362 Sum_probs=195.5
Q ss_pred eEEEEeEEEEcCCCC---CCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc-H-
Q 007178 291 AIISDNLRKIYPGRD---GNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-M- 365 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~---~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~-~- 365 (614)
+++++|++|.|++.. +..++.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++... .
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 589999999996310 00135799999999999999999999999999999999999999999999999988542 1
Q ss_pred --HHhhcceEEEcCCC--CCCCCCCHHHHHHHHhhh-cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHH
Q 007178 366 --DRIYTSMGVCPQED--LLWETLTGREHLLFYGRL-KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 440 (614)
Q Consensus 366 --~~~~~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ 440 (614)
...++.+||+||++ .+++.+|++||+.+.... .+...++.++++.++++.+|+.. ...++++.+||||||||++
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~~LSgGe~qrv~ 160 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS-EDADKLPRQLSGGQLQRIN 160 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh-hhhhCChhhCCHHHHHHHH
Confidence 23567899999996 467789999999865432 23333445667899999999952 3678999999999999999
Q ss_pred HHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 441 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 441 ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
|||||+.+|+++||||||+|||+.+++.+++.|+++. + |+|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus 161 laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 240 (265)
T TIGR02769 161 IARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLS 240 (265)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHHcC
Confidence 9999999999999999999999999999999999863 3 8999999999999999999999999999999999998854
No 140
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-46 Score=387.47 Aligned_cols=222 Identities=24% Similarity=0.390 Sum_probs=194.2
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCccEEEEcCeeCCC
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT 363 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-----p~sG~i~i~G~~i~~ 363 (614)
..+++++|++++|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 11 ~~~l~i~nl~~~~~~------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~ 84 (269)
T PRK14259 11 NIIISLQNVTISYGT------FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYD 84 (269)
T ss_pred CceEEEEeEEEEECC------EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 357999999999973 569999999999999999999999999999999999987 699999999998742
Q ss_pred ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 007178 364 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 438 (614)
Q Consensus 364 ---~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqr 438 (614)
.....++.+||+||++.+++. |++||+.+....++.. .+.+++++++++.+++.. .+..++++.+||||||||
T Consensus 85 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 162 (269)
T PRK14259 85 PRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARINGYT-GDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQR 162 (269)
T ss_pred ccCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhcCCc-HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHH
Confidence 334567789999999999985 9999999876554432 234566788889888731 135688999999999999
Q ss_pred HHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeC-----------CEE
Q 007178 439 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVD-----------GSL 507 (614)
Q Consensus 439 l~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~-----------G~l 507 (614)
++|||||+.+|+++||||||+|||+.+++.++++|+++++++|||++||+++++..+|||+++|++ |++
T Consensus 163 l~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~ 242 (269)
T PRK14259 163 LCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYL 242 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceE
Confidence 999999999999999999999999999999999999887689999999999999999999999996 678
Q ss_pred EEEcCHHHHHH
Q 007178 508 QCIGNPKELKA 518 (614)
Q Consensus 508 ~~~g~~~~l~~ 518 (614)
++.|+++++.+
T Consensus 243 ~~~~~~~~~~~ 253 (269)
T PRK14259 243 VEFNETKKIFN 253 (269)
T ss_pred EEeCCHHHHHh
Confidence 99999988865
No 141
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=9.7e-47 Score=385.28 Aligned_cols=218 Identities=25% Similarity=0.427 Sum_probs=193.0
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhhc
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 370 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~~ 370 (614)
++++|+++.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .....++
T Consensus 2 l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 75 (256)
T TIGR03873 2 LRLSRVSWSAGG------RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARAR 75 (256)
T ss_pred ceEEeEEEEECC------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhh
Confidence 688999999973 579999999999999999999999999999999999999999999999998864 3344566
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhh-h---cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHh
Q 007178 371 SMGVCPQEDLLWETLTGREHLLFYGR-L---KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 446 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~l~~~~~-~---~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~ 446 (614)
.+||+||++.+++.+|++||+.+... . .+...++..+++.++++.+++. +..++++.+||||||||++||+|++
T Consensus 76 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~la~al~ 153 (256)
T TIGR03873 76 RVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELS--HLADRDMSTLSGGERQRVHVARALA 153 (256)
T ss_pred heEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcH--hhhcCCcccCCHHHHHHHHHHHHHh
Confidence 79999999888888999999987531 1 1112233446788999999996 4789999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHH
Q 007178 447 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 517 (614)
Q Consensus 447 ~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 517 (614)
.+|+++||||||+|||+.+++.++++|++++ +|+|||++||+++++.++|||+++|++|++++.|+.+++.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (256)
T TIGR03873 154 QEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225 (256)
T ss_pred cCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhh
Confidence 9999999999999999999999999999874 5899999999999999999999999999999999988763
No 142
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-46 Score=389.12 Aligned_cols=223 Identities=24% Similarity=0.400 Sum_probs=197.0
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhh
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 369 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~ 369 (614)
+++++|++++|++.. .+.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.. .....+
T Consensus 4 ~l~~~~l~~~~~~~~---~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 80 (277)
T PRK13642 4 ILEVENLVFKYEKES---DVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLR 80 (277)
T ss_pred eEEEEEEEEEcCCCC---cCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHh
Confidence 699999999997421 2469999999999999999999999999999999999999999999999999864 334567
Q ss_pred cceEEEcCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCC
Q 007178 370 TSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 448 (614)
Q Consensus 370 ~~ig~~~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~ 448 (614)
+.+||+||++. .++..|+.||+.+.....+...++..++++++++.+||. ++.++++.+||||||||++|||||+.+
T Consensus 81 ~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~lAraL~~~ 158 (277)
T PRK13642 81 RKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNML--DFKTREPARLSGGQKQRVAVAGIIALR 158 (277)
T ss_pred cceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH--hHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 88999999974 566789999998765544444555567889999999996 478999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 449 PKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 449 p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
|+++||||||+|||+.+++.+++.|+++. + |+|||++||+++++. .|||+++|++|++++.|+++++...
T Consensus 159 p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 159 PEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999864 3 899999999999997 5999999999999999999887653
No 143
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=2.7e-47 Score=378.60 Aligned_cols=205 Identities=27% Similarity=0.500 Sum_probs=178.8
Q ss_pred EEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceE
Q 007178 294 SDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMG 373 (614)
Q Consensus 294 ~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig 373 (614)
++|++|+|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++. ..++.+|
T Consensus 2 ~~~l~~~~~~------~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~----~~~~~i~ 71 (213)
T cd03235 2 VEDLTVSYGG------HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE----KERKRIG 71 (213)
T ss_pred cccceeEECC------EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH----HHHhheE
Confidence 6799999973 46999999999999999999999999999999999999999999999998763 3567899
Q ss_pred EEcCCCCCCC--CCCHHHHHHHHhhhcC----CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhC
Q 007178 374 VCPQEDLLWE--TLTGREHLLFYGRLKN----LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 447 (614)
Q Consensus 374 ~~~Q~~~l~~--~lTv~e~l~~~~~~~~----~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~ 447 (614)
|+||++.+++ .+|++||+.+...... ...++.+++++++++.+++. +..++++.+||||||||++|||||+.
T Consensus 72 ~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~la~al~~ 149 (213)
T cd03235 72 YVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLS--ELADRQIGELSGGQQQRVLLARALVQ 149 (213)
T ss_pred EeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCH--HHHhCCcccCCHHHHHHHHHHHHHHc
Confidence 9999987632 3799999987543211 12234456789999999996 37889999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEc
Q 007178 448 NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 511 (614)
Q Consensus 448 ~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g 511 (614)
+|+++||||||+|||+.+++.+++.|++.+ +|+|||++||+++++.++|||+++|++| +++.|
T Consensus 150 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 150 DPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 999999999999999999999999999864 7899999999999999999999999886 55543
No 144
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-46 Score=385.71 Aligned_cols=224 Identities=25% Similarity=0.423 Sum_probs=194.0
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCccEEEEcCeeCCC
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT 363 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-----p~sG~i~i~G~~i~~ 363 (614)
.++++++|++++|++ +.+++|+||++++||++||+||||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 19 ~~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 92 (268)
T PRK14248 19 EHILEVKDLSIYYGE------KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILD 92 (268)
T ss_pred CceEEEEEEEEEeCC------ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccc
Confidence 457999999999973 569999999999999999999999999999999999864 799999999998853
Q ss_pred ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc-hhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHH
Q 007178 364 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG-PALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 437 (614)
Q Consensus 364 ---~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kq 437 (614)
.....++.+||+||++.+++. |++||+.+.....+... ...++.+.++++.+++.. ....++++.+|||||||
T Consensus 93 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q 171 (268)
T PRK14248 93 SNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQ 171 (268)
T ss_pred ccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHH
Confidence 223456789999999999885 99999987644333222 233556788899998841 02468899999999999
Q ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHH
Q 007178 438 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 517 (614)
Q Consensus 438 rl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 517 (614)
|++|||||+.+|+++||||||+|||+.+++.++++|+++++++|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 172 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 172 RLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998766799999999999999999999999999999999998876
Q ss_pred Hh
Q 007178 518 AR 519 (614)
Q Consensus 518 ~~ 519 (614)
+.
T Consensus 252 ~~ 253 (268)
T PRK14248 252 TS 253 (268)
T ss_pred hC
Confidence 53
No 145
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-46 Score=379.23 Aligned_cols=219 Identities=35% Similarity=0.558 Sum_probs=197.0
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcc
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 371 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ 371 (614)
+.++|++++|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..... .++.
T Consensus 1 l~~~~l~~~~~~------~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~~ 73 (232)
T cd03300 1 IELENVSKFYGG------FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP-HKRP 73 (232)
T ss_pred CEEEeEEEEeCC------eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh-hhcc
Confidence 468999999973 569999999999999999999999999999999999999999999999998864322 3578
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCE
Q 007178 372 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 451 (614)
Q Consensus 372 ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~v 451 (614)
+||+||++.+++.+|++||+.+....++......+++++++++.+|+. +..++.+.+||+|||||++|||||+.+|++
T Consensus 74 i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~lS~G~~qrl~laral~~~p~l 151 (232)
T cd03300 74 VNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLE--GYANRKPSQLSGGQQQRVAIARALVNEPKV 151 (232)
T ss_pred eEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999998866555544455567888999999996 478999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 452 VYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 452 llLDEPtsgLD~~~~~~i~~~l~~~~-~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
+||||||+|||+.+++.+++.|++++ + |+|||++||+++++..+|||+++|++|++.+.|+.+++...
T Consensus 152 lllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 152 LLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 99999999999999999999999864 3 89999999999999999999999999999999998887653
No 146
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-46 Score=397.99 Aligned_cols=229 Identities=20% Similarity=0.277 Sum_probs=194.4
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC----CCccEEEEcCeeCCCc-H
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR----TTSGTAYVQGLDIRTD-M 365 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~----p~sG~i~i~G~~i~~~-~ 365 (614)
+++++||+|.|+...+ .+.+++|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|+++... .
T Consensus 3 ~L~v~~l~~~y~~~~~--~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~ 80 (330)
T PRK15093 3 LLDIRNLTIEFKTSDG--WVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred eEEEeeeEEEEeCCCC--CEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCH
Confidence 6899999999964211 3579999999999999999999999999999999999996 5899999999998542 2
Q ss_pred HH---h-hcceEEEcCCCC--CCCCCCHHHHHHHHhhh---cCC---CchhHHHHHHHHHHHcCCCCC-CcccccCCCCC
Q 007178 366 DR---I-YTSMGVCPQEDL--LWETLTGREHLLFYGRL---KNL---KGPALTQAVEESLKSVNLFHG-GVADKQAGKYS 432 (614)
Q Consensus 366 ~~---~-~~~ig~~~Q~~~--l~~~lTv~e~l~~~~~~---~~~---~~~~~~~~~~~~l~~~~L~~~-~~~~~~~~~LS 432 (614)
.. . ++.|||+||++. +.+.+|+.+++...... .+. ...+.++++.++++.+||.+. +..++++.+||
T Consensus 81 ~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LS 160 (330)
T PRK15093 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELT 160 (330)
T ss_pred HHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCC
Confidence 21 2 357999999975 67889999999764221 111 113445688999999999631 24589999999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEE
Q 007178 433 GGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCI 510 (614)
Q Consensus 433 gG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~--~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~ 510 (614)
||||||++|||||+.+|++|||||||+|||+.++++++++|++++ .|.|||++|||++++..+||||++|++|++++.
T Consensus 161 gG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~ 240 (330)
T PRK15093 161 EGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVET 240 (330)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999864 389999999999999999999999999999999
Q ss_pred cCHHHHHHhcC
Q 007178 511 GNPKELKARYG 521 (614)
Q Consensus 511 g~~~~l~~~~~ 521 (614)
|+++++.+...
T Consensus 241 g~~~~i~~~p~ 251 (330)
T PRK15093 241 APSKELVTTPH 251 (330)
T ss_pred CCHHHHHhCCC
Confidence 99999876543
No 147
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-46 Score=379.56 Aligned_cols=217 Identities=23% Similarity=0.386 Sum_probs=190.2
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhc
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 370 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~ 370 (614)
+++++|++|+|++ +. .|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++..... .++
T Consensus 1 ~l~~~~l~~~~~~------~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~-~~~ 71 (232)
T PRK10771 1 MLKLTDITWLYHH------LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP-SRR 71 (232)
T ss_pred CeEEEEEEEEECC------cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh-hhc
Confidence 3789999999963 22 38999999999999999999999999999999999999999999998754222 346
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCC
Q 007178 371 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 450 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~ 450 (614)
.+||+||++.+++.+|+.||+.+.........+..+++++++++.+|+. +..++++.+||||||||++||||++.+|+
T Consensus 72 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~~p~ 149 (232)
T PRK10771 72 PVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIE--DLLARLPGQLSGGQRQRVALARCLVREQP 149 (232)
T ss_pred cEEEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcH--HHHhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 7999999999999999999998653211111233456789999999996 47899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 451 VVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 451 vllLDEPtsgLD~~~~~~i~~~l~~~-~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
++||||||+|||+.+++.++++|+++ + +|+|||++||+++++..+|||+++|++|++.+.|+++++.+
T Consensus 150 lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~ 219 (232)
T PRK10771 150 ILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219 (232)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999986 4 38999999999999999999999999999999999988764
No 148
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-46 Score=379.47 Aligned_cols=217 Identities=26% Similarity=0.477 Sum_probs=194.7
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcc
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 371 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ 371 (614)
|+++|++++|++ ++++|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++..... .++.
T Consensus 1 l~~~~l~~~~~~-------~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~-~~~~ 72 (235)
T cd03299 1 LKVENLSKDWKE-------FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP-EKRD 72 (235)
T ss_pred CeeEeEEEEeCC-------ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh-hHcC
Confidence 468999999963 28999999999999999999999999999999999999999999999998864222 3578
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCE
Q 007178 372 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 451 (614)
Q Consensus 372 ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~v 451 (614)
+||+||++.+++.+|+.||+.+.....+....+.++++.++++.++|. +..++++.+||||||||++||||++.+|++
T Consensus 73 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~laral~~~p~l 150 (235)
T cd03299 73 ISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGID--HLLNRKPETLSGGEQQRVAIARALVVNPKI 150 (235)
T ss_pred EEEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh--hHHhcCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 999999999999999999998765554444455667788999999996 478999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 452 VYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 452 llLDEPtsgLD~~~~~~i~~~l~~~~-~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
++|||||+|||+.+++.+++.+++.. + |+|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 151 lllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 219 (235)
T cd03299 151 LLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFK 219 (235)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999999863 3 8999999999999999999999999999999999887755
No 149
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-46 Score=386.80 Aligned_cols=221 Identities=20% Similarity=0.352 Sum_probs=194.7
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 368 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~ 368 (614)
.+|+++|++|+|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .....
T Consensus 6 ~~l~i~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~ 79 (265)
T PRK10253 6 ARLRGEQLTLGYGK------YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEV 79 (265)
T ss_pred cEEEEEEEEEEECC------EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHH
Confidence 47999999999973 569999999999999999999999999999999999999999999999998754 33445
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhh-hcC---CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGR-LKN---LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 444 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~-~~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~a 444 (614)
++.+||+||++.+++.+|++||+.+... ..+ ...+..+++++++++.+++. +..++++.+||||||||++||||
T Consensus 80 ~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~Gq~qrv~lara 157 (265)
T PRK10253 80 ARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGIT--HLADQSVDTLSGGQRQRAWIAMV 157 (265)
T ss_pred hhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCH--HHhcCCcccCChHHHHHHHHHHH
Confidence 5689999999999999999999987421 111 11233456788999999996 37899999999999999999999
Q ss_pred HhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 445 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 445 l~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
++.+|+++||||||+|||+.+++.+++.|+++ + +|+|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus 158 l~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 158 LAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233 (265)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhh
Confidence 99999999999999999999999999999986 3 38999999999999999999999999999999999887653
No 150
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=1.2e-46 Score=381.37 Aligned_cols=220 Identities=21% Similarity=0.294 Sum_probs=189.9
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCC--CCCccEEEEcCeeCCCc-HHH-
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT--RTTSGTAYVQGLDIRTD-MDR- 367 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~--~p~sG~i~i~G~~i~~~-~~~- 367 (614)
|+++|++|+|++ +.+++|+||++++||+++|+||||||||||+|+|+|+. +|++|+|.++|+++... ...
T Consensus 1 l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~ 74 (243)
T TIGR01978 1 LKIKDLHVSVED------KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDER 74 (243)
T ss_pred CeEeeEEEEECC------EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHh
Confidence 468999999973 56999999999999999999999999999999999995 79999999999987542 222
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcC-------CCchhHHHHHHHHHHHcCCCCCCcccccCC-CCChhHHHHH
Q 007178 368 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKN-------LKGPALTQAVEESLKSVNLFHGGVADKQAG-KYSGGMKRRL 439 (614)
Q Consensus 368 ~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~-------~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~-~LSgG~kqrl 439 (614)
.+..++|+||++.+++.+|++||+.+...... ...++..+++.++++.+++.+ ...++++. +||||||||+
T Consensus 75 ~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~LS~G~~qrl 153 (243)
T TIGR01978 75 ARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDE-EFLNRSVNEGFSGGEKKRN 153 (243)
T ss_pred hccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCch-hhcccccccCcCHHHHHHH
Confidence 34559999999999999999999987543221 122334567889999999962 35678887 5999999999
Q ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhh-CCEEEEEeCCEEEEEcCHHHHH
Q 007178 440 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEAL-CDRLGIFVDGSLQCIGNPKELK 517 (614)
Q Consensus 440 ~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l-~dri~il~~G~l~~~g~~~~l~ 517 (614)
+|||||+.+|+++||||||+|||+.+++.++++|++++ +|+|||++||++++++.+ |||+++|++|+++..|+++++.
T Consensus 154 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 154 EILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELAK 233 (243)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHHhc
Confidence 99999999999999999999999999999999999874 689999999999999998 8999999999999999988665
Q ss_pred H
Q 007178 518 A 518 (614)
Q Consensus 518 ~ 518 (614)
.
T Consensus 234 ~ 234 (243)
T TIGR01978 234 E 234 (243)
T ss_pred c
Confidence 3
No 151
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-46 Score=384.29 Aligned_cols=208 Identities=22% Similarity=0.371 Sum_probs=187.4
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHh
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 368 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~ 368 (614)
...|+++|++|+|++ +.+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++. ..
T Consensus 10 ~~~l~i~~l~~~~~~------~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~----~~ 79 (257)
T PRK11247 10 GTPLLLNAVSKRYGE------RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA----EA 79 (257)
T ss_pred CCcEEEEEEEEEECC------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH----Hh
Confidence 346999999999973 46999999999999999999999999999999999999999999999997752 35
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCC
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 448 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~ 448 (614)
++.+||+||++.+++.+|++||+.+... ...++++.++++.+++. +..++++.+||||||||++|||||+.+
T Consensus 80 ~~~i~~v~q~~~l~~~~tv~enl~~~~~------~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgGqkqrl~laraL~~~ 151 (257)
T PRK11247 80 REDTRLMFQDARLLPWKKVIDNVGLGLK------GQWRDAALQALAAVGLA--DRANEWPAALSGGQKQRVALARALIHR 151 (257)
T ss_pred hCceEEEecCccCCCCCcHHHHHHhccc------chHHHHHHHHHHHcCCh--hHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 6789999999999998999999987421 12345788899999996 378999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHH
Q 007178 449 PKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPK 514 (614)
Q Consensus 449 p~vllLDEPtsgLD~~~~~~i~~~l~~~-~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~ 514 (614)
|+++||||||+|||+.+++.+.+.|+++ + +|+|||++||+++++..+|||+++|++|++++.|+.+
T Consensus 152 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 152 PGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999999999999885 4 4899999999999999999999999999999988764
No 152
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-46 Score=380.98 Aligned_cols=223 Identities=28% Similarity=0.458 Sum_probs=194.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCC--CC---CccEEEEcCeeCCC-
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT--RT---TSGTAYVQGLDIRT- 363 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~--~p---~sG~i~i~G~~i~~- 363 (614)
++++++|++++|++ +.+++|+||++++||+++|+||||||||||+++|+|+. +| ++|+|.++|+++..
T Consensus 4 ~~l~~~~l~~~~~~------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~ 77 (252)
T PRK14239 4 PILQVSDLSVYYNK------KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSP 77 (252)
T ss_pred ceEEEEeeEEEECC------eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCc
Confidence 36999999999973 46999999999999999999999999999999999985 46 59999999998843
Q ss_pred --cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc-hhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 007178 364 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG-PALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 438 (614)
Q Consensus 364 --~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqr 438 (614)
.....++.+||+||++.+++ +|++||+.+.....+... +..++++.++++.+++.+ .+..++.+.+||||||||
T Consensus 78 ~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14239 78 RTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQR 156 (252)
T ss_pred ccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHH
Confidence 22345678999999999887 799999988655444332 334567888999998742 024688999999999999
Q ss_pred HHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 439 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 439 l~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
++|||||+.+|+++||||||+|||+.+++.++++|++..+++|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 236 (252)
T PRK14239 157 VCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFM 236 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999987667999999999999999999999999999999999998865
Q ss_pred h
Q 007178 519 R 519 (614)
Q Consensus 519 ~ 519 (614)
.
T Consensus 237 ~ 237 (252)
T PRK14239 237 N 237 (252)
T ss_pred C
Confidence 3
No 153
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.5e-46 Score=385.18 Aligned_cols=219 Identities=23% Similarity=0.380 Sum_probs=193.0
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEEcCeeCCC---
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT---SGTAYVQGLDIRT--- 363 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~---sG~i~i~G~~i~~--- 363 (614)
++++++||++.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 3 ~~l~~~nl~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~ 76 (262)
T PRK09984 3 TIIRVEKLAKTFNQ------HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGR 76 (262)
T ss_pred cEEEEeeEEEEeCC------eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccc
Confidence 47999999999973 56999999999999999999999999999999999999986 4999999998743
Q ss_pred ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhh--------cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCC
Q 007178 364 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRL--------KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYS 432 (614)
Q Consensus 364 ---~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~--------~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LS 432 (614)
.....++.+||+||++.+++.+|++||+.+.... .+...++.+++++++++.+|+. +..++++.+||
T Consensus 77 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS 154 (262)
T PRK09984 77 LARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMV--HFAHQRVSTLS 154 (262)
T ss_pred cchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCH--HHHhCCccccC
Confidence 1234567899999999999999999999865321 0111234456789999999996 37899999999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEE
Q 007178 433 GGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCI 510 (614)
Q Consensus 433 gG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~--~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~ 510 (614)
||||||++|||||+.+|++|||||||+|||+.+++.+++.|++++ +|+|||++||+++++..+|||+++|++|++.+.
T Consensus 155 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~ 234 (262)
T PRK09984 155 GGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYD 234 (262)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999999863 489999999999999999999999999999999
Q ss_pred cCHHHH
Q 007178 511 GNPKEL 516 (614)
Q Consensus 511 g~~~~l 516 (614)
|+++++
T Consensus 235 g~~~~~ 240 (262)
T PRK09984 235 GSSQQF 240 (262)
T ss_pred CCHHHh
Confidence 998875
No 154
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=1.7e-46 Score=379.25 Aligned_cols=218 Identities=28% Similarity=0.485 Sum_probs=196.0
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcc
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 371 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ 371 (614)
++++|+++.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.... ..++.
T Consensus 1 i~i~~l~~~~~~------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~-~~~~~ 73 (237)
T TIGR00968 1 IEIANISKRFGS------FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVH-ARDRK 73 (237)
T ss_pred CEEEEEEEEECC------eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC-hhhcC
Confidence 468999999973 56999999999999999999999999999999999999999999999999885422 34678
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCE
Q 007178 372 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 451 (614)
Q Consensus 372 ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~v 451 (614)
+||+||++.+++.+|++||+.+....++.......+.++++++.+++. +..++.+.+||+|||||++|||||+.+|++
T Consensus 74 i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~lS~G~~qrl~laral~~~p~l 151 (237)
T TIGR00968 74 IGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLE--GLGDRYPNQLSGGQRQRVALARALAVEPQV 151 (237)
T ss_pred EEEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCH--hHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999998765554444444556788999999996 478999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 452 VYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 452 llLDEPtsgLD~~~~~~i~~~l~~~~-~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
++|||||+|||+.+++.+++.|++.+ + |+|||++||+++++..+|||+++|++|++++.|+.+++.+
T Consensus 152 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 152 LLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 99999999999999999999999864 3 8999999999999999999999999999999999998864
No 155
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-46 Score=400.58 Aligned_cols=213 Identities=23% Similarity=0.397 Sum_probs=190.1
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc-----H
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-----M 365 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~-----~ 365 (614)
||++ ||+|+|++ +. + |+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... .
T Consensus 1 ~l~~-~l~k~~~~------~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~ 71 (352)
T PRK11144 1 MLEL-NFKQQLGD------LC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICL 71 (352)
T ss_pred CeEE-EEEEEeCC------EE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccc
Confidence 3677 99999973 22 3 89999999999999999999999999999999999999999999987531 2
Q ss_pred HHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 007178 366 DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 445 (614)
Q Consensus 366 ~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al 445 (614)
...++++||+||++.+|+.+||+||+.+... ...+++++++++.+||. +..++++.+||||||||++|||||
T Consensus 72 ~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~------~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgGq~qRvalaraL 143 (352)
T PRK11144 72 PPEKRRIGYVFQDARLFPHYKVRGNLRYGMA------KSMVAQFDKIVALLGIE--PLLDRYPGSLSGGEKQRVAIGRAL 143 (352)
T ss_pred chhhCCEEEEcCCcccCCCCcHHHHHHhhhh------hhhHHHHHHHHHHcCCc--hhhhCCcccCCHHHHHHHHHHHHH
Confidence 3346789999999999999999999987532 12346788999999996 478999999999999999999999
Q ss_pred hCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHhc
Q 007178 446 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 520 (614)
Q Consensus 446 ~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 520 (614)
+.+|+++||||||+|||+.+++.+++.|+++ ++ |+|||++||+++++..+|||+++|++|++...|+++++.++.
T Consensus 144 ~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 144 LTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 9999999999999999999999999999986 34 899999999999999999999999999999999999987654
No 156
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-46 Score=380.17 Aligned_cols=221 Identities=26% Similarity=0.469 Sum_probs=194.0
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CccEEEEcCeeCCC--
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT-- 363 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~sG~i~i~G~~i~~-- 363 (614)
.++++|++|.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14240 3 KISVKDLDLFYGD------FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSD 76 (250)
T ss_pred eEEEEEEEEEECC------ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 4889999999973 4699999999999999999999999999999999999763 79999999998853
Q ss_pred -cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHHH
Q 007178 364 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 439 (614)
Q Consensus 364 -~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqrl 439 (614)
.....++.+||+||++.+++ +|++||+.+....++.. .++.+++++++++.+++.+ .+..++++.+||||||||+
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv 155 (250)
T PRK14240 77 IDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRL 155 (250)
T ss_pred cchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHH
Confidence 23455778999999999888 89999999865554432 2345677888899998741 0246889999999999999
Q ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 440 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 440 ~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
+|||||+.+|+++||||||+|||+.+++.+++.|++.++++|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus 156 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 234 (250)
T PRK14240 156 CIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFT 234 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999987668999999999999999999999999999999999988754
No 157
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-46 Score=380.46 Aligned_cols=222 Identities=26% Similarity=0.463 Sum_probs=194.7
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CccEEEEcCeeCCC--
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT-- 363 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~sG~i~i~G~~i~~-- 363 (614)
+++++|++|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~ 76 (250)
T PRK14262 3 IIEIENFSAYYGE------KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQ 76 (250)
T ss_pred eEEEEeeEEEeCC------ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccch
Confidence 6899999999963 5699999999999999999999999999999999999884 89999999998753
Q ss_pred -cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHHH
Q 007178 364 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 439 (614)
Q Consensus 364 -~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqrl 439 (614)
.....++.+||+||++.+++ +|++||+.+.....+.. .+..++.++++++.+++.+ ....++++.+||||||||+
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~ 155 (250)
T PRK14262 77 LDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRL 155 (250)
T ss_pred hhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHH
Confidence 12345678999999999888 89999998865544332 2334566788999999852 0246889999999999999
Q ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 440 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 440 ~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
+|||||+.+|+++||||||+|||+.+++.+++.|++.++++|||++||+++++..+|||+++|++|+++..|+++++.+.
T Consensus 156 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (250)
T PRK14262 156 CIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVER 235 (250)
T ss_pred HHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 99999999999999999999999999999999999876689999999999999999999999999999999999988653
No 158
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-46 Score=380.72 Aligned_cols=222 Identities=26% Similarity=0.460 Sum_probs=194.0
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCccEEEEcCeeCCC-
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT- 363 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-----p~sG~i~i~G~~i~~- 363 (614)
++++++|++++|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 3 ~~l~~~~l~~~~~~------~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~ 76 (251)
T PRK14251 3 NIISAKDVHLSYGN------YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGS 76 (251)
T ss_pred ceEEEEeeEEEECC------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccc
Confidence 36899999999973 569999999999999999999999999999999999997 489999999998753
Q ss_pred --cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc-hhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 007178 364 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG-PALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 438 (614)
Q Consensus 364 --~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqr 438 (614)
.....++.+||++|++.+++ .|++||+.+.....+... +..+++++++++.+++.. ....++++.+||||||||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr 155 (251)
T PRK14251 77 KMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQR 155 (251)
T ss_pred cchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHH
Confidence 22345778999999999887 699999987654444332 334567888999999841 024688999999999999
Q ss_pred HHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 439 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 439 l~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
++|||||+.+|+++||||||+|||+.+++.+++.|+++++++|||++||+++++..+|||+++|++|++++.|+++++..
T Consensus 156 ~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 235 (251)
T PRK14251 156 ICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFI 235 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999987667999999999999999999999999999999999988754
No 159
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=3.7e-47 Score=353.86 Aligned_cols=218 Identities=26% Similarity=0.434 Sum_probs=194.2
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhc
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 370 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~ 370 (614)
++.++++++.|+. .==..+++|+.||+++|+||+|||||||+|+|+|++.|.+|+|.++|+|..... -..|
T Consensus 1 ~l~L~~V~~~y~~--------~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~-P~~R 71 (231)
T COG3840 1 MLALDDVRFSYGH--------LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASP-PAER 71 (231)
T ss_pred CccccceEEeeCc--------ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCC-cccC
Confidence 3667899999963 334578999999999999999999999999999999999999999999986432 2356
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCC
Q 007178 371 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 450 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~ 450 (614)
-++++||+++||..+||++|+.++..-.-.-..+.+++++.++..+||. ++.++.+.+||||||||+++||+|+.+-+
T Consensus 72 PVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~--~~~~RLP~~LSGGqRQRvALARclvR~~P 149 (231)
T COG3840 72 PVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLA--GFLKRLPGELSGGQRQRVALARCLVREQP 149 (231)
T ss_pred ChhhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChh--hHhhhCccccCchHHHHHHHHHHHhccCC
Confidence 7999999999999999999999864321112456788999999999997 59999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh--cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 451 VVYMDEPSTGLDPASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 451 vllLDEPtsgLD~~~~~~i~~~l~~~--~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
|++||||+|+|||.-|.++..++.++ .++.|++|+||+++++.+++||++++++|||.+.|+.+++.+.
T Consensus 150 ilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 150 ILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred eEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 99999999999999999999999885 3589999999999999999999999999999999999988664
No 160
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-46 Score=382.95 Aligned_cols=224 Identities=25% Similarity=0.405 Sum_probs=196.3
Q ss_pred CCCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCccEEEEcCeeCC
Q 007178 288 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIR 362 (614)
Q Consensus 288 ~~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-----p~sG~i~i~G~~i~ 362 (614)
...+++++|++|+|++ +.+++|+||++++||++||+||||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 17 ~~~~l~~~nl~~~~~~------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~ 90 (267)
T PRK14237 17 EEIALSTKDLHVYYGK------KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDIN 90 (267)
T ss_pred CCeEEEEeeEEEEECC------eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcc
Confidence 3457999999999963 579999999999999999999999999999999999986 58999999999885
Q ss_pred C---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHH
Q 007178 363 T---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMK 436 (614)
Q Consensus 363 ~---~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~k 436 (614)
. .....++.+||+||++.+++ .|++||+.+.....+. ...+.++++.++++.+++.+ .+..++++.+||||||
T Consensus 91 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~ 169 (267)
T PRK14237 91 RKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQ 169 (267)
T ss_pred cccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHH
Confidence 3 23455778999999998888 5999999886544333 23345567888999999842 1256889999999999
Q ss_pred HHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHH
Q 007178 437 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 516 (614)
Q Consensus 437 qrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l 516 (614)
||++||||++.+|+++||||||+|||+.+++.+.++|+++++++|||++||+++++..+|||+++|++|++++.|+++++
T Consensus 170 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14237 170 QRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNI 249 (267)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999886789999999999999999999999999999999999988
Q ss_pred HH
Q 007178 517 KA 518 (614)
Q Consensus 517 ~~ 518 (614)
.+
T Consensus 250 ~~ 251 (267)
T PRK14237 250 FT 251 (267)
T ss_pred hc
Confidence 54
No 161
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-46 Score=379.56 Aligned_cols=224 Identities=24% Similarity=0.403 Sum_probs=195.8
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC-----ccEEEEcCeeCCC
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT-----SGTAYVQGLDIRT 363 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~-----sG~i~i~G~~i~~ 363 (614)
.+.++++|++|+|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 2 ~~~l~~~~l~~~~~~------~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~ 75 (251)
T PRK14249 2 DPKIKIRGVNFFYHK------HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYS 75 (251)
T ss_pred CceEEEEEEEEEECC------eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccc
Confidence 346999999999973 46999999999999999999999999999999999999997 6999999998753
Q ss_pred ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHH
Q 007178 364 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 437 (614)
Q Consensus 364 ---~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kq 437 (614)
.....++.+||+||++.+++. |++||+.+....++.. .++.+++++++++.+++.+ .+..++++.+|||||||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14249 76 PNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQ 154 (251)
T ss_pred cccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHH
Confidence 233557889999999999985 9999999865544433 2234566788888888742 13578999999999999
Q ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHH
Q 007178 438 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 517 (614)
Q Consensus 438 rl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 517 (614)
|++|||||+.+|+++||||||+|||+.+++.++++|+++++++|||++||+++++..+|||+++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998767899999999999999999999999999999999999886
Q ss_pred Hh
Q 007178 518 AR 519 (614)
Q Consensus 518 ~~ 519 (614)
..
T Consensus 235 ~~ 236 (251)
T PRK14249 235 SR 236 (251)
T ss_pred hC
Confidence 54
No 162
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=2.2e-46 Score=374.75 Aligned_cols=209 Identities=36% Similarity=0.613 Sum_probs=188.0
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcc
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 371 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ 371 (614)
++++|++|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .++.
T Consensus 1 l~l~~v~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~---~~~~ 71 (223)
T TIGR03740 1 LETKNLSKRFGK------QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK---DLHK 71 (223)
T ss_pred CEEEeEEEEECC------EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc---cccc
Confidence 468999999973 5699999999999999999999999999999999999999999999999987532 1357
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCE
Q 007178 372 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 451 (614)
Q Consensus 372 ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~v 451 (614)
+||+||++.+++.+|++||+.++....+.. ++++.++++.+|+. +..++++.+||||||||+++|||++.+|++
T Consensus 72 ~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~----~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~~rv~laral~~~p~l 145 (223)
T TIGR03740 72 IGSLIESPPLYENLTARENLKVHTTLLGLP----DSRIDEVLNIVDLT--NTGKKKAKQFSLGMKQRLGIAIALLNHPKL 145 (223)
T ss_pred EEEEcCCCCccccCCHHHHHHHHHHHcCCC----HHHHHHHHHHcCCc--HHHhhhHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999998876554422 34678899999996 378999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHH
Q 007178 452 VYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 515 (614)
Q Consensus 452 llLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~ 515 (614)
++|||||+|||+.+++.+++.|++.+ +|+|||++||+++++..+|||+++|++|++.+.|++.+
T Consensus 146 lllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 146 LILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred EEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999999864 68999999999999999999999999999999998753
No 163
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=2e-46 Score=372.56 Aligned_cols=210 Identities=22% Similarity=0.402 Sum_probs=184.8
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcc
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 371 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ 371 (614)
++++|++|.|++ .++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... ...++.
T Consensus 1 ~~~~~l~~~~~~--------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~ 71 (213)
T TIGR01277 1 LALDKVRYEYEH--------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGL-APYQRP 71 (213)
T ss_pred CeEEeeeEEeCC--------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccC-Chhccc
Confidence 368999999962 46799999999999999999999999999999999999999999999988542 235678
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCE
Q 007178 372 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 451 (614)
Q Consensus 372 ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~v 451 (614)
+||+||++.+++.+|+.||+.+..........+.+++++++++.+|+. +..++.+.+||||||||++||||++.+|++
T Consensus 72 i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~laral~~~p~l 149 (213)
T TIGR01277 72 VSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIA--DYLDRLPEQLSGGQRQRVALARCLVRPNPI 149 (213)
T ss_pred eEEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcH--HHhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999998653321111223456788899999996 478999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcC
Q 007178 452 VYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 512 (614)
Q Consensus 452 llLDEPtsgLD~~~~~~i~~~l~~~-~~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~ 512 (614)
+||||||+|||+.+++.+.+.|++. ++ |+|||++||+++++..+||++++|++|++++.|.
T Consensus 150 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 150 LLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999986 33 8999999999999999999999999999998874
No 164
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=2.3e-46 Score=399.40 Aligned_cols=213 Identities=24% Similarity=0.404 Sum_probs=189.7
Q ss_pred eEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc-----HHHhhc
Q 007178 296 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-----MDRIYT 370 (614)
Q Consensus 296 ~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~-----~~~~~~ 370 (614)
||+|+|++ +. + |+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... ....++
T Consensus 4 ~l~~~~~~------~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ 75 (354)
T TIGR02142 4 RFSKRLGD------FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75 (354)
T ss_pred EEEEEECC------EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhC
Confidence 89999973 33 4 99999999999999999999999999999999999999999999988532 123467
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCC
Q 007178 371 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 450 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~ 450 (614)
.+||+||++.+|+.+||+||+.+..... ...+.+++++++++.++|. ++.++++.+||||||||++|||||+.+|+
T Consensus 76 ~i~~v~q~~~l~~~~tv~enl~~~~~~~--~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LSgGqkqRvalAraL~~~p~ 151 (354)
T TIGR02142 76 RIGYVFQEARLFPHLSVRGNLRYGMKRA--RPSERRISFERVIELLGIG--HLLGRLPGRLSGGEKQRVAIGRALLSSPR 151 (354)
T ss_pred CeEEEecCCccCCCCcHHHHHHHHhhcc--ChhHHHHHHHHHHHHcCCh--hHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 8999999999999999999998864422 2234456789999999996 47899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHhc
Q 007178 451 VVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 520 (614)
Q Consensus 451 vllLDEPtsgLD~~~~~~i~~~l~~~-~~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 520 (614)
++||||||+|||+.+++.+++.|+++ ++ |+|||++||+++++..+|||+++|++|+++..|+++++..+.
T Consensus 152 lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 223 (354)
T TIGR02142 152 LLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223 (354)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCc
Confidence 99999999999999999999999986 34 899999999999999999999999999999999999987554
No 165
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-46 Score=378.64 Aligned_cols=221 Identities=25% Similarity=0.442 Sum_probs=193.3
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CccEEEEcCeeCCC--
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT-- 363 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~sG~i~i~G~~i~~-- 363 (614)
+++++|++|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~ 76 (249)
T PRK14253 3 KFNIENLDLFYGE------NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNI 76 (249)
T ss_pred eEEEeccEEEECC------eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEccccc
Confidence 5899999999973 5699999999999999999999999999999999999986 59999999998742
Q ss_pred cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHHHH
Q 007178 364 DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRLS 440 (614)
Q Consensus 364 ~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqrl~ 440 (614)
.....++.+||+||++.+++ .|+.||+.+.....+.. .+..++++.++++.+++.+ .+..++++.+||||||||++
T Consensus 77 ~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 155 (249)
T PRK14253 77 DVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLC 155 (249)
T ss_pred chHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHH
Confidence 34456778999999999998 79999998764443332 2334567788899888742 12467899999999999999
Q ss_pred HHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 441 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 441 ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
|||||+.+|+++||||||+|||+.+++.++++|+++++++|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus 156 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (249)
T PRK14253 156 IARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFS 233 (249)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 999999999999999999999999999999999998667999999999999999999999999999999999888754
No 166
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=4.4e-46 Score=380.90 Aligned_cols=223 Identities=23% Similarity=0.358 Sum_probs=192.7
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCee-----CCCc
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD-----IRTD 364 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~-----i~~~ 364 (614)
++++++|++++|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|++ +...
T Consensus 5 ~~l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~ 78 (258)
T PRK11701 5 PLLSVRGLTKLYGP------RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYAL 78 (258)
T ss_pred ceEEEeeeEEEcCC------ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccC
Confidence 47999999999973 469999999999999999999999999999999999999999999999988 6432
Q ss_pred -HHH----hhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHH
Q 007178 365 -MDR----IYTSMGVCPQED--LLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK 436 (614)
Q Consensus 365 -~~~----~~~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~k 436 (614)
... .++.+||+||++ .+++.+|+.||+.+.....+. ...+.++++.++++.+++.+ ...++++.+||||||
T Consensus 79 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LS~Gq~ 157 (258)
T PRK11701 79 SEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDA-ARIDDLPTTFSGGMQ 157 (258)
T ss_pred CHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCCh-hHHhCCCccCCHHHH
Confidence 211 246799999997 467788999999764322221 22345667889999999952 367899999999999
Q ss_pred HHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHH
Q 007178 437 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPK 514 (614)
Q Consensus 437 qrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~ 514 (614)
||++|||||+.+|+++||||||+|||+.+++.+++.|+++ ++ |.|||++||+++++..+||++++|++|+++..|+++
T Consensus 158 qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 237 (258)
T PRK11701 158 QRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTD 237 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999985 33 899999999999999999999999999999999998
Q ss_pred HHHHh
Q 007178 515 ELKAR 519 (614)
Q Consensus 515 ~l~~~ 519 (614)
++.+.
T Consensus 238 ~~~~~ 242 (258)
T PRK11701 238 QVLDD 242 (258)
T ss_pred HHhcC
Confidence 87643
No 167
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-46 Score=379.39 Aligned_cols=224 Identities=25% Similarity=0.415 Sum_probs=195.0
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC--C---CccEEEEcCeeCCC
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR--T---TSGTAYVQGLDIRT 363 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~--p---~sG~i~i~G~~i~~ 363 (614)
.++++++|+++.|++ +.+++|+||++++||+++|+||||||||||+++|+|+.+ | ++|+|.++|+++..
T Consensus 4 ~~~i~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 77 (253)
T PRK14261 4 EIILSTKNLNLWYGE------KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD 77 (253)
T ss_pred cceEEEeeeEEEECC------eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccc
Confidence 347999999999973 569999999999999999999999999999999999976 3 48999999998854
Q ss_pred ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHH
Q 007178 364 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 437 (614)
Q Consensus 364 ---~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kq 437 (614)
.....++.+||+||++.+++. ||+||+.+....++.. ..+.++.+.++++.+++.+ .+..++.+.+|||||||
T Consensus 78 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 156 (253)
T PRK14261 78 SGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQ 156 (253)
T ss_pred cccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHH
Confidence 234557789999999999985 9999999876554432 2344567888899988742 12468899999999999
Q ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHH
Q 007178 438 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 517 (614)
Q Consensus 438 rl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 517 (614)
|++|||||+.+|+++||||||+|||+.+++.+.+.|+++++++|||++||+++++.++|||+++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 99999999999999999999999999999999999998766799999999999999999999999999999999999886
Q ss_pred Hh
Q 007178 518 AR 519 (614)
Q Consensus 518 ~~ 519 (614)
+.
T Consensus 237 ~~ 238 (253)
T PRK14261 237 EN 238 (253)
T ss_pred hC
Confidence 53
No 168
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3e-46 Score=371.53 Aligned_cols=204 Identities=30% Similarity=0.466 Sum_probs=180.4
Q ss_pred EeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-----cHHHhh
Q 007178 295 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-----DMDRIY 369 (614)
Q Consensus 295 ~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-----~~~~~~ 369 (614)
-||+|+|++ +.+ |+||++++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.. .....+
T Consensus 4 ~~l~~~~~~------~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 74 (214)
T cd03297 4 VDIEKRLPD------FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ 74 (214)
T ss_pred eeeeEecCC------eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHh
Confidence 399999974 334 99999999 9999999999999999999999999999999999998752 123456
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCC
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 449 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p 449 (614)
+.+||+||++.+++.+|++||+.+..... .....+++++++++.+++. +..++++.+||||||||++||+||+.+|
T Consensus 75 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~~p 150 (214)
T cd03297 75 RKIGLVFQQYALFPHLNVRENLAFGLKRK--RNREDRISVDELLDLLGLD--HLLNRYPAQLSGGEKQRVALARALAAQP 150 (214)
T ss_pred hcEEEEecCCccCCCCCHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCH--hHhhcCcccCCHHHHHHHHHHHHHhcCC
Confidence 78999999999999999999998764322 2233456788999999996 3689999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEc
Q 007178 450 KVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 511 (614)
Q Consensus 450 ~vllLDEPtsgLD~~~~~~i~~~l~~~-~~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g 511 (614)
+++||||||+|||+.+++.++++|+++ ++ |+|||++||++++++.+|||+++|++|++++.|
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 151 ELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999986 44 899999999999999999999999999998765
No 169
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-46 Score=377.98 Aligned_cols=222 Identities=27% Similarity=0.433 Sum_probs=193.4
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC-----ccEEEEcCeeCCC--
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT-----SGTAYVQGLDIRT-- 363 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~-----sG~i~i~G~~i~~-- 363 (614)
+++++|++|.|++ +.+++|+||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 77 (252)
T PRK14272 4 LLSAQDVNIYYGD------KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPR 77 (252)
T ss_pred EEEEeeeEEEECC------EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCc
Confidence 6899999999973 57999999999999999999999999999999999999875 8999999998753
Q ss_pred -cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHHH
Q 007178 364 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 439 (614)
Q Consensus 364 -~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqrl 439 (614)
.....++.+||+||++.+++.+|+.||+.+.....+.. .++..+.++++++.+++.. .+..++++++||||||||+
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv 157 (252)
T PRK14272 78 VDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRL 157 (252)
T ss_pred cCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHH
Confidence 23355678999999999999999999998765433322 2334566777778777631 1246889999999999999
Q ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 440 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 440 ~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
+|||||+.+|+++||||||+|||+.+++.+.+.|++.++++|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus 158 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 236 (252)
T PRK14272 158 CIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFT 236 (252)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999987668999999999999999999999999999999999998865
No 170
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.1e-46 Score=381.44 Aligned_cols=223 Identities=26% Similarity=0.417 Sum_probs=195.3
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCccEEEEcCeeCCC
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT 363 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-----p~sG~i~i~G~~i~~ 363 (614)
..+++++|+++.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 23 ~~~l~~~nl~~~~~~------~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~ 96 (272)
T PRK14236 23 QTALEVRNLNLFYGD------KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYD 96 (272)
T ss_pred CcEEEEEEEEEEECC------eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcc
Confidence 347999999999963 469999999999999999999999999999999999987 489999999998853
Q ss_pred ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHH
Q 007178 364 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 437 (614)
Q Consensus 364 ---~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kq 437 (614)
.....++.+||+||++.+++. |++||+.+.....+.. .+..+++++++++.+++.+ .+..++++.+|||||||
T Consensus 97 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 175 (272)
T PRK14236 97 KKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQ 175 (272)
T ss_pred cccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHH
Confidence 233557889999999999986 9999998765544432 2334567888999999852 02468899999999999
Q ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHH
Q 007178 438 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 517 (614)
Q Consensus 438 rl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 517 (614)
|++|||||+.+|+++||||||+|||+.+++.+++.|+++++++|||++||+++++.++|||+++|++|+++..|+++++.
T Consensus 176 rv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 176 RLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLF 255 (272)
T ss_pred HHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHh
Confidence 99999999999999999999999999999999999998766899999999999999999999999999999999998875
Q ss_pred H
Q 007178 518 A 518 (614)
Q Consensus 518 ~ 518 (614)
+
T Consensus 256 ~ 256 (272)
T PRK14236 256 T 256 (272)
T ss_pred c
Confidence 4
No 171
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-45 Score=383.22 Aligned_cols=224 Identities=25% Similarity=0.403 Sum_probs=194.5
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCccEEEEcCeeCCC
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT 363 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-----p~sG~i~i~G~~i~~ 363 (614)
.+.++++|++++|++ +.+++|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 37 ~~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~ 110 (286)
T PRK14275 37 KPHVVAKNFSIYYGE------FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYG 110 (286)
T ss_pred ceEEEEeeeEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhh
Confidence 457999999999973 469999999999999999999999999999999999864 499999999998753
Q ss_pred ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHH
Q 007178 364 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 437 (614)
Q Consensus 364 ---~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kq 437 (614)
.....++.+||+||++.+++. |+.||+.+.....+.. ....++++.++++.+++.+ .+..++++.+|||||||
T Consensus 111 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~q 189 (286)
T PRK14275 111 KFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQ 189 (286)
T ss_pred cccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHH
Confidence 223457789999999998885 9999999865544432 2334567788899998741 13568899999999999
Q ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHH
Q 007178 438 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 517 (614)
Q Consensus 438 rl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 517 (614)
|++|||||+.+|+++||||||+|||+.+++.+++.|++.++++|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 190 rv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 190 RLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998766799999999999999999999999999999999999886
Q ss_pred Hh
Q 007178 518 AR 519 (614)
Q Consensus 518 ~~ 519 (614)
++
T Consensus 270 ~~ 271 (286)
T PRK14275 270 TN 271 (286)
T ss_pred hC
Confidence 53
No 172
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.8e-46 Score=379.07 Aligned_cols=232 Identities=25% Similarity=0.399 Sum_probs=205.1
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-C----CccEEEEcCeeCCCcHH
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-T----TSGTAYVQGLDIRTDMD 366 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-p----~sG~i~i~G~~i~~~~~ 366 (614)
++++||+..|....+ ...||+||||++++||++||+|.+|||||||.+.|.|+++ | ++|+|.++|+|+.+-.+
T Consensus 2 L~v~nL~v~f~~~~g--~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~ 79 (316)
T COG0444 2 LEVKNLSVSFPTDAG--VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79 (316)
T ss_pred ceEeeeEEEEecCCc--cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCH
Confidence 689999999975322 4689999999999999999999999999999999999997 4 67999999998864222
Q ss_pred ----Hhh-cceEEEcCCC--CCCCCCCHHHHHHHHhhhcC-C-CchhHHHHHHHHHHHcCCCCC-CcccccCCCCChhHH
Q 007178 367 ----RIY-TSMGVCPQED--LLWETLTGREHLLFYGRLKN-L-KGPALTQAVEESLKSVNLFHG-GVADKQAGKYSGGMK 436 (614)
Q Consensus 367 ----~~~-~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~~-~-~~~~~~~~~~~~l~~~~L~~~-~~~~~~~~~LSgG~k 436 (614)
++| +.|+++||++ .|.|-+|+.+.+.-..+.+. . .+++.++++.++|+.+|+.+. ...+.++++||||||
T Consensus 80 ~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMr 159 (316)
T COG0444 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMR 159 (316)
T ss_pred HHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHH
Confidence 334 5799999995 68999999999988777643 3 456778899999999999851 266999999999999
Q ss_pred HHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHH
Q 007178 437 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPK 514 (614)
Q Consensus 437 qrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~--~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~ 514 (614)
||+.||+||+.+|++||.||||++||+..+.++.++|++++ .|.|+|++|||+..+.++||||+||..|++++.|+.+
T Consensus 160 QRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~ 239 (316)
T COG0444 160 QRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVE 239 (316)
T ss_pred HHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHH
Confidence 99999999999999999999999999999999999999864 4999999999999999999999999999999999999
Q ss_pred HHHHhcCCcEE
Q 007178 515 ELKARYGGSYV 525 (614)
Q Consensus 515 ~l~~~~~~~~~ 525 (614)
++.+...+.|+
T Consensus 240 ~i~~~P~HPYT 250 (316)
T COG0444 240 EIFKNPKHPYT 250 (316)
T ss_pred HHhcCCCChHH
Confidence 99888777764
No 173
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.1e-46 Score=374.13 Aligned_cols=220 Identities=24% Similarity=0.446 Sum_probs=187.6
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhhc
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 370 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~~ 370 (614)
++++|+++.|+++ ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .....++
T Consensus 1 i~~~~l~~~~~~~----~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 76 (234)
T cd03251 1 VEFKNVTFRYPGD----GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRR 76 (234)
T ss_pred CEEEEEEEEeCCC----CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHh
Confidence 4689999999742 2369999999999999999999999999999999999999999999999998753 3345677
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHH-----HHHHHHHHc--CCCCCCcccccCCCCChhHHHHHHHHH
Q 007178 371 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ-----AVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLSVAI 443 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~~~LSgG~kqrl~ia~ 443 (614)
.+||+||++.+++ .|++||+.+..... ...+..+ .+++.++.+ ++. ...++++.+||||||||++|||
T Consensus 77 ~i~~~~q~~~~~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~~~~~~LS~G~~qrv~la~ 151 (234)
T cd03251 77 QIGLVSQDVFLFN-DTVAENIAYGRPGA--TREEVEEAARAANAHEFIMELPEGYD--TVIGERGVKLSGGQRQRIAIAR 151 (234)
T ss_pred hEEEeCCCCeecc-ccHHHHhhccCCCC--CHHHHHHHHHHcCcHHHHHhcccCcc--eeeccCCCcCCHHHHHHHHHHH
Confidence 8999999999887 69999998754321 1111111 244556665 564 3678889999999999999999
Q ss_pred HHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHhcC
Q 007178 444 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG 521 (614)
Q Consensus 444 al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~ 521 (614)
||+.+|+++||||||+|||+.+++.+++.|++..+|+|||++||++++++. |||+++|++|+++..|+++++...++
T Consensus 152 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~ 228 (234)
T cd03251 152 ALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN-ADRIVVLEDGKIVERGTHEELLAQGG 228 (234)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEecCCeEeeeCCHHHHHHcCc
Confidence 999999999999999999999999999999988778999999999999986 99999999999999999998876643
No 174
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-45 Score=382.21 Aligned_cols=222 Identities=22% Similarity=0.437 Sum_probs=194.1
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCccEEEEcCeeCCC
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT 363 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-----p~sG~i~i~G~~i~~ 363 (614)
.++++++|++|+|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 37 ~~~l~i~~l~~~~~~------~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~ 110 (285)
T PRK14254 37 ETVIEARDLNVFYGD------EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYD 110 (285)
T ss_pred CceEEEEEEEEEECC------EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccc
Confidence 457999999999973 569999999999999999999999999999999999987 699999999998743
Q ss_pred ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 007178 364 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 438 (614)
Q Consensus 364 ---~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqr 438 (614)
.....++.+||+||++.+++. |++||+.+.....+.. .+.+++++++++.+++.+ .+..++++.+||||||||
T Consensus 111 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qr 188 (285)
T PRK14254 111 ADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYD-GDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQR 188 (285)
T ss_pred cccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCCc-HHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHH
Confidence 234567789999999988886 9999998876554433 244567899999999842 025688999999999999
Q ss_pred HHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEE-EEeCCEEEEEcCHHHHH
Q 007178 439 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLG-IFVDGSLQCIGNPKELK 517 (614)
Q Consensus 439 l~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~-il~~G~l~~~g~~~~l~ 517 (614)
++|||||+.+|+++||||||+|||+.+++.+++.|+++++++|||++||+++++..+|||++ +|++|+++..|+++++.
T Consensus 189 v~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 189 LCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999997656899999999999999999975 57999999999988875
Q ss_pred H
Q 007178 518 A 518 (614)
Q Consensus 518 ~ 518 (614)
+
T Consensus 269 ~ 269 (285)
T PRK14254 269 E 269 (285)
T ss_pred h
Confidence 4
No 175
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=3.9e-46 Score=376.35 Aligned_cols=218 Identities=23% Similarity=0.426 Sum_probs=184.2
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhhc
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 370 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~~ 370 (614)
++++|+++.|++. ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .....++
T Consensus 1 i~~~~l~~~~~~~----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (237)
T cd03252 1 ITFEHVRFRYKPD----GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRR 76 (237)
T ss_pred CEEEEEEEecCCC----CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhh
Confidence 4689999999642 2569999999999999999999999999999999999999999999999998753 3345577
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHH-----HHHHHHHHc--CCCCCCcccccCCCCChhHHHHHHHHH
Q 007178 371 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ-----AVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLSVAI 443 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~~~LSgG~kqrl~ia~ 443 (614)
.+||+||++.+++ .|++||+.+... +.......+ .+.++++.+ ++. ...++++.+||||||||++|||
T Consensus 77 ~i~~~~q~~~~~~-~tv~~nl~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~~~--~~~~~~~~~LSgG~~qrv~lar 151 (237)
T cd03252 77 QVGVVLQENVLFN-RSIRDNIALADP--GMSMERVIEAAKLAGAHDFISELPEGYD--TIVGEQGAGLSGGQRQRIAIAR 151 (237)
T ss_pred cEEEEcCCchhcc-chHHHHhhccCC--CCCHHHHHHHHHHcCcHHHHHhCccccc--chhhcCCCcCCHHHHHHHHHHH
Confidence 8999999998876 699999987432 111111111 223445555 443 3567899999999999999999
Q ss_pred HHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 444 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 444 al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
||+.+|+++||||||+|||+.+++.+++.|+++.+|+|||++||++++++ .|||+++|++|+++..|+++++.++
T Consensus 152 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (237)
T cd03252 152 ALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK-NADRIIVMEKGRIVEQGSHDELLAE 226 (237)
T ss_pred HHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEEcCHHHHHhc
Confidence 99999999999999999999999999999998767999999999999996 5999999999999999999988765
No 176
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-45 Score=376.23 Aligned_cols=221 Identities=27% Similarity=0.447 Sum_probs=191.6
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCccEEEEcCeeCCC---
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT--- 363 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-----p~sG~i~i~G~~i~~--- 363 (614)
-+++|++++|++ +.+++|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 6 ~~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 79 (251)
T PRK14244 6 ASVKNLNLWYGS------KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79 (251)
T ss_pred EEeeeEEEEECC------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhccc
Confidence 468999999963 579999999999999999999999999999999999986 479999999998743
Q ss_pred cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC--CchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHHH
Q 007178 364 DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL--KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 439 (614)
Q Consensus 364 ~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~--~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqrl 439 (614)
.....++.+||+||++.+++. |++||+.+....++. ...+.++.+.++++.+|+.+ ....++.+.+||||||||+
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv 158 (251)
T PRK14244 80 NVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRL 158 (251)
T ss_pred chHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHH
Confidence 123457789999999999886 999999876444432 12344567888999999952 0135788999999999999
Q ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 440 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 440 ~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
+|||||+.+|+++||||||+|||+.+++.+.+.|+++++|+|||++||+++++..+|||+++|++|+++..|+++++.+.
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 238 (251)
T PRK14244 159 CIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKN 238 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999999876789999999999999999999999999999999999887653
No 177
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-45 Score=379.28 Aligned_cols=224 Identities=24% Similarity=0.432 Sum_probs=192.9
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCccEEEEcCeeCCC
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT 363 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-----p~sG~i~i~G~~i~~ 363 (614)
.++++++|+++.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 22 ~~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~ 95 (271)
T PRK14238 22 KVVFDTQNLNLWYGE------DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFD 95 (271)
T ss_pred ceEEEEeeeEEEECC------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccc
Confidence 347999999999973 469999999999999999999999999999999999997 699999999998742
Q ss_pred ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc-hhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHH
Q 007178 364 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG-PALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 437 (614)
Q Consensus 364 ---~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kq 437 (614)
.....++.+||+||++.+++. |++||+.+.....+... +..++.+.++++.+++.+ .+..++++.+|||||||
T Consensus 96 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~q 174 (271)
T PRK14238 96 KSYSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQ 174 (271)
T ss_pred ccccHHHHhhhEEEEecCCccccc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHH
Confidence 234557789999999998884 99999988654433322 233455677787775421 12568899999999999
Q ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHH
Q 007178 438 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 517 (614)
Q Consensus 438 rl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 517 (614)
|++|||||+.+|+++||||||+|||+.+++.+.+.|+++++++|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 175 rv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 254 (271)
T PRK14238 175 RLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIF 254 (271)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998766899999999999999999999999999999999998885
Q ss_pred Hh
Q 007178 518 AR 519 (614)
Q Consensus 518 ~~ 519 (614)
+.
T Consensus 255 ~~ 256 (271)
T PRK14238 255 SN 256 (271)
T ss_pred cC
Confidence 43
No 178
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.4e-47 Score=352.24 Aligned_cols=222 Identities=25% Similarity=0.459 Sum_probs=204.6
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC------
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT------ 363 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~------ 363 (614)
+.++++|+.|+||. ..+|+++|++.++|+++.|+|.+||||||++|||.=+.+|++|.|.++|+.++.
T Consensus 5 ~~l~v~dlHK~~G~------~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G 78 (256)
T COG4598 5 NALEVEDLHKRYGE------HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDG 78 (256)
T ss_pred cceehhHHHhhccc------chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCC
Confidence 46899999999984 679999999999999999999999999999999999999999999999988731
Q ss_pred --------cHHHhhcceEEEcCCCCCCCCCCHHHHHHHH-hhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChh
Q 007178 364 --------DMDRIYTSMGVCPQEDLLWETLTGREHLLFY-GRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG 434 (614)
Q Consensus 364 --------~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~-~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG 434 (614)
+..++|.++|++||+.+||..|||.||+.-. ...-|.++.+..++++.+|.++|+.+ .++.++..||||
T Consensus 79 ~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~e--k~~~YP~~LSGG 156 (256)
T COG4598 79 QLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAE--KADAYPAHLSGG 156 (256)
T ss_pred CeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchh--hhhcCccccCch
Confidence 2345778899999999999999999998653 34557788899999999999999974 789999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCH
Q 007178 435 MKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 513 (614)
Q Consensus 435 ~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~ 513 (614)
|+||++|||||+.+|+++++|||||+|||+-..++.+.++++ .+|+|.+++||.|..+...+++++++++|++.+.|+|
T Consensus 157 QQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P 236 (256)
T COG4598 157 QQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPP 236 (256)
T ss_pred HHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCCh
Confidence 999999999999999999999999999999999999999996 5799999999999999999999999999999999999
Q ss_pred HHHHHh
Q 007178 514 KELKAR 519 (614)
Q Consensus 514 ~~l~~~ 519 (614)
+++..+
T Consensus 237 ~qvf~n 242 (256)
T COG4598 237 EQVFGN 242 (256)
T ss_pred HHHhcC
Confidence 998654
No 179
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-45 Score=377.31 Aligned_cols=222 Identities=27% Similarity=0.427 Sum_probs=193.7
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CccEEEEcCeeCCC-
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT- 363 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~sG~i~i~G~~i~~- 363 (614)
..++++|+++.|++ +.+++|+||++++||+++|+|+||||||||+|+|+|+++| ++|+|.++|+++..
T Consensus 6 ~~l~~~~l~~~~~~------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 79 (259)
T PRK14260 6 PAIKVKDLSFYYNT------SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDP 79 (259)
T ss_pred ceEEEEEEEEEECC------eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecccc
Confidence 36999999999973 4699999999999999999999999999999999999985 58999999998743
Q ss_pred --cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcC-CCchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 007178 364 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKN-LKGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 438 (614)
Q Consensus 364 --~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqr 438 (614)
.....++++||+||++.+++ +|++||+.+....++ .+..+..+.++++++.+++.+ .+..++.+.+||||||||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 158 (259)
T PRK14260 80 RININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQR 158 (259)
T ss_pred ccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHH
Confidence 22455678999999999998 899999987654433 233344567788999998841 125688999999999999
Q ss_pred HHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEe-----CCEEEEEcCH
Q 007178 439 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV-----DGSLQCIGNP 513 (614)
Q Consensus 439 l~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~-----~G~l~~~g~~ 513 (614)
++|||||+.+|+++||||||+|||+.+++.+++.|++.++++|||++||+++++..+|||+++|+ +|++++.|++
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~ 238 (259)
T PRK14260 159 LCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVT 238 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCH
Confidence 99999999999999999999999999999999999987667999999999999999999999998 5999999999
Q ss_pred HHHHH
Q 007178 514 KELKA 518 (614)
Q Consensus 514 ~~l~~ 518 (614)
+++.+
T Consensus 239 ~~~~~ 243 (259)
T PRK14260 239 TQIFS 243 (259)
T ss_pred HHHhc
Confidence 98854
No 180
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=5.8e-46 Score=414.37 Aligned_cols=219 Identities=26% Similarity=0.432 Sum_probs=194.2
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc-H-HH
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-M-DR 367 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~-~-~~ 367 (614)
++++++|++|+|++ +.+++|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++... . ..
T Consensus 3 ~~i~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~ 76 (501)
T PRK10762 3 ALLQLKGIDKAFPG------VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSS 76 (501)
T ss_pred ceEEEeeeEEEeCC------eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHH
Confidence 46999999999973 5699999999999999999999999999999999999999999999999988532 2 22
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhc---C-CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 007178 368 IYTSMGVCPQEDLLWETLTGREHLLFYGRLK---N-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 443 (614)
Q Consensus 368 ~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~---~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~ 443 (614)
.++.+||+||++.+++.+||+||+.+..... + .+.++.+++++++++.+|+.+ ..++++++||||||||++||+
T Consensus 77 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~LSgG~~qrv~la~ 154 (501)
T PRK10762 77 QEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRF--SSDKLVGELSIGEQQMVEIAK 154 (501)
T ss_pred HhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCC--CccCchhhCCHHHHHHHHHHH
Confidence 3567999999999999999999998764322 1 223344567889999999973 679999999999999999999
Q ss_pred HHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHH
Q 007178 444 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 516 (614)
Q Consensus 444 al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l 516 (614)
||+.+|+++||||||+|||+.+++.++++|+++ ++|+|||++|||++++..+|||+++|++|+++..|+++++
T Consensus 155 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 155 VLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred HHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 999999999999999999999999999999986 4589999999999999999999999999999999987654
No 181
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-45 Score=377.91 Aligned_cols=223 Identities=23% Similarity=0.401 Sum_probs=193.2
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCccEEEEcCeeCCC
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT 363 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-----p~sG~i~i~G~~i~~ 363 (614)
.++++++|++|.|++ +.+++|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 8 ~~~l~i~~v~~~~~~------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 81 (264)
T PRK14243 8 ETVLRTENLNVYYGS------FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYA 81 (264)
T ss_pred ceEEEEeeeEEEECC------EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccc
Confidence 347999999999973 469999999999999999999999999999999999986 489999999998742
Q ss_pred ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 007178 364 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 438 (614)
Q Consensus 364 ---~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqr 438 (614)
.....++++||+||++.+++. |++||+.+.....+.. .+.+++++++++.+++.+ .+..++++.+||||||||
T Consensus 82 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 82 PDVDPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARINGYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQR 159 (264)
T ss_pred cccChHHHhhhEEEEccCCccccc-cHHHHHHhhhhhcCcc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHH
Confidence 234557789999999998884 9999998865443322 233456777888888741 024688999999999999
Q ss_pred HHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEe---------CCEEEE
Q 007178 439 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV---------DGSLQC 509 (614)
Q Consensus 439 l~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~---------~G~l~~ 509 (614)
++|||||+.+|+++||||||+|||+.+++.++++|+++++++|||++||+++++..+|||+++|+ +|++++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999987667899999999999999999999998 899999
Q ss_pred EcCHHHHHHh
Q 007178 510 IGNPKELKAR 519 (614)
Q Consensus 510 ~g~~~~l~~~ 519 (614)
.|+++++.+.
T Consensus 240 ~~~~~~~~~~ 249 (264)
T PRK14243 240 FDRTEKIFNS 249 (264)
T ss_pred eCCHHHHHhC
Confidence 9999998653
No 182
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-45 Score=373.52 Aligned_cols=223 Identities=27% Similarity=0.463 Sum_probs=192.7
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC--C---CccEEEEcCeeCCC-
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR--T---TSGTAYVQGLDIRT- 363 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~--p---~sG~i~i~G~~i~~- 363 (614)
.+++++|++|+|++ +.+++|+||++++||++||+||||||||||+++|+|+.+ | ++|+|.++|+++..
T Consensus 4 ~~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~ 77 (252)
T PRK14255 4 KIITSSDVHLFYGK------FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAP 77 (252)
T ss_pred ceEEEEeEEEEECC------eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccc
Confidence 46999999999973 569999999999999999999999999999999999975 5 59999999998853
Q ss_pred --cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc-hhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 007178 364 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG-PALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 438 (614)
Q Consensus 364 --~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqr 438 (614)
.....++.+||+||++.+++ .|++||+.+....++... +..++++.+.++.+++.. .+..++.+.+||||||||
T Consensus 78 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qr 156 (252)
T PRK14255 78 NEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQR 156 (252)
T ss_pred cccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHH
Confidence 23355678999999999988 699999988655444322 223456777888887731 125688999999999999
Q ss_pred HHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 439 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 439 l~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
++|||||+.+|+++||||||+|||+.+++.+.+.|++.+++.|||++||+++++.++|||+++|++|+++..|++.++..
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 236 (252)
T PRK14255 157 VCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFL 236 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999987667899999999999999999999999999999999988765
Q ss_pred h
Q 007178 519 R 519 (614)
Q Consensus 519 ~ 519 (614)
.
T Consensus 237 ~ 237 (252)
T PRK14255 237 N 237 (252)
T ss_pred C
Confidence 3
No 183
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-45 Score=375.07 Aligned_cols=225 Identities=23% Similarity=0.402 Sum_probs=195.8
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcC------eeCC
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG------LDIR 362 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G------~~i~ 362 (614)
.+++.++|++|+|++ +.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| +++.
T Consensus 8 ~~~i~~~~~~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~ 81 (257)
T PRK14246 8 EDVFNISRLYLYIND------KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIF 81 (257)
T ss_pred hhheeeeeEEEecCC------ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccc
Confidence 357999999999974 5699999999999999999999999999999999999999997777666 4443
Q ss_pred C-cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 007178 363 T-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 438 (614)
Q Consensus 363 ~-~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqr 438 (614)
. .....++.+||+||++.+++.+|++||+.+.....+.. .++.++++.++++.+++.+ .+..++.+..||||||||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qr 161 (257)
T PRK14246 82 QIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQR 161 (257)
T ss_pred cCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHH
Confidence 2 33456788999999999999999999999875443332 3445567889999999952 024678999999999999
Q ss_pred HHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 439 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 439 l~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
++|||||+.+|+++||||||+|||+.+++.+++.|.++++++|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 162 l~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~~ 241 (257)
T PRK14246 162 LTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFT 241 (257)
T ss_pred HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999999987667999999999999999999999999999999999998865
Q ss_pred h
Q 007178 519 R 519 (614)
Q Consensus 519 ~ 519 (614)
.
T Consensus 242 ~ 242 (257)
T PRK14246 242 S 242 (257)
T ss_pred C
Confidence 4
No 184
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9e-46 Score=413.32 Aligned_cols=219 Identities=21% Similarity=0.340 Sum_probs=195.0
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEEcCeeCCCcH--
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT--TSGTAYVQGLDIRTDM-- 365 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p--~sG~i~i~G~~i~~~~-- 365 (614)
++++++|++|+|++ +.+++|+||++++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++....
T Consensus 4 ~~l~~~nl~~~~~~------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~ 77 (506)
T PRK13549 4 YLLEMKNITKTFGG------VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIR 77 (506)
T ss_pred ceEEEeeeEEEeCC------eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHH
Confidence 47999999999973 5699999999999999999999999999999999999996 8999999999985422
Q ss_pred HHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhc--C-CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHH
Q 007178 366 DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK--N-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 442 (614)
Q Consensus 366 ~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~--~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia 442 (614)
...++.+||+||++.+++.+||+||+.+....+ + .+.++..++++++++.+++. +..++++.+||||||||++||
T Consensus 78 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGqkqrv~la 155 (506)
T PRK13549 78 DTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLD--INPATPVGNLGLGQQQLVEIA 155 (506)
T ss_pred HHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCC--CCcccchhhCCHHHHHHHHHH
Confidence 234578999999999999999999998865432 1 23344556789999999996 478999999999999999999
Q ss_pred HHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHH
Q 007178 443 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 516 (614)
Q Consensus 443 ~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l 516 (614)
|||+.+|+++||||||+|||+.+++.++++|+++ ++|+|||++||+++++..+|||+++|++|+++..|+++++
T Consensus 156 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 156 KALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccC
Confidence 9999999999999999999999999999999986 4689999999999999999999999999999999987654
No 185
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-45 Score=377.66 Aligned_cols=223 Identities=24% Similarity=0.404 Sum_probs=194.5
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CccEEEEcCeeCCCc
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRTD 364 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~sG~i~i~G~~i~~~ 364 (614)
+.++++|++|+|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...
T Consensus 20 ~~l~i~nl~~~~~~------~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~ 93 (276)
T PRK14271 20 PAMAAVNLTLGFAG------KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNY 93 (276)
T ss_pred cEEEEeeEEEEECC------EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEcccc
Confidence 46899999999973 5799999999999999999999999999999999999986 799999999987542
Q ss_pred --HHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcC-CCchhHHHHHHHHHHHcCCCCC--CcccccCCCCChhHHHHH
Q 007178 365 --MDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKN-LKGPALTQAVEESLKSVNLFHG--GVADKQAGKYSGGMKRRL 439 (614)
Q Consensus 365 --~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~L~~~--~~~~~~~~~LSgG~kqrl 439 (614)
....++.++|+||++.+++ +|++||+.+.....+ .+.++.++++.++++.+++.+. +..++.+.+||||||||+
T Consensus 94 ~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl 172 (276)
T PRK14271 94 RDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLL 172 (276)
T ss_pred chhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHH
Confidence 3356778999999999988 799999987643322 2334445567888999998520 135788999999999999
Q ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 440 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 440 ~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
+|||||+.+|+++||||||+|||+.+++.+.+.|+++++++|||++||+++++..+|||+++|++|+++..|+++++.+.
T Consensus 173 ~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 252 (276)
T PRK14271 173 CLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252 (276)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999999999999876568999999999999999999999999999999999988653
No 186
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-45 Score=378.82 Aligned_cols=219 Identities=23% Similarity=0.346 Sum_probs=190.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC--------ccEEEEcCeeCC
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT--------SGTAYVQGLDIR 362 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~--------sG~i~i~G~~i~ 362 (614)
+++++|++++|++ +.+++|+||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++.
T Consensus 1 ml~~~nl~~~~~~------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~ 74 (272)
T PRK13547 1 MLTADHLHVARRH------RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLA 74 (272)
T ss_pred CeEEEEEEEEECC------EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcc
Confidence 4789999999963 56999999999999999999999999999999999999998 999999999885
Q ss_pred C-cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhc----CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHH
Q 007178 363 T-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK----NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKR 437 (614)
Q Consensus 363 ~-~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~----~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kq 437 (614)
. ...+.++.++|+||++.++..+|++||+.+..... +...++..++++++++.+++. +..++++.+|||||||
T Consensus 75 ~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~q 152 (272)
T PRK13547 75 AIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGAT--ALVGRDVTTLSGGELA 152 (272)
T ss_pred cCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcH--hhhcCCcccCCHHHHH
Confidence 4 33445567999999987666689999998753211 111233456788999999997 3789999999999999
Q ss_pred HHHHHHHHh---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHhhCCEEEEEeCCE
Q 007178 438 RLSVAISLI---------GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGS 506 (614)
Q Consensus 438 rl~ia~al~---------~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~-g~tIil~TH~~~e~~~l~dri~il~~G~ 506 (614)
|++|||||+ .+|+++||||||+|||+.+++.++++|+++ ++ |+|||++||+++++..+|||+++|++|+
T Consensus 153 rv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~ 232 (272)
T PRK13547 153 RVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGA 232 (272)
T ss_pred HHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCe
Confidence 999999999 599999999999999999999999999986 44 8999999999999999999999999999
Q ss_pred EEEEcCHHHHH
Q 007178 507 LQCIGNPKELK 517 (614)
Q Consensus 507 l~~~g~~~~l~ 517 (614)
++..|+++++.
T Consensus 233 i~~~g~~~~~~ 243 (272)
T PRK13547 233 IVAHGAPADVL 243 (272)
T ss_pred EEEecCHHHHc
Confidence 99999988763
No 187
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-45 Score=369.69 Aligned_cols=219 Identities=22% Similarity=0.423 Sum_probs=183.7
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhh
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 369 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~ 369 (614)
.++++|+++.|++ ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .....+
T Consensus 2 ~l~~~~l~~~~~~-----~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (229)
T cd03254 2 EIEFENVNFSYDE-----KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLR 76 (229)
T ss_pred eEEEEEEEEecCC-----CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHh
Confidence 3789999999963 2469999999999999999999999999999999999999999999999998753 334567
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHH-----HHHHHHHHc--CCCCCCcccccCCCCChhHHHHHHHH
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ-----AVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLSVA 442 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~~~LSgG~kqrl~ia 442 (614)
+.+||+||++.+++. |++||+.++.... ...+..+ .+++.++.+ ++. ...++++.+||||||||++||
T Consensus 77 ~~i~~~~q~~~~~~~-tv~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~LS~G~~~rv~la 151 (229)
T cd03254 77 SMIGVVLQDTFLFSG-TIMENIRLGRPNA--TDEEVIEAAKEAGAHDFIMKLPNGYD--TVLGENGGNLSQGERQLLAIA 151 (229)
T ss_pred hhEEEecCCchhhhh-HHHHHHhccCCCC--CHHHHHHHHHHhChHHHHHhCccccc--CHhhcCCCcCCHHHHHHHHHH
Confidence 789999999998886 9999998753211 1111111 122333333 443 245677899999999999999
Q ss_pred HHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHhc
Q 007178 443 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 520 (614)
Q Consensus 443 ~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 520 (614)
+||+.+|+++||||||+|||+.+++.+++.|++.++|+|||++||++++++. ||++++|++|++...|+.+++.+++
T Consensus 152 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~~~~~~~~~~~~ 228 (229)
T cd03254 152 RAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKN-ADKILVLDDGKIIEEGTHDELLAKK 228 (229)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEEeCCeEEEeCCHHHHHhhC
Confidence 9999999999999999999999999999999987679999999999999975 9999999999999999998887654
No 188
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=2.1e-45 Score=368.55 Aligned_cols=215 Identities=28% Similarity=0.431 Sum_probs=186.8
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEEcCeeCCCcHHH
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR---TTSGTAYVQGLDIRTDMDR 367 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~---p~sG~i~i~G~~i~~~~~~ 367 (614)
.+.++|++++|++.+ ..+.+++|+||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.. ..
T Consensus 3 ~~~~~~~~~~~~~~~--~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~--~~ 78 (226)
T cd03234 3 VLPWWDVGLKAKNWN--KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP--DQ 78 (226)
T ss_pred cceeecceeeeecCc--cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECCh--HH
Confidence 367899999997531 12679999999999999999999999999999999999999 999999999998752 35
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC---CchhHHHHHHH-HHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 007178 368 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL---KGPALTQAVEE-SLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 443 (614)
Q Consensus 368 ~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~---~~~~~~~~~~~-~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~ 443 (614)
.++.+||+||++.+++.+|++||+.+.....+. ..+....++++ .++.+++. +..++.+.+||||||||+++||
T Consensus 79 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~lar 156 (226)
T cd03234 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALT--RIGGNLVKGISGGERRRVSIAV 156 (226)
T ss_pred hcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcch--hhhcccccCcCHHHHHHHHHHH
Confidence 678899999999999999999999986554321 11222334555 89999996 3778999999999999999999
Q ss_pred HHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCH-HHHHhhCCEEEEEeCCEEEEEc
Q 007178 444 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSM-EEAEALCDRLGIFVDGSLQCIG 511 (614)
Q Consensus 444 al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~-~e~~~l~dri~il~~G~l~~~g 511 (614)
||+.+|+++||||||+|||+.+++.+++.+++. ++|+|||++||++ +++.++||++++|++|++++.|
T Consensus 157 al~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 157 QLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999986 4589999999999 6999999999999999998765
No 189
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-45 Score=374.16 Aligned_cols=222 Identities=23% Similarity=0.399 Sum_probs=194.2
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC-----ccEEEEcCeeCCC-
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT-----SGTAYVQGLDIRT- 363 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~-----sG~i~i~G~~i~~- 363 (614)
+.++++|++|+|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 6 ~~l~~~nl~~~~~~------~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~ 79 (261)
T PRK14258 6 PAIKVNNLSFYYDT------QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYER 79 (261)
T ss_pred ceEEEeeEEEEeCC------eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhcc
Confidence 36999999999973 46999999999999999999999999999999999999986 8999999998742
Q ss_pred --cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 007178 364 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 438 (614)
Q Consensus 364 --~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqr 438 (614)
.....++.++|+||++.+++ +|++||+.+.....+. +..+..+++.++++.+++.+ ....++++.+||||||||
T Consensus 80 ~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 158 (261)
T PRK14258 80 RVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQR 158 (261)
T ss_pred ccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHH
Confidence 23456778999999999988 8999999876544443 22344567888999999842 124688999999999999
Q ss_pred HHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHhhCCEEEEEeC-----CEEEEEc
Q 007178 439 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVD-----GSLQCIG 511 (614)
Q Consensus 439 l~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~-~g~tIil~TH~~~e~~~l~dri~il~~-----G~l~~~g 511 (614)
++|||||+.+|+++||||||+|||+.+++.+.+.|+++ + +|+|||++||+++++.++|||+++|++ |+++..|
T Consensus 159 v~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~ 238 (261)
T PRK14258 159 LCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFG 238 (261)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeC
Confidence 99999999999999999999999999999999999985 3 589999999999999999999999999 9999999
Q ss_pred CHHHHHH
Q 007178 512 NPKELKA 518 (614)
Q Consensus 512 ~~~~l~~ 518 (614)
+++++.+
T Consensus 239 ~~~~~~~ 245 (261)
T PRK14258 239 LTKKIFN 245 (261)
T ss_pred CHHHHHh
Confidence 9999865
No 190
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-45 Score=411.59 Aligned_cols=219 Identities=26% Similarity=0.378 Sum_probs=194.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcH-H-H
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM-D-R 367 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~-~-~ 367 (614)
++++++|++|+|++ +.+++|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++.... . .
T Consensus 4 ~~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~ 77 (510)
T PRK09700 4 PYISMAGIGKSFGP------VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLA 77 (510)
T ss_pred ceEEEeeeEEEcCC------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHH
Confidence 47999999999973 56999999999999999999999999999999999999999999999999986422 2 2
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhh----hcCC---CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHH
Q 007178 368 IYTSMGVCPQEDLLWETLTGREHLLFYGR----LKNL---KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 440 (614)
Q Consensus 368 ~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~----~~~~---~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ 440 (614)
.++.+||+||++.+++.+||+||+.+... ..+. +.++.+++++++++.+||. +..++++++||||||||++
T Consensus 78 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgG~~qrv~ 155 (510)
T PRK09700 78 AQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLK--VDLDEKVANLSISHKQMLE 155 (510)
T ss_pred HHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCC--CCcccchhhCCHHHHHHHH
Confidence 34679999999999999999999986432 1121 2234557789999999996 3789999999999999999
Q ss_pred HHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHH
Q 007178 441 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 516 (614)
Q Consensus 441 ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l 516 (614)
||+||+.+|+++||||||+|||+.+++.++++|+++ ++|+|||++||+++++..+|||+++|++|++++.|+++++
T Consensus 156 ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 232 (510)
T PRK09700 156 IAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV 232 (510)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhC
Confidence 999999999999999999999999999999999986 4589999999999999999999999999999999988764
No 191
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-45 Score=373.24 Aligned_cols=222 Identities=23% Similarity=0.346 Sum_probs=194.2
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CccEEEEcCeeCCC-
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT- 363 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~sG~i~i~G~~i~~- 363 (614)
..+.+++++++|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++..
T Consensus 7 ~~~~~~~~~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~ 80 (261)
T PRK14263 7 IVMDCKLDKIFYGN------FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGK 80 (261)
T ss_pred ceEEEEeEEEEeCC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecccc
Confidence 46899999999973 5799999999999999999999999999999999999986 79999999998753
Q ss_pred --cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC--CcccccCCCCChhHHHHH
Q 007178 364 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG--GVADKQAGKYSGGMKRRL 439 (614)
Q Consensus 364 --~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~--~~~~~~~~~LSgG~kqrl 439 (614)
.....++.+||+||++.++ .+|+.||+.+.....+. ..+..++++++++.+++.+. +..++++++||||||||+
T Consensus 81 ~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv 158 (261)
T PRK14263 81 GVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRY-KGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRL 158 (261)
T ss_pred ccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcCc-hHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHH
Confidence 2234567899999999888 48999999887654432 23445678899999998521 134678899999999999
Q ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEe--------CCEEEEEc
Q 007178 440 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV--------DGSLQCIG 511 (614)
Q Consensus 440 ~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~--------~G~l~~~g 511 (614)
+|||||+.+|+++||||||+|||+.+++++++.|+++++++|||++||+++++..+|||+++|+ +|++++.|
T Consensus 159 ~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g 238 (261)
T PRK14263 159 CIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMG 238 (261)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeC
Confidence 9999999999999999999999999999999999988678999999999999999999999996 89999999
Q ss_pred CHHHHHHh
Q 007178 512 NPKELKAR 519 (614)
Q Consensus 512 ~~~~l~~~ 519 (614)
+++++.+.
T Consensus 239 ~~~~~~~~ 246 (261)
T PRK14263 239 PTAQIFQN 246 (261)
T ss_pred CHHHHHhC
Confidence 99988653
No 192
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2.6e-45 Score=409.75 Aligned_cols=216 Identities=26% Similarity=0.448 Sum_probs=193.8
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc-HHH
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDR 367 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~-~~~ 367 (614)
.++++++|++|+|++ +.+++|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ...
T Consensus 9 ~~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~ 82 (510)
T PRK15439 9 PPLLCARSISKQYSG------VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAK 82 (510)
T ss_pred CceEEEEeEEEEeCC------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHH
Confidence 347999999999973 5699999999999999999999999999999999999999999999999988542 222
Q ss_pred -hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHh
Q 007178 368 -IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 446 (614)
Q Consensus 368 -~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~ 446 (614)
.++.+||+||++.+++.+||+||+.+.... ..+.+++++++++.++|. +..++++.+||||||||++|||||+
T Consensus 83 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~----~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~la~aL~ 156 (510)
T PRK15439 83 AHQLGIYLVPQEPLLFPNLSVKENILFGLPK----RQASMQKMKQLLAALGCQ--LDLDSSAGSLEVADRQIVEILRGLM 156 (510)
T ss_pred HHhCCEEEEeccCccCCCCcHHHHhhccccc----chHHHHHHHHHHHHcCCC--ccccCChhhCCHHHHHHHHHHHHHH
Confidence 235799999999999999999999875321 234456788999999996 4789999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHH
Q 007178 447 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 516 (614)
Q Consensus 447 ~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l 516 (614)
.+|+++||||||+|||+.+++.++++|+++ ++|+|||++||+++++..+|||+++|++|+++..|+++++
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 157 RDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHc
Confidence 999999999999999999999999999986 4689999999999999999999999999999999998765
No 193
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=3.3e-45 Score=373.19 Aligned_cols=223 Identities=25% Similarity=0.369 Sum_probs=190.3
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCee-----CCC-
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD-----IRT- 363 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~-----i~~- 363 (614)
++++++|+++.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|++ +..
T Consensus 2 ~~l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 75 (253)
T TIGR02323 2 PLLQVSGLSKSYGG------GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQL 75 (253)
T ss_pred ceEEEeeeEEEeCC------ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccC
Confidence 36999999999973 469999999999999999999999999999999999999999999999977 532
Q ss_pred cHH----HhhcceEEEcCCCC--CCCCCCHHHHHHHHhh-hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHH
Q 007178 364 DMD----RIYTSMGVCPQEDL--LWETLTGREHLLFYGR-LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK 436 (614)
Q Consensus 364 ~~~----~~~~~ig~~~Q~~~--l~~~lTv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~k 436 (614)
... ..++.+||+||++. +++.+|+.||+.+... .......+.+++++++++.+++.+ ...++.+.+||||||
T Consensus 76 ~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~LSgG~~ 154 (253)
T TIGR02323 76 SEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDP-TRIDDLPRAFSGGMQ 154 (253)
T ss_pred CHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCCh-hhhhcCchhcCHHHH
Confidence 111 12457999999974 4566799999875422 111112234567889999999952 367999999999999
Q ss_pred HHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHH
Q 007178 437 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPK 514 (614)
Q Consensus 437 qrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~ 514 (614)
||++|||||+.+|+++||||||+|||+.+++.++++|++. + .|.|||++||+++++..+|||+++|++|+++..|+++
T Consensus 155 qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~ 234 (253)
T TIGR02323 155 QRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTD 234 (253)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999999885 4 3899999999999999999999999999999999998
Q ss_pred HHHHh
Q 007178 515 ELKAR 519 (614)
Q Consensus 515 ~l~~~ 519 (614)
++..+
T Consensus 235 ~~~~~ 239 (253)
T TIGR02323 235 QVLDD 239 (253)
T ss_pred HHhcC
Confidence 88653
No 194
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=4e-45 Score=372.99 Aligned_cols=219 Identities=21% Similarity=0.293 Sum_probs=190.1
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC----CccEEEEcCeeCCCcHH
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT----TSGTAYVQGLDIRTDMD 366 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p----~sG~i~i~G~~i~~~~~ 366 (614)
.++++|++|+|+ +.+++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. ..
T Consensus 4 ~l~~~~l~~~~~-------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~-~~ 75 (254)
T PRK10418 4 QIELRNIALQAA-------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP-CA 75 (254)
T ss_pred EEEEeCeEEEec-------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccc-cc
Confidence 689999999993 3599999999999999999999999999999999999999 99999999998853 22
Q ss_pred HhhcceEEEcCCCC--CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC-CcccccCCCCChhHHHHHHHHH
Q 007178 367 RIYTSMGVCPQEDL--LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG-GVADKQAGKYSGGMKRRLSVAI 443 (614)
Q Consensus 367 ~~~~~ig~~~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-~~~~~~~~~LSgG~kqrl~ia~ 443 (614)
..++.+||+||++. +.+.+|+.+|+.+.....+.. ..++++.++++.+++.+. ...++.+.+||||||||++|||
T Consensus 76 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~lar 153 (254)
T PRK10418 76 LRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKP--ADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIAL 153 (254)
T ss_pred cccceEEEEecCCccccCccccHHHHHHHHHHHcCCC--hHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHH
Confidence 23467999999974 456689999987755443432 234678899999999631 1468999999999999999999
Q ss_pred HHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 444 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 444 al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
||+.+|+++||||||+|||+.+++.+++.|+++ + .|+|||++||+++++..+|||+++|++|+++..|+++++.+.
T Consensus 154 al~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 231 (254)
T PRK10418 154 ALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNA 231 (254)
T ss_pred HHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 999999999999999999999999999999986 4 389999999999999999999999999999999999988653
No 195
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.3e-43 Score=431.54 Aligned_cols=227 Identities=22% Similarity=0.372 Sum_probs=193.1
Q ss_pred eEEEEeEEEEcCCCCC-------CCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEEcCeeC
Q 007178 291 AIISDNLRKIYPGRDG-------NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT--TSGTAYVQGLDI 361 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~-------~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p--~sG~i~i~G~~i 361 (614)
.+..+||+...+.... ..++.+|+|+|+++++||+++|+||||||||||+|+|+|..++ .+|+|.++|++.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 5889999988753211 1235799999999999999999999999999999999999763 789999999886
Q ss_pred CCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcC---CCchhHHHHHHHHHHHcCCCCCCcccccC-----CCCCh
Q 007178 362 RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKN---LKGPALTQAVEESLKSVNLFHGGVADKQA-----GKYSG 433 (614)
Q Consensus 362 ~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----~~LSg 433 (614)
.. ...++.+|||+|++.+++.+||+|||.+.+.++. .+.++..++++++++.+||.+ .+|+.+ +.|||
T Consensus 947 ~~--~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~--~~~~~vg~~~~~~LSg 1022 (1470)
T PLN03140 947 KQ--ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDN--LKDAIVGLPGVTGLST 1022 (1470)
T ss_pred Ch--HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChh--HhCCccCCCCCCCcCH
Confidence 42 2345679999999999999999999999876542 233445567999999999973 677776 58999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHH-HHHhhCCEEEEEeC-CEEEEE
Q 007178 434 GMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSME-EAEALCDRLGIFVD-GSLQCI 510 (614)
Q Consensus 434 G~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~-e~~~l~dri~il~~-G~l~~~ 510 (614)
||||||+||++|+.+|++++|||||+|||+.++..+++.|+++ ++|+|||++||+++ ++.++|||+++|++ |++++.
T Consensus 1023 GerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~ 1102 (1470)
T PLN03140 1023 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYS 1102 (1470)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEE
Confidence 9999999999999999999999999999999999999999986 46999999999998 57789999999996 899999
Q ss_pred cCH----HHHHHhcC
Q 007178 511 GNP----KELKARYG 521 (614)
Q Consensus 511 g~~----~~l~~~~~ 521 (614)
|++ +++.+.+.
T Consensus 1103 G~~~~~~~~~~~yF~ 1117 (1470)
T PLN03140 1103 GPLGRNSHKIIEYFE 1117 (1470)
T ss_pred CCcccccccHHHHHH
Confidence 986 35555443
No 196
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=1.4e-45 Score=364.13 Aligned_cols=200 Identities=25% Similarity=0.412 Sum_probs=177.3
Q ss_pred EEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC--c---HHHh
Q 007178 294 SDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT--D---MDRI 368 (614)
Q Consensus 294 ~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~--~---~~~~ 368 (614)
++|+++.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. . ....
T Consensus 1 i~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 74 (206)
T TIGR03608 1 LKNISKKFGD------KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFR 74 (206)
T ss_pred CcceEEEECC------EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHH
Confidence 4789999973 569999999999999999999999999999999999999999999999998642 1 1235
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCC
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 448 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~ 448 (614)
++.+||++|++.+++.+|++||+.+.....+....+..++++++++.+|+. +..++++.+||||||||++|||||+.+
T Consensus 75 ~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~lS~G~~qr~~laral~~~ 152 (206)
T TIGR03608 75 REKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLN--LKLKQKIYELSGGEQQRVALARAILKD 152 (206)
T ss_pred HhCeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCch--hhhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 678999999999999999999999865554444455567889999999996 478999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEE
Q 007178 449 PKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF 502 (614)
Q Consensus 449 p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il 502 (614)
|+++||||||+|||+.+++.+++.|++. ++|+|||++||+++.++ +|||+++|
T Consensus 153 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~~d~i~~l 206 (206)
T TIGR03608 153 PPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAK-QADRVIEL 206 (206)
T ss_pred CCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh-hcCEEEeC
Confidence 9999999999999999999999999986 45899999999999775 79999875
No 197
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-45 Score=375.59 Aligned_cols=222 Identities=23% Similarity=0.400 Sum_probs=192.0
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CccEEEEcCeeCCC
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT 363 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~sG~i~i~G~~i~~ 363 (614)
.++|+++|++++|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++..
T Consensus 18 ~~~l~~~nl~~~~~~------~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~ 91 (274)
T PRK14265 18 HSVFEVEGVKVFYGG------FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYD 91 (274)
T ss_pred CceEEEeeEEEEeCC------eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccc
Confidence 347999999999973 4699999999999999999999999999999999999863 69999999998753
Q ss_pred ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 007178 364 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 438 (614)
Q Consensus 364 ---~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqr 438 (614)
.....++.+||+||++.+++. |+.||+.+....++.. ...++.++++++.+++.. .+..++++.+||||||||
T Consensus 92 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qr 169 (274)
T PRK14265 92 SQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANGYK-GNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQR 169 (274)
T ss_pred ccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcCch-HHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHH
Confidence 223456789999999998875 9999998765443322 223455677888888731 125688999999999999
Q ss_pred HHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEe---------CCEEEE
Q 007178 439 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV---------DGSLQC 509 (614)
Q Consensus 439 l~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~---------~G~l~~ 509 (614)
++|||||+.+|+++||||||+|||+.+++.++++|++.++++|||++||+++++..+|||+++|+ +|++++
T Consensus 170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~ 249 (274)
T PRK14265 170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE 249 (274)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999987667999999999999999999999998 899999
Q ss_pred EcCHHHHHH
Q 007178 510 IGNPKELKA 518 (614)
Q Consensus 510 ~g~~~~l~~ 518 (614)
.|+++++.+
T Consensus 250 ~g~~~~~~~ 258 (274)
T PRK14265 250 FSPTEQMFG 258 (274)
T ss_pred eCCHHHHHh
Confidence 999998864
No 198
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-45 Score=370.97 Aligned_cols=222 Identities=26% Similarity=0.458 Sum_probs=194.3
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCccEEEEcCeeCCC--
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT-- 363 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-----p~sG~i~i~G~~i~~-- 363 (614)
+++++|+++.|++ +.+++|+||++++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 3 ~l~~~~v~~~~~~------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~ 76 (250)
T PRK14266 3 RIEVENLNTYFDD------AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPA 76 (250)
T ss_pred EEEEEeEEEEeCC------eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccccc
Confidence 5889999999973 569999999999999999999999999999999999864 489999999998853
Q ss_pred -cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHHH
Q 007178 364 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 439 (614)
Q Consensus 364 -~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqrl 439 (614)
.....++.+||+||++.+++. |++||+.+.....+.. .+..++++.++++.+++.+ .+..++++.+||||||||+
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv 155 (250)
T PRK14266 77 VDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRL 155 (250)
T ss_pred ccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHH
Confidence 234567889999999999985 9999998765433322 2345677889999999842 1246888999999999999
Q ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 440 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 440 ~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
+|||||+.+|+++||||||+|||+.+++.+.++|++.++++|||++||+++++..+|||+++|++|++++.|+++++...
T Consensus 156 ~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~~~ 235 (250)
T PRK14266 156 CIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFIN 235 (250)
T ss_pred HHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHHhC
Confidence 99999999999999999999999999999999999887789999999999999999999999999999999999988544
No 199
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-45 Score=417.81 Aligned_cols=230 Identities=25% Similarity=0.355 Sum_probs=200.0
Q ss_pred CCeEEEEeEEEEcCCCCC-----CCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC
Q 007178 289 SHAIISDNLRKIYPGRDG-----NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT 363 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~-----~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~ 363 (614)
.++++++||+|.|+...+ ...+.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++..
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~ 390 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDT 390 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCc
Confidence 357999999999963110 012469999999999999999999999999999999999999999999999998854
Q ss_pred c----HHHhhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHH
Q 007178 364 D----MDRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK 436 (614)
Q Consensus 364 ~----~~~~~~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~k 436 (614)
. ....+++|||+||++ .+++.+||.||+.+....++. ..++.++++.++++.+||.. +..++++++||||||
T Consensus 391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~-~~~~~~~~~LSgGqr 469 (623)
T PRK10261 391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLP-EHAWRYPHEFSGGQR 469 (623)
T ss_pred CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCH-HHhhCCcccCCHHHH
Confidence 2 123467899999997 589999999999886555443 23445678899999999952 368999999999999
Q ss_pred HHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHH
Q 007178 437 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPK 514 (614)
Q Consensus 437 qrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~ 514 (614)
||++|||||+.+|++|||||||+|||+.++++++++|+++ ++ |.|||++|||++++..+||||++|++|++++.|+++
T Consensus 470 QRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~ 549 (623)
T PRK10261 470 QRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRR 549 (623)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence 9999999999999999999999999999999999999986 44 899999999999999999999999999999999999
Q ss_pred HHHHh
Q 007178 515 ELKAR 519 (614)
Q Consensus 515 ~l~~~ 519 (614)
++...
T Consensus 550 ~i~~~ 554 (623)
T PRK10261 550 AVFEN 554 (623)
T ss_pred HHhcC
Confidence 98653
No 200
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.6e-45 Score=399.50 Aligned_cols=236 Identities=25% Similarity=0.401 Sum_probs=207.1
Q ss_pred CCCeEEEEeEEEEcCCCC-----CCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCC
Q 007178 288 TSHAIISDNLRKIYPGRD-----GNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR 362 (614)
Q Consensus 288 ~~~~i~~~~l~k~y~~~~-----~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~ 362 (614)
..+.++++||+|.|..++ ..+...|++||||++.+||++||+|++|||||||.|+|+|+.+|++|+|.++|.+..
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~ 356 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLD 356 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccc
Confidence 356799999999998532 112468999999999999999999999999999999999999999999999998732
Q ss_pred --C-cHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCCCCcccccCCCCChhHH
Q 007178 363 --T-DMDRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK 436 (614)
Q Consensus 363 --~-~~~~~~~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~k 436 (614)
. ...+.|+++-++|||+ .|.|.+||++++.-...+++.. ..+.++++.++++.+||.+ ++.++++++||||||
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~-~~l~ryP~elSGGQr 435 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPP-EFLDRYPHELSGGQR 435 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCH-HHHhcCchhcCcchh
Confidence 1 2345667788888875 6999999999999887766433 4556678999999999985 689999999999999
Q ss_pred HHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHH
Q 007178 437 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPK 514 (614)
Q Consensus 437 qrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~ 514 (614)
||++|||||+.+|++|++|||||.||+..+.++.++|++++ + |.|.|++||||+.++.+||||++|.+|++++.|+.+
T Consensus 436 QRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~ 515 (539)
T COG1123 436 QRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTE 515 (539)
T ss_pred HHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHH
Confidence 99999999999999999999999999999999999999974 3 999999999999999999999999999999999999
Q ss_pred HHHHhcCCcE
Q 007178 515 ELKARYGGSY 524 (614)
Q Consensus 515 ~l~~~~~~~~ 524 (614)
.+.+...+.|
T Consensus 516 ~v~~~p~h~Y 525 (539)
T COG1123 516 KVFENPQHPY 525 (539)
T ss_pred HHhcCCCChH
Confidence 8887655444
No 201
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=2.8e-45 Score=368.72 Aligned_cols=206 Identities=24% Similarity=0.338 Sum_probs=180.8
Q ss_pred eeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC----CccEEEEcCeeCCCcHHHhhcceEEEcCCCC--CCCCC
Q 007178 312 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT----TSGTAYVQGLDIRTDMDRIYTSMGVCPQEDL--LWETL 385 (614)
Q Consensus 312 ~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p----~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~--l~~~l 385 (614)
+++|+||++++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++... +..++.+||+||++. +++.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~-~~~~~~i~~~~q~~~~~~~~~~ 79 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL-SIRGRHIATIMQNPRTAFNPLF 79 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh-hhhhheeEEEecCchhhcCccc
Confidence 57899999999999999999999999999999999999 899999999988532 222357999999984 56778
Q ss_pred CHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC-CcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHH
Q 007178 386 TGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG-GVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA 464 (614)
Q Consensus 386 Tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~ 464 (614)
|++||+.+.....+....+.++++.++++.+++.+. +..++++.+||||||||++||||++.+|+++||||||+|||+.
T Consensus 80 t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~ 159 (230)
T TIGR02770 80 TMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVV 159 (230)
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHH
Confidence 999999876554443334456678999999999620 2578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 465 SRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 465 ~~~~i~~~l~~~~--~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
+++.+++.|++++ .|+|||++||+++++..+|||+++|++|++.+.|+++++..
T Consensus 160 ~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 215 (230)
T TIGR02770 160 NQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFY 215 (230)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999863 38999999999999999999999999999999999998865
No 202
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=6.2e-45 Score=374.44 Aligned_cols=227 Identities=24% Similarity=0.354 Sum_probs=194.6
Q ss_pred eEEEEeEEEEcCCCC---CCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc---
Q 007178 291 AIISDNLRKIYPGRD---GNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--- 364 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~---~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~--- 364 (614)
+|+++|++|.|++.. +..++.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++...
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 589999999997310 00025799999999999999999999999999999999999999999999999987532
Q ss_pred -HHHhhcceEEEcCCC--CCCCCCCHHHHHHHHhh-hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHH
Q 007178 365 -MDRIYTSMGVCPQED--LLWETLTGREHLLFYGR-LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 440 (614)
Q Consensus 365 -~~~~~~~ig~~~Q~~--~l~~~lTv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ 440 (614)
....++.+||+||++ .+++..|+.||+.+... ..+....+..++++++++.+|+.. ...++++.+||||||||++
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~~LS~Ge~qrl~ 161 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDD-SVLDKRPPQLSGGQLQRVC 161 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCCh-hHhhCCCccCChHHHHHHH
Confidence 134567899999997 46778999999876433 223334445567899999999952 3678999999999999999
Q ss_pred HHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 441 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 441 ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
|||||+.+|+++||||||+|||+.+++.+.+.|++++ + |+|||++||+++++..+|||+++|++|++++.|+++++..
T Consensus 162 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 241 (268)
T PRK10419 162 LARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKLT 241 (268)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhccC
Confidence 9999999999999999999999999999999999863 3 8999999999999999999999999999999999988653
No 203
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=2.8e-45 Score=367.51 Aligned_cols=214 Identities=25% Similarity=0.360 Sum_probs=184.2
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHH
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDR 367 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~ 367 (614)
.++++++|++|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ....
T Consensus 5 ~~~i~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 78 (225)
T PRK10247 5 SPLLQLQNVGYLAGD------AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEI 78 (225)
T ss_pred CceEEEeccEEeeCC------ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHH
Confidence 347999999999973 469999999999999999999999999999999999999999999999998754 3344
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhC
Q 007178 368 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 447 (614)
Q Consensus 368 ~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~ 447 (614)
.++.+||+||++.+++. |++||+.+....++. ...+++++++++.+++.+ ...++++.+||||||||++|||||+.
T Consensus 79 ~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~l~~~~l~~-~~~~~~~~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 79 YRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRNQ--QPDPAIFLDDLERFALPD-TILTKNIAELSGGEKQRISLIRNLQF 154 (225)
T ss_pred HHhccEEEecccccccc-cHHHHHHhHHhhcCC--ChHHHHHHHHHHHcCCCh-HHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 56789999999998875 999999876544332 122456789999999952 36789999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHhhCCEEEEEe-CCEEEEEcCH
Q 007178 448 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFV-DGSLQCIGNP 513 (614)
Q Consensus 448 ~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~-~g~tIil~TH~~~e~~~l~dri~il~-~G~l~~~g~~ 513 (614)
+|+++||||||+|||+.+++.+.++|++. + +|+|||++||++++++ .|||+++|+ ++..+.+|+.
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~~~~~~~~~~~~ 222 (225)
T PRK10247 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQPHAGEMQEARY 222 (225)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEecccchHhhhhh
Confidence 99999999999999999999999999986 3 4899999999999996 699999995 4555555543
No 204
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-44 Score=382.30 Aligned_cols=226 Identities=27% Similarity=0.442 Sum_probs=195.7
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCccEEEEcCeeCCC
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT 363 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-----p~sG~i~i~G~~i~~ 363 (614)
..+|+++|++++|.+. .+.+|+|+||+|++||++||+||||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 78 ~~~i~~~nls~~y~~~----~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~ 153 (329)
T PRK14257 78 ANVFEIRNFNFWYMNR----TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS 153 (329)
T ss_pred CceEEEEeeEEEecCC----CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 3579999999999632 3569999999999999999999999999999999999986 579999999999853
Q ss_pred ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchh-HHHHHHHHHHHcCCCC--CCcccccCCCCChhHHH
Q 007178 364 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA-LTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 437 (614)
Q Consensus 364 ---~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~-~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kq 437 (614)
....+|+.+||+||++.+++ .|++||+.+.....+...++ .++.++++++.++|.+ ....++++.+|||||||
T Consensus 154 ~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkq 232 (329)
T PRK14257 154 KKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQ 232 (329)
T ss_pred cccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHH
Confidence 22456788999999999986 69999999765444333222 3345778889888742 12467899999999999
Q ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHH
Q 007178 438 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 517 (614)
Q Consensus 438 rl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 517 (614)
|++||||++.+|+++||||||+|||+.+++.+.+.|+++.+++|||++||+++++.++||||++|++|++++.|+++++.
T Consensus 233 Rl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 233 RLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIF 312 (329)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999998777899999999999999999999999999999999999986
Q ss_pred Hh
Q 007178 518 AR 519 (614)
Q Consensus 518 ~~ 519 (614)
+.
T Consensus 313 ~~ 314 (329)
T PRK14257 313 IH 314 (329)
T ss_pred cC
Confidence 53
No 205
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=3.3e-45 Score=369.82 Aligned_cols=220 Identities=26% Similarity=0.476 Sum_probs=182.9
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhhc
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 370 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~~ 370 (614)
++++|+++.|++.. ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .....++
T Consensus 1 l~i~~l~~~~~~~~---~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (238)
T cd03249 1 IEFKNVSFRYPSRP---DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRS 77 (238)
T ss_pred CeEEEEEEecCCCC---CccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHh
Confidence 46899999997421 2469999999999999999999999999999999999999999999999998753 3334567
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHH-----HHHHHHHHc--CCCCCCcccccCCCCChhHHHHHHHHH
Q 007178 371 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ-----AVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLSVAI 443 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~~~LSgG~kqrl~ia~ 443 (614)
.+||+||++.+++ .|++||+.+....+ ..++..+ .+.++++.+ ++. ...++++.+||||||||++||+
T Consensus 78 ~i~~~~q~~~~~~-~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~LS~G~~qrv~la~ 152 (238)
T cd03249 78 QIGLVSQEPVLFD-GTIAENIRYGKPDA--TDEEVEEAAKKANIHDFIMSLPDGYD--TLVGERGSQLSGGQKQRIAIAR 152 (238)
T ss_pred hEEEECCchhhhh-hhHHHHhhccCCCC--CHHHHHHHHHHcChHHHHHhhccccc--eeeccCCccCCHHHHHHHHHHH
Confidence 7999999998887 59999998753221 1111111 122333333 443 2567888999999999999999
Q ss_pred HHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHhc
Q 007178 444 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 520 (614)
Q Consensus 444 al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 520 (614)
||+.+|+++||||||+|||+.+++.+++.|++.++|+|||++||++++++ .|||+++|++|+++..|+.+++....
T Consensus 153 al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~~~~~~~~~~~~~ 228 (238)
T cd03249 153 ALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR-NADLIAVLQNGQVVEQGTHDELMAQK 228 (238)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh-hCCEEEEEECCEEEEeCCHHHHhhcC
Confidence 99999999999999999999999999999998767899999999999997 79999999999999999988876643
No 206
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.4e-45 Score=361.41 Aligned_cols=201 Identities=29% Similarity=0.376 Sum_probs=180.6
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhc
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 370 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~ 370 (614)
+++++|++++|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.......++
T Consensus 1 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~ 74 (204)
T PRK13538 1 MLEARNLACERDE------RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQ 74 (204)
T ss_pred CeEEEEEEEEECC------EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhh
Confidence 4789999999973 5699999999999999999999999999999999999999999999999998654455677
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCC
Q 007178 371 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 450 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~ 450 (614)
+++|++|++.+++.+|++||+.++...++. ..+++++++++.+|+. +..++++.+||||||||++||+|++.+|+
T Consensus 75 ~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~---~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrl~la~al~~~p~ 149 (204)
T PRK13538 75 DLLYLGHQPGIKTELTALENLRFYQRLHGP---GDDEALWEALAQVGLA--GFEDVPVRQLSAGQQRRVALARLWLTRAP 149 (204)
T ss_pred heEEeCCccccCcCCcHHHHHHHHHHhcCc---cHHHHHHHHHHHcCCH--HHhhCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 899999999999999999999987655432 2346788999999996 36799999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEE
Q 007178 451 VVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF 502 (614)
Q Consensus 451 vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il 502 (614)
+++|||||+|||+.+++.++++|++. ++|+|||++||+++++.+..+|++.+
T Consensus 150 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 150 LWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999999986 46899999999999999988888665
No 207
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-44 Score=371.54 Aligned_cols=223 Identities=21% Similarity=0.358 Sum_probs=193.4
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CccEEEEcCeeCC-
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIR- 362 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~sG~i~i~G~~i~- 362 (614)
...|+++|++|+|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++.
T Consensus 14 ~~~l~~~~l~~~~~~------~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~ 87 (265)
T PRK14252 14 QQKSEVNKLNFYYGG------YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNI 87 (265)
T ss_pred CceEEEEEEEEEECC------eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccc
Confidence 346999999999973 4699999999999999999999999999999999999875 7999999998763
Q ss_pred --C--cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCch-hHHHHHHHHHHHcCCCC--CCcccccCCCCChhH
Q 007178 363 --T--DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGP-ALTQAVEESLKSVNLFH--GGVADKQAGKYSGGM 435 (614)
Q Consensus 363 --~--~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~-~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~ 435 (614)
. .....++.+||+||++.+++. |++||+.+.....+.... ..++++.++++.+++.+ .+..++.+.+|||||
T Consensus 88 ~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~ 166 (265)
T PRK14252 88 LSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQ 166 (265)
T ss_pred cccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHH
Confidence 1 223557789999999999986 999999876544443322 23467788888888741 125678899999999
Q ss_pred HHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHH
Q 007178 436 KRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 515 (614)
Q Consensus 436 kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~ 515 (614)
|||++|||||+.+|+++||||||+|||+.+++.+++.|+++++++|||++||+++++..+|||+++|++|++++.|+.++
T Consensus 167 ~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 246 (265)
T PRK14252 167 QQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDT 246 (265)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987667999999999999999999999999999999999988
Q ss_pred HHH
Q 007178 516 LKA 518 (614)
Q Consensus 516 l~~ 518 (614)
+..
T Consensus 247 ~~~ 249 (265)
T PRK14252 247 IFI 249 (265)
T ss_pred HHh
Confidence 864
No 208
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=3.3e-45 Score=365.36 Aligned_cols=206 Identities=25% Similarity=0.446 Sum_probs=177.0
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhhc
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 370 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~~ 370 (614)
++++|++|.|++. ++.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. .....++
T Consensus 3 l~~~~l~~~~~~~----~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 78 (220)
T cd03245 3 IEFRNVSFSYPNQ----EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRR 78 (220)
T ss_pred EEEEEEEEEcCCC----CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHh
Confidence 7899999999642 2569999999999999999999999999999999999999999999999998753 2334567
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCccccc-----------CCCCChhHHHHH
Q 007178 371 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQ-----------AGKYSGGMKRRL 439 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----------~~~LSgG~kqrl 439 (614)
.+||+||++.+++ .|+.||+.+.... . .++++.++++.+++.+ ..++. +.+||||||||+
T Consensus 79 ~i~~~~q~~~~~~-~tv~e~l~~~~~~---~---~~~~~~~~l~~~~l~~--~~~~~~~~~~~~~~~~~~~LSgG~~qrl 149 (220)
T cd03245 79 NIGYVPQDVTLFY-GTLRDNITLGAPL---A---DDERILRAAELAGVTD--FVNKHPNGLDLQIGERGRGLSGGQRQAV 149 (220)
T ss_pred hEEEeCCCCcccc-chHHHHhhcCCCC---C---CHHHHHHHHHHcCcHH--HHHhccccccceecCCCccCCHHHHHHH
Confidence 8999999998887 6999999764321 1 1245667888888852 44543 469999999999
Q ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEc
Q 007178 440 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 511 (614)
Q Consensus 440 ~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g 511 (614)
+||||++.+|+++||||||+|||+.+++.+++.|++.++++|||++||+++++ ++|||+++|++|+++..|
T Consensus 150 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 150 ALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-HhCCEEEEEeCCeEeecC
Confidence 99999999999999999999999999999999999876568999999999987 699999999999998654
No 209
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.5e-45 Score=414.98 Aligned_cols=228 Identities=21% Similarity=0.339 Sum_probs=197.7
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCC------
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR------ 362 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~------ 362 (614)
.++|+++|+++.|++.. ..+.+++|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|.++.
T Consensus 10 ~~~l~v~~l~~~y~~~~--~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~ 87 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQ--QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQV 87 (623)
T ss_pred CceEEEeceEEEecCCC--CceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccc
Confidence 34799999999996421 1257999999999999999999999999999999999999999999999987541
Q ss_pred ----C-cH---HHhh-cceEEEcCCC--CCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCC-CCcccccCC
Q 007178 363 ----T-DM---DRIY-TSMGVCPQED--LLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFH-GGVADKQAG 429 (614)
Q Consensus 363 ----~-~~---~~~~-~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~~ 429 (614)
. .. ...| +.|||+||++ .+++.+||+||+.+..+.. +.+.++.++++.++++.+||.+ ....++++.
T Consensus 88 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~ 167 (623)
T PRK10261 88 IELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPH 167 (623)
T ss_pred cccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCc
Confidence 1 11 1233 4799999997 6889999999999876653 5555566788999999999952 125789999
Q ss_pred CCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHhhCCEEEEEeCCEE
Q 007178 430 KYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSL 507 (614)
Q Consensus 430 ~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~-g~tIil~TH~~~e~~~l~dri~il~~G~l 507 (614)
+|||||||||+||+||+.+|++|||||||+|||+.++++++++++++. + |+|||++|||++++..+||||++|++|++
T Consensus 168 ~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i 247 (623)
T PRK10261 168 QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEA 247 (623)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCee
Confidence 999999999999999999999999999999999999999999999863 4 89999999999999999999999999999
Q ss_pred EEEcCHHHHHH
Q 007178 508 QCIGNPKELKA 518 (614)
Q Consensus 508 ~~~g~~~~l~~ 518 (614)
+..|+++++..
T Consensus 248 ~~~g~~~~~~~ 258 (623)
T PRK10261 248 VETGSVEQIFH 258 (623)
T ss_pred cccCCHHHhhc
Confidence 99999988754
No 210
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=3.7e-45 Score=367.85 Aligned_cols=198 Identities=32% Similarity=0.488 Sum_probs=175.3
Q ss_pred eeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHH
Q 007178 313 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLL 392 (614)
Q Consensus 313 l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~ 392 (614)
++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..... ..+|+||++.+++.+|++||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~----~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP----DRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh----hheEEecCcccCCCCCHHHHHH
Confidence 578999999999999999999999999999999999999999999998854221 2489999999999999999998
Q ss_pred HHhh--hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHH
Q 007178 393 FYGR--LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLW 470 (614)
Q Consensus 393 ~~~~--~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~ 470 (614)
+... ..+...++.+++++++++.+|+. +..++++.+||||||||++|||||+.+|+++||||||+|||+.+++.++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~ 154 (230)
T TIGR01184 77 LAVDRVLPDLSKSERRAIVEEHIALVGLT--EAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQ 154 (230)
T ss_pred HHHHhcccCCCHHHHHHHHHHHHHHcCCH--HHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHH
Confidence 8632 22333344566788999999996 4789999999999999999999999999999999999999999999999
Q ss_pred HHHHHh-c-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHH
Q 007178 471 NVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 516 (614)
Q Consensus 471 ~~l~~~-~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l 516 (614)
+.|++. + .|+|||++||+++++..+|||+++|++|++++.|+..++
T Consensus 155 ~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 155 EELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 999885 4 489999999999999999999999999999988866544
No 211
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=8.2e-45 Score=362.78 Aligned_cols=211 Identities=27% Similarity=0.407 Sum_probs=185.6
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc----HHH
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MDR 367 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~----~~~ 367 (614)
++++|+++.|++.. ..+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ...
T Consensus 2 l~~~~l~~~~~~~~--~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (220)
T TIGR02982 2 ISIRNLNHYYGHGS--LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79 (220)
T ss_pred EEEEEEEEEccCCC--cceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHH
Confidence 78899999997421 125799999999999999999999999999999999999999999999999987531 124
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcC-CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHh
Q 007178 368 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKN-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 446 (614)
Q Consensus 368 ~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~ 446 (614)
.++.+||+||++.+++++|+.||+.+...... ...++.+++++++++.+|+. +..++++.+||+|||||++|||||+
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~lS~G~~qrv~laral~ 157 (220)
T TIGR02982 80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLG--DHLDYYPHNLSGGQKQRVAIARALV 157 (220)
T ss_pred HHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCh--hhhhcChhhCCHHHHHHHHHHHHHh
Confidence 56789999999999999999999998765442 33445567889999999996 4789999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHhhCCEEEEEeCCEE
Q 007178 447 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSL 507 (614)
Q Consensus 447 ~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~-~g~tIil~TH~~~e~~~l~dri~il~~G~l 507 (614)
.+|+++||||||+|||+.+++.+.+.|++. + +|+|||++||+++. ..+||++++|++|++
T Consensus 158 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~-~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 158 HRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRI-LDVADRIVHMEDGKL 219 (220)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HhhCCEEEEEECCEE
Confidence 999999999999999999999999999985 3 48999999999986 468999999999986
No 212
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=2.6e-44 Score=366.34 Aligned_cols=220 Identities=20% Similarity=0.284 Sum_probs=188.3
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCC--CCCCccEEEEcCeeCCCc-HH
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI--TRTTSGTAYVQGLDIRTD-MD 366 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl--~~p~sG~i~i~G~~i~~~-~~ 366 (614)
.+++++|+++.|++ +.+++|+||++++||++||+|+||||||||+++|+|+ ++|++|+|.++|.++... ..
T Consensus 6 ~~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~ 79 (252)
T CHL00131 6 PILEIKNLHASVNE------NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPE 79 (252)
T ss_pred ceEEEEeEEEEeCC------EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChh
Confidence 36999999999973 4699999999999999999999999999999999998 589999999999988642 22
Q ss_pred Hhh-cceEEEcCCCCCCCCCCHHHHHHHHhhhc----CC---CchhHHHHHHHHHHHcCCCCCCcccccCC-CCChhHHH
Q 007178 367 RIY-TSMGVCPQEDLLWETLTGREHLLFYGRLK----NL---KGPALTQAVEESLKSVNLFHGGVADKQAG-KYSGGMKR 437 (614)
Q Consensus 367 ~~~-~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~----~~---~~~~~~~~~~~~l~~~~L~~~~~~~~~~~-~LSgG~kq 437 (614)
..+ ..++|+||++.+++.+|+++|+.+..... +. ...+..+++.++++.+++.+ ...++++. +|||||||
T Consensus 80 ~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~LSgG~~q 158 (252)
T CHL00131 80 ERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDP-SFLSRNVNEGFSGGEKK 158 (252)
T ss_pred hhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCch-hhhccccccCCCHHHHH
Confidence 222 25899999999999999999998754321 11 11233466788999999962 35678887 59999999
Q ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhh-CCEEEEEeCCEEEEEcCHHH
Q 007178 438 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEAL-CDRLGIFVDGSLQCIGNPKE 515 (614)
Q Consensus 438 rl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l-~dri~il~~G~l~~~g~~~~ 515 (614)
|++||+||+.+|+++||||||+|||+.+++.++++|+++ ++|+|||++||++++++.+ |||+++|++|+++..|+++.
T Consensus 159 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 238 (252)
T CHL00131 159 RNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAEL 238 (252)
T ss_pred HHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChhh
Confidence 999999999999999999999999999999999999986 4589999999999999887 99999999999999999874
Q ss_pred H
Q 007178 516 L 516 (614)
Q Consensus 516 l 516 (614)
+
T Consensus 239 ~ 239 (252)
T CHL00131 239 A 239 (252)
T ss_pred h
Confidence 3
No 213
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-44 Score=375.39 Aligned_cols=224 Identities=24% Similarity=0.427 Sum_probs=192.5
Q ss_pred CCCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCccEEEEcCeeCC
Q 007178 288 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIR 362 (614)
Q Consensus 288 ~~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-----p~sG~i~i~G~~i~ 362 (614)
...+|+++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 42 ~~~~l~i~nl~~~~~~------~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~ 115 (305)
T PRK14264 42 GDAKLSVEDLDVYYGD------DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIY 115 (305)
T ss_pred CCceEEEEEEEEEeCC------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 3457999999999973 569999999999999999999999999999999999986 69999999999875
Q ss_pred C---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhc------------CCCc-hhHHHHHHHHHHHcCCCC--CCcc
Q 007178 363 T---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK------------NLKG-PALTQAVEESLKSVNLFH--GGVA 424 (614)
Q Consensus 363 ~---~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~------------~~~~-~~~~~~~~~~l~~~~L~~--~~~~ 424 (614)
. .....++.+||+||++.+++. |++||+.+..... +... ...++++.++++.+++.+ .+..
T Consensus 116 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 194 (305)
T PRK14264 116 QDGVNLVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL 194 (305)
T ss_pred cccccHHHHhhceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHh
Confidence 3 234566789999999988884 9999998764321 1111 223567888999998841 1256
Q ss_pred cccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEE-EEEe
Q 007178 425 DKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRL-GIFV 503 (614)
Q Consensus 425 ~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri-~il~ 503 (614)
++++.+||||||||++||+||+.+|++|||||||+|||+.+++.++++|+++++++|||++||+++++..+|||+ ++|+
T Consensus 195 ~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~ 274 (305)
T PRK14264 195 DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLT 274 (305)
T ss_pred cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEec
Confidence 888999999999999999999999999999999999999999999999999766789999999999999999997 5679
Q ss_pred CCEEEEEcCHHHHHH
Q 007178 504 DGSLQCIGNPKELKA 518 (614)
Q Consensus 504 ~G~l~~~g~~~~l~~ 518 (614)
+|++++.|+++++.+
T Consensus 275 ~G~i~~~g~~~~~~~ 289 (305)
T PRK14264 275 GGELVEYDDTDKIFE 289 (305)
T ss_pred CCEEEEeCCHHHHHh
Confidence 999999999988754
No 214
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-44 Score=371.51 Aligned_cols=218 Identities=21% Similarity=0.382 Sum_probs=185.0
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 369 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~ 369 (614)
..++++|++++|++ ++.+++|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. ...+
T Consensus 5 ~~l~~~~l~~~~~~-----~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~--~~~~ 77 (272)
T PRK15056 5 AGIVVNDVTVTWRN-----GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ--ALQK 77 (272)
T ss_pred ceEEEEeEEEEecC-----CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH--hhcc
Confidence 36999999999963 2569999999999999999999999999999999999999999999999998742 1123
Q ss_pred cceEEEcCCCCCC--CCCCHHHHHHHHhh----hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 007178 370 TSMGVCPQEDLLW--ETLTGREHLLFYGR----LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 443 (614)
Q Consensus 370 ~~ig~~~Q~~~l~--~~lTv~e~l~~~~~----~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~ 443 (614)
+.+||+||++.+. ...+++||+.+... ..+....+.+++++++++.+||. +..++++.+||||||||++|||
T Consensus 78 ~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgG~~qrv~lar 155 (272)
T PRK15056 78 NLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMV--EFRHRQIGELSGGQKKRVFLAR 155 (272)
T ss_pred ceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCCh--hHhcCCcccCCHHHHHHHHHHH
Confidence 4699999997652 23478898865311 11112233456778899999996 3789999999999999999999
Q ss_pred HHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHH
Q 007178 444 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 517 (614)
Q Consensus 444 al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 517 (614)
||+.+|+++||||||+|||+.+++.+.++|++.+ +|+|||++||+++++..+|||++++ +|+++..|+++++.
T Consensus 156 aL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 156 AIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 9999999999999999999999999999999864 5899999999999999999999777 89999999988763
No 215
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.2e-44 Score=358.34 Aligned_cols=202 Identities=23% Similarity=0.272 Sum_probs=181.2
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 369 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~ 369 (614)
++++++|++|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ..+
T Consensus 10 ~~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~--~~~ 81 (214)
T PRK13543 10 PLLAAHALAFSRNE------EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG--DRS 81 (214)
T ss_pred ceEEEeeEEEecCC------ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch--hhh
Confidence 47999999999973 4699999999999999999999999999999999999999999999999988642 234
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCC
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 449 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p 449 (614)
+.+||++|++.+++.+|++||+.+....++. ..++.++++++.+++. +..++++.+||||||||+++|||++.+|
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~---~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~~p 156 (214)
T PRK13543 82 RFMAYLGHLPGLKADLSTLENLHFLCGLHGR---RAKQMPGSALAIVGLA--GYEDTLVRQLSAGQKKRLALARLWLSPA 156 (214)
T ss_pred hceEEeecCcccccCCcHHHHHHHHHHhcCC---cHHHHHHHHHHHcCCh--hhccCChhhCCHHHHHHHHHHHHHhcCC
Confidence 6799999999999999999999887655432 2345678899999997 3689999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeC
Q 007178 450 KVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVD 504 (614)
Q Consensus 450 ~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~ 504 (614)
+++||||||+|||+.+++.+++.+++. ++|+|||++||+++++..+|||+++++.
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 157 PLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999999999885 5689999999999999999999998864
No 216
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.7e-44 Score=391.33 Aligned_cols=237 Identities=24% Similarity=0.367 Sum_probs=209.7
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC----ccEEEEcCeeCCCc-
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT----SGTAYVQGLDIRTD- 364 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~----sG~i~i~G~~i~~~- 364 (614)
+.++++||++.|.... ....||+|+||++.+||++||+|.+||||||+.++|.|++++. +|+|.++|.|+...
T Consensus 4 ~lL~V~nL~v~~~~~~--~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~ 81 (539)
T COG1123 4 PLLEVENLTVEFATDG--GRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLS 81 (539)
T ss_pred ceEEEeceEEEEecCC--cceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCC
Confidence 4799999999998652 2357999999999999999999999999999999999999987 89999999987542
Q ss_pred ---HHHhh-cceEEEcCCC--CCCCCCCHHHHHHHHhhhcC-CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHH
Q 007178 365 ---MDRIY-TSMGVCPQED--LLWETLTGREHLLFYGRLKN-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKR 437 (614)
Q Consensus 365 ---~~~~~-~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kq 437 (614)
..++| +.|+|+||++ .|.|-+|+.+.+.-..+.++ ..+++.++++.++|+.+||.+....++++++|||||||
T Consensus 82 ~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQ 161 (539)
T COG1123 82 EREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQ 161 (539)
T ss_pred HHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHH
Confidence 23333 5799999996 56777999999987777665 44778889999999999998633335799999999999
Q ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHH
Q 007178 438 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 515 (614)
Q Consensus 438 rl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~--~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~ 515 (614)
|+.||+||+.+|++||+||||++||+..++++.++|+++. .|.++|++|||++.+.++||||++|.+|++++.|++++
T Consensus 162 Rv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~ 241 (539)
T COG1123 162 RVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEE 241 (539)
T ss_pred HHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999999999999864 59999999999999999999999999999999999999
Q ss_pred HHHhcCCcEEEEE
Q 007178 516 LKARYGGSYVFTM 528 (614)
Q Consensus 516 l~~~~~~~~~l~~ 528 (614)
+.++..+.|+-.+
T Consensus 242 i~~~p~hpYT~~L 254 (539)
T COG1123 242 ILSNPQHPYTRGL 254 (539)
T ss_pred HHhccCCcccHHH
Confidence 9999988887544
No 217
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.3e-44 Score=372.34 Aligned_cols=213 Identities=23% Similarity=0.445 Sum_probs=188.6
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhh
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 369 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~ 369 (614)
.|+++|++++|++. ...+|+|+||+|++||++||+||||||||||+++|+|+++ ++|+|+++|.++.. ....+|
T Consensus 2 ~i~~~nls~~~~~~----~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr 76 (275)
T cd03289 2 QMTVKDLTAKYTEG----GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWR 76 (275)
T ss_pred eEEEEEEEEEeCCC----CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHh
Confidence 37899999999632 2469999999999999999999999999999999999997 79999999999854 445678
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCC-----------CChhHHHH
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGK-----------YSGGMKRR 438 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~-----------LSgG~kqr 438 (614)
+.++|+||++.+|+. |++||+..+.. .. .+++.++++.+||. ++.++.+.. ||||||||
T Consensus 77 ~~i~~v~q~~~lf~~-tv~~nl~~~~~---~~----~~~~~~~l~~~gL~--~~~~~~p~~l~~~~~~~g~~LS~G~~qr 146 (275)
T cd03289 77 KAFGVIPQKVFIFSG-TFRKNLDPYGK---WS----DEEIWKVAEEVGLK--SVIEQFPGQLDFVLVDGGCVLSHGHKQL 146 (275)
T ss_pred hhEEEECCCcccchh-hHHHHhhhccC---CC----HHHHHHHHHHcCCH--HHHHhCcccccceecCCCCCCCHHHHHH
Confidence 899999999999985 99999965421 11 24677888999996 367777766 99999999
Q ss_pred HHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 439 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 439 l~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
+++|||++.+|+++||||||+|||+.+++.+.+.|++..+++|||++||+++++.. ||||++|++|+++..|+++++.+
T Consensus 147 l~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~-~dri~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 147 MCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLE-CQRFLVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred HHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHh-CCEEEEecCCeEeecCCHHHHhh
Confidence 99999999999999999999999999999999999987778999999999999875 99999999999999999999977
Q ss_pred h
Q 007178 519 R 519 (614)
Q Consensus 519 ~ 519 (614)
+
T Consensus 226 ~ 226 (275)
T cd03289 226 E 226 (275)
T ss_pred C
Confidence 4
No 218
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=2.1e-44 Score=360.61 Aligned_cols=211 Identities=23% Similarity=0.343 Sum_probs=178.8
Q ss_pred eEEEEeEEEEcCCCCCCC-ccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEc--Ce--eCCC-c
Q 007178 291 AIISDNLRKIYPGRDGNP-EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQ--GL--DIRT-D 364 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~-~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~--G~--~i~~-~ 364 (614)
+++++|++|+|+++.+.+ ++.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |+ ++.. .
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 378999999996421111 2469999999999999999999999999999999999999999999998 43 4432 1
Q ss_pred HH---Hh-hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHH
Q 007178 365 MD---RI-YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 440 (614)
Q Consensus 365 ~~---~~-~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ 440 (614)
.. +. ++.+||+||++.+++.+|++||+.+.....+...++.++++.++++.+|+.+ ...++++.+||||||||++
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LS~G~~qrl~ 159 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPE-RLWHLPPATFSGGEQQRVN 159 (224)
T ss_pred HHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-hhhhCCcccCCHHHHHHHH
Confidence 11 22 4579999999999999999999987654444444455678889999999963 3458899999999999999
Q ss_pred HHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEE
Q 007178 441 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIF 502 (614)
Q Consensus 441 ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il 502 (614)
|||||+.+|+++||||||+|||+.+++.+.+.|++.+ +|+|||++||++++++.+|||++.+
T Consensus 160 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 160 IARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 9999999999999999999999999999999999864 5899999999999999999999865
No 219
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=1.7e-44 Score=367.14 Aligned_cols=211 Identities=21% Similarity=0.320 Sum_probs=184.5
Q ss_pred EEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhhcc
Q 007178 293 ISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTS 371 (614)
Q Consensus 293 ~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~~~ 371 (614)
+++||++. .+|+|+||++++||+++|+||||||||||+++|+|+.+ .+|+|.++|+++.. .....++.
T Consensus 2 ~~~~l~~~----------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~ 70 (248)
T PRK03695 2 QLNDVAVS----------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARH 70 (248)
T ss_pred cccccchh----------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhh
Confidence 45677763 18999999999999999999999999999999999986 49999999998854 33445567
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhC----
Q 007178 372 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG---- 447 (614)
Q Consensus 372 ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~---- 447 (614)
+||+||++.+++.+|++||+.+.... +...++..++++++++.+++. +..++++.+||||||||++||+||+.
T Consensus 71 i~~v~q~~~~~~~~tv~~nl~~~~~~-~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~~~~~ 147 (248)
T PRK03695 71 RAYLSQQQTPPFAMPVFQYLTLHQPD-KTRTEAVASALNEVAEALGLD--DKLGRSVNQLSGGEWQRVRLAAVVLQVWPD 147 (248)
T ss_pred eEEecccCccCCCccHHHHHHhcCcc-CCCcHHHHHHHHHHHHHcCCH--hHhcCCcccCCHHHHHHHHHHHHHhccccc
Confidence 99999999888889999999876322 223344567789999999996 37799999999999999999999997
Q ss_pred ---CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHH
Q 007178 448 ---NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 517 (614)
Q Consensus 448 ---~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 517 (614)
+|+++||||||+|||+.+++.+.++|++++ +|+|||++||+++++..+||++++|++|+++..|+.+++.
T Consensus 148 ~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 148 INPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVL 221 (248)
T ss_pred cCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 679999999999999999999999999864 6899999999999999999999999999999999988764
No 220
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2.8e-44 Score=402.68 Aligned_cols=229 Identities=29% Similarity=0.444 Sum_probs=194.8
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEc-Cee---CCC-
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQ-GLD---IRT- 363 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~-G~~---i~~- 363 (614)
.++++++|++++|++.. ..++.+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++ |.+ +..
T Consensus 277 ~~~l~~~~l~~~~~~~~-~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~ 355 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVD-RGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKP 355 (520)
T ss_pred CceEEEeccEEEeccCC-CCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCcccccccc
Confidence 45799999999996310 012569999999999999999999999999999999999999999999996 643 221
Q ss_pred ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC---CcccccCCCCChhHHH
Q 007178 364 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG---GVADKQAGKYSGGMKR 437 (614)
Q Consensus 364 ---~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~---~~~~~~~~~LSgG~kq 437 (614)
.....++++||+||++.+++.+||+||+.+...+ +.+.++.+++++++++.++|.+. +..++++.+|||||||
T Consensus 356 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~q 434 (520)
T TIGR03269 356 GPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL-ELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERH 434 (520)
T ss_pred chhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHH
Confidence 1123456799999999999999999999875433 22333345678899999999631 2578999999999999
Q ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHH
Q 007178 438 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 515 (614)
Q Consensus 438 rl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~ 515 (614)
|++|||||+.+|++|||||||+|||+.+++.+++.|+++ ++ |+|||++|||++++.++|||+++|++|++++.|++++
T Consensus 435 rv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~ 514 (520)
T TIGR03269 435 RVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEE 514 (520)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999986 34 8999999999999999999999999999999999988
Q ss_pred HHHh
Q 007178 516 LKAR 519 (614)
Q Consensus 516 l~~~ 519 (614)
+.++
T Consensus 515 ~~~~ 518 (520)
T TIGR03269 515 IVEE 518 (520)
T ss_pred HHhh
Confidence 7654
No 221
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-44 Score=362.76 Aligned_cols=217 Identities=23% Similarity=0.457 Sum_probs=181.5
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhhc
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 370 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~~ 370 (614)
++++|++++|++ ++.+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. .....++
T Consensus 1 l~~~~l~~~~~~-----~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ 75 (236)
T cd03253 1 IEFENVTFAYDP-----GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRR 75 (236)
T ss_pred CEEEEEEEEeCC-----CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHh
Confidence 468999999963 2469999999999999999999999999999999999999999999999998854 3445667
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHH-----HHHHHHHHc--CCCCCCcccccCCCCChhHHHHHHHHH
Q 007178 371 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ-----AVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLSVAI 443 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~~~LSgG~kqrl~ia~ 443 (614)
.+||+||++.+++ .|++||+.+.... ....+..+ .+.+.++.+ ++. ...++++.+||||||||++|||
T Consensus 76 ~i~~~~q~~~~~~-~tv~~nl~~~~~~--~~~~~~~~~~~~~~l~~~~~~l~~~~~--~~~~~~~~~LS~G~~~rl~la~ 150 (236)
T cd03253 76 AIGVVPQDTVLFN-DTIGYNIRYGRPD--ATDEEVIEAAKAAQIHDKIMRFPDGYD--TIVGERGLKLSGGEKQRVAIAR 150 (236)
T ss_pred hEEEECCCChhhc-chHHHHHhhcCCC--CCHHHHHHHHHHcCcHHHHHhcccccc--chhhcCCCcCCHHHHHHHHHHH
Confidence 8999999999886 6999999875321 11111111 122333333 333 2457778999999999999999
Q ss_pred HHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 444 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 444 al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
||+.+|+++||||||+|||+.+++.+++.|++.++|+|||++||+++++.. |||+++|++|+++..|+.+++..+
T Consensus 151 aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~d~~~~l~~g~i~~~~~~~~~~~~ 225 (236)
T cd03253 151 AILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHEELLAK 225 (236)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh-CCEEEEEECCEEEeeCCHHHHhhc
Confidence 999999999999999999999999999999987569999999999999975 999999999999999998887653
No 222
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-44 Score=401.75 Aligned_cols=216 Identities=25% Similarity=0.406 Sum_probs=191.7
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc--HHH
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDR 367 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~--~~~ 367 (614)
++++++|++|.|++ +.+++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... ...
T Consensus 3 ~~l~~~~l~~~~~~------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~ 76 (501)
T PRK11288 3 PYLSFDGIGKTFPG------VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAA 76 (501)
T ss_pred ceEEEeeeEEEECC------EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHH
Confidence 47999999999973 4699999999999999999999999999999999999999999999999988532 234
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhh--hcC-CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 007178 368 IYTSMGVCPQEDLLWETLTGREHLLFYGR--LKN-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 444 (614)
Q Consensus 368 ~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~--~~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~a 444 (614)
.++.+||+||++.+++.+|++||+.+... ..+ ....+.+++++++++.+|+. ...++++.+||||||||++||||
T Consensus 77 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGq~qrv~lara 154 (501)
T PRK11288 77 LAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVD--IDPDTPLKYLSIGQRQMVEIAKA 154 (501)
T ss_pred HhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCC--CCcCCchhhCCHHHHHHHHHHHH
Confidence 56789999999999999999999987532 112 23345567889999999996 36789999999999999999999
Q ss_pred HhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCH
Q 007178 445 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 513 (614)
Q Consensus 445 l~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~ 513 (614)
|+.+|+++||||||+|||+.+++.+++.|+++ ++|+|||++||+++++..+|||+++|++|+++..++.
T Consensus 155 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 155 LARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 99999999999999999999999999999986 4689999999999999999999999999999877653
No 223
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=2.8e-44 Score=359.99 Aligned_cols=201 Identities=29% Similarity=0.415 Sum_probs=176.4
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcc
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 371 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ 371 (614)
+.++|++++|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 23 l~~~~~~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~-------- 88 (224)
T cd03220 23 LGILGRKGEVGE------FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL-------- 88 (224)
T ss_pred hhhhhhhhhcCC------eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchh--------
Confidence 678889998873 679999999999999999999999999999999999999999999999987531
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCE
Q 007178 372 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 451 (614)
Q Consensus 372 ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~v 451 (614)
..+...+++.+|++||+.+.....+....+.+++++++++.+++. +..++++.+||||||||++||||++.+|++
T Consensus 89 ---~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~laral~~~p~l 163 (224)
T cd03220 89 ---LGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELG--DFIDLPVKTYSSGMKARLAFAIATALEPDI 163 (224)
T ss_pred ---hcccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh--hhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 111234456789999999876555544455566788999999996 478999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEc
Q 007178 452 VYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 511 (614)
Q Consensus 452 llLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g 511 (614)
+||||||+|||+.+++.+++.|++. ++|+|||++||+++++..+|||+++|++|++++.|
T Consensus 164 lllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 164 LLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999986 45899999999999999999999999999998765
No 224
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.9e-44 Score=403.97 Aligned_cols=221 Identities=28% Similarity=0.401 Sum_probs=193.4
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCC--CCCccEEEEc------------
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT--RTTSGTAYVQ------------ 357 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~--~p~sG~i~i~------------ 357 (614)
|+++|++|+|++ +.+++|+||++++||++||+||||||||||+|+|+|++ +|++|+|.++
T Consensus 1 l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~ 74 (520)
T TIGR03269 1 IEVKNLTKKFDG------KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVER 74 (520)
T ss_pred CEEEEEEEEECC------eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccc
Confidence 468999999963 56999999999999999999999999999999999997 7999999997
Q ss_pred -----------CeeCC-------C-c---HHHhhcceEEEcCC-CCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHH
Q 007178 358 -----------GLDIR-------T-D---MDRIYTSMGVCPQE-DLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLK 414 (614)
Q Consensus 358 -----------G~~i~-------~-~---~~~~~~~ig~~~Q~-~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~ 414 (614)
|.++. . . ....++.+||+||+ +.+++.+|++||+.+.....+.+.++.++++.++++
T Consensus 75 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~ 154 (520)
T TIGR03269 75 PSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIE 154 (520)
T ss_pred ccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 33221 0 0 12346789999997 688899999999998665555555556678999999
Q ss_pred HcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHH
Q 007178 415 SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEA 492 (614)
Q Consensus 415 ~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~-~g~tIil~TH~~~e~ 492 (614)
.+||. +..++++++||||||||++|||||+.+|++|||||||+|||+.+++.++++|+++ + .|+|||++|||++++
T Consensus 155 ~~gl~--~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~ 232 (520)
T TIGR03269 155 MVQLS--HRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVI 232 (520)
T ss_pred HcCCh--hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH
Confidence 99996 3779999999999999999999999999999999999999999999999999986 4 489999999999999
Q ss_pred HhhCCEEEEEeCCEEEEEcCHHHHHHhc
Q 007178 493 EALCDRLGIFVDGSLQCIGNPKELKARY 520 (614)
Q Consensus 493 ~~l~dri~il~~G~l~~~g~~~~l~~~~ 520 (614)
..+|||+++|++|+++..|+++++..++
T Consensus 233 ~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 260 (520)
T TIGR03269 233 EDLSDKAIWLENGEIKEEGTPDEVVAVF 260 (520)
T ss_pred HHhcCEEEEEeCCEEeeecCHHHHHHHH
Confidence 9999999999999999999998876654
No 225
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.8e-44 Score=360.30 Aligned_cols=208 Identities=20% Similarity=0.392 Sum_probs=178.1
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhhc
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 370 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~~ 370 (614)
++++|++++|++. ++.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. .....++
T Consensus 3 l~~~~l~~~~~~~----~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 78 (221)
T cd03244 3 IEFKNVSLRYRPN----LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRS 78 (221)
T ss_pred EEEEEEEEecCCC----CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhh
Confidence 7899999999742 2469999999999999999999999999999999999999999999999998753 3345677
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHHH
Q 007178 371 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLSV 441 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~i 441 (614)
.+||+||++.+++ .|++||+.+... .. .+++.++++.+++.+ +...++++.+||||||||++|
T Consensus 79 ~i~~~~q~~~l~~-~tv~enl~~~~~---~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~l 150 (221)
T cd03244 79 RISIIPQDPVLFS-GTIRSNLDPFGE---YS----DEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCL 150 (221)
T ss_pred hEEEECCCCcccc-chHHHHhCcCCC---CC----HHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHH
Confidence 8999999999887 599999975421 11 234555566666532 012356889999999999999
Q ss_pred HHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcC
Q 007178 442 AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 512 (614)
Q Consensus 442 a~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~ 512 (614)
||||+.+|+++||||||+|||+.+++.+++.|++.++++|||++||+++++.. ||++++|++|+++..|+
T Consensus 151 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 151 ARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID-SDRILVLDKGRVVEFDS 220 (221)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCeEEecCC
Confidence 99999999999999999999999999999999987778999999999999976 99999999999998875
No 226
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-44 Score=401.68 Aligned_cols=215 Identities=23% Similarity=0.373 Sum_probs=190.1
Q ss_pred EEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc--HHHhhcc
Q 007178 294 SDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDRIYTS 371 (614)
Q Consensus 294 ~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~--~~~~~~~ 371 (614)
++|++|+|++ +.+++|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ....++.
T Consensus 1 ~~nl~~~~~~------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 74 (491)
T PRK10982 1 MSNISKSFPG------VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENG 74 (491)
T ss_pred CCceEEEeCC------EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 3689999973 5699999999999999999999999999999999999999999999999988532 2345678
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhh-hcCC--CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCC
Q 007178 372 MGVCPQEDLLWETLTGREHLLFYGR-LKNL--KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 448 (614)
Q Consensus 372 ig~~~Q~~~l~~~lTv~e~l~~~~~-~~~~--~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~ 448 (614)
+||+||++.+++.+||+||+.+... ..+. ..++..++++++++.+++. ...++++.+||||||||++|||||+.+
T Consensus 75 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGq~qrv~lA~al~~~ 152 (491)
T PRK10982 75 ISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDID--IDPRAKVATLSVSQMQMIEIAKAFSYN 152 (491)
T ss_pred EEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCC--CCccCchhhCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999987532 2221 2334456789999999996 368999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHH
Q 007178 449 PKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 516 (614)
Q Consensus 449 p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l 516 (614)
|+++||||||+|||+.+++.++++|+++ ++|+|||++||+++++..+|||+++|++|+++..|+++++
T Consensus 153 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 153 AKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhC
Confidence 9999999999999999999999999986 4689999999999999999999999999999999987664
No 227
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2.4e-44 Score=401.42 Aligned_cols=217 Identities=23% Similarity=0.434 Sum_probs=190.3
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEEcCeeCCCcH--HH
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT--TSGTAYVQGLDIRTDM--DR 367 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p--~sG~i~i~G~~i~~~~--~~ 367 (614)
++++|++|+|++ +.+++|+||++++||++||+||||||||||+|+|+|+++| ++|+|.++|+++.... ..
T Consensus 2 l~i~~l~~~~~~------~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~ 75 (500)
T TIGR02633 2 LEMKGIVKTFGG------VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDT 75 (500)
T ss_pred EEEEeEEEEeCC------eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHH
Confidence 789999999963 5699999999999999999999999999999999999987 7999999999886422 22
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhc--C--CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 007178 368 IYTSMGVCPQEDLLWETLTGREHLLFYGRLK--N--LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 443 (614)
Q Consensus 368 ~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~--~--~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~ 443 (614)
.++.+||+||++.+++.+|++||+.+..... + ...++.+++++++++.+++.+ ...++++++||||||||++||+
T Consensus 76 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgG~~qrv~iA~ 154 (500)
T TIGR02633 76 ERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDA-DNVTRPVGDYGGGQQQLVEIAK 154 (500)
T ss_pred HhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCC-CcccCchhhCCHHHHHHHHHHH
Confidence 4567999999999999999999998764332 1 233445567899999999963 2236789999999999999999
Q ss_pred HHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHH
Q 007178 444 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 515 (614)
Q Consensus 444 al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~ 515 (614)
||+.+|+++||||||+|||+.+++.+++.|+++ ++|+|||++||+++++..+|||+++|++|+++..|++++
T Consensus 155 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (500)
T TIGR02633 155 ALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMST 227 (500)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCccc
Confidence 999999999999999999999999999999986 468999999999999999999999999999999987754
No 228
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.5e-44 Score=387.74 Aligned_cols=217 Identities=25% Similarity=0.405 Sum_probs=197.9
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC--cHH
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT--DMD 366 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~--~~~ 366 (614)
.+.++++|++|+|++ .+||+|+||++++||++||+|.||||||||+|+|+|.++|++|+|.++|+.... ..+
T Consensus 6 ~~ll~~~~i~K~Fgg------V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~ 79 (500)
T COG1129 6 PPLLELRGISKSFGG------VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRD 79 (500)
T ss_pred cceeeeecceEEcCC------ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHH
Confidence 347899999999984 689999999999999999999999999999999999999999999999998852 344
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcC----CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHH
Q 007178 367 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKN----LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 442 (614)
Q Consensus 367 ~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~----~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia 442 (614)
.....|+.++|+..|.|+|||.||+.+...... ++++..++++.++|+.+++.. + .+.++++||.||||.|+||
T Consensus 80 A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~-~-~~~~v~~LsiaqrQ~VeIA 157 (500)
T COG1129 80 ALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDI-D-PDTLVGDLSIAQRQMVEIA 157 (500)
T ss_pred HHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCC-C-hhhhhhhCCHHHHHHHHHH
Confidence 556789999999999999999999987544322 466788899999999999963 3 8999999999999999999
Q ss_pred HHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCH
Q 007178 443 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 513 (614)
Q Consensus 443 ~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~ 513 (614)
||+..+++++|||||||.|++...+.+.+++++++ +|.+||++||.|+|+.++||||.||+||+.+..++.
T Consensus 158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeeccc
Confidence 99999999999999999999999999999999975 799999999999999999999999999999998873
No 229
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.2e-44 Score=353.98 Aligned_cols=194 Identities=21% Similarity=0.297 Sum_probs=169.7
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEEcCeeCCCcHHH
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR---TTSGTAYVQGLDIRTDMDR 367 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~---p~sG~i~i~G~~i~~~~~~ 367 (614)
.+.++|++|.|++.. .++.+++|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++......
T Consensus 3 ~~~~~~~~~~~~~~~--~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~ 80 (202)
T cd03233 3 TLSWRNISFTTGKGR--SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEK 80 (202)
T ss_pred eEEEEccEEEeccCC--CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhh
Confidence 478999999998642 24679999999999999999999999999999999999999 8999999999998654445
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhC
Q 007178 368 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 447 (614)
Q Consensus 368 ~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~ 447 (614)
.++.++|+||++.+++.+||+||+.+..... .++++.+||||||||++||+||+.
T Consensus 81 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-------------------------~~~~~~~LS~Ge~qrl~laral~~ 135 (202)
T cd03233 81 YPGEIIYVSEEDVHFPTLTVRETLDFALRCK-------------------------GNEFVRGISGGERKRVSIAEALVS 135 (202)
T ss_pred hcceEEEEecccccCCCCcHHHHHhhhhhhc-------------------------cccchhhCCHHHHHHHHHHHHHhh
Confidence 6778999999999999999999998753210 356788999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEE-EcCCHHHHHhhCCEEEEEeCCEEEEEc
Q 007178 448 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIIL-TTHSMEEAEALCDRLGIFVDGSLQCIG 511 (614)
Q Consensus 448 ~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~-g~tIil-~TH~~~e~~~l~dri~il~~G~l~~~g 511 (614)
+|+++||||||+|||+.+++.++++|+++ ++ +.|+|+ ++|+.+++.++||++++|++|+++..|
T Consensus 136 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 136 RASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999999999986 33 666555 556678999999999999999998754
No 230
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=2.6e-44 Score=354.34 Aligned_cols=197 Identities=27% Similarity=0.387 Sum_probs=177.1
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcc
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 371 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ 371 (614)
++++|+++.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++.......+++
T Consensus 1 l~i~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (201)
T cd03231 1 LEADELTCERDG------RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARG 74 (201)
T ss_pred CEEEEEEEEeCC------ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhh
Confidence 468999999973 56999999999999999999999999999999999999999999999999876544556788
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCE
Q 007178 372 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 451 (614)
Q Consensus 372 ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~v 451 (614)
+||+||++.+++.+|++||+.++... ..+++++++++.+++. +..++++.+||||||||+++||||+.+|++
T Consensus 75 i~~~~q~~~~~~~~tv~e~l~~~~~~------~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 75 LLYLGHAPGIKTTLSVLENLRFWHAD------HSDEQVEEALARVGLN--GFEDRPVAQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred eEEeccccccCCCcCHHHHHHhhccc------ccHHHHHHHHHHcCCh--hhhcCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999999886421 1245788999999996 367899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEE
Q 007178 452 VYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF 502 (614)
Q Consensus 452 llLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il 502 (614)
+||||||+|||+.+++.+++.|++. ++|+|+|++||+.++....|+|++.+
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 9999999999999999999999886 46899999999999999999999776
No 231
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-43 Score=363.57 Aligned_cols=218 Identities=22% Similarity=0.333 Sum_probs=192.0
Q ss_pred CeEEEEeEEEEcCCCC--------------CCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEE
Q 007178 290 HAIISDNLRKIYPGRD--------------GNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 355 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~--------------~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~ 355 (614)
..++++||+|.|.... ....+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~ 82 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVD 82 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEE
Confidence 3588999999886531 11346799999999999999999999999999999999999999999999
Q ss_pred EcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhH
Q 007178 356 VQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM 435 (614)
Q Consensus 356 i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~ 435 (614)
++|+ +++++|...+.+.+|++||+.+.....+...++..+.++++++.+++. +..++++.+|||||
T Consensus 83 ~~g~------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~Gq 148 (264)
T PRK13546 83 RNGE------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELG--EFIYQPVKKYSSGM 148 (264)
T ss_pred ECCE------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hhhcCCcccCCHHH
Confidence 9984 457788877888899999998765555555555566778889999996 47899999999999
Q ss_pred HHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHH
Q 007178 436 KRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPK 514 (614)
Q Consensus 436 kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~ 514 (614)
|||+++|+|++.+|+++||||||+|||+.+++.+++.+.+. ++|+|||++||+++++..+|||+++|++|++.+.|+++
T Consensus 149 ~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~ 228 (264)
T PRK13546 149 RAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELD 228 (264)
T ss_pred HHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999886 46899999999999999999999999999999999999
Q ss_pred HHHHhcC
Q 007178 515 ELKARYG 521 (614)
Q Consensus 515 ~l~~~~~ 521 (614)
++..++.
T Consensus 229 ~~~~~~~ 235 (264)
T PRK13546 229 DVLPKYE 235 (264)
T ss_pred HHHHHhH
Confidence 9887653
No 232
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.5e-44 Score=403.75 Aligned_cols=228 Identities=22% Similarity=0.368 Sum_probs=195.5
Q ss_pred CCeEEEEeEEEEcCCCCC-----CCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC
Q 007178 289 SHAIISDNLRKIYPGRDG-----NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT 363 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~-----~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~ 363 (614)
.++++++|+++.|++..+ ..++.+++|+||+|++||++||+||||||||||+|+|+|++ |++|+|+++|+++..
T Consensus 273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~ 351 (529)
T PRK15134 273 SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHN 351 (529)
T ss_pred CCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccc
Confidence 347999999999963100 01256999999999999999999999999999999999998 489999999998753
Q ss_pred c-H---HHhhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcC--CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhH
Q 007178 364 D-M---DRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKN--LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM 435 (614)
Q Consensus 364 ~-~---~~~~~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~~--~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~ 435 (614)
. . ...++++||+||++ .+++.+||+||+.+....++ .+..+.+++++++++.+++.+ +..++++.+|||||
T Consensus 352 ~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgG~ 430 (529)
T PRK15134 352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDP-ETRHRYPAEFSGGQ 430 (529)
T ss_pred cchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCH-HHHhcCCccCCHHH
Confidence 2 1 12357799999996 48889999999988654332 333445577899999999952 36799999999999
Q ss_pred HHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCH
Q 007178 436 KRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 513 (614)
Q Consensus 436 kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~ 513 (614)
||||+|||||+.+|+++||||||+|||+.+++.++++|+++ ++ |+|||++|||++++..+|||+++|++|++++.|++
T Consensus 431 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 510 (529)
T PRK15134 431 RQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDC 510 (529)
T ss_pred HHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCH
Confidence 99999999999999999999999999999999999999986 34 89999999999999999999999999999999999
Q ss_pred HHHHH
Q 007178 514 KELKA 518 (614)
Q Consensus 514 ~~l~~ 518 (614)
+++.+
T Consensus 511 ~~~~~ 515 (529)
T PRK15134 511 ERVFA 515 (529)
T ss_pred HHHhc
Confidence 88854
No 233
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=6.1e-44 Score=353.12 Aligned_cols=202 Identities=22% Similarity=0.393 Sum_probs=174.4
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 368 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~ 368 (614)
..++++|++++|++. ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...+.
T Consensus 5 ~~l~~~~l~~~~~~~----~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 5 GEIEVENLSVRYAPD----LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CeEEEEEEEEEeCCC----CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 358999999999742 2469999999999999999999999999999999999999999999999998753 33455
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCC
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 448 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~ 448 (614)
++.+||+||++.+++. |++||+.+.. ... .+++.+.++ + ++++.+||||||||+++|||++.+
T Consensus 81 ~~~i~~v~q~~~~~~~-tv~~~l~~~~---~~~----~~~~~~~l~---~------~~~~~~LS~G~~qrv~laral~~~ 143 (207)
T cd03369 81 RSSLTIIPQDPTLFSG-TIRSNLDPFD---EYS----DEEIYGALR---V------SEGGLNLSQGQRQLLCLARALLKR 143 (207)
T ss_pred HhhEEEEecCCcccCc-cHHHHhcccC---CCC----HHHHHHHhh---c------cCCCCcCCHHHHHHHHHHHHHhhC
Confidence 7789999999988875 9999997532 111 122334333 2 467899999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCH
Q 007178 449 PKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 513 (614)
Q Consensus 449 p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~ 513 (614)
|+++||||||+|||+.+++.+++.|++..+|+|+|++||+++++.. |||+++|++|++.+.|++
T Consensus 144 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~-~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 144 PRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID-YDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCEEEecCCC
Confidence 9999999999999999999999999987679999999999999976 999999999999988763
No 234
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.5e-44 Score=333.15 Aligned_cols=214 Identities=24% Similarity=0.383 Sum_probs=194.8
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc----HH
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MD 366 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~----~~ 366 (614)
.|++++++|.-+... ....+|++++|.|++||-++|+||+|||||||+-+++|+..|++|+|++.|+++.+. ..
T Consensus 6 ii~~~~l~ktvg~~~--~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA 83 (228)
T COG4181 6 IIEVHHLSKTVGQGE--GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARA 83 (228)
T ss_pred eeehhhhhhhhcCCC--cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHH
Confidence 688999999988643 357899999999999999999999999999999999999999999999999998642 22
Q ss_pred Hhh-cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 007178 367 RIY-TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 445 (614)
Q Consensus 367 ~~~-~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al 445 (614)
+.| +++|++||...|.|+||..||+..+..++|-...+..+.+.++|+.+||. +..+.++.+|||||||||+||||+
T Consensus 84 ~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg--~Rl~HyP~qLSGGEQQRVAiARAf 161 (228)
T COG4181 84 ALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLG--KRLTHYPAQLSGGEQQRVALARAF 161 (228)
T ss_pred HhhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcc--cccccCccccCchHHHHHHHHHHh
Confidence 233 68999999999999999999999999999876777788899999999997 478999999999999999999999
Q ss_pred hCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEE
Q 007178 446 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQC 509 (614)
Q Consensus 446 ~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~--~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~ 509 (614)
+..|++|+.||||.+||...-+++.+++-.+ ..|.|.+++|||...+.+ |+|.+-|.+|+++.
T Consensus 162 a~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~R-c~R~~r~~~G~l~~ 226 (228)
T COG4181 162 AGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAAR-CDRQLRLRSGRLVE 226 (228)
T ss_pred cCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHh-hhheeeeecceecc
Confidence 9999999999999999999999999999764 359999999999999876 99999999999975
No 235
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=6.3e-44 Score=400.55 Aligned_cols=227 Identities=19% Similarity=0.339 Sum_probs=194.7
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CccEEEEcCeeCCCc
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRTD 364 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~sG~i~i~G~~i~~~ 364 (614)
++++++|++++|++.. ..+.+++|+||++++||++||+||||||||||+|+|+|+++| ++|+|.++|+++...
T Consensus 4 ~~l~~~~l~~~~~~~~--~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~ 81 (529)
T PRK15134 4 PLLAIENLSVAFRQQQ--TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHA 81 (529)
T ss_pred ceEEEeceEEEecCCC--CceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccC
Confidence 3799999999996311 125799999999999999999999999999999999999987 799999999998542
Q ss_pred -HH---Hhh-cceEEEcCCCC--CCCCCCHHHHHHHHhhh-cCCCchhHHHHHHHHHHHcCCCCC-CcccccCCCCChhH
Q 007178 365 -MD---RIY-TSMGVCPQEDL--LWETLTGREHLLFYGRL-KNLKGPALTQAVEESLKSVNLFHG-GVADKQAGKYSGGM 435 (614)
Q Consensus 365 -~~---~~~-~~ig~~~Q~~~--l~~~lTv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~-~~~~~~~~~LSgG~ 435 (614)
.. ..| +++||+||++. +++.+|++||+.+.... .+.+..+.+++++++++.+||.+. ...++++.+|||||
T Consensus 82 ~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe 161 (529)
T PRK15134 82 SEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGE 161 (529)
T ss_pred CHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHH
Confidence 11 233 57999999974 67778999998865433 244455567789999999999631 13589999999999
Q ss_pred HHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCH
Q 007178 436 KRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 513 (614)
Q Consensus 436 kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~ 513 (614)
|||++|||||+.+|++|||||||+|||+.+++.++++|+++ ++ |+|||++||+++++..+||||++|++|+++..|++
T Consensus 162 ~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~ 241 (529)
T PRK15134 162 RQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRA 241 (529)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999986 34 89999999999999999999999999999999999
Q ss_pred HHHHH
Q 007178 514 KELKA 518 (614)
Q Consensus 514 ~~l~~ 518 (614)
+++.+
T Consensus 242 ~~~~~ 246 (529)
T PRK15134 242 ATLFS 246 (529)
T ss_pred HHHhh
Confidence 88743
No 236
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1.9e-44 Score=361.53 Aligned_cols=210 Identities=20% Similarity=0.384 Sum_probs=179.0
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHH
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDR 367 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~ 367 (614)
..+++++|++++|+++. ++.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ....
T Consensus 9 ~~~l~~~~l~~~~~~~~---~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~ 85 (226)
T cd03248 9 KGIVKFQNVTFAYPTRP---DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKY 85 (226)
T ss_pred CceEEEEEEEEEeCCCC---CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHH
Confidence 45799999999997421 2469999999999999999999999999999999999999999999999988753 2344
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhH-----HHHHHHHHHHc--CCCCCCcccccCCCCChhHHHHHH
Q 007178 368 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPAL-----TQAVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLS 440 (614)
Q Consensus 368 ~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~L~~~~~~~~~~~~LSgG~kqrl~ 440 (614)
.++.+||+||++.+++ .|++||+.+..... ...+. +..++++++.+ |+. ...++++.+||||||||++
T Consensus 86 ~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~~~l~~l~~gl~--~~~~~~~~~LSgG~~qrv~ 160 (226)
T cd03248 86 LHSKVSLVGQEPVLFA-RSLQDNIAYGLQSC--SFECVKEAAQKAHAHSFISELASGYD--TEVGEKGSQLSGGQKQRVA 160 (226)
T ss_pred HHhhEEEEecccHHHh-hhHHHHhccccCCC--CHHHHHHHHHHcCcHHHHHhcccccc--chhhcCCCcCCHHHHHHHH
Confidence 5678999999998887 59999998643211 11111 12356778888 775 3678899999999999999
Q ss_pred HHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEE
Q 007178 441 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSL 507 (614)
Q Consensus 441 ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l 507 (614)
||+||+.+|+++||||||+|||+.+++.+++.|++.++++|||++||++++++. |||+++|++|++
T Consensus 161 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~i 226 (226)
T cd03248 161 IARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVER-ADQILVLDGGRI 226 (226)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh-CCEEEEecCCcC
Confidence 999999999999999999999999999999999987667999999999999975 999999999974
No 237
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=1e-43 Score=361.07 Aligned_cols=220 Identities=21% Similarity=0.302 Sum_probs=185.6
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCC--CCCccEEEEcCeeCCCc-HH-
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT--RTTSGTAYVQGLDIRTD-MD- 366 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~--~p~sG~i~i~G~~i~~~-~~- 366 (614)
+++++|++|.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+. +|++|+|.++|+++... ..
T Consensus 1 ~i~~~nl~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 74 (248)
T PRK09580 1 MLSIKDLHVSVED------KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPED 74 (248)
T ss_pred CeEEEEEEEEeCC------eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHH
Confidence 4789999999973 46999999999999999999999999999999999995 69999999999987542 22
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHh-hhc---C---CCchhHHHHHHHHHHHcCCCCCCcccccCC-CCChhHHHH
Q 007178 367 RIYTSMGVCPQEDLLWETLTGREHLLFYG-RLK---N---LKGPALTQAVEESLKSVNLFHGGVADKQAG-KYSGGMKRR 438 (614)
Q Consensus 367 ~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~-~~~---~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~-~LSgG~kqr 438 (614)
..++.++|++|++.+++.+|+.+++.... .+. . ....+..+.++++++.+++.+ +..++++. +||||||||
T Consensus 75 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~LS~G~~qr 153 (248)
T PRK09580 75 RAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPE-DLLTRSVNVGFSGGEKKR 153 (248)
T ss_pred HhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCCh-hhcccCCCCCCCHHHHHH
Confidence 23457999999999988888877765431 111 1 111233567788999999953 35677775 899999999
Q ss_pred HHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhh-CCEEEEEeCCEEEEEcCHHHH
Q 007178 439 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEAL-CDRLGIFVDGSLQCIGNPKEL 516 (614)
Q Consensus 439 l~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l-~dri~il~~G~l~~~g~~~~l 516 (614)
++||||++.+|+++||||||+|||+.+++.+.+.|++++ +|+|||++||++++++.+ ||++++|++|+++..|+++.+
T Consensus 154 v~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 154 NDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 999999999999999999999999999999999998864 589999999999999987 899999999999999998865
Q ss_pred H
Q 007178 517 K 517 (614)
Q Consensus 517 ~ 517 (614)
.
T Consensus 234 ~ 234 (248)
T PRK09580 234 K 234 (248)
T ss_pred H
Confidence 3
No 238
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-44 Score=400.65 Aligned_cols=224 Identities=21% Similarity=0.392 Sum_probs=192.5
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-CCccEEEEcCeeCCCc--H
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-TTSGTAYVQGLDIRTD--M 365 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-p~sG~i~i~G~~i~~~--~ 365 (614)
..+++++|++|.|+... ++.+++|+||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|+++... .
T Consensus 257 ~~~l~~~~l~~~~~~~~---~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~ 333 (506)
T PRK13549 257 EVILEVRNLTAWDPVNP---HIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQ 333 (506)
T ss_pred CceEEEecCcccccccc---ccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHH
Confidence 34799999999995211 2469999999999999999999999999999999999999 5999999999987532 2
Q ss_pred HHhhcceEEEcCCC---CCCCCCCHHHHHHHHh--hhcC---CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHH
Q 007178 366 DRIYTSMGVCPQED---LLWETLTGREHLLFYG--RLKN---LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKR 437 (614)
Q Consensus 366 ~~~~~~ig~~~Q~~---~l~~~lTv~e~l~~~~--~~~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kq 437 (614)
...++.+||+||++ .+++.+|+.||+.+.. .+.+ .+.++.+++++++++.+++.. +..++++++|||||||
T Consensus 334 ~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgG~kq 412 (506)
T PRK13549 334 QAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKT-ASPELAIARLSGGNQQ 412 (506)
T ss_pred HHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccC-CCcccccccCCHHHHH
Confidence 34567899999995 5788899999998753 1221 123344567899999999952 3679999999999999
Q ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHH
Q 007178 438 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 516 (614)
Q Consensus 438 rl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l 516 (614)
|++|||||+.+|+++||||||+|||+.+++.++++|+++ ++|+|||++|||+++++.+|||+++|++|+++..|+++++
T Consensus 413 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 413 KAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNL 492 (506)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccC
Confidence 999999999999999999999999999999999999986 4699999999999999999999999999999999887654
No 239
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-44 Score=337.72 Aligned_cols=222 Identities=27% Similarity=0.419 Sum_probs=201.2
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhc
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 370 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~ 370 (614)
++.+++++-+|++. ...+++|+|++|.+||.++++||+|||||||+|+++|+.+|+.|+|.++|..+...-.+
T Consensus 3 ~l~~~~~sl~y~g~----~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgae--- 75 (259)
T COG4525 3 MLNVSHLSLSYEGK----PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAE--- 75 (259)
T ss_pred eeehhheEEecCCc----chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCcc---
Confidence 46788999999864 25699999999999999999999999999999999999999999999999998654322
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCC
Q 007178 371 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 450 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~ 450 (614)
-|++||++.|+|.+|+.||+.|..+++|+.+.+..+.+.+.+..+||.+ ..++++-+||||||||+.|||||+.+|+
T Consensus 76 -rgvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~--~~~~~i~qLSGGmrQRvGiARALa~eP~ 152 (259)
T COG4525 76 -RGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEG--AEHKYIWQLSGGMRQRVGIARALAVEPQ 152 (259)
T ss_pred -ceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCccc--ccccceEeecchHHHHHHHHHHhhcCcc
Confidence 3899999999999999999999999999999999999999999999974 7799999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHhhCCEEEEEeC--CEEEEEcCHHHHHHhcCCc
Q 007178 451 VVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVD--GSLQCIGNPKELKARYGGS 523 (614)
Q Consensus 451 vllLDEPtsgLD~~~~~~i~~~l~~~-~-~g~tIil~TH~~~e~~~l~dri~il~~--G~l~~~g~~~~l~~~~~~~ 523 (614)
+|+||||+++||.-.|+++.+++.++ + .|+.++++||+++|+.-+++|+++|+. ||++..-+++ .-.+|..+
T Consensus 153 ~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d-f~rR~aag 228 (259)
T COG4525 153 LLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD-FARRYAAG 228 (259)
T ss_pred eEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC-HHHHhhcC
Confidence 99999999999999999999999885 4 599999999999999999999999985 6888877766 44555443
No 240
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=1.8e-44 Score=409.73 Aligned_cols=218 Identities=24% Similarity=0.458 Sum_probs=191.6
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 368 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~ 368 (614)
..|+++|++++|+.. +..+|+|+|++|++||.+||+|+||||||||+|+|+|+++|++|+|.+||.|+.. +...+
T Consensus 470 g~I~~~nvsf~y~~~----~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~l 545 (709)
T COG2274 470 GEIEFENVSFRYGPD----DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASL 545 (709)
T ss_pred ceEEEEEEEEEeCCC----CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHH
Confidence 469999999999863 2479999999999999999999999999999999999999999999999999975 67889
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 439 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 439 (614)
|++|||++|++.+|.+ |++||+.+..- ....+++.++++..|..+ +.........||||||||+
T Consensus 546 R~~ig~V~Q~~~Lf~g-SI~eNi~l~~p------~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrl 618 (709)
T COG2274 546 RRQVGYVLQDPFLFSG-SIRENIALGNP------EATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRL 618 (709)
T ss_pred HhheeEEcccchhhcC-cHHHHHhcCCC------CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHH
Confidence 9999999999999987 99999997532 111244455555555431 1233456678999999999
Q ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 440 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 440 ~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
+|||||+++|+|||||||||+||+.+.+.+.+.|.+..+|+|+|++||++..+. .||||++|++|+++.+|+.+++.+.
T Consensus 619 alARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~-~adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 619 ALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIR-SADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred HHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhh-hccEEEEccCCceeccCCHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999886 5999999999999999999999987
No 241
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=5e-44 Score=378.07 Aligned_cols=215 Identities=27% Similarity=0.447 Sum_probs=197.3
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCC--CcHHH
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR--TDMDR 367 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~--~~~~~ 367 (614)
+.++++|++|+|++ ..|.+||||+|++|||.||+|.||||||||++||.|+++||+|+|+++|+.+. ...+.
T Consensus 3 ~~l~~~~itK~f~~------~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA 76 (501)
T COG3845 3 PALEMRGITKRFPG------VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDA 76 (501)
T ss_pred ceEEEeccEEEcCC------EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHH
Confidence 46899999999984 78999999999999999999999999999999999999999999999999875 45677
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhh---cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 007178 368 IYTSMGVCPQEDLLWETLTGREHLLFYGRL---KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 444 (614)
Q Consensus 368 ~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~a 444 (614)
++..||+++||+.|+|.+||.||+.++..- ...+.++.+++++++.+..||.- ..|+++.+||-|+|||+.|-+|
T Consensus 77 ~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~v--dp~~~V~dLsVG~qQRVEIlKa 154 (501)
T COG3845 77 IRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPV--DPDAKVADLSVGEQQRVEILKA 154 (501)
T ss_pred HHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCC--CccceeecCCcchhHHHHHHHH
Confidence 888999999999999999999999987632 23456778899999999999974 5799999999999999999999
Q ss_pred HhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcC
Q 007178 445 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 512 (614)
Q Consensus 445 l~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~ 512 (614)
|..+|++|||||||+-|-|...+++.+.++++ ++|+|||++||-++|+.++|||+.+|++||++..-.
T Consensus 155 Lyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 155 LYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 99999999999999999999999999999997 579999999999999999999999999999765433
No 242
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=9.7e-44 Score=361.99 Aligned_cols=203 Identities=25% Similarity=0.433 Sum_probs=179.2
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 369 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~ 369 (614)
++++++|++|.|++ +.+++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++| +
T Consensus 3 ~~l~~~~l~~~~~~------~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~----------~ 66 (251)
T PRK09544 3 SLVSLENVSVSFGQ------RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG----------K 66 (251)
T ss_pred cEEEEeceEEEECC------ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC----------c
Confidence 36999999999973 4699999999999999999999999999999999999999999999987 2
Q ss_pred cceEEEcCCCCCCCC--CCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhC
Q 007178 370 TSMGVCPQEDLLWET--LTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 447 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~--lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~ 447 (614)
..+||+||++.+++. .|+++++.+.. +. ..+++.++++.+++. +..++++.+||||||||++||+||+.
T Consensus 67 ~~i~~v~q~~~~~~~l~~~~~~~~~~~~---~~----~~~~~~~~l~~~gl~--~~~~~~~~~LSgGq~qrv~laral~~ 137 (251)
T PRK09544 67 LRIGYVPQKLYLDTTLPLTVNRFLRLRP---GT----KKEDILPALKRVQAG--HLIDAPMQKLSGGETQRVLLARALLN 137 (251)
T ss_pred cCEEEeccccccccccChhHHHHHhccc---cc----cHHHHHHHHHHcCCh--HHHhCChhhCCHHHHHHHHHHHHHhc
Confidence 469999999888776 47888775421 11 134678899999996 47899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 448 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 448 ~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
+|+++||||||+|||+.+++.+++.|+++ ++ |+|||++||+++++..+|||+++|+ |++++.|+++++.+
T Consensus 138 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~-~~i~~~g~~~~~~~ 209 (251)
T PRK09544 138 RPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLN-HHICCSGTPEVVSL 209 (251)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEC-CceEeeCCHHHHhC
Confidence 99999999999999999999999999986 34 8999999999999999999999996 47999999988743
No 243
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=1.2e-43 Score=347.77 Aligned_cols=188 Identities=31% Similarity=0.543 Sum_probs=166.7
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCC--CCCccEEEEcCeeCCCcHHHh
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT--RTTSGTAYVQGLDIRTDMDRI 368 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~--~p~sG~i~i~G~~i~~~~~~~ 368 (614)
.++++|++|+|++..+..++.+++|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|+++.. ...
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~--~~~ 80 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK--RSF 80 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch--Hhh
Confidence 488999999997421011256999999999999999999999999999999999999 9999999999998864 255
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCC
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 448 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~ 448 (614)
++.++|+||++.+++.+|++||+.+..+.. +||||||||++|||||+.+
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------~LS~G~~qrv~laral~~~ 129 (194)
T cd03213 81 RKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------GLSGGERKRVSIALELVSN 129 (194)
T ss_pred hheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------cCCHHHHHHHHHHHHHHcC
Confidence 678999999999999999999997642110 7999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHH-HHHhhCCEEEEEeCCEEEEEc
Q 007178 449 PKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSME-EAEALCDRLGIFVDGSLQCIG 511 (614)
Q Consensus 449 p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~-e~~~l~dri~il~~G~l~~~g 511 (614)
|+++||||||+|||+.+++.++++|++.+ +|+|||++||+++ ++..+|||+++|++|++++.|
T Consensus 130 p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 130 PSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999864 5999999999996 788899999999999998754
No 244
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-44 Score=328.50 Aligned_cols=218 Identities=26% Similarity=0.426 Sum_probs=201.7
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeC--CC-----
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI--RT----- 363 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i--~~----- 363 (614)
.|+++|+++.||. ..+|.|++|+-++||.+.|+||+|||||||+|.|.-+.-|.+|+..|.|... ++
T Consensus 2 sirv~~in~~yg~------~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k 75 (242)
T COG4161 2 SIQLNGINCFYGA------HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDK 75 (242)
T ss_pred ceEEccccccccc------chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHH
Confidence 4899999999984 6799999999999999999999999999999999999999999999988643 22
Q ss_pred cHHHhhcceEEEcCCCCCCCCCCHHHHHHH-HhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHH
Q 007178 364 DMDRIYTSMGVCPQEDLLWETLTGREHLLF-YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 442 (614)
Q Consensus 364 ~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~-~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia 442 (614)
...++|+++|+++|...|||.|||.||+.- +.+..|+++++.+.++.++|+.+.|. +++|+.+-.|||||+||++||
T Consensus 76 ~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~--~~adr~plhlsggqqqrvaia 153 (242)
T COG4161 76 AIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLK--PYADRYPLHLSGGQQQRVAIA 153 (242)
T ss_pred HHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccc--cccccCceecccchhhhHHHH
Confidence 235678999999999999999999999865 56778999999999999999999997 599999999999999999999
Q ss_pred HHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHH
Q 007178 443 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 516 (614)
Q Consensus 443 ~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l 516 (614)
|||+.+|+++++||||++|||+-..++.++|+++. .|.|-+++||..+.+...+.|++.|++|+|++.|+....
T Consensus 154 ralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~f 228 (242)
T COG4161 154 RALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhc
Confidence 99999999999999999999999999999999986 599999999999999999999999999999999987654
No 245
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.8e-44 Score=339.19 Aligned_cols=223 Identities=26% Similarity=0.379 Sum_probs=203.8
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcC-eeCCCc--HH
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG-LDIRTD--MD 366 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G-~~i~~~--~~ 366 (614)
..+.++|++.+|++ ..||+|+||++.+||.-+|+|||||||||++.+|+|-.+|+.|+++++| .|+.+. .+
T Consensus 4 ~iL~~~~vsVsF~G------F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~ 77 (249)
T COG4674 4 IILYLDGVSVSFGG------FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR 77 (249)
T ss_pred ceEEEeceEEEEcc------eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHH
Confidence 46899999999985 6799999999999999999999999999999999999999999999999 888753 34
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhhhc--------CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHH
Q 007178 367 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLK--------NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 438 (614)
Q Consensus 367 ~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~--------~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqr 438 (614)
-+|..||-=||.|..|+.+||+|||.+....+ .....+.+++++++|+..||.+ .+++.+..||.||||+
T Consensus 78 IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~--~~~~~A~~LSHGqKQw 155 (249)
T COG4674 78 IARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGD--ERDRLAALLSHGQKQW 155 (249)
T ss_pred HHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccch--hhhhhhhhhccchhhh
Confidence 45778899999999999999999999865432 2234556779999999999974 8999999999999999
Q ss_pred HHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 439 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 439 l~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
+.|++-++++|++|+||||++||....+.+.-++++.++.+++|+++.|||+.+.++|++|.+|+.|.+.|.|+.+++.+
T Consensus 156 LEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~~ 235 (249)
T COG4674 156 LEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQN 235 (249)
T ss_pred hhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred hc
Q 007178 519 RY 520 (614)
Q Consensus 519 ~~ 520 (614)
..
T Consensus 236 dp 237 (249)
T COG4674 236 DP 237 (249)
T ss_pred Cc
Confidence 53
No 246
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=8.5e-44 Score=343.98 Aligned_cols=178 Identities=27% Similarity=0.509 Sum_probs=161.2
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcc
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 371 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ 371 (614)
++++|++++|++. ++.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.......++.
T Consensus 1 i~~~~~~~~~~~~----~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (178)
T cd03247 1 LSINNVSFSYPEQ----EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSL 76 (178)
T ss_pred CEEEEEEEEeCCC----CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhh
Confidence 4689999999742 136999999999999999999999999999999999999999999999999874333445678
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCE
Q 007178 372 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 451 (614)
Q Consensus 372 ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~v 451 (614)
+||+||++.+++ .|++||+ +.+||||||||++||||++.+|++
T Consensus 77 i~~~~q~~~~~~-~tv~~~i------------------------------------~~~LS~G~~qrv~laral~~~p~~ 119 (178)
T cd03247 77 ISVLNQRPYLFD-TTLRNNL------------------------------------GRRFSGGERQRLALARILLQDAPI 119 (178)
T ss_pred EEEEccCCeeec-ccHHHhh------------------------------------cccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999998886 6999987 567999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEc
Q 007178 452 VYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 511 (614)
Q Consensus 452 llLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g 511 (614)
+||||||+|||+.+++.+++.|++.++++|||++||++++++ .|||+++|++|++++.|
T Consensus 120 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 120 VLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE-HMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEecC
Confidence 999999999999999999999998767899999999999997 59999999999998754
No 247
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.6e-43 Score=361.79 Aligned_cols=219 Identities=20% Similarity=0.302 Sum_probs=184.6
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 368 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~ 368 (614)
..++++|++++|++. ++.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|+++.. .....
T Consensus 18 ~~i~~~~l~~~~~~~----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 93 (257)
T cd03288 18 GEIKIHDLCVRYENN----LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTL 93 (257)
T ss_pred ceEEEEEEEEEeCCC----CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHH
Confidence 469999999999742 2469999999999999999999999999999999999999999999999998854 34456
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHH-----HHHHHHHHHc--CCCCCCcccccCCCCChhHHHHHHH
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALT-----QAVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLSV 441 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~L~~~~~~~~~~~~LSgG~kqrl~i 441 (614)
++.+||+||++.+++. |++||+..... ....... ..+++.++.+ ++. ...++++.+||||||||++|
T Consensus 94 ~~~i~~v~q~~~l~~~-tv~~nl~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~l~--~~~~~~~~~LS~G~~qrl~l 167 (257)
T cd03288 94 RSRLSIILQDPILFSG-SIRFNLDPECK---CTDDRLWEALEIAQLKNMVKSLPGGLD--AVVTEGGENFSVGQRQLFCL 167 (257)
T ss_pred hhhEEEECCCCccccc-HHHHhcCcCCC---CCHHHHHHHHHHhCcHHHHhhcccccC--cEeccCCCcCCHHHHHHHHH
Confidence 7889999999998875 99999864211 0111111 1233444444 454 35667789999999999999
Q ss_pred HHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 442 AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 442 a~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
||||+.+|+++||||||+|||+.+++.+++.+++..+++|||++||+++++.. |||+++|++|++++.|+++++.+.
T Consensus 168 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~dri~~l~~G~i~~~g~~~~~~~~ 244 (257)
T cd03288 168 ARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILD-ADLVLVLSRGILVECDTPENLLAQ 244 (257)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHh-CCEEEEEECCEEEEeCCHHHHHhc
Confidence 99999999999999999999999999999999987779999999999999986 999999999999999999988654
No 248
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-43 Score=341.05 Aligned_cols=172 Identities=44% Similarity=0.818 Sum_probs=159.2
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcc
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 371 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ 371 (614)
++++|++++|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.......++.
T Consensus 1 l~~~~l~~~~~~------~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (173)
T cd03230 1 IEVRNLSKRYGK------KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRR 74 (173)
T ss_pred CEEEEEEEEECC------eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhcc
Confidence 468999999963 46999999999999999999999999999999999999999999999999886433455678
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCE
Q 007178 372 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 451 (614)
Q Consensus 372 ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~v 451 (614)
+||+||++.+++.+|++||+. ||||||||++|||||+.+|++
T Consensus 75 i~~~~q~~~~~~~~tv~~~~~--------------------------------------LS~G~~qrv~laral~~~p~i 116 (173)
T cd03230 75 IGYLPEEPSLYENLTVRENLK--------------------------------------LSGGMKQRLALAQALLHDPEL 116 (173)
T ss_pred EEEEecCCccccCCcHHHHhh--------------------------------------cCHHHHHHHHHHHHHHcCCCE
Confidence 999999999999999999974 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCEE
Q 007178 452 VYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSL 507 (614)
Q Consensus 452 llLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~l 507 (614)
+||||||+|||+.+++.+++.|++. ++|.|+|++||+++++..+||++++|++|++
T Consensus 117 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 117 LILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999999986 4689999999999999999999999999974
No 249
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.8e-44 Score=397.76 Aligned_cols=216 Identities=20% Similarity=0.415 Sum_probs=187.4
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc--HH
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MD 366 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~--~~ 366 (614)
.++++++|++|.|+ .+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ..
T Consensus 263 ~~~l~~~~l~~~~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~ 334 (510)
T PRK09700 263 ETVFEVRNVTSRDR--------KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLD 334 (510)
T ss_pred CcEEEEeCccccCC--------CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHH
Confidence 34799999999763 289999999999999999999999999999999999999999999999987542 23
Q ss_pred HhhcceEEEcCC---CCCCCCCCHHHHHHHHhhhc--------CC-CchhHHHHHHHHHHHcCCCCCCcccccCCCCChh
Q 007178 367 RIYTSMGVCPQE---DLLWETLTGREHLLFYGRLK--------NL-KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG 434 (614)
Q Consensus 367 ~~~~~ig~~~Q~---~~l~~~lTv~e~l~~~~~~~--------~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG 434 (614)
..++++||+||+ ..+++++|++||+.+....+ +. ..++.+++++++++.+++.. +..++++++||||
T Consensus 335 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgG 413 (510)
T PRK09700 335 AVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKC-HSVNQNITELSGG 413 (510)
T ss_pred HHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCC-CCccCccccCChH
Confidence 456789999998 46889999999998753211 11 12233456889999999952 3689999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCH
Q 007178 435 MKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 513 (614)
Q Consensus 435 ~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~ 513 (614)
||||++|||||+.+|++|||||||+|||+.+++.++++|+++ ++|+|||++|||++++..+|||+++|++|+++..++.
T Consensus 414 q~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 414 NQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence 999999999999999999999999999999999999999986 4699999999999999999999999999999987754
No 250
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=7.7e-44 Score=397.36 Aligned_cols=221 Identities=21% Similarity=0.365 Sum_probs=190.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-CccEEEEcCeeCCC--cHH
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-TSGTAYVQGLDIRT--DMD 366 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-~sG~i~i~G~~i~~--~~~ 366 (614)
.+++++|+++.|++. +++.+++|+||+|++||++||+||||||||||+|+|+|+++| ++|+|.++|+++.. ...
T Consensus 256 ~~l~~~~l~~~~~~~---~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~ 332 (500)
T TIGR02633 256 VILEARNLTCWDVIN---PHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQ 332 (500)
T ss_pred ceEEEeCCccccccc---ccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHH
Confidence 479999999999421 024699999999999999999999999999999999999995 89999999998853 224
Q ss_pred HhhcceEEEcCCC---CCCCCCCHHHHHHHHhh--hc---CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHH
Q 007178 367 RIYTSMGVCPQED---LLWETLTGREHLLFYGR--LK---NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 438 (614)
Q Consensus 367 ~~~~~ig~~~Q~~---~l~~~lTv~e~l~~~~~--~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqr 438 (614)
..++++||+||++ .+++.+|++||+.+... .. +....+.+++++++++.+++.+ ...++++.+||||||||
T Consensus 333 ~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGqkqr 411 (500)
T TIGR02633 333 AIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKT-ASPFLPIGRLSGGNQQK 411 (500)
T ss_pred HHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccC-CCccCccccCCHHHHHH
Confidence 4567899999995 58999999999987431 21 1122334567889999999952 35799999999999999
Q ss_pred HHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHH
Q 007178 439 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPK 514 (614)
Q Consensus 439 l~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~ 514 (614)
++|||||+.+|+++||||||+|||+.+++.++++|+++ ++|+|||++|||++++..+|||+++|++|++++.++..
T Consensus 412 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~ 488 (500)
T TIGR02633 412 AVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNH 488 (500)
T ss_pred HHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccc
Confidence 99999999999999999999999999999999999986 46999999999999999999999999999999877544
No 251
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.3e-43 Score=350.96 Aligned_cols=198 Identities=27% Similarity=0.385 Sum_probs=175.7
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhc
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 370 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~ 370 (614)
+++++|++|.|++ +.+++|+||+|++||++||+||||||||||+++|+|+.+|++|+|.++|+++.. . ..++
T Consensus 2 ~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-~-~~~~ 73 (207)
T PRK13539 2 MLEGEDLACVRGG------RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD-P-DVAE 73 (207)
T ss_pred EEEEEeEEEEECC------eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc-h-hhHh
Confidence 5899999999973 469999999999999999999999999999999999999999999999998642 2 2677
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCC
Q 007178 371 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 450 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~ 450 (614)
.+||++|++.+++.+|++||+.+.....+.. +++++++++.+|+.+ ..++++++||||||||++||||++.+|+
T Consensus 74 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~----~~~~~~~l~~~~l~~--~~~~~~~~LS~G~~qrl~la~al~~~p~ 147 (207)
T PRK13539 74 ACHYLGHRNAMKPALTVAENLEFWAAFLGGE----ELDIAAALEAVGLAP--LAHLPFGYLSAGQKRRVALARLLVSNRP 147 (207)
T ss_pred hcEEecCCCcCCCCCcHHHHHHHHHHhcCCc----HHHHHHHHHHcCCHH--HHcCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 8999999998888999999998865543321 245789999999963 6789999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeC
Q 007178 451 VVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVD 504 (614)
Q Consensus 451 vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~ 504 (614)
++||||||+|||+.+++++++.|++. ++|+|||++||++++++. |+++-+..
T Consensus 148 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~--~~~~~~~~ 200 (207)
T PRK13539 148 IWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG--ARELDLGP 200 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc--CcEEeecC
Confidence 99999999999999999999999985 569999999999999986 88876643
No 252
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.4e-45 Score=343.33 Aligned_cols=219 Identities=26% Similarity=0.465 Sum_probs=202.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhh
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 369 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~ 369 (614)
||+++|++|+|++ +.+++|+|++|++|.+++++||||||||||+.+++.|+++++|+|+++|.++.. ..+.+.
T Consensus 1 MI~i~nv~K~y~~------~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LA 74 (252)
T COG4604 1 MITIENVSKSYGT------KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELA 74 (252)
T ss_pred CeeehhhhHhhCC------EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHH
Confidence 5889999999984 789999999999999999999999999999999999999999999999999965 566677
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhh---cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHh
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGRL---KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 446 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~ 446 (614)
+.++.+-|.+.+-..+||+|-+.|+ |+ +|...++.++.++++++.++|+ +..|++..+||||||||.-+|+.++
T Consensus 75 k~lSILkQ~N~i~~rlTV~dLv~FG-RfPYSqGRlt~eD~~~I~~aieyl~L~--~l~dryLd~LSGGQrQRAfIAMVla 151 (252)
T COG4604 75 KKLSILKQENHINSRLTVRDLVGFG-RFPYSQGRLTKEDRRIINEAIEYLHLE--DLSDRYLDELSGGQRQRAFIAMVLA 151 (252)
T ss_pred HHHHHHHhhchhhheeEHHHHhhcC-CCcccCCCCchHHHHHHHHHHHHhccc--chHHHhHHhcccchhhhhhhheeee
Confidence 8899999999999999999988774 43 4666677888999999999997 4999999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 447 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 447 ~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
++.+.++||||.++||.+...++++.++++ .+ |+||+++-||++.|..++|+|+-|++|+++..|+++++.+
T Consensus 152 QdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 152 QDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred ccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcC
Confidence 999999999999999999999999999986 34 9999999999999999999999999999999999999854
No 253
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=1.5e-43 Score=348.10 Aligned_cols=196 Identities=28% Similarity=0.396 Sum_probs=172.8
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcc
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 371 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ 371 (614)
++++|++|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.......++.
T Consensus 1 l~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (198)
T TIGR01189 1 LAARNLACSRGE------RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRN 74 (198)
T ss_pred CEEEEEEEEECC------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhh
Confidence 468999999973 57999999999999999999999999999999999999999999999999886544455678
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCE
Q 007178 372 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 451 (614)
Q Consensus 372 ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~v 451 (614)
+||+||++.+++.+|+.||+.++....+ .+ ++++.++++.+++. +..++++.+||||||||++||||++.+|++
T Consensus 75 i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~-~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~~p~l 148 (198)
T TIGR01189 75 ILYLGHLPGLKPELSALENLHFWAAIHG---GA-QRTIEDALAAVGLT--GFEDLPAAQLSAGQQRRLALARLWLSRAPL 148 (198)
T ss_pred eEEeccCcccccCCcHHHHHHHHHHHcC---Cc-HHHHHHHHHHcCCH--HHhcCChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999998999999988755443 11 34678899999996 378999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEE
Q 007178 452 VYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGI 501 (614)
Q Consensus 452 llLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~i 501 (614)
++|||||+|||+.+++.+++.|++. ++|+|||++||+.+++ .|+|++.
T Consensus 149 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~--~~~~~~~ 197 (198)
T TIGR01189 149 WILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL--VEARELR 197 (198)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc--cceEEee
Confidence 9999999999999999999999985 5689999999998654 4787653
No 254
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.3e-43 Score=394.66 Aligned_cols=211 Identities=20% Similarity=0.262 Sum_probs=186.2
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhh
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 369 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~ 369 (614)
+|+++|++|+|++ +.+++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. .....+
T Consensus 3 ~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~ 76 (490)
T PRK10938 3 SLQISQGTFRLSD------TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQ 76 (490)
T ss_pred eEEEEeEEEEcCC------eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHH
Confidence 6999999999973 459999999999999999999999999999999999999999999999987643 233445
Q ss_pred cceEEEcCCCCC--C-C-----CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHH
Q 007178 370 TSMGVCPQEDLL--W-E-----TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSV 441 (614)
Q Consensus 370 ~~ig~~~Q~~~l--~-~-----~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~i 441 (614)
+.+||+||++.+ + + .+|++|++.+. .+.+++++++++.+||. +..++++++||||||||++|
T Consensus 77 ~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~l 146 (490)
T PRK10938 77 KLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE--------VKDPARCEQLAQQFGIT--ALLDRRFKYLSTGETRKTLL 146 (490)
T ss_pred HHhceeccCcchhhcccchhhccccHHHhcccc--------hhHHHHHHHHHHHcCCH--hhhhCCcccCCHHHHHHHHH
Confidence 679999998643 1 1 47888887532 12356788999999996 37899999999999999999
Q ss_pred HHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHH
Q 007178 442 AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 517 (614)
Q Consensus 442 a~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 517 (614)
|+||+.+|+++||||||+|||+.+++.++++|+++ ++|+|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 147 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 147 CQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEIL 223 (490)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999986 45899999999999999999999999999999999988764
No 255
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.6e-43 Score=402.28 Aligned_cols=216 Identities=23% Similarity=0.406 Sum_probs=186.2
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhh
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 369 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~ 369 (614)
.++++|+++.|.+ ++.+|+|+||++++||.+||+||||||||||+++|+|++ |++|+|.++|+|+.. +.+.+|
T Consensus 349 ~i~~~~vsf~~~~-----~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr 422 (588)
T PRK11174 349 TIEAEDLEILSPD-----GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWR 422 (588)
T ss_pred eEEEEeeEEeccC-----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHH
Confidence 5999999976653 356999999999999999999999999999999999999 999999999999975 567788
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHH
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 440 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~ 440 (614)
++||||||++.+|++ |++||+.++. ...+ +++++++++..++.+ +........+||||||||++
T Consensus 423 ~~i~~v~Q~~~LF~~-TI~eNI~~g~--~~~~----~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRia 495 (588)
T PRK11174 423 KHLSWVGQNPQLPHG-TLRDNVLLGN--PDAS----DEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLA 495 (588)
T ss_pred hheEEecCCCcCCCc-CHHHHhhcCC--CCCC----HHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHH
Confidence 999999999999987 9999998852 1122 344555555555431 12234456679999999999
Q ss_pred HHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHhc
Q 007178 441 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 520 (614)
Q Consensus 441 ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 520 (614)
||||++.+|+++|||||||+||+.+.+++.+.|++..+++|+|++||+++.+. .||+|++|++|++++.|+.+++.++.
T Consensus 496 lARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~-~aD~Iivl~~G~i~e~G~~~eL~~~~ 574 (588)
T PRK11174 496 LARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLA-QWDQIWVMQDGQIVQQGDYAELSQAG 574 (588)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHH-hCCEEEEEeCCeEeecCCHHHHHhcc
Confidence 99999999999999999999999999999999998888999999999998876 49999999999999999999997653
No 256
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-43 Score=342.00 Aligned_cols=173 Identities=32% Similarity=0.573 Sum_probs=159.3
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc---HHHh
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD---MDRI 368 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~---~~~~ 368 (614)
++++|+++.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ....
T Consensus 1 i~~~~l~~~~~~------~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (178)
T cd03229 1 LELKNVSKRYGQ------KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPL 74 (178)
T ss_pred CEEEEEEEEECC------eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHH
Confidence 468999999973 5699999999999999999999999999999999999999999999999987542 3456
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCC
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 448 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~ 448 (614)
++.++|+||++.+++.+|++||+.+. ||||||||++||+||+.+
T Consensus 75 ~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------lS~G~~qr~~la~al~~~ 118 (178)
T cd03229 75 RRRIGMVFQDFALFPHLTVLENIALG------------------------------------LSGGQQQRVALARALAMD 118 (178)
T ss_pred hhcEEEEecCCccCCCCCHHHheeec------------------------------------CCHHHHHHHHHHHHHHCC
Confidence 78899999999999999999998653 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHhhCCEEEEEeCCE
Q 007178 449 PKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGS 506 (614)
Q Consensus 449 p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~-g~tIil~TH~~~e~~~l~dri~il~~G~ 506 (614)
|+++||||||+|||+.+++.++++|++. ++ |+|||++||++++++.+||++++|++|+
T Consensus 119 p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 119 PDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999999986 44 7999999999999999999999999985
No 257
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=2.4e-43 Score=342.13 Aligned_cols=174 Identities=24% Similarity=0.475 Sum_probs=159.4
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc--HHH
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDR 367 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~--~~~ 367 (614)
++++++|++|+| +++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ...
T Consensus 3 ~~l~~~~l~~~~----------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 72 (182)
T cd03215 3 PVLEVRGLSVKG----------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDA 72 (182)
T ss_pred cEEEEeccEEEe----------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHH
Confidence 369999999987 89999999999999999999999999999999999999999999999988643 234
Q ss_pred hhcceEEEcCCC---CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 007178 368 IYTSMGVCPQED---LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 444 (614)
Q Consensus 368 ~~~~ig~~~Q~~---~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~a 444 (614)
.++.++|+||++ .+++.+|++||+.+... ||||||||++||||
T Consensus 73 ~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~----------------------------------LS~G~~qrl~la~a 118 (182)
T cd03215 73 IRAGIAYVPEDRKREGLVLDLSVAENIALSSL----------------------------------LSGGNQQKVVLARW 118 (182)
T ss_pred HhCCeEEecCCcccCcccCCCcHHHHHHHHhh----------------------------------cCHHHHHHHHHHHH
Confidence 567899999984 57888999999976421 99999999999999
Q ss_pred HhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCEE
Q 007178 445 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSL 507 (614)
Q Consensus 445 l~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~l 507 (614)
++.+|+++||||||+|||+.+++.+++.+++. ++|+|||++||+++++..+||++++|++|++
T Consensus 119 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 119 LARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred HccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999999986 4589999999999999999999999999974
No 258
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-43 Score=380.95 Aligned_cols=215 Identities=25% Similarity=0.375 Sum_probs=188.6
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHh
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 368 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~ 368 (614)
.++++++|+++.|++. ..+.+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 19 ~~mL~lknL~~~~~~~---~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------- 88 (549)
T PRK13545 19 KPFDKLKDLFFRSKDG---EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------- 88 (549)
T ss_pred cceeEEEEEEEecCCC---ccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee-------
Confidence 3478999999999752 135699999999999999999999999999999999999999999999999752
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCC
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 448 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~ 448 (614)
++.+...+.+.+|++||+.+.....+.+.++..++++++++.+++. +..++++.+||||||||++|||||+.+
T Consensus 89 -----~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~--~~ld~~~~~LSGGQrQRVaLArAL~~~ 161 (549)
T PRK13545 89 -----LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIG--KFIYQPVKTYSSGMKSRLGFAISVHIN 161 (549)
T ss_pred -----eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCCh--hHhhCCcccCCHHHHHHHHHHHHHHhC
Confidence 1223445677799999998866555555555667788999999996 478999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHhc
Q 007178 449 PKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 520 (614)
Q Consensus 449 p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 520 (614)
|+++||||||+|||+.+++.+++.|++++ +|+|||++||+++++..+|||+++|++|++++.|+++++..++
T Consensus 162 P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~ 234 (549)
T PRK13545 162 PDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHY 234 (549)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhH
Confidence 99999999999999999999999999864 6899999999999999999999999999999999999887654
No 259
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-43 Score=390.12 Aligned_cols=223 Identities=25% Similarity=0.456 Sum_probs=193.0
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 368 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~ 368 (614)
..|+++||++.|+.++ ++.+++|+||+|++||++||+||||+||||+.++|-.++.|++|+|.+||+|+++ +...+
T Consensus 464 G~IeF~~VsFaYP~Rp---~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~l 540 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTRP---DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYL 540 (716)
T ss_pred ceEEEEEeeeecCCCC---CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHH
Confidence 4699999999999753 6789999999999999999999999999999999999999999999999999976 66778
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHH-----HHHHHHcCCCC--CCcccccCCCCChhHHHHHHH
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAV-----EESLKSVNLFH--GGVADKQAGKYSGGMKRRLSV 441 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~~L~~--~~~~~~~~~~LSgG~kqrl~i 441 (614)
|++||+|-|+|.||.. |++|||.++.. ..+.+++...+ .+.+.. +++ +..-..+..+||||||||++|
T Consensus 541 r~~Ig~V~QEPvLFs~-sI~eNI~YG~~--~~t~e~i~~AAk~ANah~FI~~--~p~gY~T~VGEkG~qLSGGQKQRIAI 615 (716)
T KOG0058|consen 541 RRKIGLVGQEPVLFSG-SIRENIAYGLD--NATDEEIEAAAKMANAHEFITN--FPDGYNTVVGEKGSQLSGGQKQRIAI 615 (716)
T ss_pred HHHeeeeeccceeecc-cHHHHHhcCCC--CCCHHHHHHHHHHhChHHHHHh--CccccccccCCccccccchHHHHHHH
Confidence 9999999999999997 99999998654 33333332222 222222 221 123455667899999999999
Q ss_pred HHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHhcC
Q 007178 442 AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG 521 (614)
Q Consensus 442 a~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~ 521 (614)
||||+.||+||||||.||+||.++...+.+.|.+..+|+|||++.|.++.++. ||+|+++++|++++.|+.+||.++.+
T Consensus 616 ARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~-Ad~Ivvi~~G~V~E~G~h~eLl~~~~ 694 (716)
T KOG0058|consen 616 ARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRH-ADQIVVIDKGRVVEMGTHDELLSKPN 694 (716)
T ss_pred HHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhh-ccEEEEEcCCeEEecccHHHHhhCcc
Confidence 99999999999999999999999999999999998888999999999999986 99999999999999999999988753
No 260
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=2.3e-43 Score=402.59 Aligned_cols=217 Identities=24% Similarity=0.421 Sum_probs=190.5
Q ss_pred EEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC--ccEEEEcCeeCCCcHHHhhcc
Q 007178 294 SDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT--SGTAYVQGLDIRTDMDRIYTS 371 (614)
Q Consensus 294 ~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~--sG~i~i~G~~i~~~~~~~~~~ 371 (614)
.+|++|.|+ ++.+|+|+|+++++||++||+||||||||||+|+|+|..+|+ +|+|.++|+++.. ..+++
T Consensus 71 ~~~l~~~~~------~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~---~~~~~ 141 (659)
T PLN03211 71 ISDETRQIQ------ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK---QILKR 141 (659)
T ss_pred cccccccCC------CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch---hhccc
Confidence 456667775 367999999999999999999999999999999999999985 9999999998742 34567
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcC---CCchhHHHHHHHHHHHcCCCCCCcc-----cccCCCCChhHHHHHHHHH
Q 007178 372 MGVCPQEDLLWETLTGREHLLFYGRLKN---LKGPALTQAVEESLKSVNLFHGGVA-----DKQAGKYSGGMKRRLSVAI 443 (614)
Q Consensus 372 ig~~~Q~~~l~~~lTv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~L~~~~~~-----~~~~~~LSgG~kqrl~ia~ 443 (614)
+||++|++.+++.+||+||+.+.+.++. .+.++.+++++++++.+||.+ .+ ++.+++||||||||++||+
T Consensus 142 i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~t~vg~~~~~~LSgGerqRv~ia~ 219 (659)
T PLN03211 142 TGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTK--CENTIIGNSFIRGISGGERKRVSIAH 219 (659)
T ss_pred eEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh--hcCceeCCCCCCCcChhhhhHHHHHH
Confidence 9999999999999999999999776542 233445677899999999963 44 4567789999999999999
Q ss_pred HHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHH-HHHhhCCEEEEEeCCEEEEEcCHHHHHHhcC
Q 007178 444 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSME-EAEALCDRLGIFVDGSLQCIGNPKELKARYG 521 (614)
Q Consensus 444 al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~-e~~~l~dri~il~~G~l~~~g~~~~l~~~~~ 521 (614)
||+.+|++++|||||+|||+.+++++.+.|++++ +|+|||++||+++ ++.++||++++|++|++++.|+++++...+.
T Consensus 220 aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~ 299 (659)
T PLN03211 220 EMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFE 299 (659)
T ss_pred HHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHH
Confidence 9999999999999999999999999999999864 6999999999998 6889999999999999999999999987653
No 261
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-43 Score=381.84 Aligned_cols=217 Identities=26% Similarity=0.466 Sum_probs=190.6
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhhc
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 370 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~~ 370 (614)
++.+|+++.|++. +++++|+||++++|+.++|+|+||||||||+++|+|+.+|++|+|.+||.+.++ +...+|+
T Consensus 321 i~~~~l~~~y~~g-----~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k 395 (559)
T COG4988 321 ISLENLSFRYPDG-----KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRK 395 (559)
T ss_pred eeecceEEecCCC-----CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHh
Confidence 5556999999852 489999999999999999999999999999999999999999999999999876 5678899
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC--------CcccccCCCCChhHHHHHHHH
Q 007178 371 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG--------GVADKQAGKYSGGMKRRLSVA 442 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~--------~~~~~~~~~LSgG~kqrl~ia 442 (614)
++++++|+|.+|+. |++||+.++. .+..++.+.++++..++.+. .........|||||+|||++|
T Consensus 396 ~i~~v~Q~p~lf~g-TireNi~l~~------~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLA 468 (559)
T COG4988 396 QISWVSQNPYLFAG-TIRENILLAR------PDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALA 468 (559)
T ss_pred HeeeeCCCCccccc-cHHHHhhccC------CcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHH
Confidence 99999999999998 9999999863 22335667778888777530 112233445999999999999
Q ss_pred HHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHhcC
Q 007178 443 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG 521 (614)
Q Consensus 443 ~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~ 521 (614)
|||+.+++++|+||||++||.++.+.+.+.|.++.+++|++++||+++.+.. ||+|++|++|++++.|+++++.++-+
T Consensus 469 RAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~-~D~I~vld~G~l~~~g~~~~L~~~~~ 546 (559)
T COG4988 469 RALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAAD-ADRIVVLDNGRLVEQGTHEELSEKQG 546 (559)
T ss_pred HHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhc-CCEEEEecCCceeccCCHHHHhhcCc
Confidence 9999999999999999999999999999999999888999999999999876 99999999999999999999977543
No 262
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=4.3e-43 Score=397.19 Aligned_cols=218 Identities=26% Similarity=0.466 Sum_probs=193.2
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 368 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~ 368 (614)
..++++|++++|++. ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+ +.+.+
T Consensus 337 ~~i~~~~v~f~y~~~----~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~ 412 (574)
T PRK11160 337 VSLTLNNVSFTYPDQ----PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAAL 412 (574)
T ss_pred CeEEEEEEEEECCCC----CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHH
Confidence 359999999999742 2469999999999999999999999999999999999999999999999999875 56678
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCccc----------ccCCCCChhHHHH
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVAD----------KQAGKYSGGMKRR 438 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~----------~~~~~LSgG~kqr 438 (614)
|+++||+||++.+|+. |++||+.++.. +..++++.++++.+++.+ ..+ ....+||||||||
T Consensus 413 r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~------~~~~~~i~~al~~~~l~~--~i~~p~GldT~vge~g~~LSgGqrqR 483 (574)
T PRK11160 413 RQAISVVSQRVHLFSA-TLRDNLLLAAP------NASDEALIEVLQQVGLEK--LLEDDKGLNAWLGEGGRQLSGGEQRR 483 (574)
T ss_pred HhheeEEcccchhhcc-cHHHHhhcCCC------ccCHHHHHHHHHHcCCHH--HHcCccccCchhcCCCCCCCHHHHHH
Confidence 8999999999999986 99999987531 223456788889988863 333 2566799999999
Q ss_pred HHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 439 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 439 l~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
++||||++.+|+++||||||++||+.+++.+.+.+++..+++|+|++||+++.+.. ||||++|++|++++.|+.+++.+
T Consensus 484 ialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 484 LGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQ-FDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHh-CCEEEEEeCCeEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999988789999999999999875 99999999999999999999977
Q ss_pred hcC
Q 007178 519 RYG 521 (614)
Q Consensus 519 ~~~ 521 (614)
+.+
T Consensus 563 ~~g 565 (574)
T PRK11160 563 QQG 565 (574)
T ss_pred cCc
Confidence 643
No 263
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.2e-43 Score=341.65 Aligned_cols=185 Identities=27% Similarity=0.442 Sum_probs=164.5
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCC--CCCccEEEEcCeeCCCcHHHh
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT--RTTSGTAYVQGLDIRTDMDRI 368 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~--~p~sG~i~i~G~~i~~~~~~~ 368 (614)
.++++|+++.|++.. .++.+++|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++|+++. ...
T Consensus 3 ~l~~~~l~~~~~~~~--~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~---~~~ 77 (192)
T cd03232 3 VLTWKNLNYTVPVKG--GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD---KNF 77 (192)
T ss_pred EEEEeeeEEEecCCC--CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH---HHh
Confidence 588999999997421 1256999999999999999999999999999999999986 489999999999875 345
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCC
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 448 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~ 448 (614)
++.++|++|++.+++.+|++||+.+.... + +||||||||+++|||++.+
T Consensus 78 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~----------------~---------------~LSgGe~qrv~la~al~~~ 126 (192)
T cd03232 78 QRSTGYVEQQDVHSPNLTVREALRFSALL----------------R---------------GLSVEQRKRLTIGVELAAK 126 (192)
T ss_pred hhceEEecccCccccCCcHHHHHHHHHHH----------------h---------------cCCHHHhHHHHHHHHHhcC
Confidence 67899999999999999999999864210 0 7999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHH-HHHhhCCEEEEEeC-CEEEEEc
Q 007178 449 PKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSME-EAEALCDRLGIFVD-GSLQCIG 511 (614)
Q Consensus 449 p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~-e~~~l~dri~il~~-G~l~~~g 511 (614)
|+++||||||+|||+.+++.+++.+++.+ +|+|||++||+++ ++..+|||+++|++ |+++..|
T Consensus 127 p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 127 PSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred CcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999864 5899999999998 57889999999999 9998765
No 264
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.8e-43 Score=345.00 Aligned_cols=196 Identities=23% Similarity=0.308 Sum_probs=173.8
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhc
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 370 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~ 370 (614)
+++++|++|+|++ +.+++|+||++++||++||+||||||||||+++|+|+.+|++|+|+++|+++.......++
T Consensus 1 ml~~~~l~~~~~~------~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~ 74 (200)
T PRK13540 1 MLDVIELDFDYHD------QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQK 74 (200)
T ss_pred CEEEEEEEEEeCC------eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHh
Confidence 3789999999973 5699999999999999999999999999999999999999999999999988654455678
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCC
Q 007178 371 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 450 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~ 450 (614)
++||+||++.+++.+|++||+.+..... . .+..++++++.+++.+ ..++++.+||||||||++||||++.+|+
T Consensus 75 ~i~~~~q~~~~~~~~tv~~~~~~~~~~~---~--~~~~~~~~l~~~~l~~--~~~~~~~~LS~G~~~rv~laral~~~p~ 147 (200)
T PRK13540 75 QLCFVGHRSGINPYLTLRENCLYDIHFS---P--GAVGITELCRLFSLEH--LIDYPCGLLSSGQKRQVALLRLWMSKAK 147 (200)
T ss_pred heEEeccccccCcCCCHHHHHHHHHhcC---c--chHHHHHHHHHcCCch--hhhCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 8999999999999999999998764321 1 1346889999999963 6788999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEE
Q 007178 451 VVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLG 500 (614)
Q Consensus 451 vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~ 500 (614)
++||||||+|||+.+++.+++.|++. ++|+|||++||+.+.+.. ||.-.
T Consensus 148 ~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~-~d~~~ 197 (200)
T PRK13540 148 LWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNK-ADYEE 197 (200)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccc-cchhh
Confidence 99999999999999999999999986 468999999999988865 88643
No 265
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=5.6e-43 Score=404.43 Aligned_cols=214 Identities=25% Similarity=0.411 Sum_probs=188.0
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhh
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 369 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~ 369 (614)
.++++|++++|++. ++.+|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|.+||+|+.. +.+.+|
T Consensus 451 ~I~~~nvsf~Y~~~----~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr 526 (686)
T TIGR03797 451 AIEVDRVTFRYRPD----GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVR 526 (686)
T ss_pred eEEEEEEEEEcCCC----CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHH
Confidence 59999999999642 3579999999999999999999999999999999999999999999999999976 667889
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHH
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 440 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~ 440 (614)
++||||||++.+|++ |++||+.++.. . .++++.++++..++.+ +........+||||||||++
T Consensus 527 ~~i~~v~Q~~~lf~g-TI~eNi~~~~~---~----~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRia 598 (686)
T TIGR03797 527 RQLGVVLQNGRLMSG-SIFENIAGGAP---L----TLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLL 598 (686)
T ss_pred hccEEEccCCccCcc-cHHHHHhcCCC---C----CHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHH
Confidence 999999999999987 99999987522 1 2345677777777642 01122345679999999999
Q ss_pred HHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 441 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 441 ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
||||++.+|+++|||||||+||+.+.+++.+.|++. ++|+|++||+++.+.. ||||++|++|++++.|+.+++.++
T Consensus 599 lARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~-~D~Iivl~~G~iv~~G~~~~Ll~~ 674 (686)
T TIGR03797 599 IARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRN-ADRIYVLDAGRVVQQGTYDELMAR 674 (686)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999999876 5899999999998865 999999999999999999999775
No 266
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=5.6e-43 Score=336.76 Aligned_cols=171 Identities=32% Similarity=0.591 Sum_probs=156.1
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhhc
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 370 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~~ 370 (614)
++++|++++|++. ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .....++
T Consensus 1 i~~~~l~~~~~~~----~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (173)
T cd03246 1 LEVENVSFRYPGA----EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGD 76 (173)
T ss_pred CEEEEEEEEcCCC----CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHh
Confidence 4689999999742 2469999999999999999999999999999999999999999999999998854 3345677
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCC
Q 007178 371 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 450 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~ 450 (614)
.++|++|++.+++. |++||+ ||||||||++|||||+.+|+
T Consensus 77 ~i~~~~q~~~~~~~-tv~~~l---------------------------------------LS~G~~qrv~la~al~~~p~ 116 (173)
T cd03246 77 HVGYLPQDDELFSG-SIAENI---------------------------------------LSGGQRQRLGLARALYGNPR 116 (173)
T ss_pred heEEECCCCccccC-cHHHHC---------------------------------------cCHHHHHHHHHHHHHhcCCC
Confidence 89999999988885 999987 99999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCEE
Q 007178 451 VVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSL 507 (614)
Q Consensus 451 vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~l 507 (614)
++||||||+|||+.+++.+++.|++.+ +|+|||++||++++++ .|||+++|++|++
T Consensus 117 ~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~~d~v~~l~~G~i 173 (173)
T cd03246 117 ILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA-SADRILVLEDGRV 173 (173)
T ss_pred EEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEEECCCC
Confidence 999999999999999999999999864 5899999999999985 7999999999974
No 267
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=3.6e-43 Score=343.00 Aligned_cols=180 Identities=28% Similarity=0.497 Sum_probs=158.3
Q ss_pred cceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC---cHHHhhcceEEEcCCC--CCCCC
Q 007178 310 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---DMDRIYTSMGVCPQED--LLWET 384 (614)
Q Consensus 310 ~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~---~~~~~~~~ig~~~Q~~--~l~~~ 384 (614)
+.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.. .....++.+||+||++ .+++
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~- 83 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA- 83 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcccc-
Confidence 569999999999999999999999999999999999999999999999998742 2234567899999997 3554
Q ss_pred CCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHH
Q 007178 385 LTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA 464 (614)
Q Consensus 385 lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~ 464 (614)
.|++||+.+.....+.+.++.+++++++++.+||. +..++++.+||||||||++|||||+.+|+++||||||+|||+.
T Consensus 84 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 161 (190)
T TIGR01166 84 ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGAS--GLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPA 161 (190)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCch--hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 69999998865444444455567789999999996 4789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-cCCceEEEEcCCHHHH
Q 007178 465 SRNNLWNVVKRA-KQGRAIILTTHSMEEA 492 (614)
Q Consensus 465 ~~~~i~~~l~~~-~~g~tIil~TH~~~e~ 492 (614)
+++.++++|++. ++|+|||++||+++++
T Consensus 162 ~~~~~~~~l~~~~~~~~tili~sH~~~~~ 190 (190)
T TIGR01166 162 GREQMLAILRRLRAEGMTVVISTHDVDLA 190 (190)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeeccccC
Confidence 999999999986 4689999999998763
No 268
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=1.1e-42 Score=342.61 Aligned_cols=186 Identities=25% Similarity=0.408 Sum_probs=164.7
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCC--CCCCccEEEEcCeeCCCcH--HH
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI--TRTTSGTAYVQGLDIRTDM--DR 367 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl--~~p~sG~i~i~G~~i~~~~--~~ 367 (614)
++++|++|+|++ +.+++|+||++++||+++|+||||||||||+++|+|+ .+|++|+|.++|+++.... ..
T Consensus 1 l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~ 74 (200)
T cd03217 1 LEIKDLHVSVGG------KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEER 74 (200)
T ss_pred CeEEEEEEEeCC------EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHH
Confidence 468999999973 4699999999999999999999999999999999999 5799999999999986522 22
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhC
Q 007178 368 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 447 (614)
Q Consensus 368 ~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~ 447 (614)
.++.++|+||++.+++.+|+++++ ++...+||||||||+++|||++.
T Consensus 75 ~~~~i~~v~q~~~~~~~~~~~~~l---------------------------------~~~~~~LS~G~~qrv~laral~~ 121 (200)
T cd03217 75 ARLGIFLAFQYPPEIPGVKNADFL---------------------------------RYVNEGFSGGEKKRNEILQLLLL 121 (200)
T ss_pred hhCcEEEeecChhhccCccHHHHH---------------------------------hhccccCCHHHHHHHHHHHHHhc
Confidence 345699999999999988988876 01235799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHh-hCCEEEEEeCCEEEEEcCHHHHH
Q 007178 448 NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEA-LCDRLGIFVDGSLQCIGNPKELK 517 (614)
Q Consensus 448 ~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~-l~dri~il~~G~l~~~g~~~~l~ 517 (614)
+|+++||||||+|||+.+++.++++|++.+ +|+|||++||++++++. +|||+++|++|++.+.|+.+ +.
T Consensus 122 ~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~~~-~~ 192 (200)
T cd03217 122 EPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKE-LA 192 (200)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEccHH-HH
Confidence 999999999999999999999999999864 58999999999999988 79999999999999999554 44
No 269
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.9e-43 Score=333.85 Aligned_cols=219 Identities=25% Similarity=0.423 Sum_probs=193.0
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhh
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 369 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~ 369 (614)
+|+.+|++.+..+ +..++++||++++||+.+|+||||||||||+|.|+|.+.|++|++.++|.++.. ...+..
T Consensus 1 mi~a~nls~~~~G------r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA 74 (259)
T COG4559 1 MIRAENLSYSLAG------RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELA 74 (259)
T ss_pred CeeeeeeEEEeec------ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHH
Confidence 4789999999874 679999999999999999999999999999999999999999999999999865 344445
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCch--hHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhC
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGP--ALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 447 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~--~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~ 447 (614)
+.-+++||+..+-...||+|-+.++..-.+...+ +..+.+++++...++. .++.+...+|||||||||.+||.|++
T Consensus 75 ~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~--~la~R~y~~LSGGEqQRVqlARvLaQ 152 (259)
T COG4559 75 RHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLS--GLAGRDYRTLSGGEQQRVQLARVLAQ 152 (259)
T ss_pred HHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChh--hhhccchhhcCchHHHHHHHHHHHHH
Confidence 6779999998874456999999987554433233 5556688999999997 48999999999999999999999974
Q ss_pred ------CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHH
Q 007178 448 ------NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 517 (614)
Q Consensus 448 ------~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 517 (614)
++++|+||||||.||...+..++++.+++ ++|..|+.+-||++.+..+||||++|++||+++.|+|++..
T Consensus 153 l~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vl 229 (259)
T COG4559 153 LWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVL 229 (259)
T ss_pred ccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhc
Confidence 45689999999999999999999999996 67999999999999999999999999999999999998864
No 270
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=5.7e-43 Score=405.91 Aligned_cols=217 Identities=23% Similarity=0.392 Sum_probs=187.9
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 368 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~ 368 (614)
..|+++|++++|++. ++.+|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|.++|.|+.. +.+.+
T Consensus 476 ~~I~~~~vsf~y~~~----~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~l 551 (710)
T TIGR03796 476 GYVELRNITFGYSPL----EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVL 551 (710)
T ss_pred CeEEEEEEEEecCCC----CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHH
Confidence 369999999999752 3579999999999999999999999999999999999999999999999999965 56778
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 439 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 439 (614)
|++|||+||++.+|+. |++||+.++.. +..++++.++++..++.+ +........+||||||||+
T Consensus 552 r~~i~~v~Q~~~lf~g-Ti~eNi~l~~~------~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRi 624 (710)
T TIGR03796 552 ANSVAMVDQDIFLFEG-TVRDNLTLWDP------TIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRL 624 (710)
T ss_pred HhheeEEecCChhhhc-cHHHHhhCCCC------CCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHH
Confidence 9999999999999986 99999987421 112345566666666532 0123345667999999999
Q ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 440 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 440 ~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
+||||++.+|+++|||||||+||+.+++++.+.+++ .++|+|++||+++.+.. ||||++|++|++++.|+.+++.++
T Consensus 625 aLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~-~D~Iivl~~G~i~~~G~~~~Ll~~ 701 (710)
T TIGR03796 625 EIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRD-CDEIIVLERGKVVQRGTHEELWAV 701 (710)
T ss_pred HHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHh-CCEEEEEeCCEEEEecCHHHHHHc
Confidence 999999999999999999999999999999999976 58999999999998865 999999999999999999999875
Q ss_pred c
Q 007178 520 Y 520 (614)
Q Consensus 520 ~ 520 (614)
.
T Consensus 702 ~ 702 (710)
T TIGR03796 702 G 702 (710)
T ss_pred C
Confidence 4
No 271
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=4.2e-43 Score=339.78 Aligned_cols=177 Identities=30% Similarity=0.579 Sum_probs=160.7
Q ss_pred EEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhhcc
Q 007178 293 ISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTS 371 (614)
Q Consensus 293 ~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~~~ 371 (614)
+++|++|+|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .....++.
T Consensus 1 ~~~~l~~~~~~------~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~ 74 (180)
T cd03214 1 EVENLSVGYGG------RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARK 74 (180)
T ss_pred CeeEEEEEECC------eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHH
Confidence 36899999973 469999999999999999999999999999999999999999999999998854 33455667
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCE
Q 007178 372 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 451 (614)
Q Consensus 372 ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~v 451 (614)
+||+|| +++.+++. +..++++.+||||||||++||||++.+|++
T Consensus 75 i~~~~q----------------------------------~l~~~gl~--~~~~~~~~~LS~G~~qrl~laral~~~p~l 118 (180)
T cd03214 75 IAYVPQ----------------------------------ALELLGLA--HLADRPFNELSGGERQRVLLARALAQEPPI 118 (180)
T ss_pred HhHHHH----------------------------------HHHHcCCH--hHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999 77788886 367889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEc
Q 007178 452 VYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 511 (614)
Q Consensus 452 llLDEPtsgLD~~~~~~i~~~l~~~~-~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g 511 (614)
+||||||+|||+.+++.+.+.|++.+ + |+|||++||+++++..+|||+++|++|++...|
T Consensus 119 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 119 LLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999864 4 899999999999999999999999999997643
No 272
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=7.4e-43 Score=396.43 Aligned_cols=219 Identities=21% Similarity=0.394 Sum_probs=188.6
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhh
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 369 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~ 369 (614)
.++++|++++|++. ++.+++|+||+|++||.++|+||||||||||+++|+|+++|++|+|+++|.++.. +.+..|
T Consensus 341 ~i~~~~vsf~y~~~----~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~ 416 (582)
T PRK11176 341 DIEFRNVTFTYPGK----EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLR 416 (582)
T ss_pred eEEEEEEEEecCCC----CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHH
Confidence 59999999999742 3569999999999999999999999999999999999999999999999999865 456778
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHH
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 440 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~ 440 (614)
+.+||+||++.+|+. |++||+.++. +.+..+++++++++..++.+ +........+||||||||++
T Consensus 417 ~~i~~v~Q~~~lf~~-Ti~~Ni~~~~-----~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~ 490 (582)
T PRK11176 417 NQVALVSQNVHLFND-TIANNIAYAR-----TEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIA 490 (582)
T ss_pred hhceEEccCceeecc-hHHHHHhcCC-----CCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHH
Confidence 899999999999986 9999998742 11112345666777666431 01223334679999999999
Q ss_pred HHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHhc
Q 007178 441 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 520 (614)
Q Consensus 441 ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 520 (614)
|||||+++|+++|||||||+||+.+.+++.+.|++..+++|+|++||+++.+. .||||++|++|++++.|+.+++.++.
T Consensus 491 LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~-~~D~Ii~l~~g~i~e~g~~~~l~~~~ 569 (582)
T PRK11176 491 IARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-KADEILVVEDGEIVERGTHAELLAQN 569 (582)
T ss_pred HHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEEEeCCHHHHHhCC
Confidence 99999999999999999999999999999999998878899999999998876 59999999999999999999998764
No 273
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=1e-42 Score=402.74 Aligned_cols=220 Identities=24% Similarity=0.443 Sum_probs=190.6
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 368 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~ 368 (614)
..|+++|++++|++. ++.+|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|.++|.|+.. +...+
T Consensus 462 ~~I~~~~vsf~Y~~~----~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~l 537 (694)
T TIGR03375 462 GEIEFRNVSFAYPGQ----ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADL 537 (694)
T ss_pred ceEEEEEEEEEeCCC----CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHH
Confidence 359999999999742 3569999999999999999999999999999999999999999999999999975 56778
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 439 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 439 (614)
|+++|||||++.+|+. |++||+.+... +..++++.++++..++.+ +........+||||||||+
T Consensus 538 r~~i~~v~Q~~~lf~~-TI~eNi~~~~~------~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRl 610 (694)
T TIGR03375 538 RRNIGYVPQDPRLFYG-TLRDNIALGAP------YADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAV 610 (694)
T ss_pred HhccEEECCChhhhhh-hHHHHHhCCCC------CCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHH
Confidence 9999999999999986 99999987521 112345566666666531 0123345568999999999
Q ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 440 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 440 ~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
+||||++.+|+++|||||||+||+.+++++.+.|++..+++|+|++||+++.+. .||||++|++|++++.|+++++.++
T Consensus 611 alARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~-~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 611 ALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLD-LVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 999999999999999999999999999999999998878999999999999875 6999999999999999999999776
Q ss_pred cC
Q 007178 520 YG 521 (614)
Q Consensus 520 ~~ 521 (614)
..
T Consensus 690 ~~ 691 (694)
T TIGR03375 690 LR 691 (694)
T ss_pred hh
Confidence 43
No 274
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.2e-43 Score=334.67 Aligned_cols=170 Identities=29% Similarity=0.619 Sum_probs=155.5
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhhc
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 370 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~~ 370 (614)
++++|++|+|++. ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .....++
T Consensus 1 l~~~~l~~~~~~~----~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (171)
T cd03228 1 IEFKNVSFSYPGR----PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRK 76 (171)
T ss_pred CEEEEEEEEcCCC----CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHh
Confidence 4689999999742 1369999999999999999999999999999999999999999999999998753 3345567
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCC
Q 007178 371 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 450 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~ 450 (614)
.+||+||++.+++ .|+.||+ ||||||||++||+|++.+|+
T Consensus 77 ~i~~~~~~~~~~~-~t~~e~l---------------------------------------LS~G~~~rl~la~al~~~p~ 116 (171)
T cd03228 77 NIAYVPQDPFLFS-GTIRENI---------------------------------------LSGGQRQRIAIARALLRDPP 116 (171)
T ss_pred hEEEEcCCchhcc-chHHHHh---------------------------------------hCHHHHHHHHHHHHHhcCCC
Confidence 8999999998887 5999987 99999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCE
Q 007178 451 VVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGS 506 (614)
Q Consensus 451 vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~ 506 (614)
++||||||+|||+.++++++++|++.++++|||++||++++++. ||++++|++|+
T Consensus 117 llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 117 ILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD-ADRIIVLDDGR 171 (171)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh-CCEEEEEcCCC
Confidence 99999999999999999999999987668999999999999987 99999999985
No 275
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.1e-42 Score=388.06 Aligned_cols=215 Identities=25% Similarity=0.415 Sum_probs=187.0
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc--HHH
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDR 367 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~--~~~ 367 (614)
+.++++|+++ .+++|+||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|+++... ...
T Consensus 256 ~~l~~~~l~~-----------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~ 324 (501)
T PRK10762 256 VRLKVDNLSG-----------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDG 324 (501)
T ss_pred cEEEEeCccc-----------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHH
Confidence 4688999983 279999999999999999999999999999999999999999999999988542 234
Q ss_pred hhcceEEEcCCC---CCCCCCCHHHHHHHHhh--hc---C-CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHH
Q 007178 368 IYTSMGVCPQED---LLWETLTGREHLLFYGR--LK---N-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 438 (614)
Q Consensus 368 ~~~~ig~~~Q~~---~l~~~lTv~e~l~~~~~--~~---~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqr 438 (614)
.++++||+||++ .+++.+|++||+.+... .. + ...++.+++++++++.+++.. +..++++.+||||||||
T Consensus 325 ~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGekqr 403 (501)
T PRK10762 325 LANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKT-PSMEQAIGLLSGGNQQK 403 (501)
T ss_pred HHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCC-CCccCchhhCCHHHHHH
Confidence 567899999996 58889999999987421 11 1 122344567889999999952 36899999999999999
Q ss_pred HHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHH
Q 007178 439 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 516 (614)
Q Consensus 439 l~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l 516 (614)
++||+||+.+|+++||||||+|||+.+++.++++|+++ ++|+|||++|||++++..+|||+++|++|+++..|+++++
T Consensus 404 v~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 404 VAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred HHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccC
Confidence 99999999999999999999999999999999999986 4699999999999999999999999999999998887654
No 276
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4e-43 Score=405.01 Aligned_cols=222 Identities=29% Similarity=0.526 Sum_probs=193.0
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHH
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDR 367 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~ 367 (614)
...|+++|++++|+.++ +..+|+|+||+|++||.++|+|||||||||++++|.+++.|++|+|.++|.|+++ +.+.
T Consensus 348 ~g~ief~nV~FsYPsRp---dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~ 424 (1228)
T KOG0055|consen 348 KGEIEFRNVCFSYPSRP---DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKW 424 (1228)
T ss_pred ccceEEEEEEecCCCCC---cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHH
Confidence 34699999999999753 5789999999999999999999999999999999999999999999999999976 6677
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHH
Q 007178 368 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRR 438 (614)
Q Consensus 368 ~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqr 438 (614)
+|++||.|.|+|.||.. |++||+.++- .+..+++++++.+..+..+ +.....+..+||||||||
T Consensus 425 lr~~iglV~QePvlF~~-tI~eNI~~G~------~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQR 497 (1228)
T KOG0055|consen 425 LRSQIGLVSQEPVLFAT-TIRENIRYGK------PDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQR 497 (1228)
T ss_pred HHhhcCeeeechhhhcc-cHHHHHhcCC------CcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHH
Confidence 89999999999999875 9999998752 1223344555554443210 122344455699999999
Q ss_pred HHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 439 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 439 l~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
++|||||+.+|+|||||||||+||+++++.+.+.|.+.++|+|-|+++|++.++.. +|+|++|++|++++.|+++||.+
T Consensus 498 IAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrn-aD~I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 498 IAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRN-ADKIAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred HHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhc-cCEEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999988 99999999999999999999988
Q ss_pred hcC
Q 007178 519 RYG 521 (614)
Q Consensus 519 ~~~ 521 (614)
..|
T Consensus 577 ~~G 579 (1228)
T KOG0055|consen 577 LGG 579 (1228)
T ss_pred ccc
Confidence 763
No 277
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.3e-42 Score=395.02 Aligned_cols=217 Identities=18% Similarity=0.326 Sum_probs=190.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 368 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~ 368 (614)
..++++|+++.|++ ++.+++|+||++++||.+||+|+||||||||+|+|+|+++|++|+|.++|.|+.. +.+..
T Consensus 339 ~~i~~~~v~f~y~~-----~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l 413 (592)
T PRK10790 339 GRIDIDNVSFAYRD-----DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVL 413 (592)
T ss_pred CeEEEEEEEEEeCC-----CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHH
Confidence 35999999999973 2469999999999999999999999999999999999999999999999999965 56778
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 439 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 439 (614)
|++|||+||++.+|++ |++||+.++. ..+ +++++++++.+|+.+ +........+||||||||+
T Consensus 414 ~~~i~~v~Q~~~lF~~-Ti~~NI~~~~---~~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRi 485 (592)
T PRK10790 414 RQGVAMVQQDPVVLAD-TFLANVTLGR---DIS----EEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLL 485 (592)
T ss_pred HhheEEEccCCccccc-hHHHHHHhCC---CCC----HHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 8999999999999998 9999999863 112 345677777777541 0122334567999999999
Q ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 440 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 440 ~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
+|||||+.+|+++|||||||+||+.+.+++.+.|++..+++|+|++||+++.+. .||+|++|++|++++.|+++++.++
T Consensus 486 alARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~-~~D~ii~l~~G~i~~~G~~~~L~~~ 564 (592)
T PRK10790 486 ALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIV-EADTILVLHRGQAVEQGTHQQLLAA 564 (592)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999999999998877899999999998876 5999999999999999999999765
Q ss_pred c
Q 007178 520 Y 520 (614)
Q Consensus 520 ~ 520 (614)
.
T Consensus 565 ~ 565 (592)
T PRK10790 565 Q 565 (592)
T ss_pred C
Confidence 3
No 278
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=1.1e-42 Score=402.61 Aligned_cols=219 Identities=24% Similarity=0.455 Sum_probs=186.8
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 368 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~ 368 (614)
..|+++|++++|++++ ++.+|+|+||++++||.++|+||||||||||+|+|+|+++|++|+|.+||+|+.+ +.+..
T Consensus 477 ~~I~~~nVsf~Y~~~~---~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l 553 (711)
T TIGR00958 477 GLIEFQDVSFSYPNRP---DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYL 553 (711)
T ss_pred CeEEEEEEEEECCCCC---CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHH
Confidence 3599999999997531 3579999999999999999999999999999999999999999999999999865 55678
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 439 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 439 (614)
|++|||+||++.+|+. |++|||.++.. .. .++++.++++..++.+ +...+....+||||||||+
T Consensus 554 r~~i~~v~Q~~~lF~g-TIreNI~~g~~--~~----~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRl 626 (711)
T TIGR00958 554 HRQVALVGQEPVLFSG-SVRENIAYGLT--DT----PDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRI 626 (711)
T ss_pred HhhceEEecCcccccc-CHHHHHhcCCC--CC----CHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHH
Confidence 8999999999999986 99999987521 11 1345666777776542 0122344568999999999
Q ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 440 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 440 ~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
+||||++++|+++|||||||+||+++.+.+.+ ....+++|+|++||+++.+. .||+|++|++|++++.|+++++.++
T Consensus 627 alARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~-~aD~IivL~~G~ive~Gt~~eL~~~ 703 (711)
T TIGR00958 627 AIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVE-RADQILVLKKGSVVEMGTHKQLMED 703 (711)
T ss_pred HHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHH-hCCEEEEEECCEEEEeeCHHHHHhC
Confidence 99999999999999999999999999999988 33346899999999999876 4999999999999999999999876
Q ss_pred cC
Q 007178 520 YG 521 (614)
Q Consensus 520 ~~ 521 (614)
.+
T Consensus 704 ~~ 705 (711)
T TIGR00958 704 QG 705 (711)
T ss_pred CC
Confidence 44
No 279
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=1.3e-42 Score=366.34 Aligned_cols=189 Identities=29% Similarity=0.506 Sum_probs=171.4
Q ss_pred EECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHH
Q 007178 328 MLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ 407 (614)
Q Consensus 328 LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~ 407 (614)
|+||||||||||+|+|+|+++|++|+|.++|+++..... .++++||+||++.+|+.+||+||+.+..+.++.+.++.++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~-~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~ 79 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP-HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKP 79 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH-HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHH
Confidence 689999999999999999999999999999999854322 3578999999999999999999999876655555555667
Q ss_pred HHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEE
Q 007178 408 AVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILT 485 (614)
Q Consensus 408 ~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~-g~tIil~ 485 (614)
+++++++.++|. ++.++++.+||||||||++|||||+.+|+++||||||+|||+.+++.+++.|+++ ++ |+|||++
T Consensus 80 ~~~~~l~~~~l~--~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiiv 157 (325)
T TIGR01187 80 RVLEALRLVQLE--EFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFV 157 (325)
T ss_pred HHHHHHHHcCCc--chhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 889999999996 4789999999999999999999999999999999999999999999999999986 33 8999999
Q ss_pred cCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 486 THSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 486 TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
||+++++..+|||+++|++|+++..|+++++.++
T Consensus 158 THd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~ 191 (325)
T TIGR01187 158 THDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE 191 (325)
T ss_pred eCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999998654
No 280
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-43 Score=375.30 Aligned_cols=219 Identities=26% Similarity=0.460 Sum_probs=194.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhh
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 369 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~ 369 (614)
.++++|++++|++. +.++|+|+||++++||-++|+|++||||||+++.|+|.++|++|+|.++|.++.. +.+.+|
T Consensus 336 ~l~~~~vsF~y~~~----~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~ 411 (573)
T COG4987 336 ALELRNVSFTYPGQ----QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALR 411 (573)
T ss_pred eeeeccceeecCCC----ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHH
Confidence 69999999999864 4579999999999999999999999999999999999999999999999999876 344578
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHH
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 440 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~ 440 (614)
+.|++++|...+|.+ |+++||.+.. ++...+++.++++++||++ +...+.....||||||||++
T Consensus 412 e~i~vl~Qr~hlF~~-Tlr~NL~lA~------~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLA 484 (573)
T COG4987 412 ETISVLTQRVHLFSG-TLRDNLRLAN------PDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLA 484 (573)
T ss_pred HHHhhhccchHHHHH-HHHHHHhhcC------CCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHH
Confidence 899999999999997 9999998752 2234567788888888853 01334556789999999999
Q ss_pred HHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHhc
Q 007178 441 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 520 (614)
Q Consensus 441 ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 520 (614)
|||+|++|.+++||||||.||||...+++++.+.+..+|+|+|++||++..++. ||||++|++|+++++|+++++..+.
T Consensus 485 lAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~-~drIivl~~Gkiie~G~~~~Ll~~~ 563 (573)
T COG4987 485 LARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLER-MDRIIVLDNGKIIEEGTHAELLANN 563 (573)
T ss_pred HHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhh-cCEEEEEECCeeeecCCHHhhhccc
Confidence 999999999999999999999999999999999988889999999999999985 9999999999999999999998754
Q ss_pred C
Q 007178 521 G 521 (614)
Q Consensus 521 ~ 521 (614)
|
T Consensus 564 g 564 (573)
T COG4987 564 G 564 (573)
T ss_pred c
Confidence 3
No 281
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-42 Score=387.02 Aligned_cols=215 Identities=21% Similarity=0.394 Sum_probs=186.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC--cHHH
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT--DMDR 367 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~--~~~~ 367 (614)
..++++|++. +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. ....
T Consensus 256 ~~l~~~~~~~----------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~ 325 (501)
T PRK11288 256 VRLRLDGLKG----------PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDA 325 (501)
T ss_pred cEEEEecccc----------CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHH
Confidence 3588898872 138999999999999999999999999999999999999999999999998753 2334
Q ss_pred hhcceEEEcCCC---CCCCCCCHHHHHHHHhhhc----C--CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHH
Q 007178 368 IYTSMGVCPQED---LLWETLTGREHLLFYGRLK----N--LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 438 (614)
Q Consensus 368 ~~~~ig~~~Q~~---~l~~~lTv~e~l~~~~~~~----~--~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqr 438 (614)
.++.+||+||++ .+++.+|+.||+.+..... + ....+.+++++++++.+++.+ +..++++.+||||||||
T Consensus 326 ~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGq~qr 404 (501)
T PRK11288 326 IRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKT-PSREQLIMNLSGGNQQK 404 (501)
T ss_pred HhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCccc-CCccCccccCCHHHHHH
Confidence 567899999986 4889999999998643211 1 122233457889999999942 36899999999999999
Q ss_pred HHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHH
Q 007178 439 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 515 (614)
Q Consensus 439 l~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~ 515 (614)
|+||+||+.+|++|||||||+|||+.++++++++|+++ ++|.|||++|||+++++.+|||+++|++|++++.|++++
T Consensus 405 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~ 482 (501)
T PRK11288 405 AILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQ 482 (501)
T ss_pred HHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999999986 469999999999999999999999999999999987764
No 282
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=3.9e-42 Score=344.29 Aligned_cols=194 Identities=32% Similarity=0.515 Sum_probs=169.0
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCC--CCCHHHHHHHHh
Q 007178 318 LALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWE--TLTGREHLLFYG 395 (614)
Q Consensus 318 l~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~--~lTv~e~l~~~~ 395 (614)
|++++||++||+||||||||||+++|+|+++|++|+|.++|+++. ..++++||+||++.+++ .+|++||+.+..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG----KGWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch----HhhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 578999999999999999999999999999999999999998763 24578999999987643 479999998753
Q ss_pred hhc-C---CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHH
Q 007178 396 RLK-N---LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN 471 (614)
Q Consensus 396 ~~~-~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~ 471 (614)
... + ....+.++++.++++.+++. +..++++.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~ 154 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLT--ELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTE 154 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCc--hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 210 1 12223456788999999996 37899999999999999999999999999999999999999999999999
Q ss_pred HHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 472 VVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 472 ~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
.|++++ +|+|||++||+++++..+|||++++ +|+++..|+++++.+
T Consensus 155 ~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~ 201 (223)
T TIGR03771 155 LFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQD 201 (223)
T ss_pred HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcC
Confidence 999864 6999999999999999999999999 899999999887744
No 283
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=3.2e-42 Score=389.97 Aligned_cols=216 Identities=28% Similarity=0.533 Sum_probs=188.0
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhh
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 369 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~ 369 (614)
.|+++|+++.|++ ++++++|+||++++||.+||+|||||||||+++.|.|+++|++|+|.+||.|++. ....+|
T Consensus 328 ~I~f~~vsf~y~~-----~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr 402 (567)
T COG1132 328 SIEFENVSFSYPG-----KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLR 402 (567)
T ss_pred eEEEEEEEEEcCC-----CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHH
Confidence 4999999999984 3679999999999999999999999999999999999999999999999999976 667889
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHH
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 440 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~ 440 (614)
++||++||++.||.+ |++||+.++..- .++ +++.++++..++.+ +.........||||||||++
T Consensus 403 ~~I~~V~Qd~~LF~~-TI~~NI~~g~~~--at~----eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrla 475 (567)
T COG1132 403 KRIGIVSQDPLLFSG-TIRENIALGRPD--ATD----EEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLA 475 (567)
T ss_pred HhccEEcccceeecc-cHHHHHhcCCCC--CCH----HHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHH
Confidence 999999999999995 999999986321 122 33344444332211 12334555689999999999
Q ss_pred HHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 441 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 441 ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
||||++.+|++++||||||+||+.+.+.+.+.+.+..+|+|+++++|.++.+.. ||+|++|++|++++.|++++|.++
T Consensus 476 iARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~-aD~IiVl~~G~i~e~G~h~eLl~~ 553 (567)
T COG1132 476 IARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKN-ADRIIVLDNGRIVERGTHEELLAK 553 (567)
T ss_pred HHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHh-CCEEEEEECCEEEEecCHHHHHHc
Confidence 999999999999999999999999999999999987788999999999999987 999999999999999999999887
No 284
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=2.8e-42 Score=399.92 Aligned_cols=218 Identities=21% Similarity=0.376 Sum_probs=187.8
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 368 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~ 368 (614)
..|+++|++++|+. ++.+|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|+++|.|+.. +.+.+
T Consensus 472 ~~I~~~~vsf~y~~-----~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~l 546 (708)
T TIGR01193 472 GDIVINDVSYSYGY-----GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTL 546 (708)
T ss_pred CcEEEEEEEEEcCC-----CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHH
Confidence 35999999999973 3569999999999999999999999999999999999999999999999999865 56778
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 439 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 439 (614)
|++|||+||++.+|+. |++||+.++.. ...+ ++++.++++..++.+ +........+||||||||+
T Consensus 547 r~~i~~v~Q~~~lf~g-TI~eNi~l~~~-~~~~----~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRi 620 (708)
T TIGR01193 547 RQFINYLPQEPYIFSG-SILENLLLGAK-ENVS----QDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRI 620 (708)
T ss_pred HHheEEEecCceehhH-HHHHHHhccCC-CCCC----HHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHH
Confidence 8999999999999987 99999988522 1112 344555666555431 1123445678999999999
Q ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 440 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 440 ~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
+||||++++|+++|||||||+||+.+++.+.+.|++. +|+|+|++||+++.+. .||||++|++|++++.|+.+++.++
T Consensus 621 alARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~-~~D~i~~l~~G~i~~~G~~~~L~~~ 698 (708)
T TIGR01193 621 ALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAK-QSDKIIVLDHGKIIEQGSHDELLDR 698 (708)
T ss_pred HHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHH-cCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999999999875 6899999999999875 6999999999999999999999876
Q ss_pred c
Q 007178 520 Y 520 (614)
Q Consensus 520 ~ 520 (614)
.
T Consensus 699 ~ 699 (708)
T TIGR01193 699 N 699 (708)
T ss_pred C
Confidence 4
No 285
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=4e-42 Score=384.12 Aligned_cols=216 Identities=20% Similarity=0.374 Sum_probs=185.2
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc-H-H
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-M-D 366 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~-~-~ 366 (614)
.++++++|+++ .+++|+||++++||++||+||||||||||+|+|+|+.+|++|+|.++|+++... . .
T Consensus 266 ~~~l~~~~l~~-----------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~ 334 (510)
T PRK15439 266 APVLTVEDLTG-----------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQ 334 (510)
T ss_pred CceEEEeCCCC-----------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHH
Confidence 34799999983 169999999999999999999999999999999999999999999999988542 2 2
Q ss_pred HhhcceEEEcCCC---CCCCCCCHHHHHHHHhh--hc-CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHH
Q 007178 367 RIYTSMGVCPQED---LLWETLTGREHLLFYGR--LK-NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 440 (614)
Q Consensus 367 ~~~~~ig~~~Q~~---~l~~~lTv~e~l~~~~~--~~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ 440 (614)
..++++||+||++ .+++.+|+.||+..... .. .....+.+++++++++.+|+.. +..++++++||||||||++
T Consensus 335 ~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgG~kqrl~ 413 (510)
T PRK15439 335 RLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKF-NHAEQAARTLSGGNQQKVL 413 (510)
T ss_pred HHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCC-CCccCccccCCcHHHHHHH
Confidence 2456899999984 58889999999864311 11 1112234457889999999952 3689999999999999999
Q ss_pred HHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHH
Q 007178 441 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 516 (614)
Q Consensus 441 ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l 516 (614)
||+||+.+|++|||||||+|||+.+++.++++|+++ ++|.|||++|||+++++.+|||+++|++|++++.|+++++
T Consensus 414 la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 414 IAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAI 490 (510)
T ss_pred HHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccC
Confidence 999999999999999999999999999999999986 4689999999999999999999999999999999887654
No 286
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=7e-42 Score=388.01 Aligned_cols=219 Identities=21% Similarity=0.353 Sum_probs=185.4
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhh
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 369 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~ 369 (614)
.++++|++++|++ ++.+++|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|.++.. +.+..|
T Consensus 334 ~i~~~~v~~~y~~-----~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~ 408 (585)
T TIGR01192 334 AVEFRHITFEFAN-----SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLR 408 (585)
T ss_pred eEEEEEEEEECCC-----CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHH
Confidence 5999999999974 2468999999999999999999999999999999999999999999999999865 456678
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHH-----HHHHHc--CCCCCCcccccCCCCChhHHHHHHHH
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE-----ESLKSV--NLFHGGVADKQAGKYSGGMKRRLSVA 442 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~-----~~l~~~--~L~~~~~~~~~~~~LSgG~kqrl~ia 442 (614)
+.+||+||++.+++. |++||+.++.. ..+.++..+.++ +.+..+ |++ ...++...+||||||||++||
T Consensus 409 ~~i~~v~q~~~lf~~-ti~~Ni~~~~~--~~~~~~~~~a~~~~~~~~~i~~l~~g~~--t~~~~~~~~LSgGq~qrl~lA 483 (585)
T TIGR01192 409 KSIATVFQDAGLFNR-SIRENIRLGRE--GATDEEVYEAAKAAAAHDFILKRSNGYD--TLVGERGNRLSGGERQRLAIA 483 (585)
T ss_pred hheEEEccCCccCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhcccccc--chhcCCCCCCCHHHHHHHHHH
Confidence 899999999999975 99999987521 112222222211 122222 232 234567788999999999999
Q ss_pred HHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHhc
Q 007178 443 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 520 (614)
Q Consensus 443 ~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 520 (614)
|||+.+|+++||||||+|||+.+++.+++.|++..+++|||++||+++++. .||+|++|++|++++.|+.+++.++.
T Consensus 484 Rall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 560 (585)
T TIGR01192 484 RAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVR-NADLVLFLDQGRLIEKGSFQELIQKD 560 (585)
T ss_pred HHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHH-cCCEEEEEECCEEEEECCHHHHHHCC
Confidence 999999999999999999999999999999998878999999999999986 59999999999999999999997764
No 287
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=9.8e-42 Score=384.10 Aligned_cols=220 Identities=28% Similarity=0.511 Sum_probs=186.9
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 368 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~ 368 (614)
..++++|++++|++. ++.+++|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|+++.. +.+..
T Consensus 315 ~~i~~~~v~~~y~~~----~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~ 390 (544)
T TIGR01842 315 GHLSVENVTIVPPGG----KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETF 390 (544)
T ss_pred CeEEEEEEEEEcCCC----CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHH
Confidence 359999999999742 3579999999999999999999999999999999999999999999999999865 45667
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHH-----HHHHHHHHc--CCCCCCcccccCCCCChhHHHHHHH
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ-----AVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLSV 441 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~~~LSgG~kqrl~i 441 (614)
|+.+||+||++.+|+. |++||+.++.. ..+.++..+ ..++.++.+ |++ ...++...+||||||||++|
T Consensus 391 ~~~i~~v~q~~~lf~~-ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~gl~--t~~~~~g~~LSgGq~qrl~l 465 (544)
T TIGR01842 391 GKHIGYLPQDVELFPG-TVAENIARFGE--NADPEKIIEAAKLAGVHELILRLPDGYD--TVIGPGGATLSGGQRQRIAL 465 (544)
T ss_pred hhheEEecCCcccccc-cHHHHHhccCC--CCCHHHHHHHHHHhChHHHHHhCccccc--cccCCCcCCCCHHHHHHHHH
Confidence 8899999999999987 99999985431 122222211 123444544 443 34566788999999999999
Q ss_pred HHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 442 AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 442 a~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
|||++.+|+++||||||+|||+.+++++.+.+++.. +|+|+|++||+++.++ .||+|++|++|++++.|+++++.++
T Consensus 466 ARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 543 (544)
T TIGR01842 466 ARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLG-CVDKILVLQDGRIARFGERDEVLAK 543 (544)
T ss_pred HHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEeeCCHHHHhhc
Confidence 999999999999999999999999999999999874 6899999999999775 6999999999999999999988653
No 288
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-42 Score=381.74 Aligned_cols=216 Identities=20% Similarity=0.369 Sum_probs=184.5
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc--HH
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MD 366 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~--~~ 366 (614)
..+|+++|+++.+ +.+++|+||++++||++||+||||||||||+|+|+|+.+|++|+|.++|+++... .+
T Consensus 248 ~~~i~~~~l~~~~--------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 319 (491)
T PRK10982 248 EVILEVRNLTSLR--------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANE 319 (491)
T ss_pred CcEEEEeCccccc--------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHH
Confidence 3479999999974 2499999999999999999999999999999999999999999999999988542 23
Q ss_pred HhhcceEEEcCCC---CCCCCCCHHHHH-----HHHhhhcCC-CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHH
Q 007178 367 RIYTSMGVCPQED---LLWETLTGREHL-----LFYGRLKNL-KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKR 437 (614)
Q Consensus 367 ~~~~~ig~~~Q~~---~l~~~lTv~e~l-----~~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kq 437 (614)
..++.+||+||++ .+++++|+.+|. .+.....+. .....+++++++++.+++.+ +..++++.+|||||||
T Consensus 320 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGq~q 398 (491)
T PRK10982 320 AINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKT-PGHRTQIGSLSGGNQQ 398 (491)
T ss_pred HHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccC-CCcccccccCCcHHHH
Confidence 3467799999985 478889888773 222221121 23344567889999999952 3579999999999999
Q ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCH
Q 007178 438 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 513 (614)
Q Consensus 438 rl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~ 513 (614)
|++||+|++.+|++|||||||+|||+.+++.+++.|+++ ++|+|||++|||+++++.+|||+++|++|+++..++.
T Consensus 399 rv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~ 475 (491)
T PRK10982 399 KVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDT 475 (491)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEcc
Confidence 999999999999999999999999999999999999886 4699999999999999999999999999999976654
No 289
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-41 Score=382.65 Aligned_cols=208 Identities=22% Similarity=0.359 Sum_probs=180.4
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhc
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 370 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~ 370 (614)
+|+++|++|+|++ +++++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|. .
T Consensus 1 ml~i~~ls~~~~~------~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~ 64 (530)
T PRK15064 1 MLSTANITMQFGA------KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN----------E 64 (530)
T ss_pred CEEEEEEEEEeCC------cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC----------C
Confidence 4789999999973 56999999999999999999999999999999999999999999999873 3
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhh-h----------cCCC---------------------chhHHHHHHHHHHHcCC
Q 007178 371 SMGVCPQEDLLWETLTGREHLLFYGR-L----------KNLK---------------------GPALTQAVEESLKSVNL 418 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~l~~~~~-~----------~~~~---------------------~~~~~~~~~~~l~~~~L 418 (614)
.+||+||++.+++.+||+||+.+... . .+.+ ..+.+++++++++.+|+
T Consensus 65 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 144 (530)
T PRK15064 65 RLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGI 144 (530)
T ss_pred EEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCC
Confidence 59999999999999999999986421 0 0000 01234578899999999
Q ss_pred CCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCE
Q 007178 419 FHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDR 498 (614)
Q Consensus 419 ~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dr 498 (614)
.+ ...++++.+||||||||++||+||+.+|+++||||||+|||+.+++.++++|++ .|.|||++||+++++..+|||
T Consensus 145 ~~-~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~ 221 (530)
T PRK15064 145 PE-EQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTH 221 (530)
T ss_pred Ch-hHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcce
Confidence 63 234678999999999999999999999999999999999999999999999974 589999999999999999999
Q ss_pred EEEEeCCEE-EEEcCHHHHH
Q 007178 499 LGIFVDGSL-QCIGNPKELK 517 (614)
Q Consensus 499 i~il~~G~l-~~~g~~~~l~ 517 (614)
+++|++|++ .+.|++++..
T Consensus 222 i~~l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 222 MADLDYGELRVYPGNYDEYM 241 (530)
T ss_pred EEEEeCCEEEEecCCHHHHH
Confidence 999999999 4789887653
No 290
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=6.8e-42 Score=388.91 Aligned_cols=216 Identities=23% Similarity=0.414 Sum_probs=185.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhh
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 369 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~ 369 (614)
.|+++|++++|++ ++.+++|+|+++++||.++|+|+||||||||+|+|+|+++|++|+|.++|.++.. ..+..|
T Consensus 334 ~I~~~~vsf~y~~-----~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r 408 (588)
T PRK13657 334 AVEFDDVSFSYDN-----SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLR 408 (588)
T ss_pred eEEEEEEEEEeCC-----CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHH
Confidence 5999999999974 2459999999999999999999999999999999999999999999999999875 456788
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHH
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 440 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~ 440 (614)
+.|+|+||++.+|++ |++||+.++. ...+ ++++.++++.+++.+ +.........||||||||++
T Consensus 409 ~~i~~v~Q~~~lf~~-Ti~~Ni~~~~--~~~~----d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRia 481 (588)
T PRK13657 409 RNIAVVFQDAGLFNR-SIEDNIRVGR--PDAT----DEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLA 481 (588)
T ss_pred hheEEEecCcccccc-cHHHHHhcCC--CCCC----HHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHH
Confidence 999999999999986 9999998752 1112 234555555555421 01223445679999999999
Q ss_pred HHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 441 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 441 ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
|||||+.+|+++|||||||+||+.+++.+.+.|++..+++|+|++||+++.+. .||||++|++|++++.|+.+++.++
T Consensus 482 lARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~-~~D~ii~l~~G~i~~~g~~~~l~~~ 559 (588)
T PRK13657 482 IARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVR-NADRILVFDNGRVVESGSFDELVAR 559 (588)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHH-hCCEEEEEECCEEEEeCCHHHHHHC
Confidence 99999999999999999999999999999999998877899999999998875 5999999999999999999999765
No 291
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=7.1e-42 Score=395.62 Aligned_cols=219 Identities=26% Similarity=0.478 Sum_probs=188.7
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 368 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~ 368 (614)
..|+++|++++|++. ++.+++|+||++++||.++|+|+||||||||+|+|+|+++|++|+|+++|.++.. +.+..
T Consensus 454 ~~i~~~~vsf~y~~~----~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~ 529 (694)
T TIGR01846 454 GAITFENIRFRYAPD----SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWL 529 (694)
T ss_pred CeEEEEEEEEEcCCC----CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHH
Confidence 359999999999742 3569999999999999999999999999999999999999999999999999975 56678
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 439 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 439 (614)
|+++|||||++.+|+. |++||+.+... ..+ ++++.++++..++.+ +........+||||||||+
T Consensus 530 r~~i~~v~q~~~lf~~-ti~eNi~~~~~--~~~----~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri 602 (694)
T TIGR01846 530 RRQMGVVLQENVLFSR-SIRDNIALCNP--GAP----FEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRI 602 (694)
T ss_pred HHhCeEEccCCeehhh-hHHHHHhcCCC--CCC----HHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHH
Confidence 8999999999999986 99999987421 112 234444555544321 1234456778999999999
Q ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 440 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 440 ~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
+||||++.+|+++||||||+|||+.+++++.+.|++..+|+|+|++||+++.+.. ||||++|++|++++.|+.+++.++
T Consensus 603 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~ii~l~~G~i~~~g~~~~l~~~ 681 (694)
T TIGR01846 603 AIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRA-CDRIIVLEKGQIAESGRHEELLAL 681 (694)
T ss_pred HHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHh-CCEEEEEeCCEEEEeCCHHHHHHc
Confidence 9999999999999999999999999999999999988789999999999999865 999999999999999999999776
Q ss_pred c
Q 007178 520 Y 520 (614)
Q Consensus 520 ~ 520 (614)
.
T Consensus 682 ~ 682 (694)
T TIGR01846 682 Q 682 (694)
T ss_pred C
Confidence 4
No 292
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=6.9e-42 Score=337.70 Aligned_cols=193 Identities=22% Similarity=0.393 Sum_probs=159.4
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcc
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 371 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ 371 (614)
++++||+|+|+++.+ +.+.+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~-~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQ-ETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG------------S 67 (204)
T ss_pred CEEeEEEEecCCCCc-cccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC------------E
Confidence 468999999974200 003699999999999999999999999999999999999999999999998 4
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCC---------CCCcccccCCCCChhHHHHHHHH
Q 007178 372 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLF---------HGGVADKQAGKYSGGMKRRLSVA 442 (614)
Q Consensus 372 ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~---------~~~~~~~~~~~LSgG~kqrl~ia 442 (614)
+||+||++.+++ .|++||+.+.... .. ++..+.++.+++. .....++++.+||+|||||++||
T Consensus 68 i~~~~q~~~l~~-~t~~enl~~~~~~---~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~la 139 (204)
T cd03250 68 IAYVSQEPWIQN-GTIRENILFGKPF---DE----ERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLA 139 (204)
T ss_pred EEEEecCchhcc-CcHHHHhccCCCc---CH----HHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHH
Confidence 999999999885 6999999875332 11 1122223332221 01245677899999999999999
Q ss_pred HHHhCCCCEEEEeCCCCCCCHHHHHHHHHH-HHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCE
Q 007178 443 ISLIGNPKVVYMDEPSTGLDPASRNNLWNV-VKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGS 506 (614)
Q Consensus 443 ~al~~~p~vllLDEPtsgLD~~~~~~i~~~-l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~ 506 (614)
|||+.+|+++||||||+|||+.+++.+.+. +++. ++|+|||++||+++++.. |||+++|++|+
T Consensus 140 ral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 140 RAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQIVVLDNGR 204 (204)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh-CCEEEEEeCCC
Confidence 999999999999999999999999999984 5655 458999999999999998 99999999985
No 293
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.2e-42 Score=366.02 Aligned_cols=214 Identities=24% Similarity=0.477 Sum_probs=190.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhh
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 369 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~ 369 (614)
.|+++|+++.|+. ++++|+++||+|++||-+||+|+|||||||++|+|.+++. .+|+|++||.|+.+ ..+.+|
T Consensus 351 ~I~F~dV~f~y~~-----k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR 424 (591)
T KOG0057|consen 351 SIEFDDVHFSYGP-----KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLR 424 (591)
T ss_pred cEEEEeeEEEeCC-----CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhh
Confidence 5999999999984 4569999999999999999999999999999999999999 99999999999976 667889
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC------C---CcccccCCCCChhHHHHHH
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH------G---GVADKQAGKYSGGMKRRLS 440 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~------~---~~~~~~~~~LSgG~kqrl~ 440 (614)
+.|||+|||..||++ |+.+|+.++. . ....+++.++.++.|+++ + .....+...||||||||++
T Consensus 425 ~~Ig~VPQd~~LFnd-TIl~NI~YGn-~-----sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvs 497 (591)
T KOG0057|consen 425 QSIGVVPQDSVLFND-TILYNIKYGN-P-----SASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVS 497 (591)
T ss_pred hheeEeCCcccccch-hHHHHhhcCC-C-----CcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHH
Confidence 999999999999998 9999998753 1 122456677777888753 0 1234556679999999999
Q ss_pred HHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 441 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 441 ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
+|||++.||+++++|||||.||.++.+++.+.+.+...|+|+|++-|+++.+.. ||+|+++++|++++.|+.+++..
T Consensus 498 laRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~-~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 498 LARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKD-FDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred HHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhc-CCEEEEEECCeeEEeccHHHHhh
Confidence 999999999999999999999999999999999997789999999999999886 99999999999999999999987
No 294
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=8.9e-42 Score=386.23 Aligned_cols=219 Identities=19% Similarity=0.378 Sum_probs=188.2
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhh
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 369 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~ 369 (614)
.|+++|++++|+.. ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. +....|
T Consensus 313 ~I~~~~v~~~y~~~----~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~ 388 (569)
T PRK10789 313 ELDVNIRQFTYPQT----DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWR 388 (569)
T ss_pred cEEEEEEEEECCCC----CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHH
Confidence 58999999999742 3569999999999999999999999999999999999999999999999999865 456778
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHH
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 440 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~ 440 (614)
+.+||+||++.+|+. |++||+.++.. .. .+++++++++..++.+ +...+....+||||||||++
T Consensus 389 ~~i~~v~q~~~lf~~-ti~~Ni~~~~~--~~----~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~ 461 (569)
T PRK10789 389 SRLAVVSQTPFLFSD-TVANNIALGRP--DA----TQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRIS 461 (569)
T ss_pred hheEEEccCCeeccc-cHHHHHhcCCC--CC----CHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHH
Confidence 899999999999986 99999987421 11 1334555666655531 11234556789999999999
Q ss_pred HHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHhc
Q 007178 441 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 520 (614)
Q Consensus 441 ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 520 (614)
||||++.+|+++||||||+|||+.+++++++.|++..+|+|+|++||+++.+. .||||++|++|++++.|+.+++.++.
T Consensus 462 lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 540 (569)
T PRK10789 462 IARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALT-EASEILVMQHGHIAQRGNHDQLAQQS 540 (569)
T ss_pred HHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHH-cCCEEEEEeCCEEEEecCHHHHHHcC
Confidence 99999999999999999999999999999999998878999999999998876 59999999999999999999997654
Q ss_pred C
Q 007178 521 G 521 (614)
Q Consensus 521 ~ 521 (614)
+
T Consensus 541 ~ 541 (569)
T PRK10789 541 G 541 (569)
T ss_pred C
Confidence 3
No 295
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.8e-41 Score=323.17 Aligned_cols=159 Identities=30% Similarity=0.543 Sum_probs=147.4
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc--HHHhh
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDRIY 369 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~--~~~~~ 369 (614)
++++|++|.|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .+..+
T Consensus 1 l~~~~l~~~~~~------~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~ 74 (163)
T cd03216 1 LELRGITKRFGG------VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARR 74 (163)
T ss_pred CEEEEEEEEECC------eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHh
Confidence 468999999973 4699999999999999999999999999999999999999999999999988643 23456
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCC
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 449 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p 449 (614)
+.+||+|| ||||||||+++|||++.+|
T Consensus 75 ~~i~~~~q-----------------------------------------------------LS~G~~qrl~laral~~~p 101 (163)
T cd03216 75 AGIAMVYQ-----------------------------------------------------LSVGERQMVEIARALARNA 101 (163)
T ss_pred cCeEEEEe-----------------------------------------------------cCHHHHHHHHHHHHHhcCC
Confidence 78999999 9999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEE
Q 007178 450 KVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQC 509 (614)
Q Consensus 450 ~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~ 509 (614)
+++||||||+|||+.+++.+++.|++. ++|+|||++||+++++.++|||+++|++|++++
T Consensus 102 ~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 102 RLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999986 468999999999999999999999999999875
No 296
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1.1e-41 Score=386.30 Aligned_cols=219 Identities=23% Similarity=0.462 Sum_probs=188.0
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhh
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 369 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~ 369 (614)
.|+++|++++|++.. ++.+++|+||++++||.++|+|+||||||||+|+|+|+++|++|+|.++|.++.+ +...+|
T Consensus 337 ~i~~~~v~f~y~~~~---~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~ 413 (576)
T TIGR02204 337 EIEFEQVNFAYPARP---DQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELR 413 (576)
T ss_pred eEEEEEEEEECCCCC---CCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHH
Confidence 599999999997421 2569999999999999999999999999999999999999999999999999865 456678
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHH
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 440 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~ 440 (614)
+++|||||++.+|++ |++||+.++. + +..++++.++++.+++.+ +.........||||||||++
T Consensus 414 ~~i~~~~Q~~~lf~~-Ti~~Ni~~~~-----~-~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~ 486 (576)
T TIGR02204 414 ARMALVPQDPVLFAA-SVMENIRYGR-----P-DATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIA 486 (576)
T ss_pred HhceEEccCCccccc-cHHHHHhcCC-----C-CCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHH
Confidence 899999999999986 9999998742 1 112345666677666531 01223445679999999999
Q ss_pred HHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHhc
Q 007178 441 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 520 (614)
Q Consensus 441 ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 520 (614)
+|||++.+|+++|||||||+||+.+++.+.+.+++..+++|+|++||+++... .|||++.|++|++++.|+++++.++.
T Consensus 487 laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~-~~d~vi~l~~g~~~~~g~~~~l~~~~ 565 (576)
T TIGR02204 487 IARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVL-KADRIVVMDQGRIVAQGTHAELIAKG 565 (576)
T ss_pred HHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEEeeecHHHHHHcC
Confidence 99999999999999999999999999999999998877999999999998875 59999999999999999999987653
No 297
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2e-41 Score=382.03 Aligned_cols=207 Identities=25% Similarity=0.294 Sum_probs=180.9
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 369 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~ 369 (614)
++|+++||+|+|++ ++.+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.
T Consensus 5 ~~l~i~~l~~~y~~-----~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~---------- 69 (556)
T PRK11819 5 YIYTMNRVSKVVPP-----KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG---------- 69 (556)
T ss_pred EEEEEeeEEEEeCC-----CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC----------
Confidence 47999999999972 256999999999999999999999999999999999999999999998751
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhh-hc-------------CCCc----------------------hhHHHHHHHHH
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGR-LK-------------NLKG----------------------PALTQAVEESL 413 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~-~~-------------~~~~----------------------~~~~~~~~~~l 413 (614)
..+||+||++.+++.+|+.||+.+... ++ +... .+.++++++++
T Consensus 70 ~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 149 (556)
T PRK11819 70 IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAM 149 (556)
T ss_pred CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 459999999999999999999987421 10 1110 01245688899
Q ss_pred HHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHH
Q 007178 414 KSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAE 493 (614)
Q Consensus 414 ~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~ 493 (614)
+.+|+. ..++++++||||||||++||+||+.+|+++||||||+|||+.+++.+.+.|++.. .|||++||+++++.
T Consensus 150 ~~~gl~---~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~~ 224 (556)
T PRK11819 150 DALRCP---PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFLD 224 (556)
T ss_pred HhCCCC---cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHH
Confidence 999994 3689999999999999999999999999999999999999999999999998864 49999999999999
Q ss_pred hhCCEEEEEeCCEEE-EEcCHHHH
Q 007178 494 ALCDRLGIFVDGSLQ-CIGNPKEL 516 (614)
Q Consensus 494 ~l~dri~il~~G~l~-~~g~~~~l 516 (614)
.+||+|++|++|+++ ..|+.++.
T Consensus 225 ~~~d~i~~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 225 NVAGWILELDRGRGIPWEGNYSSW 248 (556)
T ss_pred hhcCeEEEEeCCEEEEecCCHHHH
Confidence 999999999999986 77887764
No 298
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.6e-41 Score=338.54 Aligned_cols=200 Identities=21% Similarity=0.310 Sum_probs=165.4
Q ss_pred EEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc-----HHH
Q 007178 293 ISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-----MDR 367 (614)
Q Consensus 293 ~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~-----~~~ 367 (614)
.+.|+.+.|++ ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ...
T Consensus 2 ~~~~~~~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (218)
T cd03290 2 QVTNGYFSWGS-----GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR 76 (218)
T ss_pred eeeeeEEecCC-----CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchh
Confidence 47899999974 25699999999999999999999999999999999999999999999999887431 123
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHH
Q 007178 368 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRR 438 (614)
Q Consensus 368 ~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqr 438 (614)
.++.+||+||++.++ ..|++||+.+.... .. ++..++++.+++.+ +...++++.+||||||||
T Consensus 77 ~~~~i~~~~q~~~~~-~~t~~~nl~~~~~~---~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qr 148 (218)
T cd03290 77 NRYSVAYAAQKPWLL-NATVEENITFGSPF---NK----QRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQR 148 (218)
T ss_pred hcceEEEEcCCCccc-cccHHHHHhhcCcC---CH----HHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHH
Confidence 456899999999888 47999999875321 11 22334455555421 012456789999999999
Q ss_pred HHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHH--HHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCE
Q 007178 439 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN--VVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGS 506 (614)
Q Consensus 439 l~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~--~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~ 506 (614)
++||||++.+|+++||||||+|||+.+++.+++ +++.++ +|+|||++||+++++. .||++++|++|+
T Consensus 149 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~G~ 218 (218)
T cd03290 149 ICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLP-HADWIIAMKDGS 218 (218)
T ss_pred HHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHh-hCCEEEEecCCC
Confidence 999999999999999999999999999999998 566654 5899999999999986 699999999884
No 299
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-41 Score=380.32 Aligned_cols=207 Identities=24% Similarity=0.315 Sum_probs=183.3
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 369 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~ 369 (614)
.+++++|++|.|++ +.+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.
T Consensus 318 ~~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~---------- 381 (530)
T PRK15064 318 NALEVENLTKGFDN------GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN---------- 381 (530)
T ss_pred ceEEEEeeEEeeCC------ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc----------
Confidence 47999999999973 46999999999999999999999999999999999999999999999873
Q ss_pred cceEEEcCCCC--CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhC
Q 007178 370 TSMGVCPQEDL--LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 447 (614)
Q Consensus 370 ~~ig~~~Q~~~--l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~ 447 (614)
+.+||+||++. +++.+|++||+.+... ....+++++++++.+++.. +..++++.+||||||||++||+|++.
T Consensus 382 ~~i~~~~q~~~~~~~~~~t~~~~~~~~~~-----~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGq~qrv~la~al~~ 455 (530)
T PRK15064 382 ANIGYYAQDHAYDFENDLTLFDWMSQWRQ-----EGDDEQAVRGTLGRLLFSQ-DDIKKSVKVLSGGEKGRMLFGKLMMQ 455 (530)
T ss_pred eEEEEEcccccccCCCCCcHHHHHHHhcc-----CCccHHHHHHHHHHcCCCh-hHhcCcccccCHHHHHHHHHHHHHhc
Confidence 46999999864 5667999999875321 1122456889999999942 36799999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEE-EEcCHHHHHHhc
Q 007178 448 NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQ-CIGNPKELKARY 520 (614)
Q Consensus 448 ~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~-~~g~~~~l~~~~ 520 (614)
+|+++||||||+|||+.+++.+++.|++. +.|||++|||++++..+|||+++|++|+++ +.|+++++.+..
T Consensus 456 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~~ 527 (530)
T PRK15064 456 KPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRSQ 527 (530)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHHh
Confidence 99999999999999999999999999876 359999999999999999999999999998 889998887654
No 300
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-42 Score=342.15 Aligned_cols=198 Identities=24% Similarity=0.440 Sum_probs=178.0
Q ss_pred eeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc-----HHHhhcceEEEcCCCCCCCCCCHHH
Q 007178 315 GLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-----MDRIYTSMGVCPQEDLLWETLTGRE 389 (614)
Q Consensus 315 ~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~-----~~~~~~~ig~~~Q~~~l~~~lTv~e 389 (614)
+++|+.+...++||.|++|||||||+|||+|+.+|+.|.|.+||.-+... ...-+++|||+|||..|||++||+.
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 57888887689999999999999999999999999999999999765432 2234678999999999999999999
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHH
Q 007178 390 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 469 (614)
Q Consensus 390 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i 469 (614)
||.|+.... .....+++.+.+|+.+ +.++++.+|||||||||+|+|||+.+|++|++|||.|.||..-++++
T Consensus 96 NL~YG~~~~------~~~~fd~iv~lLGI~h--LL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~Ei 167 (352)
T COG4148 96 NLRYGMWKS------MRAQFDQLVALLGIEH--LLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREI 167 (352)
T ss_pred chhhhhccc------chHhHHHHHHHhCcHH--HHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHH
Confidence 999864321 3456788999999974 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc-C-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHhc
Q 007178 470 WNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 520 (614)
Q Consensus 470 ~~~l~~~~-~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 520 (614)
+..++++. + +..|+.+||+++|+.++||||++|++||+.+.|..+++.+..
T Consensus 168 lpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 168 LPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred HHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 99999974 3 789999999999999999999999999999999999987653
No 301
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.5e-42 Score=341.92 Aligned_cols=199 Identities=27% Similarity=0.452 Sum_probs=179.2
Q ss_pred CeEEEEeEEEEcCCCCC--CC-ccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHH
Q 007178 290 HAIISDNLRKIYPGRDG--NP-EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMD 366 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~--~~-~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~ 366 (614)
..++++||+|.|+.+.+ .. ...|++||||+|++||++||+|.||||||||-|+|.|+++||+|+|+++|+++....
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~- 81 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS- 81 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-
Confidence 46899999999975321 11 248999999999999999999999999999999999999999999999999864321
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHh
Q 007178 367 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 446 (614)
Q Consensus 367 ~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~ 446 (614)
.++..+++.++|+.+|+.+ ++.++++++|||||+||+.|||||+
T Consensus 82 -----------------------------------~~~~~~~v~elL~~Vgl~~-~~~~ryPhelSGGQrQRi~IARALa 125 (268)
T COG4608 82 -----------------------------------KEERRERVLELLEKVGLPE-EFLYRYPHELSGGQRQRIGIARALA 125 (268)
T ss_pred -----------------------------------hhHHHHHHHHHHHHhCCCH-HHhhcCCcccCchhhhhHHHHHHHh
Confidence 3445678999999999985 7899999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHhcCCcE
Q 007178 447 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSY 524 (614)
Q Consensus 447 ~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~--~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~~~~ 524 (614)
.+|+++++|||+|.||...+.++.+++++++ .|.|.+++|||+..+..+||||++|..|++++.|+.+++..+..+.|
T Consensus 126 l~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~HpY 205 (268)
T COG4608 126 LNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLHPY 205 (268)
T ss_pred hCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCCHH
Confidence 9999999999999999999999999999874 49999999999999999999999999999999999999998776666
Q ss_pred E
Q 007178 525 V 525 (614)
Q Consensus 525 ~ 525 (614)
+
T Consensus 206 T 206 (268)
T COG4608 206 T 206 (268)
T ss_pred H
Confidence 4
No 302
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=4.9e-41 Score=384.54 Aligned_cols=223 Identities=25% Similarity=0.380 Sum_probs=198.0
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc-HHH-
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDR- 367 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~-~~~- 367 (614)
.+++++|++|+|++.. ..+.+++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... .++
T Consensus 3 ~~l~~~nl~~~y~~~~--~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~ 80 (648)
T PRK10535 3 ALLELKDIRRSYPSGE--EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADAL 80 (648)
T ss_pred cEEEEeeEEEEeCCCC--CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHH
Confidence 4799999999996421 125699999999999999999999999999999999999999999999999998652 222
Q ss_pred ---hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 007178 368 ---IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 444 (614)
Q Consensus 368 ---~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~a 444 (614)
.++.+||+||++.+++.+|+.||+.+.....+...++.++++.++++.+||. +..++++.+||||||||++||||
T Consensus 81 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~~~~~LS~Gq~qrv~LAra 158 (648)
T PRK10535 81 AQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLE--DRVEYQPSQLSGGQQQRVSIARA 158 (648)
T ss_pred HHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh--hhhcCCcccCCHHHHHHHHHHHH
Confidence 2468999999999999999999999865555545556667889999999997 37899999999999999999999
Q ss_pred HhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHH
Q 007178 445 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 517 (614)
Q Consensus 445 l~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 517 (614)
|+.+|+++||||||+|||+.+++.+.+++++++ +|+|||++||+++.++ .|||+++|++|++++.|++++..
T Consensus 159 L~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 159 LMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAA-QAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHH-hCCEEEEEECCEEEeecCccccc
Confidence 999999999999999999999999999999864 6999999999999886 59999999999999999998774
No 303
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1.2e-41 Score=385.68 Aligned_cols=218 Identities=24% Similarity=0.420 Sum_probs=187.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhh
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 369 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~ 369 (614)
.++++|++++|++. ++.+++|+||++++||.++|+|+||||||||+++|+|+++|++|+|+++|.++.. +.+..|
T Consensus 330 ~i~~~~v~f~y~~~----~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~ 405 (571)
T TIGR02203 330 DVEFRNVTFRYPGR----DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLR 405 (571)
T ss_pred eEEEEEEEEEcCCC----CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHH
Confidence 59999999999742 2569999999999999999999999999999999999999999999999999864 456778
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHH
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 440 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~ 440 (614)
++++||||++.+|++ |++||+.++. . ++..+++++++++.+|+.+ +.........||||||||++
T Consensus 406 ~~i~~v~Q~~~lf~~-Ti~~Ni~~~~-~----~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRia 479 (571)
T TIGR02203 406 RQVALVSQDVVLFND-TIANNIAYGR-T----EQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLA 479 (571)
T ss_pred hhceEEccCcccccc-cHHHHHhcCC-C----CCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHH
Confidence 899999999999987 9999998752 1 1122456677777777642 01122334579999999999
Q ss_pred HHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 441 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 441 ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
||||++.+|++++||||||+||+.+++.+.+.|++..+++|+|++||+.+... .||+|++|++|++++.|+.+++.++
T Consensus 480 LARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~-~~D~ii~l~~g~i~~~g~~~~l~~~ 557 (571)
T TIGR02203 480 IARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIE-KADRIVVMDDGRIVERGTHNELLAR 557 (571)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHH-hCCEEEEEeCCEEEeeCCHHHHHHc
Confidence 99999999999999999999999999999999998878899999999998764 6999999999999999999998754
No 304
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=2.3e-41 Score=336.38 Aligned_cols=193 Identities=20% Similarity=0.314 Sum_probs=165.7
Q ss_pred ceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEE-EcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHH
Q 007178 311 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY-VQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 389 (614)
Q Consensus 311 ~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~-i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e 389 (614)
++++|+||+|++||++||+||||||||||+|+|+|+++|++|+|. ++|..+. + .|.+.+++.+|++|
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~---------~---~~~~~l~~~ltv~e 68 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP---------L---GANSFILPGLTGEE 68 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceec---------c---ccccccCCcCcHHH
Confidence 379999999999999999999999999999999999999999997 7765321 2 24567889999999
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHH
Q 007178 390 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 469 (614)
Q Consensus 390 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i 469 (614)
|+.+....++...++. .+.+.+..++. +..++++++||||||||+++|+|++.+|+++||||||+++|+.+++.+
T Consensus 69 nl~~~~~~~~~~~~~~---~~~~~~~~~l~--~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~ 143 (213)
T PRK15177 69 NARMMASLYGLDGDEF---SHFCYQLTQLE--QCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRM 143 (213)
T ss_pred HHHHHHHHcCCCHHHH---HHHHHHHhChh--HHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHH
Confidence 9999877655443332 23344566775 367899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHhc
Q 007178 470 WNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 520 (614)
Q Consensus 470 ~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 520 (614)
++.+.+..+++++|++||++++++.+||++++|++|+++..|+.++.++.+
T Consensus 144 ~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 194 (213)
T PRK15177 144 QAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATALF 194 (213)
T ss_pred HHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHHHH
Confidence 998865434578999999999999999999999999999999999987654
No 305
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.6e-41 Score=331.43 Aligned_cols=191 Identities=20% Similarity=0.280 Sum_probs=166.5
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhc
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 370 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~ 370 (614)
+++++|++|+|++ +.++ ++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.... ++
T Consensus 1 ~l~~~~l~~~~~~------~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~---~~ 70 (195)
T PRK13541 1 MLSLHQLQFNIEQ------KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA---KP 70 (195)
T ss_pred CeEEEEeeEEECC------cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh---hh
Confidence 3789999999963 3455 599999999999999999999999999999999999999999999875321 34
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCC
Q 007178 371 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 450 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~ 450 (614)
.++|++|++.+++.+|++||+.+.....+ ..++++++++.+++. +..++++.+||||||||+++|||++.+|+
T Consensus 71 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~~-----~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~~rl~la~al~~~p~ 143 (195)
T PRK13541 71 YCTYIGHNLGLKLEMTVFENLKFWSEIYN-----SAETLYAAIHYFKLH--DLLDEKCYSLSSGMQKIVAIARLIACQSD 143 (195)
T ss_pred hEEeccCCcCCCccCCHHHHHHHHHHhcc-----cHHHHHHHHHHcCCH--hhhccChhhCCHHHHHHHHHHHHHhcCCC
Confidence 68999999888888999999988654332 234677889999996 37899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEE
Q 007178 451 VVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRL 499 (614)
Q Consensus 451 vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri 499 (614)
++||||||+|||+.+++.+++++++. ++|+|||++||++++++. ||.+
T Consensus 144 ~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~-~~~~ 192 (195)
T PRK13541 144 LWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKS-AQIL 192 (195)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccch-hhee
Confidence 99999999999999999999999864 568999999999998876 7765
No 306
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=4.5e-41 Score=383.06 Aligned_cols=209 Identities=29% Similarity=0.488 Sum_probs=188.2
Q ss_pred ccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCC
Q 007178 309 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT---SGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETL 385 (614)
Q Consensus 309 ~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~---sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~l 385 (614)
++.+|+|+|+++++||+++|+||||||||||+++|+|..+|. +|+|.++|+++.. ...++.+|||||++.+++.+
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~--~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDA--KEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCH--HHHhhhceeeccccccCccC
Confidence 467999999999999999999999999999999999999885 8999999998752 35677899999999999999
Q ss_pred CHHHHHHHHhhhcC---CCchhHHHHHHHHHHHcCCCCCCcccccCC------CCChhHHHHHHHHHHHhCCCCEEEEeC
Q 007178 386 TGREHLLFYGRLKN---LKGPALTQAVEESLKSVNLFHGGVADKQAG------KYSGGMKRRLSVAISLIGNPKVVYMDE 456 (614)
Q Consensus 386 Tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~------~LSgG~kqrl~ia~al~~~p~vllLDE 456 (614)
||+||+.|.+.++. .++++.+++++++++.+||.+ .+|++++ .||||||||++||+||+.+|++++|||
T Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDE 192 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRK--CANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDE 192 (617)
T ss_pred cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchh--cCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeC
Confidence 99999999887653 234556678999999999974 6778776 599999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHH-HHHhhCCEEEEEeCCEEEEEcCHHHHHHhcC
Q 007178 457 PSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSME-EAEALCDRLGIFVDGSLQCIGNPKELKARYG 521 (614)
Q Consensus 457 PtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~-e~~~l~dri~il~~G~l~~~g~~~~l~~~~~ 521 (614)
||+|||+.+++.+++.+++.. +|+|||+++|++. ++.++||++++|++|+++..|+++++.+.+.
T Consensus 193 PtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~ 259 (617)
T TIGR00955 193 PTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFS 259 (617)
T ss_pred CCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHH
Confidence 999999999999999999864 5999999999995 8889999999999999999999999987653
No 307
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=3.7e-41 Score=374.92 Aligned_cols=216 Identities=23% Similarity=0.301 Sum_probs=179.4
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-CccEEEEcCeeCCC--cH
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-TSGTAYVQGLDIRT--DM 365 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-~sG~i~i~G~~i~~--~~ 365 (614)
.++++++|++|.|++ +.+++|+||++++||++||+||||||||||+|+|+|+.+| ++|+|+++|+++.. ..
T Consensus 258 ~~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~ 331 (490)
T PRK10938 258 EPRIVLNNGVVSYND------RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETI 331 (490)
T ss_pred CceEEEeceEEEECC------eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCH
Confidence 457999999999973 4699999999999999999999999999999999998876 79999999987632 22
Q ss_pred HHhhcceEEEcCCCCCCCC--CCHHHHHHHHhh----hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHH
Q 007178 366 DRIYTSMGVCPQEDLLWET--LTGREHLLFYGR----LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRL 439 (614)
Q Consensus 366 ~~~~~~ig~~~Q~~~l~~~--lTv~e~l~~~~~----~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl 439 (614)
...++++||+||++.++.. .|+++++.+... ..+...++.+++++++++.++|.+ +..++++.+||||||||+
T Consensus 332 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGq~qrv 410 (490)
T PRK10938 332 WDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDK-RTADAPFHSLSWGQQRLA 410 (490)
T ss_pred HHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCch-hhccCchhhCCHHHHHHH
Confidence 3456789999998766443 467766543211 111112334567889999999962 267999999999999999
Q ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCC-ceEEEEcCCHHHHHh-hCCEEEEEeCCEEEEEc
Q 007178 440 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQG-RAIILTTHSMEEAEA-LCDRLGIFVDGSLQCIG 511 (614)
Q Consensus 440 ~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g-~tIil~TH~~~e~~~-l~dri~il~~G~l~~~g 511 (614)
+||+||+.+|+++||||||+|||+.+++.+++.|+++ ++| .|||++|||++++.. +|||+++|++|+++..-
T Consensus 411 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 411 LIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 9999999999999999999999999999999999986 455 479999999999987 59999999999987754
No 308
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.2e-40 Score=375.74 Aligned_cols=207 Identities=25% Similarity=0.311 Sum_probs=178.6
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 369 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~ 369 (614)
.+++++|++|+|++ ++++++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ +
T Consensus 3 ~~i~~~nls~~~~~-----~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~----------~ 67 (552)
T TIGR03719 3 YIYTMNRVSKVVPP-----KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP----------G 67 (552)
T ss_pred EEEEEeeEEEecCC-----CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC----------C
Confidence 47999999999962 24699999999999999999999999999999999999999999999875 1
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhh-hc-------------CCCchh----------------------HHHHHHHHH
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGR-LK-------------NLKGPA----------------------LTQAVEESL 413 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~-~~-------------~~~~~~----------------------~~~~~~~~l 413 (614)
..|||+||++.+++.+||+||+.+... .+ +....+ ..+++++++
T Consensus 68 ~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 147 (552)
T TIGR03719 68 IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAM 147 (552)
T ss_pred CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHH
Confidence 469999999999999999999987421 10 111111 124567788
Q ss_pred HHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHH
Q 007178 414 KSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAE 493 (614)
Q Consensus 414 ~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~ 493 (614)
+.+|+. ..++++++||||||||++||+||+.+|+++||||||++||+.+++.+.+.|++.. .|||++||+++++.
T Consensus 148 ~~~~l~---~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~--~tvIiisHd~~~~~ 222 (552)
T TIGR03719 148 DALRCP---PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYP--GTVVAVTHDRYFLD 222 (552)
T ss_pred hhCCCC---cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHH
Confidence 888884 3688999999999999999999999999999999999999999999999998763 59999999999999
Q ss_pred hhCCEEEEEeCCEEE-EEcCHHHH
Q 007178 494 ALCDRLGIFVDGSLQ-CIGNPKEL 516 (614)
Q Consensus 494 ~l~dri~il~~G~l~-~~g~~~~l 516 (614)
.+|||+++|++|+++ +.|+.++.
T Consensus 223 ~~~d~v~~l~~g~i~~~~g~~~~~ 246 (552)
T TIGR03719 223 NVAGWILELDRGRGIPWEGNYSSW 246 (552)
T ss_pred hhcCeEEEEECCEEEEecCCHHHH
Confidence 999999999999976 67888764
No 309
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2e-40 Score=342.49 Aligned_cols=204 Identities=21% Similarity=0.325 Sum_probs=169.1
Q ss_pred CCCCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHH
Q 007178 287 GTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMD 366 (614)
Q Consensus 287 ~~~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~ 366 (614)
+....|+++|+++. + +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|
T Consensus 35 ~~~~~l~i~nls~~-~-------~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------- 98 (282)
T cd03291 35 SDDNNLFFSNLCLV-G-------APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------- 98 (282)
T ss_pred CCCCeEEEEEEEEe-c-------ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC--------
Confidence 34457999999985 2 3599999999999999999999999999999999999999999999988
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHH
Q 007178 367 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKR 437 (614)
Q Consensus 367 ~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kq 437 (614)
.+||+||++.+++. |++||+.+.... .. .++.+.++.+++.+ ....++.+.+|||||||
T Consensus 99 ----~i~yv~q~~~l~~~-tv~enl~~~~~~---~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~q 166 (282)
T cd03291 99 ----RISFSSQFSWIMPG-TIKENIIFGVSY---DE----YRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRA 166 (282)
T ss_pred ----EEEEEeCccccccc-CHHHHhhccccc---CH----HHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHH
Confidence 28999999998885 999999864321 11 11222333333311 01234557899999999
Q ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHH-HHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHH
Q 007178 438 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVV-KRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 516 (614)
Q Consensus 438 rl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l-~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l 516 (614)
|++|||||+.+|+++||||||+|||+.+++.+.+.+ ++.++++|||++||+++++. .|||+++|++|+++..|+++++
T Consensus 167 rv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~ 245 (282)
T cd03291 167 RISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSEL 245 (282)
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHH-hCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999865 55666899999999999985 7999999999999999999988
Q ss_pred HHh
Q 007178 517 KAR 519 (614)
Q Consensus 517 ~~~ 519 (614)
.+.
T Consensus 246 ~~~ 248 (282)
T cd03291 246 QSL 248 (282)
T ss_pred Hhc
Confidence 653
No 310
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=9.4e-41 Score=319.24 Aligned_cols=164 Identities=27% Similarity=0.385 Sum_probs=148.2
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcc
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 371 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ 371 (614)
++++|++++|++ ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 1 i~~~~~~~~~~~-----~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~----------~~ 65 (166)
T cd03223 1 IELENLSLATPD-----GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG----------ED 65 (166)
T ss_pred CEEEEEEEEcCC-----CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC----------ce
Confidence 468999999963 246999999999999999999999999999999999999999999999873 56
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCE
Q 007178 372 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 451 (614)
Q Consensus 372 ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~v 451 (614)
+||+||++.++ .+|++||+.+. ++.+||||||||+++|||++.+|++
T Consensus 66 i~~~~q~~~~~-~~tv~~nl~~~--------------------------------~~~~LS~G~~~rv~laral~~~p~~ 112 (166)
T cd03223 66 LLFLPQRPYLP-LGTLREQLIYP--------------------------------WDDVLSGGEQQRLAFARLLLHKPKF 112 (166)
T ss_pred EEEECCCCccc-cccHHHHhhcc--------------------------------CCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 99999998776 57999999752 2468999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCE
Q 007178 452 VYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGS 506 (614)
Q Consensus 452 llLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~ 506 (614)
+||||||+|||+.+++.+.+.+++. ++|+|++||+++.. .+|||+++|++|.
T Consensus 113 lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~-~~~d~i~~l~~~~ 164 (166)
T cd03223 113 VFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW-KFHDRVLDLDGEG 164 (166)
T ss_pred EEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH-hhCCEEEEEcCCC
Confidence 9999999999999999999999876 68999999999876 5899999998863
No 311
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.2e-41 Score=313.00 Aligned_cols=201 Identities=26% Similarity=0.429 Sum_probs=183.7
Q ss_pred ccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhhcceEEEcCCCCCCCCCCH
Q 007178 309 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTG 387 (614)
Q Consensus 309 ~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~~~ig~~~Q~~~l~~~lTv 387 (614)
+.++|+++||++.+||..+|.||+|||||||+|+++-+..||+|++++.|+++.+ ..+..|++++||.|.+.||++ ||
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~-tV 93 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD-TV 93 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcccccc-ch
Confidence 4679999999999999999999999999999999999999999999999999976 678889999999999999998 99
Q ss_pred HHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHH
Q 007178 388 REHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRN 467 (614)
Q Consensus 388 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~ 467 (614)
+||+.|+.+++.... .+.+..++++.+++.+ ...++++.+||||||||++++|-|.-.|++|+||||||+||+.+++
T Consensus 94 eDNlifP~~~r~rr~--dr~aa~~llar~~l~~-~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr 170 (223)
T COG4619 94 EDNLIFPWQIRNRRP--DRAAALDLLARFALPD-SILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKR 170 (223)
T ss_pred hhccccchHHhccCC--ChHHHHHHHHHcCCch-hhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHH
Confidence 999999988875332 4567788999999985 6889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh--cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHH
Q 007178 468 NLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 516 (614)
Q Consensus 468 ~i~~~l~~~--~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l 516 (614)
.+-++|.++ .++++++-+|||.+++.+.+|+++-+..|++ |+.+++
T Consensus 171 ~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~---~~~~e~ 218 (223)
T COG4619 171 NIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA---GEMQEA 218 (223)
T ss_pred HHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc---cccccc
Confidence 999999885 4689999999999999999999999999965 555544
No 312
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1e-40 Score=338.63 Aligned_cols=189 Identities=25% Similarity=0.333 Sum_probs=161.1
Q ss_pred ceeeeeeEEEe-----CCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCC
Q 007178 311 VAVNGLSLALP-----SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETL 385 (614)
Q Consensus 311 ~~l~~isl~i~-----~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~l 385 (614)
+.++|++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++|. .++|+||+...+..+
T Consensus 8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~-----------~i~~~~q~~~~~~~~ 76 (246)
T cd03237 8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD-----------TVSYKPQYIKADYEG 76 (246)
T ss_pred cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc-----------eEEEecccccCCCCC
Confidence 36777777776 79999999999999999999999999999999999984 489999998877789
Q ss_pred CHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHH
Q 007178 386 TGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPAS 465 (614)
Q Consensus 386 Tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~ 465 (614)
||+|++.+.....+ . .....+++++.+++. +..++++++||||||||++||+||+.+|+++||||||++||+.+
T Consensus 77 tv~e~l~~~~~~~~--~--~~~~~~~~l~~l~l~--~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~ 150 (246)
T cd03237 77 TVRDLLSSITKDFY--T--HPYFKTEIAKPLQIE--QILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQ 150 (246)
T ss_pred CHHHHHHHHhhhcc--c--cHHHHHHHHHHcCCH--HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 99999976533221 1 123467889999996 37899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-c-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEE--EEcCHHHH
Q 007178 466 RNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQ--CIGNPKEL 516 (614)
Q Consensus 466 ~~~i~~~l~~~-~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~--~~g~~~~l 516 (614)
++.++++|++. + +|+|||++||+++++..+|||+++|+++..+ ..+++..+
T Consensus 151 ~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~ 205 (246)
T cd03237 151 RLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSL 205 (246)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHH
Confidence 99999999986 3 4899999999999999999999999765433 34555554
No 313
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.8e-40 Score=374.45 Aligned_cols=209 Identities=24% Similarity=0.355 Sum_probs=180.6
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHh
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 368 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~ 368 (614)
..+++++|+++.|++ +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++ +
T Consensus 322 ~~~l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~-------- 386 (556)
T PRK11819 322 DKVIEAENLSKSFGD------RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T-------- 386 (556)
T ss_pred CeEEEEEeEEEEECC------eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c--------
Confidence 357999999999973 5699999999999999999999999999999999999999999999853 2
Q ss_pred hcceEEEcCCC-CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhC
Q 007178 369 YTSMGVCPQED-LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 447 (614)
Q Consensus 369 ~~~ig~~~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~ 447 (614)
..+||+||++ .+++.+|++||+.+.....+.... ....+++++.+++.+ ...++++++||||||||++||+|++.
T Consensus 387 -~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~l~~~~l~~-~~~~~~~~~LSgG~~qrv~la~al~~ 462 (556)
T PRK11819 387 -VKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNR--EIPSRAYVGRFNFKG-GDQQKKVGVLSGGERNRLHLAKTLKQ 462 (556)
T ss_pred -eEEEEEeCchhhcCCCCCHHHHHHhhccccccccc--HHHHHHHHHhCCCCh-hHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 1499999996 788899999999886543332221 234567899999952 35689999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeC-CEEE-EEcCHHHHHH
Q 007178 448 NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVD-GSLQ-CIGNPKELKA 518 (614)
Q Consensus 448 ~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~-G~l~-~~g~~~~l~~ 518 (614)
+|+++||||||+|||+.+++.+++.|++.. | |||++|||+++++.+|||+++|++ |++. ..|+.++..+
T Consensus 463 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~ 533 (556)
T PRK11819 463 GGNVLLLDEPTNDLDVETLRALEEALLEFP-G-CAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEE 533 (556)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHhCC-C-eEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHH
Confidence 999999999999999999999999998874 4 899999999999999999999996 7876 4788776644
No 314
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.3e-41 Score=389.23 Aligned_cols=224 Identities=27% Similarity=0.495 Sum_probs=197.5
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhh
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 369 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~ 369 (614)
.|+++||++.|+.+ |+.++++|+||+|++||-+||+||+||||||.+.+|-..+.|++|+|.+||+|+++ +.+.+|
T Consensus 987 ~I~~~~V~F~YPsR---P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR 1063 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTR---PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLR 1063 (1228)
T ss_pred EEEEeeeEeeCCCC---CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHH
Confidence 59999999999975 46899999999999999999999999999999999999999999999999999986 778899
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCC-------C--CCcccccCCCCChhHHHHHH
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLF-------H--GGVADKQAGKYSGGMKRRLS 440 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-------~--~~~~~~~~~~LSgG~kqrl~ 440 (614)
++||.|.|+|.||.. |++||+.++ ..+ .+ ++++.++++..+.+ + +.....+..+||||||||++
T Consensus 1064 ~~i~lVsQEP~LF~~-TIrENI~YG-~~~-vs----~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIA 1136 (1228)
T KOG0055|consen 1064 KQIGLVSQEPVLFNG-TIRENIAYG-SEE-VS----EEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIA 1136 (1228)
T ss_pred HhcceeccCchhhcc-cHHHHHhcc-CCC-CC----HHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHH
Confidence 999999999999986 999999986 211 23 34555666655432 2 12344556689999999999
Q ss_pred HHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHhc
Q 007178 441 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 520 (614)
Q Consensus 441 ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 520 (614)
||||+++||+||||||.||+||.++.+.+.+.|.+...|||.|++.|.+..+.. ||.|+++++|++++.|+.++|.++-
T Consensus 1137 IARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqn-aD~I~Vi~~G~VvE~GtH~~L~~~~ 1215 (1228)
T KOG0055|consen 1137 IARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQN-ADVIAVLKNGKVVEQGTHDELLAKR 1215 (1228)
T ss_pred HHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhc-CCEEEEEECCEEEecccHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999875 9999999999999999999999965
Q ss_pred CCcEE
Q 007178 521 GGSYV 525 (614)
Q Consensus 521 ~~~~~ 525 (614)
|..|.
T Consensus 1216 G~Y~~ 1220 (1228)
T KOG0055|consen 1216 GIYFR 1220 (1228)
T ss_pred CchHH
Confidence 55443
No 315
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.2e-40 Score=342.48 Aligned_cols=233 Identities=25% Similarity=0.429 Sum_probs=209.3
Q ss_pred CeEEEEeEEEEcCCCCC-----CCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-
Q 007178 290 HAIISDNLRKIYPGRDG-----NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT- 363 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~-----~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~- 363 (614)
..++.+|++..|+-+.+ .....|++++||++++||..||+|.+|||||||=++|.++++++ |+|.++|+++..
T Consensus 275 ~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~ 353 (534)
T COG4172 275 VLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGL 353 (534)
T ss_pred ceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcccccc
Confidence 46899999999976532 12367999999999999999999999999999999999999876 999999999963
Q ss_pred ---cHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcC--CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHH
Q 007178 364 ---DMDRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKN--LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK 436 (614)
Q Consensus 364 ---~~~~~~~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~~--~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~k 436 (614)
....+|+.+-+||||| .|.|.|||.|-+.-+...++ .+.++..+++.++|+.+||++ .-+++++++.|||||
T Consensus 354 ~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp-~~r~RYPhEFSGGQR 432 (534)
T COG4172 354 SRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDP-ATRNRYPHEFSGGQR 432 (534)
T ss_pred ChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCCh-hHhhcCCcccCcchh
Confidence 3455788999999997 58999999999988877764 466778889999999999986 678999999999999
Q ss_pred HHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHH
Q 007178 437 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPK 514 (614)
Q Consensus 437 qrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~--~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~ 514 (614)
||++||||++.+|++++||||||+||..-+.++.+++++++ .|.+-+++|||+..+.++||+|++|++|++++.|+.+
T Consensus 433 QRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~ 512 (534)
T COG4172 433 QRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTE 512 (534)
T ss_pred hHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHH
Confidence 99999999999999999999999999999999999999863 5899999999999999999999999999999999999
Q ss_pred HHHHhcCCcE
Q 007178 515 ELKARYGGSY 524 (614)
Q Consensus 515 ~l~~~~~~~~ 524 (614)
++.++....|
T Consensus 513 ~if~~P~~~Y 522 (534)
T COG4172 513 AVFANPQHEY 522 (534)
T ss_pred HHhcCCCcHH
Confidence 9988765554
No 316
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=3.4e-40 Score=371.98 Aligned_cols=210 Identities=24% Similarity=0.340 Sum_probs=180.2
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHh
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 368 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~ 368 (614)
.++++++|+++.|++ +.+++|+||+|++||++||+||||||||||+++|+|+.+|++|+|.+++ +
T Consensus 320 ~~~l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~-------- 384 (552)
T TIGR03719 320 DKVIEAENLSKGFGD------KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T-------- 384 (552)
T ss_pred CeEEEEeeEEEEECC------eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c--------
Confidence 357999999999973 5699999999999999999999999999999999999999999999844 2
Q ss_pred hcceEEEcCCC-CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhC
Q 007178 369 YTSMGVCPQED-LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 447 (614)
Q Consensus 369 ~~~ig~~~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~ 447 (614)
..|||+||++ .+++.+|+.||+.+.....+.... +.+.+++++.+++.+ ...++++.+||||||||++||+||+.
T Consensus 385 -~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~l~~~~l~~-~~~~~~~~~LSgGe~qrv~la~al~~ 460 (552)
T TIGR03719 385 -VKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKR--EVPSRAYVGRFNFKG-SDQQKKVGQLSGGERNRVHLAKTLKS 460 (552)
T ss_pred -eEEEEEeCCccccCCCCcHHHHHHhhccccccCcc--hHHHHHHHHhCCCCh-hHhcCchhhCCHHHHHHHHHHHHHhh
Confidence 1599999986 588889999999886543332221 234567899999952 25689999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeC-CEEE-EEcCHHHHHHh
Q 007178 448 NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVD-GSLQ-CIGNPKELKAR 519 (614)
Q Consensus 448 ~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~-G~l~-~~g~~~~l~~~ 519 (614)
+|+++||||||+|||+.+++.+++.|++.. + |||++|||++++..+|||+++|++ |++. ..|+.++.++.
T Consensus 461 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~~ 532 (552)
T TIGR03719 461 GGNVLLLDEPTNDLDVETLRALEEALLEFA-G-CAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEED 532 (552)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHCC-C-eEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHHH
Confidence 999999999999999999999999999874 3 899999999999999999999997 5876 56777665443
No 317
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.4e-40 Score=409.78 Aligned_cols=218 Identities=18% Similarity=0.349 Sum_probs=191.2
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhh
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 369 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~ 369 (614)
.|+++|++++|+.. .+.+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+ ..+.+|
T Consensus 1234 ~I~f~nVsf~Y~~~----~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR 1309 (1495)
T PLN03232 1234 SIKFEDVHLRYRPG----LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLR 1309 (1495)
T ss_pred cEEEEEEEEEECCC----CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHH
Confidence 59999999999632 2569999999999999999999999999999999999999999999999999976 567889
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHH
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 440 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~ 440 (614)
++|+|+||++.+|++ |++|||..+. .. .++++.++++..++.+ +........+||||||||++
T Consensus 1310 ~~i~iVpQdp~LF~g-TIr~NL~~~~---~~----sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrla 1381 (1495)
T PLN03232 1310 RVLSIIPQSPVLFSG-TVRFNIDPFS---EH----NDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLS 1381 (1495)
T ss_pred hhcEEECCCCeeeCc-cHHHHcCCCC---CC----CHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHH
Confidence 999999999999997 9999997642 11 2345677777776642 01223445689999999999
Q ss_pred HHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHhc
Q 007178 441 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 520 (614)
Q Consensus 441 ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 520 (614)
|||||+++|+|||||||||+||+++.+.+.+.|++..+++|+|+++|+++.+.. ||||++|++|++++.|++++|.++.
T Consensus 1382 LARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~Gt~~eLl~~~ 1460 (1495)
T PLN03232 1382 LARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELLSRD 1460 (1495)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHHhCC
Confidence 999999999999999999999999999999999988789999999999999886 9999999999999999999998764
Q ss_pred C
Q 007178 521 G 521 (614)
Q Consensus 521 ~ 521 (614)
+
T Consensus 1461 ~ 1461 (1495)
T PLN03232 1461 T 1461 (1495)
T ss_pred C
Confidence 4
No 318
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=4.2e-40 Score=322.37 Aligned_cols=200 Identities=28% Similarity=0.453 Sum_probs=183.9
Q ss_pred ccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHH
Q 007178 309 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 388 (614)
Q Consensus 309 ~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~ 388 (614)
.+.||+|+||++++||.+||+|+||||||||+|+|+|.++||+|+|.++|+-- .- + .+| -.+-|.+|++
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~-~l---i--~lg-----~Gf~pelTGr 107 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVA-PL---I--ELG-----AGFDPELTGR 107 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEe-hh---h--hcc-----cCCCcccchH
Confidence 57899999999999999999999999999999999999999999999999531 00 0 012 2344679999
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHH
Q 007178 389 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNN 468 (614)
Q Consensus 389 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~ 468 (614)
||+.+.+.+.|+++++.+++++++.+.-+|. ++.|+|++++|.||+-||++|.|...+|++||+||-.+--|+.-+++
T Consensus 108 eNi~l~~~~~G~~~~ei~~~~~eIieFaELG--~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K 185 (249)
T COG1134 108 ENIYLRGLILGLTRKEIDEKVDEIIEFAELG--DFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEK 185 (249)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHHHH--HHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHH
Confidence 9999999999999999999999999999996 59999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHhcC
Q 007178 469 LWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG 521 (614)
Q Consensus 469 i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~ 521 (614)
-.+.+.+. ++++|||++|||++.+.++|||++.|++|+++..|+++++...|.
T Consensus 186 ~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y~ 239 (249)
T COG1134 186 CLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPAYE 239 (249)
T ss_pred HHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHHHH
Confidence 99999987 678999999999999999999999999999999999999988774
No 319
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.5e-40 Score=407.93 Aligned_cols=218 Identities=21% Similarity=0.368 Sum_probs=191.0
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 368 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~ 368 (614)
..|+++|++++|++. .+.+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+ ..+.+
T Consensus 1236 g~I~f~nVsf~Y~~~----~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~L 1311 (1622)
T PLN03130 1236 GSIKFEDVVLRYRPE----LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDL 1311 (1622)
T ss_pred CcEEEEEEEEEeCCC----CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHH
Confidence 359999999999642 2469999999999999999999999999999999999999999999999999976 56788
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 439 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 439 (614)
|++||++||++.+|++ |++|||..+. . ..++++.++++..++.+ +........+||||||||+
T Consensus 1312 R~~IsiVpQdp~LF~G-TIreNLd~~~---~----~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrl 1383 (1622)
T PLN03130 1312 RKVLGIIPQAPVLFSG-TVRFNLDPFN---E----HNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLL 1383 (1622)
T ss_pred HhccEEECCCCccccc-cHHHHhCcCC---C----CCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHH
Confidence 9999999999999997 9999997642 1 12345677777766631 0122334568999999999
Q ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 440 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 440 ~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
+|||||+.+|+|||||||||+||+.+.+.+.+.|++..+++|+|+++|+++.+.. ||||++|++|++++.|++++|.++
T Consensus 1384 aLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~-~DrIlVLd~G~IvE~Gt~~eLl~~ 1462 (1622)
T PLN03130 1384 SLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPENLLSN 1462 (1622)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHh-CCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999999998789999999999999986 999999999999999999999875
Q ss_pred c
Q 007178 520 Y 520 (614)
Q Consensus 520 ~ 520 (614)
.
T Consensus 1463 ~ 1463 (1622)
T PLN03130 1463 E 1463 (1622)
T ss_pred C
Confidence 3
No 320
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2.4e-40 Score=404.58 Aligned_cols=218 Identities=22% Similarity=0.365 Sum_probs=187.4
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC---------------------
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT--------------------- 349 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p--------------------- 349 (614)
.|+++||+++|+++. ++++|+|+||+|++|+++||+|||||||||++++|.|+++|
T Consensus 1165 ~I~f~nVsF~Y~~~~---~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~ 1241 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRP---NVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQD 1241 (1466)
T ss_pred eEEEEEEEEECCCCC---CCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccc
Confidence 599999999997532 35799999999999999999999999999999999999998
Q ss_pred ---------------------------------CccEEEEcCeeCCC-cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHh
Q 007178 350 ---------------------------------TSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYG 395 (614)
Q Consensus 350 ---------------------------------~sG~i~i~G~~i~~-~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~ 395 (614)
++|+|+++|.|+.. +.+.+|++||||||++.||+. |++|||.++.
T Consensus 1242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~g-TIreNI~~g~ 1320 (1466)
T PTZ00265 1242 YQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNM-SIYENIKFGK 1320 (1466)
T ss_pred cccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccc-cHHHHHhcCC
Confidence 69999999999976 567889999999999999975 9999999852
Q ss_pred hhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHH
Q 007178 396 RLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 466 (614)
Q Consensus 396 ~~~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~ 466 (614)
. +..+++++++++..++.+ +........+||||||||++|||||+.+|+|||||||||+||+.+.
T Consensus 1321 ~------~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE 1394 (1466)
T PTZ00265 1321 E------DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSE 1394 (1466)
T ss_pred C------CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHH
Confidence 1 112345666777666532 0122344567999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc--CCceEEEEcCCHHHHHhhCCEEEEEeC----CEEE-EEcCHHHHHHh
Q 007178 467 NNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVD----GSLQ-CIGNPKELKAR 519 (614)
Q Consensus 467 ~~i~~~l~~~~--~g~tIil~TH~~~e~~~l~dri~il~~----G~l~-~~g~~~~l~~~ 519 (614)
+.+.+.|.+.+ +++|+|++||+++.+. .||+|++|++ |+++ +.|+.++|.++
T Consensus 1395 ~~I~~~L~~~~~~~~~TvIiIaHRlsti~-~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~ 1453 (1466)
T PTZ00265 1395 KLIEKTIVDIKDKADKTIITIAHRIASIK-RSDKIVVFNNPDRTGSFVQAHGTHEELLSV 1453 (1466)
T ss_pred HHHHHHHHHHhccCCCEEEEEechHHHHH-hCCEEEEEeCCCCCCCEEEEecCHHHHHhc
Confidence 99999999873 6999999999999886 4999999999 9955 89999999863
No 321
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=4e-40 Score=369.97 Aligned_cols=200 Identities=27% Similarity=0.491 Sum_probs=173.0
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhh
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 369 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~ 369 (614)
.|+++|++++|++. ++++++|+||++++||.++|+||||||||||+|+|+|+++|++|+|.++|.++.+ +.+..|
T Consensus 320 ~i~~~~v~f~y~~~----~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr 395 (529)
T TIGR02857 320 SLEFSGLSVAYPGR----RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWR 395 (529)
T ss_pred eEEEEEEEEECCCC----CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHH
Confidence 59999999999752 2469999999999999999999999999999999999999999999999999875 456788
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHH
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 440 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~ 440 (614)
+++||+||++.+|+. |++||+.++.. . ..++++.++++..++.+ +........+||||||||++
T Consensus 396 ~~i~~v~Q~~~lf~~-ti~~Ni~~~~~--~----~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~ 468 (529)
T TIGR02857 396 DQIAWVPQHPFLFAG-TIAENIRLARP--D----ASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLA 468 (529)
T ss_pred hheEEEcCCCcccCc-CHHHHHhccCC--C----CCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHH
Confidence 999999999999986 99999987531 1 12345667777777642 01223456789999999999
Q ss_pred HHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEE
Q 007178 441 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIF 502 (614)
Q Consensus 441 ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il 502 (614)
||||++++|+++||||||++||+.+.+++.+.+++..+|+|+|++||+++.+. .||||++|
T Consensus 469 laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~~l 529 (529)
T TIGR02857 469 LARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAE-RADRIVVL 529 (529)
T ss_pred HHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH-hCCEEEeC
Confidence 99999999999999999999999999999999998878999999999999885 59999875
No 322
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=3.5e-40 Score=336.24 Aligned_cols=201 Identities=21% Similarity=0.325 Sum_probs=171.2
Q ss_pred EeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEE-----------EcCeeCCC
Q 007178 295 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY-----------VQGLDIRT 363 (614)
Q Consensus 295 ~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~-----------i~G~~i~~ 363 (614)
.|++|+|++ .+.+++|+| .+++||+++|+||||||||||+|+|+|+++|++|+|. ++|+++..
T Consensus 4 ~~~~~~y~~-----~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~ 77 (255)
T cd03236 4 DEPVHRYGP-----NSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQN 77 (255)
T ss_pred cCcceeecC-----cchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhh
Confidence 478999963 236999999 5999999999999999999999999999999999996 78887754
Q ss_pred cHHHhh---cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHH
Q 007178 364 DMDRIY---TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 440 (614)
Q Consensus 364 ~~~~~~---~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ 440 (614)
...+.+ ..++|++|+..+++. ++.+++.... .....++.+.++++.+|+. +..++.+.+||||||||++
T Consensus 78 ~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l-----~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrv~ 149 (255)
T cd03236 78 YFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELL-----KKKDERGKLDELVDQLELR--HVLDRNIDQLSGGELQRVA 149 (255)
T ss_pred hhHHhhhcccceeeecchhccCch-HHHHHHHHHh-----chhHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHH
Confidence 322222 247999999888884 8888887642 2233456788999999996 3688999999999999999
Q ss_pred HHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEE
Q 007178 441 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCI 510 (614)
Q Consensus 441 ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~ 510 (614)
+|+|++.+|+++||||||+|||+.+++.+.+.|++++ +|+|||++||+++++..+||++++|+ |++.+.
T Consensus 150 laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~ 219 (255)
T cd03236 150 IAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAY 219 (255)
T ss_pred HHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcc
Confidence 9999999999999999999999999999999999864 58999999999999999999999994 666543
No 323
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-39 Score=370.18 Aligned_cols=205 Identities=23% Similarity=0.390 Sum_probs=179.2
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHh
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 368 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~ 368 (614)
..+|+++|++|.|++ +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+++.
T Consensus 310 ~~~l~~~~l~~~y~~------~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------- 374 (638)
T PRK10636 310 NPLLKMEKVSAGYGD------RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG--------- 374 (638)
T ss_pred CceEEEEeeEEEeCC------eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC---------
Confidence 457999999999973 56999999999999999999999999999999999999999999998741
Q ss_pred hcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHh
Q 007178 369 YTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 446 (614)
Q Consensus 369 ~~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~ 446 (614)
.++||++|+. .+.+..|+.+++.-. .....++++.++++.+++.. +..++++++|||||||||+||+||+
T Consensus 375 -~~igy~~Q~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~L~~~~l~~-~~~~~~~~~LSgGekqRl~La~~l~ 446 (638)
T PRK10636 375 -IKLGYFAQHQLEFLRADESPLQHLARL------APQELEQKLRDYLGGFGFQG-DKVTEETRRFSGGEKARLVLALIVW 446 (638)
T ss_pred -EEEEEecCcchhhCCccchHHHHHHHh------CchhhHHHHHHHHHHcCCCh-hHhcCchhhCCHHHHHHHHHHHHHh
Confidence 2599999974 456667888876421 11223567889999999953 3678999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEE-EEcCHHHHHH
Q 007178 447 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQ-CIGNPKELKA 518 (614)
Q Consensus 447 ~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~-~~g~~~~l~~ 518 (614)
.+|++|||||||+|||+.+++.+.+.|+++ +| |||++|||++++..+|||+++|++|+++ +.|+.++...
T Consensus 447 ~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~g-tvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 447 QRPNLLLLDEPTNHLDLDMRQALTEALIDF-EG-ALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-CC-eEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 999999999999999999999999999887 34 9999999999999999999999999997 7899988743
No 324
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.9e-39 Score=400.31 Aligned_cols=217 Identities=18% Similarity=0.308 Sum_probs=190.4
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 368 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~ 368 (614)
..|+++|++++|+.. ...+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+ ..+.+
T Consensus 1283 g~I~f~nVsf~Y~~~----~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~L 1358 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRED----LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDL 1358 (1522)
T ss_pred CcEEEEEEEEEeCCC----CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHH
Confidence 359999999999742 2469999999999999999999999999999999999999999999999999976 56788
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 439 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 439 (614)
|++||++||++.+|++ |++|||..+. .. .++++.++++..++.+ +........+||||||||+
T Consensus 1359 R~~i~iVpQdp~LF~g-TIr~NLdp~~---~~----sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl 1430 (1522)
T TIGR00957 1359 RFKITIIPQDPVLFSG-SLRMNLDPFS---QY----SDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLV 1430 (1522)
T ss_pred HhcCeEECCCCcccCc-cHHHHcCccc---CC----CHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHH
Confidence 9999999999999997 9999997432 11 2345677777777642 0122334467999999999
Q ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 440 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 440 ~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
+|||||+.+|+|||||||||+||+++.+.+.+.|++..+++|||+++|+++.+.. ||||++|++|++++.|++++|.++
T Consensus 1431 ~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~-~DrIlVld~G~IvE~G~~~eLl~~ 1509 (1522)
T TIGR00957 1431 CLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMD-YTRVIVLDKGEVAEFGAPSNLLQQ 1509 (1522)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999988789999999999999875 999999999999999999999876
No 325
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.9e-39 Score=399.60 Aligned_cols=216 Identities=21% Similarity=0.386 Sum_probs=189.8
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhh
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 369 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~ 369 (614)
.|+++||+++|++. ...+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+ ..+.+|
T Consensus 1308 ~I~f~nVsf~Y~~~----~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR 1383 (1560)
T PTZ00243 1308 SLVFEGVQMRYREG----LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELR 1383 (1560)
T ss_pred eEEEEEEEEEeCCC----CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHH
Confidence 59999999999742 2469999999999999999999999999999999999999999999999999976 567889
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC-----Cccc----ccCCCCChhHHHHHH
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG-----GVAD----KQAGKYSGGMKRRLS 440 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-----~~~~----~~~~~LSgG~kqrl~ 440 (614)
++|||+||++.||+. |++|||..+. +..++++.++++.+++.+. +-.| ....+||||||||++
T Consensus 1384 ~~I~iVpQdp~LF~g-TIreNIdp~~-------~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLa 1455 (1560)
T PTZ00243 1384 RQFSMIPQDPVLFDG-TVRQNVDPFL-------EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMC 1455 (1560)
T ss_pred hcceEECCCCccccc-cHHHHhCccc-------CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHH
Confidence 999999999999997 9999996431 1124568888888887520 0112 334679999999999
Q ss_pred HHHHHhCC-CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 441 VAISLIGN-PKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 441 ia~al~~~-p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
|||||+++ |++||||||||+||+.+.+.+.+.|++..+++|||+++|+++.+.. ||||++|++|++++.|++++|.++
T Consensus 1456 LARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~VvE~Gt~~eLl~~ 1534 (1560)
T PTZ00243 1456 MARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQ-YDKIIVMDHGAVAEMGSPRELVMN 1534 (1560)
T ss_pred HHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence 99999995 8999999999999999999999999988788999999999998875 999999999999999999999865
No 326
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.3e-40 Score=319.86 Aligned_cols=217 Identities=25% Similarity=0.383 Sum_probs=188.7
Q ss_pred CCCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cH-
Q 007178 288 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DM- 365 (614)
Q Consensus 288 ~~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~- 365 (614)
..+.|+++|++.+|++ |++|+|+|++|++||-.+|+||||||||||+++++|.++|++|.+.+.|+...+ +.
T Consensus 28 ~~~li~l~~v~v~r~g------k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~ 101 (257)
T COG1119 28 NEPLIELKNVSVRRNG------KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETI 101 (257)
T ss_pred CcceEEecceEEEECC------EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcch
Confidence 3457999999999984 789999999999999999999999999999999999999999999999998754 33
Q ss_pred HHhhcceEEEcC--CCCCCCCCCHHHHHHH--Hhhh--cC-CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHH
Q 007178 366 DRIYTSMGVCPQ--EDLLWETLTGREHLLF--YGRL--KN-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 438 (614)
Q Consensus 366 ~~~~~~ig~~~Q--~~~l~~~lTv~e~l~~--~~~~--~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqr 438 (614)
.++|++||+|.- +..+.++.+|+|-+.- ++.+ +. ...++..+++..+++.+|+.+ .++++..+||-|||||
T Consensus 102 ~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~--la~r~~~~LS~Ge~rr 179 (257)
T COG1119 102 FELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKH--LADRPFGSLSQGEQRR 179 (257)
T ss_pred HHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhh--hccCchhhcCHhHHHH
Confidence 788999999963 3445556788886642 2222 11 234566778999999999974 8999999999999999
Q ss_pred HHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc---CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcC
Q 007178 439 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK---QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 512 (614)
Q Consensus 439 l~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~---~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~ 512 (614)
+.|||||+.+|++||||||++|||..+|..+.+.+.+.. .+.++|++||+.+|+-...++++.+++|+++..|.
T Consensus 180 vLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 180 VLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 999999999999999999999999999999999998852 37899999999999999999999999999998874
No 327
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=9.3e-40 Score=367.02 Aligned_cols=187 Identities=27% Similarity=0.507 Sum_probs=162.4
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhc
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 370 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~ 370 (614)
.|+++|++++|++ ++.+|+|+||++++||.++|+||||||||||+|+|+|+++|++|+|.++|.|+.+-.+.+|+
T Consensus 334 ~I~~~~vsf~Y~~-----~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~ 408 (529)
T TIGR02868 334 TLELRDLSFGYPG-----SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRR 408 (529)
T ss_pred eEEEEEEEEecCC-----CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHh
Confidence 5999999999974 24599999999999999999999999999999999999999999999999999755667889
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHHH
Q 007178 371 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLSV 441 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~i 441 (614)
++||+||++.+|++ |++||+.++. ++..+++++++++..++.+ +........+||||||||++|
T Consensus 409 ~i~~V~Q~~~lF~~-TI~eNI~~g~------~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiai 481 (529)
T TIGR02868 409 RISVFAQDAHLFDT-TVRDNLRLGR------PDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLAL 481 (529)
T ss_pred heEEEccCcccccc-cHHHHHhccC------CCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHH
Confidence 99999999999997 9999998852 1122456777788777642 011123445799999999999
Q ss_pred HHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCH
Q 007178 442 AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSM 489 (614)
Q Consensus 442 a~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~ 489 (614)
|||++.+|+++|||||||+||+++.+.+.+.+++..+++|+|++||++
T Consensus 482 ARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 482 ARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 999999999999999999999999999999999888899999999984
No 328
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=2.7e-39 Score=364.45 Aligned_cols=201 Identities=22% Similarity=0.345 Sum_probs=175.0
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhh
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 369 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~ 369 (614)
.++++|++++|++ ++.+++|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|+++.+ +....|
T Consensus 322 ~i~~~~v~f~y~~-----~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~ 396 (547)
T PRK10522 322 TLELRNVTFAYQD-----NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYR 396 (547)
T ss_pred eEEEEEEEEEeCC-----CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHh
Confidence 5999999999974 2469999999999999999999999999999999999999999999999999875 456788
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccc-----cCCCCChhHHHHHHHHHH
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADK-----QAGKYSGGMKRRLSVAIS 444 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~~~LSgG~kqrl~ia~a 444 (614)
+++||+||++.+|+. |++|| . ....+++++++++.+++.+ ..+. ...+||||||||++||||
T Consensus 397 ~~i~~v~q~~~lf~~-ti~~n----~------~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~G~~LSgGq~qRl~lARa 463 (547)
T PRK10522 397 KLFSAVFTDFHLFDQ-LLGPE----G------KPANPALVEKWLERLKMAH--KLELEDGRISNLKLSKGQKKRLALLLA 463 (547)
T ss_pred hheEEEecChhHHHH-hhccc----c------CchHHHHHHHHHHHcCCch--hhhccccCCCCCCCCHHHHHHHHHHHH
Confidence 999999999999986 88887 1 1223456788899998863 2221 145899999999999999
Q ss_pred HhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEE
Q 007178 445 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCI 510 (614)
Q Consensus 445 l~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~ 510 (614)
++.+|+++||||||++||+.+++.+++.+.+. + +|+|+|++||+++.+. .||||++|++|++++.
T Consensus 464 l~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 464 LAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFI-HADRLLEMRNGQLSEL 530 (547)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHH-hCCEEEEEECCEEEEe
Confidence 99999999999999999999999999998764 4 5899999999998765 6999999999999876
No 329
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=2.8e-39 Score=364.80 Aligned_cols=197 Identities=23% Similarity=0.297 Sum_probs=174.6
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHh
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 368 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~ 368 (614)
.++++++|++|.|++ ..++++||+|++||++||+||||||||||+|+|+|+++|++|+|.++
T Consensus 338 ~~~l~~~~ls~~~~~-------~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~----------- 399 (590)
T PRK13409 338 ETLVEYPDLTKKLGD-------FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE----------- 399 (590)
T ss_pred ceEEEEcceEEEECC-------EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-----------
Confidence 357999999999963 25999999999999999999999999999999999999999999875
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCC
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 448 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~ 448 (614)
.++||+||+..+++.+||+||+.+..... . ....++++++.+++. +..++++.+|||||||||+||+||+.+
T Consensus 400 -~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~--~---~~~~~~~~L~~l~l~--~~~~~~~~~LSGGe~QRvaiAraL~~~ 471 (590)
T PRK13409 400 -LKISYKPQYIKPDYDGTVEDLLRSITDDL--G---SSYYKSEIIKPLQLE--RLLDKNVKDLSGGELQRVAIAACLSRD 471 (590)
T ss_pred -eeEEEecccccCCCCCcHHHHHHHHhhhc--C---hHHHHHHHHHHCCCH--HHHhCCcccCCHHHHHHHHHHHHHhcC
Confidence 14899999988888999999998753211 1 123568899999996 478999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcC
Q 007178 449 PKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 512 (614)
Q Consensus 449 p~vllLDEPtsgLD~~~~~~i~~~l~~~-~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~ 512 (614)
|+++||||||+|||+.+++.++++|+++ + +|+|||++|||++++..+|||+++|+ |++...|+
T Consensus 472 p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~-~~~~~~g~ 536 (590)
T PRK13409 472 ADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFE-GEPGKHGH 536 (590)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc-Ccceeeee
Confidence 9999999999999999999999999986 3 48999999999999999999999996 47776665
No 330
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.5e-39 Score=310.58 Aligned_cols=221 Identities=25% Similarity=0.349 Sum_probs=185.5
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhh-
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY- 369 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~- 369 (614)
++.++|+.|.|.+... .+++|++++|++|++|+++.++|.||||||||+++|+|-++||+|+|.|+|.|+.+....-|
T Consensus 1 Mi~~~~~~~~f~~g~~-~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA 79 (263)
T COG1101 1 MISLSNATKTFFKGTP-LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRA 79 (263)
T ss_pred CcccccceeeecCCCh-hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHh
Confidence 3567889998865432 25889999999999999999999999999999999999999999999999999976543333
Q ss_pred cceEEEcCCC--CCCCCCCHHHHHHHHhhh---cCCCc---hhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHH
Q 007178 370 TSMGVCPQED--LLWETLTGREHLLFYGRL---KNLKG---PALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSV 441 (614)
Q Consensus 370 ~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~---~~~~~---~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~i 441 (614)
..++-|+|+| ..++.||++||+.+.... +|... ...++...+.++.+++.-++..+.+++-|||||||-+++
T Consensus 80 ~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL 159 (263)
T COG1101 80 NLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSL 159 (263)
T ss_pred hHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHH
Confidence 4578899997 568999999999986432 23322 233344555666666543357889999999999999999
Q ss_pred HHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcC
Q 007178 442 AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 512 (614)
Q Consensus 442 a~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~ 512 (614)
++|.++.|++++|||-|++|||.....+++.=.+. + .+.|.+|+||+|+.|..+.+|.++|++|+|+.+-+
T Consensus 160 ~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~ 232 (263)
T COG1101 160 LMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVT 232 (263)
T ss_pred HHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEcc
Confidence 99999999999999999999999999999998884 3 47899999999999999999999999999997643
No 331
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.8e-39 Score=396.92 Aligned_cols=210 Identities=22% Similarity=0.389 Sum_probs=176.5
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEE-cCeeCCC-cHHHh
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV-QGLDIRT-DMDRI 368 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i-~G~~i~~-~~~~~ 368 (614)
.|+++||++.|+++. ++.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+ +|+++.. +...+
T Consensus 382 ~I~~~nVsf~Y~~~~---~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~l 458 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRK---DVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWW 458 (1466)
T ss_pred cEEEEEEEEEcCCCC---CCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHH
Confidence 599999999998531 357999999999999999999999999999999999999999999999 5688754 45567
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhh-cC---------C--------------------------------------
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRL-KN---------L-------------------------------------- 400 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~-~~---------~-------------------------------------- 400 (614)
|++|||+||++.+|+. |++||+.++... ++ .
T Consensus 459 r~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 537 (1466)
T PTZ00265 459 RSKIGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEM 537 (1466)
T ss_pred HHhccEecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhc
Confidence 8899999999999985 999999985310 00 0
Q ss_pred ---CchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHH
Q 007178 401 ---KGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNN 468 (614)
Q Consensus 401 ---~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~ 468 (614)
.....++++.++++.+++.+ +...++.+.+||||||||++|||||+.+|++|||||||++||+.+++.
T Consensus 538 ~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~ 617 (1466)
T PTZ00265 538 RKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYL 617 (1466)
T ss_pred ccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHH
Confidence 00112356777888887642 011356788999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc--CCceEEEEcCCHHHHHhhCCEEEEEeCC
Q 007178 469 LWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDG 505 (614)
Q Consensus 469 i~~~l~~~~--~g~tIil~TH~~~e~~~l~dri~il~~G 505 (614)
+.+.|++.+ +|+|+|++||+++.++ .||||++|++|
T Consensus 618 i~~~L~~~~~~~g~TvIiIsHrls~i~-~aD~Iivl~~g 655 (1466)
T PTZ00265 618 VQKTINNLKGNENRITIIIAHRLSTIR-YANTIFVLSNR 655 (1466)
T ss_pred HHHHHHHHhhcCCCEEEEEeCCHHHHH-hCCEEEEEeCC
Confidence 999999874 5899999999999985 79999999986
No 332
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=4.2e-39 Score=363.31 Aligned_cols=207 Identities=18% Similarity=0.275 Sum_probs=176.5
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 368 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~ 368 (614)
..|+++|++++|++.++ .++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .....
T Consensus 336 ~~i~~~~v~f~y~~~~~-~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~ 414 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEG-SEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDY 414 (555)
T ss_pred ceEEEEEEEEEeCCCCC-CcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHH
Confidence 35999999999975211 12469999999999999999999999999999999999999999999999999975 45667
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccc------cCCCCChhHHHHHHHH
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADK------QAGKYSGGMKRRLSVA 442 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~------~~~~LSgG~kqrl~ia 442 (614)
|+.++|++|++.+|++ |+++|.. ++..+++++++++.+++.+ ..++ ...+||||||||++||
T Consensus 415 ~~~i~~v~q~~~lf~~-ti~~n~~---------~~~~~~~~~~~~~~~~l~~--~~~~lp~g~~t~~~LSgGq~qRlala 482 (555)
T TIGR01194 415 RDLFSAIFADFHLFDD-LIGPDEG---------EHASLDNAQQYLQRLEIAD--KVKIEDGGFSTTTALSTGQQKRLALI 482 (555)
T ss_pred HhhCcEEccChhhhhh-hhhcccc---------cchhHHHHHHHHHHcCCch--hhcccccccCCcccCCHHHHHHHHHH
Confidence 8899999999999986 8888841 1234566888999999863 3222 2367999999999999
Q ss_pred HHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHH-Hh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEE
Q 007178 443 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVK-RA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCI 510 (614)
Q Consensus 443 ~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~-~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~ 510 (614)
||++.+|+++||||||++||+.+++.+.+.+. .. .+|+|+|++||+++.++ .||+|++|++|++++.
T Consensus 483 Rall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~-~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 483 CAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFE-LADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEEEe
Confidence 99999999999999999999999999998664 44 46899999999998765 7999999999999865
No 333
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=5.9e-39 Score=367.02 Aligned_cols=207 Identities=21% Similarity=0.288 Sum_probs=178.9
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHh
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 368 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~ 368 (614)
..+++++|++|.|++ +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+ |.++
T Consensus 317 ~~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~------- 382 (635)
T PRK11147 317 KIVFEMENVNYQIDG------KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL------- 382 (635)
T ss_pred CceEEEeeeEEEECC------eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc-------
Confidence 457999999999973 56999999999999999999999999999999999999999999998 5432
Q ss_pred hcceEEEcCCC-CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhC
Q 007178 369 YTSMGVCPQED-LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 447 (614)
Q Consensus 369 ~~~ig~~~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~ 447 (614)
.|||++|+. .+++.+||.||+.+........ ....++.++++.+++.. +..++++++|||||||||+||+||+.
T Consensus 383 --~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGekqRl~la~al~~ 457 (635)
T PRK11147 383 --EVAYFDQHRAELDPEKTVMDNLAEGKQEVMVN--GRPRHVLGYLQDFLFHP-KRAMTPVKALSGGERNRLLLARLFLK 457 (635)
T ss_pred --EEEEEeCcccccCCCCCHHHHHHhhccccccc--chHHHHHHHHHhcCCCH-HHHhChhhhCCHHHHHHHHHHHHHhc
Confidence 499999985 6889999999998753211111 12356788999999953 35789999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEe-CCEEEE-EcCHHHH
Q 007178 448 NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV-DGSLQC-IGNPKEL 516 (614)
Q Consensus 448 ~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~-~G~l~~-~g~~~~l 516 (614)
+|++|||||||+|||+.+++.+.+.+++. +.|||++|||++++..+|||+++|+ +|++.. .|+.++-
T Consensus 458 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 458 PSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 99999999999999999999999999876 3599999999999999999999998 899876 5666665
No 334
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=4.4e-39 Score=331.01 Aligned_cols=236 Identities=24% Similarity=0.355 Sum_probs=207.6
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CccEEEEcCeeCCC
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT 363 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~sG~i~i~G~~i~~ 363 (614)
.+.+.++||+..|+... ..+.|++++||++++||.+||+|.+|||||-+.+.+.|+++. -+|+|.++|+|+-.
T Consensus 4 ~~lL~v~nLsV~f~~~~--~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~ 81 (534)
T COG4172 4 MPLLSIRNLSVAFHQEG--GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLA 81 (534)
T ss_pred CcceeeeccEEEEecCC--cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhc
Confidence 35699999999997543 357899999999999999999999999999999999999864 37899999999854
Q ss_pred c----HHHhh-cceEEEcCCC--CCCCCCCHHHHHHHHhhh-cCCCchhHHHHHHHHHHHcCCCCC-CcccccCCCCChh
Q 007178 364 D----MDRIY-TSMGVCPQED--LLWETLTGREHLLFYGRL-KNLKGPALTQAVEESLKSVNLFHG-GVADKQAGKYSGG 434 (614)
Q Consensus 364 ~----~~~~~-~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~-~~~~~~~~~LSgG 434 (614)
. ...+| .+|+++||+| .|.|-.|+...+.-..++ +|.++++.++++.++|+.+|+.+. ...++++++||||
T Consensus 82 ~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGG 161 (534)
T COG4172 82 ASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGG 161 (534)
T ss_pred CCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcc
Confidence 2 23344 3699999997 578888998888776665 467888999999999999999752 3458899999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcC
Q 007178 435 MKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 512 (614)
Q Consensus 435 ~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~--~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~ 512 (614)
||||+.||+||+.+|++||.||||++||..-+.++.++|++++ -|.+++++|||+.-+..+||||++|.+|++++.|+
T Consensus 162 qRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~ 241 (534)
T COG4172 162 QRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGT 241 (534)
T ss_pred hhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCc
Confidence 9999999999999999999999999999999999999999974 39999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEE
Q 007178 513 PKELKARYGGSYVF 526 (614)
Q Consensus 513 ~~~l~~~~~~~~~l 526 (614)
.+.+.....+.|+-
T Consensus 242 t~~lF~~PqHpYTr 255 (534)
T COG4172 242 TETLFAAPQHPYTR 255 (534)
T ss_pred HHHHhhCCCChHHH
Confidence 99998887776653
No 335
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=1.1e-38 Score=297.94 Aligned_cols=144 Identities=31% Similarity=0.500 Sum_probs=135.9
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcc
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 371 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ 371 (614)
++++|++++|++ ..+++|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|+ +.
T Consensus 1 l~~~~l~~~~~~------~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~----------~~ 64 (144)
T cd03221 1 IELENLSKTYGG------KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST----------VK 64 (144)
T ss_pred CEEEEEEEEECC------ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe----------EE
Confidence 468999999973 46999999999999999999999999999999999999999999999984 46
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCE
Q 007178 372 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 451 (614)
Q Consensus 372 ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~v 451 (614)
++|+|| ||+|||||++|||||+.+|++
T Consensus 65 i~~~~~-----------------------------------------------------lS~G~~~rv~laral~~~p~i 91 (144)
T cd03221 65 IGYFEQ-----------------------------------------------------LSGGEKMRLALAKLLLENPNL 91 (144)
T ss_pred EEEEcc-----------------------------------------------------CCHHHHHHHHHHHHHhcCCCE
Confidence 899999 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCE
Q 007178 452 VYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGS 506 (614)
Q Consensus 452 llLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~ 506 (614)
++|||||+|||+.+++.+++.++++ ++||+++||+++++..+|||+++|++||
T Consensus 92 lllDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 92 LLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999876 4799999999999999999999999986
No 336
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-38 Score=361.96 Aligned_cols=206 Identities=19% Similarity=0.287 Sum_probs=169.6
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhc
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 370 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~ 370 (614)
+|.++||+|+|++ +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|..
T Consensus 1 ~i~i~nls~~~g~------~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~---------- 64 (638)
T PRK10636 1 MIVFSSLQIRRGV------RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW---------- 64 (638)
T ss_pred CEEEEEEEEEeCC------ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC----------
Confidence 4789999999974 579999999999999999999999999999999999999999999998842
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHH-----------------------Hhhhc----CCCchhHHHHHHHHHHHcCCCCCCc
Q 007178 371 SMGVCPQEDLLWETLTGREHLLF-----------------------YGRLK----NLKGPALTQAVEESLKSVNLFHGGV 423 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~l~~-----------------------~~~~~----~~~~~~~~~~~~~~l~~~~L~~~~~ 423 (614)
.+||++|++..+. .|+.+.+.- +..+. .....+.+++++++++.+|+.+ ..
T Consensus 65 ~i~~~~q~~~~~~-~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~-~~ 142 (638)
T PRK10636 65 QLAWVNQETPALP-QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSN-EQ 142 (638)
T ss_pred EEEEEecCCCCCC-CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCc-hh
Confidence 2778877543322 354443321 11111 1112234567889999999962 35
Q ss_pred ccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEe
Q 007178 424 ADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV 503 (614)
Q Consensus 424 ~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~ 503 (614)
.++++.+||||||||++||+||+.+|++|||||||+|||+.+++.+.+.|++. +.|||++|||++++..+|||+++|+
T Consensus 143 ~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~ 220 (638)
T PRK10636 143 LERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHIE 220 (638)
T ss_pred hcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEe
Confidence 79999999999999999999999999999999999999999999999999876 4699999999999999999999999
Q ss_pred CCEEE-EEcCHHHH
Q 007178 504 DGSLQ-CIGNPKEL 516 (614)
Q Consensus 504 ~G~l~-~~g~~~~l 516 (614)
+|++. ..|+.+..
T Consensus 221 ~G~i~~~~g~~~~~ 234 (638)
T PRK10636 221 QQSLFEYTGNYSSF 234 (638)
T ss_pred CCEEEEecCCHHHH
Confidence 99996 46765543
No 337
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=2.8e-38 Score=362.82 Aligned_cols=206 Identities=24% Similarity=0.361 Sum_probs=175.5
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 369 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~ 369 (614)
++++++|+++.|++ ++.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+++ +
T Consensus 507 ~~L~~~~ls~~y~~-----~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~----------~ 571 (718)
T PLN03073 507 PIISFSDASFGYPG-----GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA----------K 571 (718)
T ss_pred ceEEEEeeEEEeCC-----CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC----------c
Confidence 57999999999963 24699999999999999999999999999999999999999999999865 2
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHh-h-hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhC
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYG-R-LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 447 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~-~-~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~ 447 (614)
.++||+||++ .+.+++.++..+.. . ..+. .+++++++++.+++.+ ...++++.+||||||||++||+|++.
T Consensus 572 ~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~~~----~~~~i~~~L~~~gl~~-~~~~~~~~~LSgGqkqRvaLAraL~~ 644 (718)
T PLN03073 572 VRMAVFSQHH--VDGLDLSSNPLLYMMRCFPGV----PEQKLRAHLGSFGVTG-NLALQPMYTLSGGQKSRVAFAKITFK 644 (718)
T ss_pred eeEEEEeccc--cccCCcchhHHHHHHHhcCCC----CHHHHHHHHHHCCCCh-HHhcCCccccCHHHHHHHHHHHHHhc
Confidence 3599999985 34556666644322 1 1121 2456788999999963 36789999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEE-EEcCHHHHHHh
Q 007178 448 NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQ-CIGNPKELKAR 519 (614)
Q Consensus 448 ~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~-~~g~~~~l~~~ 519 (614)
+|++|||||||+|||+.+++.+.+.+.+. +| |||++|||++++..+|||+++|++|+++ ..|+.++.++.
T Consensus 645 ~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~g-tvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~~~ 715 (718)
T PLN03073 645 KPHILLLDEPSNHLDLDAVEALIQGLVLF-QG-GVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYKKT 715 (718)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHc-CC-EEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHHHH
Confidence 99999999999999999999999888765 34 9999999999999999999999999998 67888876553
No 338
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.1e-38 Score=389.59 Aligned_cols=210 Identities=19% Similarity=0.269 Sum_probs=182.9
Q ss_pred ccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCC----CCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCC
Q 007178 309 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT----RTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWET 384 (614)
Q Consensus 309 ~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~----~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~ 384 (614)
++.+|+|+|+++++||+++|+||||||||||+|+|+|+. +|++|+|.++|+++.....+.|+.++|++|++.+++.
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 467999999999999999999999999999999999986 5799999999998754334456779999999999999
Q ss_pred CCHHHHHHHHhhhcC-------CCchhHHHH-HHHHHHHcCCCCCCccccc-----CCCCChhHHHHHHHHHHHhCCCCE
Q 007178 385 LTGREHLLFYGRLKN-------LKGPALTQA-VEESLKSVNLFHGGVADKQ-----AGKYSGGMKRRLSVAISLIGNPKV 451 (614)
Q Consensus 385 lTv~e~l~~~~~~~~-------~~~~~~~~~-~~~~l~~~~L~~~~~~~~~-----~~~LSgG~kqrl~ia~al~~~p~v 451 (614)
+||+||+.|.++++. .++++..++ ++++++.+||.+ .+|++ ++.|||||||||+||+||+.+|++
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~--~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~v 230 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSH--TRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKI 230 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCccc--ccCceeCCCcCCCCCcccchHHHHHHHHHhCCCE
Confidence 999999999876642 222332333 467899999973 55554 567999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCH-HHHHhhCCEEEEEeCCEEEEEcCHHHHHHhc
Q 007178 452 VYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSM-EEAEALCDRLGIFVDGSLQCIGNPKELKARY 520 (614)
Q Consensus 452 llLDEPtsgLD~~~~~~i~~~l~~~-~-~g~tIil~TH~~-~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 520 (614)
++|||||+|||+.++.++.+.|+++ + .|+|||+++|++ +++.+++|++++|++|+++..|+++++++.+
T Consensus 231 lllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF 302 (1394)
T TIGR00956 231 QCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYF 302 (1394)
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHH
Confidence 9999999999999999999999986 3 489999999996 7899999999999999999999999987765
No 339
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.2e-38 Score=296.87 Aligned_cols=228 Identities=25% Similarity=0.344 Sum_probs=201.1
Q ss_pred eEEEEeEEEEcCCCCC---CCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc-HH
Q 007178 291 AIISDNLRKIYPGRDG---NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MD 366 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~---~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~-~~ 366 (614)
.++++||+|.|..+.+ .....|++.|||++++|+..|++|.||||||||.|||+|+++||+|+|.+||+.+... ..
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~ 83 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYS 83 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchH
Confidence 4788999999865422 2246799999999999999999999999999999999999999999999999988643 33
Q ss_pred HhhcceEEEcCCC--CCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 007178 367 RIYTSMGVCPQED--LLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 443 (614)
Q Consensus 367 ~~~~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~ 443 (614)
...+.|-++|||+ .+.|.+.+.+-|..+.++. .+..++.++++.+.|+.+||.+ ++++-++..||-||||||++||
T Consensus 84 ~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~P-dhan~~~~~la~~QKQRVaLAR 162 (267)
T COG4167 84 FRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLP-DHANYYPHMLAPGQKQRVALAR 162 (267)
T ss_pred hhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCc-cccccchhhcCchhHHHHHHHH
Confidence 3336799999997 4788888888888777654 3455667789999999999986 7999999999999999999999
Q ss_pred HHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 444 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 444 al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~--~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
||+.+|+++|.||..++||...|.++.++..++ +.|.+-|.++.++..+..++|.|++|+.|++++.|++.++...
T Consensus 163 ALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~ 240 (267)
T COG4167 163 ALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLAS 240 (267)
T ss_pred HHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcC
Confidence 999999999999999999999999999999876 3599999999999999999999999999999999999988664
No 340
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=3.3e-38 Score=388.26 Aligned_cols=216 Identities=22% Similarity=0.363 Sum_probs=188.8
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 368 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~ 368 (614)
..|+++||+++|+.. .+.+|+|+||+|++||.+||+|++|||||||+++|.|+++ ++|+|.++|.|+.+ ..+.+
T Consensus 1216 g~I~f~nVs~~Y~~~----~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~l 1290 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTEA----GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTW 1290 (1490)
T ss_pred CeEEEEEEEEEeCCC----CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHH
Confidence 369999999999742 3579999999999999999999999999999999999997 79999999999976 56778
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC-----Ccccc----cCCCCChhHHHHH
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG-----GVADK----QAGKYSGGMKRRL 439 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-----~~~~~----~~~~LSgG~kqrl 439 (614)
|++++|+||++.+|++ |+||||..+. +..++++.++++.++|.+. +-.|. ...+||||||||+
T Consensus 1291 R~~is~IpQdp~LF~G-TIR~NLdp~~-------~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL 1362 (1490)
T TIGR01271 1291 RKAFGVIPQKVFIFSG-TFRKNLDPYE-------QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLM 1362 (1490)
T ss_pred HhceEEEeCCCccCcc-CHHHHhCccc-------CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHH
Confidence 9999999999999997 9999996532 1124567888888887420 01122 2347999999999
Q ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 440 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 440 ~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
+|||||+++|+|||||||||+||+.+.+.+.+.|++..+++|||++||+++.+.. ||||++|++|++++.|++++|.++
T Consensus 1363 ~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-~DrIlvL~~G~ivE~g~p~~Ll~~ 1441 (1490)
T TIGR01271 1363 CLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLE-CQQFLVIEGSSVKQYDSIQKLLNE 1441 (1490)
T ss_pred HHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEEEEeCCHHHHHcC
Confidence 9999999999999999999999999999999999988788999999999998875 999999999999999999999763
No 341
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-39 Score=337.18 Aligned_cols=221 Identities=24% Similarity=0.444 Sum_probs=189.8
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 368 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~ 368 (614)
..|+++|+++.|.. ++++|+|+||++.+|+.+||+||+||||||++|+|-.++.-++|.|.+||+|++. ....+
T Consensus 536 G~i~fsnvtF~Y~p-----~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SL 610 (790)
T KOG0056|consen 536 GKIEFSNVTFAYDP-----GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSL 610 (790)
T ss_pred CeEEEEEeEEecCC-----CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHH
Confidence 36999999999974 5889999999999999999999999999999999999999999999999999976 45678
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHH-------cCCCCCCcc---cccCCCCChhHHHH
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKS-------VNLFHGGVA---DKQAGKYSGGMKRR 438 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~-------~~L~~~~~~---~~~~~~LSgG~kqr 438 (614)
|++||++|||..||++ |+..|+.+. +.. -+.++ +.++.+. ++..+ .+. ..+.-.||||||||
T Consensus 611 Rs~IGVVPQDtvLFNd-TI~yNIrya-k~~-Asnee----vyaAAkAA~IHdrIl~fPe-gY~t~VGERGLkLSGGEKQR 682 (790)
T KOG0056|consen 611 RSSIGVVPQDTVLFND-TILYNIRYA-KPS-ASNEE----VYAAAKAAQIHDRILQFPE-GYNTRVGERGLKLSGGEKQR 682 (790)
T ss_pred HHhcCcccCcceeecc-eeeeheeec-CCC-CChHH----HHHHHHHhhHHHHHhcCch-hhhhhhhhcccccCCcchhh
Confidence 9999999999999998 999999864 321 12222 2233222 34432 222 33444799999999
Q ss_pred HHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 439 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 439 l~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
|+|||+++.+|.+++|||.||+||....|.+...+.++..|||-|++.|.+..+-. ||.|+++++|+|++.|+.+||..
T Consensus 683 VAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivn-AD~ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 683 VAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVN-ADLILVISNGRIVERGRHEELLK 761 (790)
T ss_pred HHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheec-ccEEEEEeCCeEeecCcHHHHHh
Confidence 99999999999999999999999999999999999999899999999999999875 99999999999999999999999
Q ss_pred hcCCcE
Q 007178 519 RYGGSY 524 (614)
Q Consensus 519 ~~~~~~ 524 (614)
+-|..|
T Consensus 762 rdgG~Y 767 (790)
T KOG0056|consen 762 RDGGAY 767 (790)
T ss_pred ccCCcH
Confidence 866555
No 342
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-37 Score=299.28 Aligned_cols=224 Identities=23% Similarity=0.373 Sum_probs=197.6
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCC--CCCccEEEEcCeeCCC--cH
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT--RTTSGTAYVQGLDIRT--DM 365 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~--~p~sG~i~i~G~~i~~--~~ 365 (614)
.+++++||+.+-.+ ++.+|+++||+|++||+.+|+||||||||||.++|+|.- ++|+|+|.++|+|+.. ..
T Consensus 2 ~~L~I~dLhv~v~~-----~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ 76 (251)
T COG0396 2 MMLEIKDLHVEVEG-----KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPD 76 (251)
T ss_pred ceeEEeeeEEEecC-----chhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHh
Confidence 36899999999864 258999999999999999999999999999999999974 7899999999999975 45
Q ss_pred HHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCC---chhHHHHHHHHHHHcCCCCCCcccccCC-CCChhHHHHHHH
Q 007178 366 DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK---GPALTQAVEESLKSVNLFHGGVADKQAG-KYSGGMKRRLSV 441 (614)
Q Consensus 366 ~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~---~~~~~~~~~~~l~~~~L~~~~~~~~~~~-~LSgG~kqrl~i 441 (614)
+++|..|...+|.|.=+|..|+.+.|......+... ..+..+++++.++.+++.+ .++++.+. .+|||||+|..|
T Consensus 77 ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~-~~l~R~vN~GFSGGEkKR~Ei 155 (251)
T COG0396 77 ERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDE-EFLERYVNEGFSGGEKKRNEI 155 (251)
T ss_pred HHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCH-HHhhcccCCCcCcchHHHHHH
Confidence 678889999999999999999999998766543211 2466788999999999985 68888886 699999999999
Q ss_pred HHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhh-CCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 442 AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEAL-CDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 442 a~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l-~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
+.+++.+|++.|||||-||||..+-+.+.+.+++++ +|++++++||+-..++.+ .|++.+|.+|+|++.|.+ ++..+
T Consensus 156 lQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el~~~ 234 (251)
T COG0396 156 LQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-ELAEE 234 (251)
T ss_pred HHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HHHHH
Confidence 999999999999999999999999999999999975 699999999998877655 399999999999999999 66554
Q ss_pred c
Q 007178 520 Y 520 (614)
Q Consensus 520 ~ 520 (614)
+
T Consensus 235 l 235 (251)
T COG0396 235 L 235 (251)
T ss_pred H
Confidence 3
No 343
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=2.1e-37 Score=354.31 Aligned_cols=203 Identities=22% Similarity=0.249 Sum_probs=167.3
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhc
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 370 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~ 370 (614)
+|+++|++|.|++ +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|..
T Consensus 3 ~l~i~~ls~~~~~------~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~---------- 66 (635)
T PRK11147 3 LISIHGAWLSFSD------APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL---------- 66 (635)
T ss_pred EEEEeeEEEEeCC------ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC----------
Confidence 6899999999973 569999999999999999999999999999999999999999999998731
Q ss_pred ceEEEcCCCCCCCCCCHHHH------------------------------HHHHhhhc----CCCchhHHHHHHHHHHHc
Q 007178 371 SMGVCPQEDLLWETLTGREH------------------------------LLFYGRLK----NLKGPALTQAVEESLKSV 416 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~------------------------------l~~~~~~~----~~~~~~~~~~~~~~l~~~ 416 (614)
.+++++|++......++.++ +..+..+. .....+.+++++++++.+
T Consensus 67 ~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 146 (635)
T PRK11147 67 IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL 146 (635)
T ss_pred EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC
Confidence 15666665432222344443 22222111 111123456788999999
Q ss_pred CCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhC
Q 007178 417 NLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALC 496 (614)
Q Consensus 417 ~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~ 496 (614)
|+. .++++.+|||||||||+||+||+.+|++|||||||+|||+.+++.+.+.|++++ .|||++|||.+++..+|
T Consensus 147 gl~----~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~--~tvlivsHd~~~l~~~~ 220 (635)
T PRK11147 147 GLD----PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ--GSIIFISHDRSFIRNMA 220 (635)
T ss_pred CCC----CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHhc
Confidence 995 378999999999999999999999999999999999999999999999998874 59999999999999999
Q ss_pred CEEEEEeCCEEEE-EcCHHH
Q 007178 497 DRLGIFVDGSLQC-IGNPKE 515 (614)
Q Consensus 497 dri~il~~G~l~~-~g~~~~ 515 (614)
|+|++|++|+++. .|+.++
T Consensus 221 d~i~~L~~G~i~~~~g~~~~ 240 (635)
T PRK11147 221 TRIVDLDRGKLVSYPGNYDQ 240 (635)
T ss_pred CeEEEEECCEEEEecCCHHH
Confidence 9999999999974 577654
No 344
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=8.7e-38 Score=353.43 Aligned_cols=225 Identities=31% Similarity=0.478 Sum_probs=200.5
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC---CccEEEEcCeeCCCcHHH
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT---TSGTAYVQGLDIRTDMDR 367 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p---~sG~i~i~G~~i~~~~~~ 367 (614)
.+..+|++..-++..+ +.+++|+|||.++++||+.||+||+|||||||+++|+|-... .+|+|.+||+.. ..+.
T Consensus 25 ~~~~~~~~~~~~~~~~-~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~--~~~~ 101 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSK-KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPR--DSRS 101 (613)
T ss_pred eeEEEEEEEEecCCCC-ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccC--chhh
Confidence 4677888877765322 357899999999999999999999999999999999998864 799999999654 3456
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC---CchhHHHHHHHHHHHcCCCCCCcccccCC-----CCChhHHHHH
Q 007178 368 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL---KGPALTQAVEESLKSVNLFHGGVADKQAG-----KYSGGMKRRL 439 (614)
Q Consensus 368 ~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~---~~~~~~~~~~~~l~~~~L~~~~~~~~~~~-----~LSgG~kqrl 439 (614)
.++..||+.|+|.+++.+||+|++.|.+.++-. +.++.+++++++++.+||. ..+|..++ .+||||||||
T Consensus 102 ~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~--~~~~t~ig~~~~rgiSGGErkRv 179 (613)
T KOG0061|consen 102 FRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLE--KCADTLIGNPGIRGLSGGERKRV 179 (613)
T ss_pred hhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCh--hhccceecCCCCCccccchhhHH
Confidence 778899999999999999999999999988643 4577889999999999997 47888886 5999999999
Q ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHH-HHHhhCCEEEEEeCCEEEEEcCHHHHH
Q 007178 440 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSME-EAEALCDRLGIFVDGSLQCIGNPKELK 517 (614)
Q Consensus 440 ~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~-e~~~l~dri~il~~G~l~~~g~~~~l~ 517 (614)
+||.-|+.||++++|||||+|||..+..++.+.|+++ ++|+|||+|-|++. ++-.+.|++++|.+|+.+..|+++++.
T Consensus 180 sia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~ 259 (613)
T KOG0061|consen 180 SIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELL 259 (613)
T ss_pred HHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHH
Confidence 9999999999999999999999999999999999995 56999999999995 888899999999999999999999887
Q ss_pred Hhc
Q 007178 518 ARY 520 (614)
Q Consensus 518 ~~~ 520 (614)
+-+
T Consensus 260 ~ff 262 (613)
T KOG0061|consen 260 EFF 262 (613)
T ss_pred HHH
Confidence 655
No 345
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=8.9e-38 Score=300.83 Aligned_cols=146 Identities=27% Similarity=0.373 Sum_probs=133.9
Q ss_pred EeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEE
Q 007178 295 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGV 374 (614)
Q Consensus 295 ~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~ 374 (614)
.|++|.|++ +.++++. +++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ++|
T Consensus 4 ~~l~~~~~~------~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----------i~~ 65 (177)
T cd03222 4 PDCVKRYGV------FFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT-----------PVY 65 (177)
T ss_pred CCeEEEECC------EEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE-----------EEE
Confidence 589999973 5688884 9999999999999999999999999999999999999999853 789
Q ss_pred EcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEE
Q 007178 375 CPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYM 454 (614)
Q Consensus 375 ~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllL 454 (614)
+||+.. ||||||||+++|||++.+|++++|
T Consensus 66 ~~q~~~--------------------------------------------------LSgGq~qrv~laral~~~p~lllL 95 (177)
T cd03222 66 KPQYID--------------------------------------------------LSGGELQRVAIAAALLRNATFYLF 95 (177)
T ss_pred EcccCC--------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 998642 999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHhhCCEEEEEeCCEEE
Q 007178 455 DEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQ 508 (614)
Q Consensus 455 DEPtsgLD~~~~~~i~~~l~~~-~~-g~tIil~TH~~~e~~~l~dri~il~~G~l~ 508 (614)
||||+|||+.+++.+.+.+++. ++ ++|||++||++++++.+||++++|+++..+
T Consensus 96 DEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~ 151 (177)
T cd03222 96 DEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGV 151 (177)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCcc
Confidence 9999999999999999999886 45 489999999999999999999999987554
No 346
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=5.2e-38 Score=382.72 Aligned_cols=210 Identities=21% Similarity=0.291 Sum_probs=182.2
Q ss_pred ccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCC
Q 007178 309 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT---SGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETL 385 (614)
Q Consensus 309 ~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~---sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~l 385 (614)
++.+|+|+|+.+++||+++|+||||||||||+|+|+|.++|+ +|+|.++|+++.... .++.+||++|++.+++.+
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~--~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV--PRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc--ccceeEEecccccCCCcC
Confidence 367999999999999999999999999999999999999998 999999999875321 257899999999999999
Q ss_pred CHHHHHHHHhhhcCCC----------chhH------------------------HHHHHHHHHHcCCCCC---CcccccC
Q 007178 386 TGREHLLFYGRLKNLK----------GPAL------------------------TQAVEESLKSVNLFHG---GVADKQA 428 (614)
Q Consensus 386 Tv~e~l~~~~~~~~~~----------~~~~------------------------~~~~~~~l~~~~L~~~---~~~~~~~ 428 (614)
||+|++.|.++.++.. +++. +..++++++.+||.+. ...|+.+
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 9999999988765321 1110 1135778999999631 0236677
Q ss_pred CCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCH-HHHHhhCCEEEEEeCC
Q 007178 429 GKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSM-EEAEALCDRLGIFVDG 505 (614)
Q Consensus 429 ~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~-~g~tIil~TH~~-~e~~~l~dri~il~~G 505 (614)
+.|||||||||+||++|+++|++++|||||+|||+.++.++.+.|++. + .|+|||+++|+. +++..+||+|++|++|
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G 414 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG 414 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence 899999999999999999999999999999999999999999999986 3 489999999996 6899999999999999
Q ss_pred EEEEEcCHHHHHHhc
Q 007178 506 SLQCIGNPKELKARY 520 (614)
Q Consensus 506 ~l~~~g~~~~l~~~~ 520 (614)
+++..|+.+++++.+
T Consensus 415 ~ivy~G~~~~~~~yF 429 (1470)
T PLN03140 415 QIVYQGPRDHILEFF 429 (1470)
T ss_pred eEEEeCCHHHHHHHH
Confidence 999999999998655
No 347
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=1.3e-37 Score=328.79 Aligned_cols=225 Identities=27% Similarity=0.484 Sum_probs=184.8
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHH
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDR 367 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~ 367 (614)
...+.+++++..=++. ++++|+|+||++.+||.+||+||+|||||||.|+|.|..+|++|.|++||-|+.. +.+.
T Consensus 332 ~g~L~Ve~l~~~PPg~----~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~ 407 (580)
T COG4618 332 QGALSVERLTAAPPGQ----KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQ 407 (580)
T ss_pred CceeeEeeeeecCCCC----CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHH
Confidence 4469999999866543 5789999999999999999999999999999999999999999999999999975 6667
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHH-----HHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHH
Q 007178 368 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALT-----QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 442 (614)
Q Consensus 368 ~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia 442 (614)
.=++|||+||+-.||+. ||.||+.=+.. ..+.+..- ..+.|++-.+--.-+.....-...||||||||+++|
T Consensus 408 lG~hiGYLPQdVeLF~G-TIaeNIaRf~~--~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLA 484 (580)
T COG4618 408 LGRHIGYLPQDVELFDG-TIAENIARFGE--EADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALA 484 (580)
T ss_pred hccccCcCcccceecCC-cHHHHHHhccc--cCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHH
Confidence 77899999999999998 99999964321 11111111 123333332221101122333457999999999999
Q ss_pred HHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHhcC
Q 007178 443 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG 521 (614)
Q Consensus 443 ~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~ 521 (614)
|||.++|.+++||||-|+||....+.+.+.|.+.+ +|.|+|++||...... .+|+|.+|++|++...|+.+|+.++..
T Consensus 485 RAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~-~~Dkilvl~~G~~~~FG~r~eVLa~~~ 563 (580)
T COG4618 485 RALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALA-SVDKILVLQDGRIAAFGPREEVLAKVL 563 (580)
T ss_pred HHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHh-hcceeeeecCChHHhcCCHHHHHHHhc
Confidence 99999999999999999999999999999999875 7999999999998765 699999999999999999999988754
No 348
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=5.8e-38 Score=354.09 Aligned_cols=193 Identities=23% Similarity=0.345 Sum_probs=164.9
Q ss_pred eEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEE-----------EcCeeCCCc
Q 007178 296 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY-----------VQGLDIRTD 364 (614)
Q Consensus 296 ~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~-----------i~G~~i~~~ 364 (614)
+++++|++ +..+|++++ .+++||++||+||||||||||+|+|+|+++|++|+|. ++|+++...
T Consensus 78 ~~~~~yg~-----~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~ 151 (590)
T PRK13409 78 EPVHRYGV-----NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNY 151 (590)
T ss_pred CceEEecC-----CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHH
Confidence 47889974 246999999 9999999999999999999999999999999999997 899887542
Q ss_pred HHHh---hcceEEEcCCCCCCCC---CCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHH
Q 007178 365 MDRI---YTSMGVCPQEDLLWET---LTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 438 (614)
Q Consensus 365 ~~~~---~~~ig~~~Q~~~l~~~---lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqr 438 (614)
..+. +.++++.+|.....+. .||+|++... +.+++++++++.++|. ...++++.+||||||||
T Consensus 152 ~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---------~~~~~~~~~l~~l~l~--~~~~~~~~~LSgGe~qr 220 (590)
T PRK13409 152 FKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---------DERGKLDEVVERLGLE--NILDRDISELSGGELQR 220 (590)
T ss_pred HHHHhccCcceeecccchhhhhhhhcchHHHHHHhh---------hHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHH
Confidence 2221 2346776775444333 2999998631 2346788999999996 37899999999999999
Q ss_pred HHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCC
Q 007178 439 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDG 505 (614)
Q Consensus 439 l~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G 505 (614)
++||+||+.+|+++||||||++||+.+++.+++.|+++++|+|||++||++++++.+|||+.+|++|
T Consensus 221 v~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 221 VAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999999998644999999999999999999999999873
No 349
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=1.9e-37 Score=355.31 Aligned_cols=194 Identities=20% Similarity=0.328 Sum_probs=165.6
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 369 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~ 369 (614)
..++++|+++.|++ ++.+++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.+++ +
T Consensus 450 ~~i~~~nv~~~~~~-----~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~----------~ 514 (659)
T TIGR00954 450 NGIKFENIPLVTPN-----GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA----------K 514 (659)
T ss_pred CeEEEEeeEEECCC-----CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC----------C
Confidence 46999999999963 24699999999999999999999999999999999999999999998763 4
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCCCCccccc---------CCCCChhHHHHH
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFHGGVADKQ---------AGKYSGGMKRRL 439 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~---------~~~LSgG~kqrl 439 (614)
+++||+||++.+++. |++||+.+.....+.. ....+++++++++.+++.+ ..+++ .++||||||||+
T Consensus 515 ~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~--~~~~~~g~~~~~~~~~~LSgGqkQRl 591 (659)
T TIGR00954 515 GKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTH--ILEREGGWSAVQDWMDVLSGGEKQRI 591 (659)
T ss_pred CcEEEECCCCCCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHH--HHhhcCCcccccccccCCCHHHHHHH
Confidence 679999999999987 9999998754322111 1122456788999999963 44443 378999999999
Q ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeC
Q 007178 440 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVD 504 (614)
Q Consensus 440 ~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~ 504 (614)
+||||++++|+++||||||+|||+.+++.+.+.+++. |+|+|++||+++++ ..|||+++|+.
T Consensus 592 ~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~--~~tvI~isH~~~~~-~~~d~il~l~~ 653 (659)
T TIGR00954 592 AMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRKSLW-KYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEeCchHHH-HhCCEEEEEeC
Confidence 9999999999999999999999999999999998763 89999999999987 57999999963
No 350
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.7e-37 Score=288.93 Aligned_cols=154 Identities=38% Similarity=0.709 Sum_probs=142.6
Q ss_pred EEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhhcce
Q 007178 294 SDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSM 372 (614)
Q Consensus 294 ~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~~~i 372 (614)
++|++|.|++ +.+++++|+++++||+++|+||||||||||+++|+|+++|++|+|+++|.++.. ...+.++.+
T Consensus 2 ~~~~~~~~~~------~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i 75 (157)
T cd00267 2 IENLSFRYGG------RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRI 75 (157)
T ss_pred eEEEEEEeCC------eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhce
Confidence 5899999963 469999999999999999999999999999999999999999999999998754 244566789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEE
Q 007178 373 GVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVV 452 (614)
Q Consensus 373 g~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vl 452 (614)
+|+|| ||||||||+++|+|++.+|+++
T Consensus 76 ~~~~q-----------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 76 GYVPQ-----------------------------------------------------LSGGQRQRVALARALLLNPDLL 102 (157)
T ss_pred EEEee-----------------------------------------------------CCHHHHHHHHHHHHHhcCCCEE
Confidence 99999 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCE
Q 007178 453 YMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGS 506 (614)
Q Consensus 453 lLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~ 506 (614)
+|||||+|||+.+++.+++.+++.+ +++|++++||+++++..+||++++|++|+
T Consensus 103 ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 103 LLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 9999999999999999999999864 47999999999999999999999999975
No 351
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=3.6e-36 Score=289.44 Aligned_cols=158 Identities=25% Similarity=0.298 Sum_probs=136.7
Q ss_pred ccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHH
Q 007178 309 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 388 (614)
Q Consensus 309 ~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~ 388 (614)
++.+++|+||++++||+++|+||||||||||+|+|. +++|++.++|.... ..++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~----~~~~~~~~~~q----------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPK----FSRNKLIFIDQ----------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcccc----cccccEEEEhH-----------
Confidence 477999999999999999999999999999999995 47999999876321 11345888887
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHH
Q 007178 389 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN--PKVVYMDEPSTGLDPASR 466 (614)
Q Consensus 389 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~--p~vllLDEPtsgLD~~~~ 466 (614)
.++++.++|.. ...++++.+||||||||+++|+|++.+ |+++||||||+|||+.++
T Consensus 68 ---------------------~~~l~~~~L~~-~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~ 125 (176)
T cd03238 68 ---------------------LQFLIDVGLGY-LTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDI 125 (176)
T ss_pred ---------------------HHHHHHcCCCc-cccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHH
Confidence 24678889863 237889999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEE
Q 007178 467 NNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQ 508 (614)
Q Consensus 467 ~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~ 508 (614)
+.+.+.+++.. +|+|||++||+++++. .|||+++|++|+-.
T Consensus 126 ~~l~~~l~~~~~~g~tvIivSH~~~~~~-~~d~i~~l~~g~~~ 167 (176)
T cd03238 126 NQLLEVIKGLIDLGNTVILIEHNLDVLS-SADWIIDFGPGSGK 167 (176)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEECCCCCC
Confidence 99999999864 6999999999999975 79999999776543
No 352
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-36 Score=285.83 Aligned_cols=191 Identities=29% Similarity=0.416 Sum_probs=171.1
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhc
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 370 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~ 370 (614)
+++.+||+...+ +...+.++||++.+||++-|.||||||||||+|+|+|+.+|++|+|+++|..+...++..++
T Consensus 2 ~L~a~~L~~~R~------e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~ 75 (209)
T COG4133 2 MLEAENLSCERG------ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQ 75 (209)
T ss_pred cchhhhhhhccC------cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHH
Confidence 356677877765 46799999999999999999999999999999999999999999999999999887777777
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCC
Q 007178 371 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 450 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~ 450 (614)
.+-|+--.+.+-+.||++|||.|+.++.+. .....+.++++.+||. .+.|.++.+||-|||||++|||-.+..++
T Consensus 76 ~l~yLGH~~giK~eLTa~ENL~F~~~~~~~---~~~~~i~~Al~~vgL~--g~~dlp~~~LSAGQqRRvAlArL~ls~~p 150 (209)
T COG4133 76 ALLYLGHQPGIKTELTALENLHFWQRFHGS---GNAATIWEALAQVGLA--GLEDLPVGQLSAGQQRRVALARLWLSPAP 150 (209)
T ss_pred HHHHhhccccccchhhHHHHHHHHHHHhCC---CchhhHHHHHHHcCcc--cccccchhhcchhHHHHHHHHHHHcCCCC
Confidence 788888888999999999999999998764 1235688999999997 58999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHH-hcCCceEEEEcCCHHHH
Q 007178 451 VVYMDEPSTGLDPASRNNLWNVVKR-AKQGRAIILTTHSMEEA 492 (614)
Q Consensus 451 vllLDEPtsgLD~~~~~~i~~~l~~-~~~g~tIil~TH~~~e~ 492 (614)
+.|||||+++||...+..+-+++.. ..+|--||++||+.--+
T Consensus 151 LWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~ 193 (209)
T COG4133 151 LWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPI 193 (209)
T ss_pred ceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCC
Confidence 9999999999999999999999987 56788999999986443
No 353
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-36 Score=277.85 Aligned_cols=225 Identities=26% Similarity=0.410 Sum_probs=184.9
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCee-----CCC
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD-----IRT 363 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~-----i~~ 363 (614)
.+.+++++++|.|++ ....+|+||++++||+.||+|.+|||||||+++|+|-+.|++|+|.+.-.+ +..
T Consensus 4 ~PLL~V~~lsk~Yg~------~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~ 77 (258)
T COG4107 4 KPLLSVSGLSKLYGP------GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYT 77 (258)
T ss_pred CcceeehhhhhhhCC------CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhh
Confidence 356899999999985 458999999999999999999999999999999999999999999886432 211
Q ss_pred cHH-----HhhcceEEEcCCCC--CCCCCC----HHHHHHH-HhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCC
Q 007178 364 DMD-----RIYTSMGVCPQEDL--LWETLT----GREHLLF-YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKY 431 (614)
Q Consensus 364 ~~~-----~~~~~ig~~~Q~~~--l~~~lT----v~e~l~~-~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~L 431 (614)
..+ -.|..=|++.|+|. |-...+ +.|-+.- +.+- ..++++.+.++|+++++.. +..|..+.+.
T Consensus 78 msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RH----YG~iR~~a~~WL~~VEI~~-~RiDD~PrtF 152 (258)
T COG4107 78 MSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARH----YGNIRAEAQDWLEEVEIDL-DRIDDLPRTF 152 (258)
T ss_pred hchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhh----hhhHHHHHHHHHHhcccCc-ccccCccccc
Confidence 111 13445799999974 322222 3333332 2222 2356778899999999985 5778999999
Q ss_pred ChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEE
Q 007178 432 SGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQC 509 (614)
Q Consensus 432 SgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~ 509 (614)
|||||||+.|||-|+..|+++++||||.|||...+.++.++++.+ .+ |.+++++|||+..+.-++||..+|++|++++
T Consensus 153 SGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve 232 (258)
T COG4107 153 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVE 232 (258)
T ss_pred chHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEec
Confidence 999999999999999999999999999999999999999999986 34 8999999999999999999999999999999
Q ss_pred EcCHHHHHHhcCCcE
Q 007178 510 IGNPKELKARYGGSY 524 (614)
Q Consensus 510 ~g~~~~l~~~~~~~~ 524 (614)
.|-.+.+.......|
T Consensus 233 ~GLTDrvLDDP~hPY 247 (258)
T COG4107 233 SGLTDRVLDDPHHPY 247 (258)
T ss_pred cccccccccCCCCch
Confidence 998887766554444
No 354
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=8.7e-35 Score=335.79 Aligned_cols=219 Identities=25% Similarity=0.374 Sum_probs=187.6
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEEcCeeCCCcHHHh
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR--TTSGTAYVQGLDIRTDMDRI 368 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~--p~sG~i~i~G~~i~~~~~~~ 368 (614)
.....|+.+.-+.+. ++++.|+|||=-++||-.+||+|+|||||||||++|+|=.. -.+|+|.|+|.+... +.-
T Consensus 787 V~~w~dl~~~~~~qG--~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q--~tF 862 (1391)
T KOG0065|consen 787 VFYWVDLPYEMPIQG--GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ--ETF 862 (1391)
T ss_pred eEEEEeCCccccccc--cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch--hhh
Confidence 445566666553321 36889999999999999999999999999999999999643 357999999998653 455
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC---CchhHHHHHHHHHHHcCCCCCCcccccCCC----CChhHHHHHHH
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNL---KGPALTQAVEESLKSVNLFHGGVADKQAGK----YSGGMKRRLSV 441 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~---~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~----LSgG~kqrl~i 441 (614)
+|.+|||-|+|.-.+.+||||-|.|.+.+|.. +.++..+.++++++.++|. +++|..++. ||..|||||.|
T Consensus 863 ~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~--~~~daiVG~~G~GLs~eQRKrLTI 940 (1391)
T KOG0065|consen 863 ARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELK--EYADALVGLPGSGLSTEQRKRLTI 940 (1391)
T ss_pred ccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCch--hhhhhhccCCCCCCCHHHhceeeE
Confidence 67899999999888999999999999998743 3455557899999999997 488888887 99999999999
Q ss_pred HHHHhCCC-CEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHH-HHHhhCCEEEEEeC-CEEEEEcCHHH
Q 007178 442 AISLIGNP-KVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSME-EAEALCDRLGIFVD-GSLQCIGNPKE 515 (614)
Q Consensus 442 a~al~~~p-~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~-e~~~l~dri~il~~-G~l~~~g~~~~ 515 (614)
|.-|+.+| .+|+|||||||||..+.-.+++.++++ .+|+||+.|-|++. ++.+-.||+++|+. |+.+..|++.+
T Consensus 941 gVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 941 GVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred EEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 99999999 999999999999999999999999996 57999999999986 55566899999876 58999998754
No 355
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=9.7e-36 Score=367.42 Aligned_cols=208 Identities=22% Similarity=0.385 Sum_probs=173.1
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhc
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 370 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~ 370 (614)
.++++|+++.|++. ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 636 ~i~~~~~~~~~~~~----~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------ 699 (1522)
T TIGR00957 636 SITVHNATFTWARD----LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG------------ 699 (1522)
T ss_pred cEEEEEeEEEcCCC----CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC------------
Confidence 69999999999742 25699999999999999999999999999999999999999999999987
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHH--HHHHHcCCCC---CCcccccCCCCChhHHHHHHHHHHH
Q 007178 371 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE--ESLKSVNLFH---GGVADKQAGKYSGGMKRRLSVAISL 445 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~--~~l~~~~L~~---~~~~~~~~~~LSgG~kqrl~ia~al 445 (614)
++|||||++.+++ .|++||+.++... ..++.++.++ .+.+.++..+ +...+++..+||||||||++||||+
T Consensus 700 ~i~yv~Q~~~l~~-~Ti~eNI~~g~~~---~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl 775 (1522)
T TIGR00957 700 SVAYVPQQAWIQN-DSLRENILFGKAL---NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAV 775 (1522)
T ss_pred EEEEEcCCccccC-CcHHHHhhcCCcc---CHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHH
Confidence 3899999999886 5999999975321 2222211111 1122222211 1234677889999999999999999
Q ss_pred hCCCCEEEEeCCCCCCCHHHHHHHHHHHHH---hcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 446 IGNPKVVYMDEPSTGLDPASRNNLWNVVKR---AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 446 ~~~p~vllLDEPtsgLD~~~~~~i~~~l~~---~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
+.+|+++||||||++||+..++++++.+.+ ..+|+|+|++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 776 ~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~ii~l~~G~i~~~g~~~~l~~~ 851 (1522)
T TIGR00957 776 YSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ-VDVIIVMSGGKISEMGSYQELLQR 851 (1522)
T ss_pred hcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh-CCEEEEecCCeEEeeCCHHHHHhc
Confidence 999999999999999999999999999864 3468999999999999876 999999999999999999998754
No 356
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=5.5e-36 Score=343.92 Aligned_cols=216 Identities=20% Similarity=0.257 Sum_probs=168.5
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCC---CCCccEEEEcCeeCCC---
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT---RTTSGTAYVQGLDIRT--- 363 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~---~p~sG~i~i~G~~i~~--- 363 (614)
.+|+++|++|+|++ +.+|+|+||+|++|+++||+||||||||||+|+|+|.. .|++|+|.+.++++..
T Consensus 176 ~~I~i~nls~~y~~------~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~ 249 (718)
T PLN03073 176 KDIHMENFSISVGG------RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDT 249 (718)
T ss_pred eeEEEceEEEEeCC------CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCC
Confidence 46999999999974 46999999999999999999999999999999999964 6889999865543210
Q ss_pred -c--------H---HHhhcceEEEcCCCCCCCCCCHHHH-----------------HH-HHhhhcCCCchhHHHHHHHHH
Q 007178 364 -D--------M---DRIYTSMGVCPQEDLLWETLTGREH-----------------LL-FYGRLKNLKGPALTQAVEESL 413 (614)
Q Consensus 364 -~--------~---~~~~~~ig~~~Q~~~l~~~lTv~e~-----------------l~-~~~~~~~~~~~~~~~~~~~~l 413 (614)
. . ...++.+|+++|++.+... ++.++ +. ...++........+.++.+++
T Consensus 250 t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L 328 (718)
T PLN03073 250 TALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASIL 328 (718)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHH
Confidence 0 0 1123447888886543221 11111 11 011111111224566788889
Q ss_pred HHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHH
Q 007178 414 KSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAE 493 (614)
Q Consensus 414 ~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~ 493 (614)
+.+|+.+ ...++++.+||||||||++||+||+.+|++|||||||++||+.+++.+.+.|++. +.|||++|||++++.
T Consensus 329 ~~lgl~~-~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~ 405 (718)
T PLN03073 329 AGLSFTP-EMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLN 405 (718)
T ss_pred HHCCCCh-HHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 9999963 3578899999999999999999999999999999999999999999999999876 679999999999999
Q ss_pred hhCCEEEEEeCCEEE-EEcCHHH
Q 007178 494 ALCDRLGIFVDGSLQ-CIGNPKE 515 (614)
Q Consensus 494 ~l~dri~il~~G~l~-~~g~~~~ 515 (614)
.+|||+++|++|++. ..|+.++
T Consensus 406 ~~~d~i~~l~~g~i~~~~g~~~~ 428 (718)
T PLN03073 406 TVVTDILHLHGQKLVTYKGDYDT 428 (718)
T ss_pred HhCCEEEEEECCEEEEeCCCHHH
Confidence 999999999999996 5676643
No 357
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.3e-35 Score=365.77 Aligned_cols=206 Identities=24% Similarity=0.379 Sum_probs=173.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhc
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 370 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~ 370 (614)
.++++|+++.|++.. ++.+|+|+||+|++||.++|+||+|||||||+++|.|+++|++|.+. ..|+
T Consensus 614 ~I~~~~vsF~y~~~~---~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~-----------~~~~ 679 (1495)
T PLN03232 614 AISIKNGYFSWDSKT---SKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV-----------VIRG 679 (1495)
T ss_pred cEEEEeeEEEcCCCC---CCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE-----------EecC
Confidence 599999999997421 35799999999999999999999999999999999999999998763 2467
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHHH
Q 007178 371 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLSV 441 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~i 441 (614)
+|+||||++.+++. |++|||.|+.. . .+++.+++++.++|.+ +.....+..+||||||||++|
T Consensus 680 ~Iayv~Q~p~Lf~g-TIreNI~fg~~---~----~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaL 751 (1495)
T PLN03232 680 SVAYVPQVSWIFNA-TVRENILFGSD---F----ESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSM 751 (1495)
T ss_pred cEEEEcCccccccc-cHHHHhhcCCc---c----CHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHH
Confidence 89999999999986 99999998632 1 2345666666666532 012234456799999999999
Q ss_pred HHHHhCCCCEEEEeCCCCCCCHHHHHHHHHH-HHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 442 AISLIGNPKVVYMDEPSTGLDPASRNNLWNV-VKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 442 a~al~~~p~vllLDEPtsgLD~~~~~~i~~~-l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
|||+..+|+++|||||||+||+...+++.+. ++...+|+|+|++||+++.+. .||+|++|++|++++.|+.+++.++
T Consensus 752 ARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~-~aD~Ii~L~~G~i~~~Gt~~eL~~~ 829 (1495)
T PLN03232 752 ARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLP-LMDRIILVSEGMIKEEGTFAELSKS 829 (1495)
T ss_pred HHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHH-hCCEEEEEeCCEEEEecCHHHHHhc
Confidence 9999999999999999999999999988765 555567899999999998865 5999999999999999999998754
No 358
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.7e-35 Score=362.55 Aligned_cols=193 Identities=21% Similarity=0.358 Sum_probs=161.4
Q ss_pred cceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHH
Q 007178 310 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 389 (614)
Q Consensus 310 ~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e 389 (614)
+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| ++|||||++.+++. |++|
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g------------~iayv~Q~~~l~~~-Ti~e 505 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG------------RISFSPQTSWIMPG-TIKD 505 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC------------EEEEEeCCCccCCc-cHHH
Confidence 4689999999999999999999999999999999999999999999988 38999999999986 9999
Q ss_pred HHHHHhhhcCCCchhHHHH-----HHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHH
Q 007178 390 HLLFYGRLKNLKGPALTQA-----VEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA 464 (614)
Q Consensus 390 ~l~~~~~~~~~~~~~~~~~-----~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~ 464 (614)
|+.|+... ..+..++. +++.++.+...+......+..+||||||||++||||++.+|+++||||||+|||+.
T Consensus 506 NI~~g~~~---~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~ 582 (1490)
T TIGR01271 506 NIIFGLSY---DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVV 582 (1490)
T ss_pred HHHhcccc---chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 99976422 11111111 12223333221111345668899999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 465 SRNNLWNV-VKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 465 ~~~~i~~~-l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
.++++++. +.+..+|+|+|++||+++.+.. ||||++|++|++++.|+++++.+.
T Consensus 583 ~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~-ad~ii~l~~g~i~~~g~~~~l~~~ 637 (1490)
T TIGR01271 583 TEKEIFESCLCKLMSNKTRILVTSKLEHLKK-ADKILLLHEGVCYFYGTFSELQAK 637 (1490)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeCChHHHHh-CCEEEEEECCEEEEEcCHHHHHhc
Confidence 99999985 6666679999999999999875 999999999999999999998753
No 359
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.8e-35 Score=365.09 Aligned_cols=205 Identities=24% Similarity=0.395 Sum_probs=174.5
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCc-cEEEEcCeeCCCcHHHhh
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS-GTAYVQGLDIRTDMDRIY 369 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~s-G~i~i~G~~i~~~~~~~~ 369 (614)
.|+++|+++.|+... ++.+|+|+||+|++||.++|+||+|||||||+++|.|.++|++ |+|.+ +
T Consensus 614 ~I~~~nvsf~y~~~~---~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l------------~ 678 (1622)
T PLN03130 614 AISIKNGYFSWDSKA---ERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI------------R 678 (1622)
T ss_pred ceEEEeeEEEccCCC---CCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE------------c
Confidence 599999999997421 3569999999999999999999999999999999999999999 89974 4
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHH
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 440 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~ 440 (614)
++|+||||++.+++. |++|||.|+... .+++.+++++.++|.+ +.....+..+||||||||++
T Consensus 679 ~~Iayv~Q~p~Lfng-TIreNI~fg~~~-------d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIa 750 (1622)
T PLN03130 679 GTVAYVPQVSWIFNA-TVRDNILFGSPF-------DPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVS 750 (1622)
T ss_pred CeEEEEcCccccCCC-CHHHHHhCCCcc-------cHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHH
Confidence 569999999999986 999999986321 2456667777776642 01223455679999999999
Q ss_pred HHHHHhCCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 441 VAISLIGNPKVVYMDEPSTGLDPASRNNLWN-VVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 441 ia~al~~~p~vllLDEPtsgLD~~~~~~i~~-~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
||||+..+|+++|||||||+||+...+++.+ +++...+|+|+|++||+++.+. .||+|++|++|++++.|+.+++.++
T Consensus 751 LARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~-~aD~Ii~L~~G~i~e~Gt~~eL~~~ 829 (1622)
T PLN03130 751 MARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLS-QVDRIILVHEGMIKEEGTYEELSNN 829 (1622)
T ss_pred HHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHH-hCCEEEEEeCCEEEEeCCHHHHHhc
Confidence 9999999999999999999999999988765 5665567899999999998765 5999999999999999999999754
No 360
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=5.4e-35 Score=322.80 Aligned_cols=201 Identities=27% Similarity=0.369 Sum_probs=174.2
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 369 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~ 369 (614)
.+|+++|+++.|++ +.+++|+|+++.+|+++||+|+||||||||||+|+|...|++|+|...+.
T Consensus 2 ~~i~~~~ls~~~g~------~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~---------- 65 (530)
T COG0488 2 SMITLENLSLAYGD------RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG---------- 65 (530)
T ss_pred ceEEEeeeEEeeCC------ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC----------
Confidence 36899999999973 68999999999999999999999999999999999999999999987642
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhh-hc-----------------------------CCCchhHHHHHHHHHHHcCCC
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGR-LK-----------------------------NLKGPALTQAVEESLKSVNLF 419 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~-~~-----------------------------~~~~~~~~~~~~~~l~~~~L~ 419 (614)
.++||++|++.+.+..||.+.+.-... +. .....+.+.+++.++..+|+.
T Consensus 66 ~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~ 145 (530)
T COG0488 66 LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFP 145 (530)
T ss_pred ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCC
Confidence 248999999999999999987764321 00 001122346788889989997
Q ss_pred CCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEE
Q 007178 420 HGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRL 499 (614)
Q Consensus 420 ~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri 499 (614)
+ . ++++++||||||+|+++|+||..+|++|||||||+.||..+...+-+.|++.+ | |+|++|||-+.....|++|
T Consensus 146 ~--~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~-g-tviiVSHDR~FLd~V~t~I 220 (530)
T COG0488 146 D--E-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYP-G-TVIVVSHDRYFLDNVATHI 220 (530)
T ss_pred c--c-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCC-C-cEEEEeCCHHHHHHHhhhe
Confidence 4 3 99999999999999999999999999999999999999999999999998644 5 9999999999999999999
Q ss_pred EEEeCCEEEEEc
Q 007178 500 GIFVDGSLQCIG 511 (614)
Q Consensus 500 ~il~~G~l~~~g 511 (614)
+-++.|++...+
T Consensus 221 ~~ld~g~l~~y~ 232 (530)
T COG0488 221 LELDRGKLTPYK 232 (530)
T ss_pred EEecCCceeEec
Confidence 999999887653
No 361
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-35 Score=303.69 Aligned_cols=217 Identities=23% Similarity=0.436 Sum_probs=185.2
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 368 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~ 368 (614)
..+.++|+++.|.. ++++|+++||+++.|+.++++||+|+||||++++|-.++.+++|.|.++|+|++. ....+
T Consensus 261 g~v~F~~V~F~y~~-----~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~sl 335 (497)
T COG5265 261 GAVAFINVSFAYDP-----RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSL 335 (497)
T ss_pred ceEEEEEEEeeccc-----cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHH
Confidence 35889999999975 5789999999999999999999999999999999999999999999999999975 34668
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC-----CCcccccCC----CCChhHHHHH
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH-----GGVADKQAG----KYSGGMKRRL 439 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----~~~~~~~~~----~LSgG~kqrl 439 (614)
|+.||.+|||..||.+ |...|+.+..-- .+ ++++..+++...+.+ .+-.+..++ .||||||||+
T Consensus 336 R~aIg~VPQDtvLFND-ti~yni~ygr~~--at----~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrv 408 (497)
T COG5265 336 RRAIGIVPQDTVLFND-TIAYNIKYGRPD--AT----AEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRV 408 (497)
T ss_pred HHHhCcCcccceehhh-hHHHHHhccCcc--cc----HHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHH
Confidence 8999999999999998 999999874211 11 222333333332210 012233343 6999999999
Q ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 440 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 440 ~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
+|||+++.+|++++|||.||+||....+++...|++..+|+|-+++.|.+..+-. ||.|++|++|+|++.|+.++|..+
T Consensus 409 aiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~-adeiivl~~g~i~erg~h~~ll~~ 487 (497)
T COG5265 409 AIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIID-ADEIIVLDNGRIVERGTHEELLAA 487 (497)
T ss_pred HHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccC-CceEEEeeCCEEEecCcHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999875 999999999999999999999887
No 362
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.5e-35 Score=269.47 Aligned_cols=213 Identities=22% Similarity=0.315 Sum_probs=187.1
Q ss_pred eEEEEeEEEEcCCCC-CCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCee----CCC-c
Q 007178 291 AIISDNLRKIYPGRD-GNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD----IRT-D 364 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~-~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~----i~~-~ 364 (614)
.+.++|++|+|--+. ++-.-++++|+||+++.|||++|=||+||||||++|+|-|.+.|++|+|.+.... +.. .
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 588999999985332 1224579999999999999999999999999999999999999999999986532 211 1
Q ss_pred H----HHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHH
Q 007178 365 M----DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 440 (614)
Q Consensus 365 ~----~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ 440 (614)
+ +-.|+.|||+.|+-...|..+..|-+.-+..-+|.+.+..+.++.+++.++++.+ .+++-.+.+.|||||||+.
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlpe-rLW~LaPaTFSGGEqQRVN 162 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPE-RLWSLAPATFSGGEQQRVN 162 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCH-HHhcCCCcccCCchheehh
Confidence 1 2234679999999988999999998888888889999999999999999999985 6889999999999999999
Q ss_pred HHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeC
Q 007178 441 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVD 504 (614)
Q Consensus 441 ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~ 504 (614)
|||.++.|=++|+|||||+.||..+|+-+.++|++.| +|.+++=+=||-+-=+..|||++.|..
T Consensus 163 IaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 163 IARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred hhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 9999999999999999999999999999999999875 699999999998888899999987754
No 363
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=8.6e-35 Score=263.15 Aligned_cols=199 Identities=25% Similarity=0.429 Sum_probs=173.7
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEEcCeeCCCcHHH
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT---SGTAYVQGLDIRTDMDR 367 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~---sG~i~i~G~~i~~~~~~ 367 (614)
++.++|++.+-++ +..|-|+|++|.+|||+.|+||+|||||||+.-+.|.+.++ +|++.++++++..- ..
T Consensus 2 ~l~l~nvsl~l~g------~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~l-Pa 74 (213)
T COG4136 2 MLCLKNVSLRLPG------SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDML-PA 74 (213)
T ss_pred ceeeeeeeecCCC------ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeecccc-ch
Confidence 4778999987764 56899999999999999999999999999999999998874 89999999998653 34
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHH--hhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 007178 368 IYTSMGVCPQEDLLWETLTGREHLLFY--GRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 445 (614)
Q Consensus 368 ~~~~ig~~~Q~~~l~~~lTv~e~l~~~--~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al 445 (614)
.++++|+.+||+-|||.++|.+|+.|. ..++| +..++.++.+|++.||. +..++.+.+||||||-|+++-|+|
T Consensus 75 ~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG---~aRr~~a~aAL~~~gL~--g~f~~dP~tlSGGQrARvaL~R~L 149 (213)
T COG4136 75 AQRQIGILFQDALLFPHLSVGQNLLFALPATLKG---NARRNAANAALERSGLD--GAFHQDPATLSGGQRARVALLRAL 149 (213)
T ss_pred hhhheeeeecccccccccccccceEEecCccccc---HHHHhhHHHHHHHhccc--hhhhcChhhcCcchHHHHHHHHHH
Confidence 568899999999999999999999874 33443 45567788999999997 488999999999999999999999
Q ss_pred hCCCCEEEEeCCCCCCCHHHHHHHHHHHH-Hhc-CCceEEEEcCCHHHHHhhCCEEEEE
Q 007178 446 IGNPKVVYMDEPSTGLDPASRNNLWNVVK-RAK-QGRAIILTTHSMEEAEALCDRLGIF 502 (614)
Q Consensus 446 ~~~p~vllLDEPtsgLD~~~~~~i~~~l~-~~~-~g~tIil~TH~~~e~~~l~dri~il 502 (614)
+..|+.++||||+|.||..-|.++.+..- +.+ .|...+++|||.+++. ...||+-|
T Consensus 150 la~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp-agsrVie~ 207 (213)
T COG4136 150 LAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP-AGSRVIEM 207 (213)
T ss_pred HhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC-CCCeeeee
Confidence 99999999999999999999999999874 454 5999999999999987 35666544
No 364
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=1.1e-33 Score=283.66 Aligned_cols=193 Identities=19% Similarity=0.254 Sum_probs=140.4
Q ss_pred ccceeeeeeEEEeCCcEEEEECCCCCcHHHHH-HHHhCCCCCCccEEEEcC-------ee---CCC-cHHHhh-cceEEE
Q 007178 309 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFI-SMMIGITRTTSGTAYVQG-------LD---IRT-DMDRIY-TSMGVC 375 (614)
Q Consensus 309 ~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll-~~l~Gl~~p~sG~i~i~G-------~~---i~~-~~~~~~-~~ig~~ 375 (614)
+..+|+|+||+|++||++||+||||||||||+ ..+.+ +|++.+.+ .. +.. +..+.+ ...++.
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-----EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIA 81 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH-----HHHHHHhhcccchhhhhhcccCccccccccCCCceEE
Confidence 46799999999999999999999999999995 44431 34332110 00 000 001111 234455
Q ss_pred cCCCC--CCCCCCHH---HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCC-
Q 007178 376 PQEDL--LWETLTGR---EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP- 449 (614)
Q Consensus 376 ~Q~~~--l~~~lTv~---e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p- 449 (614)
+|++. +.+..++. |...+...+. ......++ .+.++.+++.+ ...++++.+||||||||++||+||+.+|
T Consensus 82 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~-~~~l~~~~l~~-~~~~~~~~~LSgG~~qrv~laral~~~p~ 157 (226)
T cd03270 82 IDQKTTSRNPRSTVGTVTEIYDYLRLLF--ARVGIRER-LGFLVDVGLGY-LTLSRSAPTLSGGEAQRIRLATQIGSGLT 157 (226)
T ss_pred ecCCCCCCCCCccHHHHHHHHHHHHHHh--hhhhHHHH-HHHHHHCCCCc-ccccCccCcCCHHHHHHHHHHHHHHhCCC
Confidence 55442 33444544 3222322221 12223333 56899999963 2479999999999999999999999998
Q ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEE------eCCEEEEEc
Q 007178 450 -KVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF------VDGSLQCIG 511 (614)
Q Consensus 450 -~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il------~~G~l~~~g 511 (614)
+++||||||+|||+.+++.+.+.|+++ ++|.|||++||++++++ +|||+++| ++|+++++|
T Consensus 158 ~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~-~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 158 GVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIR-AADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHH-hCCEEEEeCCCccccCCEEEecC
Confidence 599999999999999999999999986 46999999999999985 89999999 999999876
No 365
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.3e-33 Score=347.99 Aligned_cols=190 Identities=24% Similarity=0.404 Sum_probs=159.5
Q ss_pred cceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHH
Q 007178 310 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 389 (614)
Q Consensus 310 ~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e 389 (614)
+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+. ++||||||++.+++ .|++|
T Consensus 673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~------------~~i~yv~Q~~~l~~-~Tv~e 739 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE------------RSIAYVPQQAWIMN-ATVRG 739 (1560)
T ss_pred ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC------------CeEEEEeCCCccCC-CcHHH
Confidence 569999999999999999999999999999999999999999999753 46999999999886 59999
Q ss_pred HHHHHhhhcCCCchhHH-----HHHHHHHHHc--CCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCC
Q 007178 390 HLLFYGRLKNLKGPALT-----QAVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLD 462 (614)
Q Consensus 390 ~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD 462 (614)
|+.++... ..+..+ ..+++.++.+ |+. ...+++..+||||||||++||||++.+|+++||||||++||
T Consensus 740 nI~~~~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~--t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD 814 (1560)
T PTZ00243 740 NILFFDEE---DAARLADAVRVSQLEADLAQLGGGLE--TEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALD 814 (1560)
T ss_pred HHHcCChh---hHHHHHHHHHHhhhHHHHHHhhccch--HHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCC
Confidence 99985321 111111 1223344444 553 35678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 463 PASRNNLWNV-VKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 463 ~~~~~~i~~~-l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
+..++++++. +....+|+|+|++||+++.+. .||+|++|++|++.+.|+.+++.+
T Consensus 815 ~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~-~ad~ii~l~~G~i~~~G~~~~l~~ 870 (1560)
T PTZ00243 815 AHVGERVVEECFLGALAGKTRVLATHQVHVVP-RADYVVALGDGRVEFSGSSADFMR 870 (1560)
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEecCHHHHHh
Confidence 9999988875 344446899999999999986 699999999999999999999864
No 366
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.5e-33 Score=332.90 Aligned_cols=221 Identities=21% Similarity=0.389 Sum_probs=193.5
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHH
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDR 367 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~ 367 (614)
...|+++|++.+|... -..||+|+||+|++||-+||+|..|||||||+++|-.+..|++|+|.|||.|+.+ ....
T Consensus 1136 ~G~I~f~~~~~RYrp~----lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~d 1211 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRPN----LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHD 1211 (1381)
T ss_pred CCeEEEEEeEEEeCCC----CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHH
Confidence 3469999999999753 2579999999999999999999999999999999999999999999999999976 6788
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC-----CCcccc----cCCCCChhHHHH
Q 007178 368 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH-----GGVADK----QAGKYSGGMKRR 438 (614)
Q Consensus 368 ~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----~~~~~~----~~~~LSgG~kqr 438 (614)
+|++++.+||+|.||.+ |+|.||.=+... .++++-++||.++|.+ ....|. -..++|-||||.
T Consensus 1212 LRsrlsIIPQdPvLFsG-TvR~NLDPf~e~-------sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQL 1283 (1381)
T KOG0054|consen 1212 LRSRLSIIPQDPVLFSG-TVRFNLDPFDEY-------SDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQL 1283 (1381)
T ss_pred HHhcCeeeCCCCceecC-ccccccCccccc-------CHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHH
Confidence 99999999999999998 999999744322 2456777777776642 011233 345799999999
Q ss_pred HHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 439 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 439 l~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
+++||||+++++||+|||+||++|++.-..+.+.|++.=+++|||.+.|.++.+.. ||||+||++|++++.|+|++|.+
T Consensus 1284 lCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd-~DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1284 LCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMD-SDRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred HHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhh-cCeEEEeeCCeEeecCChHHHHh
Confidence 99999999999999999999999999999999999987678999999999999987 99999999999999999999987
Q ss_pred hcCC
Q 007178 519 RYGG 522 (614)
Q Consensus 519 ~~~~ 522 (614)
+.+.
T Consensus 1363 ~~~S 1366 (1381)
T KOG0054|consen 1363 DKDS 1366 (1381)
T ss_pred CCcc
Confidence 6543
No 367
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.5e-32 Score=293.74 Aligned_cols=213 Identities=22% Similarity=0.404 Sum_probs=187.3
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCC--CcHH
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR--TDMD 366 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~--~~~~ 366 (614)
.+.++++|++.. ..++|+||++++|||+||-|-=|||+|-+++.|.|..++++|+|.++|+++. +..+
T Consensus 261 ~~~l~v~~l~~~----------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~ 330 (500)
T COG1129 261 EPVLEVRNLSGG----------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRD 330 (500)
T ss_pred CcEEEEecCCCC----------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHH
Confidence 346778877632 2689999999999999999999999999999999999999999999999875 3456
Q ss_pred HhhcceEEEcCC---CCCCCCCCHHHHHHHHhhhcC------CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHH
Q 007178 367 RIYTSMGVCPQE---DLLWETLTGREHLLFYGRLKN------LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKR 437 (614)
Q Consensus 367 ~~~~~ig~~~Q~---~~l~~~lTv~e~l~~~~~~~~------~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kq 437 (614)
.++..|+|||.| ..++..+++++|+.+. .++. ++....++.++++.+.+++.. .-.++++.+||||+||
T Consensus 331 Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~-~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~-~s~~~~v~~LSGGNQQ 408 (500)
T COG1129 331 AIKAGIAYVPEDRKSEGLVLDMSIAENITLA-SLRRFSRRGLIDRRKERALAERYIRRLRIKT-PSPEQPIGTLSGGNQQ 408 (500)
T ss_pred HHHcCCEeCCcccccCcCcCCCcHHHheehH-hhhhhccccccChHHHHHHHHHHHHhcCccc-CCccchhhcCCchhhh
Confidence 788899999987 5789999999999887 2221 345566778899999999964 4568999999999999
Q ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCH
Q 007178 438 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 513 (614)
Q Consensus 438 rl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~ 513 (614)
|+.|||.|..+|++|||||||.|+|..++.++.++|+++ ++|++||++|-+|+|+..+||||++|++|+++..-+.
T Consensus 409 KVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~ 485 (500)
T COG1129 409 KVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDR 485 (500)
T ss_pred hHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecc
Confidence 999999999999999999999999999999999999996 6899999999999999999999999999999875433
No 368
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=7.2e-32 Score=297.99 Aligned_cols=206 Identities=25% Similarity=0.324 Sum_probs=178.7
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHh
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 368 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~ 368 (614)
...++++|++|.|++ ++.+++++||.|++|+.+||+||||+|||||+|+|+|...|.+|+|.+.-.
T Consensus 319 ~~vl~~~~~~~~y~~-----~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~--------- 384 (530)
T COG0488 319 KLVLEFENVSKGYDG-----GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET--------- 384 (530)
T ss_pred CeeEEEeccccccCC-----CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc---------
Confidence 457999999999974 367999999999999999999999999999999999999999999986532
Q ss_pred hcceEEEcCCC-CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhC
Q 007178 369 YTSMGVCPQED-LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 447 (614)
Q Consensus 369 ~~~ig~~~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~ 447 (614)
-++||.+|+. .+.++.|+.|++.-... ...+..+...|..+++.. +...++++.||||||.||.+|+.++.
T Consensus 385 -v~igyf~Q~~~~l~~~~t~~d~l~~~~~------~~~e~~~r~~L~~f~F~~-~~~~~~v~~LSGGEk~Rl~La~ll~~ 456 (530)
T COG0488 385 -VKIGYFDQHRDELDPDKTVLEELSEGFP------DGDEQEVRAYLGRFGFTG-EDQEKPVGVLSGGEKARLLLAKLLLQ 456 (530)
T ss_pred -eEEEEEEehhhhcCccCcHHHHHHhhCc------cccHHHHHHHHHHcCCCh-HHHhCchhhcCHhHHHHHHHHHHhcc
Confidence 3489999986 55577899998875421 111678899999999985 56799999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEE-cCHHHHHHh
Q 007178 448 NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCI-GNPKELKAR 519 (614)
Q Consensus 448 ~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~-g~~~~l~~~ 519 (614)
+|.+|||||||+.||..+++.+-+.|.+.. -|||++|||-+.++.+|++++++.+ ++... |..++..+.
T Consensus 457 ~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~--Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~ 526 (530)
T COG0488 457 PPNLLLLDEPTNHLDIESLEALEEALLDFE--GTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQ 526 (530)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHh
Confidence 999999999999999999999999998764 4999999999999999999999998 66555 777665543
No 369
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.98 E-value=1.4e-32 Score=253.51 Aligned_cols=132 Identities=35% Similarity=0.652 Sum_probs=119.0
Q ss_pred eeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhhcceEEEcCCCCCCCCCCHHHHH
Q 007178 313 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHL 391 (614)
Q Consensus 313 l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~~~ig~~~Q~~~l~~~lTv~e~l 391 (614)
|+|+|+++++||+++|+|+||||||||+++|+|+.+|++|+|.++|+++.. .....++.++|++|++.+++.+|++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 689999999999999999999999999999999999999999999999976 445677899999999999999999999
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccC----CCCChhHHHHHHHHHHHhCCCCEEEEeCCCC
Q 007178 392 LFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQA----GKYSGGMKRRLSVAISLIGNPKVVYMDEPST 459 (614)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~----~~LSgG~kqrl~ia~al~~~p~vllLDEPts 459 (614)
..+++++++++.+++.+ ..++.+ .+||+|||||++||+||+.+|+++||||||+
T Consensus 80 ------------~~~~~~~~~l~~l~~~~--~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ------------ESDERIEEVLKKLGLED--LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ------------HHHHHHHHHHHHTTHGG--GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ------------ccccccccccccccccc--ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 33456888888888753 444454 9999999999999999999999999999997
No 370
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.98 E-value=1e-31 Score=273.46 Aligned_cols=196 Identities=20% Similarity=0.278 Sum_probs=157.5
Q ss_pred cceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHh--------CC--CCCCc-----------cEEEEcCeeCCCcH---
Q 007178 310 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMI--------GI--TRTTS-----------GTAYVQGLDIRTDM--- 365 (614)
Q Consensus 310 ~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~--------Gl--~~p~s-----------G~i~i~G~~i~~~~--- 365 (614)
...|+|+|++|+.|+.+++.|++|||||||++.+. +. ..|.. --|.++..++....
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 45899999999999999999999999999998652 11 01221 14677776664211
Q ss_pred --------HHhhc----------------ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC
Q 007178 366 --------DRIYT----------------SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG 421 (614)
Q Consensus 366 --------~~~~~----------------~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~ 421 (614)
+.+|+ .+.|..++...+..||+.|++.|+..+++ .++..++++.+||..
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~------~~~~~~~L~~vgL~~- 160 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPK------IARKLQTLCDVGLGY- 160 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhh------HHHHHHHHHHcCCch-
Confidence 11221 24555666666778999999999876542 245678999999962
Q ss_pred CcccccCCCCChhHHHHHHHHHHHhCC---CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCC
Q 007178 422 GVADKQAGKYSGGMKRRLSVAISLIGN---PKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCD 497 (614)
Q Consensus 422 ~~~~~~~~~LSgG~kqrl~ia~al~~~---p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~d 497 (614)
...++++.+||||||||+++|+||+.+ |+++||||||+|||+..++.+++.++++. +|.|||++||++++++ .||
T Consensus 161 l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~-~aD 239 (261)
T cd03271 161 IKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIK-CAD 239 (261)
T ss_pred hhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCC
Confidence 147899999999999999999999996 79999999999999999999999999864 6999999999999986 699
Q ss_pred EEEEE------eCCEEEEEcCH
Q 007178 498 RLGIF------VDGSLQCIGNP 513 (614)
Q Consensus 498 ri~il------~~G~l~~~g~~ 513 (614)
+++.| ++|++++.|++
T Consensus 240 ~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 240 WIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred EEEEecCCcCCCCCEEEEeCCC
Confidence 99999 89999999974
No 371
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.98 E-value=4.1e-32 Score=266.60 Aligned_cols=164 Identities=20% Similarity=0.278 Sum_probs=136.2
Q ss_pred eeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCc---------cEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCC
Q 007178 314 NGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS---------GTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWET 384 (614)
Q Consensus 314 ~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~s---------G~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~ 384 (614)
+++++++++| +++|+||||||||||+++|+|+.+|.. |++.+.|+++... ..++.+|++||++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~vfq~~~~~-- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP--ANFAEVTLTFDNSDGR-- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC--CceEEEEEEEEcCCCc--
Confidence 6689999999 999999999999999999999987653 4677777766432 2346799999998766
Q ss_pred CCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHh----CCCCEEEEeCCCCC
Q 007178 385 LTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI----GNPKVVYMDEPSTG 460 (614)
Q Consensus 385 lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~----~~p~vllLDEPtsg 460 (614)
+ . .. .+++++++++. . +..++++.+||||||||+++|++++ .+|++++|||||+|
T Consensus 89 --------~-~----~~---~~~~~~~~l~~---~--~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~ 147 (197)
T cd03278 89 --------Y-S----II---SQGDVSEIIEA---P--GKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAA 147 (197)
T ss_pred --------e-e----EE---ehhhHHHHHhC---C--CccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCccc
Confidence 1 0 00 13466777776 2 3678999999999999999999987 56799999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeC
Q 007178 461 LDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVD 504 (614)
Q Consensus 461 LD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~ 504 (614)
||+.+++.+++.|++++++.|||++||++++++ .|||++.|..
T Consensus 148 LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~-~~d~v~~~~~ 190 (197)
T cd03278 148 LDDANVERFARLLKEFSKETQFIVITHRKGTME-AADRLYGVTM 190 (197)
T ss_pred CCHHHHHHHHHHHHHhccCCEEEEEECCHHHHh-hcceEEEEEe
Confidence 999999999999999876899999999999875 7999988764
No 372
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=2.8e-31 Score=313.79 Aligned_cols=208 Identities=22% Similarity=0.379 Sum_probs=179.9
Q ss_pred CCCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHH
Q 007178 288 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDR 367 (614)
Q Consensus 288 ~~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~ 367 (614)
.+..++++|.+++.+.. .....|+|+||+|++|+.+|++||-|||||+|+.+|.|..+..+|++.++|.
T Consensus 515 ~~~~i~i~~~sfsW~~~---~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs-------- 583 (1381)
T KOG0054|consen 515 GENAIEIKNGSFSWDSE---SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS-------- 583 (1381)
T ss_pred CCceEEEeeeeEecCCC---CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe--------
Confidence 34579999999998752 1345999999999999999999999999999999999999999999999984
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHH
Q 007178 368 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRR 438 (614)
Q Consensus 368 ~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqr 438 (614)
++||||.+.+++. ||||||.|+..+ .+++.+++++.+.|.+ ......+.-+||||||||
T Consensus 584 ----iaYv~Q~pWI~ng-TvreNILFG~~~-------d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqR 651 (1381)
T KOG0054|consen 584 ----VAYVPQQPWIQNG-TVRENILFGSPY-------DEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQR 651 (1381)
T ss_pred ----EEEeccccHhhCC-cHHHhhhcCccc-------cHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHH
Confidence 8999999999987 999999986433 3466777777777753 122345666899999999
Q ss_pred HHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHH-HHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHH
Q 007178 439 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNV-VKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 517 (614)
Q Consensus 439 l~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~-l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 517 (614)
+++|||+.+++|+++||.|.|++|....+++.+- |+..-+++|+|++||.++.... ||.|++|+||++...|+.+++.
T Consensus 652 IsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~-ad~Iivl~~G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 652 ISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPH-ADQIIVLKDGKIVESGTYEELL 730 (1381)
T ss_pred HHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhh-CCEEEEecCCeEecccCHHHHH
Confidence 9999999999999999999999999999888775 5456689999999999988764 9999999999999999999998
Q ss_pred Hh
Q 007178 518 AR 519 (614)
Q Consensus 518 ~~ 519 (614)
+.
T Consensus 731 ~~ 732 (1381)
T KOG0054|consen 731 KS 732 (1381)
T ss_pred hc
Confidence 54
No 373
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.97 E-value=1.2e-32 Score=273.30 Aligned_cols=185 Identities=19% Similarity=0.234 Sum_probs=148.7
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhh-
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY- 369 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~- 369 (614)
.|+++|.. .|++ +.+++++++ +++||+|||||||||++++|+ .++|.+.. ..+
T Consensus 5 ~l~l~nfk-~~~~------~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~----~~~~ 58 (212)
T cd03274 5 KLVLENFK-SYAG------EQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRAS----KMRQ 58 (212)
T ss_pred EEEEECcc-cCCC------CeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHH----Hhhh
Confidence 36777777 7763 569999987 899999999999999999997 34554431 222
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhh--------cCCCchhHHH--HHHHHHHHcCCCCCCcccccCCCCChhHHHHH
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGRL--------KNLKGPALTQ--AVEESLKSVNLFHGGVADKQAGKYSGGMKRRL 439 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~--------~~~~~~~~~~--~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl 439 (614)
+++|+++|+..+++.+|++|++.++... +|...++.+. ..+++++.++|. +..++++.+||+|||||+
T Consensus 59 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~--~~~~~~~~~lS~G~~~r~ 136 (212)
T cd03274 59 KKLSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMP--KKSWKNISNLSGGEKTLS 136 (212)
T ss_pred hhHHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccc--cccccchhhcCHHHHHHH
Confidence 5699999999999999999988877654 2332221111 125667788886 367889999999999999
Q ss_pred HHHHHHhC----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeC
Q 007178 440 SVAISLIG----NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVD 504 (614)
Q Consensus 440 ~ia~al~~----~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~ 504 (614)
++|+|++. +|++++|||||+||||.+++.+++.+++.+++.|+|++||+. ++.++|||+++|..
T Consensus 137 ~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~-~~~~~~d~v~~~~~ 204 (212)
T cd03274 137 SLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRN-NMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcH-HHHHhCCEEEEEEe
Confidence 99999973 589999999999999999999999999987788999999994 67789999999874
No 374
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.97 E-value=2.5e-31 Score=269.27 Aligned_cols=185 Identities=18% Similarity=0.234 Sum_probs=139.7
Q ss_pred cceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHh----------------CCCCCCcc--------EEEEcCeeC----
Q 007178 310 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMI----------------GITRTTSG--------TAYVQGLDI---- 361 (614)
Q Consensus 310 ~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~----------------Gl~~p~sG--------~i~i~G~~i---- 361 (614)
+.++++++ |++++|+||||||||||+++|+ +++.+++| ++.+++.+-
T Consensus 15 ~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~ 89 (243)
T cd03272 15 QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPI 89 (243)
T ss_pred CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCC
Confidence 56888876 8899999999999999999998 55666677 666666321
Q ss_pred CCcHHHhhcceEEEcCCCCCCC-CCCHHHHHHHHhhhcCCCchhHH--HHHHHHHHHcCCCCCCcccccCCCCChhHHHH
Q 007178 362 RTDMDRIYTSMGVCPQEDLLWE-TLTGREHLLFYGRLKNLKGPALT--QAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 438 (614)
Q Consensus 362 ~~~~~~~~~~ig~~~Q~~~l~~-~lTv~e~l~~~~~~~~~~~~~~~--~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqr 438 (614)
......+++.+|++||+..+++ ..|..|...+.... +....... ....++.+.+++. +..++++.+||||||||
T Consensus 90 ~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~-gl~~~~~~~~~~qg~i~~l~~l~--~~~~~~~~~lS~G~~~r 166 (243)
T cd03272 90 DKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESA-GFSRSNPYYIVPQGKINSLTNMK--QDEQQEMQQLSGGQKSL 166 (243)
T ss_pred CCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHc-CCCCCCCcEEEEcCchHHhhhcc--ccccccccccCHHHHHH
Confidence 1222345678999999988887 46777766555443 44322100 0011233334554 35788999999999999
Q ss_pred HHHHHHHh----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEe
Q 007178 439 LSVAISLI----GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV 503 (614)
Q Consensus 439 l~ia~al~----~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~ 503 (614)
++||+|++ .+|+++|+||||+||||.+++.+++.++++.++++||++||+. ++.++|||+++|.
T Consensus 167 ~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~-~~~~~~d~i~~l~ 234 (243)
T cd03272 167 VALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRP-ELLEVADKFYGVK 234 (243)
T ss_pred HHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHhhCCEEEEEE
Confidence 99999996 3689999999999999999999999999876688888888885 5778999999875
No 375
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.96 E-value=2.2e-30 Score=264.02 Aligned_cols=180 Identities=19% Similarity=0.218 Sum_probs=142.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCCCCC-ccEEEEcCe-eCCCc--H-HHhhcceEEEcCCC---------CCCCCCCHH
Q 007178 323 GECFGMLGPNGAGKTTFISMMIGITRTT-SGTAYVQGL-DIRTD--M-DRIYTSMGVCPQED---------LLWETLTGR 388 (614)
Q Consensus 323 Gei~~LlG~NGaGKTTll~~l~Gl~~p~-sG~i~i~G~-~i~~~--~-~~~~~~ig~~~Q~~---------~l~~~lTv~ 388 (614)
..+++|+||||||||||+++|+|++.|+ .|+++..|. ++... . ...+..+++++|++ .+.+.+||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 5699999999999999999999999886 468888776 43211 1 11234799999985 356678999
Q ss_pred HHHHHHhhhcC-C-CchhHHHHHHHHHHHcCCCCC------------------CcccccCCCCChhHHHHHHHHHHHh--
Q 007178 389 EHLLFYGRLKN-L-KGPALTQAVEESLKSVNLFHG------------------GVADKQAGKYSGGMKRRLSVAISLI-- 446 (614)
Q Consensus 389 e~l~~~~~~~~-~-~~~~~~~~~~~~l~~~~L~~~------------------~~~~~~~~~LSgG~kqrl~ia~al~-- 446 (614)
+++......+. . .++...+++.++++.+++..+ +..++++.+||||||||+++|+|++
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~ 184 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALL 184 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHh
Confidence 88865432211 1 133345788999999998521 2456889999999999999999998
Q ss_pred --CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEe
Q 007178 447 --GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV 503 (614)
Q Consensus 447 --~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~ 503 (614)
.+|+++++||||+|||+..++.+++.|++..+|.+||++||+ .++.+.|||++-+.
T Consensus 185 ~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~-~~~~~~~d~v~~~~ 242 (251)
T cd03273 185 LFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLK-EGMFNNANVLFRTR 242 (251)
T ss_pred hccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECC-HHHHHhCCEEEEEE
Confidence 588999999999999999999999999988779999999999 55566799997654
No 376
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.96 E-value=1.2e-28 Score=261.38 Aligned_cols=222 Identities=22% Similarity=0.371 Sum_probs=193.9
Q ss_pred CCCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeC-C--Cc
Q 007178 288 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI-R--TD 364 (614)
Q Consensus 288 ~~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i-~--~~ 364 (614)
....++++||+..=.. ...+++++||+|.+|||+||.|-.|-|.+.|+.+|+|+.+|.+|+|.++|+++ . +.
T Consensus 254 g~~vL~V~~L~v~~~~-----~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~ 328 (501)
T COG3845 254 GEVVLEVEDLSVKDRR-----GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSP 328 (501)
T ss_pred CCeEEEEeeeEeecCC-----CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCH
Confidence 3567999999976542 25799999999999999999999999999999999999999999999999997 2 23
Q ss_pred HHHhhcceEEEcCCC---CCCCCCCHHHHHHHHhhhc------C-CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChh
Q 007178 365 MDRIYTSMGVCPQED---LLWETLTGREHLLFYGRLK------N-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG 434 (614)
Q Consensus 365 ~~~~~~~ig~~~Q~~---~l~~~lTv~e~l~~~~~~~------~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG 434 (614)
.+..+..+||+|+|. .+-+++|+.||+.+...-+ + +...+.++...++++.++... .-.+.++.+||||
T Consensus 329 ~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~-~~~~~~a~~LSGG 407 (501)
T COG3845 329 RERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRA-PSPDAPARSLSGG 407 (501)
T ss_pred HHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccC-CCCCcchhhcCCc
Confidence 344557899999974 6888999999998864321 1 455778888999999999863 3467789999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCH
Q 007178 435 MKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 513 (614)
Q Consensus 435 ~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~ 513 (614)
++||+-+||-|..+|++|++.+||-|||..+.+.+.+.|.+. ++|++|+++|-++||+..+||||++|.+|+++...++
T Consensus 408 NqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~ 487 (501)
T COG3845 408 NQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPP 487 (501)
T ss_pred ceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceeccccc
Confidence 999999999999999999999999999999999999999886 5799999999999999999999999999999988777
Q ss_pred HH
Q 007178 514 KE 515 (614)
Q Consensus 514 ~~ 515 (614)
++
T Consensus 488 ~~ 489 (501)
T COG3845 488 EE 489 (501)
T ss_pred cc
Confidence 65
No 377
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.96 E-value=7.3e-30 Score=253.85 Aligned_cols=192 Identities=16% Similarity=0.163 Sum_probs=140.0
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEe-CCcEEEEECCCCCcHHHHHHHHhC-CCCCCccEEEEcC-eeCCCcHHH
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALP-SGECFGMLGPNGAGKTTFISMMIG-ITRTTSGTAYVQG-LDIRTDMDR 367 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~-~Gei~~LlG~NGaGKTTll~~l~G-l~~p~sG~i~i~G-~~i~~~~~~ 367 (614)
.|+++|.. .|.+ . ++++|+.. +|++++|+|||||||||++++|++ ++-+..+....+. .+.. ....
T Consensus 5 ~i~l~nf~-~y~~------~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~-~~~~ 73 (213)
T cd03279 5 KLELKNFG-PFRE------E---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVF-APGE 73 (213)
T ss_pred EEEEECCc-CcCC------c---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHh-cCCC
Confidence 47888888 6642 1 55667644 589999999999999999999996 4445555544331 0110 1122
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhC
Q 007178 368 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 447 (614)
Q Consensus 368 ~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~ 447 (614)
.+..+++.+|++... .++..+ .+.+.++..+.+ .++..++. ++.++++.+||||||||+++|+|++.
T Consensus 74 ~~~~v~~~f~~~~~~--~~~~r~-------~gl~~~~~~~~~--~l~~g~l~--~~l~~~~~~lS~G~~~r~~la~al~~ 140 (213)
T cd03279 74 DTAEVSFTFQLGGKK--YRVERS-------RGLDYDQFTRIV--LLPQGEFD--RFLARPVSTLSGGETFLASLSLALAL 140 (213)
T ss_pred ccEEEEEEEEECCeE--EEEEEe-------cCCCHHHHHHhh--hhhhcchH--HHhcCCccccCHHHHHHHHHHHHHHh
Confidence 345699999986321 122221 133333222211 24444454 46789999999999999999999984
Q ss_pred ----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCE
Q 007178 448 ----------NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGS 506 (614)
Q Consensus 448 ----------~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~ 506 (614)
+|+++||||||+|||+.+++.+.+.+++++ +|+|||++||+++++..+||++.+|++|.
T Consensus 141 ~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 141 SEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPG 210 (213)
T ss_pred HHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCC
Confidence 679999999999999999999999999875 48999999999999999999999999985
No 378
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.96 E-value=8.4e-30 Score=236.22 Aligned_cols=198 Identities=22% Similarity=0.336 Sum_probs=168.9
Q ss_pred eeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhhcceEEEcCCCCCCCCCCHHHH
Q 007178 312 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREH 390 (614)
Q Consensus 312 ~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~~~ig~~~Q~~~l~~~lTv~e~ 390 (614)
-|--+|..+..||+.-++||||||||||+-.++|++ |-+|+|.++|.++.. ...++.++-+|..|...-...|.|...
T Consensus 14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~Y 92 (248)
T COG4138 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHY 92 (248)
T ss_pred cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhh
Confidence 456678999999999999999999999999999998 569999999999864 333444556788887655556889988
Q ss_pred HHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhC-------CCCEEEEeCCCCCCCH
Q 007178 391 LLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG-------NPKVVYMDEPSTGLDP 463 (614)
Q Consensus 391 l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~-------~p~vllLDEPtsgLD~ 463 (614)
+.++. +.++....++++...++|+ ++..+.+++|||||-|||-+|...+. ..+++++|||.++||.
T Consensus 93 L~L~q-----P~~~~a~~i~~i~~~L~l~--DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDv 165 (248)
T COG4138 93 LTLHQ-----PDKTRTELLNDVAGALALD--DKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDV 165 (248)
T ss_pred hhhcC-----chHHHHHHHHHHHhhhccc--chhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhH
Confidence 87652 3455667888999999997 48899999999999999999987653 3479999999999999
Q ss_pred HHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHH
Q 007178 464 ASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 517 (614)
Q Consensus 464 ~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 517 (614)
..+..+-.+|.+. .+|.+|||++||++-..+.||++..++.|++...|..+++.
T Consensus 166 AQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVl 220 (248)
T COG4138 166 AQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVL 220 (248)
T ss_pred HHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhc
Confidence 9999888888886 67999999999999999999999999999999999988764
No 379
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.95 E-value=5.4e-27 Score=284.19 Aligned_cols=213 Identities=21% Similarity=0.309 Sum_probs=160.5
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHH---------HHhCCCCCCc----cE----
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFIS---------MMIGITRTTS----GT---- 353 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~---------~l~Gl~~p~s----G~---- 353 (614)
.++++|++ ...|+|+|++|++||+++|.|+||||||||++ .|.|...+.. +.
T Consensus 600 ~L~l~~~~-----------~~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~v 668 (1809)
T PRK00635 600 TLTLSKAT-----------KHNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRL 668 (1809)
T ss_pred eEEEeccc-----------cCCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCccccccccccccee
Confidence 46777664 13799999999999999999999999999999 6667543311 11
Q ss_pred EEEcCeeCCCc-----------HHHhh-------------------------------cceEE----EcCC---------
Q 007178 354 AYVQGLDIRTD-----------MDRIY-------------------------------TSMGV----CPQE--------- 378 (614)
Q Consensus 354 i~i~G~~i~~~-----------~~~~~-------------------------------~~ig~----~~Q~--------- 378 (614)
|.|+-.++... .+.+| +..|+ +|..
T Consensus 669 i~idQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~G 748 (1809)
T PRK00635 669 VHITRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLG 748 (1809)
T ss_pred EEecCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCC
Confidence 23332222110 00111 11222 1111
Q ss_pred --------CCCCCCCCHHHHHHHHhhh---cCCCchhHHHHHHHHHHHcCCCCCCc-ccccCCCCChhHHHHHHHHHHHh
Q 007178 379 --------DLLWETLTGREHLLFYGRL---KNLKGPALTQAVEESLKSVNLFHGGV-ADKQAGKYSGGMKRRLSVAISLI 446 (614)
Q Consensus 379 --------~~l~~~lTv~e~l~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~~~LSgG~kqrl~ia~al~ 446 (614)
...|..+||.|+|.+...- .....++..+++ ++++.+||.+ . .++++.+||||||||++||+||+
T Consensus 749 kRy~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~--l~l~q~~~tLSGGE~QRV~LAraL~ 825 (1809)
T PRK00635 749 KRFLPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDY--LPLGRPLSSLSGGEIQRLKLAYELL 825 (1809)
T ss_pred cccCHHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcc--hhhcCccccCCHHHHHHHHHHHHHh
Confidence 0256778999999886541 122334556666 5889999963 4 69999999999999999999997
Q ss_pred ---CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEe------CCEEEEEcCHHHH
Q 007178 447 ---GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFV------DGSLQCIGNPKEL 516 (614)
Q Consensus 447 ---~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~------~G~l~~~g~~~~l 516 (614)
.+|+++||||||+|||+.+++.++++|+++ ++|.|||++||+++++ ..||++++|. +|++++.|+++++
T Consensus 826 ~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel 904 (1809)
T PRK00635 826 APSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVV-KVADYVLELGPEGGNLGGYLLASCSPEEL 904 (1809)
T ss_pred hcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HhCCEEEEEccCCCCCCCEEEEeCCHHHH
Confidence 699999999999999999999999999986 4699999999999999 7899999996 8999999999998
Q ss_pred HH
Q 007178 517 KA 518 (614)
Q Consensus 517 ~~ 518 (614)
..
T Consensus 905 ~~ 906 (1809)
T PRK00635 905 IH 906 (1809)
T ss_pred Hh
Confidence 65
No 380
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.95 E-value=3.1e-28 Score=240.45 Aligned_cols=164 Identities=24% Similarity=0.277 Sum_probs=129.1
Q ss_pred eEEEeCCcEEEEECCCCCcHHHHHHHHh----CCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCC-----CCCCCCCH
Q 007178 317 SLALPSGECFGMLGPNGAGKTTFISMMI----GITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQED-----LLWETLTG 387 (614)
Q Consensus 317 sl~i~~Gei~~LlG~NGaGKTTll~~l~----Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~-----~l~~~lTv 387 (614)
++++.+| +++|+||||||||||+++|. |...|++|.+..+...+.. ...+..+++++|++ .+...+|+
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~--~~~~~~v~~~f~~~~~~~~~v~r~~~~ 93 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE--GEVRAQVKLAFENANGKKYTITRSLAI 93 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC--CCCcEEEEEEEEeCCCCEEEEEEEhhH
Confidence 4566677 99999999999999999994 9999988877622222222 12346799999987 34455688
Q ss_pred HHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHH------HHHHHHHhCCCCEEEEeCCCCCC
Q 007178 388 REHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR------LSVAISLIGNPKVVYMDEPSTGL 461 (614)
Q Consensus 388 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqr------l~ia~al~~~p~vllLDEPtsgL 461 (614)
.||+.+. + +.++++. .++++.+||+||||| +++|+|++.+|+++++||||++|
T Consensus 94 ~~~~~~~------~----~~~~~~~-----------~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~L 152 (204)
T cd03240 94 LENVIFC------H----QGESNWP-----------LLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNL 152 (204)
T ss_pred hhceeee------c----hHHHHHH-----------HhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCcccc
Confidence 8888542 1 1122222 266788999999996 78999999999999999999999
Q ss_pred CHHHHH-HHHHHHHHhc-C-CceEEEEcCCHHHHHhhCCEEEEEeCC
Q 007178 462 DPASRN-NLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDG 505 (614)
Q Consensus 462 D~~~~~-~i~~~l~~~~-~-g~tIil~TH~~~e~~~l~dri~il~~G 505 (614)
|+..++ .+.+++++++ + |++||++||+++.++ .||+++.|.+.
T Consensus 153 D~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~-~~d~i~~l~~~ 198 (204)
T cd03240 153 DEENIEESLAEIIEERKSQKNFQLIVITHDEELVD-AADHIYRVEKD 198 (204)
T ss_pred CHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHh-hCCEEEEEeeC
Confidence 999999 9999999864 4 899999999999875 69999988653
No 381
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.95 E-value=5.3e-27 Score=273.93 Aligned_cols=127 Identities=24% Similarity=0.361 Sum_probs=112.4
Q ss_pred CCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCC---CEEEEeCCCCCC
Q 007178 385 LTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP---KVVYMDEPSTGL 461 (614)
Q Consensus 385 lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p---~vllLDEPtsgL 461 (614)
||+.|++.|+..+++. .+..+.++.+||.. ...++++.+||||||||+.||++|+.+| +++||||||+||
T Consensus 792 ltv~E~l~~f~~~~~i------~~~l~~L~~vgL~~-l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGL 864 (943)
T PRK00349 792 MTVEEALEFFEAIPKI------ARKLQTLVDVGLGY-IKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGL 864 (943)
T ss_pred CcHHHHHHHHHhchhh------hHHHHHHHHCCCCc-ccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCC
Confidence 7999999998765432 23467899999962 2468999999999999999999999999 999999999999
Q ss_pred CHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEE------eCCEEEEEcCHHHHHHh
Q 007178 462 DPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF------VDGSLQCIGNPKELKAR 519 (614)
Q Consensus 462 D~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il------~~G~l~~~g~~~~l~~~ 519 (614)
|+..++.+++.|+++ ++|.|||++||+++++. .||+++.| ++|++++.|+++++.+.
T Consensus 865 D~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~-~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~ 928 (943)
T PRK00349 865 HFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK-TADWIIDLGPEGGDGGGEIVATGTPEEVAKV 928 (943)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEecCCcCCCCCEEEEeCCHHHHHhC
Confidence 999999999999986 46999999999999986 69999999 79999999999998764
No 382
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.95 E-value=3.3e-28 Score=250.05 Aligned_cols=204 Identities=25% Similarity=0.409 Sum_probs=169.7
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 368 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~ 368 (614)
..++++|+++.|.. ...-|.-||++|++||++-|+|.|||||||+++.|+|+++|++|+|++||+++.. +.++.
T Consensus 321 ~~lelrnvrfay~~-----~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledY 395 (546)
T COG4615 321 KTLELRNVRFAYQD-----NAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDY 395 (546)
T ss_pred cceeeeeeeeccCc-----ccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHH
Confidence 46999999999974 2357899999999999999999999999999999999999999999999999975 56788
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC-Cccccc--CCCCChhHHHHHHHHHHH
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG-GVADKQ--AGKYSGGMKRRLSVAISL 445 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-~~~~~~--~~~LSgG~kqrl~ia~al 445 (614)
|+-++-++-|..||+.+-.. ..+...+.++.+|+.+.|.++ ...|.. .-.||.|||+|+++-.|+
T Consensus 396 R~LfSavFsDyhLF~~ll~~------------e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~Al 463 (546)
T COG4615 396 RKLFSAVFSDYHLFDQLLGP------------EGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLAL 463 (546)
T ss_pred HHHHHHHhhhHhhhHhhhCC------------ccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHH
Confidence 88888888888888763222 222335677888888877531 122333 347999999999999999
Q ss_pred hCCCCEEEEeCCCCCCCHHHHHHHHHHHHH-hc-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEc
Q 007178 446 IGNPKVVYMDEPSTGLDPASRNNLWNVVKR-AK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 511 (614)
Q Consensus 446 ~~~p~vllLDEPtsgLD~~~~~~i~~~l~~-~~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g 511 (614)
+-+.+|+++||=.+.-||.-||.+.+.+.- ++ +|+||+.+|||-.- ...|||+.-|++|++++..
T Consensus 464 lEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~Y-F~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 464 LEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHY-FIHADRLLEMRNGQLSELT 530 (546)
T ss_pred HhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchh-hhhHHHHHHHhcCceeecc
Confidence 999999999999999999999999998764 55 69999999999544 4579999999999998753
No 383
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.95 E-value=4.1e-27 Score=250.79 Aligned_cols=220 Identities=19% Similarity=0.327 Sum_probs=165.2
Q ss_pred CCCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEc--CeeCCCcH
Q 007178 288 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQ--GLDIRTDM 365 (614)
Q Consensus 288 ~~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~--G~~i~~~~ 365 (614)
....++++|+++.|.+ +..++|.+|++.+|+-+||+|+|||||||+|++|+|-..|..-++.+. .+++....
T Consensus 72 ~s~dvk~~sls~s~~g------~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~ 145 (614)
T KOG0927|consen 72 ISRDVKIESLSLSFHG------VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSE 145 (614)
T ss_pred ccccceeeeeeeccCC------ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCch
Confidence 3456999999999974 679999999999999999999999999999999999988876665443 22221111
Q ss_pred -H----------HhhcceEEEcCCCCCC-CCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCCh
Q 007178 366 -D----------RIYTSMGVCPQEDLLW-ETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSG 433 (614)
Q Consensus 366 -~----------~~~~~ig~~~Q~~~l~-~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSg 433 (614)
. ..++++.|.-.+-... ++---.+-...+.++.....+..+.++.++|..+|... +..++.+.+|||
T Consensus 146 ~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~-~m~~k~~~~~Sg 224 (614)
T KOG0927|consen 146 KQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLS-EMQDKKVKDLSG 224 (614)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCH-hHHHHHhhccCc
Confidence 1 1111122211110000 11001111222333333455666777888888888764 678999999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCE-EEEEcC
Q 007178 434 GMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGS-LQCIGN 512 (614)
Q Consensus 434 G~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~-l~~~g~ 512 (614)
|+|+|+++||||..+|++|+|||||+|||+.++..+-+.|.+..++ ++++++|+-|.+..+|++|+-|.+++ +.+.|+
T Consensus 225 GwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gn 303 (614)
T KOG0927|consen 225 GWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGN 303 (614)
T ss_pred hHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhheecccceeeecCC
Confidence 9999999999999999999999999999999999999999887655 99999999999999999999999999 555677
Q ss_pred HHH
Q 007178 513 PKE 515 (614)
Q Consensus 513 ~~~ 515 (614)
.+.
T Consensus 304 ydq 306 (614)
T KOG0927|consen 304 YDQ 306 (614)
T ss_pred HHH
Confidence 654
No 384
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.94 E-value=2.8e-27 Score=252.00 Aligned_cols=208 Identities=18% Similarity=0.273 Sum_probs=170.5
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHh
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 368 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~ 368 (614)
.+.+.++|+++.|.+ +..+.++++|.++.++.++++||||||||||+|+++|.+.|+.|.|.-.-+.
T Consensus 387 ~pvi~~~nv~F~y~~-----~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~-------- 453 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSD-----NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN-------- 453 (614)
T ss_pred CCeEEEeccccCCCC-----cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc--------
Confidence 467999999999975 2379999999999999999999999999999999999999999998644332
Q ss_pred hcceEEEcCC--CCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHh
Q 007178 369 YTSMGVCPQE--DLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 446 (614)
Q Consensus 369 ~~~ig~~~Q~--~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~ 446 (614)
.+++--|+ ..+.-+.++-|++.= .. ++....+.+..++.++||+. +..+.+.++||+|||+||.+|++++
T Consensus 454 --~~~~y~Qh~~e~ldl~~s~le~~~~---~~--~~~~~~e~~r~ilgrfgLtg-d~q~~p~~~LS~Gqr~rVlFa~l~~ 525 (614)
T KOG0927|consen 454 --KLPRYNQHLAEQLDLDKSSLEFMMP---KF--PDEKELEEMRSILGRFGLTG-DAQVVPMSQLSDGQRRRVLFARLAV 525 (614)
T ss_pred --cchhhhhhhHhhcCcchhHHHHHHH---hc--cccchHHHHHHHHHHhCCCc-cccccchhhcccccchhHHHHHHHh
Confidence 24444554 334445677776542 11 22344577889999999984 5788999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEE-EEcCHHHHHHh
Q 007178 447 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQ-CIGNPKELKAR 519 (614)
Q Consensus 447 ~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~-~~g~~~~l~~~ 519 (614)
..|.+|+|||||+|||..+...+.+.|.+.. -+||++|||+..+.+++++|.+..||.+. ..|....-+.+
T Consensus 526 kqP~lLlLDEPtnhLDi~tid~laeaiNe~~--Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~yk~~ 597 (614)
T KOG0927|consen 526 KQPHLLLLDEPTNHLDIETIDALAEAINEFP--GGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIYKEH 597 (614)
T ss_pred cCCcEEEecCCCcCCCchhHHHHHHHHhccC--CceeeeechhhHHHHHHHHhHhhccCceeecCccHHHHHHH
Confidence 9999999999999999999999999887654 47999999999999999999999998754 46766555443
No 385
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.94 E-value=7.1e-27 Score=222.43 Aligned_cols=233 Identities=18% Similarity=0.277 Sum_probs=182.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC----CccEEEEcCeeCCC-cH
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT----TSGTAYVQGLDIRT-DM 365 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p----~sG~i~i~G~~i~~-~~ 365 (614)
.+.++||+..+....| ..+|++++|+++++||+-||+|.+|||||-..|.|+|..+- |.-+.++++.|+.. .+
T Consensus 3 LLDIrnL~IE~~TsqG--~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~P 80 (330)
T COG4170 3 LLDIRNLTIEFKTSQG--WVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred cccccceEEEEecCCC--ceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCCh
Confidence 3567888888865443 47899999999999999999999999999999999998753 45566777766643 22
Q ss_pred HHh----hcceEEEcCCCC--CCCCCCHHHHHHHH--h-hhcCCCc---hhHHHHHHHHHHHcCCCCC-CcccccCCCCC
Q 007178 366 DRI----YTSMGVCPQEDL--LWETLTGREHLLFY--G-RLKNLKG---PALTQAVEESLKSVNLFHG-GVADKQAGKYS 432 (614)
Q Consensus 366 ~~~----~~~ig~~~Q~~~--l~~~lTv~e~l~~~--~-~~~~~~~---~~~~~~~~~~l~~~~L~~~-~~~~~~~~~LS 432 (614)
++. -+.|+++||++. |.|.-++...|.-. . .++|.-. .-.++++-++|.++|+.++ +....++.+|-
T Consensus 81 r~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElT 160 (330)
T COG4170 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELT 160 (330)
T ss_pred HHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhc
Confidence 222 246889999974 55544443333210 0 1122111 1134677889999999641 34467889999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEE
Q 007178 433 GGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCI 510 (614)
Q Consensus 433 gG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~--~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~ 510 (614)
-||-|||.||+|++..|++||.||||+.+||..+.++..++.+.. +|.||++++||+..+.+.||++-+|..|+-++.
T Consensus 161 eGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ES 240 (330)
T COG4170 161 EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVES 240 (330)
T ss_pred cCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccc
Confidence 999999999999999999999999999999999999999999864 589999999999999999999999999999999
Q ss_pred cCHHHHHHhcCCcEE
Q 007178 511 GNPKELKARYGGSYV 525 (614)
Q Consensus 511 g~~~~l~~~~~~~~~ 525 (614)
++.+++.+.....|+
T Consensus 241 a~~e~l~~~PhHPYT 255 (330)
T COG4170 241 APSEELVTMPHHPYT 255 (330)
T ss_pred cchhHHhcCCCCchH
Confidence 999999887666553
No 386
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.94 E-value=2.4e-26 Score=225.90 Aligned_cols=171 Identities=16% Similarity=0.154 Sum_probs=128.9
Q ss_pred eeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCee---CCCcHHHhhcceEEEcCCCCCCCCCCHH
Q 007178 312 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD---IRTDMDRIYTSMGVCPQEDLLWETLTGR 388 (614)
Q Consensus 312 ~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~---i~~~~~~~~~~ig~~~Q~~~l~~~lTv~ 388 (614)
.++++++++.+| +.+|+|||||||||++..|......+.+ ....|.. +... ......|++.+|+..++++
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~-~~~~~~i~~~~~~~~~~~~---- 83 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKD-GESSAKITVTLKNQGLDAN---- 83 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhC-CCCeEEEEEEEEcCCccCC----
Confidence 457788888887 8899999999999999999754433221 1111221 1110 1113458889998776651
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH----hCCCCEEEEeCCCCCCCHH
Q 007178 389 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL----IGNPKVVYMDEPSTGLDPA 464 (614)
Q Consensus 389 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al----~~~p~vllLDEPtsgLD~~ 464 (614)
. .....+++++++++. . +..++++++||+|||||++||+|+ +.+|++++|||||+|||+.
T Consensus 84 -------~----~~~~~~~~~~~~l~~---~--~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~ 147 (198)
T cd03276 84 -------P----LCVLSQDMARSFLTS---N--KAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMV 147 (198)
T ss_pred -------c----CCHHHHHHHHHHhcc---c--cccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHH
Confidence 0 111224567777776 3 367899999999999999999999 5999999999999999999
Q ss_pred HHHHHHHHHHHh-cC---CceEEEEcCCHHHHHhhCCEEEEEeCCE
Q 007178 465 SRNNLWNVVKRA-KQ---GRAIILTTHSMEEAEALCDRLGIFVDGS 506 (614)
Q Consensus 465 ~~~~i~~~l~~~-~~---g~tIil~TH~~~e~~~l~dri~il~~G~ 506 (614)
.++.+.+.|++. ++ +.||+++||+++++..+ |||.||..|+
T Consensus 148 ~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 148 NRKISTDLLVKEAKKQPGRQFIFITPQDISGLASS-DDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEECCcccccccc-cceeEEEecC
Confidence 999999999875 32 36999999999999985 9999999865
No 387
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.93 E-value=3.5e-25 Score=258.34 Aligned_cols=125 Identities=24% Similarity=0.365 Sum_probs=108.6
Q ss_pred CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhC---CCCEEEEeCCCCC
Q 007178 384 TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG---NPKVVYMDEPSTG 460 (614)
Q Consensus 384 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~---~p~vllLDEPtsg 460 (614)
+|||.|.+.|+..+++. .+..++++.+||.. ...++++.+|||||+||+.||++|+. +|+++||||||+|
T Consensus 789 ~~tv~e~~~f~~~~~~i------~~~l~~L~~~gL~~-l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsg 861 (924)
T TIGR00630 789 DMTVEEAYEFFEAVPSI------SRKLQTLCDVGLGY-IKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTG 861 (924)
T ss_pred CCcHHHHHHHHHhccch------hHHHHHHHHcCCCc-hhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCC
Confidence 37888988888765432 23457889999962 24689999999999999999999997 5999999999999
Q ss_pred CCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEE------eCCEEEEEcCHHHH
Q 007178 461 LDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF------VDGSLQCIGNPKEL 516 (614)
Q Consensus 461 LD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il------~~G~l~~~g~~~~l 516 (614)
||+..++.+++.|+++ ++|.|||++||+++++. .||++++| ++|++++.|+++++
T Consensus 862 LD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~-~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 862 LHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK-TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 9999999999999987 46999999999999986 69999999 79999999999875
No 388
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.92 E-value=1.3e-25 Score=228.22 Aligned_cols=197 Identities=16% Similarity=0.177 Sum_probs=132.7
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCee-C-CCcH---
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD-I-RTDM--- 365 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~-i-~~~~--- 365 (614)
.++++|. +.|.+ .. ++...++ +++|+||||||||||+.+|++++.+++|+++..+.+ + ....
T Consensus 3 ~i~l~nf-~~~~~------~~-----~~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~ 69 (247)
T cd03275 3 RLELENF-KSYKG------RH-----VIGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGK 69 (247)
T ss_pred EEEEECc-cccCC------Ce-----eecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCcccc
Confidence 3677886 66742 11 2333344 999999999999999999999998888887655421 1 1110
Q ss_pred ---HHhhcceEEEcCCCCC-CCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC--------------------
Q 007178 366 ---DRIYTSMGVCPQEDLL-WETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG-------------------- 421 (614)
Q Consensus 366 ---~~~~~~ig~~~Q~~~l-~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-------------------- 421 (614)
....-.+.+..|++.. .-..++.+....+ .+.+ +....+.++++++.+|+...
T Consensus 70 ~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~-~ing--k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~ 146 (247)
T cd03275 70 PDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY-RING--KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPP 146 (247)
T ss_pred CCCceEEEEEEEEcCCCcEEEEEEEEECCceEE-EECC--EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCc
Confidence 1122234444444321 0011111111100 1112 12234566788888888420
Q ss_pred CcccccCCCCChhHHHHHHHHHHHhCC----CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhC
Q 007178 422 GVADKQAGKYSGGMKRRLSVAISLIGN----PKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALC 496 (614)
Q Consensus 422 ~~~~~~~~~LSgG~kqrl~ia~al~~~----p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~ 496 (614)
...++++.+||+|||||++||+|++.+ |+++||||||+|||+..++.+.+.|++.+ +|.+||++||+.+.. ..|
T Consensus 147 ~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~-~~~ 225 (247)
T cd03275 147 GKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFF-SKA 225 (247)
T ss_pred chhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHH-hhC
Confidence 122445689999999999999999864 99999999999999999999999999875 489999999997765 579
Q ss_pred CEEEEEeC
Q 007178 497 DRLGIFVD 504 (614)
Q Consensus 497 dri~il~~ 504 (614)
||+++|..
T Consensus 226 d~i~~~~~ 233 (247)
T cd03275 226 DALVGVYR 233 (247)
T ss_pred CeEEEEEe
Confidence 99988764
No 389
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.92 E-value=7.2e-25 Score=229.22 Aligned_cols=187 Identities=26% Similarity=0.346 Sum_probs=151.2
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhc
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 370 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~ 370 (614)
.++-.+++|.|++. .|+-=.=++..||++|++||||-||||+.++|+|.++|++|. ..+ -
T Consensus 342 lv~y~~~~k~~g~F-------~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~---------~ 401 (591)
T COG1245 342 LVEYPDLKKTYGDF-------KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED---------L 401 (591)
T ss_pred eeecchheeecCce-------EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc---------c
Confidence 46667888888742 344344567789999999999999999999999999999998 222 2
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCC
Q 007178 371 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 450 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~ 450 (614)
+++|=||.-.--.+.||++.+.-..+-. ... ..--.++++-++|. +..++++.+|||||.|||+||.||..+++
T Consensus 402 ~vSyKPQyI~~~~~gtV~~~l~~~~~~~-~~~---s~~~~ei~~pl~l~--~i~e~~v~~LSGGELQRvaIaa~L~reAD 475 (591)
T COG1245 402 KVSYKPQYISPDYDGTVEDLLRSAIRSA-FGS---SYFKTEIVKPLNLE--DLLERPVDELSGGELQRVAIAAALSREAD 475 (591)
T ss_pred eEeecceeecCCCCCcHHHHHHHhhhhh-ccc---chhHHhhcCccchH--HHHhcccccCCchhHHHHHHHHHhccccC
Confidence 4899999754445579999776433211 111 12235677788886 48899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh--cCCceEEEEcCCHHHHHhhCCEEEEEe
Q 007178 451 VVYMDEPSTGLDPASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFV 503 (614)
Q Consensus 451 vllLDEPtsgLD~~~~~~i~~~l~~~--~~g~tIil~TH~~~e~~~l~dri~il~ 503 (614)
+.+||||++-||.+.|-.+...|++. ..++|.+++.||+-.++-++||+++..
T Consensus 476 lYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 476 LYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred EEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 99999999999999999999999984 458999999999999999999987764
No 390
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.92 E-value=1.8e-24 Score=238.27 Aligned_cols=189 Identities=25% Similarity=0.338 Sum_probs=158.2
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHh
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 368 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~ 368 (614)
+..|+++|++..-+. .+..|+++|+++++||-+-|.||||||||||+|+|+|+.+--+|+|..-.
T Consensus 390 ~~~i~~~nl~l~~p~-----~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~---------- 454 (604)
T COG4178 390 DHGITLENLSLRTPD-----GQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA---------- 454 (604)
T ss_pred cceeEEeeeeEECCC-----CCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC----------
Confidence 467999999999875 35899999999999999999999999999999999999999999986541
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCccc------ccCCCCChhHHHHHHHH
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVAD------KQAGKYSGGMKRRLSVA 442 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~------~~~~~LSgG~kqrl~ia 442 (614)
-..+-|+||.|.+... |.+|-+.++..... -.++.+.++|.++||.+ +.+ +=-..||+||||||++|
T Consensus 455 ~~~~lflpQ~PY~p~G-tLre~l~YP~~~~~----~~d~~l~~vL~~vgL~~--L~~rl~~~~~W~~vLS~GEqQRlafA 527 (604)
T COG4178 455 DSALLFLPQRPYLPQG-TLREALCYPNAAPD----FSDAELVAVLHKVGLGD--LAERLDEEDRWDRVLSGGEQQRLAFA 527 (604)
T ss_pred CCceEEecCCCCCCCc-cHHHHHhCCCCCCC----CChHHHHHHHHHcCcHH--HHHHHhccCcHhhhcChhHHHHHHHH
Confidence 1347899999998777 99999987644322 22456788899999863 322 23346999999999999
Q ss_pred HHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEE
Q 007178 443 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLG 500 (614)
Q Consensus 443 ~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~ 500 (614)
|.|+++|++++|||.|++||+.+...+.+.+++.-.+.|||-++|.... ..+.++.+
T Consensus 528 RilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl-~~~h~~~l 584 (604)
T COG4178 528 RLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTL-WNFHSRQL 584 (604)
T ss_pred HHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhh-HHHHhhhe
Confidence 9999999999999999999999999999999987778999999999654 45555543
No 391
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.92 E-value=3.4e-24 Score=203.70 Aligned_cols=214 Identities=23% Similarity=0.295 Sum_probs=169.1
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHH-H
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMD-R 367 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~-~ 367 (614)
+.+|+++|+.++|+.. -+++-|+|++++.|...-++|.||||||||+|+|+|-.-.-.|.|.+.|.+.-.+.. .
T Consensus 11 ~~aievsgl~f~y~~~-----dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~ 85 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVS-----DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLE 85 (291)
T ss_pred cceEEEeccEEecccC-----CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCcccccccc
Confidence 4579999999999863 479999999999999999999999999999999999766666999999987633111 0
Q ss_pred hhcceEEEcC----------CCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHH
Q 007178 368 IYTSMGVCPQ----------EDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKR 437 (614)
Q Consensus 368 ~~~~ig~~~Q----------~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kq 437 (614)
-.....|.-- +-.+-.++++++.| |. ..|... ++-+++++.+++. ..-+.+.+|-||||
T Consensus 86 ~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mi-fg--V~g~dp----~Rre~LI~iLDId----l~WRmHkvSDGqrR 154 (291)
T KOG2355|consen 86 SSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMI-FG--VGGDDP----ERREKLIDILDID----LRWRMHKVSDGQRR 154 (291)
T ss_pred ccCceeEecccccccccccccccccccccHHHHH-hh--ccCCCh----hHhhhhhhheecc----ceEEEeeccccchh
Confidence 0111233211 22233356775543 32 223222 4567788888884 45678889999999
Q ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHH
Q 007178 438 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 515 (614)
Q Consensus 438 rl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~--~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~ 515 (614)
||.|++.|++.=++|+|||-|-.||..+|..+.+.+++. .+|.||+..||.-|=.+...++++.|++|+++..-..+.
T Consensus 155 RVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~~ 234 (291)
T KOG2355|consen 155 RVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQK 234 (291)
T ss_pred hhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccch
Confidence 999999999999999999999999999999999999874 469999999999999999999999999999998666555
Q ss_pred HHH
Q 007178 516 LKA 518 (614)
Q Consensus 516 l~~ 518 (614)
+++
T Consensus 235 i~e 237 (291)
T KOG2355|consen 235 IKE 237 (291)
T ss_pred hhh
Confidence 544
No 392
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=4.4e-24 Score=226.56 Aligned_cols=199 Identities=21% Similarity=0.258 Sum_probs=171.3
Q ss_pred CCeEEEEeEEEEcCCCCCCCcc-ceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHH
Q 007178 289 SHAIISDNLRKIYPGRDGNPEK-VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDR 367 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~-~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~ 367 (614)
.+.+++.++++.|.. +. +...+++++++.-+-.+.+|+||+||||+++++.|-..|++|.+.+.+
T Consensus 360 ~p~l~i~~V~f~y~p-----~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~--------- 425 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTP-----SEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP--------- 425 (582)
T ss_pred CCeeEEEeeeccCCC-----cchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc---------
Confidence 457999999999974 23 799999999999999999999999999999999999999999887664
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhC
Q 007178 368 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 447 (614)
Q Consensus 368 ~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~ 447 (614)
|.+|+|-.|+..=+-++.|-+--.+.....|. .++.+++.+..+||+. +.+.+.+.+||||||-||++|.+...
T Consensus 426 -r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~----~~ee~r~hl~~~Gl~g-~la~~si~~LSGGQKsrvafA~~~~~ 499 (582)
T KOG0062|consen 426 -RLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGK----TEEEIRRHLGSFGLSG-ELALQSIASLSGGQKSRVAFAACTWN 499 (582)
T ss_pred -cceecchhHhhhhHHHHHhHHHHHHHHhCCCC----CHHHHHHHHHhcCCCc-hhhhccccccCCcchhHHHHHHHhcC
Confidence 56799999997666556665543333344454 3566788899999985 78888899999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEE
Q 007178 448 NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQC 509 (614)
Q Consensus 448 ~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~ 509 (614)
+|.+|+|||||+-||..+-..+-+.|+... -.||++|||.+.+..+|+.+++.++|++.-
T Consensus 500 ~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~--GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 500 NPHLLVLDEPTNHLDRDSLGALAKALKNFN--GGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred CCcEEEecCCCccccHHHHHHHHHHHHhcC--CcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 999999999999999999988888877654 469999999999999999999999999876
No 393
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=2.1e-24 Score=229.00 Aligned_cols=202 Identities=22% Similarity=0.331 Sum_probs=152.5
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 369 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~ 369 (614)
.-|.+.|.+..||+ +..|++-++++..|.-+||+|+||+|||||||+|+. |+|.....+ ++++
T Consensus 79 ~Di~~~~fdLa~G~------k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve-----qE~~ 141 (582)
T KOG0062|consen 79 KDIHIDNFDLAYGG------KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE-----QEVR 141 (582)
T ss_pred cceeeeeeeeeecc------hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCch-----hhee
Confidence 35888999999984 689999999999999999999999999999999987 555443321 1111
Q ss_pred cceEEEcC-CCCCCCCCCHHHHHHHHhhhcCCCch-hHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhC
Q 007178 370 TSMGVCPQ-EDLLWETLTGREHLLFYGRLKNLKGP-ALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 447 (614)
Q Consensus 370 ~~ig~~~Q-~~~l~~~lTv~e~l~~~~~~~~~~~~-~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~ 447 (614)
. -+++- ...+..++++.+.+.--..+ ... +..+...++|.-+|.++ +...+++++||||.|-|+++||||..
T Consensus 142 g--~~t~~~~~~l~~D~~~~dfl~~e~~l---~~~~~l~ei~~~~L~glGFt~-emq~~pt~slSGGWrMrlaLARAlf~ 215 (582)
T KOG0062|consen 142 G--DDTEALQSVLESDTERLDFLAEEKEL---LAGLTLEEIYDKILAGLGFTP-EMQLQPTKSLSGGWRMRLALARALFA 215 (582)
T ss_pred c--cchHHHhhhhhccHHHHHHHHhhhhh---hccchHHHHHHHHHHhCCCCH-HHHhccccccCcchhhHHHHHHHHhc
Confidence 0 01111 12333444444433221111 111 22233444888999985 67889999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEE-EcCHHHH
Q 007178 448 NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQC-IGNPKEL 516 (614)
Q Consensus 448 ~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~-~g~~~~l 516 (614)
+||+|||||||+-||..+...+-+.|+..+ .|+|++|||-......|..|+-+++-|+-. .|+.++.
T Consensus 216 ~pDlLLLDEPTNhLDv~av~WLe~yL~t~~--~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~F 283 (582)
T KOG0062|consen 216 KPDLLLLDEPTNHLDVVAVAWLENYLQTWK--ITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQF 283 (582)
T ss_pred CCCEEeecCCcccchhHHHHHHHHHHhhCC--ceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHH
Confidence 999999999999999999999999988755 899999999999999999999888877654 4666554
No 394
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.90 E-value=1.4e-23 Score=243.47 Aligned_cols=211 Identities=24% Similarity=0.347 Sum_probs=178.9
Q ss_pred ccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC---CccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCC
Q 007178 309 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT---TSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETL 385 (614)
Q Consensus 309 ~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p---~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~l 385 (614)
...+++|+|.-+++|+.+-++||.|||||||++.|+|-+.- .+|+|..+|++...... ++.++|++|+|..++.|
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~--~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP--KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc--CceEEecccccccccee
Confidence 36799999999999999999999999999999999996543 35699999999865433 67899999999999999
Q ss_pred CHHHHHHHHhhhcCCC-------chh-HHHHHHHHHHHcCCCCC---CcccccCCCCChhHHHHHHHHHHHhCCCCEEEE
Q 007178 386 TGREHLLFYGRLKNLK-------GPA-LTQAVEESLKSVNLFHG---GVADKQAGKYSGGMKRRLSVAISLIGNPKVVYM 454 (614)
Q Consensus 386 Tv~e~l~~~~~~~~~~-------~~~-~~~~~~~~l~~~~L~~~---~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllL 454 (614)
||+|.|.|.++.++.. +.+ .....+.+++.+||.+- -.-|...+..|||||+||++|-+++++|++++.
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~ 284 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFW 284 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeee
Confidence 9999999999887641 111 11246789999999741 122445567999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCH-HHHHhhCCEEEEEeCCEEEEEcCHHHHHHhcC
Q 007178 455 DEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSM-EEAEALCDRLGIFVDGSLQCIGNPKELKARYG 521 (614)
Q Consensus 455 DEPtsgLD~~~~~~i~~~l~~~~--~g~tIil~TH~~-~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~ 521 (614)
||+|.|||..+.-++.+.|++.. -+.|.+++-|+. +++-.+.|.|.+|.+|+++..|+.++.+.-+.
T Consensus 285 De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe 354 (1391)
T KOG0065|consen 285 DEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFE 354 (1391)
T ss_pred ecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHH
Confidence 99999999999999999999864 377887777776 57888999999999999999999999987664
No 395
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.89 E-value=3.5e-23 Score=203.85 Aligned_cols=146 Identities=21% Similarity=0.257 Sum_probs=112.0
Q ss_pred eeeeeeEEEeCCc-EEEEECCCCCcHHHHHHHHh--------CCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCC
Q 007178 312 AVNGLSLALPSGE-CFGMLGPNGAGKTTFISMMI--------GITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLW 382 (614)
Q Consensus 312 ~l~~isl~i~~Ge-i~~LlG~NGaGKTTll~~l~--------Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~ 382 (614)
.+-++|+++.+|+ +++|.||||+|||||+|+|+ |...|....+ .++|+.|.
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~----------------~~~~~~~~---- 75 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS----------------SLPVFENI---- 75 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc----------------cCcCccEE----
Confidence 4457899999995 89999999999999999998 4433321110 12333332
Q ss_pred CCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCC
Q 007178 383 ETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLD 462 (614)
Q Consensus 383 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD 462 (614)
+..++.. +..+...+++|+||||++.++++ +.+|+++++|||++|+|
T Consensus 76 ------------------------------~~~lg~~--~~l~~~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD 122 (200)
T cd03280 76 ------------------------------FADIGDE--QSIEQSLSTFSSHMKNIARILQH-ADPDSLVLLDELGSGTD 122 (200)
T ss_pred ------------------------------EEecCch--hhhhcCcchHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCC
Confidence 1122222 13456678899999999999988 48999999999999999
Q ss_pred HHHHHHHHH-HHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEc
Q 007178 463 PASRNNLWN-VVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 511 (614)
Q Consensus 463 ~~~~~~i~~-~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g 511 (614)
+..++.++. ++++++ +|.++|++||+ .++..+||++..|++|++..++
T Consensus 123 ~~~~~~i~~~~l~~l~~~~~~vi~~tH~-~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 123 PVEGAALAIAILEELLERGALVIATTHY-GELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEECCH-HHHHHHHhcCCCeEEEEEEEec
Confidence 999999975 667654 58999999998 5667899999999999998763
No 396
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=2.3e-22 Score=208.73 Aligned_cols=193 Identities=24% Similarity=0.324 Sum_probs=155.7
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHh
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 368 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~ 368 (614)
.+.+-++|+++.|++ .++.+.+++|.|.-...++|+||||.|||||+++|.|-+.|+.|+.+-+ .
T Consensus 584 PPvLGlH~VtFgy~g-----qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn----------h 648 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYPG-----QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN----------H 648 (807)
T ss_pred CCeeecccccccCCC-----CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc----------c
Confidence 457889999999986 4789999999999999999999999999999999999999999986532 2
Q ss_pred hcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCccc-ccCCCCChhHHHHHHHHHHH
Q 007178 369 YTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVAD-KQAGKYSGGMKRRLSVAISL 445 (614)
Q Consensus 369 ~~~ig~~~Q~~--~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-~~~~~LSgG~kqrl~ia~al 445 (614)
|-+||+.-|+. .|-..-|..|.|. +...++. +.+.+.|-.+||.. +++ -.+..||||||-||++|---
T Consensus 649 rL~iG~FdQh~~E~L~~Eetp~EyLq---r~FNlpy----q~ARK~LG~fGL~s--HAHTikikdLSGGQKaRValaeLa 719 (807)
T KOG0066|consen 649 RLRIGWFDQHANEALNGEETPVEYLQ---RKFNLPY----QEARKQLGTFGLAS--HAHTIKIKDLSGGQKARVALAELA 719 (807)
T ss_pred eeeeechhhhhHHhhccccCHHHHHH---HhcCCCh----HHHHHHhhhhhhhh--ccceEeeeecCCcchHHHHHHHHh
Confidence 34699988875 3444456666554 3334443 44667888899973 444 47889999999999999999
Q ss_pred hCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEE
Q 007178 446 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSL 507 (614)
Q Consensus 446 ~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l 507 (614)
++.|+||||||||++||.++...+.+.|+++.- .||++|||-..+.+..-.++++.+-.|
T Consensus 720 l~~PDvlILDEPTNNLDIESIDALaEAIney~G--gVi~VsHDeRLi~eT~C~LwVvE~Q~i 779 (807)
T KOG0066|consen 720 LGGPDVLILDEPTNNLDIESIDALAEAINEYNG--GVIMVSHDERLIVETDCNLWVVENQGI 779 (807)
T ss_pred cCCCCEEEecCCCCCcchhhHHHHHHHHHhccC--cEEEEecccceeeecCceEEEEccCCh
Confidence 999999999999999999999999999988753 689999997766665445666665443
No 397
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.88 E-value=2.4e-22 Score=199.76 Aligned_cols=84 Identities=15% Similarity=0.268 Sum_probs=73.2
Q ss_pred cccccCCCCChhHHHHHHHHHHH----hCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-C-ceEEEEcCCHHHHHhh
Q 007178 423 VADKQAGKYSGGMKRRLSVAISL----IGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-G-RAIILTTHSMEEAEAL 495 (614)
Q Consensus 423 ~~~~~~~~LSgG~kqrl~ia~al----~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~-g-~tIil~TH~~~e~~~l 495 (614)
+.+..+.+||+|||||+.+|+++ +.+|+++++||||+|||+..++.+++.+.+. ++ | .|+|++||++.+..+.
T Consensus 119 ~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~ 198 (213)
T cd03277 119 LQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNY 198 (213)
T ss_pred ccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcc
Confidence 45778899999999998877544 5899999999999999999999999999885 44 5 5899999999888888
Q ss_pred CC--EEEEEeCCE
Q 007178 496 CD--RLGIFVDGS 506 (614)
Q Consensus 496 ~d--ri~il~~G~ 506 (614)
|| ++++|++|+
T Consensus 199 ~~~~~v~~l~~g~ 211 (213)
T cd03277 199 HEKMTVLCVYNGP 211 (213)
T ss_pred cCceEEEEEecCc
Confidence 87 788899886
No 398
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.87 E-value=5.5e-22 Score=207.74 Aligned_cols=192 Identities=24% Similarity=0.357 Sum_probs=141.6
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCee-------------CCCcHHHhh-c--ceEEEcCCC---
Q 007178 319 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD-------------IRTDMDRIY-T--SMGVCPQED--- 379 (614)
Q Consensus 319 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~-------------i~~~~~~~~-~--~ig~~~Q~~--- 379 (614)
..++|+++||+||||-||||.+|+|+|.++|.=|+- ++.+ +.+-..++. . ++..=||.-
T Consensus 96 ~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~--~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~i 173 (591)
T COG1245 96 TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLI 173 (591)
T ss_pred CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC--CCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHH
Confidence 347899999999999999999999999999988863 2211 100000111 1 122234432
Q ss_pred -CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCC
Q 007178 380 -LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPS 458 (614)
Q Consensus 380 -~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPt 458 (614)
..+.. ||.|-|.- .+.+-..+++.+.++|. +..|+.+++||||+.||++||.|+..+++++++||||
T Consensus 174 Pk~~KG-~v~elLk~---------~de~g~~devve~l~L~--nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEps 241 (591)
T COG1245 174 PKVVKG-KVGELLKK---------VDERGKFDEVVERLGLE--NVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPS 241 (591)
T ss_pred HHHhcc-hHHHHHHh---------hhhcCcHHHHHHHhcch--hhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCc
Confidence 22222 56654431 12223578899999997 4899999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcC-CceEEEEcCCHHHHHhhCCEEEEEeC-----CEEEEEcCHHHHHHhcCCcE
Q 007178 459 TGLDPASRNNLWNVVKRAKQ-GRAIILTTHSMEEAEALCDRLGIFVD-----GSLQCIGNPKELKARYGGSY 524 (614)
Q Consensus 459 sgLD~~~~~~i~~~l~~~~~-g~tIil~TH~~~e~~~l~dri~il~~-----G~l~~~g~~~~l~~~~~~~~ 524 (614)
|-||...|-....+|+++.+ +++||++.||+.-.+-++|-|.|+-. |-+-.--+...-.+.|-+||
T Consensus 242 SyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~YG~pg~YGvvs~p~svr~gIN~yL~Gy 313 (591)
T COG1245 242 SYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILYGEPGVYGVVSKPKSVRVGINEYLKGY 313 (591)
T ss_pred ccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEecCCccceEeccchHHHHHHHHHHhcc
Confidence 99999999999999999754 89999999999999999999988854 33322223333345555555
No 399
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.86 E-value=7.6e-21 Score=204.46 Aligned_cols=201 Identities=21% Similarity=0.254 Sum_probs=157.7
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHh
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 368 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~ 368 (614)
+.+|++++++..=+.. +..+++|+||+|++|+-+-|.||||+|||+|+|+++|+.+-++|++..-...-.
T Consensus 431 Dn~i~~e~v~l~tPt~----g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~------ 500 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPTN----GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP------ 500 (659)
T ss_pred cceEEeeeeeecCCCC----CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC------
Confidence 4689999999988752 357899999999999999999999999999999999999999999976543211
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhh-cCCCchhHHHHHHHHHHHcCCCCC----Ccccc-----cCCCCChhHHHH
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRL-KNLKGPALTQAVEESLKSVNLFHG----GVADK-----QAGKYSGGMKRR 438 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~----~~~~~-----~~~~LSgG~kqr 438 (614)
+.+-|+||.|..-.+ |.||.+.++..- ....+...++++.+.|+.++|.+- +-.|+ -...||+|||||
T Consensus 501 -~~lfflPQrPYmt~G-TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQR 578 (659)
T KOG0060|consen 501 -KDLFFLPQRPYMTLG-TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQR 578 (659)
T ss_pred -CceEEecCCCCcccc-chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHH
Confidence 458899999987666 999999887321 111122234567777777777530 01121 124699999999
Q ss_pred HHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeC
Q 007178 439 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVD 504 (614)
Q Consensus 439 l~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~ 504 (614)
+++||-+.++|++-+|||-||++|......+.+.+++ .|.|.|-++|.-..- ..=|.++-|+.
T Consensus 579 La~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~--~giT~iSVgHRkSL~-kfHd~~L~~~g 641 (659)
T KOG0060|consen 579 LAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE--MGITFISVGHRKSLW-KFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH--cCCeEEEeccHHHHH-hhhhEEEEecC
Confidence 9999999999999999999999999999988888764 589999999998764 45677776654
No 400
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.85 E-value=1.5e-21 Score=195.11 Aligned_cols=151 Identities=20% Similarity=0.187 Sum_probs=119.5
Q ss_pred cceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceE-EEcCCCCCCCCCCHH
Q 007178 310 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMG-VCPQEDLLWETLTGR 388 (614)
Q Consensus 310 ~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig-~~~Q~~~l~~~lTv~ 388 (614)
+.+.+|++++.++|++++|.||||+||||++++++- ..+..++| ++|.+....+
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~--------------------~~~la~~g~~vpa~~~~~~----- 71 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV--------------------IVLMAQIGCFVPCDSADIP----- 71 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH--------------------HHHHHHhCCCcCcccEEEe-----
Confidence 468999999999999999999999999999999981 12234456 6666543222
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH--hCCCCEEEEeCC---CCCCCH
Q 007178 389 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL--IGNPKVVYMDEP---STGLDP 463 (614)
Q Consensus 389 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al--~~~p~vllLDEP---tsgLD~ 463 (614)
.++++++.+++. +.....+|.|+++++.+++++ +.+|+++||||| |+++|+
T Consensus 72 -------------------~~~~il~~~~l~-----d~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~ 127 (222)
T cd03285 72 -------------------IVDCILARVGAS-----DSQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDG 127 (222)
T ss_pred -------------------ccceeEeeeccc-----cchhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHH
Confidence 123456667774 234678999999999999999 899999999999 999999
Q ss_pred HHHHHHHHHHHHh--cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcC
Q 007178 464 ASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 512 (614)
Q Consensus 464 ~~~~~i~~~l~~~--~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~ 512 (614)
.++.. .+++.+ +.|.++|++||+ .++.++||++..+++|++...++
T Consensus 128 ~~~~~--~il~~l~~~~~~~vlisTH~-~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 128 FGLAW--AIAEYIATQIKCFCLFATHF-HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HHHHH--HHHHHHHhcCCCeEEEEech-HHHHHHhhcCCCeEEEEEEEEEe
Confidence 98853 344443 247899999996 77888999999999999988764
No 401
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=6.3e-21 Score=197.11 Aligned_cols=79 Identities=23% Similarity=0.221 Sum_probs=70.7
Q ss_pred cCCCCChhHHHHHHHHHHHhC----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEE
Q 007178 427 QAGKYSGGMKRRLSVAISLIG----NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIF 502 (614)
Q Consensus 427 ~~~~LSgG~kqrl~ia~al~~----~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il 502 (614)
...+||||||||+++|++++. +|+++++||||+|||+..++.+.+.+++..++.|+|++||+++.+ .+||++++|
T Consensus 167 ~~~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~-~~~d~~~~l 245 (276)
T cd03241 167 LAKIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVA-AMADNHFLV 245 (276)
T ss_pred hhhhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHH-HhcCcEEEE
Confidence 344599999999999987654 999999999999999999999999999877789999999999865 689999999
Q ss_pred eCCE
Q 007178 503 VDGS 506 (614)
Q Consensus 503 ~~G~ 506 (614)
.+|.
T Consensus 246 ~~~~ 249 (276)
T cd03241 246 EKEV 249 (276)
T ss_pred EEec
Confidence 8874
No 402
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.84 E-value=3.9e-21 Score=189.08 Aligned_cols=147 Identities=17% Similarity=0.164 Sum_probs=109.4
Q ss_pred cceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHH
Q 007178 310 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 389 (614)
Q Consensus 310 ~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e 389 (614)
+.+.+|++++. |++++|+||||||||||+|+|+|... +...|.++... ++.+|.+.+|+.+|+.|
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~--------~~~~q~~~l~~~~~~~d 78 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS--------SFELPPVKIFTSIRVSD 78 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC--------ccCcccceEEEeccchh
Confidence 45788887775 79999999999999999999988543 22355554221 35677888999999999
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHH
Q 007178 390 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 469 (614)
Q Consensus 390 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i 469 (614)
|+.+.... ...+ .+++.++++.+++ .+|+++|+|||++|+|+..+..+
T Consensus 79 ~l~~~~s~---~~~e-~~~~~~iL~~~~~----------------------------~~p~llllDEp~~glD~~~~~~l 126 (199)
T cd03283 79 DLRDGISY---FYAE-LRRLKEIVEKAKK----------------------------GEPVLFLLDEIFKGTNSRERQAA 126 (199)
T ss_pred ccccccCh---HHHH-HHHHHHHHHhccC----------------------------CCCeEEEEecccCCCCHHHHHHH
Confidence 99774321 1222 2456666666541 79999999999999999999876
Q ss_pred H-HHHHHh-cCCceEEEEcCCHHHHHhh--CCEEEEEe
Q 007178 470 W-NVVKRA-KQGRAIILTTHSMEEAEAL--CDRLGIFV 503 (614)
Q Consensus 470 ~-~~l~~~-~~g~tIil~TH~~~e~~~l--~dri~il~ 503 (614)
. .+++++ ++|.++|++||+++++..+ .+++..++
T Consensus 127 ~~~ll~~l~~~~~tiiivTH~~~~~~~~~~~~~v~~~~ 164 (199)
T cd03283 127 SAAVLKFLKNKNTIGIISTHDLELADLLDLDSAVRNYH 164 (199)
T ss_pred HHHHHHHHHHCCCEEEEEcCcHHHHHhhhcCCCeEEEE
Confidence 4 567765 4589999999999998876 45554443
No 403
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.83 E-value=9.4e-21 Score=196.32 Aligned_cols=201 Identities=26% Similarity=0.338 Sum_probs=159.9
Q ss_pred CeEEEEeEEEEcCCC--------------------CCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCC---
Q 007178 290 HAIISDNLRKIYPGR--------------------DGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI--- 346 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~--------------------~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl--- 346 (614)
..+.++|++|.|.+. .......+++|+||++++|+++++.|++||||||+++||.|.
T Consensus 356 ~p~~~~~v~k~faS~ld~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~ 435 (593)
T COG2401 356 GPIKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKG 435 (593)
T ss_pred CccccceeeeeeeeeeecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhc
Confidence 357788888877531 111246799999999999999999999999999999999994
Q ss_pred -----CCCCccEEEEcCeeCCCcHHHhhcceEEEcCC-CCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC
Q 007178 347 -----TRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQE-DLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH 420 (614)
Q Consensus 347 -----~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~-~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~ 420 (614)
++|+||.|.+--..+ -+.+|-. ..-|..-|+.||+.- ..| + -....++|...|+.+
T Consensus 436 ~~ee~y~p~sg~v~vp~nt~----------~a~iPge~Ep~f~~~tilehl~s---~tG----D-~~~AveILnraGlsD 497 (593)
T COG2401 436 RGEEKYRPDSGKVEVPKNTV----------SALIPGEYEPEFGEVTILEHLRS---KTG----D-LNAAVEILNRAGLSD 497 (593)
T ss_pred ccccccCCCCCceeccccch----------hhccCcccccccCchhHHHHHhh---ccC----c-hhHHHHHHHhhccch
Confidence 689999997643221 1345543 222346688888752 111 1 134567999999986
Q ss_pred CCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHhh-CC
Q 007178 421 GGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEAL-CD 497 (614)
Q Consensus 421 ~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~--~g~tIil~TH~~~e~~~l-~d 497 (614)
.-+..++.++||-|||.|+.||.++..+|.+++.||--|-||+.+...+..-|.++. .|.|.+++||+.|...++ -|
T Consensus 498 AvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD 577 (593)
T COG2401 498 AVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPD 577 (593)
T ss_pred hhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCc
Confidence 545677889999999999999999999999999999999999999999999999864 599999999999999999 78
Q ss_pred EEEEEeCCEEE
Q 007178 498 RLGIFVDGSLQ 508 (614)
Q Consensus 498 ri~il~~G~l~ 508 (614)
+++...-|+..
T Consensus 578 ~li~vgYg~v~ 588 (593)
T COG2401 578 TLILVGYGKVP 588 (593)
T ss_pred eeEEeeccccc
Confidence 88888777653
No 404
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.83 E-value=7.2e-20 Score=176.93 Aligned_cols=73 Identities=26% Similarity=0.300 Sum_probs=67.1
Q ss_pred CChhHHHHHHHHHHHh----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeC
Q 007178 431 YSGGMKRRLSVAISLI----GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVD 504 (614)
Q Consensus 431 LSgG~kqrl~ia~al~----~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~ 504 (614)
||+|||||+++|++++ .+|+++++|||++|||+.+++.+.+.+++. ++|+++|++||+++.+. .|||++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~-~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFE-NADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh-hCCeEEEEEE
Confidence 9999999999999996 699999999999999999999999999886 45799999999998775 7999998865
No 405
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.82 E-value=8.6e-20 Score=173.79 Aligned_cols=138 Identities=24% Similarity=0.288 Sum_probs=102.7
Q ss_pred eeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEE-EcCCCCCCCCCCHHHHHH
Q 007178 314 NGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGV-CPQEDLLWETLTGREHLL 392 (614)
Q Consensus 314 ~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~-~~Q~~~l~~~lTv~e~l~ 392 (614)
...+..+.++.+..|+|||||||||+++.+....-...|.+... .+. +.|+ +|+...-+
T Consensus 12 ~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~-~~~---------~~g~~~~~~~~~~---------- 71 (162)
T cd03227 12 VPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRR-SGV---------KAGCIVAAVSAEL---------- 71 (162)
T ss_pred eccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhcc-Ccc---------cCCCcceeeEEEE----------
Confidence 33455566667999999999999999999887766655554431 110 1111 22221111
Q ss_pred HHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhC----CCCEEEEeCCCCCCCHHHHHH
Q 007178 393 FYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG----NPKVVYMDEPSTGLDPASRNN 468 (614)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~----~p~vllLDEPtsgLD~~~~~~ 468 (614)
+. ...+||+||+||+++|++|.. +|+++++|||++|+|+..++.
T Consensus 72 -------------------------i~-------~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~ 119 (162)
T cd03227 72 -------------------------IF-------TRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQA 119 (162)
T ss_pred -------------------------eh-------heeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 10 001299999999999999986 789999999999999999999
Q ss_pred HHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeC
Q 007178 469 LWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVD 504 (614)
Q Consensus 469 i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~ 504 (614)
+.+.+.+. ++|.++|++||+.+.++ .+||++.|..
T Consensus 120 l~~~l~~~~~~~~~vii~TH~~~~~~-~~d~~~~l~~ 155 (162)
T cd03227 120 LAEAILEHLVKGAQVIVITHLPELAE-LADKLIHIKK 155 (162)
T ss_pred HHHHHHHHHhcCCEEEEEcCCHHHHH-hhhhEEEEEE
Confidence 99999875 45889999999999886 5899998864
No 406
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.80 E-value=3.8e-20 Score=182.53 Aligned_cols=151 Identities=17% Similarity=0.197 Sum_probs=104.3
Q ss_pred eEEEeCCcEEEEECCCCCcHHHHHHHHhCCC-CCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHh
Q 007178 317 SLALPSGECFGMLGPNGAGKTTFISMMIGIT-RTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYG 395 (614)
Q Consensus 317 sl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~-~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~ 395 (614)
++++.+|++++|.|||||||||++++|++.. .+..|... . ..+..++++.|. +..
T Consensus 23 ~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~-~---------~~~~~i~~~dqi---~~~----------- 78 (202)
T cd03243 23 DINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFV-P---------AESASIPLVDRI---FTR----------- 78 (202)
T ss_pred eEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCc-c---------ccccccCCcCEE---EEE-----------
Confidence 4556689999999999999999999999543 22222210 0 001123332221 111
Q ss_pred hhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHH-HHHH
Q 007178 396 RLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLW-NVVK 474 (614)
Q Consensus 396 ~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~-~~l~ 474 (614)
++.. +..+...+.+|+++|| ++.+.+++.+|+++|+||||+|+||..+..+. .+++
T Consensus 79 --------------------~~~~--d~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~ 135 (202)
T cd03243 79 --------------------IGAE--DSISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLE 135 (202)
T ss_pred --------------------ecCc--ccccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 1111 1123345567777765 66667888999999999999999999988775 4566
Q ss_pred Hh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHH
Q 007178 475 RA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 515 (614)
Q Consensus 475 ~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~ 515 (614)
.+ +.+.++|++||+.+.++ .|+++..+++|++...+...+
T Consensus 136 ~l~~~~~~vi~~tH~~~~~~-~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 136 HLLEKGCRTLFATHFHELAD-LPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred HHHhcCCeEEEECChHHHHH-HhhcCCCeEEEEEEEEecCCe
Confidence 55 45899999999987766 688999999999998886633
No 407
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=1.9e-18 Score=178.04 Aligned_cols=190 Identities=20% Similarity=0.301 Sum_probs=119.8
Q ss_pred eeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC----------------cc-----------------------
Q 007178 312 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT----------------SG----------------------- 352 (614)
Q Consensus 312 ~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~----------------sG----------------------- 352 (614)
.+++.++++.+| +.+|+|||||||||++.+|.-+.... ..
T Consensus 11 ~~~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~~~~~~r~~~~~~~i~~~~~~~~v~~~f~~~~~~~~i~~~~~~~~ 89 (270)
T cd03242 11 NYAELELEFEPG-VTVLVGENAQGKTNLLEAISLLATGKSHRTSRDKELIRWGAEEAKISAVLERQGGELALELTIRSGG 89 (270)
T ss_pred CcceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHhcCCCCEEEEEEEEeCCCeEEEEEEEEcCC
Confidence 455677888776 79999999999999998876543211 10
Q ss_pred --EEEEcCeeCCCcHHHh---hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhH---HHHHHHHHHHc-----CCC
Q 007178 353 --TAYVQGLDIRTDMDRI---YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPAL---TQAVEESLKSV-----NLF 419 (614)
Q Consensus 353 --~i~i~G~~i~~~~~~~---~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~---~~~~~~~l~~~-----~L~ 419 (614)
.+++||..+.. ..++ ...+.+.|++..+.. .+..+...|.-++-+...++. .++.+++++.. |-.
T Consensus 90 ~~~~~ing~~~~~-l~~l~~~l~~i~~~~~~~~l~~-~~p~~rr~~lD~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~ 167 (270)
T cd03242 90 GRKARLNGIKVRR-LSDLLGVLNAVWFAPEDLELVK-GSPADRRRFLDRLLGQLEPAYAHVLSEYQKALRQRNALLKGPH 167 (270)
T ss_pred ceEEEECCeeccC-HHHHhCcCcEEEEecchhhhhc-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 12233333221 1111 123555666655552 245555555433322111111 11122222211 111
Q ss_pred CCCc-----ccccCCCCChhHHHHHHHHHHHh---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEE
Q 007178 420 HGGV-----ADKQAGKYSGGMKRRLSVAISLI---------GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILT 485 (614)
Q Consensus 420 ~~~~-----~~~~~~~LSgG~kqrl~ia~al~---------~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~ 485 (614)
.++. .......+|+||||++++|++|+ ++|+++++||||++||+..++.+++.+++.. .++++
T Consensus 168 ~d~l~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~ii~ 244 (270)
T cd03242 168 RDDLLFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QTFVT 244 (270)
T ss_pred hhheEEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CEEEE
Confidence 0000 12235568999999999999985 8999999999999999999999999997653 57788
Q ss_pred cCCHHHHHhhC---CEEEEEeCCEE
Q 007178 486 THSMEEAEALC---DRLGIFVDGSL 507 (614)
Q Consensus 486 TH~~~e~~~l~---dri~il~~G~l 507 (614)
+|+.+++..+| ++++.+++|++
T Consensus 245 ~~~~~~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 245 TTDLADFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred eCCchhccchhccCccEEEEeCcEE
Confidence 88888888888 78999999986
No 408
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.79 E-value=3.2e-19 Score=176.04 Aligned_cols=142 Identities=18% Similarity=0.262 Sum_probs=109.4
Q ss_pred cceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHH
Q 007178 310 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 389 (614)
Q Consensus 310 ~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e 389 (614)
+.+.+|+++++++|++++|.||||+||||++++++|+. +..++|+ |- ++.+..+++.|
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~--------------------~la~~G~-~v-pa~~~~l~~~d 73 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA--------------------IMAQIGC-FV-PAEYATLPIFN 73 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH--------------------HHHHcCC-Cc-chhhcCccChh
Confidence 57999999999999999999999999999999999874 2233442 11 34445566666
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHH
Q 007178 390 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 469 (614)
Q Consensus 390 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i 469 (614)
++. ..++.. +..++..+++|+|++|+ +.+.+++.+|+++|+|||++|+||..+..+
T Consensus 74 ~I~---------------------~~~~~~--d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l 129 (204)
T cd03282 74 RLL---------------------SRLSND--DSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAI 129 (204)
T ss_pred hee---------------------EecCCc--cccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHH
Confidence 652 233443 23567788999999975 566778999999999999999999876665
Q ss_pred -HHHHHHh-cCCceEEEEcCCHHHHHhhCC
Q 007178 470 -WNVVKRA-KQGRAIILTTHSMEEAEALCD 497 (614)
Q Consensus 470 -~~~l~~~-~~g~tIil~TH~~~e~~~l~d 497 (614)
+.+++.+ +.|.++|++||+.+.++.+++
T Consensus 130 ~~~il~~l~~~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 130 SLAILECLIKKESTVFFATHFRDIAAILGN 159 (204)
T ss_pred HHHHHHHHHhcCCEEEEECChHHHHHHhhc
Confidence 4556665 468999999999999987764
No 409
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.79 E-value=8.5e-19 Score=205.42 Aligned_cols=131 Identities=24% Similarity=0.390 Sum_probs=111.9
Q ss_pred CCCCHHHHHHHHhhhcCCCc----------hhHHHHHHHHHHHcCCCCCCc-ccccCCCCChhHHHHHHHHHHHhCCC--
Q 007178 383 ETLTGREHLLFYGRLKNLKG----------PALTQAVEESLKSVNLFHGGV-ADKQAGKYSGGMKRRLSVAISLIGNP-- 449 (614)
Q Consensus 383 ~~lTv~e~l~~~~~~~~~~~----------~~~~~~~~~~l~~~~L~~~~~-~~~~~~~LSgG~kqrl~ia~al~~~p-- 449 (614)
-.|||.|.+.|...+ +.+. +++.++++ .++.+||.. + .++++.+||||||||+.||+||..+|
T Consensus 435 ~~~~v~~~~~~~~~~-~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~--l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~ 510 (943)
T PRK00349 435 SELSIGEALEFFENL-KLSEQEAKIAEPILKEIRERLK-FLVDVGLDY--LTLSRSAGTLSGGEAQRIRLATQIGSGLTG 510 (943)
T ss_pred hcCcHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHH-HhhccccCC--CCCCCchhhCCHHHHHHHHHHHHHhhCCCC
Confidence 358999998886554 2222 13445554 788899962 4 69999999999999999999999997
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEE------eCCEEEEEcCHHHHHH
Q 007178 450 KVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIF------VDGSLQCIGNPKELKA 518 (614)
Q Consensus 450 ~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il------~~G~l~~~g~~~~l~~ 518 (614)
+++||||||+||||..+++++++|++++ +|.|||++||+++++. .||||++| ++|++++.|+++++.+
T Consensus 511 ~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~-~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 511 VLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIR-AADYIVDIGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred cEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEeccccCCCCCEEeeccCHHHHhc
Confidence 9999999999999999999999999975 5999999999999987 59999999 9999999999999854
No 410
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.79 E-value=1.8e-19 Score=191.36 Aligned_cols=180 Identities=23% Similarity=0.362 Sum_probs=140.5
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 369 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~ 369 (614)
..|.++|+-..-+. ...++..+||.|++|--.-|+||||||||+|+|+|.|+.+...|...+-- +
T Consensus 480 ~gI~lenIpvItP~-----~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~----------~ 544 (728)
T KOG0064|consen 480 NGIILENIPVITPA-----GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPR----------P 544 (728)
T ss_pred cceEEecCceeccC-----cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCC----------C
Confidence 35889999888775 35699999999999999999999999999999999999988777654321 2
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhh-----hcCCCchhHHHHHHHHHHHcCCCCCCcccccC---------CCCChhH
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGR-----LKNLKGPALTQAVEESLKSVNLFHGGVADKQA---------GKYSGGM 435 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~-----~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~---------~~LSgG~ 435 (614)
.+|-|+||.|..- .-|.||.+.++-. -+|.+. +..+.+|+.+.|++ ...+-. .-||||+
T Consensus 545 ~~mFYIPQRPYms-~gtlRDQIIYPdS~e~~~~kg~~d----~dL~~iL~~v~L~~--i~qr~~g~da~~dWkd~LsgGe 617 (728)
T KOG0064|consen 545 NNIFYIPQRPYMS-GGTLRDQIIYPDSSEQMKRKGYTD----QDLEAILDIVHLEH--ILQREGGWDAVRDWKDVLSGGE 617 (728)
T ss_pred cceEeccCCCccC-cCcccceeecCCcHHHHHhcCCCH----HHHHHHHHHhhHHH--HHHhccChhhhccHHhhccchH
Confidence 3489999998765 3477777766432 234333 34556666666642 222222 3599999
Q ss_pred HHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHH
Q 007178 436 KRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAE 493 (614)
Q Consensus 436 kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~ 493 (614)
|||+.+||.+.++|+..+|||-||++.+.....+.+..+. -|.+.|-+||......
T Consensus 618 kQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~--~gi~llsithrpslwk 673 (728)
T KOG0064|consen 618 KQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD--AGISLLSITHRPSLWK 673 (728)
T ss_pred HHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh--cCceEEEeecCccHHH
Confidence 9999999999999999999999999999999888877653 4889999999987654
No 411
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.79 E-value=3.7e-18 Score=208.04 Aligned_cols=200 Identities=18% Similarity=0.196 Sum_probs=150.1
Q ss_pred ceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHh----------CCCCCCccEEEEcCeeCCCc-----------HHHhh
Q 007178 311 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMI----------GITRTTSGTAYVQGLDIRTD-----------MDRIY 369 (614)
Q Consensus 311 ~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~----------Gl~~p~sG~i~i~G~~i~~~-----------~~~~~ 369 (614)
.=|+|++.+|+-|..+++.|.+|||||||++-.. |.. .-+--|.|+-.+|... .+.+|
T Consensus 1504 nNLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~-~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR 1582 (1809)
T PRK00635 1504 HTIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPS-VFSEIIFLDSHPQISSQRSDISTYFDIAPSLR 1582 (1809)
T ss_pred ccCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhccccc-ccCcEEEEeCCCCCCCCCCchhhhhhhHHHHH
Confidence 4689999999999999999999999999997443 222 1233467776665211 11111
Q ss_pred cc--------------------------------------eEEEcCCC-----------------CCC--------CCCC
Q 007178 370 TS--------------------------------------MGVCPQED-----------------LLW--------ETLT 386 (614)
Q Consensus 370 ~~--------------------------------------ig~~~Q~~-----------------~l~--------~~lT 386 (614)
+- +.|+|.-. .-| -+||
T Consensus 1583 ~lFA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mt 1662 (1809)
T PRK00635 1583 NFYASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTP 1662 (1809)
T ss_pred HHHhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCC
Confidence 10 11222100 001 1478
Q ss_pred HHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCC---CCEEEEeCCCCCCCH
Q 007178 387 GREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN---PKVVYMDEPSTGLDP 463 (614)
Q Consensus 387 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~---p~vllLDEPtsgLD~ 463 (614)
|.|-+.|+... +.+ .+.-+.|+.+||.- -...++..+|||||.||+-+|.-|..+ +.+++|||||+||++
T Consensus 1663 v~ea~~~F~~~-----~~i-~~~L~~L~~vGLgY-l~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~ 1735 (1809)
T PRK00635 1663 IEEVAETFPFL-----KKI-QKPLQALIDNGLGY-LPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDN 1735 (1809)
T ss_pred HHHHHHHhhcc-----HHH-HHHHHHHHHcCCCe-eeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCH
Confidence 88888887431 222 33456888999963 346899999999999999999999865 789999999999999
Q ss_pred HHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEE------eCCEEEEEcCHHHHHHh
Q 007178 464 ASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF------VDGSLQCIGNPKELKAR 519 (614)
Q Consensus 464 ~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il------~~G~l~~~g~~~~l~~~ 519 (614)
...+.+.++++++ .+|.|||++.||++.+.. ||+|+=| ..|+|++.|+|+++.+.
T Consensus 1736 ~d~~~Ll~~l~~L~~~g~tvivieH~~~~i~~-aD~iidlgp~gG~~GG~iva~Gtp~~i~~~ 1797 (1809)
T PRK00635 1736 QQKSALLVQLRTLVSLGHSVIYIDHDPALLKQ-ADYLIEMGPGSGKTGGKILFSGPPKDISAS 1797 (1809)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHh-CCEEEEcCCCcccCCCEEEEEeCHHHHhhC
Confidence 9999999999997 579999999999999887 9999887 45899999999999764
No 412
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.78 E-value=2.1e-18 Score=201.73 Aligned_cols=131 Identities=27% Similarity=0.382 Sum_probs=109.5
Q ss_pred CCCHHHHHHHHhhhcCCCc---------hhHHHHHHHHHHHcCCCCCCc-ccccCCCCChhHHHHHHHHHHHhCCC--CE
Q 007178 384 TLTGREHLLFYGRLKNLKG---------PALTQAVEESLKSVNLFHGGV-ADKQAGKYSGGMKRRLSVAISLIGNP--KV 451 (614)
Q Consensus 384 ~lTv~e~l~~~~~~~~~~~---------~~~~~~~~~~l~~~~L~~~~~-~~~~~~~LSgG~kqrl~ia~al~~~p--~v 451 (614)
.||+.|.+.|...+.-... ++..+++ +.++.+||.. + .++++.+|||||+||+.||+||+.+| ++
T Consensus 434 ~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~--l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~l 510 (924)
T TIGR00630 434 ELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDY--LTLSRAAGTLSGGEAQRIRLATQIGSGLTGVL 510 (924)
T ss_pred cCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccc--cccCCCcCcCCHHHHHHHHHHHHHhhCCCCcE
Confidence 5899999888876531110 1222333 2467788852 3 68999999999999999999999986 89
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEE------eCCEEEEEcCHHHHHH
Q 007178 452 VYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIF------VDGSLQCIGNPKELKA 518 (614)
Q Consensus 452 llLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il------~~G~l~~~g~~~~l~~ 518 (614)
+||||||+||||..++.++++|++++ +|.|||+++|+++++. .|||+++| ++|+++..|+++++..
T Consensus 511 lILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~-~aD~vi~LgpgaG~~~G~Iv~~g~~~el~~ 583 (924)
T TIGR00630 511 YVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIR-AADYVIDIGPGAGIHGGEVVASGTPEEILA 583 (924)
T ss_pred EEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh-hCCEEEEecccccCCCCEEeeccCHHHHhc
Confidence 99999999999999999999999974 6999999999999987 89999999 9999999999999853
No 413
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.77 E-value=4.7e-18 Score=189.12 Aligned_cols=128 Identities=24% Similarity=0.363 Sum_probs=108.7
Q ss_pred CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCC---CEEEEeCCCCC
Q 007178 384 TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP---KVVYMDEPSTG 460 (614)
Q Consensus 384 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p---~vllLDEPtsg 460 (614)
+|||.|-..|+.... .+.+ .-+.|..+||.- -...+++.+|||||.||+-+|.-|.... .+.||||||+|
T Consensus 783 ~MTveEA~~FF~~~p-----~I~r-kLqtL~dVGLgY-i~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTG 855 (935)
T COG0178 783 DMTVEEALEFFEAIP-----KIAR-KLQTLVDVGLGY-IKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTG 855 (935)
T ss_pred hccHHHHHHHHhcch-----HHHH-HHHHHHHcCcce-EecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCC
Confidence 478899888886542 2333 345677799963 3468899999999999999999999887 99999999999
Q ss_pred CCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEE------eCCEEEEEcCHHHHHHh
Q 007178 461 LDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF------VDGSLQCIGNPKELKAR 519 (614)
Q Consensus 461 LD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il------~~G~l~~~g~~~~l~~~ 519 (614)
|-..-.+++.+.|+++ .+|.|||++.|+||.+. .||.|+=| ..|+|++.|+|+++.+.
T Consensus 856 LH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk-~AD~IIDLGPeGG~~GG~iva~GTPeeva~~ 920 (935)
T COG0178 856 LHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIK-TADWIIDLGPEGGDGGGEIVASGTPEEVAKV 920 (935)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecccceEe-ecCEEEEcCCCCCCCCceEEEecCHHHHHhC
Confidence 9999999999999996 67999999999999876 59999766 56899999999999874
No 414
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=8.7e-19 Score=182.27 Aligned_cols=220 Identities=20% Similarity=0.301 Sum_probs=164.3
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhC--CCCCCccEEEEcCeeCCCc-HHH
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG--ITRTTSGTAYVQGLDIRTD-MDR 367 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~G--l~~p~sG~i~i~G~~i~~~-~~~ 367 (614)
.|.++|.+.+-.+ +..+.|.||.|-.|..+||+||||-|||||++-|+. +--|..=.+.++.+.+..+ ...
T Consensus 264 DIKiEnF~ISA~G------k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~A 337 (807)
T KOG0066|consen 264 DIKIENFDISAQG------KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSA 337 (807)
T ss_pred cceeeeeeeeccc------ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHH
Confidence 4788888877653 568999999999999999999999999999999976 3334445677777665321 000
Q ss_pred -------hhcceEEEcCCCC-----CCCCCCHHHHHHH-HhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChh
Q 007178 368 -------IYTSMGVCPQEDL-----LWETLTGREHLLF-YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG 434 (614)
Q Consensus 368 -------~~~~ig~~~Q~~~-----l~~~lTv~e~l~~-~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG 434 (614)
-.+++.++-.... --.+.|+.|-+.- +..++.+.....+.++..+|.-+|.+. +..+++....|||
T Consensus 338 i~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFsk-EMQ~rPt~kFSGG 416 (807)
T KOG0066|consen 338 IDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSK-EMQERPTTKFSGG 416 (807)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCCh-hHhcCCccccCCc
Confidence 0011121111111 1134677777653 445555545556678889999999985 6789999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEE-cCH
Q 007178 435 MKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCI-GNP 513 (614)
Q Consensus 435 ~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~-g~~ 513 (614)
.|-|+++||||...|-+|.|||||+.||-.+.-.+-+.|+.. .+|.+++|||-...+..|+.|+-+++-++... |+.
T Consensus 417 WRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW--kKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYrGNY 494 (807)
T KOG0066|consen 417 WRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYRGNY 494 (807)
T ss_pred eeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh--hheeEEEecccchHHHHHHHHhhhhhhhhhhhcchH
Confidence 999999999999999999999999999999887777777654 36999999999999999999999999888653 554
Q ss_pred HHHHHh
Q 007178 514 KELKAR 519 (614)
Q Consensus 514 ~~l~~~ 519 (614)
.-++..
T Consensus 495 ~~FKKm 500 (807)
T KOG0066|consen 495 TLFKKM 500 (807)
T ss_pred HHHHHH
Confidence 444433
No 415
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.72 E-value=2.3e-17 Score=168.95 Aligned_cols=141 Identities=18% Similarity=0.213 Sum_probs=104.0
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC--cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCC
Q 007178 324 ECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT--DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK 401 (614)
Q Consensus 324 ei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~--~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~ 401 (614)
..++|+||||||||||+++|+|+++|++|++.++|+++.. ...++.+.++++||++ +.+.++|.||..-
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~k-------- 182 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCPK-------- 182 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccchH--------
Confidence 6789999999999999999999999999999999999853 3345556778889965 4556666664210
Q ss_pred chhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCce
Q 007178 402 GPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRA 481 (614)
Q Consensus 402 ~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~t 481 (614)
.+ |+ ..++ ...+|+++++|||++ ++.+..+++.+++|.+
T Consensus 183 -------~~-----------------------~~---~~~i--~~~~P~villDE~~~------~e~~~~l~~~~~~G~~ 221 (270)
T TIGR02858 183 -------AE-----------------------GM---MMLI--RSMSPDVIVVDEIGR------EEDVEALLEALHAGVS 221 (270)
T ss_pred -------HH-----------------------HH---HHHH--HhCCCCEEEEeCCCc------HHHHHHHHHHHhCCCE
Confidence 00 11 2223 336999999999974 3445555555667999
Q ss_pred EEEEcCCHHH--H-----------HhhCCEEEEEeCCEEEEEcCHHHH
Q 007178 482 IILTTHSMEE--A-----------EALCDRLGIFVDGSLQCIGNPKEL 516 (614)
Q Consensus 482 Iil~TH~~~e--~-----------~~l~dri~il~~G~l~~~g~~~~l 516 (614)
+|++||+.+. + ..++||+++|++|+ ..|+++++
T Consensus 222 vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 222 IIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred EEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 9999997654 4 25689999999887 66666544
No 416
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.70 E-value=8.2e-17 Score=167.79 Aligned_cols=176 Identities=30% Similarity=0.398 Sum_probs=139.7
Q ss_pred cceeeeeeEEEeCC-----cEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCC
Q 007178 310 KVAVNGLSLALPSG-----ECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWET 384 (614)
Q Consensus 310 ~~~l~~isl~i~~G-----ei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~ 384 (614)
+.-+-+..|.|..| |++..+|.||.||||++++++|.++|++|. ++. .-+++|=||...--..
T Consensus 349 ~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p------~lnVSykpqkispK~~ 416 (592)
T KOG0063|consen 349 KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIP------VLNVSYKPQKISPKRE 416 (592)
T ss_pred eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------ccc------ccceeccccccCcccc
Confidence 45677788888877 578999999999999999999999998873 111 1247888887544334
Q ss_pred CCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHH
Q 007178 385 LTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA 464 (614)
Q Consensus 385 lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~ 464 (614)
-||++-+.- .++. .-...+-+.+.++-+.++ +..|+.+.+||||++||+++|.+|-..+++.+.|||++-||.+
T Consensus 417 ~tvR~ll~~--kIr~--ay~~pqF~~dvmkpL~ie--~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSe 490 (592)
T KOG0063|consen 417 GTVRQLLHT--KIRD--AYMHPQFVNDVMKPLQIE--NIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSE 490 (592)
T ss_pred chHHHHHHH--HhHh--hhcCHHHHHhhhhhhhHH--HHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChH
Confidence 588886542 2221 111234566677777775 4789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--hcCCceEEEEcCCHHHHHhhCCEEEEEe
Q 007178 465 SRNNLWNVVKR--AKQGRAIILTTHSMEEAEALCDRLGIFV 503 (614)
Q Consensus 465 ~~~~i~~~l~~--~~~g~tIil~TH~~~e~~~l~dri~il~ 503 (614)
.|..--..+++ +..++|-.++.||.-.+.-++||+++..
T Consensus 491 QRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~ 531 (592)
T KOG0063|consen 491 QRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFE 531 (592)
T ss_pred HHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEe
Confidence 99999999988 3678999999999998889999987654
No 417
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.69 E-value=3.8e-17 Score=162.85 Aligned_cols=155 Identities=18% Similarity=0.196 Sum_probs=106.2
Q ss_pred cceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHH
Q 007178 310 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 389 (614)
Q Consensus 310 ~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e 389 (614)
+.+.+|++++.++ ++++|.||||+||||++|+++++.-. |+ .|..+. ..+..++++.| +++.+++.|
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l--~~---~g~~vp----~~~~~i~~~~~---i~~~~~~~~ 84 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL--AQ---IGSFVP----ASKAEIGVVDR---IFTRIGASD 84 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH--hc---cCCeec----cccceecceee---EeccCCchh
Confidence 4689999999987 99999999999999999999875422 11 122211 11245677654 567777777
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCCh--hHHHHHHHHHHHhCCCCEEEEeCC---CCCCCHH
Q 007178 390 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSG--GMKRRLSVAISLIGNPKVVYMDEP---STGLDPA 464 (614)
Q Consensus 390 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSg--G~kqrl~ia~al~~~p~vllLDEP---tsgLD~~ 464 (614)
++.... |. .+.++++-+.+.+.+|+++||||| |+++|+.
T Consensus 85 ~ls~g~------------------------------------s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~ 128 (216)
T cd03284 85 DLAGGR------------------------------------STFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGL 128 (216)
T ss_pred hhccCc------------------------------------chHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHH
Confidence 765320 11 122233333334679999999999 8888876
Q ss_pred HHHHHHHHHHHh-cC-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHH
Q 007178 465 SRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 516 (614)
Q Consensus 465 ~~~~i~~~l~~~-~~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l 516 (614)
+. .+.+++.+ +. +.++|++||+. +..+++|++-.+.+|++...++.+++
T Consensus 129 ~~--~~~il~~l~~~~~~~vi~~TH~~-~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 129 SI--AWAIVEYLHEKIGAKTLFATHYH-ELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred HH--HHHHHHHHHhccCCcEEEEeCcH-HHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 53 33344443 33 78999999997 45668999888899999887766554
No 418
>PRK00064 recF recombination protein F; Reviewed
Probab=99.64 E-value=1.1e-14 Score=156.14 Aligned_cols=78 Identities=24% Similarity=0.387 Sum_probs=69.1
Q ss_pred CCCCChhHHHHHHHHHHHh---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhC--
Q 007178 428 AGKYSGGMKRRLSVAISLI---------GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALC-- 496 (614)
Q Consensus 428 ~~~LSgG~kqrl~ia~al~---------~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~-- 496 (614)
...+|.||||++++|++|+ ++|++++||||+++||+..++.+.+.+.+. +..+++|||+++.+...+
T Consensus 271 ~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~~~~~~~ 348 (361)
T PRK00064 271 ADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL--GAQVFITTTDLEDLADLLEN 348 (361)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhhhhhhcc
Confidence 4579999999999999885 899999999999999999999999998753 458999999998887774
Q ss_pred CEEEEEeCCEE
Q 007178 497 DRLGIFVDGSL 507 (614)
Q Consensus 497 dri~il~~G~l 507 (614)
+++..|++|++
T Consensus 349 ~~i~~v~~G~i 359 (361)
T PRK00064 349 AKIFHVEQGKI 359 (361)
T ss_pred CcEEEEeCCEE
Confidence 57999999997
No 419
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.63 E-value=1.5e-16 Score=154.73 Aligned_cols=93 Identities=14% Similarity=0.106 Sum_probs=67.0
Q ss_pred HHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHH-HHHHHHh-c-CCceEEEEcCCHH
Q 007178 414 KSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL-WNVVKRA-K-QGRAIILTTHSME 490 (614)
Q Consensus 414 ~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i-~~~l~~~-~-~g~tIil~TH~~~ 490 (614)
..++.. +..++..+++|+|++|...+++ .+.+|+++|+|||++|+||..+..+ +.+++.+ + .+.++|++||+++
T Consensus 47 ~~~~~~--d~~~~~~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~ 123 (185)
T smart00534 47 TRIGAS--DSLAQGLSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHE 123 (185)
T ss_pred EEeCCC--CchhccccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHH
Confidence 345553 2567778899999987544443 3459999999999999999988876 4556665 3 3889999999995
Q ss_pred HHHhhCCEEEEEeCCEEEEE
Q 007178 491 EAEALCDRLGIFVDGSLQCI 510 (614)
Q Consensus 491 e~~~l~dri~il~~G~l~~~ 510 (614)
+.++||+---++++++...
T Consensus 124 -l~~~~~~~~~v~~~~~~~~ 142 (185)
T smart00534 124 -LTKLADEHPGVRNLHMSAD 142 (185)
T ss_pred -HHHHhhcCccceEEEEEEE
Confidence 5678886444455555443
No 420
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.56 E-value=2.8e-14 Score=141.91 Aligned_cols=137 Identities=16% Similarity=0.149 Sum_probs=92.8
Q ss_pred ceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhC--CCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCC-CCCCH
Q 007178 311 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG--ITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLW-ETLTG 387 (614)
Q Consensus 311 ~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~G--l~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~-~~lTv 387 (614)
.+=+|++++=..+.+++|.||||+||||++|.+.. .. +..|...... ...++|..|...-+ ...++
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~----------~~~~~~~d~i~~~l~~~~si 85 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD----------SATIGLVDKIFTRMSSRESV 85 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC----------CcEEeeeeeeeeeeCCccCh
Confidence 35566665422237999999999999999999984 33 5566654321 13467777753211 11121
Q ss_pred HHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHH
Q 007178 388 REHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRN 467 (614)
Q Consensus 388 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~ 467 (614)
.+++ . +. .-+-||++++++++.+|+++|+|||++|+|+....
T Consensus 86 ~~~~---------------------------S----------~f-~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~ 127 (213)
T cd03281 86 SSGQ---------------------------S----------AF-MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGA 127 (213)
T ss_pred hhcc---------------------------c----------hH-HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHH
Confidence 1111 0 00 23458999999999999999999999999997654
Q ss_pred HH-HHHHHHh-cC---CceEEEEcCCHHHHHhhC
Q 007178 468 NL-WNVVKRA-KQ---GRAIILTTHSMEEAEALC 496 (614)
Q Consensus 468 ~i-~~~l~~~-~~---g~tIil~TH~~~e~~~l~ 496 (614)
.+ +.+++++ ++ +.++|++||+.+.++...
T Consensus 128 ~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 128 GLLIATIEHLLKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred HHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence 44 6677775 33 358999999999888653
No 421
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.54 E-value=1.2e-14 Score=168.54 Aligned_cols=131 Identities=22% Similarity=0.293 Sum_probs=94.4
Q ss_pred eeEEEeCC-cEEEEECCCCCcHHHHHHHHhCC-CCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCC-CCCCCCHHHHHH
Q 007178 316 LSLALPSG-ECFGMLGPNGAGKTTFISMMIGI-TRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDL-LWETLTGREHLL 392 (614)
Q Consensus 316 isl~i~~G-ei~~LlG~NGaGKTTll~~l~Gl-~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~-l~~~lTv~e~l~ 392 (614)
+|+++.++ ++++|.||||+||||++|+|+|. +.+..|- ++|.+.. .++ ..+++.
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~--------------------~Vpa~~~~~~~---~~d~i~ 370 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI--------------------PIPANEHSEIP---YFEEIF 370 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC--------------------CccCCcccccc---chhhee
Confidence 67888777 99999999999999999999987 3333331 4444321 111 111110
Q ss_pred HHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHH-HH
Q 007178 393 FYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL-WN 471 (614)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i-~~ 471 (614)
..+ +.. +......+++|+||+|+..+++++ .+|+++|+|||++|+||.....+ +.
T Consensus 371 --~~i-------------------~~~--~si~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~a 426 (771)
T TIGR01069 371 --ADI-------------------GDE--QSIEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAIS 426 (771)
T ss_pred --eec-------------------ChH--hHHhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHH
Confidence 111 101 112344677999999999998886 78999999999999999999999 56
Q ss_pred HHHHh-cCCceEEEEcCCHHHHH
Q 007178 472 VVKRA-KQGRAIILTTHSMEEAE 493 (614)
Q Consensus 472 ~l~~~-~~g~tIil~TH~~~e~~ 493 (614)
++..+ ++|.++|++||+.+...
T Consensus 427 iLe~l~~~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 427 ILEYLLKQNAQVLITTHYKELKA 449 (771)
T ss_pred HHHHHHhcCCEEEEECChHHHHH
Confidence 77765 46899999999987644
No 422
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.53 E-value=1.1e-14 Score=145.41 Aligned_cols=179 Identities=21% Similarity=0.197 Sum_probs=100.3
Q ss_pred eeeeEEEeCCcEEEEECCCCCcHHHHHHHHh-CCC--CCCccEEEEcCeeCCC---cHHHhhcceEEEcCCCCCC-----
Q 007178 314 NGLSLALPSGECFGMLGPNGAGKTTFISMMI-GIT--RTTSGTAYVQGLDIRT---DMDRIYTSMGVCPQEDLLW----- 382 (614)
Q Consensus 314 ~~isl~i~~Gei~~LlG~NGaGKTTll~~l~-Gl~--~p~sG~i~i~G~~i~~---~~~~~~~~ig~~~Q~~~l~----- 382 (614)
++..+.+.+ .++.|+|||||||||++.+|. .+- +..+.+..-...-+.. ........+...+++..-.
T Consensus 16 ~~~~~~~~~-~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r~~~~~~lI~~~~~~~~~~~a~V~~~~~~~~~~~~~~~ 94 (220)
T PF02463_consen 16 KNAELSFSP-GLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFRGSKLKDLINKSGSDQDSKSAEVELIFDNSDEEFELDK 94 (220)
T ss_dssp CEEEEETTS-SEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-SSGGTCB--BTTB---SEEEEEEEEECTTEESSSSS
T ss_pred CeEEEecCC-CCEEEEcCCCCCHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccc
Confidence 456677765 499999999999999999993 332 1111111000000100 0011122344444332211
Q ss_pred CCCCHHHHHHHHh--hhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH----hCCCCEEEEeC
Q 007178 383 ETLTGREHLLFYG--RLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL----IGNPKVVYMDE 456 (614)
Q Consensus 383 ~~lTv~e~l~~~~--~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al----~~~p~vllLDE 456 (614)
+...+...+.--. ..+--......+.+.+.++..++.. ..||||||.+++||.-| ..++++++|||
T Consensus 95 ~~~~i~r~~~~~~~~~~~in~~~~~~~~~~~~l~~~~i~~--------~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDE 166 (220)
T PF02463_consen 95 KEIEISRRIDRKGRSEYKINGKKVRLKDLEELLPEVGISP--------EFLSGGEKSLVALALLLALQRYKPSPFLILDE 166 (220)
T ss_dssp SEEEEEEEEETTS-EEEEETTEEE-HHHHHHHHHCTTTTT--------TGS-HHHHHHHHHHHHHHHHTCS--SEEEEES
T ss_pred cccccccccccccccccccccccccccccccccccccccc--------cccccccccccccccccccccccccccccccc
Confidence 0000000000000 0000011223356677777777753 18999999999998654 46789999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEE
Q 007178 457 PSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIF 502 (614)
Q Consensus 457 PtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il 502 (614)
|.++||+..++.++++|++..++.-+|++||+-+... .||+.+.+
T Consensus 167 vd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~-~a~~~~~v 211 (220)
T PF02463_consen 167 VDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFE-DADKLIGV 211 (220)
T ss_dssp TTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHT-T-SEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 9999999999999999999877788999999976655 58886543
No 423
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.51 E-value=2.4e-14 Score=142.37 Aligned_cols=146 Identities=18% Similarity=0.182 Sum_probs=88.5
Q ss_pred EEEEECCCCCcHHHHH-HHHhCCCCC-----------------CccEEEEcCeeCCCcH--HHhhcceEEEcCCCCC--C
Q 007178 325 CFGMLGPNGAGKTTFI-SMMIGITRT-----------------TSGTAYVQGLDIRTDM--DRIYTSMGVCPQEDLL--W 382 (614)
Q Consensus 325 i~~LlG~NGaGKTTll-~~l~Gl~~p-----------------~sG~i~i~G~~i~~~~--~~~~~~ig~~~Q~~~l--~ 382 (614)
-++++|+||||||||+ +.++|..++ +.|.+.+.+.|+.... ...+ .+|..+.+.. .
T Consensus 11 kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~--~~~~~~~~~~i~v 88 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLR--DGYYIKGQCAIIM 88 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhh--HHHhccCCEEEEE
Confidence 4799999999999999 689998764 5678888888874321 1111 2233332211 0
Q ss_pred CCCC---HHHHHHHH-hh-----------hcC--CC--chhHHHHHHHHHHHcCCCCCCcccccCCCCChh--HHHHHHH
Q 007178 383 ETLT---GREHLLFY-GR-----------LKN--LK--GPALTQAVEESLKSVNLFHGGVADKQAGKYSGG--MKRRLSV 441 (614)
Q Consensus 383 ~~lT---v~e~l~~~-~~-----------~~~--~~--~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG--~kqrl~i 441 (614)
-+.| ..+++..+ .. +-+ .. ..+......+..+..++. +. ..+..||+ +++++.|
T Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~--e~Sa~~~~~v~~~f~~i 163 (215)
T PTZ00132 89 FDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQ---YY--DISAKSNYNFEKPFLWL 163 (215)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHcCCE---EE--EEeCCCCCCHHHHHHHH
Confidence 1111 11111110 00 001 01 111111222334444431 22 34445555 8999999
Q ss_pred HHHHhCCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHhc
Q 007178 442 AISLIGNPKVVYMDEPS-----TGLDPASRNNLWNVVKRAK 477 (614)
Q Consensus 442 a~al~~~p~vllLDEPt-----sgLD~~~~~~i~~~l~~~~ 477 (614)
|++++.+|+++++|||| +||||..++.+.+.+++++
T Consensus 164 a~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 164 ARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 99999999999999999 9999999999999998864
No 424
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.48 E-value=7.6e-14 Score=145.87 Aligned_cols=196 Identities=20% Similarity=0.258 Sum_probs=132.4
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhh--cceEEEcCC---CCCCCCCCHHHHHHHHh
Q 007178 321 PSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY--TSMGVCPQE---DLLWETLTGREHLLFYG 395 (614)
Q Consensus 321 ~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~--~~ig~~~Q~---~~l~~~lTv~e~l~~~~ 395 (614)
.+|++.|++|.||-||||-+++++|-.+|.-|.-. ++-+-.+-....| .--+| +|. +.+-.-....+-..++.
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~-~pp~w~~il~~frgselq~y-ftk~le~~lk~~~kpQyvd~ipr 175 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYD-NPPDWQEILTYFRGSELQNY-FTKILEDNLKAIIKPQYVDQIPR 175 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCC-CCcchHHHhhhhhhHHHhhh-hhhhccccccCcCChHHHHHHHH
Confidence 58999999999999999999999999999877531 1111000000000 00011 110 11100001111111111
Q ss_pred hhcC-----CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHH
Q 007178 396 RLKN-----LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLW 470 (614)
Q Consensus 396 ~~~~-----~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~ 470 (614)
..++ +.....++..+++.+.++|. ...++.+.+||||+-||.++|++.+.+.++.++|||++-||...|..-.
T Consensus 176 ~~k~~v~~~l~~~~~r~~~~~~~~~~~L~--~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA 253 (592)
T KOG0063|consen 176 AVKGTVGSLLDRKDERDNKEEVCDQLDLN--NLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAA 253 (592)
T ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHh--hHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHH
Confidence 1111 11223344567788888886 3789999999999999999999999999999999999999999999999
Q ss_pred HHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeC-----CEEEEEcCHHHHHHhc
Q 007178 471 NVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVD-----GSLQCIGNPKELKARY 520 (614)
Q Consensus 471 ~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~-----G~l~~~g~~~~l~~~~ 520 (614)
..|+.+ ..++=||++.||++..+-++|-+.++-. |-+..--+..+..+.+
T Consensus 254 ~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLYGvp~aYGVVT~Pfsvr~giniF 309 (592)
T KOG0063|consen 254 ITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYGVPSAYGVVTMPFSVREGINIF 309 (592)
T ss_pred HHHHHhhCCCCeEEEEEeechHHHhhhcceeEEecCCccceEEEeccchhhhhhhh
Confidence 999986 5689999999999999999999988753 3343333444444444
No 425
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.48 E-value=2.5e-13 Score=147.84 Aligned_cols=175 Identities=18% Similarity=0.248 Sum_probs=121.1
Q ss_pred cceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC---------cHHHhhcceEEEcCCCC
Q 007178 310 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---------DMDRIYTSMGVCPQEDL 380 (614)
Q Consensus 310 ~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~---------~~~~~~~~ig~~~Q~~~ 380 (614)
..+++++ +.+.+|++++|+|+||+|||||+++|+|+.+|+.|.|.+.|++-.. ....+++.++++.+.+.
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~ 224 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQ 224 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCC
Confidence 5699999 9999999999999999999999999999999999999997654321 22335678999987543
Q ss_pred CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHH--HHHHHHHHHhCCCCEEEEeCC-
Q 007178 381 LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK--RRLSVAISLIGNPKVVYMDEP- 457 (614)
Q Consensus 381 l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~k--qrl~ia~al~~~p~vllLDEP- 457 (614)
++.+...-. . .--.+.|.+..-|-. .=-...+++-=-+ |=+++ .+.||
T Consensus 225 -----~~~~r~~~~--~-------~a~~iAEyfr~~g~~----Vll~~Dsltr~A~A~rEisl-----------~~ge~P 275 (438)
T PRK07721 225 -----PALMRIKGA--Y-------TATAIAEYFRDQGLN----VMLMMDSVTRVAMAQREIGL-----------AVGEPP 275 (438)
T ss_pred -----CHHHHHHHH--H-------HHHHHHHHHHHCCCc----EEEEEeChHHHHHHHHHHHH-----------hcCCCC
Confidence 222222211 0 011223333333321 0011122221110 11111 23454
Q ss_pred -CCCCCHHHHHHHHHHHHHhc---CCc-----eEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHH
Q 007178 458 -STGLDPASRNNLWNVVKRAK---QGR-----AIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 516 (614)
Q Consensus 458 -tsgLD~~~~~~i~~~l~~~~---~g~-----tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l 516 (614)
|+|+||.....++++++++. +|. ||++.+|||++ .+||++..|.+|+++.+++..+-
T Consensus 276 ~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e--~i~d~v~~i~dG~Ivls~~la~~ 341 (438)
T PRK07721 276 TTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE--PIADTVRGILDGHFVLDRQLANK 341 (438)
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc--hhhhhEEEecCEEEEEeccHHHC
Confidence 78999999999999999864 475 99999999995 78999999999999999988763
No 426
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.47 E-value=5.2e-14 Score=123.60 Aligned_cols=76 Identities=17% Similarity=0.171 Sum_probs=63.8
Q ss_pred cceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHH-HhhcceEEEcCCCCCCCCCCHH
Q 007178 310 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMD-RIYTSMGVCPQEDLLWETLTGR 388 (614)
Q Consensus 310 ~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~-~~~~~ig~~~Q~~~l~~~lTv~ 388 (614)
+.+|++++|++++||+++|+||||||||||++++. +|++.++|.|+..... ..++.++++||+ ++. -|++
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~-~ti~ 72 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLE-IRLR 72 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cch-hhHH
Confidence 46999999999999999999999999999999986 8999999999865333 344557777777 555 4999
Q ss_pred HHHHHH
Q 007178 389 EHLLFY 394 (614)
Q Consensus 389 e~l~~~ 394 (614)
|||.+.
T Consensus 73 ~Ni~~~ 78 (107)
T cd00820 73 LNIFLI 78 (107)
T ss_pred hhceee
Confidence 999873
No 427
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.43 E-value=2.6e-13 Score=157.98 Aligned_cols=151 Identities=21% Similarity=0.281 Sum_probs=105.3
Q ss_pred eeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceE-EEcCCCCCCCCCCHHHH
Q 007178 312 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMG-VCPQEDLLWETLTGREH 390 (614)
Q Consensus 312 ~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig-~~~Q~~~l~~~lTv~e~ 390 (614)
+=+|+++. ..+.++.|.|||++||||++|.++... +..++| +||-... ..+++.++
T Consensus 317 Vpndi~l~-~~~~~~iITGpN~gGKTt~lktigl~~--------------------~maq~G~~vpa~~~--~~i~~~~~ 373 (782)
T PRK00409 317 VPKDISLG-FDKTVLVITGPNTGGKTVTLKTLGLAA--------------------LMAKSGLPIPANEP--SEIPVFKE 373 (782)
T ss_pred ECceeEEC-CCceEEEEECCCCCCcHHHHHHHHHHH--------------------HHHHhCCCcccCCC--ccccccce
Confidence 44555554 346789999999999999999995321 112233 4444321 01222222
Q ss_pred HHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHH
Q 007178 391 LLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLW 470 (614)
Q Consensus 391 l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~ 470 (614)
+. ..+|-. +...+..+++|+||+|++.+++++ .+|+++|+|||++|+||.....+.
T Consensus 374 i~---------------------~~ig~~--~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala 429 (782)
T PRK00409 374 IF---------------------ADIGDE--QSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALA 429 (782)
T ss_pred EE---------------------EecCCc--cchhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHH
Confidence 21 122322 234567888999999999999998 899999999999999999999886
Q ss_pred H-HHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEE
Q 007178 471 N-VVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCI 510 (614)
Q Consensus 471 ~-~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~ 510 (614)
. ++..+ ++|.++|++||+.+.+...+++..++ ++.+..+
T Consensus 430 ~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~-~~~~~~d 470 (782)
T PRK00409 430 ISILEYLRKRGAKIIATTHYKELKALMYNREGVE-NASVEFD 470 (782)
T ss_pred HHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeE-EEEEEEe
Confidence 5 56555 46899999999999888878876654 5566553
No 428
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.41 E-value=2.2e-12 Score=128.89 Aligned_cols=138 Identities=14% Similarity=0.214 Sum_probs=92.0
Q ss_pred cceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhC-CCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHH
Q 007178 310 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG-ITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 388 (614)
Q Consensus 310 ~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~G-l~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~ 388 (614)
+.+.+|+++++++|++++|.||||+||||++++++| .+.++.|..... +. -.+++..| ++-.+...
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a-~~---------~~~~~~~~---i~~~~~~~ 84 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPA-SS---------ATLSIFDS---VLTRMGAS 84 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEc-Cc---------eEEeccce---EEEEecCc
Confidence 468999999999999999999999999999999999 677888875432 21 12344322 11111112
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHH
Q 007178 389 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNN 468 (614)
Q Consensus 389 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~ 468 (614)
|++.- | -++++ .+-++++-...-+.+|+++|+|||.+|.|+.....
T Consensus 85 d~~~~-----------------------~----------~StF~-~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~ 130 (222)
T cd03287 85 DSIQH-----------------------G----------MSTFM-VELSETSHILSNCTSRSLVILDELGRGTSTHDGIA 130 (222)
T ss_pred ccccc-----------------------c----------cchHH-HHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHH
Confidence 21110 0 00011 11223333333456899999999999999887777
Q ss_pred H-HHHHHHh-cC-CceEEEEcCCHHHHHh
Q 007178 469 L-WNVVKRA-KQ-GRAIILTTHSMEEAEA 494 (614)
Q Consensus 469 i-~~~l~~~-~~-g~tIil~TH~~~e~~~ 494 (614)
+ +.+++.+ +. +.++|++||+.+.++.
T Consensus 131 i~~~il~~l~~~~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 131 IAYATLHYLLEEKKCLVLFVTHYPSLGEI 159 (222)
T ss_pred HHHHHHHHHHhccCCeEEEEcccHHHHHH
Confidence 4 6677765 33 7899999999998753
No 429
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.37 E-value=1.1e-12 Score=148.51 Aligned_cols=77 Identities=16% Similarity=0.175 Sum_probs=71.3
Q ss_pred CCCChhHHHHHHHHHHHhCC----CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeC
Q 007178 429 GKYSGGMKRRLSVAISLIGN----PKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVD 504 (614)
Q Consensus 429 ~~LSgG~kqrl~ia~al~~~----p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~ 504 (614)
..|||||+||+++|++++.. |+++|+||||+|||+..+..+.+.|+++.++++||++||+++.+. .||++++|++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~-~ad~~~~l~k 517 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAA-HADAHFKVEK 517 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHH-hcCeEEEEEE
Confidence 36899999999999999985 699999999999999999999999999877999999999999885 7999999998
Q ss_pred CE
Q 007178 505 GS 506 (614)
Q Consensus 505 G~ 506 (614)
|.
T Consensus 518 ~~ 519 (563)
T TIGR00634 518 EG 519 (563)
T ss_pred cc
Confidence 75
No 430
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.37 E-value=1.4e-12 Score=157.79 Aligned_cols=83 Identities=18% Similarity=0.190 Sum_probs=77.3
Q ss_pred cccccCCCCChhHHHHHHHHHHHhC----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHH
Q 007178 423 VADKQAGKYSGGMKRRLSVAISLIG----------NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEE 491 (614)
Q Consensus 423 ~~~~~~~~LSgG~kqrl~ia~al~~----------~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e 491 (614)
..++++.+|||||++|+++|+||+. +|+++|+||||+|||+.++..+++.|.++. .|++|++|||++++
T Consensus 943 ~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~ 1022 (1042)
T TIGR00618 943 GSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEF 1022 (1042)
T ss_pred CCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHH
Confidence 5678899999999999999999985 799999999999999999999999999864 68999999999999
Q ss_pred HHhhCCEEEEEeCC
Q 007178 492 AEALCDRLGIFVDG 505 (614)
Q Consensus 492 ~~~l~dri~il~~G 505 (614)
.+.+||+|.|++.|
T Consensus 1023 ~~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1023 RERIPHRILVKKTN 1036 (1042)
T ss_pred HHhhCCEEEEEECC
Confidence 99999999999765
No 431
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.36 E-value=3.4e-12 Score=138.14 Aligned_cols=168 Identities=17% Similarity=0.216 Sum_probs=125.7
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhc
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 370 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~ 370 (614)
.++-+.+++.|.. ...+++++ +.+.+||.++|+|+||+|||||+++|+|..+|+.|.|.+.|+..
T Consensus 130 ~~~r~~i~~~l~T-----GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg--------- 194 (432)
T PRK06793 130 AFEREEITDVFET-----GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG--------- 194 (432)
T ss_pred chheechhhccCC-----CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc---------
Confidence 4667788888863 25689985 99999999999999999999999999999999988776655321
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHh----
Q 007178 371 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI---- 446 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~---- 446 (614)
.+|+|.+..... .-++.. ...=....+.|.|+|+|++.+.+.+
T Consensus 195 --------------~ev~e~~~~~l~------------------~~gl~~-tvvv~~tsd~s~~~r~ra~~~a~~iAEyf 241 (432)
T PRK06793 195 --------------REVKDFIRKELG------------------EEGMRK-SVVVVATSDESHLMQLRAAKLATSIAEYF 241 (432)
T ss_pred --------------ccHHHHHHHHhh------------------hcccce-eEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 356665432111 112211 1122456778999999999999988
Q ss_pred ---CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcC
Q 007178 447 ---GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 512 (614)
Q Consensus 447 ---~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~ 512 (614)
+++-++++|+||...|+. +++...+.+.. .|.+..+.||.. ++++|.....+|.|.+.++
T Consensus 242 r~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~----~L~ERag~~~~GSiT~~~t 305 (432)
T PRK06793 242 RDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMK----KLLERSGKTQKGSITGIYT 305 (432)
T ss_pred HHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccch----hHHHHhccCCCcceEEEEE
Confidence 999999999999999996 77887777653 588999989853 4455555567888877654
No 432
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.35 E-value=8.3e-12 Score=125.69 Aligned_cols=148 Identities=23% Similarity=0.292 Sum_probs=90.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHH-HHHHhCCCCCCccEEEEcCeeCCCcHHHhh
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTF-ISMMIGITRTTSGTAYVQGLDIRTDMDRIY 369 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTl-l~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~ 369 (614)
.+.++++.+.+++ .+++|+++.|.|+|||||||+ ++++.++.++....+++...
T Consensus 7 ~~~~~~ld~~l~g---------------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e---------- 61 (230)
T PRK08533 7 ELSRDELHKRLGG---------------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ---------- 61 (230)
T ss_pred EEEEeeeehhhCC---------------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC----------
Confidence 3667888888864 378999999999999999999 79999887654333333221
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHh---
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI--- 446 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~--- 446 (614)
.|..+.+....++ |.. +++....=.+. ..+.. ..+|+++.++-.+.+.+-
T Consensus 62 ---------------~~~~~~~~~~~~~-g~~-------~~~~~~~~~l~---~~~~~-~~~~~~~~~~~~l~~il~~~~ 114 (230)
T PRK08533 62 ---------------LTTTEFIKQMMSL-GYD-------INKKLISGKLL---YIPVY-PLLSGNSEKRKFLKKLMNTRR 114 (230)
T ss_pred ---------------CCHHHHHHHHHHh-CCc-------hHHHhhcCcEE---EEEec-ccccChHHHHHHHHHHHHHHH
Confidence 2344444433222 111 11111110110 11212 235666554444333222
Q ss_pred -CCCCEEEEeCCCCCC----CHHHHHHHHHHHHHh-cCCceEEEEcCCHHH
Q 007178 447 -GNPKVVYMDEPSTGL----DPASRNNLWNVVKRA-KQGRAIILTTHSMEE 491 (614)
Q Consensus 447 -~~p~vllLDEPtsgL----D~~~~~~i~~~l~~~-~~g~tIil~TH~~~e 491 (614)
.+|+++++||||+++ |+..++.+++.++++ ++|.|++++ |++.+
T Consensus 115 ~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t-~~~~~ 164 (230)
T PRK08533 115 FYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILT-ANPKE 164 (230)
T ss_pred hcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEE-ecccc
Confidence 379999999999999 888899999999886 457766665 55543
No 433
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.34 E-value=1.9e-12 Score=146.92 Aligned_cols=81 Identities=19% Similarity=0.311 Sum_probs=72.0
Q ss_pred cccCCCCChhHHHHHHHHHHHh----------CCCCEEEEeCCC-CCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHH
Q 007178 425 DKQAGKYSGGMKRRLSVAISLI----------GNPKVVYMDEPS-TGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAE 493 (614)
Q Consensus 425 ~~~~~~LSgG~kqrl~ia~al~----------~~p~vllLDEPt-sgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~ 493 (614)
+..+.+||||||||++||+||+ .+|+++|||||| ++||+.++..+.+.|.++ +|.+||++||+.+..
T Consensus 463 ~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~-~~~~iiiish~~~~~- 540 (562)
T PHA02562 463 DFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL-KDTNVFVISHKDHDP- 540 (562)
T ss_pred ccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC-CCCeEEEEECchhch-
Confidence 4477899999999999999987 699999999998 789999999999999988 789999999997765
Q ss_pred hhCCEEEEEeC-CEE
Q 007178 494 ALCDRLGIFVD-GSL 507 (614)
Q Consensus 494 ~l~dri~il~~-G~l 507 (614)
..|||+++|.+ |+.
T Consensus 541 ~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 541 QKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhcEEEEEEECCe
Confidence 46999999986 543
No 434
>PRK14079 recF recombination protein F; Provisional
Probab=99.33 E-value=3.8e-11 Score=128.25 Aligned_cols=77 Identities=23% Similarity=0.260 Sum_probs=63.5
Q ss_pred CCCChhHHHHHHHHHHHh---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEE
Q 007178 429 GKYSGGMKRRLSVAISLI---------GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRL 499 (614)
Q Consensus 429 ~~LSgG~kqrl~ia~al~---------~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri 499 (614)
..+|+||||++++|+.|+ ++|++++||||+++||+..++.+++.|.... .++|-+|+ ....||++
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~--q~~it~t~----~~~~~~~~ 335 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP--QAIVAGTE----APPGAALT 335 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC--cEEEEcCC----CCCCCceE
Confidence 358999999999999999 9999999999999999999999999986543 24444443 34579999
Q ss_pred EEEeCCEEEEEc
Q 007178 500 GIFVDGSLQCIG 511 (614)
Q Consensus 500 ~il~~G~l~~~g 511 (614)
+.+++|++.-..
T Consensus 336 ~~~~~~~~~~~~ 347 (349)
T PRK14079 336 LRIEAGVFTPEA 347 (349)
T ss_pred EEEeccEecCCC
Confidence 999999876443
No 435
>PRK13695 putative NTPase; Provisional
Probab=99.33 E-value=9.8e-13 Score=126.62 Aligned_cols=152 Identities=18% Similarity=0.228 Sum_probs=96.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchh
Q 007178 325 CFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA 404 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~ 404 (614)
.++|.|+||+||||+++.|.+.+.+ .| +.+. ||+.|+.......+. + .+......
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G-~~~~---------------g~~~~~~~~~~~~~~-----~--~~~~~~~~- 56 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE-EG-YKVG---------------GFYTEEVREGGKRIG-----F--KIIDLDTG- 56 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CC-CeEE---------------EEEcHHHHhcCCccc-----e--EEEEcCCC-
Confidence 4789999999999999999887654 45 2322 233221100000000 0 00000000
Q ss_pred HHHHHHHHHHHcCC-CCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeC--CCCCCCHHHHHHHHHHHHHhcCCce
Q 007178 405 LTQAVEESLKSVNL-FHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDE--PSTGLDPASRNNLWNVVKRAKQGRA 481 (614)
Q Consensus 405 ~~~~~~~~l~~~~L-~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDE--PtsgLD~~~~~~i~~~l~~~~~g~t 481 (614)
....+...+. .. ....+....+||+++.+..+++..+.+|+++++|| |+.++|+..++.+.+++ +.|++
T Consensus 57 ----~~~~l~~~~~~~~-~~~~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~---~~~~~ 128 (174)
T PRK13695 57 ----EEGILARVGFPSR-PRVGKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL---DSEKP 128 (174)
T ss_pred ----CeEEccccCCCCC-CceeeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH---hCCCe
Confidence 0111222332 21 22345566799999999999999999999999999 55566655544444444 46899
Q ss_pred EEEEcCCHHHHHhhCCEEEEEeCCEEEEE
Q 007178 482 IILTTHSMEEAEALCDRLGIFVDGSLQCI 510 (614)
Q Consensus 482 Iil~TH~~~e~~~l~dri~il~~G~l~~~ 510 (614)
+|+++|+ ..+...+|+|..+.+|++...
T Consensus 129 ~i~v~h~-~~~~~~~~~i~~~~~~~i~~~ 156 (174)
T PRK13695 129 VIATLHR-RSVHPFVQEIKSRPGGRVYEL 156 (174)
T ss_pred EEEEECc-hhhHHHHHHHhccCCcEEEEE
Confidence 9999998 455678999999999998765
No 436
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.33 E-value=2.6e-12 Score=130.45 Aligned_cols=177 Identities=15% Similarity=0.179 Sum_probs=113.0
Q ss_pred ceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcc--EEEEc--CeeCCCcHHHhhcce---EEEcCCCCCCC
Q 007178 311 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG--TAYVQ--GLDIRTDMDRIYTSM---GVCPQEDLLWE 383 (614)
Q Consensus 311 ~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG--~i~i~--G~~i~~~~~~~~~~i---g~~~Q~~~l~~ 383 (614)
+|+|.+ +.+.+||..+|+||+|+|||||++.|.+......+ .+.+. |+.- .+..+..+.+ -++-+-+.
T Consensus 5 ~~id~~-~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~-~ev~el~~~I~~~~v~~~~~~--- 79 (249)
T cd01128 5 RVVDLF-APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERP-EEVTDMQRSVKGEVIASTFDE--- 79 (249)
T ss_pred hheeee-cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCC-ccHHHHHHHhccEEEEecCCC---
Confidence 355543 57889999999999999999999999998877643 32322 2211 1222332222 22333222
Q ss_pred CCCHHHHHHHH-------h--hhcCCC----chhHHHHHHHHHHHcCCCCCCcccccCCCCChhH--------HHHHHHH
Q 007178 384 TLTGREHLLFY-------G--RLKNLK----GPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM--------KRRLSVA 442 (614)
Q Consensus 384 ~lTv~e~l~~~-------~--~~~~~~----~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~--------kqrl~ia 442 (614)
+..+..... . +-.|.+ -++. .+..+..+.+.. .....+|||+ +||+++|
T Consensus 80 --~~~~~~~~~~~~~~~a~~~~~~G~~vll~iDei-~r~a~a~~ev~~-------~~G~~~sgG~~~~~~~~~~q~~~~A 149 (249)
T cd01128 80 --PPERHVQVAEMVLEKAKRLVEHGKDVVILLDSI-TRLARAYNTVVP-------PSGKILSGGVDANALHKPKRFFGAA 149 (249)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECH-HHhhhhhhhccc-------cCCCCCCCCcChhhhhhhHHHHHHh
Confidence 122222110 0 111211 0111 223333444433 2334479999 9999999
Q ss_pred HHHhCCCCEEEEeCCCCCCCHHHHHH-HHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCEE
Q 007178 443 ISLIGNPKVVYMDEPSTGLDPASRNN-LWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSL 507 (614)
Q Consensus 443 ~al~~~p~vllLDEPtsgLD~~~~~~-i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~l 507 (614)
|++..+++|.+| ||+.+|+.+... +. +.+.+ .+.|.|+.||.+.+.. ..|.|.+|++|++
T Consensus 150 r~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~-~~paI~vl~s~sr 211 (249)
T cd01128 150 RNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERR-IFPAIDILKSGTR 211 (249)
T ss_pred cCCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCC-CCCeEEEcCCCCc
Confidence 999999999999 999999765544 43 44554 6889999999999865 6899999999997
No 437
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.31 E-value=2.7e-11 Score=120.71 Aligned_cols=140 Identities=14% Similarity=0.183 Sum_probs=91.6
Q ss_pred cceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-CccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHH
Q 007178 310 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-TSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 388 (614)
Q Consensus 310 ~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~ 388 (614)
+.+-+|++++.++|++++|.||||+||||+++++++..-. ..|. .+... ... ++-.+.++..+...
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~------~vpa~----~~~---i~~~~~i~~~~~~~ 83 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGM------DVPAK----SMR---LSLVDRIFTRIGAR 83 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCC------ccCcc----ccE---eccccEEEEecCcc
Confidence 4689999999999999999999999999999999886322 1121 11000 011 12222333333333
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHH
Q 007178 389 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNN 468 (614)
Q Consensus 389 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~ 468 (614)
|++... -+++. .+-++++-....+.+|+++|+|||.+|.||.....
T Consensus 84 d~~~~~---------------------------------~StF~-~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~ 129 (218)
T cd03286 84 DDIMKG---------------------------------ESTFM-VELSETANILRHATPDSLVILDELGRGTSTHDGYA 129 (218)
T ss_pred cccccC---------------------------------cchHH-HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHH
Confidence 333210 00111 12233333333456799999999999999999988
Q ss_pred HHHH-HHHh-cC-CceEEEEcCCHHHHHhhC
Q 007178 469 LWNV-VKRA-KQ-GRAIILTTHSMEEAEALC 496 (614)
Q Consensus 469 i~~~-l~~~-~~-g~tIil~TH~~~e~~~l~ 496 (614)
+... ++.+ +. +.+++++||+++.+..++
T Consensus 130 la~ail~~L~~~~~~~~i~~TH~~el~~~~~ 160 (218)
T cd03286 130 IAHAVLEYLVKKVKCLTLFSTHYHSLCDEFH 160 (218)
T ss_pred HHHHHHHHHHHhcCCcEEEEeccHHHHHHhh
Confidence 8877 5555 33 899999999999988776
No 438
>PRK10869 recombination and repair protein; Provisional
Probab=99.30 E-value=7.3e-12 Score=141.09 Aligned_cols=76 Identities=17% Similarity=0.244 Sum_probs=70.0
Q ss_pred CCChhHHHHHHHHHHHhC----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCC
Q 007178 430 KYSGGMKRRLSVAISLIG----NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDG 505 (614)
Q Consensus 430 ~LSgG~kqrl~ia~al~~----~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G 505 (614)
.|||||+||++||++++. +|+++|+|||++|||+..+..+.+.|+++.++.+||++||++..+ .+||+.+.+.++
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~-~~ad~~~~v~k~ 508 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVA-GCGHQHFFVSKE 508 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEecc
Confidence 479999999999999996 689999999999999999999999999987789999999999877 689999999875
Q ss_pred E
Q 007178 506 S 506 (614)
Q Consensus 506 ~ 506 (614)
.
T Consensus 509 ~ 509 (553)
T PRK10869 509 T 509 (553)
T ss_pred c
Confidence 4
No 439
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.26 E-value=1.5e-11 Score=122.47 Aligned_cols=66 Identities=29% Similarity=0.394 Sum_probs=54.6
Q ss_pred cCCCCChhHHHHHHHHHHHhCCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEcCCHHHH
Q 007178 427 QAGKYSGGMKRRLSVAISLIGNP---KVVYMDEPSTGLDPASRNNLWNVVKRAKQ-GRAIILTTHSMEEA 492 (614)
Q Consensus 427 ~~~~LSgG~kqrl~ia~al~~~p---~vllLDEPtsgLD~~~~~~i~~~l~~~~~-g~tIil~TH~~~e~ 492 (614)
+...+|.|+||.+.++.++...+ .++++|||-++|+|..++.+.+.|++..+ +.-||+|||++..+
T Consensus 233 ~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 233 PLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp GGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred eeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 45677999999999998888776 99999999999999999999999988655 88999999997653
No 440
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.25 E-value=2e-11 Score=118.12 Aligned_cols=82 Identities=17% Similarity=0.050 Sum_probs=69.5
Q ss_pred cccccCCCCChhHHH------HHHHHHHHhCCCCEEEEeCCCCCCC---HHHHHHHHHHHHHhc-CCceEEEEcCCHHH-
Q 007178 423 VADKQAGKYSGGMKR------RLSVAISLIGNPKVVYMDEPSTGLD---PASRNNLWNVVKRAK-QGRAIILTTHSMEE- 491 (614)
Q Consensus 423 ~~~~~~~~LSgG~kq------rl~ia~al~~~p~vllLDEPtsgLD---~~~~~~i~~~l~~~~-~g~tIil~TH~~~e- 491 (614)
..+..+..+|+|++| +...+.+...+|+++++|||++.+| +..+..+.++++.++ .|.|+|+++|+.+.
T Consensus 64 ~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~ 143 (187)
T cd01124 64 IVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLE 143 (187)
T ss_pred EEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCC
Confidence 568888999999998 5556666778999999999999999 888888999888864 69999999998775
Q ss_pred --------HHhhCCEEEEEeC
Q 007178 492 --------AEALCDRLGIFVD 504 (614)
Q Consensus 492 --------~~~l~dri~il~~ 504 (614)
++.+||.++.|+.
T Consensus 144 ~~~~~~~~~~~~aD~ii~l~~ 164 (187)
T cd01124 144 GTGFGGGDVEYLVDGVIRLRL 164 (187)
T ss_pred CcccCcCceeEeeeEEEEEEE
Confidence 6788999888863
No 441
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.19 E-value=5.3e-11 Score=130.60 Aligned_cols=150 Identities=20% Similarity=0.311 Sum_probs=106.5
Q ss_pred ceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHH
Q 007178 311 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREH 390 (614)
Q Consensus 311 ~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~ 390 (614)
.++++.+..+++|++++|+||||+||||++..|++.+.+..|. ++++++.+|. ...++.|+
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~----------------~kV~LI~~Dt---~RigA~EQ 304 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA----------------SKVALLTTDS---YRIGGHEQ 304 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC----------------CeEEEEeCCc---cchhHHHH
Confidence 3566777778899999999999999999999999987766663 2478888876 35789999
Q ss_pred HHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHH-HHHHHHHHhCCC-----CEEEEeCCCCCCCHH
Q 007178 391 LLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKR-RLSVAISLIGNP-----KVVYMDEPSTGLDPA 464 (614)
Q Consensus 391 l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kq-rl~ia~al~~~p-----~vllLDEPtsgLD~~ 464 (614)
|.+++.+.+.+....+...+...+..++.+ +....+.+...+++. .+.-..+++.++ .+|+||.++.+
T Consensus 305 Lr~~AeilGVpv~~~~~~~Dl~~aL~~L~d--~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~---- 378 (484)
T PRK06995 305 LRIYGKILGVPVHAVKDAADLRLALSELRN--KHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG---- 378 (484)
T ss_pred HHHHHHHhCCCeeccCCchhHHHHHHhccC--CCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH----
Confidence 999999988765444445555666677753 556777875544432 234455555555 68999999887
Q ss_pred HHHHHHHHHHHhc-CCceEEEEcC
Q 007178 465 SRNNLWNVVKRAK-QGRAIILTTH 487 (614)
Q Consensus 465 ~~~~i~~~l~~~~-~g~tIil~TH 487 (614)
..+.+.++..+ .+.+=++.|+
T Consensus 379 --~~l~~i~~~f~~~~~~g~IlTK 400 (484)
T PRK06995 379 --DTLNEVVQAYRGPGLAGCILTK 400 (484)
T ss_pred --HHHHHHHHHhccCCCCEEEEeC
Confidence 44556666554 3555444454
No 442
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.19 E-value=4.5e-11 Score=144.28 Aligned_cols=81 Identities=19% Similarity=0.222 Sum_probs=74.6
Q ss_pred ccccCCCCChhHHHHHHHHHHHhC--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHh
Q 007178 424 ADKQAGKYSGGMKRRLSVAISLIG--------NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEA 494 (614)
Q Consensus 424 ~~~~~~~LSgG~kqrl~ia~al~~--------~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~ 494 (614)
.++++.+|||||+++++||+||+. +|+++|+||||+|||+.+++.+++.|..++ .|++|+++||..+..++
T Consensus 943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~ 1022 (1047)
T PRK10246 943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKER 1022 (1047)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHh
Confidence 458899999999999999999995 899999999999999999999999999874 69999999999999898
Q ss_pred hCCEEEEEeC
Q 007178 495 LCDRLGIFVD 504 (614)
Q Consensus 495 l~dri~il~~ 504 (614)
+..+|.|-..
T Consensus 1023 i~~qi~V~k~ 1032 (1047)
T PRK10246 1023 IPVQIKVKKI 1032 (1047)
T ss_pred ccceEEEEEC
Confidence 8888888765
No 443
>PRK03918 chromosome segregation protein; Provisional
Probab=99.18 E-value=5e-11 Score=142.35 Aligned_cols=79 Identities=25% Similarity=0.379 Sum_probs=69.1
Q ss_pred cccCCCCChhHHH------HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCC
Q 007178 425 DKQAGKYSGGMKR------RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCD 497 (614)
Q Consensus 425 ~~~~~~LSgG~kq------rl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~d 497 (614)
++++..|||||+| |+++|++++++|+++|+||||+|||+..++.+.++|... .++.+||++||+++. ...||
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~-~~~~d 861 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEEL-KDAAD 861 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHH-HHhCC
Confidence 4678899999999 555666888999999999999999999999999999885 457899999999875 56899
Q ss_pred EEEEEeC
Q 007178 498 RLGIFVD 504 (614)
Q Consensus 498 ri~il~~ 504 (614)
++++|..
T Consensus 862 ~~~~l~~ 868 (880)
T PRK03918 862 YVIRVSL 868 (880)
T ss_pred eEEEEEe
Confidence 9999983
No 444
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.18 E-value=6.4e-11 Score=146.29 Aligned_cols=73 Identities=26% Similarity=0.346 Sum_probs=65.6
Q ss_pred cccCCCCChhHHH------HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh------cCCceEEEEcCCHHHH
Q 007178 425 DKQAGKYSGGMKR------RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA------KQGRAIILTTHSMEEA 492 (614)
Q Consensus 425 ~~~~~~LSgG~kq------rl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~------~~g~tIil~TH~~~e~ 492 (614)
....+.||||||| |++||+|++.+|++++|||||+|||+.++..+.+.|..+ ..|.+||++||+++++
T Consensus 1194 ~~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~ 1273 (1311)
T TIGR00606 1194 LDMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFV 1273 (1311)
T ss_pred cCCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHH
Confidence 3355789999999 999999999999999999999999999999999988764 1378999999999999
Q ss_pred HhhCC
Q 007178 493 EALCD 497 (614)
Q Consensus 493 ~~l~d 497 (614)
..+|.
T Consensus 1274 ~~~~~ 1278 (1311)
T TIGR00606 1274 ELLGR 1278 (1311)
T ss_pred HHHhh
Confidence 99875
No 445
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.15 E-value=4.1e-10 Score=126.51 Aligned_cols=134 Identities=26% Similarity=0.373 Sum_probs=103.8
Q ss_pred CCCHHHHHHHHhhhcCCCchh---HHHHHHH------HHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCC--CCEE
Q 007178 384 TLTGREHLLFYGRLKNLKGPA---LTQAVEE------SLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN--PKVV 452 (614)
Q Consensus 384 ~lTv~e~l~~~~~~~~~~~~~---~~~~~~~------~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~--p~vl 452 (614)
.|++.|.+.|+..+. ++.++ .+..+.+ .|..+||.- --.++.+.+|||||.||+-+|.-+-.+ -=++
T Consensus 428 ~msi~~~~~f~~~l~-l~~~~~~ia~~ilkei~~RL~fL~~VGL~Y-LtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlY 505 (935)
T COG0178 428 EMSIADALEFFENLK-LSEKEKKIAEPILKEIKERLGFLVDVGLGY-LTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLY 505 (935)
T ss_pred hccHHHHHHHHHhCC-CchhhHHHHHHHHHHHHHHHHHHHHcCcCc-ccccccCCCcChhHHHHHHHHHHhcccceeeEE
Confidence 478888888877665 11111 1111222 344567752 235899999999999999999998765 3578
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEE------eCCEEEEEcCHHHHHHhc
Q 007178 453 YMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIF------VDGSLQCIGNPKELKARY 520 (614)
Q Consensus 453 lLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il------~~G~l~~~g~~~~l~~~~ 520 (614)
+||||+.||-+.--+++.+.|++++ .|-|+|++.||.+.+. .||+|+=| +.|++++.|+++++++..
T Consensus 506 VLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~-~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~ 579 (935)
T COG0178 506 VLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIR-AADHIIDIGPGAGEHGGEIVAEGTPEELLANP 579 (935)
T ss_pred EecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHh-hcCEEEeeCCCCCcCCCEEEEccCHHHHHhCC
Confidence 9999999999999999999999986 5999999999987765 59999754 679999999999997653
No 446
>PRK01156 chromosome segregation protein; Provisional
Probab=99.14 E-value=2.1e-10 Score=137.20 Aligned_cols=77 Identities=26% Similarity=0.337 Sum_probs=67.8
Q ss_pred ccCCCCChhHHHHHHH------HHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHH-hcC--C-ceEEEEcCCHHHHHhh
Q 007178 426 KQAGKYSGGMKRRLSV------AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR-AKQ--G-RAIILTTHSMEEAEAL 495 (614)
Q Consensus 426 ~~~~~LSgG~kqrl~i------a~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~-~~~--g-~tIil~TH~~~e~~~l 495 (614)
.++..||||||+|+++ |++++.+|++++|||||+|||+..+..+.+++.. +++ | .+||++||+++.+ ..
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~-~~ 875 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELL-SV 875 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHH-Hh
Confidence 4688999999999875 5899999999999999999999999999999975 332 3 4899999999977 57
Q ss_pred CCEEEEEe
Q 007178 496 CDRLGIFV 503 (614)
Q Consensus 496 ~dri~il~ 503 (614)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999987
No 447
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.13 E-value=6.9e-10 Score=130.71 Aligned_cols=70 Identities=27% Similarity=0.420 Sum_probs=61.8
Q ss_pred HhCCCCEEEEeCCCCCC-CHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHH---------hhCCEEEEEeCCEEEEEcCH
Q 007178 445 LIGNPKVVYMDEPSTGL-DPASRNNLWNVVKRA-KQGRAIILTTHSMEEAE---------ALCDRLGIFVDGSLQCIGNP 513 (614)
Q Consensus 445 l~~~p~vllLDEPtsgL-D~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~---------~l~dri~il~~G~l~~~g~~ 513 (614)
+.++|+++++|||+.+| ||..++.+.+.+++. ++|.+++++||+++++. +.|++.++|.+|++...|..
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR 728 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence 36899999999999999 799999999999986 56899999999999986 57999999999998777754
Q ss_pred H
Q 007178 514 K 514 (614)
Q Consensus 514 ~ 514 (614)
+
T Consensus 729 ~ 729 (818)
T PRK13830 729 E 729 (818)
T ss_pred H
Confidence 3
No 448
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.11 E-value=1.1e-10 Score=143.12 Aligned_cols=80 Identities=21% Similarity=0.255 Sum_probs=71.1
Q ss_pred cccccCCCCChhHHHHHHHHHHHh----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCE
Q 007178 423 VADKQAGKYSGGMKRRLSVAISLI----GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDR 498 (614)
Q Consensus 423 ~~~~~~~~LSgG~kqrl~ia~al~----~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dr 498 (614)
..+.++.+||||||||++||++++ .+|+++||||||+|||+..+..+.++|..+.++.+||++||+++.+ ..||+
T Consensus 1082 ~~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~-~~~d~ 1160 (1179)
T TIGR02168 1082 KKNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTM-EVADQ 1160 (1179)
T ss_pred CccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHH-HHhhh
Confidence 456788999999999999999984 6789999999999999999999999999876678999999999986 57999
Q ss_pred EEEEe
Q 007178 499 LGIFV 503 (614)
Q Consensus 499 i~il~ 503 (614)
++.+.
T Consensus 1161 ~~~~~ 1165 (1179)
T TIGR02168 1161 LYGVT 1165 (1179)
T ss_pred Heeee
Confidence 86543
No 449
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.10 E-value=1.3e-10 Score=122.15 Aligned_cols=144 Identities=16% Similarity=0.189 Sum_probs=98.6
Q ss_pred eeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q 007178 315 GLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFY 394 (614)
Q Consensus 315 ~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~ 394 (614)
=+++.++.|+.+++.||+||||||++++|+|+++|..|.+.+.. ...-....+..+++..+..
T Consensus 136 ~l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied--~~El~~~~~~~~~l~~~~~--------------- 198 (308)
T TIGR02788 136 FLRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED--TREIFLPHPNYVHLFYSKG--------------- 198 (308)
T ss_pred HHHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC--ccccCCCCCCEEEEEecCC---------------
Confidence 36788999999999999999999999999999999888877742 1110000001111111100
Q ss_pred hhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 007178 395 GRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVK 474 (614)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~ 474 (614)
... +++....-.++.+|-.+|+++++|||.+ .+.++.++
T Consensus 199 ------------------------------~~~----~~~~~~~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~ 237 (308)
T TIGR02788 199 ------------------------------GQG----LAKVTPKDLLQSCLRMRPDRIILGELRG-------DEAFDFIR 237 (308)
T ss_pred ------------------------------CCC----cCccCHHHHHHHHhcCCCCeEEEeccCC-------HHHHHHHH
Confidence 000 1111122245667888999999999996 45677777
Q ss_pred HhcCCc-eEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHH
Q 007178 475 RAKQGR-AIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 517 (614)
Q Consensus 475 ~~~~g~-tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 517 (614)
....|. +++.|+|..+.. ...||+..|..|++.+.|.+.+..
T Consensus 238 a~~~g~~~~i~T~Ha~~~~-~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 238 AVNTGHPGSITTLHAGSPE-EAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHhcCCCeEEEEEeCCCHH-HHHHHHHHHhhccccccCCCHHHH
Confidence 765654 679999999854 459999999999998888776654
No 450
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.07 E-value=8.2e-10 Score=103.36 Aligned_cols=131 Identities=18% Similarity=0.230 Sum_probs=84.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchh
Q 007178 325 CFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA 404 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~ 404 (614)
++.|.||||+||||+++.+++...+..|.+.+.+.+..... ..++.. .. .
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~---------------------~~~~~~---~~---~--- 50 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEE---------------------LTERLI---GE---S--- 50 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHH---------------------HHHHHh---hh---h---
Confidence 36899999999999999999988776666654433221110 011110 00 0
Q ss_pred HHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCC----------CCCCHHHHHHHHHHHH
Q 007178 405 LTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPS----------TGLDPASRNNLWNVVK 474 (614)
Q Consensus 405 ~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPt----------sgLD~~~~~~i~~~l~ 474 (614)
.....+.. ..........+.+..++...+++...+|+++++|||+ ++.|+..++.+.+++.
T Consensus 51 ----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 121 (165)
T cd01120 51 ----LKGALDNL-----IIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLE 121 (165)
T ss_pred ----hccccccE-----EEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 00000111 1222333345566677888899999999999999999 4566666777777777
Q ss_pred Hhc-CCceEEEEcCCHHHHHh
Q 007178 475 RAK-QGRAIILTTHSMEEAEA 494 (614)
Q Consensus 475 ~~~-~g~tIil~TH~~~e~~~ 494 (614)
..+ .+.++++++|.....+.
T Consensus 122 ~~~~~~~~vv~~~~~~~~~~~ 142 (165)
T cd01120 122 RARKGGVTVIFTLQVPSGDKG 142 (165)
T ss_pred HHhcCCceEEEEEecCCcccc
Confidence 765 48999999998765443
No 451
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.02 E-value=1e-10 Score=126.50 Aligned_cols=52 Identities=15% Similarity=0.288 Sum_probs=48.2
Q ss_pred cceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcc-EEEEcCeeCCC
Q 007178 310 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG-TAYVQGLDIRT 363 (614)
Q Consensus 310 ~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG-~i~i~G~~i~~ 363 (614)
+.||+++|+++++||+++|+||||||||||+| .|+.+|++| +|.++|.++..
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~ 71 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFS 71 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCC
Confidence 36899999999999999999999999999999 788888888 79999999864
No 452
>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A.
Probab=99.01 E-value=4.9e-11 Score=124.59 Aligned_cols=166 Identities=22% Similarity=0.387 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHchHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcceeeeccchHHHHHHHHHHHHHHHHH
Q 007178 32 ILTALVYEKQQKLRIMMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTLNSYGIQFVFYIIYINLQIAL 111 (614)
Q Consensus 32 ~~~~iV~Eke~~~k~~~~~~Gl~~~~yWl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~s~i~~ 111 (614)
.+..+++|||+|+++.++++|+++..||+++++++++++++..++++++ +++...++..++...++++++|+++.+++
T Consensus 178 ~~~~i~~ek~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~i--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 255 (344)
T PF12698_consen 178 IAMSIVEEKESGTRERLLSSGVSPWSYWLSKFLAYFLVSLIQSLIIIII--IFGISGIPFGNFLLLLLLLLLFSLAFISF 255 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hchhhhhHhhhhhhHhhhcccCCHHHHHHHHHHHHhhHHHHHHHHHHHH--HhccccCcccchHHHHHHHHHHHHHHHHH
Confidence 4668999999999999999999999999999988777665544433332 23311233335666778899999999999
Q ss_pred HHHHHHhcCchhHHHHHHHHHHH-HhhHHHHHHHHhhhcCCCcchhhhhhhcccchhHHHHHHHHHHhhhhcccCCCCCC
Q 007178 112 AFLVAALFSNVKTASVIGYICVF-GTGLLGAFLLQSFVEDPSFPRRWITAMELYPGFALYRGLYEFGTYSFRGHSMGTDG 190 (614)
Q Consensus 112 ~~l~S~ff~~~~~a~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (614)
++++|.+|++++.|..++.++.+ ..+..+.+ . . ....+..+..+..++|.+++..++..+.. +
T Consensus 256 ~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~-~~~~~~~~~~i~~~~P~~~~~~~~~~~~~-----------~ 319 (344)
T PF12698_consen 256 GFLISSFFKNSSTAISVASIIILLLSFLSGGF-F---P-LSSLPSFLQWISSFLPFYWFIQGLRNIIY-----------G 319 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-H---h-HHhhHHHHHHHHHHhhHHHHHHHHHHHHH-----------h
Confidence 99999999999888655443333 22111111 1 0 11123333445678899888777655431 1
Q ss_pred CccccCCCCccchHHHHHHHHHHHHHHHHHHHH
Q 007178 191 MSWADLSDSENGMKEVLIIMFVEWLLLLGIAYY 223 (614)
Q Consensus 191 ~~w~~~~~~~~~~~~~~~~m~~~~~l~~ll~~y 223 (614)
. |.+ ....++++++.+++++++++|
T Consensus 320 ~-~~~-------~~~~~~~l~~~~~v~~~l~~~ 344 (344)
T PF12698_consen 320 D-WSE-------IWISLIILLLFAVVYLLLAIL 344 (344)
T ss_dssp ---------------------------------
T ss_pred c-HHH-------HHHHHHHHHHHHHHHHHHHhC
Confidence 1 111 224567788889999888875
No 453
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.97 E-value=1.1e-09 Score=134.26 Aligned_cols=81 Identities=14% Similarity=0.071 Sum_probs=71.3
Q ss_pred cccccCCCCChhHHHHHHHHHHHhC----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCE
Q 007178 423 VADKQAGKYSGGMKRRLSVAISLIG----NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDR 498 (614)
Q Consensus 423 ~~~~~~~~LSgG~kqrl~ia~al~~----~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dr 498 (614)
...+++..||||||+++++|++++. +|++++||||++|||+..+..+.++|.+..++..+|++||+.... .+||+
T Consensus 1067 ~~~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~-~~~d~ 1145 (1164)
T TIGR02169 1067 KPVQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMI-EYADR 1145 (1164)
T ss_pred CCCCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHH-Hhcce
Confidence 3456678999999999999999984 789999999999999999999999999887778899999998755 68999
Q ss_pred EEEEeC
Q 007178 499 LGIFVD 504 (614)
Q Consensus 499 i~il~~ 504 (614)
++.+..
T Consensus 1146 ~~~~~~ 1151 (1164)
T TIGR02169 1146 AIGVTM 1151 (1164)
T ss_pred eEeEEE
Confidence 976653
No 454
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.94 E-value=6.8e-09 Score=104.74 Aligned_cols=155 Identities=19% Similarity=0.210 Sum_probs=87.9
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHh-CCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhh
Q 007178 319 ALPSGECFGMLGPNGAGKTTFISMMI-GITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRL 397 (614)
Q Consensus 319 ~i~~Gei~~LlG~NGaGKTTll~~l~-Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~ 397 (614)
-+++|.++.+.|++||||||+...++ +..+ ..+.+.+ +..+ -+.++.+.-..++
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~~~y------------------~~~e------~~~~~~~~~~~~~ 75 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK-QGKKVYV------------------ITTE------NTSKSYLKQMESV 75 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHh-CCCEEEE------------------EEcC------CCHHHHHHHHHHC
Confidence 68999999999999999999998774 2222 2233332 2221 1222222111111
Q ss_pred cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhC--CCCEEEEeCCCCC---CCHHHHHHHHHH
Q 007178 398 KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG--NPKVVYMDEPSTG---LDPASRNNLWNV 472 (614)
Q Consensus 398 ~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~--~p~vllLDEPtsg---LD~~~~~~i~~~ 472 (614)
+..-.+ ...+..+....+ .-......|.++++.+..++..+. +|+++++||||+. .|+...+++.+.
T Consensus 76 -g~~~~~--~~~~g~l~i~~~-----~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~ 147 (234)
T PRK06067 76 -KIDISD--FFLWGYLRIFPL-----NTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTE 147 (234)
T ss_pred -CCChhH--HHhCCCceEEec-----cccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHH
Confidence 111000 000000111111 112234457789999999999997 9999999999964 455555555555
Q ss_pred HHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCE
Q 007178 473 VKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGS 506 (614)
Q Consensus 473 l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~ 506 (614)
++.+ ++|.|+++++|+..+....++++..+.+|.
T Consensus 148 l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~Dgv 182 (234)
T PRK06067 148 AKNLVDLGKTILITLHPYAFSEELLSRIRSICDVY 182 (234)
T ss_pred HHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEE
Confidence 6554 468999999998765333333333333443
No 455
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.88 E-value=2.2e-08 Score=109.42 Aligned_cols=179 Identities=20% Similarity=0.282 Sum_probs=115.9
Q ss_pred cceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc---HHH------hhcceEEEcCCCC
Q 007178 310 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD---MDR------IYTSMGVCPQEDL 380 (614)
Q Consensus 310 ~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~---~~~------~~~~ig~~~Q~~~ 380 (614)
..+++++ +.+.+||.++|+|+||+|||||+++|+|..+|+.|.+...|+.-+.- .+. .++.+-++.+.+.
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~ 229 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQ 229 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCC
Confidence 5799999 99999999999999999999999999999999998877766543221 111 1122333333221
Q ss_pred CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCC--C
Q 007178 381 LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEP--S 458 (614)
Q Consensus 381 l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEP--t 458 (614)
++.+...- ...--.+.+.+..-|-. .=-...+++- .+=|.-=++ +.+.|| +
T Consensus 230 -----~p~~r~~~---------~~~a~t~AE~frd~G~~----Vll~~DslTr-----~A~A~REis----l~~ge~P~~ 282 (440)
T TIGR01026 230 -----SPLLRLKG---------AYVATAIAEYFRDQGKD----VLLLMDSVTR-----FAMAQREIG----LAAGEPPAT 282 (440)
T ss_pred -----CHHHHHHH---------HHHHHHHHHHHHHCCCC----EEEEEeChHH-----HHHHHHHHH----HhcCCCCcc
Confidence 22222211 11122233334333431 1112233332 111111111 345675 5
Q ss_pred CCCCHHHHHHHHHHHHHhc-CCc-------eEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 459 TGLDPASRNNLWNVVKRAK-QGR-------AIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 459 sgLD~~~~~~i~~~l~~~~-~g~-------tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
.|.||.....+.+++.+.. .+. ||++.+||++ +.+||++..+.+|+++.++...+...
T Consensus 283 ~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~--dpi~d~~~~i~dG~ivLsr~la~~~~ 348 (440)
T TIGR01026 283 KGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN--EPIADSVRGILDGHIVLSRALAQRGH 348 (440)
T ss_pred cccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC--cchhhhhccccceEEEEecchhhCCc
Confidence 6999999999999999864 456 8999999985 56899999999999999998877543
No 456
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.87 E-value=6.4e-10 Score=111.70 Aligned_cols=166 Identities=20% Similarity=0.205 Sum_probs=84.1
Q ss_pred eeeee-eEEEeCCcEEEEECCCCCcHHHHHHHHh-CCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHH
Q 007178 312 AVNGL-SLALPSGECFGMLGPNGAGKTTFISMMI-GITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 389 (614)
Q Consensus 312 ~l~~i-sl~i~~Gei~~LlG~NGaGKTTll~~l~-Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e 389 (614)
-||++ .=-+++|+++.|.|++|+||||+...++ ...++..+.+++..........+..+.+|+.+|+....+.+.+.|
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~~~i~~~~~~~g~~~~~~~~~~~l~i~d 87 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESRESIIRQAAQFGMDFEKAIEEGKLVIID 87 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHhCCCHHHHhhcCCEEEEE
Confidence 34443 3368999999999999999999987554 223455566777764332222222345666555432222222222
Q ss_pred HHHH----HhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHH
Q 007178 390 HLLF----YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPAS 465 (614)
Q Consensus 390 ~l~~----~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~ 465 (614)
.+.. .....+.+.++...++.++++..+.. ..++++-.+..+++|||+ ..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------------------~~~vvIDsl~~l~~~~~~-----~~ 141 (229)
T TIGR03881 88 ALMKEKEDEWSLRELSIEELLNKVIEAKKYLGYG---------------------HARLVIDSMSAFWLDKPA-----MA 141 (229)
T ss_pred ccccccccccccccCCHHHHHHHHHHHHHhhccC---------------------ceEEEecCchhhhccChH-----HH
Confidence 1100 00001112222333333333332210 022333334444444442 23
Q ss_pred HHHHHHHHHHhc-CCceEEEEcCCHH--------HHHhhCCEEEEEe
Q 007178 466 RNNLWNVVKRAK-QGRAIILTTHSME--------EAEALCDRLGIFV 503 (614)
Q Consensus 466 ~~~i~~~l~~~~-~g~tIil~TH~~~--------e~~~l~dri~il~ 503 (614)
|+.++++.+.++ .|.|+++++|... .++.+||.|+.|+
T Consensus 142 r~~~~~l~~~l~~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~ 188 (229)
T TIGR03881 142 RKYSYYLKRVLNRWNFTILLTSQYAITTSQAFGFGIEHVADGIIRFR 188 (229)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecccccCCCCcccceEEEEeEEEEEE
Confidence 444455554444 5999999999654 3455677777776
No 457
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.87 E-value=1.9e-09 Score=116.95 Aligned_cols=172 Identities=17% Similarity=0.265 Sum_probs=107.6
Q ss_pred cceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEE---EcCeeCCCcH-------HHhhcceEEEcCCC
Q 007178 310 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY---VQGLDIRTDM-------DRIYTSMGVCPQED 379 (614)
Q Consensus 310 ~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~---i~G~~i~~~~-------~~~~~~ig~~~Q~~ 379 (614)
..|++++ +++.+||+++|+|+||+|||||+++|+|+.+|+.+.+- .+|.++..-. ...|..++++||+.
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 5799999 99999999999999999999999999999999864333 3333332211 11245799999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCC--
Q 007178 380 LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEP-- 457 (614)
Q Consensus 380 ~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEP-- 457 (614)
..+..+++.+++...+.+.+...++ ++=. ++ -..+.+.. .|-+++ .+.||
T Consensus 222 s~~~rl~a~e~a~~iAEyfr~~g~~-------Vll~--~D---sltr~a~A-----~REisl-----------~~ge~P~ 273 (434)
T PRK07196 222 SPLMRIKATELCHAIATYYRDKGHD-------VLLL--VD---SLTRYAMA-----QREIAL-----------SLGEPPA 273 (434)
T ss_pred ChhhhHHHHHHHHHHHHHhhhccCC-------EEEe--ec---chhHHHhh-----hhHHHH-----------hcCCCCc
Confidence 9999999999998877654311110 0000 00 00000000 011111 23343
Q ss_pred CCCCCHHHHHHHHHHHHHhc--C--C-ce----EEEEcCCHHHHHhhCCEEEEEeCCEEEEEcC
Q 007178 458 STGLDPASRNNLWNVVKRAK--Q--G-RA----IILTTHSMEEAEALCDRLGIFVDGSLQCIGN 512 (614)
Q Consensus 458 tsgLD~~~~~~i~~~l~~~~--~--g-~t----Iil~TH~~~e~~~l~dri~il~~G~l~~~g~ 512 (614)
+-|-.|..-..+-.++.+.. + | .| |++-.-|+. +-++|.+.-+-||+|+.+-.
T Consensus 274 ~~Gyp~svf~~l~~l~ERag~~~~~GSIT~~~tVl~~~dD~~--dpi~d~~~~ilDG~ivLsr~ 335 (434)
T PRK07196 274 TKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQ--DPIVDCARAVLDGHIVLSRK 335 (434)
T ss_pred ccCcCHHHHHHhHHHHHHhhcCCCCEEeeeeeEEEccCCCCC--CchhHhhhhhcceEEEEcHH
Confidence 34677777777777777641 2 3 23 333334444 45678777788999988643
No 458
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.87 E-value=8.7e-11 Score=130.84 Aligned_cols=160 Identities=21% Similarity=0.258 Sum_probs=106.6
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHH--hCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhh
Q 007178 319 ALPSGECFGMLGPNGAGKTTFISMM--IGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGR 396 (614)
Q Consensus 319 ~i~~Gei~~LlG~NGaGKTTll~~l--~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~ 396 (614)
-+++|.++.|.||+||||||+..-. .|..++.+.-+++....-..+..+..+++|+-.|+..-- +++.+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~------g~l~~--- 87 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKLVDE------GKLFI--- 87 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHHhhc------CceEE---
Confidence 6889999999999999999999765 566665566677776533222222334566544421100 00100
Q ss_pred hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHH--HHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 007178 397 LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA--ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVK 474 (614)
Q Consensus 397 ~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia--~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~ 474 (614)
+.. .. ......+++.+++. +..++...++|+|++||+.|+ .++...|+.. +..|+.++++++
T Consensus 88 ~~~-~~---~~~~~~~~~~~~l~--~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~ 151 (484)
T TIGR02655 88 LDA-SP---DPEGQDVVGGFDLS--ALIERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVA 151 (484)
T ss_pred Eec-Cc---hhccccccccCCHH--HHHHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHH
Confidence 000 00 01112244556664 367888889999999999999 6666655444 578889999998
Q ss_pred Hhc-CCceEEEEcCCHHH--------H-HhhCCEEEEEe
Q 007178 475 RAK-QGRAIILTTHSMEE--------A-EALCDRLGIFV 503 (614)
Q Consensus 475 ~~~-~g~tIil~TH~~~e--------~-~~l~dri~il~ 503 (614)
.++ .|.|+|++||++++ + +.+||.|+.|+
T Consensus 152 ~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 152 RLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 864 69999999999865 2 66899999887
No 459
>PRK02224 chromosome segregation protein; Provisional
Probab=98.85 E-value=5.5e-09 Score=124.99 Aligned_cols=78 Identities=24% Similarity=0.349 Sum_probs=67.2
Q ss_pred cCCCCChhHHH------HHHHHHHHhCC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCc-eEEEEcCCHHHH
Q 007178 427 QAGKYSGGMKR------RLSVAISLIGN-----P-KVVYMDEPSTGLDPASRNNLWNVVKRAK-QGR-AIILTTHSMEEA 492 (614)
Q Consensus 427 ~~~~LSgG~kq------rl~ia~al~~~-----p-~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~-tIil~TH~~~e~ 492 (614)
.+..||||||+ |+++|++++.+ | +++|+||||++||+..+..+.++|..+. .|. +||++||+++.+
T Consensus 778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~ 857 (880)
T PRK02224 778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELV 857 (880)
T ss_pred ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHH
Confidence 46799999999 88999888853 2 6799999999999999999999998864 454 899999999988
Q ss_pred HhhCCEEEEEeCC
Q 007178 493 EALCDRLGIFVDG 505 (614)
Q Consensus 493 ~~l~dri~il~~G 505 (614)
. .||+++.+...
T Consensus 858 ~-~ad~~~~~~~~ 869 (880)
T PRK02224 858 G-AADDLVRVEKD 869 (880)
T ss_pred H-hcCeeEEeecC
Confidence 6 69999999644
No 460
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.84 E-value=7.7e-08 Score=91.62 Aligned_cols=83 Identities=17% Similarity=0.213 Sum_probs=65.5
Q ss_pred ccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEE
Q 007178 424 ADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF 502 (614)
Q Consensus 424 ~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il 502 (614)
..+.....|-||-=---+.+.+- +.-+.|||||-++|.|.-+-.+...|+++ +.|.-||+.||+.=...-=.-+|.-+
T Consensus 123 ~~~sLh~~SHGEsf~~i~~~rf~-~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~ 201 (233)
T COG3910 123 GGRSLHHMSHGESFLAIFHNRFN-GQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEI 201 (233)
T ss_pred CCcchhhhccchHHHHHHHHHhc-cCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEE
Confidence 45556678999977666666654 57899999999999999999999999996 56999999999986654334567766
Q ss_pred eCCEE
Q 007178 503 VDGSL 507 (614)
Q Consensus 503 ~~G~l 507 (614)
+.+.+
T Consensus 202 ~~~g~ 206 (233)
T COG3910 202 SESGI 206 (233)
T ss_pred ecCCc
Confidence 66654
No 461
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.82 E-value=3.8e-09 Score=103.70 Aligned_cols=114 Identities=13% Similarity=0.102 Sum_probs=71.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchh
Q 007178 325 CFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA 404 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~ 404 (614)
++||.||||||||||.++|++++ ..|.+.+ +++++. +..++..+.........+.+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v------------------~~~D~~-~~~~~~~~~~~~~~~~~~~~~~~ 59 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVI------------------ISQDSY-YKDLSHEELEERKNNNYDHPDAF 59 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEE------------------EEeccc-ccccccccHHHhccCCCCCCCcc
Confidence 58999999999999999999988 3344433 333321 11122222222111111111111
Q ss_pred HHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHH
Q 007178 405 LTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA 464 (614)
Q Consensus 405 ~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~ 464 (614)
..+...+.++.+... +..+.+..++|.|++++..+ .+.+++++|+|+|..+.++.
T Consensus 60 ~~~~~~~~l~~l~~~--~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~ 114 (198)
T cd02023 60 DFDLLISHLQDLKNG--KSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKE 114 (198)
T ss_pred cHHHHHHHHHHHHCC--CCEeccccccccCcccCCce---ecCCCCEEEEechhhccchh
Confidence 223444566666554 35678888999999876655 57889999999999999873
No 462
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.77 E-value=7.4e-09 Score=100.85 Aligned_cols=84 Identities=14% Similarity=0.044 Sum_probs=61.8
Q ss_pred eeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCC--CCCCCCCCHHH
Q 007178 312 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQE--DLLWETLTGRE 389 (614)
Q Consensus 312 ~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~--~~l~~~lTv~e 389 (614)
..+=+.+.+++|+.++|+||||||||||+++|+|+++|+.|.|.+.+..-... ..+..+++..|. +...+..|..+
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQL--PHPNWVRLVTRPGNVEGSGEVTMAD 91 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCC--CCCCEEEEEEecCCCCCCCccCHHH
Confidence 44455678899999999999999999999999999999999999977432211 112345565544 34566788888
Q ss_pred HHHHHhhh
Q 007178 390 HLLFYGRL 397 (614)
Q Consensus 390 ~l~~~~~~ 397 (614)
.+....+.
T Consensus 92 ~l~~~lR~ 99 (186)
T cd01130 92 LLRSALRM 99 (186)
T ss_pred HHHHHhcc
Confidence 88765543
No 463
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.77 E-value=1.1e-08 Score=109.75 Aligned_cols=63 Identities=22% Similarity=0.342 Sum_probs=57.8
Q ss_pred CCCChhHHHHHHHHHHHhC---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHH
Q 007178 429 GKYSGGMKRRLSVAISLIG---------NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAE 493 (614)
Q Consensus 429 ~~LSgG~kqrl~ia~al~~---------~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~ 493 (614)
..+|.||||++.+|++|+. +|+++|||||+++||+..++.+++.|.+. |..+++|||+++.+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHLK 345 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhcc
Confidence 3699999999999999999 99999999999999999999999999754 679999999988655
No 464
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.77 E-value=2.1e-08 Score=98.68 Aligned_cols=57 Identities=21% Similarity=0.303 Sum_probs=44.1
Q ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEe
Q 007178 440 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV 503 (614)
Q Consensus 440 ~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~ 503 (614)
++++||..+|+++++|||. |++. +...++....|..++.|+|..+.++ ..||+..|.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~---~~~~l~~a~~G~~v~~t~Ha~~~~~-~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLET---IRLALTAAETGHLVMSTLHTNSAAK-TIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHH---HHHHHHHHHcCCEEEEEecCCcHHH-HHhHHHhhc
Confidence 4788999999999999996 5553 4444544567999999999998765 579987664
No 465
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.75 E-value=2.1e-07 Score=83.63 Aligned_cols=117 Identities=26% Similarity=0.382 Sum_probs=82.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCCCCc-cEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC
Q 007178 322 SGECFGMLGPNGAGKTTFISMMIGITRTTS-GTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL 400 (614)
Q Consensus 322 ~Gei~~LlG~NGaGKTTll~~l~Gl~~p~s-G~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~ 400 (614)
++..+.|.||+|+||||+++.|+....... +-+.++.............
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------------------------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------------------------------
Confidence 367899999999999999999999887654 4555555433211111000
Q ss_pred CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHH------HHH
Q 007178 401 KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN------VVK 474 (614)
Q Consensus 401 ~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~------~l~ 474 (614)
. ...........+++..+..+++|--.+|+++++||+..-.+......... ...
T Consensus 51 ------------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~ 110 (148)
T smart00382 51 ------------------L--IIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLL 110 (148)
T ss_pred ------------------h--hhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHH
Confidence 0 12233445677888888888888888899999999999999988877654 122
Q ss_pred H-hcCCceEEEEcCC
Q 007178 475 R-AKQGRAIILTTHS 488 (614)
Q Consensus 475 ~-~~~g~tIil~TH~ 488 (614)
. ...+..+|.++|.
T Consensus 111 ~~~~~~~~~i~~~~~ 125 (148)
T smart00382 111 LKSEKNLTVILTTND 125 (148)
T ss_pred HHhcCCCEEEEEeCC
Confidence 2 3457889999884
No 466
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.75 E-value=2.2e-08 Score=108.83 Aligned_cols=85 Identities=15% Similarity=0.274 Sum_probs=69.8
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcC---eeCCC---
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG---LDIRT--- 363 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G---~~i~~--- 363 (614)
+.++.+++++.|.. ...+++.++ .+.+||+++|+||||+|||||+++|+|+.+|+.|.+.+.| .++..
T Consensus 138 ~~~~r~~v~~~l~T-----Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~ 211 (450)
T PRK06002 138 PAMTRARVETGLRT-----GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLE 211 (450)
T ss_pred CCeEeecceEEcCC-----CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhH
Confidence 46899999999974 367999996 9999999999999999999999999999999999998865 55432
Q ss_pred -cHHH-hhcceEEEcCCCC
Q 007178 364 -DMDR-IYTSMGVCPQEDL 380 (614)
Q Consensus 364 -~~~~-~~~~ig~~~Q~~~ 380 (614)
.... .++.+++++|.+.
T Consensus 212 ~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 212 DTLADNLKKAVAVVATSDE 230 (450)
T ss_pred HHHHHhhCCeEEEEEcCCC
Confidence 1112 2367999999764
No 467
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.63 E-value=7e-07 Score=105.97 Aligned_cols=54 Identities=28% Similarity=0.423 Sum_probs=49.2
Q ss_pred HHHHHhCCCCEEEEeCCCCCC-CHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHh
Q 007178 441 VAISLIGNPKVVYMDEPSTGL-DPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEA 494 (614)
Q Consensus 441 ia~al~~~p~vllLDEPtsgL-D~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~ 494 (614)
+++++.++|+++++|||+.+| ||..++.+.+.++.. ++|.+++++||+++++..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 677889999999999999999 799999999999886 568999999999998875
No 468
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.58 E-value=1.5e-07 Score=95.34 Aligned_cols=46 Identities=26% Similarity=0.402 Sum_probs=38.2
Q ss_pred HhCCCCEEEEeCCCC------CCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHH
Q 007178 445 LIGNPKVVYMDEPST------GLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEE 491 (614)
Q Consensus 445 l~~~p~vllLDEPts------gLD~~~~~~i~~~l~~~-~-~g~tIil~TH~~~e 491 (614)
...+|+++++| |.+ ..|+...+.+++.+.++ + .|.+|++++|....
T Consensus 108 ~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~ 161 (239)
T cd01125 108 LIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKG 161 (239)
T ss_pred HhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCcc
Confidence 36899999999 765 47999999999999875 3 48999999998653
No 469
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.56 E-value=1.3e-07 Score=103.05 Aligned_cols=167 Identities=16% Similarity=0.262 Sum_probs=109.1
Q ss_pred cceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-CccEEEEcC---eeCCCcH-HHh---hcceEEE-----c
Q 007178 310 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-TSGTAYVQG---LDIRTDM-DRI---YTSMGVC-----P 376 (614)
Q Consensus 310 ~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-~sG~i~i~G---~~i~~~~-~~~---~~~ig~~-----~ 376 (614)
..|+|++ +++.+||.++|+|+||+|||||+++|+|+.++ +.|.+.+.| .++..-. +.. ..+.+++ +
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~ 230 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSD 230 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCC
Confidence 5699998 99999999999999999999999999999854 446666645 4443211 111 1234555 8
Q ss_pred CCCC--CCCCCCHHHHHHHHhhhcCCC---chhHHHHHHHHHHHcCCC---CCCcccccCCCCChhHHHHHHHHHHHhCC
Q 007178 377 QEDL--LWETLTGREHLLFYGRLKNLK---GPALTQAVEESLKSVNLF---HGGVADKQAGKYSGGMKRRLSVAISLIGN 448 (614)
Q Consensus 377 Q~~~--l~~~lTv~e~l~~~~~~~~~~---~~~~~~~~~~~l~~~~L~---~~~~~~~~~~~LSgG~kqrl~ia~al~~~ 448 (614)
|++. +.+.+ +...+.-+.+.+|.. ..+...+..++++.++|. .......+++.+|. ++
T Consensus 231 q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS~-------l~------ 296 (442)
T PRK06315 231 QSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFST-------LP------ 296 (442)
T ss_pred CCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhhH-------hH------
Confidence 8753 34444 445555454444433 255678888999999983 11345666666653 11
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh---cCC-----ceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHH
Q 007178 449 PKVVYMDEPSTGLDPASRNNLWNVVKRA---KQG-----RAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 515 (614)
Q Consensus 449 p~vllLDEPtsgLD~~~~~~i~~~l~~~---~~g-----~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~ 515 (614)
.++.+. .+| -||++..+|+++. ++|.+.-+-||+++.+....+
T Consensus 297 ----------------------~llERag~~~~GSITai~tVl~~gdD~~dp--i~d~~~~i~dg~ivLsr~la~ 347 (442)
T PRK06315 297 ----------------------KLLERSGASDKGTITAFYTVLVAGDDMNEP--VADEVKSILDGHIVLSNALAQ 347 (442)
T ss_pred ----------------------HHHHHhcCCCCcceeeeEEEEecCCCCCcc--cHHHhhhhcceEEEEeccHHH
Confidence 111111 123 2677777888754 688888889999998766544
No 470
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.54 E-value=1.7e-07 Score=110.85 Aligned_cols=148 Identities=22% Similarity=0.256 Sum_probs=92.6
Q ss_pred cceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCC-CCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHH
Q 007178 310 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT-RTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 388 (614)
Q Consensus 310 ~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~-~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~ 388 (614)
..+-+|+++. +.+.+..|.|||++||||++|.++-.. -+..|. +||=... .+++.
T Consensus 595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~--------------------~VPa~~a---~i~~~ 650 (854)
T PRK05399 595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIGS--------------------FVPAESA---RIGIV 650 (854)
T ss_pred ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcCC--------------------ceeccce---Eeccc
Confidence 3567888888 778899999999999999999986431 112221 2232111 01111
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhC--CCCEEEEeCC---CCCCCH
Q 007178 389 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG--NPKVVYMDEP---STGLDP 463 (614)
Q Consensus 389 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~--~p~vllLDEP---tsgLD~ 463 (614)
+.+ +-++|- .|.....+|.-|.....++.+|-. +++++|+||| |+.+|.
T Consensus 651 d~I---------------------~triga-----~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg 704 (854)
T PRK05399 651 DRI---------------------FTRIGA-----SDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDG 704 (854)
T ss_pred Cee---------------------eeccCc-----ccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchh
Confidence 111 112222 233445577777777777776654 8999999999 888884
Q ss_pred HHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEE
Q 007178 464 ASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCI 510 (614)
Q Consensus 464 ~~~~~i~~~l~~~~-~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~ 510 (614)
.+ ..|.+++.+. . |.+++++||+ .++.+++++.--+.+..+.+.
T Consensus 705 ~a--ia~aile~l~~~~~~~~l~aTH~-~el~~l~~~~~~v~n~~m~~~ 750 (854)
T PRK05399 705 LS--IAWAVAEYLHDKIGAKTLFATHY-HELTELEEKLPGVKNVHVAVK 750 (854)
T ss_pred HH--HHHHHHHHHHhcCCceEEEEech-HHHHHHhhhcCCeEEEEEEEE
Confidence 43 4667777653 3 5789999999 556667876433344444443
No 471
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.52 E-value=7.1e-08 Score=93.19 Aligned_cols=67 Identities=18% Similarity=0.257 Sum_probs=47.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHH
Q 007178 322 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLL 392 (614)
Q Consensus 322 ~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~ 392 (614)
+||+++++|+|||||||++++|+|++.+ +.++|.++.......+...|+.+|+...++..++.++..
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~ 68 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDAS 68 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHH
Confidence 5999999999999999999999999887 588998875432222223566666654444444444444
No 472
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.51 E-value=1.6e-07 Score=116.26 Aligned_cols=65 Identities=20% Similarity=0.368 Sum_probs=56.9
Q ss_pred cccccCCCCChhHHHHHH----HHHH--------HhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCH
Q 007178 423 VADKQAGKYSGGMKRRLS----VAIS--------LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSM 489 (614)
Q Consensus 423 ~~~~~~~~LSgG~kqrl~----ia~a--------l~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~ 489 (614)
..++..+.||||||||++ +|++ +..+|++++|||||+|+|+.+++.+++++.++ |.++|++||.+
T Consensus 1240 ~~~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l--~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1240 PLTHRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL--DLDFVMTSERE 1316 (1353)
T ss_pred chhccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh--CCCEEEEccch
Confidence 456668999999999996 5644 55899999999999999999999999999887 68899999975
No 473
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.50 E-value=3.3e-07 Score=109.93 Aligned_cols=79 Identities=27% Similarity=0.352 Sum_probs=66.6
Q ss_pred ccCCCCChhHHHHHHHHHHH------hCC--CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhC
Q 007178 426 KQAGKYSGGMKRRLSVAISL------IGN--PKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALC 496 (614)
Q Consensus 426 ~~~~~LSgG~kqrl~ia~al------~~~--p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~ 496 (614)
+++.+||||++-.++||.+| .++ -++++|||||..||+..++.+.++|..+. .+++|++|||+-+..+ .+
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e-~~ 889 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKE-RA 889 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHH-hC
Confidence 68899999999977766654 466 69999999999999999999999999875 5899999999976655 58
Q ss_pred CEEEEEeCC
Q 007178 497 DRLGIFVDG 505 (614)
Q Consensus 497 dri~il~~G 505 (614)
|+++.+...
T Consensus 890 ~~~i~V~k~ 898 (908)
T COG0419 890 DVRIRVKKD 898 (908)
T ss_pred CeEEEEEec
Confidence 887776643
No 474
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.46 E-value=7.5e-08 Score=90.05 Aligned_cols=140 Identities=16% Similarity=0.089 Sum_probs=76.3
Q ss_pred EEEECCCCCcHHHHHHHHh--CCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCC-CCCC-----------------CCC
Q 007178 326 FGMLGPNGAGKTTFISMMI--GITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQE-DLLW-----------------ETL 385 (614)
Q Consensus 326 ~~LlG~NGaGKTTll~~l~--Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~-~~l~-----------------~~l 385 (614)
++++|++|||||||++.|+ +..++.+|+..... +.... .... .+..-+ +.+- ..+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~-~~~~~--~~~~--~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~ 76 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQ-LINFF--NVND--KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYL 76 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcce-eEEEE--EccC--eEEEecCCCccccccCHHHHHHHHHHHHHHH
Confidence 6899999999999999999 67777777642211 10000 0000 111111 1100 001
Q ss_pred CHHHHHHHHhhhc--CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH-----HhCCCCEEEEeCCC
Q 007178 386 TGREHLLFYGRLK--NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS-----LIGNPKVVYMDEPS 458 (614)
Q Consensus 386 Tv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~a-----l~~~p~vllLDEPt 458 (614)
+.++++.....+- .........++.+.++..+..- -....+...+|++++++...... ....++++ |+
T Consensus 77 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~v-i~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~ 151 (170)
T cd01876 77 ENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPF-LVVLTKADKLKKSELAKALKEIKKELKLFEIDPPII----LF 151 (170)
T ss_pred HhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCE-EEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceE----EE
Confidence 1112221111110 1111233344556666666431 12345577789998877765554 24456666 99
Q ss_pred CCCCHHHHHHHHHHHHH
Q 007178 459 TGLDPASRNNLWNVVKR 475 (614)
Q Consensus 459 sgLD~~~~~~i~~~l~~ 475 (614)
|++|+...+++++.|.+
T Consensus 152 Sa~~~~~~~~l~~~l~~ 168 (170)
T cd01876 152 SSLKGQGIDELRALIEK 168 (170)
T ss_pred ecCCCCCHHHHHHHHHH
Confidence 99999999999999875
No 475
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.46 E-value=4.7e-06 Score=98.72 Aligned_cols=51 Identities=29% Similarity=0.411 Sum_probs=45.3
Q ss_pred HHhCCCCEEEEeCCCCCCC-HHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHh
Q 007178 444 SLIGNPKVVYMDEPSTGLD-PASRNNLWNVVKRA-KQGRAIILTTHSMEEAEA 494 (614)
Q Consensus 444 al~~~p~vllLDEPtsgLD-~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~ 494 (614)
.+.++|.++++|||..+|| |..++.+.+.++.. +.|..++++||+++++..
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~ 690 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDASK 690 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHh
Confidence 4678999999999999999 99999999999886 568899999999988654
No 476
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.46 E-value=7.1e-07 Score=102.20 Aligned_cols=111 Identities=24% Similarity=0.337 Sum_probs=77.0
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCCCCccE--------EEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHH
Q 007178 321 PSGECFGMLGPNGAGKTTFISMMIGITRTTSGT--------AYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLL 392 (614)
Q Consensus 321 ~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~--------i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~ 392 (614)
...+.+.|+||||+||||+.+++.+..++..|+ +.++|.++..+...+ ++-.
T Consensus 173 ~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i--------------------~~~l 232 (615)
T TIGR02903 173 PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREV--------------------TNPL 232 (615)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHH--------------------hHHh
Confidence 345679999999999999999999988765543 666665442111111 0111
Q ss_pred HHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHH
Q 007178 393 FYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNV 472 (614)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~ 472 (614)
+. . ..+...+...+.++.+|+. ...+..+.++||| +|+||| +..||+..+..+.+.
T Consensus 233 lg-~----~~~~~~~~a~~~l~~~gl~--~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~ 288 (615)
T TIGR02903 233 LG-S----VHDPIYQGARRDLAETGVP--EPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKV 288 (615)
T ss_pred cC-C----ccHHHHHHHHHHHHHcCCC--chhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHH
Confidence 10 0 1112223455667888986 3678889999999 999999 799999999999999
Q ss_pred HHH
Q 007178 473 VKR 475 (614)
Q Consensus 473 l~~ 475 (614)
+++
T Consensus 289 Le~ 291 (615)
T TIGR02903 289 LED 291 (615)
T ss_pred Hhh
Confidence 865
No 477
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.46 E-value=1.7e-07 Score=103.41 Aligned_cols=161 Identities=18% Similarity=0.201 Sum_probs=94.5
Q ss_pred eeeee-eEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccE-EEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHH
Q 007178 312 AVNGL-SLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGT-AYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 389 (614)
Q Consensus 312 ~l~~i-sl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~-i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e 389 (614)
-||.+ .=-+.+|+++.|.|++|+|||||+..++.......++ +++.+++...+.....+++|+..+
T Consensus 82 ~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~------------ 149 (454)
T TIGR00416 82 ELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEP------------ 149 (454)
T ss_pred HHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChH------------
Confidence 34444 2368999999999999999999999988766554444 466665432111111112332111
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCC--------
Q 007178 390 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGL-------- 461 (614)
Q Consensus 390 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgL-------- 461 (614)
++.+. . +.+- .+-...+ --.+|+++++|.=++=.
T Consensus 150 ~l~~~-------------------------~---------e~~~--~~I~~~i--~~~~~~~vVIDSIq~l~~~~~~~~~ 191 (454)
T TIGR00416 150 NLYVL-------------------------S---------ETNW--EQICANI--EEENPQACVIDSIQTLYSPDISSAP 191 (454)
T ss_pred HeEEc-------------------------C---------CCCH--HHHHHHH--HhcCCcEEEEecchhhcccccccCC
Confidence 11100 0 0000 0001111 12478999999754311
Q ss_pred -CHHHHHHHHHHHHH-hc-CCceEEEEcCCHHH--------HHhhCCEEEEEeCCEEEEEcCHHHHHHhcCC
Q 007178 462 -DPASRNNLWNVVKR-AK-QGRAIILTTHSMEE--------AEALCDRLGIFVDGSLQCIGNPKELKARYGG 522 (614)
Q Consensus 462 -D~~~~~~i~~~l~~-~~-~g~tIil~TH~~~e--------~~~l~dri~il~~G~l~~~g~~~~l~~~~~~ 522 (614)
++...+++...|.+ .+ .|.|+++++|...+ ++.++|.|+.|+.++.........+|++++.
T Consensus 192 g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~~~~~R~L~v~K~R~g~ 263 (454)
T TIGR00416 192 GSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDRDSRFRILRSVKNRFGA 263 (454)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccCCCcEEEEEEecCCCCC
Confidence 12334444444544 34 59999999997665 6778999999988765444556667888774
No 478
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.45 E-value=6.8e-07 Score=109.82 Aligned_cols=145 Identities=19% Similarity=0.262 Sum_probs=86.3
Q ss_pred eeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCC-CCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHH
Q 007178 314 NGLSLALPSGECFGMLGPNGAGKTTFISMMIGI-TRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLL 392 (614)
Q Consensus 314 ~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl-~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~ 392 (614)
.-++++.++++++||.|++|+|||||++.+.+. ....+|.+++++..+...... +-.++..-+ ....++
T Consensus 198 ~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~------~~~~~~~~~---~~~~~l- 267 (1153)
T PLN03210 198 SLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEI------YSSANPDDY---NMKLHL- 267 (1153)
T ss_pred HHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhh------ccccccccc---chhHHH-
Confidence 335677889999999999999999999999554 445689999876332211100 001111000 001111
Q ss_pred HHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHH
Q 007178 393 FYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNV 472 (614)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~ 472 (614)
.++.+.++++..++. +..+ ++.|+| |.+++-+|+||+- |. ...|+.
T Consensus 268 ------------~~~~l~~il~~~~~~--------~~~~-~~~~~~------L~~krvLLVLDdv----~~---~~~l~~ 313 (1153)
T PLN03210 268 ------------QRAFLSEILDKKDIK--------IYHL-GAMEER------LKHRKVLIFIDDL----DD---QDVLDA 313 (1153)
T ss_pred ------------HHHHHHHHhCCCCcc--------cCCH-HHHHHH------HhCCeEEEEEeCC----CC---HHHHHH
Confidence 122334444444432 2222 566666 3467778888983 32 344666
Q ss_pred HHHh----cCCceEEEEcCCHHHHHhh-CCEEEEE
Q 007178 473 VKRA----KQGRAIILTTHSMEEAEAL-CDRLGIF 502 (614)
Q Consensus 473 l~~~----~~g~tIil~TH~~~e~~~l-~dri~il 502 (614)
+... ..|.+||+|||+.+.+... +|+++-+
T Consensus 314 L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v 348 (1153)
T PLN03210 314 LAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEV 348 (1153)
T ss_pred HHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEe
Confidence 6542 3588999999999988765 6776654
No 479
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.45 E-value=1.7e-07 Score=97.29 Aligned_cols=75 Identities=12% Similarity=0.105 Sum_probs=56.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhc
Q 007178 323 GECFGMLGPNGAGKTTFISMMIGITR--TTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK 398 (614)
Q Consensus 323 Gei~~LlG~NGaGKTTll~~l~Gl~~--p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~ 398 (614)
-.++||.|||||||||+.++|.+++. |++|+|.+-+.|-.......++..|+. |.....+.+++.+.+.+...++
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHHHHHHH
Confidence 36999999999999999999999998 788998876655433223334446654 6666677788988888776654
No 480
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.43 E-value=1.2e-07 Score=92.29 Aligned_cols=65 Identities=17% Similarity=0.128 Sum_probs=46.0
Q ss_pred HHHHHHHHHcCCCCCCcccccCCCCChhHHHHHH--HHHHHhC-CCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q 007178 407 QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS--VAISLIG-NPKVVYMDEPSTGLDPASRNNLWNVVKRA 476 (614)
Q Consensus 407 ~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~--ia~al~~-~p~vllLDEPtsgLD~~~~~~i~~~l~~~ 476 (614)
.++.+.++..++.- -..-.++..+|+|++|++. ++..+-. +++++ |+|++|+...+++.+.|.++
T Consensus 125 ~~i~~~l~~~~~~~-iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~ 192 (196)
T PRK00454 125 LQMIEWLKEYGIPV-LIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKW 192 (196)
T ss_pred HHHHHHHHHcCCcE-EEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHH
Confidence 34556666666531 2445577889999999877 5555543 34443 99999999999999999874
No 481
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.41 E-value=3e-07 Score=92.60 Aligned_cols=73 Identities=21% Similarity=0.373 Sum_probs=52.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCCCCccE----EEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhh
Q 007178 322 SGECFGMLGPNGAGKTTFISMMIGITRTTSGT----AYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRL 397 (614)
Q Consensus 322 ~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~----i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~ 397 (614)
+..++||.||||||||||.+.|++++++++|. +.+++... ....+...|++++.+ ..+.+++.+...+...+
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~---~~~~~~~~g~~~~~~-~~~~~d~~~~~~~l~~l 107 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHL---DNAVLDAHGLRPRKG-APETFDVAGLAALLRRL 107 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccC---CHHHHHhcccccccC-CCCCCCHHHHHHHHHHH
Confidence 46899999999999999999999999999998 44444322 122334568887644 33567787777666555
Q ss_pred c
Q 007178 398 K 398 (614)
Q Consensus 398 ~ 398 (614)
+
T Consensus 108 ~ 108 (229)
T PRK09270 108 R 108 (229)
T ss_pred H
Confidence 4
No 482
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.35 E-value=7.7e-07 Score=87.68 Aligned_cols=28 Identities=29% Similarity=0.519 Sum_probs=26.2
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCC
Q 007178 321 PSGECFGMLGPNGAGKTTFISMMIGITR 348 (614)
Q Consensus 321 ~~Gei~~LlG~NGaGKTTll~~l~Gl~~ 348 (614)
++|++++|+||+|||||||+++|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999874
No 483
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.32 E-value=4.6e-06 Score=89.10 Aligned_cols=123 Identities=20% Similarity=0.210 Sum_probs=76.1
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhCCCC-CCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhc
Q 007178 320 LPSGECFGMLGPNGAGKTTFISMMIGITR-TTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK 398 (614)
Q Consensus 320 i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~ 398 (614)
..++.++.+.||+||||||+++.+.+.+. +..|.|...+.++... .....+.+.|
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~---~~~~~~~i~q--------------------- 174 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV---HRNKRSLINQ--------------------- 174 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh---ccCccceEEc---------------------
Confidence 45688999999999999999999988665 4466665443322100 0000000000
Q ss_pred CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC
Q 007178 399 NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ 478 (614)
Q Consensus 399 ~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~ 478 (614)
...|.. . .+ -.-+++.||-.+|+++++||+. |+.+.... ++....
T Consensus 175 ---------------~evg~~--------~--~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~---l~aa~t 219 (343)
T TIGR01420 175 ---------------REVGLD--------T--LS----FANALRAALREDPDVILIGEMR---DLETVELA---LTAAET 219 (343)
T ss_pred ---------------cccCCC--------C--cC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHH---HHHHHc
Confidence 001110 0 01 1224667888999999999997 77776543 334567
Q ss_pred CceEEEEcCCHHHHHhhCCEEEEE
Q 007178 479 GRAIILTTHSMEEAEALCDRLGIF 502 (614)
Q Consensus 479 g~tIil~TH~~~e~~~l~dri~il 502 (614)
|.+++.|.|..+... ..+|+.-|
T Consensus 220 Gh~v~~T~Ha~~~~~-~~~Rl~~~ 242 (343)
T TIGR01420 220 GHLVFGTLHTNSAAQ-TIERIIDV 242 (343)
T ss_pred CCcEEEEEcCCCHHH-HHHHHHHh
Confidence 999999999976654 45776544
No 484
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.28 E-value=7.2e-07 Score=94.04 Aligned_cols=72 Identities=15% Similarity=0.051 Sum_probs=55.9
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc-------HHHhhcceEEEcCCCCCCCCCCHHHHHH
Q 007178 321 PSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-------MDRIYTSMGVCPQEDLLWETLTGREHLL 392 (614)
Q Consensus 321 ~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~-------~~~~~~~ig~~~Q~~~l~~~lTv~e~l~ 392 (614)
++|++++++||||+||||++..|++.+.+..|+|.+.+.|.... ....+..+++++|.....+..++.+++.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~ 190 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQ 190 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHH
Confidence 57899999999999999999999999999889999988887431 1123467899998755555445556554
No 485
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.25 E-value=1.7e-06 Score=74.22 Aligned_cols=52 Identities=23% Similarity=0.507 Sum_probs=40.1
Q ss_pred ccccCCCCChhHHH-HHHHHH------HHhC------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007178 424 ADKQAGKYSGGMKR-RLSVAI------SLIG------NPKVVYMDEPSTGLDPASRNNLWNVVKR 475 (614)
Q Consensus 424 ~~~~~~~LSgG~kq-rl~ia~------al~~------~p~vllLDEPtsgLD~~~~~~i~~~l~~ 475 (614)
..+..+++|||||| .+.+|. .+-. .|++++||||+++||+..++.+.+++++
T Consensus 26 ~~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 26 TSRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EEEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred eeccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 35778999999995 333333 3334 3799999999999999999999999864
No 486
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=98.25 E-value=2.2e-06 Score=85.78 Aligned_cols=57 Identities=23% Similarity=0.231 Sum_probs=43.7
Q ss_pred CCCCEEEEeC-----CCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCC---------HHHHHhhCCEEEEEe
Q 007178 447 GNPKVVYMDE-----PSTGLDPASRNNLWNVVKRAK-QGRAIILTTHS---------MEEAEALCDRLGIFV 503 (614)
Q Consensus 447 ~~p~vllLDE-----PtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~---------~~e~~~l~dri~il~ 503 (614)
.+++.+++|= |+.+.|+..++.+.++++.++ .|.|+++++|. ++.++.+||.|++|+
T Consensus 106 ~~~~~vVIDsls~l~~~~~~~~~~r~~l~~l~~~lk~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~ 177 (224)
T TIGR03880 106 LGASRVVIDPISLLETLFDDDAERRTELFRFYSSLRETGVTTILTSEADKTNVFASKYGLIEYLADGVIILK 177 (224)
T ss_pred hCCCEEEEcChHHHhhhcCCHHHHHHHHHHHHHHHHhCCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence 4688999993 344556667788888888865 59999999995 244678899999884
No 487
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.25 E-value=3.8e-07 Score=90.34 Aligned_cols=29 Identities=31% Similarity=0.452 Sum_probs=27.2
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCCC
Q 007178 321 PSGECFGMLGPNGAGKTTFISMMIGITRT 349 (614)
Q Consensus 321 ~~Gei~~LlG~NGaGKTTll~~l~Gl~~p 349 (614)
++|+++||.||||||||||++.|+|++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57999999999999999999999999875
No 488
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.23 E-value=1.1e-06 Score=91.50 Aligned_cols=84 Identities=17% Similarity=0.213 Sum_probs=61.6
Q ss_pred eeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEE---cCeeCCCcHHHhhc-ceEEEcCCCCC---C-CC
Q 007178 313 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV---QGLDIRTDMDRIYT-SMGVCPQEDLL---W-ET 384 (614)
Q Consensus 313 l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i---~G~~i~~~~~~~~~-~ig~~~Q~~~l---~-~~ 384 (614)
++.+...+. |++++++|+||+|||||+|.|.|...++.|++.. .|...+......+. ..|++.+.|.+ . ..
T Consensus 152 i~~L~~~L~-~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~~~~~~ 230 (287)
T cd01854 152 LDELREYLK-GKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFREFGLLH 230 (287)
T ss_pred HHHHHhhhc-cceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCccCCcc
Confidence 344444554 5899999999999999999999999999999976 35444333322322 36899999877 3 46
Q ss_pred CCHHHHHHHHhhh
Q 007178 385 LTGREHLLFYGRL 397 (614)
Q Consensus 385 lTv~e~l~~~~~~ 397 (614)
++..|...++..+
T Consensus 231 ~~~~~~~~~f~~~ 243 (287)
T cd01854 231 IDPEELAHYFPEF 243 (287)
T ss_pred CCHHHHHHHhHHH
Confidence 8888888776544
No 489
>PRK08149 ATP synthase SpaL; Validated
Probab=98.23 E-value=1.7e-06 Score=94.04 Aligned_cols=175 Identities=15% Similarity=0.224 Sum_probs=102.9
Q ss_pred cceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCc---cEEEEcCeeCCCcHHH-----hhcceEEEcCCCCC
Q 007178 310 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS---GTAYVQGLDIRTDMDR-----IYTSMGVCPQEDLL 381 (614)
Q Consensus 310 ~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~s---G~i~i~G~~i~~~~~~-----~~~~ig~~~Q~~~l 381 (614)
..+++++ +++.+||+++|+|+||+|||||+++|++...++. |.|...|.++..-.++ .++++++++....-
T Consensus 139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~ 217 (428)
T PRK08149 139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDF 217 (428)
T ss_pred cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCC
Confidence 5799999 9999999999999999999999999999999987 8999999887542222 23578888765422
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCC--
Q 007178 382 WETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPST-- 459 (614)
Q Consensus 382 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPts-- 459 (614)
++.+.+.-. ..-..+.|.+..-|-. -=-...+++ |.+-|.--++ +.++||-+
T Consensus 218 ----p~~~r~~a~---------~~a~tiAE~fr~~G~~----Vll~~DslT-----r~A~A~rEi~----l~~ge~P~~~ 271 (428)
T PRK08149 218 ----SSVDRCNAA---------LVATTVAEYFRDQGKR----VVLFIDSMT-----RYARALRDVA----LAAGELPARR 271 (428)
T ss_pred ----CHHHHHhHH---------HHHHHHHHHHHHcCCC----EEEEccchH-----HHHHHHHHhH----hhcCCCCccc
Confidence 222222110 0011222333333321 001111222 1111111111 34556533
Q ss_pred CCCHHHHHHHHHHHHHh---cCC-ce----EEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCH
Q 007178 460 GLDPASRNNLWNVVKRA---KQG-RA----IILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 513 (614)
Q Consensus 460 gLD~~~~~~i~~~l~~~---~~g-~t----Iil~TH~~~e~~~l~dri~il~~G~l~~~g~~ 513 (614)
|-.|.--..+-.++.+. +.| .| |++=.-|++ +-++|.+.-+-||+++.+-..
T Consensus 272 Gyp~~vfs~l~~l~ERag~~~~GSIT~~~tVl~~~dD~~--dpi~d~~~~ilDg~ivLsr~L 331 (428)
T PRK08149 272 GYPASVFDSLPRLLERPGATLAGSITAFYTVLLESEEEP--DPIGDEIRSILDGHIYLSRKL 331 (428)
T ss_pred ccCccHHHHHHHHHHhccCCCCCCceEEEEEEecCCCCC--CCchhhhheeccEEEEEcHHH
Confidence 66666666666677654 234 23 334444544 456788777889999887544
No 490
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.19 E-value=1.5e-06 Score=94.50 Aligned_cols=64 Identities=17% Similarity=0.317 Sum_probs=56.8
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCee
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD 360 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~ 360 (614)
.++.+++++.+.. ...+++++ +.+.+||.++|+|+||+|||||+++|+|+.+|+.|.+.+.|+.
T Consensus 129 ~~~r~~v~~~l~t-----Gi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR 192 (433)
T PRK07594 129 AMVRQPITQPLMT-----GIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER 192 (433)
T ss_pred ceeccCHhheeCC-----Cceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence 5777888888853 36799999 9999999999999999999999999999999999988887764
No 491
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.19 E-value=2.1e-06 Score=83.63 Aligned_cols=70 Identities=17% Similarity=0.231 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHH--HHhhCCEEEEEeCC
Q 007178 434 GMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEE--AEALCDRLGIFVDG 505 (614)
Q Consensus 434 G~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e--~~~l~dri~il~~G 505 (614)
|+-+|..||.++..+|+.+..+| +.+||..++++++.+.+.. +|.+|++.+|.+.+ ...+||+++++..+
T Consensus 61 g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 61 GELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 78899999999999999988777 8999999999999998764 46899999999976 77889999887654
No 492
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.18 E-value=2.8e-06 Score=89.41 Aligned_cols=176 Identities=19% Similarity=0.221 Sum_probs=102.2
Q ss_pred cceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC---cHHH------hhcceEEEcCCCC
Q 007178 310 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---DMDR------IYTSMGVCPQEDL 380 (614)
Q Consensus 310 ~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~---~~~~------~~~~ig~~~Q~~~ 380 (614)
..+++++ +.+.+||.++|+|+||+|||||+++|+|...|+.|.+...|++-+. -.+. +.+.+-++.+.+
T Consensus 57 i~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d- 134 (326)
T cd01136 57 VRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSD- 134 (326)
T ss_pred cEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCC-
Confidence 6799999 9999999999999999999999999999999999988887754322 1111 122334444432
Q ss_pred CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCC--C
Q 007178 381 LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEP--S 458 (614)
Q Consensus 381 l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEP--t 458 (614)
.++.++..-.. .--.+.|.+..-|-+ .=-...+++- .|+|+- -=-+.+.|| .
T Consensus 135 ----~~~~~r~~~~~---------~a~~~AEyfr~~g~~----Vll~~Dsltr-------~a~A~r--ei~~~~ge~p~~ 188 (326)
T cd01136 135 ----ESPLLRVKAAY---------TATAIAEYFRDQGKD----VLLLMDSLTR-------FAMAQR--EIGLAAGEPPTT 188 (326)
T ss_pred ----CCHHHHHHHHH---------HHHHHHHHHHHcCCC----eEEEeccchH-------HHHHHH--HHHHhcCCCCCc
Confidence 23444443210 001122223222321 0011122221 222221 001334564 6
Q ss_pred CCCCHHHHHHHHHHHHHhc---CC-ceEEEEcC----CHHHHHhhCCEEEEEeCCEEEEEcCHHH
Q 007178 459 TGLDPASRNNLWNVVKRAK---QG-RAIILTTH----SMEEAEALCDRLGIFVDGSLQCIGNPKE 515 (614)
Q Consensus 459 sgLD~~~~~~i~~~l~~~~---~g-~tIil~TH----~~~e~~~l~dri~il~~G~l~~~g~~~~ 515 (614)
.|.+|..-..+-.++.+.. +| .|.+.+.. |++ +-++|.+.-+-||+++.+-...+
T Consensus 189 ~gyp~~~~~~~~~l~ERag~~~~GSIT~i~tv~~~gdd~~--dpi~~~~~~~~dg~ivL~r~la~ 251 (326)
T cd01136 189 KGYPPSVFALLPRLLERAGNSDKGSITAFYTVLVEGDDLN--EPIADAVRSILDGHIVLSRALAA 251 (326)
T ss_pred CCcChHHHHHhHHHHHHhcCCCCCCeeeeeeeeecCCCCC--cchHHhhhhccceEEEEcCcHHH
Confidence 7889988888888887642 34 35554332 222 34566667778899888765544
No 493
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.17 E-value=2e-06 Score=83.72 Aligned_cols=53 Identities=21% Similarity=0.325 Sum_probs=38.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc-HHHhhcceEEEcCC
Q 007178 323 GECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDRIYTSMGVCPQE 378 (614)
Q Consensus 323 Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~-~~~~~~~ig~~~Q~ 378 (614)
|++++|+|||||||||++++|++...| .+.+.+..+... ....+..+++.+|+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQE 55 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHH
Confidence 789999999999999999999999876 577777666432 12223445555554
No 494
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.16 E-value=3.3e-06 Score=90.83 Aligned_cols=42 Identities=26% Similarity=0.421 Sum_probs=34.1
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEE-EEcCee
Q 007178 319 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA-YVQGLD 360 (614)
Q Consensus 319 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i-~i~G~~ 360 (614)
-+.+|+++.|.|++|+|||||+..++.......|++ ++.+++
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE 120 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE 120 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc
Confidence 589999999999999999999999988776655555 455543
No 495
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.14 E-value=7.1e-06 Score=87.96 Aligned_cols=71 Identities=20% Similarity=0.425 Sum_probs=52.4
Q ss_pred cceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHH
Q 007178 310 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 389 (614)
Q Consensus 310 ~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e 389 (614)
..++++.++.+++|++++|+||||+||||++..|++......|. ++++++..+.. .....|
T Consensus 124 l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~----------------~~V~lit~D~~---R~ga~E 184 (374)
T PRK14722 124 LPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGA----------------SKVALLTTDSY---RIGGHE 184 (374)
T ss_pred chhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC----------------CeEEEEecccc---cccHHH
Confidence 34677788889999999999999999999999999865222221 34777776543 236778
Q ss_pred HHHHHhhhcC
Q 007178 390 HLLFYGRLKN 399 (614)
Q Consensus 390 ~l~~~~~~~~ 399 (614)
++..|+...+
T Consensus 185 qL~~~a~~~g 194 (374)
T PRK14722 185 QLRIFGKILG 194 (374)
T ss_pred HHHHHHHHcC
Confidence 8888776554
No 496
>PRK01889 GTPase RsgA; Reviewed
Probab=98.13 E-value=2.9e-06 Score=91.08 Aligned_cols=79 Identities=23% Similarity=0.383 Sum_probs=61.9
Q ss_pred eeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHH
Q 007178 312 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHL 391 (614)
Q Consensus 312 ~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~l 391 (614)
-++.+.-.+.+|++++++|+||+|||||++.|+|...|+.|+|.+++..... ...++.+++++|+..+++. .+..++
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~--tt~~~~l~~l~~~~~l~Dt-pG~~~~ 260 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH--TTTHRELHPLPSGGLLIDT-PGMREL 260 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc--hhhhccEEEecCCCeecCC-Cchhhh
Confidence 3555566678999999999999999999999999999999999998754321 1234679999998887764 555555
Q ss_pred HH
Q 007178 392 LF 393 (614)
Q Consensus 392 ~~ 393 (614)
.+
T Consensus 261 ~l 262 (356)
T PRK01889 261 QL 262 (356)
T ss_pred cc
Confidence 54
No 497
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.12 E-value=4.4e-06 Score=91.35 Aligned_cols=75 Identities=20% Similarity=0.231 Sum_probs=58.2
Q ss_pred cceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc---HHHh----hcceEEEcCCCCCC
Q 007178 310 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD---MDRI----YTSMGVCPQEDLLW 382 (614)
Q Consensus 310 ~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~---~~~~----~~~ig~~~Q~~~l~ 382 (614)
..+++++ +.+.+||.++|+|+||+|||||+++|+|..+|+.|.+...|.+-..- .+.. ....+++.++...+
T Consensus 133 ~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~ 211 (422)
T TIGR02546 133 VRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDR 211 (422)
T ss_pred ceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccC
Confidence 5699999 99999999999999999999999999999999999998866543221 1111 12356777777666
Q ss_pred CCC
Q 007178 383 ETL 385 (614)
Q Consensus 383 ~~l 385 (614)
+.+
T Consensus 212 p~~ 214 (422)
T TIGR02546 212 PSL 214 (422)
T ss_pred CHH
Confidence 654
No 498
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.11 E-value=1.4e-05 Score=92.15 Aligned_cols=70 Identities=21% Similarity=0.439 Sum_probs=51.9
Q ss_pred eeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHH
Q 007178 312 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHL 391 (614)
Q Consensus 312 ~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~l 391 (614)
++++.++.+++|++++++||||+||||++..|++.+....|. ++|+++..|.. .....|++
T Consensus 174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~----------------kkV~lit~Dt~---RigA~eQL 234 (767)
T PRK14723 174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREGA----------------DQLALLTTDSF---RIGALEQL 234 (767)
T ss_pred hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCC----------------CeEEEecCccc---chHHHHHH
Confidence 567777888889999999999999999999999987654441 23566655531 23457888
Q ss_pred HHHhhhcCC
Q 007178 392 LFYGRLKNL 400 (614)
Q Consensus 392 ~~~~~~~~~ 400 (614)
..++...+.
T Consensus 235 ~~~a~~~gv 243 (767)
T PRK14723 235 RIYGRILGV 243 (767)
T ss_pred HHHHHhCCC
Confidence 887776654
No 499
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.11 E-value=2.4e-06 Score=94.95 Aligned_cols=62 Identities=23% Similarity=0.399 Sum_probs=56.5
Q ss_pred EEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeC
Q 007178 294 SDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI 361 (614)
Q Consensus 294 ~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i 361 (614)
.+|+++.|++ +.+++++++.+..|+.++++||||+||||+++.|.|+++|.+|+..+.+..+
T Consensus 187 ~~d~~~v~Gq------~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i 248 (506)
T PRK09862 187 QHDLSDVIGQ------EQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAI 248 (506)
T ss_pred ccCeEEEECc------HHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchh
Confidence 3588888873 5699999999999999999999999999999999999999999999988665
No 500
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.09 E-value=1.2e-05 Score=72.83 Aligned_cols=54 Identities=20% Similarity=0.262 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc------CCceEEEEcCCHH
Q 007178 436 KRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK------QGRAIILTTHSME 490 (614)
Q Consensus 436 kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~------~g~tIil~TH~~~ 490 (614)
++......+...++.++++||.-.. ++.....+.+.+.... .+..+|++|++.+
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 5556666677888999999998765 6677778888887742 4778999998765
Done!