Query 007178
Match_columns 614
No_of_seqs 405 out of 3447
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 19:08:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007178.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007178hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 7.6E-56 2.6E-60 468.8 29.0 228 288-519 21-254 (366)
2 3fvq_A Fe(3+) IONS import ATP- 100.0 3.1E-55 1.1E-59 463.9 28.1 221 291-519 4-229 (359)
3 2olj_A Amino acid ABC transpor 100.0 1.7E-54 5.8E-59 442.1 31.0 222 290-519 23-249 (263)
4 1vpl_A ABC transporter, ATP-bi 100.0 1.3E-54 4.6E-59 441.3 30.0 224 289-520 13-237 (256)
5 3gfo_A Cobalt import ATP-bindi 100.0 6.7E-55 2.3E-59 447.7 26.7 223 290-519 6-234 (275)
6 3rlf_A Maltose/maltodextrin im 100.0 1.2E-54 4.2E-59 462.3 28.0 220 291-519 3-224 (381)
7 1b0u_A Histidine permease; ABC 100.0 2.7E-54 9.2E-59 440.9 29.3 222 290-519 5-243 (262)
8 3tif_A Uncharacterized ABC tra 100.0 4.4E-54 1.5E-58 432.5 26.6 223 291-517 1-233 (235)
9 2pcj_A ABC transporter, lipopr 100.0 9.3E-54 3.2E-58 427.2 28.7 214 290-512 3-222 (224)
10 1z47_A CYSA, putative ABC-tran 100.0 9.2E-54 3.2E-58 452.7 29.2 222 289-519 12-236 (355)
11 2it1_A 362AA long hypothetical 100.0 2E-53 6.9E-58 451.6 29.2 220 291-519 3-224 (362)
12 2yyz_A Sugar ABC transporter, 100.0 1.2E-53 4E-58 453.0 27.1 220 291-519 3-224 (359)
13 1g6h_A High-affinity branched- 100.0 1.1E-53 3.9E-58 435.2 25.4 218 290-515 6-239 (257)
14 1ji0_A ABC transporter; ATP bi 100.0 3.6E-53 1.2E-57 427.2 28.5 220 290-518 5-228 (240)
15 4g1u_C Hemin import ATP-bindin 100.0 5.6E-53 1.9E-57 431.9 29.5 218 290-517 10-236 (266)
16 1g29_1 MALK, maltose transport 100.0 3.7E-53 1.3E-57 451.7 28.7 221 291-519 3-230 (372)
17 1oxx_K GLCV, glucose, ABC tran 100.0 1.4E-53 4.7E-58 452.3 24.8 221 291-519 3-231 (353)
18 1v43_A Sugar-binding transport 100.0 3.9E-53 1.3E-57 451.0 26.9 220 291-519 11-232 (372)
19 3d31_A Sulfate/molybdate ABC t 100.0 5.1E-53 1.8E-57 446.5 26.5 216 291-519 1-218 (348)
20 2onk_A Molybdate/tungstate ABC 100.0 4.9E-53 1.7E-57 426.0 22.7 215 291-519 1-217 (240)
21 2yz2_A Putative ABC transporte 100.0 5.1E-52 1.7E-56 425.1 25.9 225 291-521 2-230 (266)
22 2ihy_A ABC transporter, ATP-bi 100.0 7.7E-52 2.6E-56 426.2 22.6 221 289-517 19-251 (279)
23 2zu0_C Probable ATP-dependent 100.0 9.7E-51 3.3E-55 415.7 27.2 224 289-519 18-255 (267)
24 2d2e_A SUFC protein; ABC-ATPas 100.0 7.7E-51 2.6E-55 412.7 23.8 218 291-515 3-230 (250)
25 2ixe_A Antigen peptide transpo 100.0 1.9E-50 6.6E-55 414.3 26.3 221 290-519 15-246 (271)
26 2nq2_C Hypothetical ABC transp 100.0 3E-50 1E-54 408.8 26.9 207 291-517 4-216 (253)
27 2ff7_A Alpha-hemolysin translo 100.0 1.6E-50 5.3E-55 409.6 24.5 218 290-519 6-233 (247)
28 3nh6_A ATP-binding cassette SU 100.0 5.2E-50 1.8E-54 416.8 25.7 218 290-520 52-279 (306)
29 2qi9_C Vitamin B12 import ATP- 100.0 7E-50 2.4E-54 405.0 24.9 210 290-517 3-221 (249)
30 2pjz_A Hypothetical protein ST 100.0 8.4E-50 2.9E-54 407.4 23.2 214 291-519 1-216 (263)
31 1mv5_A LMRA, multidrug resista 100.0 2.8E-50 9.5E-55 406.9 18.4 215 291-519 1-227 (243)
32 1sgw_A Putative ABC transporte 100.0 5.5E-50 1.9E-54 396.7 16.9 202 289-507 8-210 (214)
33 2ghi_A Transport protein; mult 100.0 8.7E-49 3E-53 399.7 25.1 218 290-519 16-243 (260)
34 3gd7_A Fusion complex of cysti 100.0 1E-48 3.4E-53 419.4 20.0 214 290-519 18-243 (390)
35 2pze_A Cystic fibrosis transme 100.0 4.3E-48 1.5E-52 387.4 22.7 206 289-519 4-219 (229)
36 2cbz_A Multidrug resistance-as 100.0 1.9E-47 6.4E-52 384.7 21.5 207 291-519 3-218 (237)
37 3b5x_A Lipid A export ATP-bind 100.0 4E-46 1.4E-50 421.3 25.7 219 290-519 340-568 (582)
38 4a82_A Cystic fibrosis transme 100.0 2.8E-46 9.5E-51 422.2 24.0 218 290-519 338-565 (578)
39 2yl4_A ATP-binding cassette SU 100.0 4.2E-46 1.4E-50 422.2 24.5 220 292-519 342-571 (595)
40 3b60_A Lipid A export ATP-bind 100.0 4.5E-46 1.5E-50 420.9 24.6 220 290-520 340-569 (582)
41 3qf4_A ABC transporter, ATP-bi 100.0 7.6E-46 2.6E-50 419.1 25.9 218 290-519 340-567 (587)
42 3qf4_B Uncharacterized ABC tra 100.0 4.4E-46 1.5E-50 422.0 21.1 217 290-519 353-579 (598)
43 2bbs_A Cystic fibrosis transme 100.0 1E-44 3.4E-49 374.8 20.8 199 290-518 39-247 (290)
44 4f4c_A Multidrug resistance pr 100.0 2.5E-43 8.7E-48 430.0 21.3 224 290-522 1075-1308(1321)
45 3g5u_A MCG1178, multidrug resi 100.0 9.5E-42 3.2E-46 415.2 24.6 220 290-520 386-615 (1284)
46 4f4c_A Multidrug resistance pr 100.0 1.1E-41 3.6E-46 415.7 24.3 221 290-521 414-644 (1321)
47 3g5u_A MCG1178, multidrug resi 100.0 6.8E-42 2.3E-46 416.5 22.2 222 290-520 1029-1260(1284)
48 3bk7_A ABC transporter ATP-bin 100.0 7.6E-41 2.6E-45 377.9 22.5 205 289-518 355-563 (607)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 9.4E-41 3.2E-45 373.2 20.7 205 289-518 285-493 (538)
50 3ozx_A RNAse L inhibitor; ATP 100.0 2.2E-40 7.7E-45 369.4 21.3 205 289-516 267-475 (538)
51 3bk7_A ABC transporter ATP-bin 100.0 2.5E-39 8.4E-44 365.6 14.9 198 291-505 83-304 (607)
52 3j16_B RLI1P; ribosome recycli 100.0 1E-38 3.5E-43 360.1 18.5 202 295-519 350-560 (608)
53 1yqt_A RNAse L inhibitor; ATP- 100.0 3.5E-39 1.2E-43 360.4 14.3 194 295-505 25-234 (538)
54 2iw3_A Elongation factor 3A; a 100.0 1.3E-38 4.6E-43 371.7 17.2 206 290-512 670-981 (986)
55 2iw3_A Elongation factor 3A; a 100.0 1.6E-37 5.4E-42 362.6 25.7 199 291-518 435-635 (986)
56 3ux8_A Excinuclease ABC, A sub 100.0 5.2E-38 1.8E-42 360.6 16.1 205 310-519 31-299 (670)
57 3j16_B RLI1P; ribosome recycli 100.0 9.3E-36 3.2E-40 335.9 17.4 201 291-506 69-298 (608)
58 3ux8_A Excinuclease ABC, A sub 100.0 1.7E-35 5.9E-40 339.7 19.1 201 310-519 335-641 (670)
59 3ozx_A RNAse L inhibitor; ATP 100.0 3.5E-36 1.2E-40 335.7 11.6 192 296-506 4-214 (538)
60 2vf7_A UVRA2, excinuclease ABC 100.0 1.7E-33 5.8E-38 325.9 17.4 212 289-519 500-828 (842)
61 2r6f_A Excinuclease ABC subuni 100.0 3.7E-33 1.3E-37 323.5 19.0 211 290-519 628-943 (972)
62 3pih_A Uvrabc system protein A 100.0 1.5E-32 5.1E-37 320.5 22.0 201 311-519 598-903 (916)
63 2ygr_A Uvrabc system protein A 100.0 1.8E-32 6.2E-37 318.8 18.6 211 290-519 646-961 (993)
64 2npi_A Protein CLP1; CLP1-PCF1 100.0 3.9E-36 1.3E-40 329.1 -14.9 197 289-517 116-337 (460)
65 4aby_A DNA repair protein RECN 100.0 6.8E-31 2.3E-35 284.4 17.9 197 311-510 49-380 (415)
66 3b85_A Phosphate starvation-in 100.0 4.4E-32 1.5E-36 267.3 -8.4 147 309-494 12-163 (208)
67 3qf7_A RAD50; ABC-ATPase, ATPa 100.0 1.3E-27 4.3E-32 255.1 18.9 84 425-509 274-364 (365)
68 1e69_A Chromosome segregation 99.9 2.5E-27 8.5E-32 248.6 15.7 191 315-508 17-302 (322)
69 1tq4_A IIGP1, interferon-induc 99.9 2.1E-30 7.1E-35 279.3 -12.4 174 310-505 36-254 (413)
70 4gp7_A Metallophosphoesterase; 99.9 8.2E-28 2.8E-32 229.3 4.6 146 315-494 1-164 (171)
71 1znw_A Guanylate kinase, GMP k 99.9 1.1E-30 3.7E-35 256.6 -16.3 176 309-503 8-202 (207)
72 1ye8_A Protein THEP1, hypothet 99.9 8.1E-28 2.8E-32 231.1 2.4 147 325-509 2-159 (178)
73 3b9q_A Chloroplast SRP recepto 99.9 4.9E-27 1.7E-31 244.0 0.1 175 312-507 89-284 (302)
74 2dpy_A FLII, flagellum-specifi 99.9 1.1E-27 3.7E-32 260.8 -9.4 196 290-519 130-345 (438)
75 2v9p_A Replication protein E1; 99.9 3E-29 1E-33 260.0 -21.6 166 292-520 102-268 (305)
76 2og2_A Putative signal recogni 99.9 1.8E-25 6.2E-30 236.8 2.4 173 314-507 148-341 (359)
77 2obl_A ESCN; ATPase, hydrolase 99.9 6.2E-26 2.1E-30 240.0 -5.3 196 290-518 44-255 (347)
78 1z6g_A Guanylate kinase; struc 99.9 7.1E-28 2.4E-32 238.9 -20.0 177 310-500 10-205 (218)
79 3sop_A Neuronal-specific septi 99.9 9.1E-26 3.1E-30 230.9 -7.2 149 325-491 4-152 (270)
80 2o5v_A DNA replication and rep 99.9 8.2E-23 2.8E-27 216.7 15.0 86 425-516 259-354 (359)
81 1tf7_A KAIC; homohexamer, hexa 99.9 2.5E-26 8.4E-31 256.5 -13.8 181 291-505 12-210 (525)
82 2o8b_B DNA mismatch repair pro 99.9 7.5E-24 2.6E-28 251.1 5.2 173 290-515 749-939 (1022)
83 1cr0_A DNA primase/helicase; R 99.9 1.2E-23 4E-28 217.5 5.5 183 310-507 22-237 (296)
84 3aez_A Pantothenate kinase; tr 99.9 9E-26 3.1E-30 235.6 -11.5 182 289-506 41-246 (312)
85 2pt7_A CAG-ALFA; ATPase, prote 99.9 2.4E-24 8.3E-29 226.6 -1.6 148 312-523 160-309 (330)
86 2jeo_A Uridine-cytidine kinase 99.9 8.9E-24 3E-28 212.8 1.1 176 309-520 11-189 (245)
87 3pih_A Uvrabc system protein A 99.9 1.8E-22 6.1E-27 235.8 10.9 161 337-519 382-561 (916)
88 3qkt_A DNA double-strand break 99.9 1.9E-21 6.6E-26 205.2 17.0 80 423-503 241-327 (339)
89 4ad8_A DNA repair protein RECN 99.9 9.8E-22 3.4E-26 218.9 13.9 80 426-506 392-474 (517)
90 2ehv_A Hypothetical protein PH 99.9 2.4E-23 8.3E-28 208.4 0.5 164 319-504 26-207 (251)
91 1tf7_A KAIC; homohexamer, hexa 99.8 1.2E-21 4.1E-26 218.6 7.9 154 317-506 275-444 (525)
92 2r6f_A Excinuclease ABC subuni 99.8 5.9E-21 2E-25 221.7 12.2 131 384-518 451-600 (972)
93 3thx_A DNA mismatch repair pro 99.8 6.6E-22 2.3E-26 231.9 3.3 168 291-516 631-811 (934)
94 2vf7_A UVRA2, excinuclease ABC 99.8 2.8E-20 9.7E-25 215.6 11.5 180 331-518 270-475 (842)
95 2eyu_A Twitching motility prot 99.8 1.9E-21 6.4E-26 197.9 1.1 132 311-504 15-147 (261)
96 2ygr_A Uvrabc system protein A 99.8 7.6E-20 2.6E-24 213.1 12.7 133 382-518 466-617 (993)
97 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 1.2E-19 4.2E-24 168.8 11.4 83 424-507 51-142 (148)
98 2qnr_A Septin-2, protein NEDD5 99.8 3.9E-22 1.3E-26 207.2 -6.2 163 295-490 2-168 (301)
99 1ewq_A DNA mismatch repair pro 99.8 9.4E-21 3.2E-25 218.4 3.8 146 310-512 566-718 (765)
100 1w1w_A Structural maintenance 99.8 8E-19 2.7E-23 191.0 17.7 77 426-503 329-410 (430)
101 3thx_B DNA mismatch repair pro 99.8 1.2E-20 3.9E-25 220.8 2.2 154 309-509 659-816 (918)
102 3szr_A Interferon-induced GTP- 99.8 3.5E-22 1.2E-26 226.3 -10.5 190 291-516 10-235 (608)
103 4a74_A DNA repair and recombin 99.8 4.2E-21 1.4E-25 189.6 -1.5 148 319-506 21-201 (231)
104 3asz_A Uridine kinase; cytidin 99.8 4.4E-22 1.5E-26 195.0 -11.5 145 320-490 3-162 (211)
105 1s96_A Guanylate kinase, GMP k 99.8 1E-20 3.4E-25 187.6 -4.5 146 318-520 11-162 (219)
106 2w0m_A SSO2452; RECA, SSPF, un 99.8 1.5E-19 5.2E-24 178.2 4.0 169 310-506 9-193 (235)
107 1rj9_A FTSY, signal recognitio 99.8 2E-20 6.8E-25 194.4 -2.5 149 322-489 101-258 (304)
108 2i3b_A HCR-ntpase, human cance 99.8 3E-21 1E-25 187.0 -8.2 159 323-511 1-169 (189)
109 1wb9_A DNA mismatch repair pro 99.8 1.2E-19 4.2E-24 210.2 3.4 154 310-512 595-752 (800)
110 1pui_A ENGB, probable GTP-bind 99.7 2.9E-20 1E-24 181.0 -6.1 174 291-481 3-202 (210)
111 2bdt_A BH3686; alpha-beta prot 99.7 1.7E-22 5.9E-27 194.6 -22.0 173 323-518 2-184 (189)
112 1pzn_A RAD51, DNA repair and r 99.7 1.6E-19 5.3E-24 191.3 -2.2 163 311-512 118-309 (349)
113 2qag_C Septin-7; cell cycle, c 99.7 1.2E-19 4.1E-24 196.0 -3.1 165 290-490 10-178 (418)
114 3jvv_A Twitching mobility prot 99.7 2.2E-18 7.6E-23 182.6 2.3 136 310-505 103-246 (356)
115 1nlf_A Regulatory protein REPA 99.7 1.3E-17 4.6E-22 170.7 7.2 153 319-493 26-185 (279)
116 1lw7_A Transcriptional regulat 99.7 9E-22 3.1E-26 209.8 -26.1 177 312-518 157-355 (365)
117 3kta_B Chromosome segregation 99.7 6.8E-16 2.3E-20 147.1 13.0 83 423-506 57-145 (173)
118 1zp6_A Hypothetical protein AT 99.7 1.2E-19 4.3E-24 174.4 -13.1 162 319-499 5-169 (191)
119 1nij_A Hypothetical protein YJ 99.6 1.1E-19 3.6E-24 190.3 -17.1 160 324-497 5-197 (318)
120 2qm8_A GTPase/ATPase; G protei 99.6 1.1E-19 3.7E-24 191.7 -17.2 173 291-476 29-258 (337)
121 1n0w_A DNA repair protein RAD5 99.6 7.7E-17 2.6E-21 160.3 3.7 146 319-506 20-210 (243)
122 2cvh_A DNA repair and recombin 99.6 1.5E-16 5.2E-21 155.7 5.7 154 310-506 6-186 (220)
123 1htw_A HI0065; nucleotide-bind 99.6 1.7E-18 6E-23 162.8 -8.4 90 294-395 10-99 (158)
124 2bbw_A Adenylate kinase 4, AK4 99.6 2.5E-18 8.6E-23 172.8 -8.0 142 322-477 26-197 (246)
125 2ewv_A Twitching motility prot 99.6 9.1E-17 3.1E-21 171.5 3.2 130 312-503 127-257 (372)
126 2qag_B Septin-6, protein NEDD5 99.6 1.8E-17 6.3E-22 178.5 -3.6 180 291-489 16-219 (427)
127 2yhs_A FTSY, cell division pro 99.6 6.5E-18 2.2E-22 184.3 -7.5 158 313-492 283-451 (503)
128 2rcn_A Probable GTPase ENGC; Y 99.6 4.8E-16 1.6E-20 164.2 6.0 122 312-445 205-328 (358)
129 2gza_A Type IV secretion syste 99.6 3E-16 1E-20 166.8 0.7 137 313-506 165-303 (361)
130 3e70_C DPA, signal recognition 99.6 1E-15 3.4E-20 160.5 3.9 145 319-488 125-278 (328)
131 2oap_1 GSPE-2, type II secreti 99.6 5.7E-18 1.9E-22 187.6 -13.9 174 309-497 246-458 (511)
132 2yv5_A YJEQ protein; hydrolase 99.6 1E-16 3.5E-21 166.4 -3.9 122 319-443 161-300 (302)
133 3auy_A DNA double-strand break 99.5 4E-14 1.4E-18 150.9 12.3 77 426-503 276-359 (371)
134 1ni3_A YCHF GTPase, YCHF GTP-b 99.5 1.7E-17 5.7E-22 177.6 -14.6 168 319-513 16-208 (392)
135 3ec2_A DNA replication protein 99.5 4.6E-15 1.6E-19 141.5 2.5 111 318-491 33-145 (180)
136 1sxj_E Activator 1 40 kDa subu 99.5 3.2E-14 1.1E-18 149.7 7.7 136 326-491 39-176 (354)
137 1in4_A RUVB, holliday junction 99.5 2.5E-17 8.5E-22 173.3 -16.9 175 292-498 19-211 (334)
138 1p9r_A General secretion pathw 99.5 7.4E-17 2.5E-21 174.3 -14.6 147 292-453 144-314 (418)
139 2kjq_A DNAA-related protein; s 99.5 1.8E-14 6.1E-19 133.9 3.5 92 311-488 29-124 (149)
140 2f1r_A Molybdopterin-guanine d 99.4 6.4E-16 2.2E-20 147.1 -9.2 136 324-479 3-163 (171)
141 1u0l_A Probable GTPase ENGC; p 99.4 3.7E-15 1.3E-19 154.5 -5.4 111 318-433 164-294 (301)
142 1sq5_A Pantothenate kinase; P- 99.4 1.1E-15 3.7E-20 159.1 -9.4 140 290-463 36-199 (308)
143 1odf_A YGR205W, hypothetical 3 99.4 1.2E-14 4.3E-19 149.7 -3.1 126 321-464 29-168 (290)
144 3lda_A DNA repair protein RAD5 99.4 9.4E-14 3.2E-18 149.2 3.1 147 318-506 173-364 (400)
145 1udx_A The GTP-binding protein 99.4 3.5E-14 1.2E-18 153.2 -0.8 166 313-499 147-319 (416)
146 1t9h_A YLOQ, probable GTPase E 99.4 2.1E-14 7.2E-19 148.9 -3.9 118 318-438 168-303 (307)
147 2x8a_A Nuclear valosin-contain 99.3 5E-16 1.7E-20 159.0 -18.2 145 310-474 33-191 (274)
148 1lvg_A Guanylate kinase, GMP k 99.3 3.3E-16 1.1E-20 152.4 -20.2 153 321-504 2-173 (198)
149 3tr0_A Guanylate kinase, GMP k 99.3 3.8E-13 1.3E-17 130.2 -0.0 126 317-457 1-127 (205)
150 2px0_A Flagellar biosynthesis 99.3 9.9E-12 3.4E-16 128.4 9.4 139 321-509 103-246 (296)
151 3lnc_A Guanylate kinase, GMP k 99.2 4.9E-16 1.7E-20 154.4 -23.2 178 310-500 14-206 (231)
152 2dr3_A UPF0273 protein PH0284; 99.2 1E-12 3.4E-17 130.6 0.3 173 310-505 9-197 (247)
153 3c8u_A Fructokinase; YP_612366 99.2 3.5E-14 1.2E-18 138.8 -10.3 156 320-520 19-183 (208)
154 1ls1_A Signal recognition part 99.2 5.5E-11 1.9E-15 122.7 11.9 138 294-484 79-217 (295)
155 1vma_A Cell division protein F 99.2 1.1E-11 3.9E-16 128.4 5.8 111 316-475 97-210 (306)
156 3euj_A Chromosome partition pr 99.1 1.7E-11 5.9E-16 134.1 3.5 52 310-362 17-68 (483)
157 2r6a_A DNAB helicase, replicat 99.0 1.6E-10 5.5E-15 126.4 5.9 176 310-508 190-402 (454)
158 2ius_A DNA translocase FTSK; n 99.0 9.2E-12 3.1E-16 137.2 -4.4 174 315-502 159-362 (512)
159 2zr9_A Protein RECA, recombina 99.0 5.8E-10 2E-14 117.8 8.6 144 319-512 57-237 (349)
160 1qhl_A Protein (cell division 99.0 1.9E-11 6.5E-16 121.3 -4.1 74 291-378 9-91 (227)
161 3k1j_A LON protease, ATP-depen 99.0 1.5E-11 5.2E-16 139.2 -5.7 156 310-475 47-227 (604)
162 1iy2_A ATP-dependent metallopr 98.9 6.8E-13 2.3E-17 135.4 -15.4 132 295-451 53-190 (278)
163 1oix_A RAS-related protein RAB 98.9 3.5E-11 1.2E-15 115.5 -3.0 134 325-475 31-188 (191)
164 1ixz_A ATP-dependent metallopr 98.9 7.6E-13 2.6E-17 133.0 -15.9 128 310-458 38-171 (254)
165 1svm_A Large T antigen; AAA+ f 98.8 2.4E-11 8.3E-16 129.4 -10.8 138 310-459 156-312 (377)
166 4eun_A Thermoresistant glucoki 98.7 6.8E-10 2.3E-14 107.5 -1.3 75 312-390 18-92 (200)
167 2f9l_A RAB11B, member RAS onco 98.7 2.7E-10 9.1E-15 109.7 -4.4 35 439-475 130-164 (199)
168 2qtf_A Protein HFLX, GTP-bindi 98.7 2.2E-09 7.5E-14 114.0 -0.3 136 325-475 181-350 (364)
169 1jjv_A Dephospho-COA kinase; P 98.6 4.7E-09 1.6E-13 101.7 0.5 137 325-521 4-142 (206)
170 3cr8_A Sulfate adenylyltranfer 98.6 2.3E-09 8E-14 119.5 -3.5 91 319-417 365-468 (552)
171 1zu4_A FTSY; GTPase, signal re 98.5 1.8E-08 6.1E-13 105.0 2.5 79 313-391 95-184 (320)
172 4e22_A Cytidylate kinase; P-lo 98.5 1E-08 3.5E-13 103.1 0.4 65 312-379 19-96 (252)
173 2xau_A PRE-mRNA-splicing facto 98.5 7.7E-08 2.7E-12 111.7 7.3 74 425-498 185-261 (773)
174 3hr8_A Protein RECA; alpha and 98.5 1.4E-07 4.7E-12 99.6 7.6 71 319-391 57-128 (356)
175 2e87_A Hypothetical protein PH 98.5 1.1E-07 3.7E-12 100.5 6.1 126 323-492 167-295 (357)
176 2j41_A Guanylate kinase; GMP, 98.5 4.9E-08 1.7E-12 94.0 3.1 35 318-352 1-35 (207)
177 3uie_A Adenylyl-sulfate kinase 98.5 3.9E-09 1.3E-13 102.1 -4.8 61 295-362 3-65 (200)
178 3kta_A Chromosome segregation 98.5 5.6E-08 1.9E-12 92.0 3.3 134 314-474 18-167 (182)
179 3a00_A Guanylate kinase, GMP k 98.5 4E-08 1.4E-12 93.9 1.9 32 323-354 1-32 (186)
180 2ce7_A Cell division protein F 98.4 1.5E-07 5.3E-12 103.0 6.0 61 433-493 93-168 (476)
181 2dhr_A FTSH; AAA+ protein, hex 98.4 3.4E-09 1.2E-13 116.7 -7.7 141 310-471 53-211 (499)
182 2dy1_A Elongation factor G; tr 98.4 1.1E-07 3.6E-12 108.8 4.2 133 317-492 3-139 (665)
183 3nwj_A ATSK2; P loop, shikimat 98.4 2.3E-08 7.9E-13 100.6 -1.3 53 290-347 16-72 (250)
184 2www_A Methylmalonic aciduria 98.4 3.1E-08 1E-12 104.6 -0.5 42 321-362 72-113 (349)
185 3t34_A Dynamin-related protein 98.3 7.3E-09 2.5E-13 109.6 -6.7 173 310-487 24-212 (360)
186 1knq_A Gluconate kinase; ALFA/ 98.3 4.6E-08 1.6E-12 92.0 -2.4 39 321-363 6-44 (175)
187 3kl4_A SRP54, signal recogniti 98.2 2.6E-06 8.9E-11 92.0 10.3 125 322-489 96-224 (433)
188 1fnn_A CDC6P, cell division co 98.2 3.1E-06 1.1E-10 89.2 9.7 50 446-496 123-176 (389)
189 1kgd_A CASK, peripheral plasma 98.1 9.6E-07 3.3E-11 83.8 2.1 36 321-356 3-39 (180)
190 2vp4_A Deoxynucleoside kinase; 98.0 1.3E-06 4.5E-11 86.2 2.6 40 318-361 15-54 (230)
191 1rz3_A Hypothetical protein rb 98.0 9.1E-07 3.1E-11 85.5 1.0 44 319-362 18-61 (201)
192 1ega_A Protein (GTP-binding pr 98.0 2.8E-07 9.6E-12 95.1 -3.2 153 322-499 7-169 (301)
193 4a1f_A DNAB helicase, replicat 98.0 5.3E-06 1.8E-10 86.8 6.3 128 310-486 33-163 (338)
194 1sxj_C Activator 1 40 kDa subu 98.0 3.1E-08 1.1E-12 103.7 -11.0 49 310-358 31-81 (340)
195 3vaa_A Shikimate kinase, SK; s 98.0 2.4E-06 8.3E-11 82.2 3.3 39 309-347 11-49 (199)
196 3tqc_A Pantothenate kinase; bi 98.0 6.7E-07 2.3E-11 93.1 -1.2 55 296-356 65-127 (321)
197 3tau_A Guanylate kinase, GMP k 97.9 4.7E-06 1.6E-10 80.9 3.5 29 321-349 6-34 (208)
198 3ney_A 55 kDa erythrocyte memb 97.9 4.1E-06 1.4E-10 81.0 3.0 32 317-348 13-44 (197)
199 2qby_A CDC6 homolog 1, cell di 97.9 4.8E-06 1.6E-10 87.3 3.5 30 321-350 43-72 (386)
200 1cke_A CK, MSSA, protein (cyti 97.9 9E-07 3.1E-11 86.5 -2.0 57 323-379 5-74 (227)
201 2p67_A LAO/AO transport system 97.8 1.7E-06 5.7E-11 90.9 -1.0 65 292-362 31-95 (341)
202 2qt1_A Nicotinamide riboside k 97.8 1.3E-05 4.4E-10 77.4 4.1 33 316-348 14-46 (207)
203 2z4s_A Chromosomal replication 97.7 4.9E-06 1.7E-10 90.3 0.2 42 447-488 193-236 (440)
204 3m6a_A ATP-dependent protease 97.7 4.2E-06 1.4E-10 93.3 -0.7 59 295-360 87-145 (543)
205 2z43_A DNA repair and recombin 97.7 2.7E-05 9.2E-10 80.9 5.4 28 319-346 103-130 (324)
206 2ffh_A Protein (FFH); SRP54, s 97.7 0.00031 1.1E-08 75.6 13.4 59 295-363 80-138 (425)
207 3b9p_A CG5977-PA, isoform A; A 97.7 0.00012 4.2E-09 74.4 9.6 59 432-490 97-170 (297)
208 1j8m_F SRP54, signal recogniti 97.6 0.00022 7.7E-09 73.2 11.1 60 295-363 78-138 (297)
209 1v5w_A DMC1, meiotic recombina 97.6 4.7E-05 1.6E-09 79.8 5.8 28 319-346 118-145 (343)
210 3lxx_A GTPase IMAP family memb 97.6 0.00024 8.4E-09 69.9 10.7 41 447-487 111-154 (239)
211 1kag_A SKI, shikimate kinase I 97.5 3E-05 1E-09 72.2 2.5 33 322-358 3-35 (173)
212 1mky_A Probable GTP-binding pr 97.5 4.5E-05 1.5E-09 82.7 4.1 145 324-475 181-351 (439)
213 1f2t_A RAD50 ABC-ATPase; DNA d 97.5 5.4E-05 1.9E-09 69.6 3.8 30 315-345 16-45 (149)
214 2pez_A Bifunctional 3'-phospho 97.5 2.2E-05 7.4E-10 73.9 1.0 40 321-361 3-44 (179)
215 1ypw_A Transitional endoplasmi 97.4 7.6E-05 2.6E-09 87.0 4.5 32 318-349 233-264 (806)
216 3cf0_A Transitional endoplasmi 97.4 0.00034 1.2E-08 71.7 8.5 30 318-347 44-73 (301)
217 4fcw_A Chaperone protein CLPB; 97.4 0.00018 6.2E-09 73.4 6.2 31 324-354 48-78 (311)
218 4eaq_A DTMP kinase, thymidylat 97.3 7.1E-05 2.4E-09 73.9 2.5 46 311-357 11-59 (229)
219 1u94_A RECA protein, recombina 97.3 0.0007 2.4E-08 71.3 10.2 36 311-346 49-86 (356)
220 3k53_A Ferrous iron transport 97.3 2.4E-05 8.1E-10 79.1 -1.5 45 457-501 144-190 (271)
221 1m7g_A Adenylylsulfate kinase; 97.3 3.9E-05 1.3E-09 74.3 -0.1 43 318-360 20-64 (211)
222 1sxj_D Activator 1 41 kDa subu 97.2 4.5E-06 1.5E-10 86.9 -7.6 43 447-490 132-174 (353)
223 3ice_A Transcription terminati 97.2 4.4E-05 1.5E-09 80.7 -0.1 52 291-347 133-198 (422)
224 1f6b_A SAR1; gtpases, N-termin 97.2 7.5E-05 2.6E-09 71.4 1.3 35 310-345 13-47 (198)
225 3bh0_A DNAB-like replicative h 97.2 0.00017 5.7E-09 74.7 4.0 131 310-487 55-189 (315)
226 1m2o_B GTP-binding protein SAR 97.2 0.00021 7.2E-09 67.6 4.2 34 311-345 12-45 (190)
227 3llm_A ATP-dependent RNA helic 97.2 0.00014 4.8E-09 71.6 3.0 147 319-495 72-226 (235)
228 2qag_A Septin-2, protein NEDD5 97.1 4.9E-05 1.7E-09 80.3 -1.2 56 291-358 17-72 (361)
229 2gj8_A MNME, tRNA modification 97.1 0.00032 1.1E-08 65.3 4.5 27 321-347 2-28 (172)
230 1njg_A DNA polymerase III subu 97.1 0.00032 1.1E-08 67.6 4.6 43 447-490 125-167 (250)
231 3qks_A DNA double-strand break 97.1 0.00025 8.5E-09 68.6 3.7 29 315-344 16-44 (203)
232 2q6t_A DNAB replication FORK h 97.0 0.00061 2.1E-08 73.8 6.4 172 310-504 187-397 (444)
233 2yvu_A Probable adenylyl-sulfa 97.0 0.00018 6E-09 68.0 1.6 37 319-355 9-45 (186)
234 3t61_A Gluconokinase; PSI-biol 97.0 0.00012 4E-09 70.2 -0.2 35 323-361 18-52 (202)
235 2ohf_A Protein OLA1, GTP-bindi 96.9 0.00038 1.3E-08 74.1 3.7 41 319-359 18-69 (396)
236 2wji_A Ferrous iron transport 96.9 0.00076 2.6E-08 62.0 5.3 25 325-349 5-29 (165)
237 2wjg_A FEOB, ferrous iron tran 96.9 0.0005 1.7E-08 64.2 3.9 22 325-346 9-30 (188)
238 2w58_A DNAI, primosome compone 96.9 0.0011 3.6E-08 63.3 5.8 26 324-349 55-80 (202)
239 2v1u_A Cell division control p 96.8 0.001 3.5E-08 69.4 6.0 28 321-348 42-69 (387)
240 3auy_A DNA double-strand break 96.8 0.0011 3.6E-08 70.2 6.1 32 312-344 15-46 (371)
241 1l8q_A Chromosomal replication 96.8 0.0007 2.4E-08 69.8 4.4 41 447-487 97-139 (324)
242 2if2_A Dephospho-COA kinase; a 96.7 0.00057 1.9E-08 65.3 2.7 21 325-345 3-23 (204)
243 3bos_A Putative DNA replicatio 96.7 0.00089 3E-08 64.9 4.0 27 322-348 51-77 (242)
244 1y63_A LMAJ004144AAA protein; 96.7 0.00077 2.6E-08 63.7 3.3 32 315-346 2-33 (184)
245 3dm5_A SRP54, signal recogniti 96.6 0.021 7.2E-07 61.6 14.1 34 322-355 99-132 (443)
246 2qor_A Guanylate kinase; phosp 96.6 0.00091 3.1E-08 64.2 3.0 30 319-348 8-37 (204)
247 1np6_A Molybdopterin-guanine d 96.5 0.00086 2.9E-08 63.3 2.4 38 323-360 6-46 (174)
248 3h4m_A Proteasome-activating n 96.5 0.0043 1.5E-07 62.3 7.7 28 320-347 48-75 (285)
249 2zej_A Dardarin, leucine-rich 96.5 0.0013 4.3E-08 61.7 3.3 26 325-350 4-29 (184)
250 2ga8_A Hypothetical 39.9 kDa p 96.5 0.00035 1.2E-08 73.2 -0.6 38 311-348 10-49 (359)
251 1q3t_A Cytidylate kinase; nucl 96.4 0.00072 2.5E-08 66.5 1.2 27 320-346 13-39 (236)
252 3cm0_A Adenylate kinase; ATP-b 96.4 0.00076 2.6E-08 63.3 1.2 25 321-345 2-26 (186)
253 2p5t_B PEZT; postsegregational 96.3 0.0012 4E-08 65.9 2.1 41 319-361 28-68 (253)
254 3n70_A Transport activator; si 96.3 0.0099 3.4E-07 53.7 8.0 44 448-492 76-120 (145)
255 1lv7_A FTSH; alpha/beta domain 96.2 0.0018 6E-08 64.3 2.8 45 312-360 36-80 (257)
256 1xp8_A RECA protein, recombina 96.2 0.016 5.5E-07 61.1 10.2 27 319-345 70-96 (366)
257 1jal_A YCHF protein; nucleotid 96.0 0.0042 1.4E-07 65.4 4.5 36 323-358 2-48 (363)
258 2b8t_A Thymidine kinase; deoxy 95.9 0.0098 3.3E-07 58.3 6.5 52 447-503 88-150 (223)
259 2r8r_A Sensor protein; KDPD, P 95.9 0.0003 1E-08 69.1 -4.3 43 445-487 81-125 (228)
260 4ag6_A VIRB4 ATPase, type IV s 95.9 0.0025 8.4E-08 67.7 2.2 47 447-493 261-311 (392)
261 3r20_A Cytidylate kinase; stru 95.9 0.0018 6.1E-08 64.0 0.9 25 322-346 8-32 (233)
262 3d8b_A Fidgetin-like protein 1 95.8 0.02 6.9E-07 59.9 8.8 26 322-347 116-141 (357)
263 3ihw_A Centg3; RAS, centaurin, 95.8 0.0083 2.8E-07 56.2 5.1 28 325-352 22-54 (184)
264 2chg_A Replication factor C sm 95.8 0.033 1.1E-06 52.5 9.3 42 447-489 101-142 (226)
265 1fzq_A ADP-ribosylation factor 95.8 0.0049 1.7E-07 57.4 3.4 22 325-346 18-39 (181)
266 3kb2_A SPBC2 prophage-derived 95.7 0.0049 1.7E-07 56.6 3.2 23 325-347 3-25 (173)
267 3zvl_A Bifunctional polynucleo 95.7 0.041 1.4E-06 58.9 11.0 28 319-346 254-281 (416)
268 2qz4_A Paraplegin; AAA+, SPG7, 95.7 0.03 1E-06 55.0 9.2 27 321-347 37-63 (262)
269 3io5_A Recombination and repai 95.6 0.024 8.3E-07 58.4 8.2 28 319-347 25-53 (333)
270 1qhx_A CPT, protein (chloramph 95.6 0.0071 2.4E-07 56.1 3.6 26 323-348 3-28 (178)
271 1kht_A Adenylate kinase; phosp 95.5 0.0073 2.5E-07 56.4 3.5 25 323-347 3-27 (192)
272 1q57_A DNA primase/helicase; d 95.5 0.13 4.6E-06 56.1 14.2 35 311-345 230-264 (503)
273 3cmw_A Protein RECA, recombina 95.5 0.03 1E-06 69.5 9.7 36 319-354 728-763 (1706)
274 1vht_A Dephospho-COA kinase; s 95.5 0.0077 2.6E-07 58.1 3.6 24 322-345 3-26 (218)
275 4dcu_A GTP-binding protein ENG 95.4 0.011 3.8E-07 64.0 5.1 56 434-492 88-144 (456)
276 2rhm_A Putative kinase; P-loop 95.4 0.007 2.4E-07 56.7 3.1 26 321-346 3-28 (193)
277 3lw7_A Adenylate kinase relate 95.4 0.0079 2.7E-07 54.9 3.2 19 325-343 3-21 (179)
278 2ze6_A Isopentenyl transferase 95.4 0.007 2.4E-07 60.3 2.9 24 324-347 2-25 (253)
279 1uf9_A TT1252 protein; P-loop, 95.3 0.0074 2.5E-07 57.0 3.0 32 323-359 8-39 (203)
280 3syl_A Protein CBBX; photosynt 95.3 0.08 2.7E-06 53.4 10.9 26 322-347 66-91 (309)
281 1gvn_B Zeta; postsegregational 95.3 0.0086 3E-07 60.9 3.5 36 321-358 31-66 (287)
282 1gtv_A TMK, thymidylate kinase 95.3 0.0024 8.1E-08 61.2 -0.7 30 325-354 2-31 (214)
283 2jaq_A Deoxyguanosine kinase; 95.2 0.01 3.5E-07 56.0 3.3 23 325-347 2-24 (205)
284 1via_A Shikimate kinase; struc 95.1 0.0088 3E-07 55.5 2.7 23 325-347 6-28 (175)
285 3iij_A Coilin-interacting nucl 95.1 0.0071 2.4E-07 56.3 2.0 25 321-345 9-33 (180)
286 2v54_A DTMP kinase, thymidylat 95.1 0.012 4.2E-07 55.6 3.6 26 322-347 3-28 (204)
287 1ex7_A Guanylate kinase; subst 95.0 0.011 3.6E-07 56.3 3.1 22 326-347 4-25 (186)
288 3trf_A Shikimate kinase, SK; a 95.0 0.012 4.2E-07 54.8 3.4 26 322-347 4-29 (185)
289 1ly1_A Polynucleotide kinase; 95.0 0.013 4.4E-07 54.1 3.3 22 324-345 3-24 (181)
290 1xjc_A MOBB protein homolog; s 95.0 0.0077 2.6E-07 56.4 1.8 26 324-349 5-30 (169)
291 2plr_A DTMP kinase, probable t 94.9 0.014 4.7E-07 55.4 3.6 28 322-349 3-30 (213)
292 1tev_A UMP-CMP kinase; ploop, 94.9 0.014 5E-07 54.4 3.4 24 322-345 2-25 (196)
293 2c95_A Adenylate kinase 1; tra 94.8 0.013 4.6E-07 54.9 3.1 26 321-346 7-32 (196)
294 2vhj_A Ntpase P4, P4; non- hyd 94.8 0.032 1.1E-06 57.6 6.0 33 313-345 113-145 (331)
295 2wwf_A Thymidilate kinase, put 94.8 0.015 5.1E-07 55.4 3.3 26 321-346 8-33 (212)
296 3b1v_A Ferrous iron uptake tra 94.8 0.019 6.5E-07 57.9 4.2 23 325-347 5-27 (272)
297 3cmu_A Protein RECA, recombina 94.7 0.076 2.6E-06 66.8 10.2 37 311-347 369-407 (2050)
298 2erx_A GTP-binding protein DI- 94.7 0.025 8.6E-07 51.1 4.6 22 325-346 5-26 (172)
299 1nn5_A Similar to deoxythymidy 94.7 0.017 5.7E-07 55.1 3.3 27 320-346 6-32 (215)
300 1jr3_A DNA polymerase III subu 94.6 0.044 1.5E-06 56.8 6.7 43 447-490 118-160 (373)
301 1z0j_A RAB-22, RAS-related pro 94.6 0.02 7E-07 51.7 3.6 23 325-347 8-30 (170)
302 2vli_A Antibiotic resistance p 94.6 0.014 4.8E-07 54.2 2.5 26 322-347 4-29 (183)
303 2ged_A SR-beta, signal recogni 94.6 0.015 5E-07 54.3 2.7 25 324-348 49-73 (193)
304 3ake_A Cytidylate kinase; CMP 94.5 0.016 5.5E-07 54.9 2.9 23 325-347 4-26 (208)
305 1qvr_A CLPB protein; coiled co 94.5 0.038 1.3E-06 64.7 6.6 35 324-358 589-624 (854)
306 3cbq_A GTP-binding protein REM 94.5 0.017 5.7E-07 54.6 3.0 22 325-346 25-46 (195)
307 2dby_A GTP-binding protein; GD 94.5 0.016 5.3E-07 61.2 2.9 21 326-346 4-24 (368)
308 3iby_A Ferrous iron transport 94.5 0.019 6.5E-07 57.3 3.4 23 325-347 3-25 (256)
309 3q72_A GTP-binding protein RAD 94.5 0.016 5.6E-07 52.3 2.7 24 325-348 4-27 (166)
310 3co5_A Putative two-component 94.5 0.044 1.5E-06 49.2 5.5 38 449-487 76-114 (143)
311 2nzj_A GTP-binding protein REM 94.4 0.02 6.9E-07 52.1 3.2 23 325-347 6-28 (175)
312 2z0h_A DTMP kinase, thymidylat 94.3 0.021 7.3E-07 53.5 3.2 23 325-347 2-24 (197)
313 1xwi_A SKD1 protein; VPS4B, AA 94.3 0.22 7.4E-06 51.2 11.1 26 322-347 44-69 (322)
314 1ko7_A HPR kinase/phosphatase; 94.3 0.033 1.1E-06 57.3 4.8 35 310-345 132-166 (314)
315 1nks_A Adenylate kinase; therm 94.3 0.021 7.1E-07 53.2 3.0 23 325-347 3-25 (194)
316 3tw8_B RAS-related protein RAB 94.3 0.021 7.3E-07 52.2 3.0 23 325-347 11-33 (181)
317 1z2a_A RAS-related protein RAB 94.2 0.02 6.7E-07 51.7 2.7 22 325-346 7-28 (168)
318 1moz_A ARL1, ADP-ribosylation 94.2 0.014 4.8E-07 53.8 1.7 23 323-345 18-40 (183)
319 3q85_A GTP-binding protein REM 94.2 0.023 7.8E-07 51.5 3.1 22 326-347 5-26 (169)
320 1aky_A Adenylate kinase; ATP:A 94.2 0.026 9E-07 54.3 3.6 26 322-347 3-28 (220)
321 2dyk_A GTP-binding protein; GT 94.2 0.021 7.1E-07 51.2 2.7 23 325-347 3-25 (161)
322 2lkc_A Translation initiation 94.2 0.029 1E-06 51.2 3.8 26 322-347 7-32 (178)
323 3lxw_A GTPase IMAP family memb 94.2 0.022 7.7E-07 56.3 3.1 56 435-491 89-151 (247)
324 1kao_A RAP2A; GTP-binding prot 94.2 0.021 7.2E-07 51.2 2.7 22 325-346 5-26 (167)
325 2ce2_X GTPase HRAS; signaling 94.2 0.019 6.5E-07 51.4 2.4 22 325-346 5-26 (166)
326 1u8z_A RAS-related protein RAL 94.1 0.022 7.4E-07 51.2 2.7 22 325-346 6-27 (168)
327 2bwj_A Adenylate kinase 5; pho 94.1 0.025 8.5E-07 53.1 3.2 28 320-347 9-36 (199)
328 1zd8_A GTP:AMP phosphotransfer 94.1 0.025 8.7E-07 54.8 3.2 26 321-346 5-30 (227)
329 1svi_A GTP-binding protein YSX 94.0 0.022 7.5E-07 53.1 2.6 23 324-346 24-46 (195)
330 1c1y_A RAS-related protein RAP 94.0 0.024 8E-07 51.1 2.7 22 325-346 5-26 (167)
331 1zuh_A Shikimate kinase; alpha 94.0 0.03 1E-06 51.4 3.4 24 323-346 7-30 (168)
332 3pqc_A Probable GTP-binding pr 94.0 0.023 7.8E-07 52.7 2.6 23 325-347 25-47 (195)
333 1z08_A RAS-related protein RAB 94.0 0.024 8.2E-07 51.3 2.7 22 325-346 8-29 (170)
334 3cmw_A Protein RECA, recombina 94.0 0.26 8.9E-06 61.2 12.5 35 311-345 369-405 (1706)
335 1ky3_A GTP-binding protein YPT 94.0 0.024 8.3E-07 51.8 2.7 23 325-347 10-32 (182)
336 1wms_A RAB-9, RAB9, RAS-relate 93.9 0.025 8.7E-07 51.6 2.7 22 325-346 9-30 (177)
337 1g16_A RAS-related protein SEC 93.9 0.023 7.9E-07 51.3 2.4 22 326-347 6-27 (170)
338 3bgw_A DNAB-like replicative h 93.9 0.17 5.9E-06 54.5 9.7 36 310-345 184-219 (444)
339 2cdn_A Adenylate kinase; phosp 93.9 0.034 1.2E-06 52.7 3.7 25 322-346 19-43 (201)
340 1ek0_A Protein (GTP-binding pr 93.9 0.032 1.1E-06 50.3 3.3 23 325-347 5-27 (170)
341 2fn4_A P23, RAS-related protei 93.9 0.023 8E-07 51.9 2.4 22 325-346 11-32 (181)
342 2ew1_A RAS-related protein RAB 93.9 0.044 1.5E-06 52.1 4.4 22 325-346 28-49 (201)
343 2cxx_A Probable GTP-binding pr 93.8 0.032 1.1E-06 51.6 3.3 22 326-347 4-25 (190)
344 3fb4_A Adenylate kinase; psych 93.8 0.031 1.1E-06 53.5 3.2 22 325-346 2-23 (216)
345 2pbr_A DTMP kinase, thymidylat 93.8 0.031 1.1E-06 52.1 3.2 23 325-347 2-24 (195)
346 1ukz_A Uridylate kinase; trans 93.8 0.033 1.1E-06 52.8 3.4 25 322-346 14-38 (203)
347 3u61_B DNA polymerase accessor 93.8 0.15 5.2E-06 51.9 8.7 42 448-490 105-147 (324)
348 3a4m_A L-seryl-tRNA(SEC) kinas 93.8 0.033 1.1E-06 55.4 3.6 25 322-346 3-27 (260)
349 3t1o_A Gliding protein MGLA; G 93.8 0.029 9.8E-07 52.1 2.8 24 325-348 16-39 (198)
350 4dsu_A GTPase KRAS, isoform 2B 93.8 0.028 9.5E-07 51.9 2.7 23 325-347 6-28 (189)
351 1xx6_A Thymidine kinase; NESG, 93.7 0.055 1.9E-06 51.5 4.8 51 448-503 81-142 (191)
352 1r2q_A RAS-related protein RAB 93.7 0.028 9.6E-07 50.7 2.7 22 325-346 8-29 (170)
353 1sky_E F1-ATPase, F1-ATP synth 93.7 0.014 4.7E-07 63.3 0.6 46 310-356 139-184 (473)
354 1m7b_A RND3/RHOE small GTP-bin 93.7 0.04 1.4E-06 51.1 3.8 22 325-346 9-30 (184)
355 1qf9_A UMP/CMP kinase, protein 93.7 0.032 1.1E-06 51.9 3.1 24 323-346 6-29 (194)
356 2oil_A CATX-8, RAS-related pro 93.7 0.028 9.6E-07 52.4 2.7 23 325-347 27-49 (193)
357 1zak_A Adenylate kinase; ATP:A 93.7 0.028 9.4E-07 54.3 2.7 26 322-347 4-29 (222)
358 1wf3_A GTP-binding protein; GT 93.7 0.033 1.1E-06 56.9 3.3 22 325-346 9-30 (301)
359 2hxs_A RAB-26, RAS-related pro 93.7 0.033 1.1E-06 50.9 3.1 22 325-346 8-29 (178)
360 1e6c_A Shikimate kinase; phosp 93.6 0.03 1E-06 51.3 2.7 23 324-346 3-25 (173)
361 2pt5_A Shikimate kinase, SK; a 93.6 0.037 1.3E-06 50.5 3.3 22 325-346 2-23 (168)
362 1upt_A ARL1, ADP-ribosylation 93.6 0.03 1E-06 50.7 2.7 22 325-346 9-30 (171)
363 3clv_A RAB5 protein, putative; 93.6 0.03 1E-06 52.1 2.7 23 325-347 9-31 (208)
364 3bc1_A RAS-related protein RAB 93.6 0.03 1E-06 51.7 2.7 22 325-346 13-34 (195)
365 3dl0_A Adenylate kinase; phosp 93.6 0.036 1.2E-06 53.1 3.2 22 325-346 2-23 (216)
366 1r8s_A ADP-ribosylation factor 93.6 0.032 1.1E-06 50.2 2.7 20 326-345 3-22 (164)
367 2iyv_A Shikimate kinase, SK; t 93.5 0.031 1.1E-06 52.0 2.6 23 324-346 3-25 (184)
368 2xtp_A GTPase IMAP family memb 93.5 0.033 1.1E-06 55.1 2.9 23 325-347 24-46 (260)
369 1sxj_B Activator 1 37 kDa subu 93.5 0.093 3.2E-06 53.0 6.3 43 447-490 106-148 (323)
370 3a1s_A Iron(II) transport prot 93.5 0.037 1.3E-06 55.2 3.2 23 325-347 7-29 (258)
371 3t5g_A GTP-binding protein RHE 93.5 0.057 1.9E-06 49.6 4.3 21 325-345 8-28 (181)
372 1z0f_A RAB14, member RAS oncog 93.4 0.034 1.2E-06 50.7 2.7 23 325-347 17-39 (179)
373 3euj_A Chromosome partition pr 93.4 0.092 3.1E-06 57.2 6.5 76 423-503 372-464 (483)
374 1ksh_A ARF-like protein 2; sma 93.4 0.039 1.3E-06 51.0 3.1 25 323-347 18-42 (186)
375 2g6b_A RAS-related protein RAB 93.4 0.034 1.2E-06 50.9 2.7 23 325-347 12-34 (180)
376 3con_A GTPase NRAS; structural 93.4 0.034 1.2E-06 51.6 2.7 22 325-346 23-44 (190)
377 2a9k_A RAS-related protein RAL 93.4 0.034 1.2E-06 51.0 2.7 22 325-346 20-41 (187)
378 3t5d_A Septin-7; GTP-binding p 93.4 0.034 1.2E-06 55.7 2.8 23 325-347 10-32 (274)
379 2y8e_A RAB-protein 6, GH09086P 93.3 0.032 1.1E-06 50.8 2.4 22 325-346 16-37 (179)
380 3cnl_A YLQF, putative uncharac 93.3 0.043 1.5E-06 54.9 3.4 30 324-353 100-129 (262)
381 1nrj_B SR-beta, signal recogni 93.3 0.036 1.2E-06 52.9 2.7 23 325-347 14-36 (218)
382 3i8s_A Ferrous iron transport 93.3 0.037 1.3E-06 55.6 2.9 23 325-347 5-27 (274)
383 1vg8_A RAS-related protein RAB 93.2 0.038 1.3E-06 52.0 2.7 23 325-347 10-32 (207)
384 2xb4_A Adenylate kinase; ATP-b 93.2 0.045 1.6E-06 53.0 3.3 22 325-346 2-23 (223)
385 2grj_A Dephospho-COA kinase; T 93.2 0.046 1.6E-06 52.1 3.2 24 323-346 12-35 (192)
386 3tlx_A Adenylate kinase 2; str 93.2 0.049 1.7E-06 53.7 3.5 24 322-345 28-51 (243)
387 2efe_B Small GTP-binding prote 93.2 0.039 1.4E-06 50.5 2.7 23 325-347 14-36 (181)
388 2bov_A RAla, RAS-related prote 93.2 0.038 1.3E-06 51.8 2.7 22 325-346 16-37 (206)
389 2bme_A RAB4A, RAS-related prot 93.2 0.036 1.2E-06 51.1 2.4 23 325-347 12-34 (186)
390 1w5s_A Origin recognition comp 93.1 0.17 5.9E-06 53.0 7.9 25 323-347 50-76 (412)
391 2gf0_A GTP-binding protein DI- 93.1 0.037 1.3E-06 51.6 2.4 22 325-346 10-31 (199)
392 2gf9_A RAS-related protein RAB 93.1 0.041 1.4E-06 51.2 2.7 23 325-347 24-46 (189)
393 2il1_A RAB12; G-protein, GDP, 93.1 0.045 1.5E-06 51.2 3.0 22 325-346 28-49 (192)
394 1a7j_A Phosphoribulokinase; tr 93.1 0.029 1E-06 57.0 1.7 26 322-347 4-29 (290)
395 1uj2_A Uridine-cytidine kinase 93.0 0.049 1.7E-06 53.8 3.2 23 324-346 23-45 (252)
396 1mh1_A RAC1; GTP-binding, GTPa 93.0 0.042 1.5E-06 50.4 2.7 22 325-346 7-28 (186)
397 2h57_A ADP-ribosylation factor 93.0 0.037 1.3E-06 51.5 2.2 23 325-347 23-45 (190)
398 3iev_A GTP-binding protein ERA 93.0 0.049 1.7E-06 55.7 3.3 22 325-346 12-33 (308)
399 1zbd_A Rabphilin-3A; G protein 93.0 0.049 1.7E-06 51.2 3.1 23 325-347 10-32 (203)
400 3kkq_A RAS-related protein M-R 93.0 0.053 1.8E-06 49.8 3.3 22 325-346 20-41 (183)
401 3tkl_A RAS-related protein RAB 92.9 0.054 1.8E-06 50.3 3.3 23 325-347 18-40 (196)
402 3v9p_A DTMP kinase, thymidylat 92.9 0.047 1.6E-06 53.5 2.9 29 320-348 22-50 (227)
403 2cjw_A GTP-binding protein GEM 92.9 0.044 1.5E-06 51.5 2.7 22 325-346 8-29 (192)
404 2wsm_A Hydrogenase expression/ 92.9 0.044 1.5E-06 52.4 2.7 24 324-347 31-54 (221)
405 2fg5_A RAB-22B, RAS-related pr 92.9 0.041 1.4E-06 51.4 2.4 23 325-347 25-47 (192)
406 4edh_A DTMP kinase, thymidylat 92.9 0.058 2E-06 52.3 3.5 29 321-349 4-32 (213)
407 2o52_A RAS-related protein RAB 92.9 0.047 1.6E-06 51.5 2.8 22 325-346 27-48 (200)
408 1zj6_A ADP-ribosylation factor 92.8 0.049 1.7E-06 50.5 2.8 23 324-346 17-39 (187)
409 1gwn_A RHO-related GTP-binding 92.8 0.065 2.2E-06 51.0 3.8 23 325-347 30-52 (205)
410 4dhe_A Probable GTP-binding pr 92.8 0.027 9.4E-07 53.8 1.1 24 324-347 30-53 (223)
411 4bas_A ADP-ribosylation factor 92.8 0.053 1.8E-06 50.5 3.0 22 325-346 19-40 (199)
412 2a5j_A RAS-related protein RAB 92.8 0.048 1.6E-06 50.8 2.7 23 325-347 23-45 (191)
413 3llu_A RAS-related GTP-binding 92.7 0.054 1.9E-06 50.8 3.0 25 325-349 22-46 (196)
414 3oes_A GTPase rhebl1; small GT 92.7 0.044 1.5E-06 51.6 2.4 23 325-347 26-48 (201)
415 3bwd_D RAC-like GTP-binding pr 92.7 0.049 1.7E-06 49.9 2.7 22 325-346 10-31 (182)
416 3vfd_A Spastin; ATPase, microt 92.7 0.21 7.3E-06 52.5 7.9 25 322-346 147-171 (389)
417 1z06_A RAS-related protein RAB 92.7 0.051 1.7E-06 50.5 2.7 22 325-346 22-43 (189)
418 2qu8_A Putative nucleolar GTP- 92.7 0.055 1.9E-06 52.2 3.1 22 325-346 31-52 (228)
419 2v3c_C SRP54, signal recogniti 92.7 0.019 6.6E-07 61.8 -0.3 39 323-361 99-137 (432)
420 3reg_A RHO-like small GTPase; 92.7 0.05 1.7E-06 50.8 2.7 23 325-347 25-47 (194)
421 3dz8_A RAS-related protein RAB 92.7 0.046 1.6E-06 51.0 2.4 23 325-347 25-47 (191)
422 1jwy_B Dynamin A GTPase domain 92.6 0.051 1.7E-06 55.2 2.8 23 325-347 26-48 (315)
423 1zd9_A ADP-ribosylation factor 92.6 0.052 1.8E-06 50.5 2.7 22 325-346 24-45 (188)
424 2h17_A ADP-ribosylation factor 92.6 0.048 1.6E-06 50.4 2.4 22 325-346 23-44 (181)
425 2atv_A RERG, RAS-like estrogen 92.6 0.053 1.8E-06 50.8 2.7 22 325-346 30-51 (196)
426 2bcg_Y Protein YP2, GTP-bindin 92.6 0.048 1.6E-06 51.5 2.4 23 325-347 10-32 (206)
427 1x3s_A RAS-related protein RAB 92.5 0.053 1.8E-06 50.2 2.7 22 325-346 17-38 (195)
428 3c5c_A RAS-like protein 12; GD 92.5 0.086 2.9E-06 49.1 4.1 22 325-346 23-44 (187)
429 3be4_A Adenylate kinase; malar 92.5 0.06 2.1E-06 51.8 3.1 26 322-347 4-29 (217)
430 2f6r_A COA synthase, bifunctio 92.5 0.057 1.9E-06 54.5 3.0 23 323-345 75-97 (281)
431 2f7s_A C25KG, RAS-related prot 92.5 0.063 2.2E-06 51.0 3.2 23 325-347 27-49 (217)
432 2p5s_A RAS and EF-hand domain 92.5 0.054 1.9E-06 50.9 2.7 23 325-347 30-52 (199)
433 2orv_A Thymidine kinase; TP4A 92.5 0.23 7.8E-06 48.7 7.1 51 447-503 89-150 (234)
434 2q3h_A RAS homolog gene family 92.5 0.063 2.2E-06 50.3 3.1 22 325-346 22-43 (201)
435 3tqf_A HPR(Ser) kinase; transf 92.4 0.11 3.6E-06 48.9 4.4 35 310-345 4-38 (181)
436 1e4v_A Adenylate kinase; trans 92.4 0.061 2.1E-06 51.5 3.0 22 325-346 2-23 (214)
437 3lv8_A DTMP kinase, thymidylat 92.4 0.067 2.3E-06 52.7 3.3 27 322-348 26-52 (236)
438 3def_A T7I23.11 protein; chlor 92.4 0.063 2.2E-06 53.4 3.1 23 325-347 38-60 (262)
439 2j1l_A RHO-related GTP-binding 92.4 0.061 2.1E-06 51.4 2.9 22 325-346 36-57 (214)
440 2iwr_A Centaurin gamma 1; ANK 92.3 0.044 1.5E-06 50.1 1.8 22 325-346 9-30 (178)
441 3cph_A RAS-related protein SEC 92.3 0.059 2E-06 50.9 2.7 22 325-346 22-43 (213)
442 4tmk_A Protein (thymidylate ki 92.3 0.074 2.5E-06 51.5 3.3 27 322-348 2-28 (213)
443 1jbk_A CLPB protein; beta barr 92.2 0.084 2.9E-06 48.3 3.6 25 323-347 43-67 (195)
444 2fh5_B SR-beta, signal recogni 92.2 0.078 2.7E-06 50.3 3.4 23 325-347 9-31 (214)
445 2fu5_C RAS-related protein RAB 92.2 0.045 1.6E-06 50.3 1.7 22 325-346 10-31 (183)
446 1ak2_A Adenylate kinase isoenz 92.2 0.083 2.8E-06 51.4 3.6 26 322-347 15-40 (233)
447 2b6h_A ADP-ribosylation factor 92.2 0.064 2.2E-06 50.3 2.7 23 324-346 30-52 (192)
448 2fv8_A H6, RHO-related GTP-bin 92.1 0.059 2E-06 51.1 2.4 23 325-347 27-49 (207)
449 1ltq_A Polynucleotide kinase; 92.1 0.076 2.6E-06 53.6 3.3 31 324-357 3-33 (301)
450 2h92_A Cytidylate kinase; ross 92.1 0.071 2.4E-06 51.0 2.9 25 323-347 3-27 (219)
451 3tmk_A Thymidylate kinase; pho 91.9 0.086 2.9E-06 51.2 3.3 33 321-354 3-35 (216)
452 2aka_B Dynamin-1; fusion prote 91.8 0.068 2.3E-06 53.7 2.6 24 325-348 28-51 (299)
453 3umf_A Adenylate kinase; rossm 91.8 0.079 2.7E-06 51.5 3.0 28 319-346 25-52 (217)
454 2g3y_A GTP-binding protein GEM 91.8 0.085 2.9E-06 50.8 3.2 23 325-347 39-61 (211)
455 1h65_A Chloroplast outer envel 91.8 0.074 2.5E-06 53.0 2.8 23 325-347 41-63 (270)
456 2gco_A H9, RHO-related GTP-bin 91.8 0.067 2.3E-06 50.4 2.4 23 325-347 27-49 (201)
457 3d3q_A TRNA delta(2)-isopenten 91.8 0.084 2.9E-06 54.9 3.2 25 324-348 8-32 (340)
458 3ld9_A DTMP kinase, thymidylat 91.7 0.1 3.4E-06 51.0 3.5 28 321-348 19-46 (223)
459 2atx_A Small GTP binding prote 91.7 0.071 2.4E-06 49.6 2.4 22 325-346 20-41 (194)
460 3exa_A TRNA delta(2)-isopenten 91.6 0.099 3.4E-06 53.7 3.6 25 323-347 3-27 (322)
461 2qmh_A HPR kinase/phosphorylas 91.5 0.15 5E-06 49.0 4.4 35 311-346 23-57 (205)
462 4djt_A GTP-binding nuclear pro 91.5 0.044 1.5E-06 52.2 0.8 23 325-347 13-35 (218)
463 2ocp_A DGK, deoxyguanosine kin 91.5 0.098 3.3E-06 51.1 3.3 26 322-347 1-26 (241)
464 1ypw_A Transitional endoplasmi 91.5 0.036 1.2E-06 64.4 0.1 43 316-360 504-546 (806)
465 3a8t_A Adenylate isopentenyltr 91.5 0.1 3.5E-06 54.1 3.5 26 322-347 39-64 (339)
466 2i1q_A DNA repair and recombin 91.4 0.11 3.7E-06 53.3 3.6 27 319-345 94-120 (322)
467 2x77_A ADP-ribosylation factor 91.4 0.064 2.2E-06 49.7 1.7 22 324-345 23-44 (189)
468 1a5t_A Delta prime, HOLB; zinc 91.3 0.51 1.7E-05 48.5 8.6 43 447-490 107-149 (334)
469 2yc2_C IFT27, small RAB-relate 91.3 0.045 1.5E-06 51.3 0.5 22 325-346 22-43 (208)
470 2hf9_A Probable hydrogenase ni 91.2 0.089 3E-06 50.4 2.6 23 325-347 40-62 (226)
471 2hup_A RAS-related protein RAB 91.2 0.085 2.9E-06 49.8 2.4 22 325-346 31-52 (201)
472 3cpj_B GTP-binding protein YPT 91.1 0.095 3.2E-06 50.3 2.7 23 325-347 15-37 (223)
473 2j9r_A Thymidine kinase; TK1, 91.1 0.45 1.5E-05 46.0 7.4 51 448-503 101-162 (214)
474 3crm_A TRNA delta(2)-isopenten 91.1 0.11 3.8E-06 53.6 3.3 24 324-347 6-29 (323)
475 3cmu_A Protein RECA, recombina 91.1 0.23 7.8E-06 62.6 6.6 35 310-344 1066-1102(2050)
476 3p32_A Probable GTPase RV1496/ 91.0 0.09 3.1E-06 54.9 2.5 27 323-349 79-105 (355)
477 4gzl_A RAS-related C3 botulinu 90.9 0.093 3.2E-06 49.6 2.4 21 325-345 32-52 (204)
478 2p65_A Hypothetical protein PF 90.9 0.11 3.6E-06 47.6 2.7 26 323-348 43-68 (187)
479 1p5z_B DCK, deoxycytidine kina 90.8 0.083 2.9E-06 52.4 2.0 27 321-347 22-48 (263)
480 2j0v_A RAC-like GTP-binding pr 90.8 0.097 3.3E-06 49.5 2.4 22 325-346 11-32 (212)
481 2orw_A Thymidine kinase; TMTK, 90.7 0.14 4.7E-06 48.3 3.3 52 447-503 75-137 (184)
482 3q3j_B RHO-related GTP-binding 90.6 0.11 3.8E-06 49.6 2.7 22 325-346 29-50 (214)
483 3pxi_A Negative regulator of g 90.5 0.45 1.5E-05 54.7 8.0 23 325-347 523-545 (758)
484 1puj_A YLQF, conserved hypothe 90.4 0.17 5.7E-06 51.2 3.8 30 323-352 120-149 (282)
485 1lnz_A SPO0B-associated GTP-bi 90.4 0.18 6.2E-06 52.5 4.2 33 314-346 149-181 (342)
486 3foz_A TRNA delta(2)-isopenten 90.3 0.16 5.4E-06 52.1 3.6 25 323-347 10-34 (316)
487 1wxq_A GTP-binding protein; st 90.2 0.13 4.3E-06 54.8 2.9 42 407-454 180-221 (397)
488 3sr0_A Adenylate kinase; phosp 90.1 0.16 5.4E-06 48.9 3.2 22 325-346 2-23 (206)
489 2zts_A Putative uncharacterize 90.0 0.2 7E-06 48.4 4.0 25 319-343 26-50 (251)
490 2r62_A Cell division protease 89.9 0.046 1.6E-06 54.2 -0.8 30 315-346 38-67 (268)
491 4hlc_A DTMP kinase, thymidylat 89.9 0.18 6.3E-06 48.3 3.4 26 323-348 2-27 (205)
492 1g5t_A COB(I)alamin adenosyltr 89.6 0.24 8.1E-06 47.4 3.9 71 436-506 106-181 (196)
493 2xxa_A Signal recognition part 89.4 2.9 0.0001 44.7 12.9 40 322-361 99-139 (433)
494 4a9a_A Ribosome-interacting GT 89.2 0.18 6.3E-06 53.1 3.1 36 325-360 74-120 (376)
495 3th5_A RAS-related C3 botulinu 88.8 0.073 2.5E-06 50.1 0.0 21 325-345 32-52 (204)
496 2hjg_A GTP-binding protein ENG 89.1 0.17 5.8E-06 54.3 2.8 22 325-346 5-26 (436)
497 3l0i_B RAS-related protein RAB 89.0 0.052 1.8E-06 51.0 -1.2 23 325-347 35-57 (199)
498 3gj0_A GTP-binding nuclear pro 88.7 0.13 4.3E-06 49.2 1.4 21 326-346 18-39 (221)
499 3sjy_A Translation initiation 88.7 0.22 7.6E-06 52.8 3.4 23 325-347 10-32 (403)
500 3r7w_A Gtpase1, GTP-binding pr 88.6 0.26 8.9E-06 50.2 3.7 23 324-346 4-26 (307)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=7.6e-56 Score=468.85 Aligned_cols=228 Identities=28% Similarity=0.437 Sum_probs=207.8
Q ss_pred CCCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc---
Q 007178 288 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--- 364 (614)
Q Consensus 288 ~~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~--- 364 (614)
..++|+++||+|+|++.. ..+.||+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++...
T Consensus 21 ~~~mi~v~~ls~~y~~~~--~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~ 98 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGT--RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSES 98 (366)
T ss_dssp --CCEEEEEEEEEEECSS--SEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHH
T ss_pred CCceEEEEeEEEEeCCCC--CCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHH
Confidence 345899999999997421 136799999999999999999999999999999999999999999999999998642
Q ss_pred -HHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 007178 365 -MDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 443 (614)
Q Consensus 365 -~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~ 443 (614)
..+.|++|||+||++.+++.+||+||+.++....+.++++.+++++++++.+||. +++++++++|||||||||+|||
T Consensus 99 ~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~--~~~~~~~~~LSGGqkQRVaIAr 176 (366)
T 3tui_C 99 ELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG--DKHDSYPSNLSGGQKQRVAIAR 176 (366)
T ss_dssp HHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG--GGTTCCTTTSCHHHHHHHHHHH
T ss_pred HHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc--hHhcCChhhCCHHHHHHHHHHH
Confidence 2345788999999999999999999999988888877778888999999999997 4889999999999999999999
Q ss_pred HHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 444 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 444 al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~--~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
||+.+|++|||||||+||||.+++.++++|++++ .|+|||++||||+++..+||||++|++|++++.|+++++...
T Consensus 177 AL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~ 254 (366)
T 3tui_C 177 ALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 254 (366)
T ss_dssp HTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSS
T ss_pred HHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999999863 499999999999999999999999999999999999988653
No 2
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=3.1e-55 Score=463.92 Aligned_cols=221 Identities=25% Similarity=0.403 Sum_probs=203.8
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC---cHHH
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---DMDR 367 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~---~~~~ 367 (614)
+|+++||+|+|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ....
T Consensus 4 ~l~i~~ls~~y~~------~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~ 77 (359)
T 3fvq_A 4 ALHIGHLSKSFQN------TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPV 77 (359)
T ss_dssp CEEEEEEEEEETT------EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCG
T ss_pred EEEEEeEEEEECC------EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccch
Confidence 6999999999973 679999999999999999999999999999999999999999999999999832 2233
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhC
Q 007178 368 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 447 (614)
Q Consensus 368 ~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~ 447 (614)
.+++|||+||++.+|+.+||+||+.|+.+.++.++++.+++++++++.+||. ++.++++.+|||||||||+|||||+.
T Consensus 78 ~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~--~~~~r~~~~LSGGq~QRValArAL~~ 155 (359)
T 3fvq_A 78 RERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGIS--ELAGRYPHELSGGQQQRAALARALAP 155 (359)
T ss_dssp GGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCG--GGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred hhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCc--hHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 4678999999999999999999999987777777777888999999999997 48999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 448 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 448 ~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
+|++|||||||+|||+..++++++.+++. + .|+|||++|||++++..+||||++|++|+++..|+++++.++
T Consensus 156 ~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 156 DPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 99999999999999999999999988764 3 599999999999999999999999999999999999998765
No 3
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.7e-54 Score=442.13 Aligned_cols=222 Identities=24% Similarity=0.428 Sum_probs=201.9
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCC---CcHH
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR---TDMD 366 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~---~~~~ 366 (614)
.+|+++||+|+|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++. ....
T Consensus 23 ~~l~i~~l~~~y~~------~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~ 96 (263)
T 2olj_A 23 QMIDVHQLKKSFGS------LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 96 (263)
T ss_dssp CSEEEEEEEEEETT------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHH
T ss_pred heEEEEeEEEEECC------EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHH
Confidence 36999999999963 57999999999999999999999999999999999999999999999999984 2334
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHh-hhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 007178 367 RIYTSMGVCPQEDLLWETLTGREHLLFYG-RLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 445 (614)
Q Consensus 367 ~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al 445 (614)
..++++||+||++.+++.+||+||+.++. ...+.+.++.+++++++++.++|. +..++++.+||||||||++|||||
T Consensus 97 ~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~LSgGqkQRv~lAraL 174 (263)
T 2olj_A 97 KVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLK--DKAHAYPDSLSGGQAQRVAIARAL 174 (263)
T ss_dssp HHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCG--GGTTSCGGGSCHHHHHHHHHHHHH
T ss_pred HHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc--hHhcCChhhCCHHHHHHHHHHHHH
Confidence 45678999999999999999999999864 455555555667899999999996 478999999999999999999999
Q ss_pred hCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 446 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 446 ~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
+.+|+++||||||+||||.+++.++++|+++ ++|+|||++|||+++++.+|||+++|++|++++.|+++++.+.
T Consensus 175 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
T 2olj_A 175 AMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249 (263)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999986 4699999999999999999999999999999999999998754
No 4
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.3e-54 Score=441.30 Aligned_cols=224 Identities=30% Similarity=0.538 Sum_probs=205.3
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHh
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 368 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~ 368 (614)
.++|+++||+|+|++ +.+|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++.......
T Consensus 13 ~~~l~i~~l~~~y~~------~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~ 86 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGK------KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEV 86 (256)
T ss_dssp -CCEEEEEEEEEETT------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHH
T ss_pred CCeEEEEEEEEEECC------EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHH
Confidence 357999999999963 57999999999999999999999999999999999999999999999999986555566
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCC
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 448 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~ 448 (614)
++.+||+||++.+++.+||+||+.++....+.+.++.+++++++++.+||. +..++++.+||||||||++|||||+.+
T Consensus 87 ~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LSgGq~qRv~lAraL~~~ 164 (256)
T 1vpl_A 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG--EKIKDRVSTYSKGMVRKLLIARALMVN 164 (256)
T ss_dssp HTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCG--GGGGSBGGGCCHHHHHHHHHHHHHTTC
T ss_pred hhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCc--hHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 788999999999999999999999987666655555567889999999996 478999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHhc
Q 007178 449 PKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 520 (614)
Q Consensus 449 p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 520 (614)
|+++||||||+||||.+++.++++|++++ +|+|||++||++++++.+|||+++|++|++++.|+++++.+.+
T Consensus 165 p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 237 (256)
T 1vpl_A 165 PRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERY 237 (256)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHT
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHHhc
Confidence 99999999999999999999999999864 6999999999999999999999999999999999999997764
No 5
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=6.7e-55 Score=447.71 Aligned_cols=223 Identities=26% Similarity=0.415 Sum_probs=202.3
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC---cHH
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---DMD 366 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~---~~~ 366 (614)
++|+++||+|+|++ .+.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. ...
T Consensus 6 ~~l~i~~ls~~y~~-----~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~ 80 (275)
T 3gfo_A 6 YILKVEELNYNYSD-----GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIM 80 (275)
T ss_dssp EEEEEEEEEEECTT-----SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHH
T ss_pred cEEEEEEEEEEECC-----CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHH
Confidence 47999999999974 2459999999999999999999999999999999999999999999999999842 234
Q ss_pred HhhcceEEEcCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 007178 367 RIYTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 445 (614)
Q Consensus 367 ~~~~~ig~~~Q~~~-l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al 445 (614)
+.+++|||+||++. .+..+||+||+.++....+.+.++.+++++++++.+||. ++.++++.+||||||||++|||||
T Consensus 81 ~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~LSgGqkQRv~iAraL 158 (275)
T 3gfo_A 81 KLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIE--HLKDKPTHCLSFGQKKRVAIAGVL 158 (275)
T ss_dssp HHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCG--GGTTSBGGGSCHHHHHHHHHHHHH
T ss_pred HHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hhhcCCcccCCHHHHHHHHHHHHH
Confidence 56788999999862 333689999999988777777777788999999999996 488999999999999999999999
Q ss_pred hCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 446 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 446 ~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~--~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
+.+|++|||||||+||||.+++.++++|++++ +|+|||++|||++++..+||||++|++|++++.|+++++.+.
T Consensus 159 ~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 159 VMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999999864 499999999999999999999999999999999999998653
No 6
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.2e-54 Score=462.28 Aligned_cols=220 Identities=27% Similarity=0.451 Sum_probs=205.6
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhc
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 370 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~ 370 (614)
.|+++||+|+|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..... .++
T Consensus 3 ~l~~~~l~~~yg~------~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~-~~r 75 (381)
T 3rlf_A 3 SVQLQNVTKAWGE------VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP-AER 75 (381)
T ss_dssp CEEEEEEEEEETT------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG-GGS
T ss_pred EEEEEeEEEEECC------EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCH-HHC
Confidence 5899999999973 679999999999999999999999999999999999999999999999999865332 347
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCC
Q 007178 371 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 450 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~ 450 (614)
+|||+||++.+||.+||+||+.|+.+.++.++++.+++++++++.++|. ++.++++.+||||||||++|||||+.+|+
T Consensus 76 ~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~--~~~~r~p~~LSGGqrQRVaiArAL~~~P~ 153 (381)
T 3rlf_A 76 GVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLA--HLLDRKPKALSGGQRQRVAIGRTLVAEPS 153 (381)
T ss_dssp CEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCG--GGTTCCGGGSCHHHHHHHHHHHHHHHCCS
T ss_pred CEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hhhcCChhHCCHHHHHHHHHHHHHHcCCC
Confidence 8999999999999999999999998888888888889999999999997 48999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 451 VVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 451 vllLDEPtsgLD~~~~~~i~~~l~~~-~~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
+|||||||+|||+..++++++.|+++ ++ |+|||++|||++|+..+||||++|++|+++..|+++++.++
T Consensus 154 lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~ 224 (381)
T 3rlf_A 154 VFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (381)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhC
Confidence 99999999999999999999999986 44 99999999999999999999999999999999999998654
No 7
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=2.7e-54 Score=440.88 Aligned_cols=222 Identities=23% Similarity=0.415 Sum_probs=200.8
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC------
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT------ 363 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~------ 363 (614)
++++++||+|+|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++..
T Consensus 5 ~~l~i~~l~~~y~~------~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 78 (262)
T 1b0u_A 5 NKLHVIDLHKRYGG------HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDG 78 (262)
T ss_dssp CCEEEEEEEEEETT------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTS
T ss_pred ceEEEeeEEEEECC------EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccc
Confidence 36999999999973 579999999999999999999999999999999999999999999999999851
Q ss_pred -----c---HHHhhcceEEEcCCCCCCCCCCHHHHHHHHh-hhcCCCchhHHHHHHHHHHHcCCCCCCc-ccccCCCCCh
Q 007178 364 -----D---MDRIYTSMGVCPQEDLLWETLTGREHLLFYG-RLKNLKGPALTQAVEESLKSVNLFHGGV-ADKQAGKYSG 433 (614)
Q Consensus 364 -----~---~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~~~LSg 433 (614)
. ....++.+||+||++.+++.+||+||+.++. ...+.+.++.+++++++++.+||. +. .++++.+|||
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~~LSg 156 (262)
T 1b0u_A 79 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGID--ERAQGKYPVHLSG 156 (262)
T ss_dssp SEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCC--HHHHTSCGGGSCH
T ss_pred cccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCC--chhhcCCcccCCH
Confidence 1 1345678999999999999999999999864 445555555667899999999996 47 8999999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcC
Q 007178 434 GMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 512 (614)
Q Consensus 434 G~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~ 512 (614)
|||||++|||||+.+|+++||||||+||||.+++.++++|+++ ++|+|||++|||++++..+|||+++|++|++++.|+
T Consensus 157 Gq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~ 236 (262)
T 1b0u_A 157 GQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGD 236 (262)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999986 469999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 007178 513 PKELKAR 519 (614)
Q Consensus 513 ~~~l~~~ 519 (614)
++++.+.
T Consensus 237 ~~~~~~~ 243 (262)
T 1b0u_A 237 PEQVFGN 243 (262)
T ss_dssp HHHHHHS
T ss_pred HHHHHhC
Confidence 9998654
No 8
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=4.4e-54 Score=432.54 Aligned_cols=223 Identities=22% Similarity=0.402 Sum_probs=193.5
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc-HH---
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MD--- 366 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~-~~--- 366 (614)
+++++||+|+|++.. ..+.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ..
T Consensus 1 ~l~~~~l~~~y~~~~--~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~ 78 (235)
T 3tif_A 1 MVKLKNVTKTYKMGE--EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELT 78 (235)
T ss_dssp CEEEEEEEEEEEETT--EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHH
T ss_pred CEEEEEEEEEeCCCC--cceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHH
Confidence 478999999997421 125699999999999999999999999999999999999999999999999998642 21
Q ss_pred H-hhcceEEEcCCCCCCCCCCHHHHHHHHhhhc---CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHH
Q 007178 367 R-IYTSMGVCPQEDLLWETLTGREHLLFYGRLK---NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 442 (614)
Q Consensus 367 ~-~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia 442 (614)
+ .++++||+||++.+++.+||+||+.+....+ +.+.++..+++.++++.+++.+ ...++++.+||||||||++||
T Consensus 79 ~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGq~QRv~iA 157 (235)
T 3tif_A 79 KIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEE-RFANHKPNQLSGGQQQRVAIA 157 (235)
T ss_dssp HHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCG-GGTTCCGGGSCHHHHHHHHHH
T ss_pred HHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCCh-hhhhCChhhCCHHHHHHHHHH
Confidence 1 2356999999999999999999999876543 3445566778999999999963 235999999999999999999
Q ss_pred HHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHH
Q 007178 443 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 517 (614)
Q Consensus 443 ~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 517 (614)
|||+.+|++|||||||+||||.++++++++|+++ ++ |+|||++|||++.+ .+|||+++|++|+++..++++++.
T Consensus 158 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~~~~~~~~~ 233 (235)
T 3tif_A 158 RALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREEKLRGFD 233 (235)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEECC---
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEcChhhhc
Confidence 9999999999999999999999999999999986 34 99999999999965 689999999999999999887764
No 9
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=9.3e-54 Score=427.15 Aligned_cols=214 Identities=22% Similarity=0.356 Sum_probs=194.0
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc-H---
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-M--- 365 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~-~--- 365 (614)
++++++|++|+|++ +.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... .
T Consensus 3 ~~l~~~~l~~~y~~------~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 76 (224)
T 2pcj_A 3 EILRAENIKKVIRG------YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKEL 76 (224)
T ss_dssp EEEEEEEEEEEETT------EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHH
T ss_pred cEEEEEeEEEEECC------EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHH
Confidence 36999999999973 5799999999999999999999999999999999999999999999999998542 1
Q ss_pred HHhh-cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 007178 366 DRIY-TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 444 (614)
Q Consensus 366 ~~~~-~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~a 444 (614)
...+ +++||+||++.+++.+||+||+.++...++.+.++.+++++++++.+||. +..++++++||||||||++||||
T Consensus 77 ~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGq~qrv~lara 154 (224)
T 2pcj_A 77 SLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLG--DKLSRKPYELSGGEQQRVAIARA 154 (224)
T ss_dssp HHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT--TCTTCCGGGSCHHHHHHHHHHHH
T ss_pred HHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCc--hhhhCChhhCCHHHHHHHHHHHH
Confidence 1233 67999999999999999999999877666655555667899999999997 47899999999999999999999
Q ss_pred HhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcC
Q 007178 445 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 512 (614)
Q Consensus 445 l~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~ 512 (614)
|+.+|+++||||||+|||+.+++.++++|+++ ++|+|||++|||++++ .+|||+++|++|++++.|+
T Consensus 155 l~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 155 LANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp TTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEE
T ss_pred HHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEee
Confidence 99999999999999999999999999999986 4699999999999998 7999999999999999885
No 10
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=9.2e-54 Score=452.74 Aligned_cols=222 Identities=29% Similarity=0.488 Sum_probs=204.5
Q ss_pred CCeEEEEeEEEEc-CCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHH
Q 007178 289 SHAIISDNLRKIY-PGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDR 367 (614)
Q Consensus 289 ~~~i~~~~l~k~y-~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~ 367 (614)
..+++++|++|+| ++ +.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.... .
T Consensus 12 ~~~l~~~~l~~~y~g~------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-~ 84 (355)
T 1z47_A 12 SMTIEFVGVEKIYPGG------ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLP-P 84 (355)
T ss_dssp CEEEEEEEEEECCTTS------TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCC-G
T ss_pred CceEEEEEEEEEEcCC------CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCC-h
Confidence 4579999999999 52 56999999999999999999999999999999999999999999999999986432 3
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhC
Q 007178 368 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 447 (614)
Q Consensus 368 ~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~ 447 (614)
.+++|||+||++.+|+.+||+||+.|+.+.++.++++.+++++++++.++|. ++.++++.+||||||||++|||||+.
T Consensus 85 ~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~--~~~~r~~~~LSGGq~QRvalArAL~~ 162 (355)
T 1z47_A 85 QKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLE--SYANRFPHELSGGQQQRVALARALAP 162 (355)
T ss_dssp GGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCG--GGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred hhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh--hHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 4678999999999999999999999987777766667778999999999996 48899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 448 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 448 ~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
+|++|||||||+|||+..++++++.|+++ ++ |+|||++|||++++..+|||+++|++|+++..|+++++.++
T Consensus 163 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 236 (355)
T 1z47_A 163 RPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEK 236 (355)
T ss_dssp CCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999986 34 99999999999999999999999999999999999998654
No 11
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=2e-53 Score=451.60 Aligned_cols=220 Identities=27% Similarity=0.455 Sum_probs=203.0
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhc
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 370 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~ 370 (614)
+++++|++|+|++ +.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..... .++
T Consensus 3 ~l~~~~l~~~y~~------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~-~~r 75 (362)
T 2it1_A 3 EIKLENIVKKFGN------FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPP-KDR 75 (362)
T ss_dssp CEEEEEEEEESSS------SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG-GGT
T ss_pred EEEEEeEEEEECC------EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCH-hHC
Confidence 5899999999963 579999999999999999999999999999999999999999999999999864322 357
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCC
Q 007178 371 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 450 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~ 450 (614)
+|||+||++.+|+.+||+||+.|+.+.++.++++.+++++++++.++|. ++.++++++||||||||++|||||+.+|+
T Consensus 76 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~--~~~~r~~~~LSGGq~QRvalArAL~~~P~ 153 (362)
T 2it1_A 76 NVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHID--KLLNRYPWQLSGGQQQRVAIARALVKEPE 153 (362)
T ss_dssp TEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT--TCTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc--hHhhCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 8999999999999999999999987777766667778899999999997 48999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 451 VVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 451 vllLDEPtsgLD~~~~~~i~~~l~~~-~~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
++||||||+|||+..++++++.|+++ ++ |+|+|++|||++++..+||||++|++|+++..|+++++.++
T Consensus 154 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~ 224 (362)
T 2it1_A 154 VLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYK 224 (362)
T ss_dssp EEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999986 33 99999999999999999999999999999999999998654
No 12
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-53 Score=452.96 Aligned_cols=220 Identities=29% Similarity=0.468 Sum_probs=201.2
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhc
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 370 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~ 370 (614)
+++++|++|+|++ +.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..... .++
T Consensus 3 ~l~~~~l~~~y~~------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~-~~r 75 (359)
T 2yyz_A 3 SIRVVNLKKYFGK------VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPP-KYR 75 (359)
T ss_dssp CEEEEEEEEEETT------EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG-GGT
T ss_pred EEEEEEEEEEECC------EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCCh-hhC
Confidence 5899999999973 579999999999999999999999999999999999999999999999999864322 357
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCC
Q 007178 371 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 450 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~ 450 (614)
++||+||++.+|+.+||+||+.|+.+.++.++++.+++++++++.++|. ++.++++++||||||||++|||||+.+|+
T Consensus 76 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~--~~~~r~~~~LSgGq~QRvalArAL~~~P~ 153 (359)
T 2yyz_A 76 EVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLID--NLLDRKPTQLSGGQQQRVALARALVKQPK 153 (359)
T ss_dssp TEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCG--GGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc--hHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 8999999999999999999999977666554455567899999999996 48999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 451 VVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 451 vllLDEPtsgLD~~~~~~i~~~l~~~-~~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
++||||||+|||+..++++++.|+++ ++ |+|+|++|||++++..+|||+++|++|+++..|+++++.++
T Consensus 154 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~ 224 (359)
T 2yyz_A 154 VLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDS 224 (359)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999986 33 99999999999999999999999999999999999998654
No 13
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.1e-53 Score=435.19 Aligned_cols=218 Identities=24% Similarity=0.413 Sum_probs=197.0
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc--HHH
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDR 367 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~--~~~ 367 (614)
++++++|++|+|++ +.+|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ...
T Consensus 6 ~~l~i~~l~~~y~~------~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 79 (257)
T 1g6h_A 6 EILRTENIVKYFGE------FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 79 (257)
T ss_dssp EEEEEEEEEEEETT------EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHH
T ss_pred cEEEEeeeEEEECC------EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHH
Confidence 47999999999973 5799999999999999999999999999999999999999999999999998642 234
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhh--cC-----------CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChh
Q 007178 368 IYTSMGVCPQEDLLWETLTGREHLLFYGRL--KN-----------LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG 434 (614)
Q Consensus 368 ~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~--~~-----------~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG 434 (614)
.++.+||+||++.+++.+||+||+.++... .+ ...++.+++++++++.+||. +..++++++||||
T Consensus 80 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG 157 (257)
T 1g6h_A 80 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS--HLYDRKAGELSGG 157 (257)
T ss_dssp HHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCG--GGTTSBGGGSCHH
T ss_pred HhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCc--hhhCCCchhCCHH
Confidence 567899999999999999999999886543 23 23345567889999999996 4789999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCH
Q 007178 435 MKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 513 (614)
Q Consensus 435 ~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~ 513 (614)
||||++|||||+.+|+++||||||+||||.+++.++++|+++ ++|+|||++|||++++..+|||+++|++|++++.|++
T Consensus 158 qkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 237 (257)
T 1g6h_A 158 QMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRG 237 (257)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEES
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCH
Confidence 999999999999999999999999999999999999999986 4599999999999999999999999999999999999
Q ss_pred HH
Q 007178 514 KE 515 (614)
Q Consensus 514 ~~ 515 (614)
++
T Consensus 238 ~~ 239 (257)
T 1g6h_A 238 EE 239 (257)
T ss_dssp HH
T ss_pred HH
Confidence 88
No 14
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.6e-53 Score=427.21 Aligned_cols=220 Identities=25% Similarity=0.406 Sum_probs=196.7
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc-HH-H
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MD-R 367 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~-~~-~ 367 (614)
++++++|++|+|++ +.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... .. .
T Consensus 5 ~~l~~~~l~~~y~~------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 78 (240)
T 1ji0_A 5 IVLEVQSLHVYYGA------IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78 (240)
T ss_dssp EEEEEEEEEEEETT------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHH
T ss_pred ceEEEEeEEEEECC------eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHH
Confidence 47999999999973 5799999999999999999999999999999999999999999999999998642 22 2
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcC-CCCCCcccccCCCCChhHHHHHHHHHHHh
Q 007178 368 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVN-LFHGGVADKQAGKYSGGMKRRLSVAISLI 446 (614)
Q Consensus 368 ~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-L~~~~~~~~~~~~LSgG~kqrl~ia~al~ 446 (614)
.++.+||+||++.+++.+||+||+.++.. .....++.+++++++++.++ +. +..++++.+||||||||++|||||+
T Consensus 79 ~~~~i~~v~q~~~l~~~ltv~enl~~~~~-~~~~~~~~~~~~~~~l~~~~~l~--~~~~~~~~~LSgGq~qrv~lAraL~ 155 (240)
T 1ji0_A 79 NRMGIALVPEGRRIFPELTVYENLMMGAY-NRKDKEGIKRDLEWIFSLFPRLK--ERLKQLGGTLSGGEQQMLAIGRALM 155 (240)
T ss_dssp HHTTEEEECSSCCCCTTSBHHHHHHGGGT-TCCCSSHHHHHHHHHHHHCHHHH--TTTTSBSSSSCHHHHHHHHHHHHHT
T ss_pred HhCCEEEEecCCccCCCCcHHHHHHHhhh-cCCCHHHHHHHHHHHHHHcccHh--hHhcCChhhCCHHHHHHHHHHHHHH
Confidence 35569999999999999999999988642 22234455678889999995 86 3789999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 447 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 447 ~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
.+|+++||||||+|||+.+++.+++.|++++ +|+|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 156 ~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 156 SRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence 9999999999999999999999999999864 69999999999999999999999999999999999988753
No 15
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=5.6e-53 Score=431.89 Aligned_cols=218 Identities=22% Similarity=0.375 Sum_probs=198.7
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 368 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~ 368 (614)
++++++|++|.|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. ...+.
T Consensus 10 ~~l~~~~l~~~~~~------~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~ 83 (266)
T 4g1u_C 10 ALLEASHLHYHVQQ------QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKAL 83 (266)
T ss_dssp CEEEEEEEEEEETT------EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHH
T ss_pred ceEEEEeEEEEeCC------eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHH
Confidence 47999999999973 679999999999999999999999999999999999999999999999999865 34456
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhC-
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG- 447 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~- 447 (614)
++.+||+||++.+++.+||+||+.++.... ..++.+++++++++.+++. ++.++++++||||||||++|||||+.
T Consensus 84 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGq~QRv~iAraL~~~ 159 (266)
T 4g1u_C 84 ARTRAVMRQYSELAFPFSVSEVIQMGRAPY--GGSQDRQALQQVMAQTDCL--ALAQRDYRVLSGGEQQRVQLARVLAQL 159 (266)
T ss_dssp HHHEEEECSCCCCCSCCBHHHHHHGGGTTS--CSTTHHHHHHHHHHHTTCS--TTTTSBGGGCCHHHHHHHHHHHHHHHT
T ss_pred hheEEEEecCCccCCCCCHHHHHHhhhhhc--CcHHHHHHHHHHHHHcCCh--hHhcCCcccCCHHHHHHHHHHHHHhcc
Confidence 678999999999988899999999875543 3345567899999999997 48899999999999999999999999
Q ss_pred -----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHH
Q 007178 448 -----NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 517 (614)
Q Consensus 448 -----~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 517 (614)
+|++|||||||+||||.++++++++|++++ + |+|||++|||++++..+|||+++|++|++++.|+++++.
T Consensus 160 ~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 160 WQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp CCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred cccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 999999999999999999999999999863 4 679999999999999999999999999999999998874
No 16
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=3.7e-53 Score=451.72 Aligned_cols=221 Identities=26% Similarity=0.444 Sum_probs=202.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc-----H
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-----M 365 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~-----~ 365 (614)
+++++|++|+|++ +.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... .
T Consensus 3 ~l~~~~l~~~y~~------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~ 76 (372)
T 1g29_1 3 GVRLVDVWKVFGE------VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFV 76 (372)
T ss_dssp EEEEEEEEEEETT------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEEC
T ss_pred EEEEEeEEEEECC------EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccC
Confidence 5899999999963 5799999999999999999999999999999999999999999999999987531 1
Q ss_pred HHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 007178 366 DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 445 (614)
Q Consensus 366 ~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al 445 (614)
...+++|||+||++.+|+.+||+||+.|+.+.++.+.++.+++++++++.++|. ++.++++++||||||||++|||||
T Consensus 77 ~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~--~~~~r~~~~LSGGq~QRvalArAL 154 (372)
T 1g29_1 77 PPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLT--ELLNRKPRELSGGQRQRVALGRAI 154 (372)
T ss_dssp CGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCG--GGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred CHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc--hHhcCCcccCCHHHHHHHHHHHHH
Confidence 223578999999999999999999999988777766667778899999999996 488999999999999999999999
Q ss_pred hCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 446 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 446 ~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
+.+|++|||||||+|||+..++++++.|+++ ++ |+|+|++|||++++..+|||+++|++|+++..|+++++.++
T Consensus 155 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 230 (372)
T 1g29_1 155 VRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230 (372)
T ss_dssp HTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred hcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999986 33 99999999999999999999999999999999999998654
No 17
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.4e-53 Score=452.31 Aligned_cols=221 Identities=27% Similarity=0.506 Sum_probs=202.6
Q ss_pred eEEEEeEEEEcCCCCCCCccc--eeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc----
Q 007178 291 AIISDNLRKIYPGRDGNPEKV--AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD---- 364 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~--~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~---- 364 (614)
+++++|++|+|++ +. +|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...
T Consensus 3 ~l~i~~l~~~y~~------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~ 76 (353)
T 1oxx_K 3 RIIVKNVSKVFKK------GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76 (353)
T ss_dssp CEEEEEEEEEEGG------GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEES
T ss_pred EEEEEeEEEEECC------EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECccccccc
Confidence 5899999999963 56 99999999999999999999999999999999999999999999999988531
Q ss_pred HHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 007178 365 MDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 444 (614)
Q Consensus 365 ~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~a 444 (614)
....++++||+||++.+|+.+||+||+.|+.+.++.++++.+++++++++.+||. ++.++++++||||||||++||||
T Consensus 77 ~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~--~~~~~~~~~LSGGq~QRvalAra 154 (353)
T 1oxx_K 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIH--HVLNHFPRELSGAQQQRVALARA 154 (353)
T ss_dssp SCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCG--GGTTSCGGGSCHHHHHHHHHHHH
T ss_pred CChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hHhcCChhhCCHHHHHHHHHHHH
Confidence 2234678999999999999999999999987766666666778899999999996 48899999999999999999999
Q ss_pred HhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 445 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 445 l~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
|+.+|+++||||||+|||+..++++++.|+++ ++ |+|+|++|||++++..+|||+++|++|+++..|+++++.++
T Consensus 155 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~ 231 (353)
T 1oxx_K 155 LVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231 (353)
T ss_dssp HTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999999986 33 99999999999999999999999999999999999998654
No 18
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=3.9e-53 Score=450.97 Aligned_cols=220 Identities=28% Similarity=0.443 Sum_probs=195.4
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhc
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 370 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~ 370 (614)
+++++|++|+|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..... .++
T Consensus 11 ~l~~~~l~~~y~~------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~-~~r 83 (372)
T 1v43_A 11 EVKLENLTKRFGN------FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPP-KDR 83 (372)
T ss_dssp CEEEEEEEEEETT------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG-GGG
T ss_pred eEEEEEEEEEECC------EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCCh-hhC
Confidence 5999999999973 579999999999999999999999999999999999999999999999999864322 357
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCC
Q 007178 371 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 450 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~ 450 (614)
+|||+||++.+|+.+||+||+.|+.+.++.++++.+++++++++.++|. ++.++++++||||||||++|||||+.+|+
T Consensus 84 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~--~~~~r~~~~LSGGq~QRvalArAL~~~P~ 161 (372)
T 1v43_A 84 NISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIE--ELLNRYPAQLSGGQRQRVAVARAIVVEPD 161 (372)
T ss_dssp TEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCG--GGTTSCTTTCCSSCHHHHHHHHHHTTCCS
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh--hHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 8999999999999999999999977666666666778899999999996 48999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 451 VVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 451 vllLDEPtsgLD~~~~~~i~~~l~~~-~~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
+|||||||+|||+..++++++.|+++ ++ |+|+|++|||++++..+||||++|++|+++..|+++++.++
T Consensus 162 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 232 (372)
T 1v43_A 162 VLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 232 (372)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999986 34 89999999999999999999999999999999999998654
No 19
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=5.1e-53 Score=446.54 Aligned_cols=216 Identities=29% Similarity=0.509 Sum_probs=197.8
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhc
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 370 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~ 370 (614)
+++++|++|+|++ + +++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.... ..++
T Consensus 1 ml~~~~l~~~y~~------~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~-~~~r 72 (348)
T 3d31_A 1 MIEIESLSRKWKN------F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLS-PEKH 72 (348)
T ss_dssp CEEEEEEEEECSS------C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSC-HHHH
T ss_pred CEEEEEEEEEECC------E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCc-hhhC
Confidence 4789999999962 5 999999999999999999999999999999999999999999999999986432 3457
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCC
Q 007178 371 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 450 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~ 450 (614)
+|||+||++.+|+.+||+||+.|+.+.++.+.+ ++++++++.++|. ++.++++++||||||||++|||||+.+|+
T Consensus 73 ~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~---~~v~~~l~~~~L~--~~~~~~~~~LSgGq~QRvalAraL~~~P~ 147 (348)
T 3d31_A 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP---KRVLDTARDLKIE--HLLDRNPLTLSGGEQQRVALARALVTNPK 147 (348)
T ss_dssp TCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCH---HHHHHHHHHTTCT--TTTTSCGGGSCHHHHHHHHHHHHTTSCCS
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHHcCCCHH---HHHHHHHHHcCCc--hHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 899999999999999999999998766554432 7789999999997 48999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 451 VVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 451 vllLDEPtsgLD~~~~~~i~~~l~~~-~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
+|||||||+|||+..++++++.|+++ + .|+|||++|||++++..+|||+++|++|+++..|+++++.++
T Consensus 148 lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~ 218 (348)
T 3d31_A 148 ILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218 (348)
T ss_dssp EEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999986 3 499999999999999999999999999999999999998654
No 20
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=4.9e-53 Score=426.00 Aligned_cols=215 Identities=22% Similarity=0.389 Sum_probs=193.6
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhc
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 370 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~ 370 (614)
+++++|++|+|++ +|+|+||++++ |++||+||||||||||+|+|+|+++|++|+|.++|+++... ...++
T Consensus 1 ml~~~~l~~~y~~--------~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~ 70 (240)
T 2onk_A 1 MFLKVRAEKRLGN--------FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPL-PPERR 70 (240)
T ss_dssp CCEEEEEEEEETT--------EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS-CTTTS
T ss_pred CEEEEEEEEEeCC--------EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcC-chhhC
Confidence 3789999999962 59999999999 99999999999999999999999999999999999998542 23467
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCC
Q 007178 371 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 450 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~ 450 (614)
++||+||++.+++.+||+||+.++...++. ...+++++++++.+||. +..++++++||||||||++|||||+.+|+
T Consensus 71 ~i~~v~q~~~l~~~ltv~enl~~~~~~~~~--~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGqkqRv~lAral~~~p~ 146 (240)
T 2onk_A 71 GIGFVPQDYALFPHLSVYRNIAYGLRNVER--VERDRRVREMAEKLGIA--HLLDRKPARLSGGERQRVALARALVIQPR 146 (240)
T ss_dssp CCBCCCSSCCCCTTSCHHHHHHTTCTTSCH--HHHHHHHHHHHHTTTCT--TTTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred cEEEEcCCCccCCCCcHHHHHHHHHHHcCC--chHHHHHHHHHHHcCCH--HHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 899999999999999999999986544331 22357789999999997 47899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 451 VVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 451 vllLDEPtsgLD~~~~~~i~~~l~~~-~~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
++||||||+|||+.+++.+++.|+++ ++ |+|||++|||++++..+|||+++|++|++++.|+++++.++
T Consensus 147 lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 217 (240)
T 2onk_A 147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999986 33 99999999999999999999999999999999999998764
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=5.1e-52 Score=425.06 Aligned_cols=225 Identities=25% Similarity=0.383 Sum_probs=197.6
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhc
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 370 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~ 370 (614)
+++++|++|+|+... ...+.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ..++
T Consensus 2 ~l~~~~l~~~y~~~~-~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~--~~~~ 78 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGT-PLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY--EIRR 78 (266)
T ss_dssp CEEEEEEEEEESTTS-TTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH--HHGG
T ss_pred EEEEEEEEEEecCCC-ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH--Hhhh
Confidence 589999999996210 0015699999999999999999999999999999999999999999999999998542 5677
Q ss_pred ceEEEcCCC-CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCC--CCCcccccCCCCChhHHHHHHHHHHHhC
Q 007178 371 SMGVCPQED-LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLF--HGGVADKQAGKYSGGMKRRLSVAISLIG 447 (614)
Q Consensus 371 ~ig~~~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~~~LSgG~kqrl~ia~al~~ 447 (614)
.+||+||++ .+++.+||+||+.++.... .+.++.+++++++++.+||. + ..++++.+||||||||++|||||+.
T Consensus 79 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~--~~~~~~~~LSgGq~qRv~lAraL~~ 155 (266)
T 2yz2_A 79 NIGIAFQYPEDQFFAERVFDEVAFAVKNF-YPDRDPVPLVKKAMEFVGLDFDS--FKDRVPFFLSGGEKRRVAIASVIVH 155 (266)
T ss_dssp GEEEECSSGGGGCCCSSHHHHHHHTTTTT-CTTSCSHHHHHHHHHHTTCCHHH--HTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred hEEEEeccchhhcCCCcHHHHHHHHHHhc-CCHHHHHHHHHHHHHHcCcCCcc--cccCChhhCCHHHHHHHHHHHHHHc
Confidence 899999995 5666789999999865432 33334456789999999996 4 7899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHhcC
Q 007178 448 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG 521 (614)
Q Consensus 448 ~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~ 521 (614)
+|+++||||||+|||+.+++.+++.|+++ ++|+|||++||+++++..+|||+++|++|+++..|+++++.+...
T Consensus 156 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 230 (266)
T 2yz2_A 156 EPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYD 230 (266)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHHSC
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCcc
Confidence 99999999999999999999999999986 469999999999999999999999999999999999999877643
No 22
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=7.7e-52 Score=426.16 Aligned_cols=221 Identities=24% Similarity=0.331 Sum_probs=193.2
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCC--C-cH
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR--T-DM 365 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~--~-~~ 365 (614)
.++++++||+|+|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++. . ..
T Consensus 19 ~~~l~~~~l~~~y~~------~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~ 92 (279)
T 2ihy_A 19 HMLIQLDQIGRMKQG------KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSA 92 (279)
T ss_dssp CEEEEEEEEEEEETT------EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCH
T ss_pred CceEEEEeEEEEECC------EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCH
Confidence 347999999999973 57999999999999999999999999999999999999999999999999885 3 34
Q ss_pred HHhhcceEEEcCCCCC--CCCCCHHHHHHHHhh----hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHH
Q 007178 366 DRIYTSMGVCPQEDLL--WETLTGREHLLFYGR----LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRL 439 (614)
Q Consensus 366 ~~~~~~ig~~~Q~~~l--~~~lTv~e~l~~~~~----~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl 439 (614)
...+++|||+||++.+ .+.+||+||+.+... +.+...++.+++++++++.+||. +..++++.+||||||||+
T Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgGqkqRv 170 (279)
T 2ihy_A 93 ETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMS--AKAQQYIGYLSTGEKQRV 170 (279)
T ss_dssp HHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCG--GGTTSBGGGSCHHHHHHH
T ss_pred HHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCCh--hHhcCChhhCCHHHHHHH
Confidence 4567889999999754 335799999987432 11222344567889999999996 478999999999999999
Q ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceE--EEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHH
Q 007178 440 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAI--ILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 516 (614)
Q Consensus 440 ~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tI--il~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l 516 (614)
+|||||+.+|++|||||||+|||+.+++.++++|++++ +|+|| |++|||++++..+|||+++|++|++++.|+++++
T Consensus 171 ~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 171 MIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDI 250 (279)
T ss_dssp HHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHH
T ss_pred HHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999864 48999 9999999999999999999999999999999877
Q ss_pred H
Q 007178 517 K 517 (614)
Q Consensus 517 ~ 517 (614)
.
T Consensus 251 ~ 251 (279)
T 2ihy_A 251 L 251 (279)
T ss_dssp C
T ss_pred h
Confidence 4
No 23
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=9.7e-51 Score=415.69 Aligned_cols=224 Identities=21% Similarity=0.299 Sum_probs=193.6
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCC--CCCCccEEEEcCeeCCCc-H
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI--TRTTSGTAYVQGLDIRTD-M 365 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl--~~p~sG~i~i~G~~i~~~-~ 365 (614)
.++++++||+|+|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+ .+|++|+|.++|+++... .
T Consensus 18 ~~~l~~~~l~~~y~~------~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~ 91 (267)
T 2zu0_C 18 SHMLSIKDLHVSVED------KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSP 91 (267)
T ss_dssp --CEEEEEEEEEETT------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCH
T ss_pred CceEEEEeEEEEECC------EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCH
Confidence 347999999999963 5799999999999999999999999999999999999 479999999999998542 2
Q ss_pred HH-hhcceEEEcCCCCCCCCCCHHHHHHHHhh-h---cC---CCchhHHHHHHHHHHHcCCCCCCcccccCC-CCChhHH
Q 007178 366 DR-IYTSMGVCPQEDLLWETLTGREHLLFYGR-L---KN---LKGPALTQAVEESLKSVNLFHGGVADKQAG-KYSGGMK 436 (614)
Q Consensus 366 ~~-~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~-~---~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~-~LSgG~k 436 (614)
.. .++.+||+||++.+++.+|+.||+.+... . .+ .+.++.+++++++++.+||.+ ...++++. +||||||
T Consensus 92 ~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~~~LSgGq~ 170 (267)
T 2zu0_C 92 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPE-DLLTRSVNVGFSGGEK 170 (267)
T ss_dssp HHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCT-TTTTSBTTTTCCHHHH
T ss_pred HHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCCh-hHhcCCcccCCCHHHH
Confidence 22 24569999999999999999999987531 1 12 223445678899999999962 36788887 5999999
Q ss_pred HHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhh-CCEEEEEeCCEEEEEcCHH
Q 007178 437 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEAL-CDRLGIFVDGSLQCIGNPK 514 (614)
Q Consensus 437 qrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l-~dri~il~~G~l~~~g~~~ 514 (614)
||++|||||+.+|++|||||||+|||+.+++.++++|++++ +|+|||++|||+++++.+ |||+++|++|++++.|+++
T Consensus 171 QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 250 (267)
T 2zu0_C 171 KRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT 250 (267)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTT
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999999874 589999999999999886 9999999999999999998
Q ss_pred HHHHh
Q 007178 515 ELKAR 519 (614)
Q Consensus 515 ~l~~~ 519 (614)
++...
T Consensus 251 ~~~~~ 255 (267)
T 2zu0_C 251 LVKQL 255 (267)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 87543
No 24
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=7.7e-51 Score=412.66 Aligned_cols=218 Identities=21% Similarity=0.296 Sum_probs=187.8
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCC--CCCCccEEEEcCeeCCCc-H-H
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI--TRTTSGTAYVQGLDIRTD-M-D 366 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl--~~p~sG~i~i~G~~i~~~-~-~ 366 (614)
+++++|++|+|++ +.+|+|+||++++||++||+||||||||||+|+|+|+ ++|++|+|.++|+++... . .
T Consensus 3 ~l~~~~l~~~y~~------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~ 76 (250)
T 2d2e_A 3 QLEIRDLWASIDG------ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDE 76 (250)
T ss_dssp EEEEEEEEEEETT------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHH
T ss_pred eEEEEeEEEEECC------EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHH
Confidence 6899999999973 5799999999999999999999999999999999999 899999999999998642 2 2
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhh-hcC--CCchhHHHHHHHHHHHcCCCCCCcccccCCC-CChhHHHHHHHH
Q 007178 367 RIYTSMGVCPQEDLLWETLTGREHLLFYGR-LKN--LKGPALTQAVEESLKSVNLFHGGVADKQAGK-YSGGMKRRLSVA 442 (614)
Q Consensus 367 ~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~-~~~--~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~-LSgG~kqrl~ia 442 (614)
..++.+||+||++.+++.+||+||+.+... ..+ ...++..++++++++.+|+.. +..++++++ ||||||||++||
T Consensus 77 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~~~LSgGqkQrv~iA 155 (250)
T 2d2e_A 77 RARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDE-SYLSRYLNEGFSGGEKKRNEIL 155 (250)
T ss_dssp HHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCG-GGGGSBTTCC----HHHHHHHH
T ss_pred HHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCCh-hHhcCCcccCCCHHHHHHHHHH
Confidence 234569999999999999999999988653 222 122344577899999999942 478999999 999999999999
Q ss_pred HHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhh-CCEEEEEeCCEEEEEcCHHH
Q 007178 443 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEAL-CDRLGIFVDGSLQCIGNPKE 515 (614)
Q Consensus 443 ~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l-~dri~il~~G~l~~~g~~~~ 515 (614)
|||+.+|+++||||||+|||+.+++.++++|++++ +|+|||++|||++++..+ |||+++|++|++++.|+++.
T Consensus 156 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 156 QLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp HHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred HHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 99999999999999999999999999999999874 589999999999999988 59999999999999999874
No 25
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.9e-50 Score=414.26 Aligned_cols=221 Identities=20% Similarity=0.360 Sum_probs=191.0
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 368 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~ 368 (614)
.+|+++||+++|++.. ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. .....
T Consensus 15 ~~l~~~~l~~~y~~~~---~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~ 91 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHP---NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYL 91 (271)
T ss_dssp CCEEEEEEEECCTTCT---TSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred ceEEEEEEEEEeCCCC---CceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHH
Confidence 4699999999997411 2569999999999999999999999999999999999999999999999999854 33456
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc-hhH-----HHHHHHHHHHc--CCCCCCcccccCCCCChhHHHHHH
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG-PAL-----TQAVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLS 440 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~-~~~-----~~~~~~~l~~~--~L~~~~~~~~~~~~LSgG~kqrl~ 440 (614)
+++|||+||++.+++ .||+||+.++.... .. ++. ...++++++.+ |+. ...++++.+||||||||++
T Consensus 92 ~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~gl~--~~~~~~~~~LSgGq~QRv~ 166 (271)
T 2ixe_A 92 HTQVAAVGQEPLLFG-RSFRENIAYGLTRT--PTMEEITAVAMESGAHDFISGFPQGYD--TEVGETGNQLSGGQRQAVA 166 (271)
T ss_dssp HHHEEEECSSCCCCS-SBHHHHHHTTCSSC--CCHHHHHHHHHHHTCHHHHHHSTTGGG--SBCCGGGTTSCHHHHHHHH
T ss_pred hccEEEEecCCcccc-ccHHHHHhhhcccC--ChHHHHHHHHHHHhHHHHHHhhhcchh--hhhcCCcCCCCHHHHHHHH
Confidence 678999999999987 59999998754221 11 111 12356678887 675 4678999999999999999
Q ss_pred HHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 441 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 441 ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~--~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
|||||+.+|++|||||||+|||+.+++.++++|+++. +|+|||++||++++++. |||+++|++|++++.|+++++.+
T Consensus 167 lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 167 LARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSVCEQGTHLQLME 245 (271)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999864 38999999999999875 99999999999999999999876
Q ss_pred h
Q 007178 519 R 519 (614)
Q Consensus 519 ~ 519 (614)
.
T Consensus 246 ~ 246 (271)
T 2ixe_A 246 R 246 (271)
T ss_dssp H
T ss_pred C
Confidence 5
No 26
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=3e-50 Score=408.79 Aligned_cols=207 Identities=23% Similarity=0.368 Sum_probs=186.3
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhc
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 370 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~ 370 (614)
+++++|++|+|++ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|. .++
T Consensus 4 ~l~i~~l~~~y~~-----~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~------------~~~ 66 (253)
T 2nq2_C 4 ALSVENLGFYYQA-----ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE------------VYQ 66 (253)
T ss_dssp EEEEEEEEEEETT-----TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE------------ECS
T ss_pred eEEEeeEEEEeCC-----CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE------------Eec
Confidence 6999999999972 14699999999999999999999999999999999999999999998 246
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhc-C---CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHh
Q 007178 371 SMGVCPQEDLLWETLTGREHLLFYGRLK-N---LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 446 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~-~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~ 446 (614)
.+||+||++.+++.+||+||+.++.... + ...++.+++++++++.+||. +..++++.+||||||||++|||||+
T Consensus 67 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGq~qrv~lAraL~ 144 (253)
T 2nq2_C 67 SIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLT--HLAKREFTSLSGGQRQLILIARAIA 144 (253)
T ss_dssp CEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCG--GGTTSBGGGSCHHHHHHHHHHHHHH
T ss_pred cEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCCh--HHhcCChhhCCHHHHHHHHHHHHHH
Confidence 7999999999999999999999864322 2 12344567889999999996 4789999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHH
Q 007178 447 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 517 (614)
Q Consensus 447 ~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~-g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 517 (614)
.+|+++||||||+|||+.+++.+++.|+++ ++ |+|||++|||++++..+|||+++|++|+ ++.|+++++.
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 145 SECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp TTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 999999999999999999999999999986 45 8999999999999999999999999999 9999988763
No 27
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.6e-50 Score=409.60 Aligned_cols=218 Identities=23% Similarity=0.435 Sum_probs=187.6
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 368 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~ 368 (614)
..|+++||+|+|++. ++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. .....
T Consensus 6 ~~~~~~~l~~~y~~~----~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~ 81 (247)
T 2ff7_A 6 HDITFRNIRFRYKPD----SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWL 81 (247)
T ss_dssp EEEEEEEEEEESSTT----SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHH
T ss_pred CceeEEEEEEEeCCC----CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHH
Confidence 469999999999321 2579999999999999999999999999999999999999999999999999864 34456
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 439 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 439 (614)
++.|||+||++.+++ .||+||+.++.. ... +++++++++.+++.+ +...++++.+||||||||+
T Consensus 82 ~~~i~~v~Q~~~l~~-~tv~enl~~~~~--~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv 154 (247)
T 2ff7_A 82 RRQVGVVLQDNVLLN-RSIIDNISLANP--GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRI 154 (247)
T ss_dssp HHHEEEECSSCCCTT-SBHHHHHTTTCT--TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHH
T ss_pred HhcEEEEeCCCcccc-ccHHHHHhccCC--CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHH
Confidence 778999999999987 599999987521 111 245666777777642 0133456789999999999
Q ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 440 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 440 ~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
+|||||+.+|+++||||||+|||+.+++.+++.|+++++|+|||++||++++++. |||+++|++|++++.|+++++.+.
T Consensus 155 ~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 233 (247)
T 2ff7_A 155 AIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKELLSE 233 (247)
T ss_dssp HHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTT-SSEEEEEETTEEEEEECHHHHHTS
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999987679999999999999875 999999999999999999998654
No 28
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=5.2e-50 Score=416.78 Aligned_cols=218 Identities=21% Similarity=0.409 Sum_probs=189.5
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 368 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~ 368 (614)
..|+++||+++|++ ++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. ....+
T Consensus 52 ~~i~~~~vs~~y~~-----~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~ 126 (306)
T 3nh6_A 52 GRIEFENVHFSYAD-----GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASL 126 (306)
T ss_dssp CCEEEEEEEEESST-----TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHH
T ss_pred CeEEEEEEEEEcCC-----CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHH
Confidence 35999999999964 3579999999999999999999999999999999999999999999999999975 45667
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 439 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 439 (614)
|++|||+||++.+|+. ||+||+.++.... . .++++++++.+++.+ +...++++.+||||||||+
T Consensus 127 r~~i~~v~Q~~~lf~~-Tv~eNi~~~~~~~--~----~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRv 199 (306)
T 3nh6_A 127 RSHIGVVPQDTVLFND-TIADNIRYGRVTA--G----NDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRV 199 (306)
T ss_dssp HHTEEEECSSCCCCSE-EHHHHHHTTSTTC--C----HHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHH
T ss_pred hcceEEEecCCccCcc-cHHHHHHhhcccC--C----HHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHH
Confidence 8899999999999964 9999998753221 1 233444555554421 1245667789999999999
Q ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 440 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 440 ~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
+|||||+.+|++|||||||+|||+.+++.+++.|+++.+++|+|++||+++.+.. ||||++|++|++++.|+++++.++
T Consensus 200 aiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~~G~~~el~~~ 278 (306)
T 3nh6_A 200 AIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-ADQILVIKDGCIVERGRHEALLSR 278 (306)
T ss_dssp HHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999999999998778999999999999987 999999999999999999999876
Q ss_pred c
Q 007178 520 Y 520 (614)
Q Consensus 520 ~ 520 (614)
.
T Consensus 279 ~ 279 (306)
T 3nh6_A 279 G 279 (306)
T ss_dssp T
T ss_pred C
Confidence 3
No 29
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=7e-50 Score=404.97 Aligned_cols=210 Identities=20% Similarity=0.304 Sum_probs=189.9
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 368 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~ 368 (614)
.+++++|++|+ .+|+|+||++++||+++|+||||||||||+|+|+|+++|+ |+|.++|+++.. .....
T Consensus 3 ~~l~~~~l~~~----------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~ 71 (249)
T 2qi9_C 3 IVMQLQDVAES----------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKL 71 (249)
T ss_dssp EEEEEEEEEET----------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHH
T ss_pred cEEEEEceEEE----------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHH
Confidence 36899999986 2899999999999999999999999999999999999999 999999999854 34456
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCC
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 448 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~ 448 (614)
++++||+||++.+++.+||+||+.++. ..+. . +++++++++.+||. ++.++++.+||||||||++|||||+.+
T Consensus 72 ~~~i~~v~q~~~~~~~~tv~e~l~~~~-~~~~---~-~~~~~~~l~~~~l~--~~~~~~~~~LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 72 ALHRAYLSQQQTPPFATPVWHYLTLHQ-HDKT---R-TELLNDVAGALALD--DKLGRSTNQLSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp HHHEEEECSCCCCCTTCBHHHHHHTTC-SSTT---C-HHHHHHHHHHTTCG--GGTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred hceEEEECCCCccCCCCcHHHHHHHhh-ccCC---c-HHHHHHHHHHcCCh--hHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 678999999999999999999998752 2121 1 56788999999996 478999999999999999999999999
Q ss_pred CC-------EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHH
Q 007178 449 PK-------VVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 517 (614)
Q Consensus 449 p~-------vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 517 (614)
|+ ++||||||+|||+.+++.+++.|+++ ++|+|||++|||+++++.+|||+++|++|++++.|+++++.
T Consensus 145 p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 221 (249)
T 2qi9_C 145 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221 (249)
T ss_dssp CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHS
T ss_pred CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99 99999999999999999999999986 46999999999999999999999999999999999998874
No 30
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=8.4e-50 Score=407.42 Aligned_cols=214 Identities=25% Similarity=0.372 Sum_probs=190.1
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhc
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 370 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~ 370 (614)
+++++|++|+|++.. .++.+|+|+||+++ ||+++|+||||||||||+|+|+|++ |++|+|.++|+++... .. ++
T Consensus 1 ml~~~~l~~~y~~~~--~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~-~~-~~ 74 (263)
T 2pjz_A 1 MIQLKNVGITLSGKG--YERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI-RN-YI 74 (263)
T ss_dssp CEEEEEEEEEEEEET--TEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC-SC-CT
T ss_pred CEEEEEEEEEeCCCC--ccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch-HH-hh
Confidence 478999999996310 01579999999999 9999999999999999999999999 9999999999988543 33 67
Q ss_pred ceE-EEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCC
Q 007178 371 SMG-VCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 449 (614)
Q Consensus 371 ~ig-~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p 449 (614)
++| |+||++.+ .+||+||+.++..+.. ..+++++++++.++|.+ +..++++.+||||||||++|||||+.+|
T Consensus 75 ~i~~~v~Q~~~l--~~tv~enl~~~~~~~~----~~~~~~~~~l~~~gl~~-~~~~~~~~~LSgGqkqRv~lAraL~~~p 147 (263)
T 2pjz_A 75 RYSTNLPEAYEI--GVTVNDIVYLYEELKG----LDRDLFLEMLKALKLGE-EILRRKLYKLSAGQSVLVRTSLALASQP 147 (263)
T ss_dssp TEEECCGGGSCT--TSBHHHHHHHHHHHTC----CCHHHHHHHHHHTTCCG-GGGGSBGGGSCHHHHHHHHHHHHHHTCC
T ss_pred heEEEeCCCCcc--CCcHHHHHHHhhhhcc----hHHHHHHHHHHHcCCCh-hHhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 899 99999887 7899999998765432 12457889999999961 3789999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCC-EEEEEeCCEEEEEcCHHHHHHh
Q 007178 450 KVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCD-RLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 450 ~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~d-ri~il~~G~l~~~g~~~~l~~~ 519 (614)
+++||||||+|||+.+++.+++.|+++++ |||++|||++++..+|| |+++|++|++++.|+++++.+.
T Consensus 148 ~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 148 EIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred CEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 99999999999999999999999998765 99999999999999999 9999999999999999998754
No 31
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=2.8e-50 Score=406.90 Aligned_cols=215 Identities=20% Similarity=0.357 Sum_probs=186.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhh
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 369 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~ 369 (614)
+++++|++|+|++ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. .....+
T Consensus 1 ml~~~~l~~~y~~-----~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 75 (243)
T 1mv5_A 1 MLSARHVDFAYDD-----SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWR 75 (243)
T ss_dssp CEEEEEEEECSSS-----SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCT
T ss_pred CEEEEEEEEEeCC-----CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHH
Confidence 4789999999942 2569999999999999999999999999999999999999999999999999854 223456
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcc-----------cccCCCCChhHHHH
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVA-----------DKQAGKYSGGMKRR 438 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~~~LSgG~kqr 438 (614)
+.+||+||++.+++. ||+||+.++.. ... .+++++++++.+++.+ .. ++++.+||||||||
T Consensus 76 ~~i~~v~q~~~l~~~-tv~enl~~~~~-~~~----~~~~~~~~l~~~~l~~--~~~~~~~gl~~~~~~~~~~LSgGq~qr 147 (243)
T 1mv5_A 76 SQIGFVSQDSAIMAG-TIRENLTYGLE-GDY----TDEDLWQVLDLAFARS--FVENMPDQLNTEVGERGVKISGGQRQR 147 (243)
T ss_dssp TTCCEECCSSCCCCE-EHHHHTTSCTT-SCS----CHHHHHHHHHHHTCTT--TTTSSTTGGGCEESTTSBCCCHHHHHH
T ss_pred hhEEEEcCCCccccc-cHHHHHhhhcc-CCC----CHHHHHHHHHHhChHH--HHHhCccchhchhccCcCcCCHHHHHH
Confidence 789999999999884 99999987522 111 1345778888888853 33 34568999999999
Q ss_pred HHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 439 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 439 l~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
++|||||+.+|+++||||||+|||+.+++.+++.|+++++|+|||++||++++++ .|||+++|++|++++.|+++++.+
T Consensus 148 v~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 148 LAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp HHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEEETTEECCCSCHHHHHH
T ss_pred HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHH-hCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999998767999999999999986 599999999999999999999865
Q ss_pred h
Q 007178 519 R 519 (614)
Q Consensus 519 ~ 519 (614)
.
T Consensus 227 ~ 227 (243)
T 1mv5_A 227 T 227 (243)
T ss_dssp H
T ss_pred c
Confidence 4
No 32
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=5.5e-50 Score=396.71 Aligned_cols=202 Identities=18% Similarity=0.332 Sum_probs=180.3
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHh
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 368 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~ 368 (614)
..+|+++|++|+|+ + .+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. ..
T Consensus 8 ~~~l~~~~ls~~y~------~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~----~~ 76 (214)
T 1sgw_A 8 GSKLEIRDLSVGYD------K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT----KV 76 (214)
T ss_dssp -CEEEEEEEEEESS------S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG----GG
T ss_pred CceEEEEEEEEEeC------C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh----hh
Confidence 45899999999996 3 6999999999999999999999999999999999999999999999999875 24
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCC
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 448 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~ 448 (614)
++.+||+||++.+++.+||+||+.++...++. ..+ +++++++++.+|+.+ . ++++.+||||||||++|||||+.+
T Consensus 77 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~-~~~~~~~l~~~gl~~--~-~~~~~~LSgGqkqrv~laraL~~~ 151 (214)
T 1sgw_A 77 KGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KVN-KNEIMDALESVEVLD--L-KKKLGELSQGTIRRVQLASTLLVN 151 (214)
T ss_dssp GGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CCC-HHHHHHHHHHTTCCC--T-TSBGGGSCHHHHHHHHHHHHTTSC
T ss_pred cCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-chH-HHHHHHHHHHcCCCc--C-CCChhhCCHHHHHHHHHHHHHHhC
Confidence 67899999999999999999999987665443 233 567899999999973 6 899999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEEeCCEE
Q 007178 449 PKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSL 507 (614)
Q Consensus 449 p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il~~G~l 507 (614)
|+++||||||+|||+.+++.+++.|++++ +|+|||++||++++++.+|||++.+ +|+|
T Consensus 152 p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 152 AEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp CSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 99999999999999999999999999864 5899999999999999999998643 4554
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=8.7e-49 Score=399.71 Aligned_cols=218 Identities=22% Similarity=0.433 Sum_probs=186.5
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 368 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~ 368 (614)
.+++++|++++|++.. .+.+|+|+||+|++||+++|+||||||||||+|+|+|+++| +|+|.++|+++.. .....
T Consensus 16 ~~l~i~~l~~~y~~~~---~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~ 91 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQT---NHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSI 91 (260)
T ss_dssp CCEEEEEEEECCTTCC---SSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHH
T ss_pred CeEEEEEEEEEeCCCC---cCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHH
Confidence 3699999999997421 24699999999999999999999999999999999999987 8999999999854 34456
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 439 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 439 (614)
++.|||+||++.+++ .||+||+.+.. . ... ++++.++++.+++.+ +...++++.+||||||||+
T Consensus 92 ~~~i~~v~Q~~~l~~-~tv~enl~~~~-~-~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv 164 (260)
T 2ghi_A 92 RSIIGIVPQDTILFN-ETIKYNILYGK-L-DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRI 164 (260)
T ss_dssp HTTEEEECSSCCCCS-EEHHHHHHTTC-T-TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHH
T ss_pred hccEEEEcCCCcccc-cCHHHHHhccC-C-CCC----HHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHH
Confidence 788999999999987 59999998742 1 111 245566777777631 0013467889999999999
Q ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 440 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 440 ~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
+|||||+.+|+++||||||+|||+.+++.+++.|+++++|+|||++||++++++ .|||+++|++|++++.|+++++.+.
T Consensus 165 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 243 (260)
T 2ghi_A 165 AIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS-SAESIILLNKGKIVEKGTHKDLLKL 243 (260)
T ss_dssp HHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST-TCSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-hCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999999999999999999999998877899999999999986 4999999999999999999998764
No 34
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1e-48 Score=419.45 Aligned_cols=214 Identities=23% Similarity=0.385 Sum_probs=191.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 368 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~ 368 (614)
..|+++||+|+|++. ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++.. .....
T Consensus 18 ~~i~~~~l~~~y~~~----~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~ 92 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEG----GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQW 92 (390)
T ss_dssp CCEEEEEEEEESSSS----SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHH
T ss_pred CeEEEEEEEEEecCC----CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHH
Confidence 469999999999531 3679999999999999999999999999999999999998 99999999999865 44556
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCC-----------CChhHHH
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGK-----------YSGGMKR 437 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~-----------LSgG~kq 437 (614)
++.+||+||++.+|+ +||+||+.++.. ..+++++++++.++|. ++.++++.+ |||||||
T Consensus 93 rr~ig~v~Q~~~lf~-~tv~enl~~~~~-------~~~~~v~~~l~~~~L~--~~~~~~p~~l~~~i~~~g~~LSGGqrQ 162 (390)
T 3gd7_A 93 RKAFGVIPQKVFIFS-GTFRKNLDPNAA-------HSDQEIWKVADEVGLR--SVIEQFPGKLDFVLVDGGCVLSHGHKQ 162 (390)
T ss_dssp HHTEEEESCCCCCCS-EEHHHHHCTTCC-------SCHHHHHHHHHHTTCH--HHHTTSTTGGGCEECTTTTTSCHHHHH
T ss_pred hCCEEEEcCCcccCc-cCHHHHhhhccc-------cCHHHHHHHHHHhCCH--HHHhhcccccccccccccccCCHHHHH
Confidence 788999999999998 699999964321 1245688899999996 478888888 9999999
Q ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHH
Q 007178 438 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 517 (614)
Q Consensus 438 rl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 517 (614)
|++|||||+.+|++|||||||+|||+..++++++.|++..+++|+|++||+++.+ ..||||++|++|++++.|+++++.
T Consensus 163 RvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~-~~aDri~vl~~G~i~~~g~~~el~ 241 (390)
T 3gd7_A 163 LMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAM-LECDQFLVIEENKVRQYDSILELY 241 (390)
T ss_dssp HHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGG-TTCSEEEEEETTEEEEESSHHHHH
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999999877789999999998755 569999999999999999999997
Q ss_pred Hh
Q 007178 518 AR 519 (614)
Q Consensus 518 ~~ 519 (614)
++
T Consensus 242 ~~ 243 (390)
T 3gd7_A 242 HY 243 (390)
T ss_dssp HC
T ss_pred hC
Confidence 65
No 35
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=4.3e-48 Score=387.42 Aligned_cols=206 Identities=20% Similarity=0.345 Sum_probs=173.4
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHh
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 368 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~ 368 (614)
..+++++|++|+|++. ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|
T Consensus 4 ~~~l~~~~l~~~y~~~----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g---------- 69 (229)
T 2pze_A 4 TTEVVMENVTAFWEEG----GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---------- 69 (229)
T ss_dssp CEEEEEEEEEECSSTT----SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS----------
T ss_pred cceEEEEEEEEEeCCC----CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC----------
Confidence 3479999999999631 35799999999999999999999999999999999999999999999998
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 439 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 439 (614)
++||+||++.+++. ||+||+.++... .. .+.++.++.+++.+ ....++++.+||||||||+
T Consensus 70 --~i~~v~q~~~~~~~-tv~enl~~~~~~---~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv 139 (229)
T 2pze_A 70 --RISFCSQFSWIMPG-TIKENIIFGVSY---DE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARI 139 (229)
T ss_dssp --CEEEECSSCCCCSB-CHHHHHHTTSCC---CH----HHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHH
T ss_pred --EEEEEecCCcccCC-CHHHHhhccCCc---Ch----HHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHH
Confidence 38999999999886 999999875321 11 12233344444321 0123456789999999999
Q ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHH-HHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 440 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVV-KRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 440 ~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l-~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
+|||||+.+|+++||||||+|||+.+++.+++.+ ++..+|+|||++||+++++.. |||+++|++|++++.|+++++.+
T Consensus 140 ~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~~~~ 218 (229)
T 2pze_A 140 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK-ADKILILHEGSSYFYGTFSELQN 218 (229)
T ss_dssp HHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHH-CSEEEEEETTEEEEEECHHHHHT
T ss_pred HHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHh-CCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999974 555568999999999999874 99999999999999999999865
Q ss_pred h
Q 007178 519 R 519 (614)
Q Consensus 519 ~ 519 (614)
+
T Consensus 219 ~ 219 (229)
T 2pze_A 219 L 219 (229)
T ss_dssp C
T ss_pred c
Confidence 4
No 36
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.9e-47 Score=384.73 Aligned_cols=207 Identities=24% Similarity=0.417 Sum_probs=173.5
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhc
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 370 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~ 370 (614)
+++++|++|+|++. ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|
T Consensus 3 ~l~~~~l~~~y~~~----~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g------------ 66 (237)
T 2cbz_A 3 SITVRNATFTWARS----DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG------------ 66 (237)
T ss_dssp CEEEEEEEEESCTT----SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS------------
T ss_pred eEEEEEEEEEeCCC----CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC------------
Confidence 58999999999731 25799999999999999999999999999999999999999999999998
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHH---HHHHcCCCC---CCcccccCCCCChhHHHHHHHHHH
Q 007178 371 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEE---SLKSVNLFH---GGVADKQAGKYSGGMKRRLSVAIS 444 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~---~l~~~~L~~---~~~~~~~~~~LSgG~kqrl~ia~a 444 (614)
.+||+||++.+ +.+||+||+.++... ..+. .+++.+ +.+.+++.+ ....++++.+||||||||++||||
T Consensus 67 ~i~~v~Q~~~~-~~~tv~enl~~~~~~---~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAra 141 (237)
T 2cbz_A 67 SVAYVPQQAWI-QNDSLRENILFGCQL---EEPY-YRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARA 141 (237)
T ss_dssp CEEEECSSCCC-CSEEHHHHHHTTSCC---CTTH-HHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHH
T ss_pred EEEEEcCCCcC-CCcCHHHHhhCcccc---CHHH-HHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 38999999875 478999999875422 1111 122222 222333321 013578899999999999999999
Q ss_pred HhCCCCEEEEeCCCCCCCHHHHHHHHHHHH---HhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 445 LIGNPKVVYMDEPSTGLDPASRNNLWNVVK---RAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 445 l~~~p~vllLDEPtsgLD~~~~~~i~~~l~---~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
|+.+|+++||||||+|||+.+++.+++.+. +.++|+|||++||+++++. .|||+++|++|++++.|+++++.+.
T Consensus 142 L~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~ 218 (237)
T 2cbz_A 142 VYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QVDVIIVMSGGKISEMGSYQELLAR 218 (237)
T ss_dssp HHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GSSEEEEEETTEEEEEECHHHHHHH
T ss_pred HhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hCCEEEEEeCCEEEEeCCHHHHhhc
Confidence 999999999999999999999999999995 3456899999999999986 6999999999999999999998764
No 37
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=4e-46 Score=421.32 Aligned_cols=219 Identities=19% Similarity=0.405 Sum_probs=191.0
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 368 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~ 368 (614)
..++++|++++|++. ++.+|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+|+.. +....
T Consensus 340 ~~i~~~~v~~~y~~~----~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~ 415 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGK----EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNL 415 (582)
T ss_pred CeEEEEEEEEEcCCC----CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHH
Confidence 469999999999742 2569999999999999999999999999999999999999999999999999864 45567
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 439 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 439 (614)
|+++||+||++.+|+. |++||+.++.. .+ ..+++++++++.+++.+ +...+++..+||||||||+
T Consensus 416 ~~~i~~v~Q~~~l~~~-tv~eni~~~~~-~~----~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~ 489 (582)
T 3b5x_A 416 RRHFALVSQNVHLFND-TIANNIAYAAE-GE----YTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRV 489 (582)
T ss_pred hcCeEEEcCCCccccc-cHHHHHhccCC-CC----CCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHH
Confidence 8899999999999985 99999987531 11 12356777888877742 0123445689999999999
Q ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 440 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 440 ~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
+|||||+.+|++++|||||+|||+.+++.+.+.|++..+|+|+|++||+++.++ .||||++|++|++++.|+++++.++
T Consensus 490 ~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b5x_A 490 AIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QADEILVVDEGEIIERGRHADLLAQ 568 (582)
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999999999877999999999999987 6999999999999999999999764
No 38
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=2.8e-46 Score=422.20 Aligned_cols=218 Identities=24% Similarity=0.419 Sum_probs=189.6
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 368 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~ 368 (614)
..++++|++++|++. ++.+|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+|+.. +.+..
T Consensus 338 ~~i~~~~v~~~y~~~----~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~ 413 (578)
T 4a82_A 338 GRIDIDHVSFQYNDN----EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSL 413 (578)
T ss_dssp CCEEEEEEEECSCSS----SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHH
T ss_pred CeEEEEEEEEEcCCC----CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHH
Confidence 469999999999742 3579999999999999999999999999999999999999999999999999965 45667
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 439 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 439 (614)
|+++||+||++.+|+. |++||+.++.. . ..++++.++++..++.+ +...+++..+||||||||+
T Consensus 414 r~~i~~v~Q~~~l~~~-tv~eni~~~~~--~----~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv 486 (578)
T 4a82_A 414 RNQIGLVQQDNILFSD-TVKENILLGRP--T----ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRL 486 (578)
T ss_dssp HHTEEEECSSCCCCSS-BHHHHHGGGCS--S----CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHH
T ss_pred hhheEEEeCCCccCcc-cHHHHHhcCCC--C----CCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHH
Confidence 8899999999999987 99999987521 1 11244556666665531 1233455679999999999
Q ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 440 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 440 ~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
+|||||+.+|+++||||||+|||+.+++.+.+.+++.++|+|+|++||+++++.. ||||++|++|++++.|+++++.++
T Consensus 487 ~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~el~~~ 565 (578)
T 4a82_A 487 SIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH-ADKIVVIENGHIVETGTHRELIAK 565 (578)
T ss_dssp HHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT-CSEEEEEETTEEEEEECHHHHHHT
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999988889999999999999875 999999999999999999999775
No 39
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=4.2e-46 Score=422.20 Aligned_cols=220 Identities=24% Similarity=0.455 Sum_probs=187.5
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhhc
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 370 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~~ 370 (614)
|+++|++++|+++. ++.+|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. +....|+
T Consensus 342 i~~~~v~~~y~~~~---~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~ 418 (595)
T 2yl4_A 342 LEFKNVHFAYPARP---EVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRS 418 (595)
T ss_dssp EEEEEEEEECSSCT---TSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHH
T ss_pred EEEEEEEEEeCCCC---CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHh
Confidence 99999999997421 2469999999999999999999999999999999999999999999999999965 4556788
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHHH
Q 007178 371 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLSV 441 (614)
Q Consensus 371 ~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~i 441 (614)
++||+||++.+|+. |++||+.++.... .+..+++++++++.+++.+ +...+++..+||||||||++|
T Consensus 419 ~i~~v~Q~~~l~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~i 494 (595)
T 2yl4_A 419 KIGTVSQEPILFSC-SIAENIAYGADDP---SSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAI 494 (595)
T ss_dssp SEEEECSSCCCCSS-BHHHHHHTTSSST---TTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHH
T ss_pred ceEEEccCCcccCC-CHHHHHhhcCCCc---cccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHH
Confidence 99999999999985 9999998753211 0122456788888887631 012234458999999999999
Q ss_pred HHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 442 AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 442 a~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
||||+.+|+++||||||+|||+.+++.+++.|++..+|+|+|++||++++++ .||||++|++|++++.|+++++.++
T Consensus 495 Aral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 571 (595)
T 2yl4_A 495 ARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIK-NANMVAVLDQGKITEYGKHEELLSK 571 (595)
T ss_dssp HHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHH-HSSEEEEEETTEEEEEECSCC----
T ss_pred HHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999877999999999999987 4999999999999999999998764
No 40
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=4.5e-46 Score=420.91 Aligned_cols=220 Identities=21% Similarity=0.403 Sum_probs=191.6
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 368 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~ 368 (614)
..++++|++++|++. ++.+|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. +....
T Consensus 340 ~~i~~~~v~~~y~~~----~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~ 415 (582)
T 3b60_A 340 GDLEFRNVTFTYPGR----EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASL 415 (582)
T ss_dssp CCEEEEEEEECSSSS----SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHH
T ss_pred CcEEEEEEEEEcCCC----CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHH
Confidence 469999999999731 2569999999999999999999999999999999999999999999999999965 45667
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 439 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 439 (614)
|+++||+||++.+|+. |++||+.++.. .+. .+++++++++.+++.+ +...+++..+||||||||+
T Consensus 416 ~~~i~~v~Q~~~l~~~-tv~eni~~~~~-~~~----~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl 489 (582)
T 3b60_A 416 RNQVALVSQNVHLFND-TVANNIAYART-EEY----SREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRI 489 (582)
T ss_dssp HHTEEEECSSCCCCSS-BHHHHHHTTTT-SCC----CHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHH
T ss_pred HhhCeEEccCCcCCCC-CHHHHHhccCC-CCC----CHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 8899999999999986 99999987531 111 1355777777777642 0233456789999999999
Q ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 440 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 440 ~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
+|||||+.+|+++||||||+|||+.+++.+++.+++..+|+|+|++||+++.++ .||||++|++|++++.|+++++.++
T Consensus 490 ~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b60_A 490 AIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIVERGTHSELLAQ 568 (582)
T ss_dssp HHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEEEecCHHHHHHc
Confidence 999999999999999999999999999999999998777999999999999986 6999999999999999999999775
Q ss_pred c
Q 007178 520 Y 520 (614)
Q Consensus 520 ~ 520 (614)
.
T Consensus 569 ~ 569 (582)
T 3b60_A 569 H 569 (582)
T ss_dssp T
T ss_pred C
Confidence 3
No 41
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=7.6e-46 Score=419.10 Aligned_cols=218 Identities=24% Similarity=0.443 Sum_probs=188.7
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 368 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~ 368 (614)
..|+++|++++|++. ++.+|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+|+.. +.+..
T Consensus 340 ~~i~~~~v~~~y~~~----~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~ 415 (587)
T 3qf4_A 340 GSVSFENVEFRYFEN----TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDL 415 (587)
T ss_dssp CCEEEEEEEECSSSS----SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHH
T ss_pred CcEEEEEEEEEcCCC----CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHH
Confidence 469999999999742 3579999999999999999999999999999999999999999999999999965 45667
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 439 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 439 (614)
|+++||+||++.+|+. |++||+.++... .. ++++.+.++..++.+ +...++++.+||||||||+
T Consensus 416 r~~i~~v~Q~~~lf~~-tv~eni~~~~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv 488 (587)
T 3qf4_A 416 RGHISAVPQETVLFSG-TIKENLKWGRED--AT----DDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRL 488 (587)
T ss_dssp HHHEEEECSSCCCCSE-EHHHHHTTTCSS--CC----HHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHH
T ss_pred HhheEEECCCCcCcCc-cHHHHHhccCCC--CC----HHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHH
Confidence 8899999999999976 999999864321 11 123334444443310 1355788899999999999
Q ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 440 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 440 ~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
+|||||+.+|+++||||||++||+.+++++.+.+++..+|+|+|++||+++.+. .||||++|++|++++.|+++++.++
T Consensus 489 ~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~el~~~ 567 (587)
T 3qf4_A 489 SIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LADKILVLHEGKVAGFGTHKELLEH 567 (587)
T ss_dssp HHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TSSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999999998888999999999999986 7999999999999999999999765
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=4.4e-46 Score=422.05 Aligned_cols=217 Identities=22% Similarity=0.434 Sum_probs=187.9
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 368 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~ 368 (614)
..|+++|++++|++ ++.+|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+|+.. +.+..
T Consensus 353 ~~i~~~~v~~~y~~-----~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~ 427 (598)
T 3qf4_B 353 GEIEFKNVWFSYDK-----KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSL 427 (598)
T ss_dssp CCEEEEEEECCSSS-----SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHH
T ss_pred CeEEEEEEEEECCC-----CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHH
Confidence 35999999999974 3569999999999999999999999999999999999999999999999999965 45667
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 439 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 439 (614)
|+++||+||++.+|+. |++||+.++.. +.+. +++.++++..++.+ +...+++..+||||||||+
T Consensus 428 r~~i~~v~Q~~~lf~~-tv~eni~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv 500 (598)
T 3qf4_B 428 RSSIGIVLQDTILFST-TVKENLKYGNP--GATD----EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLL 500 (598)
T ss_dssp HHHEEEECTTCCCCSS-BHHHHHHSSST--TCCT----THHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHH
T ss_pred HhceEEEeCCCccccc-cHHHHHhcCCC--CCCH----HHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHH
Confidence 8899999999999975 99999987421 1122 34555666665531 0122334478999999999
Q ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 440 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 440 ~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
+|||||+.+|+++||||||+|||+.+++.+.+.+++..+|+|+|++||+++++.. ||||++|++|++++.|+++++.++
T Consensus 501 ~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 579 (598)
T 3qf4_B 501 AITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVEMGKHDELIQK 579 (598)
T ss_dssp HHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CSEEEEECSSSEEECSCHHHHHHT
T ss_pred HHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999988789999999999999876 999999999999999999999875
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1e-44 Score=374.84 Aligned_cols=199 Identities=21% Similarity=0.332 Sum_probs=156.8
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 369 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~ 369 (614)
..++++|+++.+ +.+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|
T Consensus 39 ~~l~~~~l~~~~--------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g----------- 99 (290)
T 2bbs_A 39 DSLSFSNFSLLG--------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----------- 99 (290)
T ss_dssp -----------C--------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-----------
T ss_pred ceEEEEEEEEcC--------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-----------
Confidence 469999999853 3599999999999999999999999999999999999999999999988
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHH
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 440 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~ 440 (614)
++||+||++.+++. ||+||+. ... ... .+.++.++.+++.+ ....++++.+||||||||++
T Consensus 100 -~i~~v~Q~~~l~~~-tv~enl~-~~~---~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~ 169 (290)
T 2bbs_A 100 -RISFCSQNSWIMPG-TIKENII-GVS---YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS 169 (290)
T ss_dssp -CEEEECSSCCCCSS-BHHHHHH-TTC---CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHH
T ss_pred -EEEEEeCCCccCcc-cHHHHhh-Ccc---cch----HHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHH
Confidence 38999999999885 9999997 321 111 12334444445421 01233456899999999999
Q ss_pred HHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHH-HHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 441 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVV-KRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 441 ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l-~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
|||||+.+|+++||||||+|||+.+++.+++.+ ++.++|+|||++||+++++. .|||+++|++|++++.|+++++.+
T Consensus 170 lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 170 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp HHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEECCeEEEeCCHHHHhh
Confidence 999999999999999999999999999999974 45556899999999999986 599999999999999999998864
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2.5e-43 Score=430.03 Aligned_cols=224 Identities=25% Similarity=0.503 Sum_probs=194.8
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 368 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~ 368 (614)
..|+++||+++|+.+ ++.++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+ +.+.+
T Consensus 1075 g~I~f~nVsf~Y~~~---~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~l 1151 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPER---PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHT 1151 (1321)
T ss_dssp CCEEEEEEEECCTTS---CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHH
T ss_pred CeEEEEEEEEeCCCC---CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHH
Confidence 359999999999753 24579999999999999999999999999999999999999999999999999986 67889
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC------C---CcccccCCCCChhHHHHH
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH------G---GVADKQAGKYSGGMKRRL 439 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~------~---~~~~~~~~~LSgG~kqrl 439 (614)
|++||||||++.||+. |++|||.++.. +.+..++++.++++..++.+ + ........+||||||||+
T Consensus 1152 R~~i~~V~Qdp~LF~g-TIreNI~~gld----~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQri 1226 (1321)
T 4f4c_A 1152 RSQIAIVSQEPTLFDC-SIAENIIYGLD----PSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRI 1226 (1321)
T ss_dssp HTTEEEECSSCCCCSE-EHHHHHSSSSC----TTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHH
T ss_pred HhheEEECCCCEeeCc-cHHHHHhccCC----CCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHH
Confidence 9999999999999997 99999976421 11223456778888877631 0 122334567999999999
Q ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 440 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 440 ~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
+|||||+++|+|||||||||+||+++.+.+.+.|++..+|+|+|+++|.++.+.. ||||++|++|++++.|++++|.++
T Consensus 1227 aiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~-aD~I~Vld~G~IvE~Gth~eLl~~ 1305 (1321)
T 4f4c_A 1227 AIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMN-ADCIAVVSNGTIIEKGTHTQLMSE 1305 (1321)
T ss_dssp HHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTT-CSEEEEESSSSEEEEECHHHHHHC
T ss_pred HHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999988889999999999999875 999999999999999999999987
Q ss_pred cCC
Q 007178 520 YGG 522 (614)
Q Consensus 520 ~~~ 522 (614)
-|.
T Consensus 1306 ~g~ 1308 (1321)
T 4f4c_A 1306 KGA 1308 (1321)
T ss_dssp C--
T ss_pred CcH
Confidence 543
No 45
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=9.5e-42 Score=415.23 Aligned_cols=220 Identities=27% Similarity=0.485 Sum_probs=188.6
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 368 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~ 368 (614)
..|+++|++++|+++. ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+|+.. +.+.+
T Consensus 386 g~i~~~~v~~~y~~~~---~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~ 462 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSRK---EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYL 462 (1284)
T ss_dssp CCEEEEEEEECCSSTT---SCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHH
T ss_pred CeEEEEEEEEEcCCCC---CCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHH
Confidence 3599999999997531 3579999999999999999999999999999999999999999999999999965 55677
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 439 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 439 (614)
|++||||||++.+|+. |++||+.++.. ..+. +++.++++..++.+ +...+++..+||||||||+
T Consensus 463 r~~i~~v~Q~~~l~~~-ti~eNi~~g~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~Qri 535 (1284)
T 3g5u_A 463 REIIGVVSQEPVLFAT-TIAENIRYGRE--DVTM----DEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRI 535 (1284)
T ss_dssp HHHEEEECSSCCCCSS-CHHHHHHHHCS--SCCH----HHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHH
T ss_pred HhheEEEcCCCccCCc-cHHHHHhcCCC--CCCH----HHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHH
Confidence 8899999999999987 99999998632 1122 23333443333210 1234566779999999999
Q ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 440 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 440 ~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
+|||||+.+|+++|||||||+||+.+++.+.+.+++..+|+|+|++||+++++.. ||||++|++|++++.|+++++.++
T Consensus 536 aiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~~~g~~~~l~~~ 614 (1284)
T 3g5u_A 536 AIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVEQGNHDELMRE 614 (1284)
T ss_dssp HHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT-CSEEEECSSSCCCCEECHHHHHHT
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999888789999999999999976 999999999999999999999765
Q ss_pred c
Q 007178 520 Y 520 (614)
Q Consensus 520 ~ 520 (614)
.
T Consensus 615 ~ 615 (1284)
T 3g5u_A 615 K 615 (1284)
T ss_dssp T
T ss_pred C
Confidence 3
No 46
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.1e-41 Score=415.74 Aligned_cols=221 Identities=24% Similarity=0.443 Sum_probs=193.4
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 368 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~ 368 (614)
..|+++|++++|+++. ++++|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.++|.|+++ +.+.+
T Consensus 414 g~I~~~nvsF~Y~~~~---~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~l 490 (1321)
T 4f4c_A 414 GDITVENVHFTYPSRP---DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFL 490 (1321)
T ss_dssp CCEEEEEEEECCSSST---TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHH
T ss_pred CcEEEEEeeeeCCCCC---CCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHH
Confidence 3599999999998532 4689999999999999999999999999999999999999999999999999976 66778
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 439 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 439 (614)
|++||||||++.+|+. |++|||.++.. ...++++.++++..++.+ +.....+..+||||||||+
T Consensus 491 r~~i~~v~Q~~~Lf~~-TI~eNI~~g~~------~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRi 563 (1321)
T 4f4c_A 491 RKNVAVVSQEPALFNC-TIEENISLGKE------GITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRI 563 (1321)
T ss_dssp HHHEEEECSSCCCCSE-EHHHHHHTTCT------TCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHH
T ss_pred hhcccccCCcceeeCC-chhHHHhhhcc------cchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHH
Confidence 9999999999999987 99999987521 112345666766666531 1233456678999999999
Q ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 440 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 440 ~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
+||||++.+|+++|||||||+||+.+++.+.+.|.++.+|+|+|++||+++.+. .||+|++|++|++++.|++++|.++
T Consensus 564 aiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~-~aD~Iivl~~G~ive~Gth~eL~~~ 642 (1321)
T 4f4c_A 564 AIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIR-NADLIISCKNGQVVEVGDHRALMAQ 642 (1321)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTT-TCSEEEEEETTEEEEEECHHHHHTT
T ss_pred HHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHH-hCCEEEEeeCCeeeccCCHHHHHHh
Confidence 999999999999999999999999999999999999888999999999999876 5999999999999999999999876
Q ss_pred cC
Q 007178 520 YG 521 (614)
Q Consensus 520 ~~ 521 (614)
.|
T Consensus 643 ~g 644 (1321)
T 4f4c_A 643 QG 644 (1321)
T ss_dssp TC
T ss_pred hh
Confidence 43
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=6.8e-42 Score=416.52 Aligned_cols=222 Identities=21% Similarity=0.444 Sum_probs=188.4
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 368 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~ 368 (614)
..++++|++++|+++. ++.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+|+.. ..+.+
T Consensus 1029 g~i~~~~v~~~y~~~~---~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~ 1105 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTRP---SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWL 1105 (1284)
T ss_dssp CCEEEEEEEBCCSCGG---GCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHH
T ss_pred CcEEEEEEEEECCCCC---CCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHH
Confidence 3599999999997531 3469999999999999999999999999999999999999999999999999975 55678
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 439 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 439 (614)
|+++||+||++.+|+ .|++||+.++......+. +++.+.++..++.+ +........+||||||||+
T Consensus 1106 r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~~~~~~----~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv 1180 (1284)
T 3g5u_A 1106 RAQLGIVSQEPILFD-CSIAENIAYGDNSRVVSY----EEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRI 1180 (1284)
T ss_dssp TTSCEEEESSCCCCS-SBHHHHHTCCCSSCCCCH----HHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHH
T ss_pred HhceEEECCCCcccc-ccHHHHHhccCCCCCCCH----HHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHH
Confidence 899999999999887 599999987533222222 23444444444421 0122345578999999999
Q ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHh
Q 007178 440 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 519 (614)
Q Consensus 440 ~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 519 (614)
+|||||+.+|++|||||||+|||+.+++.+.+.|++..+|+|||++||+++++.. ||||++|++|++++.|+++++.++
T Consensus 1181 ~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~-~dri~vl~~G~i~~~g~~~~l~~~ 1259 (1284)
T 3g5u_A 1181 AIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQN-ADLIVVIQNGKVKEHGTHQQLLAQ 1259 (1284)
T ss_dssp HHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGS-CSEEEEEETBEEEEEECHHHHHHS
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999888789999999999999865 999999999999999999999876
Q ss_pred c
Q 007178 520 Y 520 (614)
Q Consensus 520 ~ 520 (614)
.
T Consensus 1260 ~ 1260 (1284)
T 3g5u_A 1260 K 1260 (1284)
T ss_dssp C
T ss_pred C
Confidence 3
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=7.6e-41 Score=377.92 Aligned_cols=205 Identities=24% Similarity=0.312 Sum_probs=181.1
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHh
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 368 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~ 368 (614)
...++++|+++.|++ ..++++||++++||++||+||||||||||+|+|+|+++|++|+|.+
T Consensus 355 ~~~l~~~~l~~~~~~-------~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~------------ 415 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGS-------FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW------------ 415 (607)
T ss_dssp CEEEEECCEEEECSS-------CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC------------
T ss_pred ceEEEEeceEEEecc-------eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE------------
Confidence 347999999999963 3799999999999999999999999999999999999999999975
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCC
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 448 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~ 448 (614)
+.++||+||++.+.+.+||.|++....... ....++++++++.+++. +..++++.+|||||||||+|||||+.+
T Consensus 416 ~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~----~~~~~~~~~~l~~~~l~--~~~~~~~~~LSGGe~QRv~iAraL~~~ 489 (607)
T 3bk7_A 416 DLTVAYKPQYIKAEYEGTVYELLSKIDSSK----LNSNFYKTELLKPLGII--DLYDRNVEDLSGGELQRVAIAATLLRD 489 (607)
T ss_dssp CCCEEEECSSCCCCCSSBHHHHHHHHHHHH----HHCHHHHHHTHHHHTCT--TTTTSBGGGCCHHHHHHHHHHHHHTSC
T ss_pred eeEEEEEecCccCCCCCcHHHHHHhhhccC----CCHHHHHHHHHHHcCCc--hHhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 246999999988878899999887641110 01135678899999996 488999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCceEEEEcCCHHHHHhhCCEEEEEeC--CEEEEEcCHHHHHH
Q 007178 449 PKVVYMDEPSTGLDPASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVD--GSLQCIGNPKELKA 518 (614)
Q Consensus 449 p~vllLDEPtsgLD~~~~~~i~~~l~~~--~~g~tIil~TH~~~e~~~l~dri~il~~--G~l~~~g~~~~l~~ 518 (614)
|++|||||||+|||+.+++.++++|+++ ++|+|||++|||++++..+|||+++|++ |++...|+++++..
T Consensus 490 p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 490 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 9999999999999999999999999986 3599999999999999999999999996 88888999988765
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=9.4e-41 Score=373.16 Aligned_cols=205 Identities=24% Similarity=0.326 Sum_probs=180.4
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHh
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 368 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~ 368 (614)
...++++|+++.|++ ..++++||+|++||++||+||||||||||+|+|+|+++|++|+|.+
T Consensus 285 ~~~l~~~~l~~~~~~-------~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~------------ 345 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGS-------FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW------------ 345 (538)
T ss_dssp CEEEEECCEEEEETT-------EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC------------
T ss_pred CeEEEEeeEEEEECC-------EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE------------
Confidence 357999999999963 3799999999999999999999999999999999999999999975
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCC
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 448 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~ 448 (614)
...+||+||+....+.+||.|++....... .. .+++++++++.+++. +..++++.+|||||||||+|||||+.+
T Consensus 346 ~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~-~~---~~~~~~~~l~~~~l~--~~~~~~~~~LSGGe~qrv~lAraL~~~ 419 (538)
T 1yqt_A 346 DLTVAYKPQYIKADYEGTVYELLSKIDASK-LN---SNFYKTELLKPLGII--DLYDREVNELSGGELQRVAIAATLLRD 419 (538)
T ss_dssp CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-HT---CHHHHHHTTTTTTCG--GGTTSBGGGCCHHHHHHHHHHHHHTSC
T ss_pred CceEEEEecCCcCCCCCcHHHHHHhhhccC-CC---HHHHHHHHHHHcCCh--hhhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 235999999988778899999887541111 01 135678899999996 478999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHhhCCEEEEEeC--CEEEEEcCHHHHHH
Q 007178 449 PKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVD--GSLQCIGNPKELKA 518 (614)
Q Consensus 449 p~vllLDEPtsgLD~~~~~~i~~~l~~~~--~g~tIil~TH~~~e~~~l~dri~il~~--G~l~~~g~~~~l~~ 518 (614)
|++|||||||+|||+.+++.++++|+++. +|.|||++|||++++..+|||+++|++ |++...|+++++..
T Consensus 420 p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 420 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 99999999999999999999999999863 499999999999999999999999996 78888999987764
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.2e-40 Score=369.44 Aligned_cols=205 Identities=22% Similarity=0.283 Sum_probs=176.7
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHh
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 368 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~ 368 (614)
...++++|++|.|++ ..+++.|++|++||++||+||||||||||+|+|+|+++|++|+|.++|
T Consensus 267 ~~~l~~~~l~~~~~~-------~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~---------- 329 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGD-------FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK---------- 329 (538)
T ss_dssp CEEEEECCEEEEETT-------EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC----------
T ss_pred cceEEEcceEEEECC-------EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC----------
Confidence 357999999999973 468888999999999999999999999999999999999999998765
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCC
Q 007178 369 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 448 (614)
Q Consensus 369 ~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~ 448 (614)
+.++|+||+......+||+||+.+..... .. .....++++++.+++. +..++++.+|||||||||+|||||+.+
T Consensus 330 -~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-~~--~~~~~~~~~l~~~~l~--~~~~~~~~~LSGGq~QRv~iAraL~~~ 403 (538)
T 3ozx_A 330 -QILSYKPQRIFPNYDGTVQQYLENASKDA-LS--TSSWFFEEVTKRLNLH--RLLESNVNDLSGGELQKLYIAATLAKE 403 (538)
T ss_dssp -CCEEEECSSCCCCCSSBHHHHHHHHCSST-TC--TTSHHHHHTTTTTTGG--GCTTSBGGGCCHHHHHHHHHHHHHHSC
T ss_pred -eeeEeechhcccccCCCHHHHHHHhhhhc-cc--hhHHHHHHHHHHcCCH--HHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 35899999977667889999998742211 11 1234578899999996 488999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHhhCCEEEEEeC--CEEEEEcCHHHH
Q 007178 449 PKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVD--GSLQCIGNPKEL 516 (614)
Q Consensus 449 p~vllLDEPtsgLD~~~~~~i~~~l~~~~--~g~tIil~TH~~~e~~~l~dri~il~~--G~l~~~g~~~~l 516 (614)
|++|||||||+|||+.++++++++|+++. .|+|||++|||++++..+||||++|++ |.....+++.++
T Consensus 404 p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~ 475 (538)
T 3ozx_A 404 ADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTL 475 (538)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHH
Confidence 99999999999999999999999999863 589999999999999999999999986 455555665444
No 51
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=2.5e-39 Score=365.59 Aligned_cols=198 Identities=25% Similarity=0.340 Sum_probs=165.9
Q ss_pred eEEE--------EeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEE--------
Q 007178 291 AIIS--------DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA-------- 354 (614)
Q Consensus 291 ~i~~--------~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i-------- 354 (614)
+|++ +|++|+|++ ...+++|+| ++++||++||+||||||||||+|+|+|+++|++|++
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~-----~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~ 156 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGV-----NAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVI 156 (607)
T ss_dssp CCEEEEECTTGGGSEEEECST-----TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHH
T ss_pred eEEEecCCccccCCeEEEECC-----CCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhh
Confidence 5788 889999974 125999999 999999999999999999999999999999999996
Q ss_pred -EEcCeeCCCcH---HHhhcceEEEcCCCCCCC---CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCccccc
Q 007178 355 -YVQGLDIRTDM---DRIYTSMGVCPQEDLLWE---TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQ 427 (614)
Q Consensus 355 -~i~G~~i~~~~---~~~~~~ig~~~Q~~~l~~---~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~ 427 (614)
.++|.++.... ...+..+++++|+....+ ..|++||+... . .+++++++++.+||. +..+++
T Consensus 157 ~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~----~-----~~~~~~~~L~~lgL~--~~~~~~ 225 (607)
T 3bk7_A 157 RAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV----D-----EVGKFEEVVKELELE--NVLDRE 225 (607)
T ss_dssp HHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT----C-----CSSCHHHHHHHTTCT--TGGGSB
T ss_pred heeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh----H-----HHHHHHHHHHHcCCC--chhCCC
Confidence 45665543211 112346899999743322 13999998631 1 124578899999997 478999
Q ss_pred CCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCC
Q 007178 428 AGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDG 505 (614)
Q Consensus 428 ~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G 505 (614)
+++||||||||++||+||+.+|++|||||||+|||+.+++.+++.|+++ ++|+|||++|||++++..+||||++|+++
T Consensus 226 ~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 226 LHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp GGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 9999999999999999999999999999999999999999999999986 46999999999999999999999999864
No 52
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-38 Score=360.06 Aligned_cols=202 Identities=23% Similarity=0.300 Sum_probs=172.8
Q ss_pred EeEEEEcCCCCCCCccceeeeeeEEEeCC-----cEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhh
Q 007178 295 DNLRKIYPGRDGNPEKVAVNGLSLALPSG-----ECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 369 (614)
Q Consensus 295 ~~l~k~y~~~~~~~~~~~l~~isl~i~~G-----ei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~ 369 (614)
+++++.|++ .+.+++|+||++++| |++||+||||||||||+|+|+|+++|++|+. +. +
T Consensus 350 ~~~~~~y~~-----~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~------~ 412 (608)
T 3j16_B 350 ASRAFSYPS-----LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP------K 412 (608)
T ss_dssp SSSCCEECC-----EEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC------S
T ss_pred cceeEEecC-----cccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc------C
Confidence 456677864 246899999999999 8899999999999999999999999999962 11 2
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCC
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 449 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p 449 (614)
..++|+||+.......||+|++... .++.. ...+.++++++.++|. +..++++.+|||||||||+|||||+.+|
T Consensus 413 ~~i~~~~q~~~~~~~~tv~e~~~~~--~~~~~--~~~~~~~~~l~~l~l~--~~~~~~~~~LSGGqkQRv~iAraL~~~p 486 (608)
T 3j16_B 413 LNVSMKPQKIAPKFPGTVRQLFFKK--IRGQF--LNPQFQTDVVKPLRID--DIIDQEVQHLSGGELQRVAIVLALGIPA 486 (608)
T ss_dssp CCEEEECSSCCCCCCSBHHHHHHHH--CSSTT--TSHHHHHHTHHHHTST--TTSSSBSSSCCHHHHHHHHHHHHTTSCC
T ss_pred CcEEEecccccccCCccHHHHHHHH--hhccc--ccHHHHHHHHHHcCCh--hhhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 4699999997766667999987532 22211 1234677899999997 4899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHhhCCEEEEEeC--CEEEEEcCHHHHHHh
Q 007178 450 KVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVD--GSLQCIGNPKELKAR 519 (614)
Q Consensus 450 ~vllLDEPtsgLD~~~~~~i~~~l~~~-~-~g~tIil~TH~~~e~~~l~dri~il~~--G~l~~~g~~~~l~~~ 519 (614)
++|||||||+|||+.+++.++++|+++ + +|+|||++|||++++..+||||++|++ |++.+.|+|+++.+.
T Consensus 487 ~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 487 DIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp SEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 999999999999999999999999986 3 599999999999999999999999997 899999999888653
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=3.5e-39 Score=360.44 Aligned_cols=194 Identities=23% Similarity=0.321 Sum_probs=162.6
Q ss_pred EeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEE---------EEcCeeCCCcH
Q 007178 295 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA---------YVQGLDIRTDM 365 (614)
Q Consensus 295 ~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i---------~i~G~~i~~~~ 365 (614)
+||+|+|++ ...+++|+| +|++||++||+||||||||||+|+|+|+++|++|++ .++|.++....
T Consensus 25 ~~ls~~yg~-----~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~ 98 (538)
T 1yqt_A 25 EDCVHRYGV-----NAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYF 98 (538)
T ss_dssp CCEEEECST-----TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHH
T ss_pred cCcEEEECC-----ccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHH
Confidence 599999974 125899999 999999999999999999999999999999999995 35665543211
Q ss_pred ---HHhhcceEEEcCCCCCCCC---CCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHH
Q 007178 366 ---DRIYTSMGVCPQEDLLWET---LTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRL 439 (614)
Q Consensus 366 ---~~~~~~ig~~~Q~~~l~~~---lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl 439 (614)
...+..+++++|+..+++. .|+.|++... +.+++++++++.+|+. ...++++++|||||||||
T Consensus 99 ~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~---------~~~~~~~~~l~~lgl~--~~~~~~~~~LSgGekQRv 167 (538)
T 1yqt_A 99 EKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA---------DETGKLEEVVKALELE--NVLEREIQHLSGGELQRV 167 (538)
T ss_dssp HHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHH---------CSSSCHHHHHHHTTCT--TTTTSBGGGCCHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhh---------hHHHHHHHHHHHcCCC--hhhhCChhhCCHHHHHHH
Confidence 1123468999997544332 3899987531 1123578899999997 378999999999999999
Q ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEEeCC
Q 007178 440 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDG 505 (614)
Q Consensus 440 ~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il~~G 505 (614)
+||+||+.+|++|||||||++||+.+++++++.|+++ ++|+|||++|||++++..+||||++|++|
T Consensus 168 ~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 168 AIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 9999999999999999999999999999999999986 46999999999999999999999999864
No 54
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=1.3e-38 Score=371.65 Aligned_cols=206 Identities=24% Similarity=0.343 Sum_probs=167.2
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 369 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~ 369 (614)
.+++++|++++|++. ++.+|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|.
T Consensus 670 ~mL~v~nLs~~Y~g~----~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~---------- 735 (986)
T 2iw3_A 670 AIVKVTNMEFQYPGT----SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN---------- 735 (986)
T ss_dssp EEEEEEEEEECCTTC----SSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT----------
T ss_pred ceEEEEeeEEEeCCC----CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc----------
Confidence 479999999999742 256999999999999999999999999999999999999999999999862
Q ss_pred cceEEEcCCCCC----CCCCCHHHHHHHHhhh------------------------------------------------
Q 007178 370 TSMGVCPQEDLL----WETLTGREHLLFYGRL------------------------------------------------ 397 (614)
Q Consensus 370 ~~ig~~~Q~~~l----~~~lTv~e~l~~~~~~------------------------------------------------ 397 (614)
..+||++|++.. ..+.|++|++.+....
T Consensus 736 ~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~ 815 (986)
T 2iw3_A 736 CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTY 815 (986)
T ss_dssp CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEE
T ss_pred cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccc
Confidence 137777776421 1234666666542100
Q ss_pred -----------------------------------------------------cCCCchhHHHHHHHHHHHcCCCCCCc-
Q 007178 398 -----------------------------------------------------KNLKGPALTQAVEESLKSVNLFHGGV- 423 (614)
Q Consensus 398 -----------------------------------------------------~~~~~~~~~~~~~~~l~~~~L~~~~~- 423 (614)
.+......+++++++++.+||.. ..
T Consensus 816 ~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~-~~~ 894 (986)
T 2iw3_A 816 EYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDP-EIV 894 (986)
T ss_dssp EEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCH-HHH
T ss_pred hhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCc-hhh
Confidence 00001112456889999999962 23
Q ss_pred ccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEe
Q 007178 424 ADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV 503 (614)
Q Consensus 424 ~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~ 503 (614)
.++++++||||||||++|||||+.+|++|||||||+|||+.+++.+++.|++. |.|||++|||++++..+|||+++|+
T Consensus 895 ~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~DrVivL~ 972 (986)
T 2iw3_A 895 SHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEEVWAVK 972 (986)
T ss_dssp HHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCCEEECCB
T ss_pred cCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEEE
Confidence 58899999999999999999999999999999999999999999999998765 5699999999999999999999999
Q ss_pred CCEEEEEcC
Q 007178 504 DGSLQCIGN 512 (614)
Q Consensus 504 ~G~l~~~g~ 512 (614)
+|+++..|+
T Consensus 973 ~G~Iv~~G~ 981 (986)
T 2iw3_A 973 DGRMTPSGH 981 (986)
T ss_dssp TTBCCC---
T ss_pred CCEEEEeCC
Confidence 999987774
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=1.6e-37 Score=362.61 Aligned_cols=199 Identities=20% Similarity=0.295 Sum_probs=172.8
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhc
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 370 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~ 370 (614)
.+...|++|.|++ +.+|+|+||++++||++||+||||||||||+|+|+| |+| +|.+... +.
T Consensus 435 ~L~~~~ls~~yg~------~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~-----~~ 495 (986)
T 2iw3_A 435 DLCNCEFSLAYGA------KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE-----EC 495 (986)
T ss_dssp EEEEEEEEEEETT------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT-----TS
T ss_pred eeEEeeEEEEECC------EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc-----ce
Confidence 5777799999973 579999999999999999999999999999999995 554 5544321 12
Q ss_pred ceEEEcCCC-CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCC
Q 007178 371 SMGVCPQED-LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 449 (614)
Q Consensus 371 ~ig~~~Q~~-~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p 449 (614)
+++|++|+. .+++.+|+.||+.+ ...+. +++++++++.+|+.+ +..++++++||||||||++|||||+.+|
T Consensus 496 ~~~~v~q~~~~~~~~ltv~e~l~~--~~~~~-----~~~v~~~L~~lgL~~-~~~~~~~~~LSGGqkQRvaLArAL~~~P 567 (986)
T 2iw3_A 496 RTVYVEHDIDGTHSDTSVLDFVFE--SGVGT-----KEAIKDKLIEFGFTD-EMIAMPISALSGGWKMKLALARAVLRNA 567 (986)
T ss_dssp CEEETTCCCCCCCTTSBHHHHHHT--TCSSC-----HHHHHHHHHHTTCCH-HHHHSBGGGCCHHHHHHHHHHHHHHTTC
T ss_pred eEEEEcccccccccCCcHHHHHHH--hhcCH-----HHHHHHHHHHcCCCh-hhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 478999984 67889999999975 22221 567899999999952 3689999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEE-EEcCHHHHHH
Q 007178 450 KVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQ-CIGNPKELKA 518 (614)
Q Consensus 450 ~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~-~~g~~~~l~~ 518 (614)
++|||||||+|||+.+++.+++.|++ +|+|||++|||++++..+|||+++|++|+++ ..|+++++.+
T Consensus 568 ~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 568 DILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred CEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 99999999999999999999999988 6899999999999999999999999999997 6899988754
No 56
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=5.2e-38 Score=360.63 Aligned_cols=205 Identities=19% Similarity=0.282 Sum_probs=142.8
Q ss_pred cceeeeeeEEEeCCcEEEEECCCCCcHHHHH---------------------HHHhCCCCCC-------ccEEEEcCeeC
Q 007178 310 KVAVNGLSLALPSGECFGMLGPNGAGKTTFI---------------------SMMIGITRTT-------SGTAYVQGLDI 361 (614)
Q Consensus 310 ~~~l~~isl~i~~Gei~~LlG~NGaGKTTll---------------------~~l~Gl~~p~-------sG~i~i~G~~i 361 (614)
+.+|+|+||+|++||++||+||||||||||+ +++.|+.+|+ .|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 5699999999999999999999999999998 9999999999 45556666544
Q ss_pred CCcHHHhhcceEEEcCCCC-------------------CCCCCCHHHHHHHHhhhcCCC--chhHH------HHHHHHHH
Q 007178 362 RTDMDRIYTSMGVCPQEDL-------------------LWETLTGREHLLFYGRLKNLK--GPALT------QAVEESLK 414 (614)
Q Consensus 362 ~~~~~~~~~~ig~~~Q~~~-------------------l~~~lTv~e~l~~~~~~~~~~--~~~~~------~~~~~~l~ 414 (614)
.. ..++.+|+++|... .++.+||+||+.++..+.... ....+ .+..++++
T Consensus 111 ~~---~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 187 (670)
T 3ux8_A 111 SR---NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQ 187 (670)
T ss_dssp -------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHH
T ss_pred hc---cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 22 12334555555432 346789999998754332111 00000 01124588
Q ss_pred HcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCC--EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHH
Q 007178 415 SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK--VVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEE 491 (614)
Q Consensus 415 ~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~--vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e 491 (614)
.+||.+ ...++++.+|||||||||+|||||+.+|+ +|||||||+||||.++++++++|+++ ++|.|||++|||+++
T Consensus 188 ~~gL~~-~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~ 266 (670)
T 3ux8_A 188 NVGLDY-LTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDT 266 (670)
T ss_dssp HTTCTT-CCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHH
T ss_pred HcCCch-hhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 899963 34689999999999999999999999998 99999999999999999999999986 469999999999998
Q ss_pred HHhhCCEEEEE------eCCEEEEEcCHHHHHHh
Q 007178 492 AEALCDRLGIF------VDGSLQCIGNPKELKAR 519 (614)
Q Consensus 492 ~~~l~dri~il------~~G~l~~~g~~~~l~~~ 519 (614)
+. .|||+++| ++|++++.|+++++.+.
T Consensus 267 ~~-~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~ 299 (670)
T 3ux8_A 267 ML-AADYLIDIGPGAGIHGGEVVAAGTPEEVMND 299 (670)
T ss_dssp HH-HCSEEEEECSSSGGGCCSEEEEECHHHHHTC
T ss_pred Hh-hCCEEEEecccccccCCEEEEecCHHHHhcC
Confidence 76 59999999 89999999999988643
No 57
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.3e-36 Score=335.94 Aligned_cols=201 Identities=22% Similarity=0.312 Sum_probs=155.9
Q ss_pred eEEEEe--------EEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEE--------
Q 007178 291 AIISDN--------LRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA-------- 354 (614)
Q Consensus 291 ~i~~~~--------l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i-------- 354 (614)
+|++.| ++++|+. +...+++++ .+++||++||+||||||||||+|+|+|+++|++|+|
T Consensus 69 ~i~i~nl~~~~~~~~~~~Y~~-----~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~ 142 (608)
T 3j16_B 69 AIQIINLPTNLEAHVTHRYSA-----NSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQE 142 (608)
T ss_dssp CEEEEEESSSSSTTEEEECST-----TSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHH
T ss_pred ceEEecCChhhcCCeEEEECC-----CceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhh
Confidence 566655 5677763 235777777 689999999999999999999999999999999998
Q ss_pred ---EEcCeeCCCcH-HHhhcce--EEEcCCCCC------CCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCC
Q 007178 355 ---YVQGLDIRTDM-DRIYTSM--GVCPQEDLL------WETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGG 422 (614)
Q Consensus 355 ---~i~G~~i~~~~-~~~~~~i--g~~~Q~~~l------~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~ 422 (614)
.+.|.++.... ....+.+ .+.+|.... -+..++.+++... .+..+++++++++.+||. .
T Consensus 143 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~-------~~~~~~~~~~~l~~~gl~--~ 213 (608)
T 3j16_B 143 IIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR-------MEKSPEDVKRYIKILQLE--N 213 (608)
T ss_dssp HHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHH-------CCSCHHHHHHHHHHHTCT--G
T ss_pred hhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhh-------hhhHHHHHHHHHHHcCCc--c
Confidence 23333321111 1112222 344554221 1223566655432 112246788999999997 4
Q ss_pred cccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEE
Q 007178 423 VADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGI 501 (614)
Q Consensus 423 ~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~i 501 (614)
..++++.+||||||||++||+||+.+|++|||||||+|||+.+++.++++|++++ +|+|||++||+++++..+||||++
T Consensus 214 ~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~v 293 (608)
T 3j16_B 214 VLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCI 293 (608)
T ss_dssp GGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEE
T ss_pred hhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 8999999999999999999999999999999999999999999999999999974 599999999999999999999999
Q ss_pred EeCCE
Q 007178 502 FVDGS 506 (614)
Q Consensus 502 l~~G~ 506 (614)
|++|.
T Consensus 294 l~~~~ 298 (608)
T 3j16_B 294 IYGVP 298 (608)
T ss_dssp EESCT
T ss_pred EeCCc
Confidence 98765
No 58
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.7e-35 Score=339.68 Aligned_cols=201 Identities=21% Similarity=0.349 Sum_probs=157.3
Q ss_pred cceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHh----------------------CCCCCCccEEEEcCeeCCCcHH-
Q 007178 310 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMI----------------------GITRTTSGTAYVQGLDIRTDMD- 366 (614)
Q Consensus 310 ~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~----------------------Gl~~p~sG~i~i~G~~i~~~~~- 366 (614)
+.+|+|+||+|++||++||+||||||||||+++|. |+..+ +|.+.++|.++.....
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~-~~~i~~~~~~~~~~~~~ 413 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL-DKVIDIDQSPIGRTPRS 413 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC-SEEEECCSSCSCSSTTC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc-CceeEeccccCCCCCCc
Confidence 45899999999999999999999999999998753 45444 4688888887642110
Q ss_pred ---H-------------------h-------------------hcceEEEcCCCCCCC----------------------
Q 007178 367 ---R-------------------I-------------------YTSMGVCPQEDLLWE---------------------- 383 (614)
Q Consensus 367 ---~-------------------~-------------------~~~ig~~~Q~~~l~~---------------------- 383 (614)
. . ....|+++|+..+++
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (670)
T 3ux8_A 414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT 493 (670)
T ss_dssp CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence 0 0 012244444333322
Q ss_pred ----------CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCC---C
Q 007178 384 ----------TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP---K 450 (614)
Q Consensus 384 ----------~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p---~ 450 (614)
.+||+||+.+.... ...++..+.++.+++.. ...++++.+|||||||||+|||||+.+| +
T Consensus 494 ~~~~~~~~~~~ltv~e~l~~~~~~------~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~ 566 (670)
T 3ux8_A 494 YKGKNIAEVLDMTVEDALDFFASI------PKIKRKLETLYDVGLGY-MKLGQPATTLSGGEAQRVKLAAELHRRSNGRT 566 (670)
T ss_dssp BTTBCHHHHHTSBHHHHHHHTTTC------HHHHHHHHHHHHTTCTT-SBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCE
T ss_pred ecCCCHHHHhhCCHHHHHHHHHHh------hhHHHHHHHHHHcCCch-hhccCCchhCCHHHHHHHHHHHHHhhCCCCCc
Confidence 47999999886432 12345667888999963 4578999999999999999999999887 5
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEE------eCCEEEEEcCHHHHHHh
Q 007178 451 VVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF------VDGSLQCIGNPKELKAR 519 (614)
Q Consensus 451 vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il------~~G~l~~~g~~~~l~~~ 519 (614)
+|||||||+||||.++++++++|+++ ++|+|||++|||++++. .||||++| ++|++++.|+++++.+.
T Consensus 567 llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~ 641 (670)
T 3ux8_A 567 LYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIK-TADYIIDLGPEGGDRGGQIVAVGTPEEVAEV 641 (670)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEEEEESSSGGGCCEEEEEECHHHHHTC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH-hCCEEEEecCCcCCCCCEEEEecCHHHHHhC
Confidence 99999999999999999999999986 46999999999999885 69999999 89999999999999653
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.5e-36 Score=335.66 Aligned_cols=192 Identities=24% Similarity=0.270 Sum_probs=153.0
Q ss_pred eEEEEcCCCCCCCccceeeeeeEEE-eCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEE-----------EEcCeeCCC
Q 007178 296 NLRKIYPGRDGNPEKVAVNGLSLAL-PSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA-----------YVQGLDIRT 363 (614)
Q Consensus 296 ~l~k~y~~~~~~~~~~~l~~isl~i-~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i-----------~i~G~~i~~ 363 (614)
+.+.+|+. ..++-..|.+ ++||++||+||||||||||+|+|+|+++|++|+| .++|+++..
T Consensus 4 ~~~~~~~~-------~~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~ 76 (538)
T 3ozx_A 4 EVIHRYKV-------NGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYN 76 (538)
T ss_dssp CEEEESST-------TSCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHH
T ss_pred CCceecCC-------CceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHH
Confidence 56778974 2344444544 5999999999999999999999999999999998 577766532
Q ss_pred cHHH-h--hcceEEEcCC----CCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHH
Q 007178 364 DMDR-I--YTSMGVCPQE----DLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK 436 (614)
Q Consensus 364 ~~~~-~--~~~ig~~~Q~----~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~k 436 (614)
.... . ...+...+|. +.++. .|++|++... +.+++++++++.+++. ...++++.+||||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~l~~~---------~~~~~~~~~l~~l~l~--~~~~~~~~~LSgGe~ 144 (538)
T 3ozx_A 77 YFKELYSNELKIVHKIQYVEYASKFLK-GTVNEILTKI---------DERGKKDEVKELLNMT--NLWNKDANILSGGGL 144 (538)
T ss_dssp HHHHHHTTCCCEEEECSCTTGGGTTCC-SBHHHHHHHH---------CCSSCHHHHHHHTTCG--GGTTSBGGGCCHHHH
T ss_pred HHHHHhhcccchhhccchhhhhhhhcc-CcHHHHhhcc---------hhHHHHHHHHHHcCCc--hhhcCChhhCCHHHH
Confidence 1111 1 1223444444 33333 3888865421 1123567899999996 478999999999999
Q ss_pred HHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCE
Q 007178 437 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGS 506 (614)
Q Consensus 437 qrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~ 506 (614)
||++||+||+.+|++|||||||+|||+.+++.++++|+++++|+|||++||+++++..+||||.+|++|.
T Consensus 145 Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 145 QRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 9999999999999999999999999999999999999998779999999999999999999999998753
No 60
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=1.7e-33 Score=325.93 Aligned_cols=212 Identities=24% Similarity=0.324 Sum_probs=164.4
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHH-HhCCC-------CC-----------
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISM-MIGIT-------RT----------- 349 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~-l~Gl~-------~p----------- 349 (614)
...++++|+++ .+|+|+||+|++||++||+|+||||||||+++ |+|++ +|
T Consensus 500 ~~~L~v~~l~~-----------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~ 568 (842)
T 2vf7_A 500 AGWLELNGVTR-----------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPAD 568 (842)
T ss_dssp SCEEEEEEEEE-----------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC--------------
T ss_pred CceEEEEeeee-----------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccc
Confidence 34699999974 16999999999999999999999999999996 77553 23
Q ss_pred -------Ccc-------EEEEcCeeCCCcH-----------HHhh---------cceEEEcCCC----------------
Q 007178 350 -------TSG-------TAYVQGLDIRTDM-----------DRIY---------TSMGVCPQED---------------- 379 (614)
Q Consensus 350 -------~sG-------~i~i~G~~i~~~~-----------~~~~---------~~ig~~~Q~~---------------- 379 (614)
.+| .|.++|.++.... +.+| +..||.++..
T Consensus 569 ~~~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G 648 (842)
T 2vf7_A 569 HTAGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEG 648 (842)
T ss_dssp ---CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCS
T ss_pred cccccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCC
Confidence 466 6888988774211 1122 1223332211
Q ss_pred ------CC------------------------CC--------CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC
Q 007178 380 ------LL------------------------WE--------TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG 421 (614)
Q Consensus 380 ------~l------------------------~~--------~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~ 421 (614)
.+ +. .+|+.|++.++.. ....+++.++++.+||..
T Consensus 649 ~~~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~------~~~~~~~~~~L~~~gL~~- 721 (842)
T 2vf7_A 649 WVMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFAD------ESAIFRALDTLREVGLGY- 721 (842)
T ss_dssp EEEETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT------SHHHHHHHHHHHHTTCTT-
T ss_pred ccchhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhc------chHHHHHHHHHHHcCCCc-
Confidence 11 11 2455565554321 122356789999999963
Q ss_pred CcccccCCCCChhHHHHHHHHHHHhCC---CCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCC
Q 007178 422 GVADKQAGKYSGGMKRRLSVAISLIGN---PKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCD 497 (614)
Q Consensus 422 ~~~~~~~~~LSgG~kqrl~ia~al~~~---p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~d 497 (614)
...++++.+|||||||||+||++|+.+ |+++||||||+|||+.+++.++++|+++ ++|.|||++|||++++ ..||
T Consensus 722 ~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i-~~aD 800 (842)
T 2vf7_A 722 LRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVV-AASD 800 (842)
T ss_dssp SBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCS
T ss_pred ccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCC
Confidence 246899999999999999999999996 7999999999999999999999999986 5799999999999999 6899
Q ss_pred EEEEE------eCCEEEEEcCHHHHHHh
Q 007178 498 RLGIF------VDGSLQCIGNPKELKAR 519 (614)
Q Consensus 498 ri~il------~~G~l~~~g~~~~l~~~ 519 (614)
||++| ++|++++.|+++++.+.
T Consensus 801 rii~L~p~~g~~~G~Iv~~g~~~el~~~ 828 (842)
T 2vf7_A 801 WVLDIGPGAGEDGGRLVAQGTPAEVAQA 828 (842)
T ss_dssp EEEEECSSSGGGCCSEEEEECHHHHTTC
T ss_pred EEEEECCCCCCCCCEEEEEcCHHHHHhC
Confidence 99999 79999999999998654
No 61
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=3.7e-33 Score=323.53 Aligned_cols=211 Identities=21% Similarity=0.317 Sum_probs=166.8
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHh-CCC-------CCCcc---------
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMI-GIT-------RTTSG--------- 352 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~-Gl~-------~p~sG--------- 352 (614)
..++++|+++ .+|+|+||+|++||++||+|+||||||||+++|. |.+ .+..|
T Consensus 628 ~~L~v~~l~~-----------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~ 696 (972)
T 2r6f_A 628 RWLEVVGARE-----------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLE 696 (972)
T ss_dssp CEEEEEEECS-----------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGG
T ss_pred eEEEEecCcc-----------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeecccc
Confidence 4688888851 2799999999999999999999999999999853 221 12333
Q ss_pred ----EEEEcCeeCCCc----HH-------Hh---------hcceEEEcCCCCCCC-------------------------
Q 007178 353 ----TAYVQGLDIRTD----MD-------RI---------YTSMGVCPQEDLLWE------------------------- 383 (614)
Q Consensus 353 ----~i~i~G~~i~~~----~~-------~~---------~~~ig~~~Q~~~l~~------------------------- 383 (614)
.|.++|.++... .. .+ .+.+||+||...+.+
T Consensus 697 ~~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~ 776 (972)
T 2r6f_A 697 HLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVY 776 (972)
T ss_dssp GCSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEE
T ss_pred ccceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccc
Confidence 378888776321 10 11 134688888543210
Q ss_pred -----------------------------CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChh
Q 007178 384 -----------------------------TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG 434 (614)
Q Consensus 384 -----------------------------~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG 434 (614)
.+|+.|++.++... .. .++..++++.+||.. ...++++.+||||
T Consensus 777 ~~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~-----~~-~~~~~~~L~~~gL~~-~~l~~~~~~LSGG 849 (972)
T 2r6f_A 777 VPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASI-----PK-IKRKLETLYDVGLGY-MKLGQPATTLSGG 849 (972)
T ss_dssp EECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSC-----HH-HHHHHHHHHHTTCSS-SBTTCCGGGCCHH
T ss_pred ccccccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcc-----hh-HHHHHHHHHHcCCCc-ccccCchhhCCHH
Confidence 46888888875432 11 234578999999963 3678999999999
Q ss_pred HHHHHHHHHHHhCCC---CEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEE------eC
Q 007178 435 MKRRLSVAISLIGNP---KVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF------VD 504 (614)
Q Consensus 435 ~kqrl~ia~al~~~p---~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il------~~ 504 (614)
|||||+||+||+.+| +++||||||+|||+.+++.++++|+++ ++|.|||++|||++++. .||||++| ++
T Consensus 850 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~-~aDrIivL~p~gG~~~ 928 (972)
T 2r6f_A 850 EAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIK-TADYIIDLGPEGGDRG 928 (972)
T ss_dssp HHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEEEECSSSTTSC
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH-hCCEEEEEcCCCCCCC
Confidence 999999999999865 999999999999999999999999986 46999999999999985 79999999 79
Q ss_pred CEEEEEcCHHHHHHh
Q 007178 505 GSLQCIGNPKELKAR 519 (614)
Q Consensus 505 G~l~~~g~~~~l~~~ 519 (614)
|++++.|+++++.+.
T Consensus 929 G~Iv~~g~~~el~~~ 943 (972)
T 2r6f_A 929 GQIVAVGTPEEVAEV 943 (972)
T ss_dssp CSEEEEESHHHHHTC
T ss_pred CEEEEecCHHHHHhC
Confidence 999999999998764
No 62
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.5e-32 Score=320.51 Aligned_cols=201 Identities=21% Similarity=0.337 Sum_probs=159.9
Q ss_pred ceeeeeeEEEeCCcEEEEECCCCCcHHHHH---------HHHhCCCCCCc------c------EEEEcCeeCCCc----H
Q 007178 311 VAVNGLSLALPSGECFGMLGPNGAGKTTFI---------SMMIGITRTTS------G------TAYVQGLDIRTD----M 365 (614)
Q Consensus 311 ~~l~~isl~i~~Gei~~LlG~NGaGKTTll---------~~l~Gl~~p~s------G------~i~i~G~~i~~~----~ 365 (614)
.+|+|+||+|++|+++||+||||||||||+ +.+.|...+.. | .+.+++.++... .
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 479999999999999999999999999997 45555444433 2 244444443210 0
Q ss_pred -------HH-------------------------------hhcceEEEcCCCCCCC------------------------
Q 007178 366 -------DR-------------------------------IYTSMGVCPQEDLLWE------------------------ 383 (614)
Q Consensus 366 -------~~-------------------------------~~~~ig~~~Q~~~l~~------------------------ 383 (614)
+. ..+..|+++|+..+++
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 00 1134577877766554
Q ss_pred --------CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCC---CEE
Q 007178 384 --------TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP---KVV 452 (614)
Q Consensus 384 --------~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p---~vl 452 (614)
.+||.|++.|+... ....++.++|+.+||.. ...++++.+||||||||++|||||+.+| +++
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~------~~~~~~~~~L~~vGL~~-~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LL 830 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNI------PSIKRTLQVLHDVGLGY-VKLGQPATTLSGGEAQRIKLASELRKRDTGRTLY 830 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTC------HHHHHHHHHHHHTTGGG-SBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEE
T ss_pred cCCHHHHhhCCHHHHHHHHhcc------hhHHHHHHHHHHcCCch-hhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEE
Confidence 37889999886432 22356778999999963 3468999999999999999999999875 799
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEE------eCCEEEEEcCHHHHHHh
Q 007178 453 YMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF------VDGSLQCIGNPKELKAR 519 (614)
Q Consensus 453 lLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il------~~G~l~~~g~~~~l~~~ 519 (614)
||||||+|||+.+++.+++.|+++ ++|.|||++|||++++.. ||||++| ++|++++.|+++++.+.
T Consensus 831 ILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~-ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~ 903 (916)
T 3pih_A 831 ILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKN-ADHIIDLGPEGGKEGGYIVATGTPEEIAKN 903 (916)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT-CSEEEEEESSSGGGCCEEEEEESHHHHHSC
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh-CCEEEEecCCCCCCCCEEEEEcCHHHHHhC
Confidence 999999999999999999999986 469999999999999875 9999999 89999999999999764
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.98 E-value=1.8e-32 Score=318.81 Aligned_cols=211 Identities=21% Similarity=0.315 Sum_probs=164.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHh-C----CCC---CCccE--------
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMI-G----ITR---TTSGT-------- 353 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~-G----l~~---p~sG~-------- 353 (614)
..++++|+++ .+|+|+||+|++||++||+|+||||||||+++|. | .+. +..|.
T Consensus 646 ~~L~v~~l~~-----------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~ 714 (993)
T 2ygr_A 646 RQLTVVGARE-----------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLD 714 (993)
T ss_dssp SEEEEEEECS-----------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCT
T ss_pred ceEEEecCcc-----------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCcc
Confidence 4688998851 2799999999999999999999999999999853 2 221 23443
Q ss_pred -----EEEcCeeCCC----cHH-------Hh---------hcceEEEcCCCCCC----------------------C---
Q 007178 354 -----AYVQGLDIRT----DMD-------RI---------YTSMGVCPQEDLLW----------------------E--- 383 (614)
Q Consensus 354 -----i~i~G~~i~~----~~~-------~~---------~~~ig~~~Q~~~l~----------------------~--- 383 (614)
|.++|.++.. ... .+ .+..||.||...+. +
T Consensus 715 ~~~~~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~ 794 (993)
T 2ygr_A 715 YLDKLVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVY 794 (993)
T ss_dssp TCSEEECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEE
T ss_pred ccceEEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccce
Confidence 4455555421 110 11 13468888854321 1
Q ss_pred -----------------------------CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChh
Q 007178 384 -----------------------------TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG 434 (614)
Q Consensus 384 -----------------------------~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG 434 (614)
.+|+.|++.++... .. .++..++++.+||.. ...++++.+||||
T Consensus 795 ~~ce~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~~-----~~-~~~~~~~L~~lgL~~-~~l~~~~~~LSGG 867 (993)
T 2ygr_A 795 VPCEVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPI-----AG-VHRYLRTLVDVGLGY-VRLGQPAPTLSGG 867 (993)
T ss_dssp EECTTTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTTC-----HH-HHHHHHHHHHTTGGG-SBTTCCGGGSCHH
T ss_pred eeehhccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhcc-----hH-HHHHHHHHHHcCCCc-ccccCccccCCHH
Confidence 36788888775432 11 234578999999962 2578999999999
Q ss_pred HHHHHHHHHHHhCCC---CEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhCCEEEEE------eC
Q 007178 435 MKRRLSVAISLIGNP---KVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF------VD 504 (614)
Q Consensus 435 ~kqrl~ia~al~~~p---~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~dri~il------~~ 504 (614)
|||||+||+||+.+| +++||||||+|||+.+++.++++|+++ ++|.|||++|||++++. .||||++| ++
T Consensus 868 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~-~aDrIivL~p~gg~~~ 946 (993)
T 2ygr_A 868 EAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIK-TSDWIIDLGPEGGAGG 946 (993)
T ss_dssp HHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEEEEESSSTTSC
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH-hCCEEEEECCCcCCCC
Confidence 999999999999865 999999999999999999999999986 46999999999999985 79999999 68
Q ss_pred CEEEEEcCHHHHHHh
Q 007178 505 GSLQCIGNPKELKAR 519 (614)
Q Consensus 505 G~l~~~g~~~~l~~~ 519 (614)
|++++.|+++++.+.
T Consensus 947 G~Iv~~G~~~el~~~ 961 (993)
T 2ygr_A 947 GTVVAQGTPEDVAAV 961 (993)
T ss_dssp SEEEEEECHHHHHHC
T ss_pred CEEEEecCHHHHHhC
Confidence 999999999998764
No 64
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.9e-36 Score=329.11 Aligned_cols=197 Identities=13% Similarity=0.104 Sum_probs=165.5
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcc-E-EEEcCeeCCCcHH
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG-T-AYVQGLDIRTDMD 366 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG-~-i~i~G~~i~~~~~ 366 (614)
.++++++|++|.|+ ++||++++||+++|+||||||||||+|+|+|+.+|++| + |+++|.
T Consensus 116 ~~mi~~~nl~~~y~------------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~------- 176 (460)
T 2npi_A 116 HTMKYIYNLHFMLE------------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD------- 176 (460)
T ss_dssp CTHHHHHHHHHHHH------------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC-------
T ss_pred cchhhhhhhhehhh------------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC-------
Confidence 34678889998883 58999999999999999999999999999999999999 9 999982
Q ss_pred HhhcceEEEcCCCC---CCCCCCHHHHHHHHhhh-cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHH
Q 007178 367 RIYTSMGVCPQEDL---LWETLTGREHLLFYGRL-KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 442 (614)
Q Consensus 367 ~~~~~ig~~~Q~~~---l~~~lTv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia 442 (614)
.++.+||+||+.. +.+.+|++||+ ++... ++.. .++++.++++.+|+.+ ..+ +.+||||||||+++|
T Consensus 177 -~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~---~~~~~~~ll~~~gl~~--~~~--~~~LSgGq~qrlalA 247 (460)
T 2npi_A 177 -PQQPIFTVPGCISATPISDILDAQLPT-WGQSLTSGAT---LLHNKQPMVKNFGLER--INE--NKDLYLECISQLGQV 247 (460)
T ss_dssp -TTSCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCC---SSCCBCCEECCCCSSS--GGG--CHHHHHHHHHHHHHH
T ss_pred -ccCCeeeeccchhhcccccccchhhhh-cccccccCcc---hHHHHHHHHHHhCCCc--ccc--hhhhhHHHHHHHHHH
Confidence 2577999999985 34567999998 54432 2211 1234567888899963 444 889999999999999
Q ss_pred HH--HhCCCCE----EEEeC-CCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHH------HHHhhCCE-----EEEEe-
Q 007178 443 IS--LIGNPKV----VYMDE-PSTGLDPASRNNLWNVVKRAKQGRAIILTTHSME------EAEALCDR-----LGIFV- 503 (614)
Q Consensus 443 ~a--l~~~p~v----llLDE-PtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~------e~~~l~dr-----i~il~- 503 (614)
|| |+.+|++ +|||| ||+|||+. ++.+.+++++. |+|+|++||+.+ +++.+||| |++|+
T Consensus 248 ra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k 324 (460)
T 2npi_A 248 VGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPK 324 (460)
T ss_dssp HHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECC
T ss_pred HHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeC
Confidence 99 9999999 99999 99999999 77777776654 778999999988 88899999 99999
Q ss_pred CCEEEEEcCHHHHH
Q 007178 504 DGSLQCIGNPKELK 517 (614)
Q Consensus 504 ~G~l~~~g~~~~l~ 517 (614)
+|+++ .|+++++.
T Consensus 325 ~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 325 LDGVS-AVDDVYKR 337 (460)
T ss_dssp CTTCC-CCCHHHHH
T ss_pred CCcEE-ECCHHHHh
Confidence 99999 99998774
No 65
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.97 E-value=6.8e-31 Score=284.37 Aligned_cols=197 Identities=18% Similarity=0.217 Sum_probs=150.7
Q ss_pred ceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC--------------------------------------CCcc
Q 007178 311 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR--------------------------------------TTSG 352 (614)
Q Consensus 311 ~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~--------------------------------------p~sG 352 (614)
.+++++||++.+| +++|+||||||||||+++|.++.. +.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 3899999999999 999999999999999999977664 4578
Q ss_pred EEEEcCeeCCC-cHHHhhc-ceEEEcCCCCCCCCCCHHHHHHHHhhhcCC----------------------C-------
Q 007178 353 TAYVQGLDIRT-DMDRIYT-SMGVCPQEDLLWETLTGREHLLFYGRLKNL----------------------K------- 401 (614)
Q Consensus 353 ~i~i~G~~i~~-~~~~~~~-~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~----------------------~------- 401 (614)
+++++|+++.. ....+.+ .+++++|++.++.. +..++..+.-..... .
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 99999999864 2333444 48999999877653 555555443221100 0
Q ss_pred -------------------------------chhHHHHHHHHHHHcCCCCCCc---------------------cc----
Q 007178 402 -------------------------------GPALTQAVEESLKSVNLFHGGV---------------------AD---- 425 (614)
Q Consensus 402 -------------------------------~~~~~~~~~~~l~~~~L~~~~~---------------------~~---- 425 (614)
.+...+.+.+.++.+++..... ..
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 0112344556667776642000 00
Q ss_pred ---ccCCC-CChhHHHHHHHHHHHhCCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEE
Q 007178 426 ---KQAGK-YSGGMKRRLSVAISLIGNP--KVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRL 499 (614)
Q Consensus 426 ---~~~~~-LSgG~kqrl~ia~al~~~p--~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri 499 (614)
+++.. ||||||||++||++|+.+| ++|||||||+|||+..++.+.+.|+++.+|+|||++||+++.+ ..|||+
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~-~~~d~i 365 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIA-ARAHHH 365 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEE
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH-hhcCeE
Confidence 23333 6999999999999999999 9999999999999999999999999987899999999999876 479999
Q ss_pred EEE----eCCEEEEE
Q 007178 500 GIF----VDGSLQCI 510 (614)
Q Consensus 500 ~il----~~G~l~~~ 510 (614)
++| ++|+++..
T Consensus 366 ~~l~k~~~~G~~~~~ 380 (415)
T 4aby_A 366 YKVEKQVEDGRTVSH 380 (415)
T ss_dssp EEEEEEEETTEEEEE
T ss_pred EEEEEeccCCceEEE
Confidence 999 99988754
No 66
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.96 E-value=4.4e-32 Score=267.29 Aligned_cols=147 Identities=15% Similarity=0.183 Sum_probs=105.4
Q ss_pred ccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHH
Q 007178 309 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 388 (614)
Q Consensus 309 ~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~ 388 (614)
++.+|+|+ ++||+++|+||||||||||+|+|+|+ +|++|+|. +.++.......++.+||+||++ +
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~~~~~~~~~ig~v~q~~--------~ 76 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTRPAVEAGEKLGFLPGTL--------N 76 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEECSCCTTCCCCSSCC-----------
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecCCchhhhcceEEecCCH--------H
Confidence 36799995 89999999999999999999999999 99999994 3333222223467899999986 4
Q ss_pred HHH-HHH----hhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCH
Q 007178 389 EHL-LFY----GRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDP 463 (614)
Q Consensus 389 e~l-~~~----~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~ 463 (614)
||+ .+. ..+..... .++++++++. ++ |||||++|||||+.+|++|||||||+|
T Consensus 77 enl~~~~~~~~~~~~~~~~---~~~~~~~l~~-gl---------------Gq~qrv~lAraL~~~p~lllLDEPts~--- 134 (208)
T 3b85_A 77 EKIDPYLRPLHDALRDMVE---PEVIPKLMEA-GI---------------VEVAPLAYMRGRTLNDAFVILDEAQNT--- 134 (208)
T ss_dssp ---CTTTHHHHHHHTTTSC---TTHHHHHHHT-TS---------------EEEEEGGGGTTCCBCSEEEEECSGGGC---
T ss_pred HHHHHHHHHHHHHHHHhcc---HHHHHHHHHh-CC---------------chHHHHHHHHHHhcCCCEEEEeCCccc---
Confidence 454 221 11211111 2345555554 22 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCceEEEEcCCHHHHHh
Q 007178 464 ASRNNLWNVVKRAKQGRAIILTTHSMEEAEA 494 (614)
Q Consensus 464 ~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~ 494 (614)
+++.++++|+++++|+||| +|||+++++.
T Consensus 135 -~~~~l~~~l~~l~~g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 135 -TPAQMKMFLTRLGFGSKMV-VTGDITQVDL 163 (208)
T ss_dssp -CHHHHHHHHTTBCTTCEEE-EEEC------
T ss_pred -cHHHHHHHHHHhcCCCEEE-EECCHHHHhC
Confidence 8999999998875689999 9999987764
No 67
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.95 E-value=1.3e-27 Score=255.06 Aligned_cols=84 Identities=23% Similarity=0.381 Sum_probs=78.0
Q ss_pred cccCCCCChhHHHHHHHHHHHh------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCC
Q 007178 425 DKQAGKYSGGMKRRLSVAISLI------GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCD 497 (614)
Q Consensus 425 ~~~~~~LSgG~kqrl~ia~al~------~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~d 497 (614)
++++.+||||||||++||+||+ ++|+++||||||+||||.+++.+++.|++++ +|+|||++||++++ ...||
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d 352 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFD 352 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCS
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCC
Confidence 5788999999999999999999 8999999999999999999999999999864 69999999999998 56799
Q ss_pred EEEEEeCCEEEE
Q 007178 498 RLGIFVDGSLQC 509 (614)
Q Consensus 498 ri~il~~G~l~~ 509 (614)
|+++|++|++++
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999875
No 68
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.95 E-value=2.5e-27 Score=248.57 Aligned_cols=191 Identities=18% Similarity=0.207 Sum_probs=130.7
Q ss_pred eeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCC-----------------------------------------------
Q 007178 315 GLSLALPSGECFGMLGPNGAGKTTFISMMIGIT----------------------------------------------- 347 (614)
Q Consensus 315 ~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~----------------------------------------------- 347 (614)
++++++.+| +++|+|||||||||++++|..++
T Consensus 17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~r 95 (322)
T 1e69_A 17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVAR 95 (322)
T ss_dssp CEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEEE
T ss_pred CeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEEE
Confidence 568888899 99999999999999999998543
Q ss_pred ---CCCccEEEEcCeeCCC-cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhh--------h----cC-CCchhHH----
Q 007178 348 ---RTTSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGR--------L----KN-LKGPALT---- 406 (614)
Q Consensus 348 ---~p~sG~i~i~G~~i~~-~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~--------~----~~-~~~~~~~---- 406 (614)
++.+|.++++|.++.. +.......+|+.||+..+...-++.+++..... . .. ...+...
T Consensus 96 ~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~~ 175 (322)
T 1e69_A 96 ELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESFN 175 (322)
T ss_dssp EEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHHH
T ss_pred EEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3345788999988742 234445567877776655432233333321100 0 00 0000011
Q ss_pred -----------------HHHHHHHHHcCCCC----CCcccccCCCCChhHHHHHHHHHHHh----CCCCEEEEeCCCCCC
Q 007178 407 -----------------QAVEESLKSVNLFH----GGVADKQAGKYSGGMKRRLSVAISLI----GNPKVVYMDEPSTGL 461 (614)
Q Consensus 407 -----------------~~~~~~l~~~~L~~----~~~~~~~~~~LSgG~kqrl~ia~al~----~~p~vllLDEPtsgL 461 (614)
.+..+.++. |+.. .+..++++.+||||||||++||+||+ .+|+++||||||++|
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~l~~-g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 176 RFISLLFFGGEGRLNIVSEAKSILDA-GFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHTSCEEEC---------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHhcCCceEEEEeeccccccccC-CeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 111222332 2210 12457788999999999999999997 789999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEE--EEEeCCEEE
Q 007178 462 DPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRL--GIFVDGSLQ 508 (614)
Q Consensus 462 D~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri--~il~~G~l~ 508 (614)
|+..++.+++.|++..+|++||++||+++ +...||++ ++|.+|+-.
T Consensus 255 D~~~~~~l~~~l~~~~~~~~vi~~tH~~~-~~~~~d~~~~v~~~~g~s~ 302 (322)
T 1e69_A 255 DDYNAERFKRLLKENSKHTQFIVITHNKI-VMEAADLLHGVTMVNGVSA 302 (322)
T ss_dssp CHHHHHHHHHHHHHHTTTSEEEEECCCTT-GGGGCSEEEEEEESSSCEE
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEECCHH-HHhhCceEEEEEEeCCEEE
Confidence 99999999999998877899999999964 56689987 778888543
No 69
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.94 E-value=2.1e-30 Score=279.33 Aligned_cols=174 Identities=13% Similarity=0.130 Sum_probs=143.8
Q ss_pred cceeeeeeEEEeCCc--------------------EEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhh
Q 007178 310 KVAVNGLSLALPSGE--------------------CFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 369 (614)
Q Consensus 310 ~~~l~~isl~i~~Ge--------------------i~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~ 369 (614)
+.+++|+|+++++|+ ++||+||||||||||+|+|+|+.+|++|+|.++|.++. +
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------~ 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------M 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----------C
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc------e
Confidence 579999999999999 99999999999999999999999999999999997652 1
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChh--HHHHHHHHHHHhC
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG--MKRRLSVAISLIG 447 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG--~kqrl~ia~al~~ 447 (614)
.++++|++ .++.+|+.|++.+.. . +.+++++++.+++.+ . +..+. ||+| ||||+.+|+||++
T Consensus 110 --~~~v~q~~-~~~~ltv~D~~g~~~-----~----~~~~~~~L~~~~L~~--~-~~~~~-lS~G~~~kqrv~la~aL~~ 173 (413)
T 1tq4_A 110 --ERHPYKHP-NIPNVVFWDLPGIGS-----T----NFPPDTYLEKMKFYE--Y-DFFII-ISATRFKKNDIDIAKAISM 173 (413)
T ss_dssp --CCEEEECS-SCTTEEEEECCCGGG-----S----SCCHHHHHHHTTGGG--C-SEEEE-EESSCCCHHHHHHHHHHHH
T ss_pred --eEEecccc-ccCCeeehHhhcccc-----h----HHHHHHHHHHcCCCc--c-CCeEE-eCCCCccHHHHHHHHHHHh
Confidence 27899985 577889999875431 1 235788999999863 3 33344 9999 9999999999999
Q ss_pred ----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHh------cC----CceEEEEcCCHHH--HHhhCCEEE-EEeC
Q 007178 448 ----------NPKVVYMDEPSTGLDPASRNNLWNVVKRA------KQ----GRAIILTTHSMEE--AEALCDRLG-IFVD 504 (614)
Q Consensus 448 ----------~p~vllLDEPtsgLD~~~~~~i~~~l~~~------~~----g~tIil~TH~~~e--~~~l~dri~-il~~ 504 (614)
+|++++|||||+||||.+++++++.|++. +. ..+|+++||++++ ++++||++. .|..
T Consensus 174 ~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 174 MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 99999999999999999999999999875 22 3679999999998 999999984 3433
Q ss_pred C
Q 007178 505 G 505 (614)
Q Consensus 505 G 505 (614)
|
T Consensus 254 g 254 (413)
T 1tq4_A 254 Y 254 (413)
T ss_dssp G
T ss_pred c
Confidence 3
No 70
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.94 E-value=8.2e-28 Score=229.27 Aligned_cols=146 Identities=18% Similarity=0.210 Sum_probs=104.4
Q ss_pred eeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCC-CCCCHHHHHHH
Q 007178 315 GLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLW-ETLTGREHLLF 393 (614)
Q Consensus 315 ~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~-~~lTv~e~l~~ 393 (614)
|+||++++||+++|+||||||||||+|++.+ |...++ .+.++ |+++|++.-. ..-++++.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~~-------~d~~~---g~~~~~~~~~~~~~~~~~~~~- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVIS-------SDFCR---GLMSDDENDQTVTGAAFDVLH- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEEE-------HHHHH---HHHCSSTTCGGGHHHHHHHHH-
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEEc-------cHHHH---HHhcCcccchhhHHHHHHHHH-
Confidence 6899999999999999999999999999653 221121 12222 6778764210 0001122111
Q ss_pred HhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHH---------
Q 007178 394 YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA--------- 464 (614)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~--------- 464 (614)
...... ...+... ..+ .....|||||||++||+|++.+|++++|||||+|||+.
T Consensus 64 -------------~~~~~~-~~~g~~~--~~~-~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~ 126 (171)
T 4gp7_A 64 -------------YIVSKR-LQLGKLT--VVD-ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQV 126 (171)
T ss_dssp -------------HHHHHH-HHTTCCE--EEE-SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCC
T ss_pred -------------HHHHHH-HhCCCeE--EEE-CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCC
Confidence 112222 2345531 233 44556999999999999999999999999999999999
Q ss_pred -------HHHHHHHHHHHh-cCCceEEEEcCCHHHHHh
Q 007178 465 -------SRNNLWNVVKRA-KQGRAIILTTHSMEEAEA 494 (614)
Q Consensus 465 -------~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~ 494 (614)
.++++++.++++ ++|.|+|++||++++++.
T Consensus 127 ~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~ 164 (171)
T 4gp7_A 127 EEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEE 164 (171)
T ss_dssp CHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHH
T ss_pred CHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhh
Confidence 568889998775 459999999999999986
No 71
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.94 E-value=1.1e-30 Score=256.61 Aligned_cols=176 Identities=11% Similarity=0.071 Sum_probs=128.7
Q ss_pred ccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHHhhcceEEEcCCCCCCCCCCH
Q 007178 309 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTG 387 (614)
Q Consensus 309 ~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~~~~~ig~~~Q~~~l~~~lTv 387 (614)
...+++| .+|++||+++|+||||||||||+|+|+|+++. +.+++..... .....++.+||+||++.+++.+|+
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 81 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLID 81 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcccccccCCcccccCCCeeEecCHHHHHHHHh
Confidence 3568888 79999999999999999999999999999863 4444322111 112235679999999888888888
Q ss_pred HHHHHHH----h--hhcCCCchhHHHHHHHH------HHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEe
Q 007178 388 REHLLFY----G--RLKNLKGPALTQAVEES------LKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMD 455 (614)
Q Consensus 388 ~e~l~~~----~--~~~~~~~~~~~~~~~~~------l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLD 455 (614)
.|++..+ . ..++.+.++.++++++. ++.+|+. ..+++++++|| ||+.+|++++||
T Consensus 82 ~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~lS-----------~l~~~p~~~~LD 148 (207)
T 1znw_A 82 QGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGAR--AIKKTMPEAVT-----------VFLAPPSWQDLQ 148 (207)
T ss_dssp TTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHH--HHHHHCTTSEE-----------EEEECSCHHHHH
T ss_pred cCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHH--HHHHhcCCcEE-----------EEEECCCHHHHH
Confidence 8876432 2 23344444555666665 6666774 36788888898 899999999999
Q ss_pred CCCCCC----CHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHhhCCEEEEEe
Q 007178 456 EPSTGL----DPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFV 503 (614)
Q Consensus 456 EPtsgL----D~~~~~~i~~~l~~~~--~g~tIil~TH~~~e~~~l~dri~il~ 503 (614)
|||+|+ |+..++++++.+++++ +|.|+|++|||++++..+||||++|.
T Consensus 149 ep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 149 ARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp HHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 999998 8889999999998863 48999999999999999999999884
No 72
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.93 E-value=8.1e-28 Score=231.14 Aligned_cols=147 Identities=11% Similarity=0.064 Sum_probs=111.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcH-HHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCch
Q 007178 325 CFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM-DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGP 403 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~-~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~ 403 (614)
.++|+||||||||||+|+|+|++. |.++|.+..... ...++.+||++|+. ++.+++ .+.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~--~~~~------ 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI--FSSK------ 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET------TCCEEE--EEET------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC------cHHHHH--HHhh------
Confidence 689999999999999999999985 566776542211 13467899999976 222332 1111
Q ss_pred hHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH-----HhCCCCEEEEeC--CCCCCCHHHHHHHHHHHHHh
Q 007178 404 ALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS-----LIGNPKVVYMDE--PSTGLDPASRNNLWNVVKRA 476 (614)
Q Consensus 404 ~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~a-----l~~~p~vllLDE--PtsgLD~~~~~~i~~~l~~~ 476 (614)
+.......++++.+||||||||+++|+| ++.+|++++||| ||+++|+..++.+++.+++
T Consensus 63 -------------~~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~- 128 (178)
T 1ye8_A 63 -------------FFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD- 128 (178)
T ss_dssp -------------TCCCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC-
T ss_pred -------------cCCccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc-
Confidence 1110125688899999999999999996 999999999999 9999999999999998865
Q ss_pred cCCceEEEEc---CCHHHHHhhCCEEEEEeCCEEEE
Q 007178 477 KQGRAIILTT---HSMEEAEALCDRLGIFVDGSLQC 509 (614)
Q Consensus 477 ~~g~tIil~T---H~~~e~~~l~dri~il~~G~l~~ 509 (614)
.+.|+|++| |++++++.+||| .+|++..
T Consensus 129 -~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 129 -PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp -TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred -CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 467788887 599999999998 5667665
No 73
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.92 E-value=4.9e-27 Score=244.03 Aligned_cols=175 Identities=14% Similarity=0.107 Sum_probs=142.8
Q ss_pred eeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcH-----HHh--hcceEEEcCCCC-CCC
Q 007178 312 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM-----DRI--YTSMGVCPQEDL-LWE 383 (614)
Q Consensus 312 ~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~-----~~~--~~~ig~~~Q~~~-l~~ 383 (614)
+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.|+.... ..+ +.+++|++|++. +++
T Consensus 89 ~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~ 168 (302)
T 3b9q_A 89 SKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 168 (302)
T ss_dssp CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCH
T ss_pred cccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCH
Confidence 456789999999999999999999999999999999999999999999985421 122 457999999988 889
Q ss_pred CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCC--EEEEeCCCCCC
Q 007178 384 TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK--VVYMDEPSTGL 461 (614)
Q Consensus 384 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~--vllLDEPtsgL 461 (614)
.+|++|++.+... .+.. ..+++.+|+.+ ..++++.+|| |||+++|||++.+|+ +++|| ||+|+
T Consensus 169 ~~~v~e~l~~~~~-~~~d--------~~lldt~gl~~--~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsgl 233 (302)
T 3b9q_A 169 ATVLSKAVKRGKE-EGYD--------VVLCDTSGRLH--TNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGL 233 (302)
T ss_dssp HHHHHHHHHHHHH-TTCS--------EEEECCCCCSS--CCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGG
T ss_pred HHHHHHHHHHHHH-cCCc--------chHHhcCCCCc--chhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCc
Confidence 9999999987532 2211 13567788863 6788899999 999999999999999 99999 99999
Q ss_pred CHHHHHHHHHHHHHh--cCCceEEEEcC---------CHHHHHhhCCEEEEEeCCEE
Q 007178 462 DPASRNNLWNVVKRA--KQGRAIILTTH---------SMEEAEALCDRLGIFVDGSL 507 (614)
Q Consensus 462 D~~~~~~i~~~l~~~--~~g~tIil~TH---------~~~e~~~l~dri~il~~G~l 507 (614)
|+..+. ++. ..|.|+|++|| .++.+...+++|.++..|+.
T Consensus 234 D~~~~~------~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 234 NMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp GGHHHH------HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CHHHHH------HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 998652 333 34899999999 56677778889999999964
No 74
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.91 E-value=1.1e-27 Score=260.80 Aligned_cols=196 Identities=19% Similarity=0.268 Sum_probs=159.6
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCe---eCCCc--
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGL---DIRTD-- 364 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~---~i~~~-- 364 (614)
+.++++|+++.|+. .+.|++++ |++.+||+++|+||||||||||+++|+|+.+|++|.|.++|+ ++...
T Consensus 130 ~~l~~~~v~~~~~t-----g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~ 203 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT-----GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIE 203 (438)
T ss_dssp CTTTSCCCCSBCCC-----SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHH
T ss_pred CceEEeccceecCC-----CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHH
Confidence 35788999999963 25799999 999999999999999999999999999999999999999998 44321
Q ss_pred ----HHHhhcceEEEcCC-CCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHH
Q 007178 365 ----MDRIYTSMGVCPQE-DLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRL 439 (614)
Q Consensus 365 ----~~~~~~~ig~~~Q~-~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl 439 (614)
....++.++|++|+ ..+++.+|+.+|+.+.+...+... +.+. ...+ ....||+|| ||+
T Consensus 204 ~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~-----------~~v~----~~ld-~l~~lS~g~-qrv 266 (438)
T 2dpy_A 204 NILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRG-----------QHVL----LIMD-SLTRYAMAQ-REI 266 (438)
T ss_dssp TTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTT-----------CEEE----EEEE-CHHHHHHHH-HHH
T ss_pred hhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCC-----------CCHH----HHHH-hHHHHHHHH-HHH
Confidence 23466789999995 566778899999988654321100 0010 1222 266799999 999
Q ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-----Cc-----eEEEEcCCHHHHHhhCCEEEEEeCCEEEE
Q 007178 440 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ-----GR-----AIILTTHSMEEAEALCDRLGIFVDGSLQC 509 (614)
Q Consensus 440 ~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~-----g~-----tIil~TH~~~e~~~l~dri~il~~G~l~~ 509 (614)
++| +++|++ |+||||..+..+.++++++.+ |+ ||+++|||++ +.+||++++|.+|+++.
T Consensus 267 slA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Ivl 335 (438)
T 2dpy_A 267 ALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIVL 335 (438)
T ss_dssp HHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEEE
T ss_pred HHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEEE
Confidence 999 888988 999999999999999988632 64 9999999999 67899999999999999
Q ss_pred EcCHHHHHHh
Q 007178 510 IGNPKELKAR 519 (614)
Q Consensus 510 ~g~~~~l~~~ 519 (614)
.|++.++...
T Consensus 336 ~~~~~~~~~~ 345 (438)
T 2dpy_A 336 SRRLAEAGHY 345 (438)
T ss_dssp CHHHHHTTCS
T ss_pred eCCHHHccCC
Confidence 9999887553
No 75
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.91 E-value=3e-29 Score=260.02 Aligned_cols=166 Identities=14% Similarity=0.186 Sum_probs=132.5
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcc
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 371 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ 371 (614)
|+++||++.|+ +.+|+|+||+|++|++++|+||||||||||+++|+|++ +|+|.
T Consensus 102 i~~~~vs~~y~-------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~---------------- 155 (305)
T 2v9p_A 102 FNYQNIELITF-------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL---------------- 155 (305)
T ss_dssp HHHTTCCHHHH-------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEE----------------
T ss_pred EEEEEEEEEcC-------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEE----------------
Confidence 66789999995 36999999999999999999999999999999999999 89883
Q ss_pred eEEEcCCCCCCCCCCHHH-HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCC
Q 007178 372 MGVCPQEDLLWETLTGRE-HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 450 (614)
Q Consensus 372 ig~~~Q~~~l~~~lTv~e-~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~ 450 (614)
+|++|++.+|+. |++| |+.+... .+ +.+.+.++.+ |.+ ..+ ..+|||||||| |||++.+|+
T Consensus 156 -~~v~q~~~lf~~-ti~~~ni~~~~~---~~-----~~~~~~i~~~-L~~--gld--g~~LSgGqkQR---ARAll~~p~ 217 (305)
T 2v9p_A 156 -SFANHKSHFWLA-SLADTRAALVDD---AT-----HACWRYFDTY-LRN--ALD--GYPVSIDRKHK---AAVQIKAPP 217 (305)
T ss_dssp -CGGGTTSGGGGG-GGTTCSCEEEEE---EC-----HHHHHHHHHT-TTG--GGG--TCCEECCCSSC---CCCEECCCC
T ss_pred -EEecCccccccc-cHHHHhhccCcc---cc-----HHHHHHHHHH-hHc--cCC--ccCcCHHHHHH---HHHHhCCCC
Confidence 467888888775 7776 7765311 11 1445566664 432 334 78999999999 999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHhc
Q 007178 451 VVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 520 (614)
Q Consensus 451 vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 520 (614)
+|| |++||+.+++.+.. .||+++.+ ..|||| +|++|++++.|++++++..|
T Consensus 218 iLl----Ts~LD~~~~~~i~~-------------ltH~~~~~-~~aD~i-vl~~G~iv~~g~~~el~~~y 268 (305)
T 2v9p_A 218 LLV----TSNIDVQAEDRYLY-------------LHSRVQTF-RFEQPC-TDESGEQPFNITDADWKSFF 268 (305)
T ss_dssp EEE----EESSCSTTCGGGGG-------------GTTTEEEE-ECCCCC-CCC---CCCCCCHHHHHHHH
T ss_pred EEE----ECCCCHHHHHHHHH-------------HhCCHHHH-HhCCEE-EEeCCEEEEeCCHHHHHHHH
Confidence 999 99999999988862 18998875 579999 99999999999999995443
No 76
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.90 E-value=1.8e-25 Score=236.82 Aligned_cols=173 Identities=14% Similarity=0.108 Sum_probs=142.6
Q ss_pred eeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcH-----HH--hhcceEEEcCCCC-CCCCC
Q 007178 314 NGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM-----DR--IYTSMGVCPQEDL-LWETL 385 (614)
Q Consensus 314 ~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~-----~~--~~~~ig~~~Q~~~-l~~~l 385 (614)
+.+||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.|+.... .. .+.+++|++|++. +++.+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 4688999999999999999999999999999999999999999999985421 11 2457999999988 88899
Q ss_pred CHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCC--EEEEeCCCCCCCH
Q 007178 386 TGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK--VVYMDEPSTGLDP 463 (614)
Q Consensus 386 Tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~--vllLDEPtsgLD~ 463 (614)
|++|++.+... ++.. ..+++.+|+.+ ..++++.+|| |||++||||++.+|+ +++|| ||+|+|+
T Consensus 228 tv~e~l~~~~~-~~~d--------~~lldt~Gl~~--~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~ 292 (359)
T 2og2_A 228 VLSKAVKRGKE-EGYD--------VVLCDTSGRLH--TNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNM 292 (359)
T ss_dssp HHHHHHHHHHH-TTCS--------EEEEECCCCSS--CCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGG
T ss_pred hHHHHHHHHHh-CCCH--------HHHHHhcCCCh--hhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCH
Confidence 99999987532 2211 13567788863 6788899999 999999999999999 99999 9999999
Q ss_pred HHHHHHHHHHHHh--cCCceEEEEcC---------CHHHHHhhCCEEEEEeCCEE
Q 007178 464 ASRNNLWNVVKRA--KQGRAIILTTH---------SMEEAEALCDRLGIFVDGSL 507 (614)
Q Consensus 464 ~~~~~i~~~l~~~--~~g~tIil~TH---------~~~e~~~l~dri~il~~G~l 507 (614)
..+. ++. ..|.|+|++|| .++.+..+++.|..+..|+.
T Consensus 293 ~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 293 LPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp HHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred HHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 8663 232 34899999999 45667777888999988863
No 77
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.89 E-value=6.2e-26 Score=239.98 Aligned_cols=196 Identities=17% Similarity=0.263 Sum_probs=147.8
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC------
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT------ 363 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~------ 363 (614)
++++.++++|.|+. .+.|++++ |+|.+||++||+||||||||||+++|+|+.+|+.|.+.+.|++...
T Consensus 44 ~~i~~~~l~~~~~t-----g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~ 117 (347)
T 2obl_A 44 DPLLRQVIDQPFIL-----GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLA 117 (347)
T ss_dssp CSTTCCCCCSEECC-----SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHT
T ss_pred CCeeecccceecCC-----CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHH
Confidence 35788999999973 25799999 9999999999999999999999999999999999999999976321
Q ss_pred --cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHH
Q 007178 364 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSV 441 (614)
Q Consensus 364 --~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~i 441 (614)
.....++.+++++|.+. +..+++.-.... ..+.+.+...+-.- -..-..+..||+|| ||+++
T Consensus 118 ~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~~~---------~~~ae~~~~~~~~v-l~~ld~~~~lS~g~-r~v~l 181 (347)
T 2obl_A 118 LLPQSTLSKCVLVVTTSDR-----PALERMKAAFTA---------TTIAEYFRDQGKNV-LLMMDSVTRYARAA-RDVGL 181 (347)
T ss_dssp TSCHHHHTTEEEEEECTTS-----CHHHHHHHHHHH---------HHHHHHHHTTTCEE-EEEEETHHHHHHHH-HHHHH
T ss_pred hhhhhhhhceEEEEECCCC-----CHHHHHHHHHHH---------HHHHHHHHhccccH-HHHHhhHHHHHHHH-HHHHH
Confidence 11123456888888642 333433221100 01112211111100 00114678899999 89999
Q ss_pred HHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc---CCc-----eEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCH
Q 007178 442 AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK---QGR-----AIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 513 (614)
Q Consensus 442 a~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~---~g~-----tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~ 513 (614)
| +++|++ |+|+||..+..++++++++. +|. ||+++|||++ +.+||++.+|.+|+++.+|++
T Consensus 182 a---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Ivl~~~l 250 (347)
T 2obl_A 182 A---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIVLTREL 250 (347)
T ss_dssp H---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEEBCHHH
T ss_pred H---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEEEeCCH
Confidence 9 688887 99999999999999999863 377 9999999999 678999999999999999999
Q ss_pred HHHHH
Q 007178 514 KELKA 518 (614)
Q Consensus 514 ~~l~~ 518 (614)
+++..
T Consensus 251 ~~~~~ 255 (347)
T 2obl_A 251 AEENH 255 (347)
T ss_dssp HTTTC
T ss_pred HHcCC
Confidence 88753
No 78
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.89 E-value=7.1e-28 Score=238.85 Aligned_cols=177 Identities=8% Similarity=0.064 Sum_probs=122.8
Q ss_pred cceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc--HHHhhcceEEEcCCCCCCCCCCH
Q 007178 310 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDRIYTSMGVCPQEDLLWETLTG 387 (614)
Q Consensus 310 ~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~--~~~~~~~ig~~~Q~~~l~~~lTv 387 (614)
+..|+|+||++++|++++|+||||||||||+++|+|++ | |+|.+ |.++.+. ....++.++|+||++.+|+.++.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 85 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLK 85 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhh
Confidence 45899999999999999999999999999999999999 6 99999 8776432 12245679999999877665431
Q ss_pred -HHHHH---HHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHH-----HHHHhCCCCEEEEeCCC
Q 007178 388 -REHLL---FYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSV-----AISLIGNPKVVYMDEPS 458 (614)
Q Consensus 388 -~e~l~---~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~i-----a~al~~~p~vllLDEPt 458 (614)
.+++. +....++.+ ...++++++...+. ..+ .+||||||||+++ |++++.+|++++|||||
T Consensus 86 ~~~~l~~~~~~~~~~g~~----~~~i~~~l~~~~~~---il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~ 155 (218)
T 1z6g_A 86 NEDFLEYDNYANNFYGTL----KSEYDKAKEQNKIC---LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRL 155 (218)
T ss_dssp TTCEEEEEEETTEEEEEE----HHHHHHHHHTTCEE---EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHH
T ss_pred ccchhhhhhcccccCCCc----HHHHHHHHhCCCcE---EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHH
Confidence 11211 111222221 23566777765432 233 5799999999999 89999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhc--------CCceEEEEcCCHHHHHhhCCEEE
Q 007178 459 TGLDPASRNNLWNVVKRAK--------QGRAIILTTHSMEEAEALCDRLG 500 (614)
Q Consensus 459 sgLD~~~~~~i~~~l~~~~--------~g~tIil~TH~~~e~~~l~dri~ 500 (614)
+++|..+.+.+.+.+.+.. ++...|+++|+++++...+++++
T Consensus 156 ~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii 205 (218)
T 1z6g_A 156 LTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYL 205 (218)
T ss_dssp HHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHH
Confidence 9999998888888876542 45677888888888888777664
No 79
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.89 E-value=9.1e-26 Score=230.93 Aligned_cols=149 Identities=13% Similarity=0.138 Sum_probs=101.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchh
Q 007178 325 CFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA 404 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~ 404 (614)
.+||+||||||||||+|+|+|+.+|++|+|.++|+++... ..++.+||+||++.+++.+||.||+.++....+. +
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~--~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~---~ 78 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT--VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNE---N 78 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCC--CSCCEEEESCC----CCEEEEECCCC--CCSBCT---T
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcc--eeeeeeEEEeecCCCcCCceEEechhhhhhcccH---H
Confidence 4799999999999999999999999999999999887432 2356799999999999999999999887554331 1
Q ss_pred HHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEE
Q 007178 405 LTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIIL 484 (614)
Q Consensus 405 ~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil 484 (614)
..+.+.+.++ . .+.+..+.+||||||||+++|||++. +++||||++||||.. .++++++++..+||+
T Consensus 79 ~~~~i~~~~~----~--~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~~~vI~ 145 (270)
T 3sop_A 79 CWEPIEKYIN----E--QYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKVVNIIP 145 (270)
T ss_dssp CSHHHHHHHH----H--HHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHH----H--HHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhcCcEEE
Confidence 1233444444 1 36678888999999999999999875 999999999999987 344444433388888
Q ss_pred EcCCHHH
Q 007178 485 TTHSMEE 491 (614)
Q Consensus 485 ~TH~~~e 491 (614)
+.|..|.
T Consensus 146 Vi~K~D~ 152 (270)
T 3sop_A 146 VIAKADT 152 (270)
T ss_dssp EETTGGG
T ss_pred EEecccc
Confidence 8887663
No 80
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.89 E-value=8.2e-23 Score=216.72 Aligned_cols=86 Identities=21% Similarity=0.249 Sum_probs=79.0
Q ss_pred cccCC-CCChhHHHHHHHHHHHh---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHh
Q 007178 425 DKQAG-KYSGGMKRRLSVAISLI---------GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEA 494 (614)
Q Consensus 425 ~~~~~-~LSgG~kqrl~ia~al~---------~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~ 494 (614)
++++. .||||||||++||++|+ ++|+++||||||++||+..++.+++.+.+.. .|+|++|| +++
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT---
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc---
Confidence 55677 79999999999999999 9999999999999999999999999998864 79999999 454
Q ss_pred hCCEEEEEeCCEEEEEcCHHHH
Q 007178 495 LCDRLGIFVDGSLQCIGNPKEL 516 (614)
Q Consensus 495 l~dri~il~~G~l~~~g~~~~l 516 (614)
.||++++|++|++++.|+++++
T Consensus 333 ~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp TCSEEEEEETTEEEECCCTTTS
T ss_pred cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999998876
No 81
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.88 E-value=2.5e-26 Score=256.50 Aligned_cols=181 Identities=20% Similarity=0.216 Sum_probs=131.8
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeE-EEeCCcEEEEECCCCCcHHHHHHH--HhCCCCCCccEEEEcCeeCCCcHHH
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSL-ALPSGECFGMLGPNGAGKTTFISM--MIGITRTTSGTAYVQGLDIRTDMDR 367 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl-~i~~Gei~~LlG~NGaGKTTll~~--l~Gl~~p~sG~i~i~G~~i~~~~~~ 367 (614)
.++.+++.+..+ ...+|+|+|+ .+++||+++|+||||||||||+++ ++|+.+|++|.|+++|++......+
T Consensus 12 ~~~~~~~~~~~~------g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~ 85 (525)
T 1tf7_A 12 NSEHQAIAKMRT------MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIK 85 (525)
T ss_dssp --CCSSCCEECC------CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHH
T ss_pred CccccccccccC------CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHH
Confidence 344455655443 3679999999 999999999999999999999999 7899999999999999885333344
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhC
Q 007178 368 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 447 (614)
Q Consensus 368 ~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~ 447 (614)
.++.+||++|++...++ +.+ .... ..+ +..++++.+++. +..++.+.+||||
T Consensus 86 ~~~~~g~~~q~~~~~~~------l~~-~~~~--~~~----~~~~~l~~~~l~--~~~~~~~~~LS~g------------- 137 (525)
T 1tf7_A 86 NARSFGWDLAKLVDEGK------LFI-LDAS--PDP----EGQEVVGGFDLS--ALIERINYAIQKY------------- 137 (525)
T ss_dssp HHGGGTCCHHHHHHTTS------EEE-EECC--CCS----SCCSCCSSHHHH--HHHHHHHHHHHHH-------------
T ss_pred HHHHcCCChHHhhccCc------EEE-EecC--ccc----chhhhhcccCHH--HHHHHHHHHHHHc-------------
Confidence 55789999997543211 110 0000 000 011233334443 2445555566665
Q ss_pred CCCEEEEeCCCC-----CCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHH---------HHhhCCEEEEEeCC
Q 007178 448 NPKVVYMDEPST-----GLDPASRNNLWNVVKRAK-QGRAIILTTHSMEE---------AEALCDRLGIFVDG 505 (614)
Q Consensus 448 ~p~vllLDEPts-----gLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e---------~~~l~dri~il~~G 505 (614)
+|++++|||||+ ++|+..++.+++++++++ +|+|||++||++++ ++.+||+|++|++|
T Consensus 138 ~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 138 RARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp TCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred CCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence 588999999998 569999999999999874 59999999999998 46679999999993
No 82
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.88 E-value=7.5e-24 Score=251.13 Aligned_cols=173 Identities=16% Similarity=0.209 Sum_probs=126.4
Q ss_pred CeEEEEe-----EEEEcCCCCCCCccceeeeeeEEEeC-------CcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEc
Q 007178 290 HAIISDN-----LRKIYPGRDGNPEKVAVNGLSLALPS-------GECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQ 357 (614)
Q Consensus 290 ~~i~~~~-----l~k~y~~~~~~~~~~~l~~isl~i~~-------Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~ 357 (614)
.+++++| |++.|++ ++.+++|++|++++ |++++|+|||||||||++|++ |++.+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~-----~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~-------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG-----DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV-------- 814 (1022)
T ss_dssp CCEEEEEECCCC------C-----CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH--------
T ss_pred ceEEEEeccccEEEEEecC-----CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH--------
Confidence 4699999 9999942 35799999999987 999999999999999999999 99864
Q ss_pred CeeCCCcHHHhhcceE-EEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHH
Q 007178 358 GLDIRTDMDRIYTSMG-VCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK 436 (614)
Q Consensus 358 G~~i~~~~~~~~~~ig-~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~k 436 (614)
..++| ||||+.. .+|+.|++. ..+|+.+ ...+..+++|++|+
T Consensus 815 -----------~aqiG~~Vpq~~~---~l~v~d~I~---------------------~rig~~d--~~~~~~stf~~em~ 857 (1022)
T 2o8b_B 815 -----------MAQMGCYVPAEVC---RLTPIDRVF---------------------TRLGASD--RIMSGESTFFVELS 857 (1022)
T ss_dssp -----------HHTTTCCEESSEE---EECCCSBEE---------------------EECC-----------CHHHHHHH
T ss_pred -----------HhheeEEeccCcC---CCCHHHHHH---------------------HHcCCHH--HHhhchhhhHHHHH
Confidence 23466 9999863 456655541 1234431 33445567888887
Q ss_pred HHHHHHHHHhCCCCEEEEeCCCCCCCHHHH-HHHHHHHHHh-cC-CceEEEEcCCHHHHHhhCCEEEEEeCCEEE--EEc
Q 007178 437 RRLSVAISLIGNPKVVYMDEPSTGLDPASR-NNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQ--CIG 511 (614)
Q Consensus 437 qrl~ia~al~~~p~vllLDEPtsgLD~~~~-~~i~~~l~~~-~~-g~tIil~TH~~~e~~~l~dri~il~~G~l~--~~g 511 (614)
+ +++|++++.+|+++|||||++|+|+... ..+|++++.+ ++ |.++|++||++++++.+||++.++ +|++. ..|
T Consensus 858 ~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~ 935 (1022)
T 2o8b_B 858 E-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVEN 935 (1022)
T ss_dssp H-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC---
T ss_pred H-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEec
Confidence 6 9999999999999999999999999985 5579999886 45 899999999999999999999886 58988 456
Q ss_pred CHHH
Q 007178 512 NPKE 515 (614)
Q Consensus 512 ~~~~ 515 (614)
++++
T Consensus 936 ~~~~ 939 (1022)
T 2o8b_B 936 ECED 939 (1022)
T ss_dssp ----
T ss_pred Cccc
Confidence 5544
No 83
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.88 E-value=1.2e-23 Score=217.50 Aligned_cols=183 Identities=16% Similarity=0.114 Sum_probs=129.1
Q ss_pred cceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcc-EEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHH
Q 007178 310 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG-TAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 388 (614)
Q Consensus 310 ~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG-~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~ 388 (614)
..+|+++++.+++|++++|+||||||||||+++|+|...|++| .|.+.+.+.. ..++++++..+.|... ++..
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~--~~~~~~r~~~~~~~~~----~~~~ 95 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEES--VEETAEDLIGLHNRVR----LRQS 95 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSC--HHHHHHHHHHHHTTCC----GGGC
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCC--HHHHHHHHHHHHcCCC----hhhc
Confidence 3589999999999999999999999999999999999999988 7765544332 2334444444454432 2233
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhH-HHHHHHHHHHhCCCCEEEEeCCCC---C---C
Q 007178 389 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM-KRRLSVAISLIGNPKVVYMDEPST---G---L 461 (614)
Q Consensus 389 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~-kqrl~ia~al~~~p~vllLDEPts---g---L 461 (614)
+++... .+ +.++.++.++++++..++ ..+..+.++|.++ +||+. |+++..+|+++++||||+ + +
T Consensus 96 ~~l~~~-~~---~~~~~~~~~~~~l~~~~l----~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~ 166 (296)
T 1cr0_A 96 DSLKRE-II---ENGKFDQWFDELFGNDTF----HLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGES 166 (296)
T ss_dssp HHHHHH-HH---HHTHHHHHHHHHHSSSCE----EEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC---------
T ss_pred cccccC-CC---CHHHHHHHHHHHhccCCE----EEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCC
Confidence 445432 11 223344455555554444 2333456789998 66776 999999999999999999 5 5
Q ss_pred CH-HHHHHHHHHHHHh-cC-CceEEEEcCCH--H--------------------HHHhhCCEEEEEeCCEE
Q 007178 462 DP-ASRNNLWNVVKRA-KQ-GRAIILTTHSM--E--------------------EAEALCDRLGIFVDGSL 507 (614)
Q Consensus 462 D~-~~~~~i~~~l~~~-~~-g~tIil~TH~~--~--------------------e~~~l~dri~il~~G~l 507 (614)
|+ ...+++++.|+++ ++ |.|||++||+. + .++.+||+|++|++|+.
T Consensus 167 d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 167 DERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp --CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 65 6678888888886 43 99999999995 5 78889999999999985
No 84
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.88 E-value=9e-26 Score=235.55 Aligned_cols=182 Identities=13% Similarity=0.105 Sum_probs=138.4
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeeEE-----------------------EeCCcEEEEECCCCCcHHHHHHHHhC
Q 007178 289 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLA-----------------------LPSGECFGMLGPNGAGKTTFISMMIG 345 (614)
Q Consensus 289 ~~~i~~~~l~k~y~~~~~~~~~~~l~~isl~-----------------------i~~Gei~~LlG~NGaGKTTll~~l~G 345 (614)
...|+++||+|.|+ ++++++++. +++|+++||+||||||||||+++|+|
T Consensus 41 ~~~i~~~~v~~~y~--------p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 41 GEQIDLLEVEEVYL--------PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp TCCCCHHHHHHTHH--------HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEeeehhhhhh--------hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHh
Confidence 44689999999994 366666654 89999999999999999999999999
Q ss_pred CCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCccc
Q 007178 346 ITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVAD 425 (614)
Q Consensus 346 l~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~ 425 (614)
+++|+.|. +++++++|++.+++. |++||+.+.. .++.+.....+.+.+.++.++ . +..+
T Consensus 113 ll~~~~G~----------------~~v~~v~qd~~~~~~-t~~e~~~~~~-~~g~~~~~d~~~~~~~L~~l~-~--~~~~ 171 (312)
T 3aez_A 113 LLARWDHH----------------PRVDLVTTDGFLYPN-AELQRRNLMH-RKGFPESYNRRALMRFVTSVK-S--GSDY 171 (312)
T ss_dssp HHHTSTTC----------------CCEEEEEGGGGBCCH-HHHHHTTCTT-CTTSGGGBCHHHHHHHHHHHH-T--TCSC
T ss_pred hccccCCC----------------CeEEEEecCccCCcc-cHHHHHHHHH-hcCCChHHHHHHHHHHHHHhC-C--Cccc
Confidence 99998663 458999999999988 9999986532 234444444567788888888 4 2556
Q ss_pred ccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHH-HhhCCEEEEEeC
Q 007178 426 KQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEA-EALCDRLGIFVD 504 (614)
Q Consensus 426 ~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~-~~l~dri~il~~ 504 (614)
.++.+|||||+||+++|+|++.+|++||||||++.+|+.. .. +.+. -+.+ |+++|+.+.. +++.+|...+.+
T Consensus 172 ~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-~~----l~~~-~D~~-I~V~a~~~~~~~R~i~R~~~~rd 244 (312)
T 3aez_A 172 ACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-LM----VSDL-FDFS-LYVDARIEDIEQWYVSRFLAMRT 244 (312)
T ss_dssp EEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-CC----GGGG-CSEE-EEEEECHHHHHHHHHHHHHHHTT
T ss_pred CCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-HH----HHHh-cCcE-EEEECCHHHHHHHHHHHHHHHHh
Confidence 7889999999999999999999999999999999998621 01 1111 1344 5566676653 345666555556
Q ss_pred CE
Q 007178 505 GS 506 (614)
Q Consensus 505 G~ 506 (614)
|+
T Consensus 245 ~~ 246 (312)
T 3aez_A 245 TA 246 (312)
T ss_dssp TG
T ss_pred cc
Confidence 54
No 85
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.87 E-value=2.4e-24 Score=226.55 Aligned_cols=148 Identities=14% Similarity=0.174 Sum_probs=116.7
Q ss_pred eeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHH
Q 007178 312 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHL 391 (614)
Q Consensus 312 ~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~l 391 (614)
+++++|+++++|++++|+||||||||||+++|+|+++|++|.|.++|.+... ....++.+++++|
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~-~~~~~~~i~~~~g-------------- 224 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIV-FKHHKNYTQLFFG-------------- 224 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCC-CSSCSSEEEEECB--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccc-cccchhEEEEEeC--------------
Confidence 8999999999999999999999999999999999999999999999865211 1112334454430
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHH
Q 007178 392 LFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN 471 (614)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~ 471 (614)
|||+||++||+||..+|++++|||||+ .++++
T Consensus 225 -----------------------------------------gg~~~r~~la~aL~~~p~ilildE~~~-------~e~~~ 256 (330)
T 2pt7_A 225 -----------------------------------------GNITSADCLKSCLRMRPDRIILGELRS-------SEAYD 256 (330)
T ss_dssp -----------------------------------------TTBCHHHHHHHHTTSCCSEEEECCCCS-------THHHH
T ss_pred -----------------------------------------CChhHHHHHHHHhhhCCCEEEEcCCCh-------HHHHH
Confidence 899999999999999999999999998 24677
Q ss_pred HHHHhcCC-ceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEc-CHHHHHHhcCCc
Q 007178 472 VVKRAKQG-RAIILTTHSMEEAEALCDRLGIFVDGSLQCIG-NPKELKARYGGS 523 (614)
Q Consensus 472 ~l~~~~~g-~tIil~TH~~~e~~~l~dri~il~~G~l~~~g-~~~~l~~~~~~~ 523 (614)
.++.+..| .|+++|||+++ +...|||+++|.+|+-...+ +.+.+.......
T Consensus 257 ~l~~~~~g~~tvi~t~H~~~-~~~~~dri~~l~~g~~~~~~~~~~~i~~~i~~~ 309 (330)
T 2pt7_A 257 FYNVLCSGHKGTLTTLHAGS-SEEAFIRLANMSSSNSAARNIKFESLIEGFKDL 309 (330)
T ss_dssp HHHHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHTSGGGTTSCHHHHHHHHHTT
T ss_pred HHHHHhcCCCEEEEEEcccH-HHHHhhhheehhcCCcccCCCCHHHHHHHHHHh
Confidence 77776665 48999999998 77789999999988643222 334444444333
No 86
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.87 E-value=8.9e-24 Score=212.76 Aligned_cols=176 Identities=14% Similarity=0.163 Sum_probs=119.1
Q ss_pred ccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHH
Q 007178 309 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 388 (614)
Q Consensus 309 ~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~ 388 (614)
++.+|+|+||++++|+++||+|||||||||++++|+|++ |.+.++ ..++.++|++|++ +++.+|+.
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~---------~~~~~i~~v~~d~-~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE---------QRQRKVVILSQDR-FYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC---------GGGCSEEEEEGGG-GBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc---------ccCCceEEEeCCc-CccccCHh
Confidence 467999999999999999999999999999999999976 544433 2467899999995 77889999
Q ss_pred HHHHHHhhhcCCCch--hHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHH
Q 007178 389 EHLLFYGRLKNLKGP--ALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 466 (614)
Q Consensus 389 e~l~~~~~~~~~~~~--~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~ 466 (614)
|++.+.....+.... ...+.+.+.++.+ . ...+.++..||+||+||+++ ++++.+|+++|+|||....|+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--~--~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~-- 149 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHRTLKNI--V--EGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE-- 149 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHHHHHHH--H--TTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--
T ss_pred HhhhhhccCCCCCCcccccHHHHHHHHHHH--H--CCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH--
Confidence 999876543332211 1133445555544 2 24577889999999999988 5889999999999998888764
Q ss_pred HHHHHHHHHhcCCceEEEEcCCHHHH-HhhCCEEEEEeCCEEEEEcCHHHHHHhc
Q 007178 467 NNLWNVVKRAKQGRAIILTTHSMEEA-EALCDRLGIFVDGSLQCIGNPKELKARY 520 (614)
Q Consensus 467 ~~i~~~l~~~~~g~tIil~TH~~~e~-~~l~dri~il~~G~l~~~g~~~~l~~~~ 520 (614)
++ +. .+.+|+++||+...+ ..+++++ ++|+ +.+++.+++
T Consensus 150 --l~----~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~~~ 189 (245)
T 2jeo_A 150 --IR----DM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILTQY 189 (245)
T ss_dssp --HH----TT-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHHHH
T ss_pred --HH----Hh-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHHHH
Confidence 21 21 378999999974444 4555545 6674 677777654
No 87
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.87 E-value=1.8e-22 Score=235.75 Aligned_cols=161 Identities=23% Similarity=0.290 Sum_probs=129.3
Q ss_pred HHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc----------hhHH
Q 007178 337 TTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG----------PALT 406 (614)
Q Consensus 337 TTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~----------~~~~ 406 (614)
+|...|..+.++|.+|+|+++|+++.. +..+|+.|++.+...+. .+. ++.
T Consensus 382 ~~C~~C~g~rl~~~~~~V~i~G~~i~~------------------~~~~~v~~~l~~~~~~~-l~~~~~~~~~~~~~~~- 441 (916)
T 3pih_A 382 RTCSVCGGRRLNREALSVKINGLNIHE------------------FTELSISEELEFLKNLN-LTEREREIVGELLKEI- 441 (916)
T ss_dssp EECTTTCSCCBCTTGGGEEETTEEHHH------------------HHHSBHHHHHHHHHSCC-CCTTTTTTHHHHHHHH-
T ss_pred ccchhcccccCChHhcCcEECCccHHH------------------hhhCCHHHHHHHHHhcc-CcHHHHHHHHhhHHHH-
Confidence 455677778899999999999998732 22345666665543321 110 112
Q ss_pred HHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCC--EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEE
Q 007178 407 QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK--VVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAII 483 (614)
Q Consensus 407 ~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~--vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIi 483 (614)
++..+.++.+||.. ...++++.+||||||||++||+||+.+|+ ++||||||+||||..+++++++|++++ +|.|||
T Consensus 442 ~~~~~~L~~vgL~~-l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~Tvi 520 (916)
T 3pih_A 442 EKRLEFLVDVGLEY-LTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVI 520 (916)
T ss_dssp HHHHHHHHTTTCTT-CBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEE
T ss_pred HHHHHHHHHcCCcc-ccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 23456788899963 23689999999999999999999999887 999999999999999999999999975 599999
Q ss_pred EEcCCHHHHHhhCCEEEEE------eCCEEEEEcCHHHHHHh
Q 007178 484 LTTHSMEEAEALCDRLGIF------VDGSLQCIGNPKELKAR 519 (614)
Q Consensus 484 l~TH~~~e~~~l~dri~il------~~G~l~~~g~~~~l~~~ 519 (614)
++|||++++.. ||||++| ++|++++.|+++++.+.
T Consensus 521 vVtHd~~~~~~-aD~ii~lgpgag~~~G~iv~~G~~~e~~~~ 561 (916)
T 3pih_A 521 VVEHDEEVIRN-ADHIIDIGPGGGTNGGRVVFQGTVDELLKN 561 (916)
T ss_dssp EECCCHHHHHT-CSEEEEEESSSGGGCSEEEEEECHHHHHHS
T ss_pred EEeCCHHHHHh-CCEEEEEcCCcccCCCEEEEeechhhhhcC
Confidence 99999999875 9999999 99999999999998643
No 88
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.86 E-value=1.9e-21 Score=205.23 Aligned_cols=80 Identities=26% Similarity=0.394 Sum_probs=71.8
Q ss_pred cccccCCCCChhHHH------HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhh
Q 007178 423 VADKQAGKYSGGMKR------RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEAL 495 (614)
Q Consensus 423 ~~~~~~~~LSgG~kq------rl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l 495 (614)
..++++.+||||||| |+++|+|++.+|+++||||||+||||..++.+++.|+++ ++|.|||++||+.+ +...
T Consensus 241 ~~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~-~~~~ 319 (339)
T 3qkt_A 241 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDA 319 (339)
T ss_dssp TEEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGG
T ss_pred cCcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH-HHHh
Confidence 346789999999999 678889999999999999999999999999999999985 46889999999964 6778
Q ss_pred CCEEEEEe
Q 007178 496 CDRLGIFV 503 (614)
Q Consensus 496 ~dri~il~ 503 (614)
|||+++|+
T Consensus 320 ~d~~~~l~ 327 (339)
T 3qkt_A 320 ADHVIRIS 327 (339)
T ss_dssp CSEEEEEE
T ss_pred CCEEEEEE
Confidence 99999885
No 89
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.86 E-value=9.8e-22 Score=218.92 Aligned_cols=80 Identities=20% Similarity=0.204 Sum_probs=74.0
Q ss_pred ccCCCC-ChhHHHHHHHHHHHhCCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEE
Q 007178 426 KQAGKY-SGGMKRRLSVAISLIGNP--KVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIF 502 (614)
Q Consensus 426 ~~~~~L-SgG~kqrl~ia~al~~~p--~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il 502 (614)
+++.+| |||||||++||+||+.+| ++|||||||+|||+.+++.+.+.|+++++|+|||++||+++.+. .|||+++|
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~-~~d~~~~~ 470 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKV 470 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHH-HSSEEEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEE
Confidence 467778 999999999999999999 99999999999999999999999998766899999999999886 69999999
Q ss_pred eCCE
Q 007178 503 VDGS 506 (614)
Q Consensus 503 ~~G~ 506 (614)
++|.
T Consensus 471 ~~~~ 474 (517)
T 4ad8_A 471 EKQV 474 (517)
T ss_dssp ECCE
T ss_pred eccc
Confidence 7764
No 90
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.86 E-value=2.4e-23 Score=208.37 Aligned_cols=164 Identities=18% Similarity=0.111 Sum_probs=112.5
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHh--CCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhh
Q 007178 319 ALPSGECFGMLGPNGAGKTTFISMMI--GITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGR 396 (614)
Q Consensus 319 ~i~~Gei~~LlG~NGaGKTTll~~l~--Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~ 396 (614)
.|++|++++|+||||||||||+++|+ |+.++.+|.+++++.+......+..+.+|+.+|+....+.+++.++......
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 105 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccc
Confidence 79999999999999999999999999 7757778888888866543333445678888887655555555554332110
Q ss_pred hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCC-----HHHHHHHHH
Q 007178 397 LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLD-----PASRNNLWN 471 (614)
Q Consensus 397 ~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD-----~~~~~~i~~ 471 (614)
. . .... .......+.++.++...+..-..+|+++++||||+++| +..++.+++
T Consensus 106 ~---~----~~~~---------------~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~ 163 (251)
T 2ehv_A 106 L---P----SEEK---------------FVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLK 163 (251)
T ss_dssp ----------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHH
T ss_pred c---c----cccc---------------eeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHH
Confidence 0 0 0000 00111223445444444444568999999999999998 777777999
Q ss_pred HHHHhc-CCceEEEEcCCHHHH---------HhhC-CEEEEEeC
Q 007178 472 VVKRAK-QGRAIILTTHSMEEA---------EALC-DRLGIFVD 504 (614)
Q Consensus 472 ~l~~~~-~g~tIil~TH~~~e~---------~~l~-dri~il~~ 504 (614)
+++.++ +|+|||++||+++++ +.+| |++++|++
T Consensus 164 l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 164 LNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp HHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred HHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 998864 599999999999998 6888 99999974
No 91
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.84 E-value=1.2e-21 Score=218.61 Aligned_cols=154 Identities=14% Similarity=0.062 Sum_probs=122.1
Q ss_pred eEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhh
Q 007178 317 SLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGR 396 (614)
Q Consensus 317 sl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~ 396 (614)
+..+++|++++|.||||||||||+++++|+.+|+ |+ +.+.+.+|++. .++.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~----------------~vi~~~~ee~~----~~l~~~~~---- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE----------------RAILFAYEESR----AQLLRNAY---- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC----------------CEEEEESSSCH----HHHHHHHH----
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC----------------CEEEEEEeCCH----HHHHHHHH----
Confidence 4499999999999999999999999999998885 53 11345566531 02222221
Q ss_pred hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHH-----HHHHHHH
Q 007178 397 LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA-----SRNNLWN 471 (614)
Q Consensus 397 ~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~-----~~~~i~~ 471 (614)
..+.. +++ +...|+. ...+..+.+|||||+||+.+|+++..+|+++++| ||+|||+. .++.+++
T Consensus 330 ~~g~~-------~~~-~~~~g~~--~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ 398 (525)
T 1tf7_A 330 SWGMD-------FEE-MERQNLL--KIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIG 398 (525)
T ss_dssp TTSCC-------HHH-HHHTTSE--EECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHH
T ss_pred HcCCC-------HHH-HHhCCCE--EEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHH
Confidence 11222 122 2245654 3678889999999999999999999999999999 99999999 9999999
Q ss_pred HHHHhc-CCceEEEEcCCH----------HHHHhhCCEEEEEeCCE
Q 007178 472 VVKRAK-QGRAIILTTHSM----------EEAEALCDRLGIFVDGS 506 (614)
Q Consensus 472 ~l~~~~-~g~tIil~TH~~----------~e~~~l~dri~il~~G~ 506 (614)
+++.++ +|.|||++||++ ++++.+||+|++|++|+
T Consensus 399 ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 399 VTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 998864 699999999999 88888999999999987
No 92
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.83 E-value=5.9e-21 Score=221.73 Aligned_cols=131 Identities=24% Similarity=0.371 Sum_probs=112.7
Q ss_pred CCCHHHHHHHHhhhcCCCc----------hhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCC--CE
Q 007178 384 TLTGREHLLFYGRLKNLKG----------PALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP--KV 451 (614)
Q Consensus 384 ~lTv~e~l~~~~~~~~~~~----------~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p--~v 451 (614)
.|||.|++.|+..+. ++. +++.+++ +.|+.+||.. -..++++.+||||||||++||++|..+| ++
T Consensus 451 ~ltV~e~~~f~e~l~-l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~-l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~l 527 (972)
T 2r6f_A 451 AMSVTEALAFFDGLE-LTEKEAQIARLILREIRDRL-GFLQNVGLDY-LTLSRSAGTLSGGEAQRIRLATQIGSRLTGVL 527 (972)
T ss_dssp TSBHHHHHHHHHHCC-CCHHHHHHSHHHHHHHHHHH-HHHHHHTCTT-SBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCE
T ss_pred hCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHH-HHhhhCCCCc-cccCCccccCCHHHHHHHHHHHHHhhCCCCCE
Confidence 589999999976653 333 2445565 4589999962 1369999999999999999999999985 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEE------eCCEEEEEcCHHHHHH
Q 007178 452 VYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIF------VDGSLQCIGNPKELKA 518 (614)
Q Consensus 452 llLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il------~~G~l~~~g~~~~l~~ 518 (614)
+||||||+||||..++++++.|++++ .|.|||+++|+++++. .||||++| ++|++++.|+++++.+
T Consensus 528 lILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~ 600 (972)
T 2r6f_A 528 YVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYLIDIGPGAGIHGGEVVAAGTPEEVMN 600 (972)
T ss_dssp EEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHH-SCSEEEEECSSSGGGCCSEEEEECTTTTTT
T ss_pred EEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEeCCCccCCCCEEEEecCHHHHHh
Confidence 99999999999999999999999975 5999999999999986 69999999 7999999999988743
No 93
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.83 E-value=6.6e-22 Score=231.89 Aligned_cols=168 Identities=21% Similarity=0.222 Sum_probs=119.0
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHH--------hCCCCCCccEEEEcCeeCC
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMM--------IGITRTTSGTAYVQGLDIR 362 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l--------~Gl~~p~sG~i~i~G~~i~ 362 (614)
.+.+++...-+-... .+++.+++|++|++++|++++|+|||||||||++|++ .|...|.++..
T Consensus 631 ~i~i~~~rHP~le~~-~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 631 RIILKASRHACVEVQ-DEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp EEEEEEECCTTTTTC---CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred ceEeecCccchhhhc-CCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 466665543332111 1135799999999999999999999999999999999 44444432211
Q ss_pred CcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHH
Q 007178 363 TDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 442 (614)
Q Consensus 363 ~~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia 442 (614)
++. +++++..+|+. +.....+|+|++++..+|
T Consensus 702 ---------~~~----------------------------------~d~i~~~ig~~-----d~l~~~lStf~~e~~~~a 733 (934)
T 3thx_A 702 ---------VSI----------------------------------VDCILARVGAG-----DSQLKGVSTFMAEMLETA 733 (934)
T ss_dssp ---------EEC----------------------------------CSEEEEECC--------------CHHHHHHHHHH
T ss_pred ---------chH----------------------------------HHHHHHhcCch-----hhHHHhHhhhHHHHHHHH
Confidence 110 01122334442 234456788888888888
Q ss_pred HHH--hCCCCEEEEeCCCCCCCHHHHHHH-HHHHHHhc--CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHH
Q 007178 443 ISL--IGNPKVVYMDEPSTGLDPASRNNL-WNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 516 (614)
Q Consensus 443 ~al--~~~p~vllLDEPtsgLD~~~~~~i-~~~l~~~~--~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l 516 (614)
+++ +.+|+++||||||+|+||..+..+ |.+++.+. .|.++|++||+.+.+ .+||++..+++|++.+.++.+++
T Consensus 734 ~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 734 SILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-ALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp HHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GGGGTCTTEEEEEEEEEEETTEE
T ss_pred HHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HHhcccceeEeeEEEEEecCCcE
Confidence 888 999999999999999999999888 77777753 489999999997655 68999999999999998877654
No 94
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.81 E-value=2.8e-20 Score=215.56 Aligned_cols=180 Identities=24% Similarity=0.294 Sum_probs=132.7
Q ss_pred CCCCcHHHHHHHHhCC---------CCCCccEEEEcCeeCCC----cHHHhhcceEEEcCCCCCCC----CCCHHHHHHH
Q 007178 331 PNGAGKTTFISMMIGI---------TRTTSGTAYVQGLDIRT----DMDRIYTSMGVCPQEDLLWE----TLTGREHLLF 393 (614)
Q Consensus 331 ~NGaGKTTll~~l~Gl---------~~p~sG~i~i~G~~i~~----~~~~~~~~ig~~~Q~~~l~~----~lTv~e~l~~ 393 (614)
.+..||+|+.+.+... ++|.+|+|.++|+++.. ...+...-++-+||+..... .++. ++...
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i 348 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGHAERVKNRP-EQAIA 348 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCSTTSSSSCS-SHHHH
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcccchhhcch-hhHHH
Confidence 4567999999988774 56678999999998743 11222111222233211000 0111 11111
Q ss_pred HhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCC--CEEEEeCCCCCCCHHHHHHHHH
Q 007178 394 YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP--KVVYMDEPSTGLDPASRNNLWN 471 (614)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p--~vllLDEPtsgLD~~~~~~i~~ 471 (614)
...+ .+++.++++ .++.+||.. -..++++.+||||||||++||+||..+| +++||||||+||||..++.+++
T Consensus 349 ~~~i----~~ei~~rl~-~L~~vGL~~-l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~ 422 (842)
T 2vf7_A 349 LQRM----AADLVKRLD-VLLHLGLGY-LGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLS 422 (842)
T ss_dssp HHHH----HHHHHHHHH-HHHHTTCTT-SBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHH
T ss_pred HHHH----HHHHHHHHH-HHHhCCCCc-CCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHH
Confidence 1111 245566776 688999963 1269999999999999999999999999 5999999999999999999999
Q ss_pred HHHHhc-CCceEEEEcCCHHHHHhhCCEEEEE------eCCEEEEEcCHHHHHH
Q 007178 472 VVKRAK-QGRAIILTTHSMEEAEALCDRLGIF------VDGSLQCIGNPKELKA 518 (614)
Q Consensus 472 ~l~~~~-~g~tIil~TH~~~e~~~l~dri~il------~~G~l~~~g~~~~l~~ 518 (614)
+|++++ +|.|||+++|+++++. .||||++| ++|++++.|+++++.+
T Consensus 423 ~l~~L~~~G~TVIvVeHdl~~l~-~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~ 475 (842)
T 2vf7_A 423 ALENLKRGGNSLFVVEHDLDVIR-RADWLVDVGPEAGEKGGEILYSGPPEGLKH 475 (842)
T ss_dssp HHHHHHTTTCEEEEECCCHHHHT-TCSEEEEECSSSGGGCCSEEEEECGGGGGG
T ss_pred HHHHHHHcCCEEEEEcCCHHHHH-hCCEEEEeCCCcccCCCEEEEecCHHHHHh
Confidence 999975 5999999999999775 69999999 7999999999988643
No 95
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.81 E-value=1.9e-21 Score=197.94 Aligned_cols=132 Identities=20% Similarity=0.177 Sum_probs=102.4
Q ss_pred ceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC-ccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHH
Q 007178 311 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT-SGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 389 (614)
Q Consensus 311 ~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~-sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e 389 (614)
.+|+|+| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++. |++|+..-+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~-----------~~~~~~~~~------- 74 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-----------YVFKHKKSI------- 74 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCC-----------SCCCCSSSE-------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcce-----------eecCCccee-------
Confidence 3899999 9999999999999999999999999999998 999999987652 333322100
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHH
Q 007178 390 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 469 (614)
Q Consensus 390 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i 469 (614)
. .. +.+|+.. .+| |++||+||..+|+++++|||| |+.+.+.+
T Consensus 75 -------v---~q-----------~~~gl~~--------~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~ 116 (261)
T 2eyu_A 75 -------V---NQ-----------REVGEDT--------KSF------ADALRAALREDPDVIFVGEMR---DLETVETA 116 (261)
T ss_dssp -------E---EE-----------EEBTTTB--------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHH
T ss_pred -------e---eH-----------HHhCCCH--------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHH
Confidence 0 00 0344421 122 899999999999999999999 99886544
Q ss_pred HHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeC
Q 007178 470 WNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVD 504 (614)
Q Consensus 470 ~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~ 504 (614)
++....|.+|+++||+.+ +...|||++.|..
T Consensus 117 ---l~~~~~g~~vl~t~H~~~-~~~~~dri~~l~~ 147 (261)
T 2eyu_A 117 ---LRAAETGHLVFGTLHTNT-AIDTIHRIVDIFP 147 (261)
T ss_dssp ---HHHHHTTCEEEEEECCSS-HHHHHHHHHHTSC
T ss_pred ---HHHHccCCEEEEEeCcch-HHHHHHHHhhhcC
Confidence 444457999999999987 5678999887754
No 96
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.80 E-value=7.6e-20 Score=213.14 Aligned_cols=133 Identities=23% Similarity=0.263 Sum_probs=112.8
Q ss_pred CCCCCHHHHHHHHhhhcCCCc----------hhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCC--C
Q 007178 382 WETLTGREHLLFYGRLKNLKG----------PALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN--P 449 (614)
Q Consensus 382 ~~~lTv~e~l~~~~~~~~~~~----------~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~--p 449 (614)
+..+||.|.+.|+..+ +++. +++.+++ +.++.+||.. -..++++.+||||||||++||+||..+ |
T Consensus 466 ~~~ltV~e~l~f~enl-~l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~-l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~ 542 (993)
T 2ygr_A 466 VCELSIADCADFLNAL-TLGPREQAIAGQVLKEIRSRL-GFLLDVGLEY-LSLSRAAATLSGGEAQRIRLATQIGSGLVG 542 (993)
T ss_dssp SSHHHHHHHHHTTTTT-TSCHHHHHHHHHHHHHHHHHH-HHHHHHTGGG-SCTTCBGGGCCHHHHHHHHHHHHHTTCCCS
T ss_pred HhhCCHHHHHHHHHhc-CCCHHHhHHHHHHHHHHHHHH-HHHhhCCCCc-cccCCCcccCCHHHHHHHHHHHHHhhCCCC
Confidence 3458999999996544 3443 3445555 3578899952 126999999999999999999999998 5
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEEEE------eCCEEEEEcCHHHHHH
Q 007178 450 KVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIF------VDGSLQCIGNPKELKA 518 (614)
Q Consensus 450 ~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~il------~~G~l~~~g~~~~l~~ 518 (614)
+++||||||+||||..+++++++|++++ .|.|||+++|+++++. .||||++| ++|++++.|+++++.+
T Consensus 543 ~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~ 617 (993)
T 2ygr_A 543 VLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIE-HADWIVDIGPGAGEHGGRIVHSGPYDELLR 617 (993)
T ss_dssp CEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHH-TCSEEEEECSSSGGGCCSCCEEECHHHHHH
T ss_pred cEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHH-hCCEEEEecCccccCCCEEEEeeCHHHhhh
Confidence 9999999999999999999999999975 6999999999999986 69999999 7999999999998865
No 97
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.80 E-value=1.2e-19 Score=168.75 Aligned_cols=83 Identities=28% Similarity=0.407 Sum_probs=74.9
Q ss_pred ccccCCCCChhHHHHHHHH------HHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHhhC
Q 007178 424 ADKQAGKYSGGMKRRLSVA------ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALC 496 (614)
Q Consensus 424 ~~~~~~~LSgG~kqrl~ia------~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~e~~~l~ 496 (614)
.++++.+||||||||++|| +||+++|+++||||||+|||+.+++.+++.+++. ++|+|||++||++ ++..+|
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~~~~ 129 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-ELKDAA 129 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG-GGGGGC
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH-HHHHhC
Confidence 5788999999999999876 8999999999999999999999999999999986 4589999999999 567899
Q ss_pred CEEEEE--eCCEE
Q 007178 497 DRLGIF--VDGSL 507 (614)
Q Consensus 497 dri~il--~~G~l 507 (614)
|++++| .+|.-
T Consensus 130 d~ii~l~~~~g~s 142 (148)
T 1f2t_B 130 DHVIRISLENGSS 142 (148)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEcCCCeE
Confidence 999999 55643
No 98
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.80 E-value=3.9e-22 Score=207.19 Aligned_cols=163 Identities=15% Similarity=0.115 Sum_probs=88.8
Q ss_pred EeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCC-CCCCccEEEEcCeeCCCcHHHhhcceE
Q 007178 295 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI-TRTTSGTAYVQGLDIRTDMDRIYTSMG 373 (614)
Q Consensus 295 ~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl-~~p~sG~i~i~G~~i~~~~~~~~~~ig 373 (614)
+||+|.|++ +.++++++|+| +|+||||||||||+++|.|. ..|++| +.++|.++.... . ++.++
T Consensus 2 ~~l~~~~~~------~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~-~-~~~~~ 66 (301)
T 2qnr_A 2 SNLPNQVHR------KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTV-Q-IEAST 66 (301)
T ss_dssp ----------------------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CE
T ss_pred CCCcceECC------EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcc-e-EeeEE
Confidence 488999973 67999999999 99999999999999999998 889999 888888764321 1 35689
Q ss_pred EEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEE
Q 007178 374 VCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVY 453 (614)
Q Consensus 374 ~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vll 453 (614)
+++|.+.+...+|+.|+..++..... . ++...+.+. +. +..+++..++|||||||+.+|||++ +++
T Consensus 67 ~~~q~~~~~~~ltv~Dt~g~~~~~~~--~----e~~~~l~~~--l~--~~~~~~~~~~sgg~rqrv~~ara~~----ll~ 132 (301)
T 2qnr_A 67 VEIEERGVKLRLTVVDTPGYGDAINC--R----DCFKTIISY--ID--EQFERYLHDESGLNRRHIIDNRVHC----CFY 132 (301)
T ss_dssp EEEC---CCEEEEEEEEC-----------------CTTHHHH--HH--HHHHHHHHHHTSSCCTTCCCCCCCE----EEE
T ss_pred EEecCCCcccCcchhhhhhhhhhcCc--H----HHHHHHHHH--HH--HHHHHHHHHhCHHhhhhhhhhhhhh----eee
Confidence 99999888888999998876433210 0 111111111 11 1346788899999999999988885 999
Q ss_pred EeCCCC-CCCHHHHHHHHHHHHHhc--CCceEEEEcCCHH
Q 007178 454 MDEPST-GLDPASRNNLWNVVKRAK--QGRAIILTTHSME 490 (614)
Q Consensus 454 LDEPts-gLD~~~~~~i~~~l~~~~--~g~tIil~TH~~~ 490 (614)
+||||+ |||+... ++++++. .+.++|+++||+.
T Consensus 133 ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 133 FISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp EECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred eecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 999998 5999874 4555543 3789999999985
No 99
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.80 E-value=9.4e-21 Score=218.45 Aligned_cols=146 Identities=21% Similarity=0.212 Sum_probs=113.5
Q ss_pred cceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-CCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHH
Q 007178 310 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-TTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 388 (614)
Q Consensus 310 ~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~ 388 (614)
+.+++|+||+ |++++|+|||||||||++|+|+|+.. |+.|.+. . ..+..+|+++| +++.+++.
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v------p----a~~~~i~~v~~---i~~~~~~~ 629 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV------P----AEEAHLPLFDG---IYTRIGAS 629 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB------S----SSEEEECCCSE---EEEECCC-
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee------e----hhccceeeHHH---hhccCCHH
Confidence 5799999999 99999999999999999999999874 7788642 1 12345888877 56667777
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH--hCCCCEEEEeCC---CCCCCH
Q 007178 389 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL--IGNPKVVYMDEP---STGLDP 463 (614)
Q Consensus 389 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al--~~~p~vllLDEP---tsgLD~ 463 (614)
||+.. .+|+||++++.+|+++ +.+|+++||||| |+++|+
T Consensus 630 d~l~~------------------------------------g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~ 673 (765)
T 1ewq_A 630 DDLAG------------------------------------GKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDG 673 (765)
T ss_dssp -----------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHH
T ss_pred HHHHh------------------------------------cccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCH
Confidence 66531 2588999999999999 999999999999 999999
Q ss_pred HHH-HHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcC
Q 007178 464 ASR-NNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 512 (614)
Q Consensus 464 ~~~-~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~ 512 (614)
.++ ..+.+.+.+ .|.++|++||+.++++ +| .-.+.++.+.+...
T Consensus 674 ~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~-~~--~~~v~n~~~~~~~~ 718 (765)
T 1ewq_A 674 VAIATAVAEALHE--RRAYTLFATHYFELTA-LG--LPRLKNLHVAAREE 718 (765)
T ss_dssp HHHHHHHHHHHHH--HTCEEEEECCCHHHHT-CC--CTTEEEEEEEEECC
T ss_pred HHHHHHHHHHHHh--CCCEEEEEeCCHHHHH-hh--hhcceEEEEEEEEc
Confidence 886 468887766 5899999999998765 56 33356677766543
No 100
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.79 E-value=8e-19 Score=190.97 Aligned_cols=77 Identities=18% Similarity=0.167 Sum_probs=68.8
Q ss_pred ccCCCCChhHHHHHHHHHHHh----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHhhCCEEE
Q 007178 426 KQAGKYSGGMKRRLSVAISLI----GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLG 500 (614)
Q Consensus 426 ~~~~~LSgG~kqrl~ia~al~----~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~~l~dri~ 500 (614)
+++..||||||||++||++|+ ++|+++||||||++||+..++.+++.|++.. +|.++|++||+.+. ...||+++
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~-~~~~d~~~ 407 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTM-FEKSDALV 407 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHH-HTTCSEEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHH-HHhCCEEE
Confidence 445569999999999999999 6899999999999999999999999999874 58899999999765 45799998
Q ss_pred EEe
Q 007178 501 IFV 503 (614)
Q Consensus 501 il~ 503 (614)
.+.
T Consensus 408 ~~~ 410 (430)
T 1w1w_A 408 GVY 410 (430)
T ss_dssp EEE
T ss_pred EEE
Confidence 886
No 101
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.79 E-value=1.2e-20 Score=220.83 Aligned_cols=154 Identities=14% Similarity=0.135 Sum_probs=106.3
Q ss_pred ccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHH
Q 007178 309 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 388 (614)
Q Consensus 309 ~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~ 388 (614)
++.+++|+||++++|++++|+|||||||||++|+++++.... +.-+++|+...-.+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a-------------------q~g~~vpa~~~~i~~---- 715 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA-------------------QIGSYVPAEEATIGI---- 715 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH-------------------HHTCCBSSSEEEEEC----
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh-------------------hcCccccchhhhhhH----
Confidence 367999999999999999999999999999999997642110 001122322110000
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHH
Q 007178 389 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNN 468 (614)
Q Consensus 389 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~ 468 (614)
+++++..+|+. +...+..+++|+||+|++.++++ +.+|+++||||||+|+||..+..
T Consensus 716 --------------------~d~i~~~ig~~--d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~ 772 (918)
T 3thx_B 716 --------------------VDGIFTRMGAA--DNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIA 772 (918)
T ss_dssp --------------------CSEEEEEC------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHH
T ss_pred --------------------HHHHHHhCChH--HHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHH
Confidence 01123334443 24456678899999999999999 89999999999999999999988
Q ss_pred HH-HHHHHh-c-CCceEEEEcCCHHHHHhhCCEEEE-EeCCEEEE
Q 007178 469 LW-NVVKRA-K-QGRAIILTTHSMEEAEALCDRLGI-FVDGSLQC 509 (614)
Q Consensus 469 i~-~~l~~~-~-~g~tIil~TH~~~e~~~l~dri~i-l~~G~l~~ 509 (614)
+. .+++.+ + .|.++|++||+++.+ ++||+.-- +.++.+.+
T Consensus 773 i~~~il~~L~~~~g~tvl~vTH~~el~-~l~~~~~~~v~n~~~~~ 816 (918)
T 3thx_B 773 IAYATLEYFIRDVKSLTLFVTHYPPVC-ELEKNYSHQVGNYHMGF 816 (918)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHHTTTTEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCeEEEEeCcHHHH-HHHhhcccceEEEEEEE
Confidence 86 677765 4 599999999998776 46776532 45666655
No 102
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.79 E-value=3.5e-22 Score=226.30 Aligned_cols=190 Identities=14% Similarity=0.233 Sum_probs=122.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeee----------eEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-CccEEEEcCe
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGL----------SLALPSGECFGMLGPNGAGKTTFISMMIGITRT-TSGTAYVQGL 359 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~i----------sl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-~sG~i~i~G~ 359 (614)
.+.++|+++.|+.. .+.+++.+ +++++. +||+||||||||||+++|+|+..| ++|+|+++|.
T Consensus 10 ~i~~~~l~~~~~~~----~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~ 82 (608)
T 3szr_A 10 SVAENNLCSQYEEK----VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPL 82 (608)
T ss_dssp ----------CHHH----HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCE
T ss_pred hhhhhhhhHHHHHH----HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCE
Confidence 47789999999631 12344444 366654 999999999999999999999988 8999999999
Q ss_pred eCCC----cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhH
Q 007178 360 DIRT----DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM 435 (614)
Q Consensus 360 ~i~~----~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~ 435 (614)
++.. .....++.+||+||++.+++.+||+||+.+.....+.. .-++. +
T Consensus 83 ~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~-------------~~~~s-----~---------- 134 (608)
T 3szr_A 83 VLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGE-------------GMGIS-----H---------- 134 (608)
T ss_dssp EEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCS-------------SSCCC-----S----------
T ss_pred EEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCC-------------ccccc-----h----------
Confidence 8631 12356788999999999999999999998754321100 01111 1
Q ss_pred HHHHHHHHHHhCCCCEEEEeCC------CCCCCHHHHHHHHHHHHHh-c--CCceEEEEcCCHHHH--------Hhh---
Q 007178 436 KRRLSVAISLIGNPKVVYMDEP------STGLDPASRNNLWNVVKRA-K--QGRAIILTTHSMEEA--------EAL--- 495 (614)
Q Consensus 436 kqrl~ia~al~~~p~vllLDEP------tsgLD~~~~~~i~~~l~~~-~--~g~tIil~TH~~~e~--------~~l--- 495 (614)
+++.++++....|+++++||| |+|||+..+++++++++++ + .+.+++++||+++.+ ..+
T Consensus 135 -~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~ 213 (608)
T 3szr_A 135 -ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPE 213 (608)
T ss_dssp -CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSS
T ss_pred -HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhc
Confidence 122233344568999999999 9999999999999999984 3 367899999998622 222
Q ss_pred -CCEEEEEeCCEEEEEcCHHHH
Q 007178 496 -CDRLGIFVDGSLQCIGNPKEL 516 (614)
Q Consensus 496 -~dri~il~~G~l~~~g~~~~l 516 (614)
+..|+++.++.++..|+.+++
T Consensus 214 g~rtI~VlTK~Dlv~~g~~~~~ 235 (608)
T 3szr_A 214 GDRTIGILTKPDLVDKGTEDKV 235 (608)
T ss_dssp CCSEEEEEECGGGSSSSSTTCC
T ss_pred CCceEEEecchhhcCcccHHHH
Confidence 356899999998888876543
No 103
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.79 E-value=4.2e-21 Score=189.63 Aligned_cols=148 Identities=10% Similarity=0.079 Sum_probs=97.1
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-------CccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHH
Q 007178 319 ALPSGECFGMLGPNGAGKTTFISMMIGITRT-------TSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHL 391 (614)
Q Consensus 319 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-------~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~l 391 (614)
.+++||+++|+||||||||||+++|+|+..| ..|.+++++.+... .+.+++++|+..+++. |+.||+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~-----~~~i~~~~~~~~~~~~-~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR-----PERIREIAQNRGLDPD-EVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC-----HHHHHHHHHHTTSCHH-HHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC-----HHHHHHHHHHcCCCHH-HHhhcE
Confidence 7999999999999999999999999996555 34477777755311 1234555666555544 555554
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhH-HHHHHHHHHH-------hCCCCEEEEeCCCCCCCH
Q 007178 392 LFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM-KRRLSVAISL-------IGNPKVVYMDEPSTGLDP 463 (614)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~-kqrl~ia~al-------~~~p~vllLDEPtsgLD~ 463 (614)
.+... .++++ ++.+..++++ ..+|+++++||||+++|+
T Consensus 95 ~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~ 140 (231)
T 4a74_A 95 YVARA----------------------------------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRS 140 (231)
T ss_dssp EEEEC----------------------------------CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHH
T ss_pred EEEec----------------------------------CChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhcc
Confidence 33211 11111 1222333333 358999999999999998
Q ss_pred H-------HH-----HHHHHHHHHh-c-CCceEEEEcCCHHH----HHhhCCEEEEEeCCE
Q 007178 464 A-------SR-----NNLWNVVKRA-K-QGRAIILTTHSMEE----AEALCDRLGIFVDGS 506 (614)
Q Consensus 464 ~-------~~-----~~i~~~l~~~-~-~g~tIil~TH~~~e----~~~l~dri~il~~G~ 506 (614)
. .+ +++++.+.++ + .|.|||++||.+++ ++..||++++|++|+
T Consensus 141 ~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 141 EYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred ccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 3 22 2566666664 3 49999999996666 889999999998753
No 104
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.77 E-value=4.4e-22 Score=195.01 Aligned_cols=145 Identities=14% Similarity=0.099 Sum_probs=118.3
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCC--CCCCHHHHHHHHhhh
Q 007178 320 LPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLW--ETLTGREHLLFYGRL 397 (614)
Q Consensus 320 i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~--~~lTv~e~l~~~~~~ 397 (614)
.++|+++||+||||||||||+++|+|++.| .++|++|++.++ ..+|++++..+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~-- 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNY-- 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCC--
Confidence 578999999999999999999999999865 489999998876 5689999876532
Q ss_pred cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHH----HHHHHHHHHhCCCCEEEEeCCCCC-------CCHHHH
Q 007178 398 KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK----RRLSVAISLIGNPKVVYMDEPSTG-------LDPASR 466 (614)
Q Consensus 398 ~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~k----qrl~ia~al~~~p~vllLDEPtsg-------LD~~~~ 466 (614)
+.+.....+++.+.++.+++.+ ..+.++.++|+|++ ||+++|++++.+|+++++||||++ ||+...
T Consensus 60 -~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~ 136 (211)
T 3asz_A 60 -DHPDAFDLALYLEHAQALLRGL--PVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADAD 136 (211)
T ss_dssp -TSGGGBCHHHHHHHHHHHHTTC--CEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHH
T ss_pred -CChhhhhHHHHHHHHHHHHcCC--CcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHH
Confidence 1122223456778888888863 56778999999974 688999999999999999999999 999999
Q ss_pred HHHHHHHHHh--cCCceEEEEcCCHH
Q 007178 467 NNLWNVVKRA--KQGRAIILTTHSME 490 (614)
Q Consensus 467 ~~i~~~l~~~--~~g~tIil~TH~~~ 490 (614)
.++++.+++. .+|+|++.++|++.
T Consensus 137 ~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 137 ERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999998763 46999999999853
No 105
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.76 E-value=1e-20 Score=187.63 Aligned_cols=146 Identities=17% Similarity=0.231 Sum_probs=107.7
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCH----HHHH
Q 007178 318 LALPSGECFGMLGPNGAGKTTFISMMIGITRT--TSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTG----REHL 391 (614)
Q Consensus 318 l~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p--~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv----~e~l 391 (614)
-..++|++++|+||||||||||+++|+|+.+| .+|.|.+.+.+.+. ..++.++|+||++.+|+.+++ .||+
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~---~e~~gi~y~fq~~~~f~~~~~~~~f~E~~ 87 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP---GEVHGEHYFFVNHDEFKEMISRDAFLEHA 87 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT---TCCBTTTBEECCHHHHHHHHHTTCEEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc---ccccCceEEECCHHHHHHHHhcCHHHHHH
Confidence 36789999999999999999999999999986 78999998876542 234679999998777766666 4544
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHH
Q 007178 392 LFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN 471 (614)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~ 471 (614)
.+++..+|.+ ++.+++ ++..++++||| ||+.+++++++
T Consensus 88 ~~~~~~yg~~----~~~v~~---------------------------------~l~~G~illLD-----LD~~~~~~i~~ 125 (219)
T 1s96_A 88 EVFGNYYGTS----REAIEQ---------------------------------VLATGVDVFLD-----IDWQGAQQIRQ 125 (219)
T ss_dssp EETTEEEEEE----HHHHHH---------------------------------HHTTTCEEEEE-----CCHHHHHHHHH
T ss_pred HHHhccCCCC----HHHHHH---------------------------------HHhcCCeEEEE-----ECHHHHHHHHH
Confidence 4333222221 112222 23346999999 99999999999
Q ss_pred HHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHHhc
Q 007178 472 VVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 520 (614)
Q Consensus 472 ~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 520 (614)
.+. +++||+++||+++++++ |+ +..| .++++++.+++
T Consensus 126 ~l~---~~~tI~i~th~~~~l~~---Rl--~~rG----~~~~e~i~~rl 162 (219)
T 1s96_A 126 KMP---HARSIFILPPSKIELDR---RL--RGRG----QDSEEVIAKRM 162 (219)
T ss_dssp HCT---TCEEEEEECSSHHHHHH---HH--HTTS----CSCHHHHHHHH
T ss_pred Hcc---CCEEEEEECCCHHHHHH---HH--HHcC----CCCHHHHHHHH
Confidence 876 68999999999999876 43 6777 57888887764
No 106
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.76 E-value=1.5e-19 Score=178.24 Aligned_cols=169 Identities=16% Similarity=0.067 Sum_probs=118.7
Q ss_pred cceeeeeeE-EEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc-HHHhhcceEEEcCCCCCCCCCCH
Q 007178 310 KVAVNGLSL-ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDRIYTSMGVCPQEDLLWETLTG 387 (614)
Q Consensus 310 ~~~l~~isl-~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~-~~~~~~~ig~~~Q~~~l~~~lTv 387 (614)
...|+++.. .+++|++++|+||||||||||++.|++...+++|.+.+.+.+.... .......+|+.+|..... .+++
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 87 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KLII 87 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TEEE
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CEEE
Confidence 568999988 8999999999999999999999999998888888888776554321 111112344444431100 0000
Q ss_pred HHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCC--EEEEeCCCCCC--CH
Q 007178 388 REHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK--VVYMDEPSTGL--DP 463 (614)
Q Consensus 388 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~--vllLDEPtsgL--D~ 463 (614)
+.... +..+ . .+. ....|.+++++...+.+...+|+ ++++||||+++ |+
T Consensus 88 ---------~~~~~------------~~~~-~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~ 140 (235)
T 2w0m_A 88 ---------IDALM------------KEKE-D--QWS---LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKP 140 (235)
T ss_dssp ---------EECCC-----------------C--TTB---CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCG
T ss_pred ---------Eeccc------------cccC-c--eee---ecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCH
Confidence 00000 0000 1 011 12349999998888888888999 99999999887 99
Q ss_pred HHHHHHHHHHHHh-c-CCceEEEEcCCH--------HHHHhhCCEEEEEeCCE
Q 007178 464 ASRNNLWNVVKRA-K-QGRAIILTTHSM--------EEAEALCDRLGIFVDGS 506 (614)
Q Consensus 464 ~~~~~i~~~l~~~-~-~g~tIil~TH~~--------~e~~~l~dri~il~~G~ 506 (614)
..++++++.|+++ + .|.|||++||++ ..++.+||++++|++.+
T Consensus 141 ~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 141 AMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp GGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 9999999999885 3 599999999999 45899999999998764
No 107
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.76 E-value=2e-20 Score=194.35 Aligned_cols=149 Identities=16% Similarity=0.096 Sum_probs=109.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcH-----HH--hhcceEEEcCCCCCCCCCCHHHHHHHH
Q 007178 322 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM-----DR--IYTSMGVCPQEDLLWETLTGREHLLFY 394 (614)
Q Consensus 322 ~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~-----~~--~~~~ig~~~Q~~~l~~~lTv~e~l~~~ 394 (614)
+|++++|+||||||||||+++|+|+++|++|+|.+.|.|+.... .. .+..+++++|++.++|.+|++||+.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999985321 11 245799999999999989999999764
Q ss_pred hhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 007178 395 GRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVK 474 (614)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~ 474 (614)
. .++.. ..+++..|+.+ ..+..+ +...|||+++|||++.+|+.++| +||+.+++.+++.++
T Consensus 181 ~-~~~~d--------~~llDt~G~~~--~~~~~~---~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~ 241 (304)
T 1rj9_A 181 K-ARGYD--------LLFVDTAGRLH--TKHNLM---EELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAK 241 (304)
T ss_dssp H-HHTCS--------EEEECCCCCCT--TCHHHH---HHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHH
T ss_pred H-hCCCC--------EEEecCCCCCC--chHHHH---HHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHH
Confidence 2 11110 01334445432 233333 44458999999999999994444 455555556666676
Q ss_pred Hh-c-CCceEEEEcCCH
Q 007178 475 RA-K-QGRAIILTTHSM 489 (614)
Q Consensus 475 ~~-~-~g~tIil~TH~~ 489 (614)
+. + .|.|+|++||+.
T Consensus 242 ~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 242 KFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp HHHHHHCCSEEEEECTT
T ss_pred HHHHHcCCcEEEEECCc
Confidence 64 2 389999999984
No 108
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.76 E-value=3e-21 Score=187.02 Aligned_cols=159 Identities=18% Similarity=0.123 Sum_probs=108.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc
Q 007178 323 GECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG 402 (614)
Q Consensus 323 Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~ 402 (614)
|++++|+||||||||||+++|+|+++ ++| |.++|++... ....++.+||++|+. ... ++++ +++.. ..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~-~~~~~~~ig~~~~~~--~g~---~~~l---~~~~~-~~ 68 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEE-VRQGGRRIGFDVVTL--SGT---RGPL---SRVGL-EP 68 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCE-EETTSSEEEEEEEET--TSC---EEEE---EECCC-CC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecch-hHhhhceEEEEEEec--ccc---eehh---hcccc-cC
Confidence 78999999999999999999999999 999 9999988743 334578899999975 121 1111 11110 00
Q ss_pred hhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHH-HHHH---HHhCCCCEEEEeC--CCCCCCHHHHHHHHHHHHHh
Q 007178 403 PALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRL-SVAI---SLIGNPKVVYMDE--PSTGLDPASRNNLWNVVKRA 476 (614)
Q Consensus 403 ~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl-~ia~---al~~~p~vllLDE--PtsgLD~~~~~~i~~~l~~~ 476 (614)
. ...- +....++...+|+|||+++ ++++ |+..+|+++|+|| |+..+|+...+.+.+++.
T Consensus 69 ~-----------~~~~--~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~-- 133 (189)
T 2i3b_A 69 P-----------PGKR--ECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS-- 133 (189)
T ss_dssp C-----------SSSC--CEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH--
T ss_pred C-----------cccc--ccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh--
Confidence 0 0000 0123455667999999888 4454 6899999999999 899999987777777665
Q ss_pred cCCceEEE----EcCCHHHHHhhCCEEEEEeCCEEEEEc
Q 007178 477 KQGRAIIL----TTHSMEEAEALCDRLGIFVDGSLQCIG 511 (614)
Q Consensus 477 ~~g~tIil----~TH~~~e~~~l~dri~il~~G~l~~~g 511 (614)
+..++|+ ++|+.+ ..++|||..+.+|++....
T Consensus 134 -~~~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 134 -TPGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp -CSSCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEECC
T ss_pred -CCCcEEEEEeecCCCCc--hHHHHHHeecCCcEEEEeC
Confidence 3344553 349863 2344555555788887643
No 109
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.76 E-value=1.2e-19 Score=210.25 Aligned_cols=154 Identities=18% Similarity=0.250 Sum_probs=111.0
Q ss_pred cceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-CccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHH
Q 007178 310 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-TSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 388 (614)
Q Consensus 310 ~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~ 388 (614)
+.+++|+||+ ++|++++|+|||||||||++|+|+|+..+ ..| ..+.. .+..+|+++| +++.+++.
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vpa----~~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPA----QKVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSS----SEEEECCCCE---EEEEEC--
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cccch----hcccceeHHH---HHhhCCHH
Confidence 5699999999 99999999999999999999999997432 223 11111 1234666655 55556666
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHH
Q 007178 389 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNN 468 (614)
Q Consensus 389 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~ 468 (614)
|++.. ..+++|+||++ ++.+...+.+|+++|||||++|+|+..+..
T Consensus 661 d~l~~---------------------------------~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~ 706 (800)
T 1wb9_A 661 DDLAS---------------------------------GRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLS 706 (800)
T ss_dssp ------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHH
T ss_pred HHHHh---------------------------------hhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHH
Confidence 55421 11235677765 445556799999999999999999988877
Q ss_pred H-HHHHHHh-c-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcC
Q 007178 469 L-WNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 512 (614)
Q Consensus 469 i-~~~l~~~-~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~ 512 (614)
+ +++++.+ + .|.++|++||+++.+. +||++..+.+|++.+...
T Consensus 707 i~~~ll~~l~~~~g~~vl~~TH~~el~~-l~d~~~~v~n~~~~~~~~ 752 (800)
T 1wb9_A 707 LAWACAENLANKIKALTLFATHYFELTQ-LPEKMEGVANVHLDALEH 752 (800)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSCGGGGG-HHHHSTTEEEEEEEEEEE
T ss_pred HHHHHHHHHHhccCCeEEEEeCCHHHHH-HhhhhhceEEEEEEEEEc
Confidence 5 8888875 4 4899999999998764 899988889999887643
No 110
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.73 E-value=2.9e-20 Score=181.01 Aligned_cols=174 Identities=14% Similarity=0.042 Sum_probs=101.5
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCC-----CCCccEEEEcCeeCCCcH
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT-----RTTSGTAYVQGLDIRTDM 365 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~-----~p~sG~i~i~G~~i~~~~ 365 (614)
+++++|++|.|+ ..++++ |.+++|+.++|+|+||||||||++.|+|.. .|+.|++...+.-....
T Consensus 3 ~l~~~~~~~~~~-------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~- 72 (210)
T 1pui_A 3 NLNYQQTHFVMS-------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD- 72 (210)
T ss_dssp --------CEEE-------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-
T ss_pred chhhhhhhheee-------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-
Confidence 478999999995 247888 899999999999999999999999999998 88999876533110000
Q ss_pred HHhhcceEEEcCCCCCC----CCCC---HHHHHHHHhhh-cC-----------CCchhHHHHHHHHHHHcCCCCCCcccc
Q 007178 366 DRIYTSMGVCPQEDLLW----ETLT---GREHLLFYGRL-KN-----------LKGPALTQAVEESLKSVNLFHGGVADK 426 (614)
Q Consensus 366 ~~~~~~ig~~~Q~~~l~----~~lT---v~e~l~~~~~~-~~-----------~~~~~~~~~~~~~l~~~~L~~~~~~~~ 426 (614)
.+-+ .+.+... +.-. .+..+..+... .. .......+++.++++..++.. -....
T Consensus 73 -----~~~l-~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~v~n 145 (210)
T 1pui_A 73 -----GKRL-VDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAV-LVLLT 145 (210)
T ss_dssp -----TEEE-EECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCE-EEEEE
T ss_pred -----CEEE-EECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCe-EEEEe
Confidence 0000 0111100 0000 11112222110 00 011122345566777777752 12366
Q ss_pred cCCCCChhHHHH-HHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCce
Q 007178 427 QAGKYSGGMKRR-LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRA 481 (614)
Q Consensus 427 ~~~~LSgG~kqr-l~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~t 481 (614)
++..+|+||||| +..+++++.+|+.+++|||||++|+...+++++.|.+. .+|.+
T Consensus 146 K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 146 KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 788999999999 89999999999999999999999999999999999874 44543
No 111
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.73 E-value=1.7e-22 Score=194.59 Aligned_cols=173 Identities=13% Similarity=0.069 Sum_probs=118.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc
Q 007178 323 GECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG 402 (614)
Q Consensus 323 Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~ 402 (614)
|++++|+|||||||||++++|++ |.+|.++++|.++... ...|+++|.....+.+|+++++.+.+.......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 73 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM-----VVGGYRPPWESDELLALTWKNITDLTVNFLLAQ 73 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT-----CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh-----hccccccCccchhHHHHHHHHHHHHHHHHHhcC
Confidence 78999999999999999999997 6789999998665321 246788887655556688888876543211000
Q ss_pred hhHHHHHHHHHHHcCCCCCCcccccCCCC--ChhHHHHHHHHH------HHhCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 007178 403 PALTQAVEESLKSVNLFHGGVADKQAGKY--SGGMKRRLSVAI------SLIGNPKVVYMDEPSTGLDPASRNNLWNVVK 474 (614)
Q Consensus 403 ~~~~~~~~~~l~~~~L~~~~~~~~~~~~L--SgG~kqrl~ia~------al~~~p~vllLDEPtsgLD~~~~~~i~~~l~ 474 (614)
. ..+++.+.. ....+...++ |+||+|++.++. +++.+|+...+|| |+|+..++. ++.+.
T Consensus 74 ~------~~ild~~~~---~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~ 140 (189)
T 2bdt_A 74 N------DVVLDYIAF---PDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFE 140 (189)
T ss_dssp C------EEEEESCCC---HHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHH
T ss_pred C------cEEEeeccC---HHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHh
Confidence 0 001111110 0111222334 889988888888 8888998888884 899999999 99988
Q ss_pred Hhc-CCceEEEEcCC-HHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 475 RAK-QGRAIILTTHS-MEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 475 ~~~-~g~tIil~TH~-~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
... .+.+||.+||. +++++++||+|+ ++|++++.|+++.+..
T Consensus 141 ~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~~ 184 (189)
T 2bdt_A 141 SKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLEH 184 (189)
T ss_dssp HTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC--------
T ss_pred hcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchhh
Confidence 764 57899999999 999999999998 9999999999887644
No 112
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.72 E-value=1.6e-19 Score=191.33 Aligned_cols=163 Identities=12% Similarity=0.100 Sum_probs=106.3
Q ss_pred ceeeee-eEEEeCCcEEEEECCCCCcHHHHHHHHhCCC--CCCc----cE-EEEcCeeCCCcHHHhhcceEEEcCCCCCC
Q 007178 311 VAVNGL-SLALPSGECFGMLGPNGAGKTTFISMMIGIT--RTTS----GT-AYVQGLDIRTDMDRIYTSMGVCPQEDLLW 382 (614)
Q Consensus 311 ~~l~~i-sl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~--~p~s----G~-i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~ 382 (614)
..||++ ++.+++|++++|+||||||||||++.++|.. +|++ |+ |++++++.. .++++++++|...++
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~-----~~~~i~~i~q~~~~~ 192 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF-----RPERIREIAQNRGLD 192 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC-----CHHHHHHHHHTTTCC
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC-----CHHHHHHHHHHcCCC
Confidence 466666 6899999999999999999999999999988 6777 67 899987642 124467778876655
Q ss_pred CCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHh-------CCCCEEEEe
Q 007178 383 ETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI-------GNPKVVYMD 455 (614)
Q Consensus 383 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~-------~~p~vllLD 455 (614)
+. ++.||+.+... . -|.+++|++.++++++ .+|+++++|
T Consensus 193 ~~-~v~~ni~~~~~---~------------------------------~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlD 238 (349)
T 1pzn_A 193 PD-EVLKHIYVARA---F------------------------------NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVD 238 (349)
T ss_dssp HH-HHGGGEEEEEC---C------------------------------SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEE
T ss_pred HH-HHhhCEEEEec---C------------------------------ChHHHHHHHHHHHHHHHHhccccCCCCEEEEe
Confidence 44 55555433210 0 1344555555555555 799999999
Q ss_pred CCCCCCCHHH------------HHHHHHHHHHh-c-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcC
Q 007178 456 EPSTGLDPAS------------RNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 512 (614)
Q Consensus 456 EPtsgLD~~~------------~~~i~~~l~~~-~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~ 512 (614)
|||+++|+.. .++++..|+++ + .|.|||+++|..+.....++.......|++.+.++
T Consensus 239 s~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 239 SLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp TSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTC
T ss_pred CchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecC
Confidence 9999999962 34555556554 3 48999999999887665444555566676654443
No 113
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.72 E-value=1.2e-19 Score=196.01 Aligned_cols=165 Identities=20% Similarity=0.185 Sum_probs=101.3
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhh
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 369 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~ 369 (614)
.++.++||++.|++ +.+++|+||+| +|+|+||||||||+++|+|...|+.|. +|.++.......+
T Consensus 10 ~~l~~~~l~~~y~~------~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~---~~~~~~~~~t~~~ 74 (418)
T 2qag_C 10 GYVGFANLPNQVYR------KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEY---PGPSHRIKKTVQV 74 (418)
T ss_dssp -----CCCCCCTTT------TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCC---CSCC-----CCEE
T ss_pred CcEEEEecceeECC------EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCC---CCcccCCccceee
Confidence 36889999999973 57999999998 999999999999999999999876662 3332211111123
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCC
Q 007178 370 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 449 (614)
Q Consensus 370 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p 449 (614)
+.+++++|++.+++.+|+.|++.+...... .+..+.+.+.++ ..++.+++||++||||++.+|
T Consensus 75 ~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~---~~~~~~i~~~i~--------------~~~~~~l~qr~~IaRal~~d~ 137 (418)
T 2qag_C 75 EQSKVLIKEGGVQLLLTIVDTPGFGDAVDN---SNCWQPVIDYID--------------SKFEDYLNAESRVNRRQMPDN 137 (418)
T ss_dssp EEEECC------CEEEEEEECC--------------CHHHHHHHH--------------HHHHHHTTTSCC-CCCCCCCC
T ss_pred eeEEEEEecCCcccceeeeechhhhhhccc---hhhHHHHHHHHH--------------HHHHHHHHHHHHHHHHhccCC
Confidence 568999999988888999999877543211 111111212121 124556778999999999999
Q ss_pred C---EEEEeCCC-CCCCHHHHHHHHHHHHHhcCCceEEEEcCCHH
Q 007178 450 K---VVYMDEPS-TGLDPASRNNLWNVVKRAKQGRAIILTTHSME 490 (614)
Q Consensus 450 ~---vllLDEPt-sgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~ 490 (614)
+ ++++|||| .|||+... ++++.+..+.+||++.|..|
T Consensus 138 ~~~vlL~ldePt~~~L~~~d~----~~lk~L~~~v~iIlVinK~D 178 (418)
T 2qag_C 138 RVQCCLYFIAPSGHGLKPLDI----EFMKRLHEKVNIIPLIAKAD 178 (418)
T ss_dssp -CCEEEEECCC-CCSCCHHHH----HHHHHHTTTSEEEEEEESTT
T ss_pred CeeEEEEEecCcccCCCHHHH----HHHHHHhccCcEEEEEEccc
Confidence 9 99999999 69999874 34445555778888877665
No 114
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.70 E-value=2.2e-18 Score=182.62 Aligned_cols=136 Identities=18% Similarity=0.187 Sum_probs=96.4
Q ss_pred cceeeeeeE-------EEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC-ccEEEEcCeeCCCcHHHhhcceEEEcCCCCC
Q 007178 310 KVAVNGLSL-------ALPSGECFGMLGPNGAGKTTFISMMIGITRTT-SGTAYVQGLDIRTDMDRIYTSMGVCPQEDLL 381 (614)
Q Consensus 310 ~~~l~~isl-------~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~-sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l 381 (614)
...++++.+ ...+|++++|+||||||||||+++|+|+++|+ +|.|...+.++... .+...++++|....
T Consensus 103 ~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~---~~~~~~~v~q~~~~ 179 (356)
T 3jvv_A 103 VLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFV---HESKKCLVNQREVH 179 (356)
T ss_dssp CCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSC---CCCSSSEEEEEEBT
T ss_pred CCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhh---hhccccceeeeeec
Confidence 345666665 67889999999999999999999999999997 56665444333211 12233455554322
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCC
Q 007178 382 WETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGL 461 (614)
Q Consensus 382 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgL 461 (614)
...++..+ +||+||..+|+++++||||
T Consensus 180 ~~~~~~~~--------------------------------------------------~La~aL~~~PdvillDEp~--- 206 (356)
T 3jvv_A 180 RDTLGFSE--------------------------------------------------ALRSALREDPDIILVGEMR--- 206 (356)
T ss_dssp TTBSCHHH--------------------------------------------------HHHHHTTSCCSEEEESCCC---
T ss_pred cccCCHHH--------------------------------------------------HHHHHhhhCcCEEecCCCC---
Confidence 22222211 9999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeCC
Q 007178 462 DPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDG 505 (614)
Q Consensus 462 D~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~G 505 (614)
|++..+.+.+ ....|++|++|+|+.+.+ ..|||++.|..|
T Consensus 207 d~e~~~~~~~---~~~~G~~vl~t~H~~~~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 207 DLETIRLALT---AAETGHLVFGTLHTTSAA-KTIDRVVDVFPA 246 (356)
T ss_dssp SHHHHHHHHH---HHHTTCEEEEEESCSSHH-HHHHHHHHTSCH
T ss_pred CHHHHHHHHH---HHhcCCEEEEEEccChHH-HHHHHHhhhcCc
Confidence 6555333222 245699999999999988 679999888655
No 115
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.69 E-value=1.3e-17 Score=170.68 Aligned_cols=153 Identities=12% Similarity=0.116 Sum_probs=105.9
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhc
Q 007178 319 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK 398 (614)
Q Consensus 319 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~ 398 (614)
.+++|++++|+||||||||||++.+++... .|++ +.|.+... ...+.|+..+... -.+.+.+. .+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~-~~g~~~~~-----~~~v~~~~~e~~~---~~~~~r~~---~~- 90 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPD-LLEVGELP-----TGPVIYLPAEDPP---TAIHHRLH---AL- 90 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCC-TTCCCCCC-----CCCEEEEESSSCH---HHHHHHHH---HH-
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCC-cCCCccCC-----CccEEEEECCCCH---HHHHHHHH---HH-
Confidence 478999999999999999999999998664 5666 34554321 2357777655421 01111221 11
Q ss_pred CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCC--CCCHHHH---HHHHHHH
Q 007178 399 NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPST--GLDPASR---NNLWNVV 473 (614)
Q Consensus 399 ~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPts--gLD~~~~---~~i~~~l 473 (614)
+.... ....+++++.+++.+ ..++++..||+||+|++ ++++.+|+++++||||+ ++|+..+ +++++.|
T Consensus 91 g~~~~--~~~~~~~~~~l~l~~--~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L 163 (279)
T 1nlf_A 91 GAHLS--AEERQAVADGLLIQP--LIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRM 163 (279)
T ss_dssp HTTSC--HHHHHHHHHHEEECC--CTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHH
T ss_pred HhhcC--hhhhhhccCceEEee--cCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHH
Confidence 11111 234566788888863 67889999999998865 68888999999999999 9998544 7788888
Q ss_pred HHh-c-CCceEEEEcCCHHHHH
Q 007178 474 KRA-K-QGRAIILTTHSMEEAE 493 (614)
Q Consensus 474 ~~~-~-~g~tIil~TH~~~e~~ 493 (614)
+++ + .|+|||+++|+.++.+
T Consensus 164 ~~l~~~~g~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 164 EAIAADTGCSIVFLHHASKGAA 185 (279)
T ss_dssp HHHHHHHCCEEEEEEEC-----
T ss_pred HHHHHHcCCEEEEEecCCCccc
Confidence 775 3 4999999999998764
No 116
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.68 E-value=9e-22 Score=209.77 Aligned_cols=177 Identities=12% Similarity=0.088 Sum_probs=115.6
Q ss_pred eeeeeeEEEeC--CcEEEEECCCCCcHHHHHHHHhCCCCCCc----cEEEEc----CeeCCCcHHHhhcceEEEcCCCCC
Q 007178 312 AVNGLSLALPS--GECFGMLGPNGAGKTTFISMMIGITRTTS----GTAYVQ----GLDIRTDMDRIYTSMGVCPQEDLL 381 (614)
Q Consensus 312 ~l~~isl~i~~--Gei~~LlG~NGaGKTTll~~l~Gl~~p~s----G~i~i~----G~~i~~~~~~~~~~ig~~~Q~~~l 381 (614)
..+.|+++|++ |+.++|+||||||||||+|+|+|+++|++ |+++++ |.++....... ++|++++|+..+
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~~ 235 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYID 235 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHHH
Confidence 34679999999 99999999999999999999999999999 887764 32221111111 224444443211
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHh-CCCCEEEEeC---C
Q 007178 382 WETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI-GNPKVVYMDE---P 457 (614)
Q Consensus 382 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~-~~p~vllLDE---P 457 (614)
+. .|+.||+.+ ++. +..++.+..+|+|++|+..+++++. .+|++++||| |
T Consensus 236 ~~-~t~~~nl~~----------------------~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p 289 (365)
T 1lw7_A 236 YA-VRHSHKIAF----------------------IDT---DFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTE 289 (365)
T ss_dssp HH-HHHCSSEEE----------------------ESS---CHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC
T ss_pred HH-HhccCCEEE----------------------EeC---CchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCC
Confidence 11 122222211 011 1223334456677788888888764 6999999999 6
Q ss_pred C------CCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHhhCCEEEEEeCCEEEEEcCHHHHHH
Q 007178 458 S------TGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 518 (614)
Q Consensus 458 t------sgLD~~~~~~i~~~l~~~-~-~g~tIil~TH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 518 (614)
+ .++|+..|..+.+.++++ + .|.+|++++|. ++.+++|+++.++++ +...+++++|++
T Consensus 290 ~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i~~--~l~~~~~~~~~~ 355 (365)
T 1lw7_A 290 WVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVIEK--VLNEEEISELQN 355 (365)
T ss_dssp -----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHHHH--HTSCCCCSSCCC
T ss_pred cccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHH--HhcccchhHhhc
Confidence 5 589999999999999875 3 38999999976 577788888877754 445566666544
No 117
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.65 E-value=6.8e-16 Score=147.13 Aligned_cols=83 Identities=22% Similarity=0.196 Sum_probs=72.2
Q ss_pred cccccCCCCChhHHHHHHHHHHHh----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCE
Q 007178 423 VADKQAGKYSGGMKRRLSVAISLI----GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDR 498 (614)
Q Consensus 423 ~~~~~~~~LSgG~kqrl~ia~al~----~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dr 498 (614)
..++++..||||||||++||++++ .+|+++||||||+|||+.+++.+++.|++..++.++|++||+... ...|||
T Consensus 57 ~~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~-~~~ad~ 135 (173)
T 3kta_B 57 KDVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVM-MANADK 135 (173)
T ss_dssp SSCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHH-HTTCSE
T ss_pred ccccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHH-HHhCCE
Confidence 456778899999999999999997 457999999999999999999999999988777899999999765 468999
Q ss_pred EEEE--eCCE
Q 007178 499 LGIF--VDGS 506 (614)
Q Consensus 499 i~il--~~G~ 506 (614)
++.+ .+|.
T Consensus 136 i~~v~~~~g~ 145 (173)
T 3kta_B 136 IIGVSMRDGV 145 (173)
T ss_dssp EEEEEEETTE
T ss_pred EEEEEecCCE
Confidence 9855 4554
No 118
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.65 E-value=1.2e-19 Score=174.37 Aligned_cols=162 Identities=9% Similarity=0.005 Sum_probs=105.7
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhc
Q 007178 319 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK 398 (614)
Q Consensus 319 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~ 398 (614)
.+++|++++|+|||||||||++++|+|. |+.|.|.++|.++.... ..++.++|++|+.. +.+|+.|++.+.+...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~-~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~ 79 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYI-KHGRIDPWLPQSHQ--QNRMIMQIAADVAGRY 79 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTC-CSSCCCTTSSSHHH--HHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhh-hcccccCCccchhh--hhHHHHHHHHHHHHHH
Confidence 4789999999999999999999999998 78999999997653211 11234678888654 4578999987754321
Q ss_pred CCCchhHHHHHHHHHHHcCCCCCCcc--cccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q 007178 399 NLKGPALTQAVEESLKSVNLFHGGVA--DKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA 476 (614)
Q Consensus 399 ~~~~~~~~~~~~~~l~~~~L~~~~~~--~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~ 476 (614)
...... ..++.+++..++. ... +.++..+|+|++||++++|++..+|+++ +|+..++.+++.++.+
T Consensus 80 ~~~~~~--~~~~~~~~~~~l~--~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l 147 (191)
T 1zp6_A 80 AKEGYF--VILDGVVRPDWLP--AFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADL 147 (191)
T ss_dssp HHTSCE--EEECSCCCTTTTH--HHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCC
T ss_pred hccCCe--EEEeccCcHHHHH--HHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhcc
Confidence 000000 0011111112221 111 3456789999999999999999999876 6899888888888664
Q ss_pred cC-CceEEEEcCCHHHHHhhCCEE
Q 007178 477 KQ-GRAIILTTHSMEEAEALCDRL 499 (614)
Q Consensus 477 ~~-g~tIil~TH~~~e~~~l~dri 499 (614)
.+ +..+|-++|. .+++.+++|
T Consensus 148 ~~~~~~~i~t~~~--~~~~~~~~i 169 (191)
T 1zp6_A 148 GAFEHHVLPVSGK--DTDQALQSA 169 (191)
T ss_dssp GGGGGGEEECTTC--CTTTTTTTT
T ss_pred CcccccEEECCCC--CHHHHHHHH
Confidence 32 3445555431 233345544
No 119
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.63 E-value=1.1e-19 Score=190.26 Aligned_cols=160 Identities=14% Similarity=0.122 Sum_probs=113.6
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCC--------CCCccEEEEcCeeCCCc----------------HHHhhcceEEE---c
Q 007178 324 ECFGMLGPNGAGKTTFISMMIGIT--------RTTSGTAYVQGLDIRTD----------------MDRIYTSMGVC---P 376 (614)
Q Consensus 324 ei~~LlG~NGaGKTTll~~l~Gl~--------~p~sG~i~i~G~~i~~~----------------~~~~~~~ig~~---~ 376 (614)
++++|+|+||||||||+|.|.|+. .|+.|+|.++|.++... ....++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 689999999999999999999997 88999999999887532 12344567877 6
Q ss_pred CCCCCCCCCCHHHHHHHH--hhh-cCC-CchhH--HHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCC
Q 007178 377 QEDLLWETLTGREHLLFY--GRL-KNL-KGPAL--TQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 450 (614)
Q Consensus 377 Q~~~l~~~lTv~e~l~~~--~~~-~~~-~~~~~--~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~ 450 (614)
|+..++++.++.|+..+. ..+ +.. ...+. ..+++.++..+++.+ ..++.. ++|+||+||+..+++++.+|+
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~--~~~~~~-~ls~g~~Q~~~ad~ill~k~d 161 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVH--ADEQMN-QFTIAQSQVGYADRILLTKTD 161 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTT--HHHHHH-HCHHHHHHHHTCSEEEEECTT
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHH--HHHHHh-hchHHHHHHHhCCEEEEECcc
Confidence 877766677887776542 100 000 00000 111223344555542 344433 799999999988888888888
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCC
Q 007178 451 VVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCD 497 (614)
Q Consensus 451 vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~d 497 (614)
++ ||| +++.+.+++++.+.+|+++||+..+++.+.|
T Consensus 162 l~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~~~~~l~~ 197 (318)
T 1nij_A 162 VA--GEA---------EKLHERLARINARAPVYTVTHGDIDLGLLFN 197 (318)
T ss_dssp TC--SCT---------HHHHHHHHHHCSSSCEEECCSSCCCGGGGSC
T ss_pred cC--CHH---------HHHHHHHHHhCCCCeEEEecccCCCHHHHhC
Confidence 77 888 7788888887788999999998766666654
No 120
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.63 E-value=1.1e-19 Score=191.68 Aligned_cols=173 Identities=17% Similarity=0.174 Sum_probs=124.1
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcH-----
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM----- 365 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~----- 365 (614)
+++++|+++.|+ .+.+++++|+++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++....
T Consensus 29 ~ie~~~~~~~~~------~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~ 102 (337)
T 2qm8_A 29 LAESRRADHRAA------VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSI 102 (337)
T ss_dssp HHTCSSHHHHHH------HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCS
T ss_pred HHeeCCcccccC------hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccch
Confidence 466789999996 357999999999999999999999999999999999999999999999999875321
Q ss_pred HHhhcceEEEcCCCCCCCCCC------------HHHHHHHH-----------------------------hhhcCCC-ch
Q 007178 366 DRIYTSMGVCPQEDLLWETLT------------GREHLLFY-----------------------------GRLKNLK-GP 403 (614)
Q Consensus 366 ~~~~~~ig~~~Q~~~l~~~lT------------v~e~l~~~-----------------------------~~~~~~~-~~ 403 (614)
...++++|+++|++.++...+ ++|.+... ..+.... .+
T Consensus 103 ~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~ 182 (337)
T 2qm8_A 103 LGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGD 182 (337)
T ss_dssp SCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC--
T ss_pred HHHhhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcc
Confidence 234667999999988876321 23332111 0000000 01
Q ss_pred hH---HHHHHHHHHHcCCCCCCcccc-cCCCCChhHHHHHHHHHHHhC------CCCEEEEeCCCCCCCHHHHHHHHHHH
Q 007178 404 AL---TQAVEESLKSVNLFHGGVADK-QAGKYSGGMKRRLSVAISLIG------NPKVVYMDEPSTGLDPASRNNLWNVV 473 (614)
Q Consensus 404 ~~---~~~~~~~l~~~~L~~~~~~~~-~~~~LSgG~kqrl~ia~al~~------~p~vllLDEPtsgLD~~~~~~i~~~l 473 (614)
+. ++.+.+....+.++ +.|. ...++|+|++|++..|++++. +|+++. ||++|+...+++++.|
T Consensus 183 ~~~~i~~~i~~~~~ivvlN---K~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I 255 (337)
T 2qm8_A 183 ELQGIKKGIFELADMIAVN---KADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRI 255 (337)
T ss_dssp ----CCTTHHHHCSEEEEE---CCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHH
T ss_pred cHHHHHHHHhccccEEEEE---chhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHH
Confidence 10 01112222233332 3453 335689999999999999987 688886 9999999999999999
Q ss_pred HHh
Q 007178 474 KRA 476 (614)
Q Consensus 474 ~~~ 476 (614)
.+.
T Consensus 256 ~~~ 258 (337)
T 2qm8_A 256 EDH 258 (337)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 121
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.63 E-value=7.7e-17 Score=160.31 Aligned_cols=146 Identities=12% Similarity=0.186 Sum_probs=87.8
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhC--CCCC-----CccEEEEcCeeCCC--cHHHhhcceEEEcCCCCCCCCCCHHH
Q 007178 319 ALPSGECFGMLGPNGAGKTTFISMMIG--ITRT-----TSGTAYVQGLDIRT--DMDRIYTSMGVCPQEDLLWETLTGRE 389 (614)
Q Consensus 319 ~i~~Gei~~LlG~NGaGKTTll~~l~G--l~~p-----~sG~i~i~G~~i~~--~~~~~~~~ig~~~Q~~~l~~~lTv~e 389 (614)
.+++|++++|+||||||||||++.|++ +.+| ..|.+++++.+... ...+..+.+|+.+|+ +.+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~--------~~~ 91 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD--------VLD 91 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH--------HHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH--------Hhh
Confidence 589999999999999999999999999 5665 67888888876311 112233344544331 112
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHH-HHHHHHHHh--CCCCEEEEeCCCCCCCHH--
Q 007178 390 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKR-RLSVAISLI--GNPKVVYMDEPSTGLDPA-- 464 (614)
Q Consensus 390 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kq-rl~ia~al~--~~p~vllLDEPtsgLD~~-- 464 (614)
|+.+ ....+..+.. .+.-+.+++ .+|+++++|||++.+|+.
T Consensus 92 ~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~ 137 (243)
T 1n0w_A 92 NVAY----------------------------------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYS 137 (243)
T ss_dssp TEEE----------------------------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC----
T ss_pred CeEE----------------------------------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhc
Confidence 1110 0112223222 122222222 689999999999999985
Q ss_pred -----H-----HHHHHHHHHHh-c-CCceEEEEcCCHHHHHh-------------------hCCEEEEEeCCE
Q 007178 465 -----S-----RNNLWNVVKRA-K-QGRAIILTTHSMEEAEA-------------------LCDRLGIFVDGS 506 (614)
Q Consensus 465 -----~-----~~~i~~~l~~~-~-~g~tIil~TH~~~e~~~-------------------l~dri~il~~G~ 506 (614)
. .++++..++++ + .|.|||+++|..++.+. +||++++|+.|+
T Consensus 138 ~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~~ 210 (243)
T 1n0w_A 138 GRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGR 210 (243)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEECS
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEcC
Confidence 3 23455555553 3 39999999998877654 799999998763
No 122
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.63 E-value=1.5e-16 Score=155.72 Aligned_cols=154 Identities=15% Similarity=0.111 Sum_probs=101.2
Q ss_pred cceeeeeeE-EEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHH
Q 007178 310 KVAVNGLSL-ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 388 (614)
Q Consensus 310 ~~~l~~isl-~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~ 388 (614)
...||++.. .+++|++++|.||||||||||++.|++ ++..+.+++++.+ . .+..
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~-------------------~----~~~~ 60 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG-------------------G----FSPE 60 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC-------------------C----CCHH
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC-------------------C----CCHH
Confidence 457777775 799999999999999999999999999 4333444444322 0 1111
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhH--HHHHHHHHHHhCC-CCEEEEeCCCCCCCHHH
Q 007178 389 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM--KRRLSVAISLIGN-PKVVYMDEPSTGLDPAS 465 (614)
Q Consensus 389 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~--kqrl~ia~al~~~-p~vllLDEPtsgLD~~~ 465 (614)
.+.-.....+... +++++.+. +.++|+++ +++++.+++++.+ |+++++||||+++|+..
T Consensus 61 -~~~~~~~~~~~~~-------~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~ 122 (220)
T 2cvh_A 61 -RLVQMAETRGLNP-------EEALSRFI----------LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEE 122 (220)
T ss_dssp -HHHHHHHTTTCCH-------HHHHHHEE----------EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGG
T ss_pred -HHHHHHHhcCCCh-------HHHhhcEE----------EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcC
Confidence 1110011111111 12223222 22344553 5688888999986 99999999999999843
Q ss_pred H--------HHHHHHHHHh-c-CCceEEEEcCCHH-------------HHHhhCCEEEEEeCCE
Q 007178 466 R--------NNLWNVVKRA-K-QGRAIILTTHSME-------------EAEALCDRLGIFVDGS 506 (614)
Q Consensus 466 ~--------~~i~~~l~~~-~-~g~tIil~TH~~~-------------e~~~l~dri~il~~G~ 506 (614)
. .++.+.|+++ + .|.|||+++|... .++..||++++|++..
T Consensus 123 ~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~~ 186 (220)
T 2cvh_A 123 NRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKLP 186 (220)
T ss_dssp GSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEECS
T ss_pred chHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEec
Confidence 2 3344446664 3 3899999999876 5678999999998653
No 123
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.62 E-value=1.7e-18 Score=162.78 Aligned_cols=90 Identities=23% Similarity=0.189 Sum_probs=75.8
Q ss_pred EEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceE
Q 007178 294 SDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMG 373 (614)
Q Consensus 294 ~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig 373 (614)
.+|+++.|+ ++.+++++||++++|++++|+||||||||||+|+|+|++ |++|+|.++|+++..... . + .
T Consensus 10 ~~~~~~~~g------~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~-~-~--~ 78 (158)
T 1htw_A 10 DEFSMLRFG------KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYN-I-A--G 78 (158)
T ss_dssp SHHHHHHHH------HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEE-E-T--T
T ss_pred CHHHHHHHH------HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeecc-C-C--C
Confidence 356677886 367999999999999999999999999999999999999 999999999988753211 1 1 2
Q ss_pred EEcCCCCCCCCCCHHHHHHHHh
Q 007178 374 VCPQEDLLWETLTGREHLLFYG 395 (614)
Q Consensus 374 ~~~Q~~~l~~~lTv~e~l~~~~ 395 (614)
+++|+..+| .+|+.||+.+.+
T Consensus 79 ~~~q~~~l~-~ltv~e~l~~~g 99 (158)
T 1htw_A 79 KMIYHFDLY-RLADPEELEFMG 99 (158)
T ss_dssp EEEEEEECT-TCSCTTHHHHST
T ss_pred cceeccccc-cCCcHHHHHHcC
Confidence 799999899 899999997644
No 124
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.62 E-value=2.5e-18 Score=172.78 Aligned_cols=142 Identities=19% Similarity=0.177 Sum_probs=105.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHh---CCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhh--
Q 007178 322 SGECFGMLGPNGAGKTTFISMMI---GITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGR-- 396 (614)
Q Consensus 322 ~Gei~~LlG~NGaGKTTll~~l~---Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~-- 396 (614)
++++++|+|||||||||++++|+ |+..|++|++.++|.+... .....+++++|+..+++..++.+++.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAST---EVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTC---HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCC---hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47999999999999999999999 9999999999888765322 122345667888888888899999976321
Q ss_pred ------hcCCCchhHHHHHHHHHH--HcC------------CCCCCcccccCCCCChhHHHHHHHHHHH-hCCCCEEEEe
Q 007178 397 ------LKNLKGPALTQAVEESLK--SVN------------LFHGGVADKQAGKYSGGMKRRLSVAISL-IGNPKVVYMD 455 (614)
Q Consensus 397 ------~~~~~~~~~~~~~~~~l~--~~~------------L~~~~~~~~~~~~LSgG~kqrl~ia~al-~~~p~vllLD 455 (614)
+.+.+... .+++.+.+ .++ +. ...++++.+||| |+ +|+ +.+|++++||
T Consensus 103 ~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~--r~~~r~~~~lSg----rv---~al~~~~P~~lllD 171 (246)
T 2bbw_A 103 RGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKD--RLSRRWIHPPSG----RV---YNLDFNPPHVHGID 171 (246)
T ss_dssp TTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHH--HHHTEEEETTTT----EE---EETTTSCCSSTTBC
T ss_pred CCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHH--HHHcCCCcCCCC----Cc---cccccCCCcccccc
Confidence 22333222 22333322 222 21 235778889999 55 778 9999999999
Q ss_pred ----CCCCCCCHHHHHHHHHHHHHhc
Q 007178 456 ----EPSTGLDPASRNNLWNVVKRAK 477 (614)
Q Consensus 456 ----EPtsgLD~~~~~~i~~~l~~~~ 477 (614)
|||+|+|+.+++.+++.++++.
T Consensus 172 ~~~~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 172 DVTGEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp TTTCCBCBCCGGGSHHHHHHHHHHHH
T ss_pred cccccccccCCCCcHHHHHHHHHHHH
Confidence 9999999999999999998764
No 125
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.62 E-value=9.1e-17 Score=171.49 Aligned_cols=130 Identities=21% Similarity=0.200 Sum_probs=101.5
Q ss_pred eeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC-ccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHH
Q 007178 312 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT-SGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREH 390 (614)
Q Consensus 312 ~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~-sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~ 390 (614)
++++++ +++|++++|+||||||||||+++|+|+++|+ +|+|.+.|.++.. ..+..+++++|.
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~---~~~~~~~~v~Q~------------ 189 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEY---VFKHKKSIVNQR------------ 189 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCS---CCCCSSSEEEEE------------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhh---hhccCceEEEee------------
Confidence 556655 7899999999999999999999999999998 8999887766532 245678889884
Q ss_pred HHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHH
Q 007178 391 LLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLW 470 (614)
Q Consensus 391 l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~ 470 (614)
.+|+. +..+ +.+++++|..+|+++++|||+ |+.. ++
T Consensus 190 ------------------------~~g~~--------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~---~~ 225 (372)
T 2ewv_A 190 ------------------------EVGED--------TKSF------ADALRAALREDPDVIFVGEMR---DLET---VE 225 (372)
T ss_dssp ------------------------EBTTT--------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHH---HH
T ss_pred ------------------------ecCCC--------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHH---HH
Confidence 13332 1233 469999999999999999999 7765 44
Q ss_pred HHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEe
Q 007178 471 NVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV 503 (614)
Q Consensus 471 ~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~ 503 (614)
..++....|.+|+.|+|+.+ +...|||++.|.
T Consensus 226 ~~l~~~~~g~~vi~t~H~~~-~~~~~~rl~~l~ 257 (372)
T 2ewv_A 226 TALRAAETGHLVFGTLHTNT-AIDTIHRIVDIF 257 (372)
T ss_dssp HHHHHHTTTCEEEECCCCCS-HHHHHHHHHHTS
T ss_pred HHHHHHhcCCEEEEEECcch-HHHHHHHHHHhc
Confidence 45555566899999999966 777899987664
No 126
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.61 E-value=1.8e-17 Score=178.47 Aligned_cols=180 Identities=12% Similarity=0.053 Sum_probs=117.7
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcE--EEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC-cHHH
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGEC--FGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDR 367 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei--~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~-~~~~ 367 (614)
.+++++ ++.|++ ++ ++++||++++|++ +||+||||||||||+|+|+|+. ++|.++.. ....
T Consensus 16 ~l~~~~-~~~y~~------~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~ 79 (427)
T 2qag_B 16 TVPLAG-HVGFDS------LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGV 79 (427)
T ss_dssp -CCCCC-CC-CC--------C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSC
T ss_pred eEEEee-EEEECC------ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccc
Confidence 355667 888863 45 9999999999999 9999999999999999999984 33433321 1112
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcC-CCch----hHHHHHHHHHHHc-CCCCC--CcccccC-----------
Q 007178 368 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKN-LKGP----ALTQAVEESLKSV-NLFHG--GVADKQA----------- 428 (614)
Q Consensus 368 ~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~-~~~~----~~~~~~~~~l~~~-~L~~~--~~~~~~~----------- 428 (614)
.++.+||++|++.+++.+|+.||+.++..... .... ..++..+++++.. ++... ...|.++
T Consensus 80 ~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~ 159 (427)
T 2qag_B 80 QLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTG 159 (427)
T ss_dssp EEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC
T ss_pred eEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCC
Confidence 34579999999998888999999876432110 0001 1344555666654 44210 0122221
Q ss_pred CCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHH-hc-CCceEEEEcCCH
Q 007178 429 GKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR-AK-QGRAIILTTHSM 489 (614)
Q Consensus 429 ~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~-~~-~g~tIil~TH~~ 489 (614)
..|+-.. +.++++|..+++++++|||+..|.+.....+.+.+++ ++ +|.+|+.+|.+-
T Consensus 160 ~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d 219 (427)
T 2qag_B 160 HSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDD 219 (427)
T ss_dssp ---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred CCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence 2455554 7899999999999999999999999999999999986 65 699999998753
No 127
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.60 E-value=6.5e-18 Score=184.29 Aligned_cols=158 Identities=16% Similarity=0.095 Sum_probs=111.6
Q ss_pred eeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcH-----HH--hhcceEEEcCCCCCCCCC
Q 007178 313 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM-----DR--IYTSMGVCPQEDLLWETL 385 (614)
Q Consensus 313 l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~-----~~--~~~~ig~~~Q~~~l~~~l 385 (614)
-+++||++++|++++|+|+||||||||+++|+|+++|++|+|.+.|.|+.... .. .|++++|++|+..+++.+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 46899999999999999999999999999999999999999999988875421 11 356899999998888889
Q ss_pred CHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHh-CCC-CEEEEeCCCCCCCH
Q 007178 386 TGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI-GNP-KVVYMDEPSTGLDP 463 (614)
Q Consensus 386 Tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~-~~p-~vllLDEPtsgLD~ 463 (614)
|+++|+.+... ++.. . -+++..|+.+ ....... -.+|++.+++++. ..| +++|...|++|.|.
T Consensus 363 tV~e~l~~a~~-~~~D------v--VLIDTaGrl~--~~~~lm~----EL~kiv~iar~l~~~~P~evLLvLDattGq~a 427 (503)
T 2yhs_A 363 VIFDAIQAAKA-RNID------V--LIADTAGRLQ--NKSHLME----ELKKIVRVMKKLDVEAPHEVMLTIDASTGQNA 427 (503)
T ss_dssp HHHHHHHHHHH-TTCS------E--EEECCCCSCC--CHHHHHH----HHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHH
T ss_pred HHHHHHHHHHh-cCCC------E--EEEeCCCccc--hhhhHHH----HHHHHHHHHHHhccCCCCeeEEEecCcccHHH
Confidence 99999987643 2211 0 0233444421 1111122 3357888888764 456 46666669988665
Q ss_pred HHHHHHHHHHHHh--cCCceEEEEcCCHHHH
Q 007178 464 ASRNNLWNVVKRA--KQGRAIILTTHSMEEA 492 (614)
Q Consensus 464 ~~~~~i~~~l~~~--~~g~tIil~TH~~~e~ 492 (614)
. +.++.. .-|.|.++.|| +|..
T Consensus 428 l------~~ak~f~~~~~itgvIlTK-LD~t 451 (503)
T 2yhs_A 428 V------SQAKLFHEAVGLTGITLTK-LDGT 451 (503)
T ss_dssp H------HHHHHHHHHTCCSEEEEEC-GGGC
T ss_pred H------HHHHHHHhhcCCCEEEEEc-CCCc
Confidence 4 223333 24789999999 6653
No 128
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.59 E-value=4.8e-16 Score=164.20 Aligned_cols=122 Identities=19% Similarity=0.194 Sum_probs=93.8
Q ss_pred eeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-CCccEEEEc-CeeCCCcHHHhhcceEEEcCCCCCCCCCCHHH
Q 007178 312 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-TTSGTAYVQ-GLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 389 (614)
Q Consensus 312 ~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-p~sG~i~i~-G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e 389 (614)
.++++++. .+|++++|+||||||||||+|+|+|+.+ |++|+|.++ |.+..+ ..++.++++||+..+++..|++|
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~t---t~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHT---TTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC----------------CCCEEEECTTSCEEEECHHHHT
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccc---eEEEEEEEECCCCEecCcccHHH
Confidence 56777765 4799999999999999999999999999 999999987 765422 23467999999999999989998
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 007178 390 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 445 (614)
Q Consensus 390 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al 445 (614)
+ .+.+.+.++..+.+.++++.+++. ++.++...+|| ||+||+++|+++
T Consensus 281 ~-----~l~~l~~~e~~~~~~e~l~~~gl~--~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 281 F-----GLWHLEPEQITQGFVEFHDYLGHC--KYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp C-----CCCCCCHHHHHHTSGGGGGGTTCS--SSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred h-----hhcCCCHHHHHHHHHHHHHHcCCc--hhcCCCcccCC-HHHHHHHHHhcC
Confidence 4 233455566677788999999997 48999999999 999999999764
No 129
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.56 E-value=3e-16 Score=166.85 Aligned_cols=137 Identities=15% Similarity=0.144 Sum_probs=105.3
Q ss_pred eeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEc-CCCCCCCCCCHHHHH
Q 007178 313 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCP-QEDLLWETLTGREHL 391 (614)
Q Consensus 313 l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~-Q~~~l~~~lTv~e~l 391 (614)
++++|+++++|++++|+||||||||||+++|+|+++|++|.|.++|.+-. .....++.+++++ |++.+
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~-~~~~~~~~v~~v~~q~~~~---------- 233 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPEL-FLPDHPNHVHLFYPSEAKE---------- 233 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCC-CCTTCSSEEEEECC---------------
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCcccc-CccccCCEEEEeecCcccc----------
Confidence 39999999999999999999999999999999999999999999985311 1122456789998 65431
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHH
Q 007178 392 LFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN 471 (614)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~ 471 (614)
+ ++++..+|-.|+.++..+|+.+++|||.. .+.++
T Consensus 234 -------------------------~-------------~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~ 268 (361)
T 2gza_A 234 -------------------------E-------------ENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYD 268 (361)
T ss_dssp -------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS-------THHHH
T ss_pred -------------------------c-------------cccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHH
Confidence 0 02233477888889999999999999986 34667
Q ss_pred HHHHhcCC-ceEEEEcCCHHHHHhhCCEEEEEeCCE
Q 007178 472 VVKRAKQG-RAIILTTHSMEEAEALCDRLGIFVDGS 506 (614)
Q Consensus 472 ~l~~~~~g-~tIil~TH~~~e~~~l~dri~il~~G~ 506 (614)
.++.+..| .|++.++|..+ +...+||+..|..|.
T Consensus 269 ~l~~l~~g~~~~l~t~H~~~-~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 269 FINVAASGHGGSITSCHAGS-CELTFERLALMVLQN 303 (361)
T ss_dssp HHHHHHTTCCSCEEEEECSS-HHHHHHHHHHHHTTS
T ss_pred HHHHHhcCCCeEEEEECCCC-HHHHHHHHHHHHhcc
Confidence 77776655 57899999965 777899999888874
No 130
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.55 E-value=1e-15 Score=160.52 Aligned_cols=145 Identities=11% Similarity=0.016 Sum_probs=103.2
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcH-----HHhh--cceEEEcCCCCCCCCCCHHHHH
Q 007178 319 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM-----DRIY--TSMGVCPQEDLLWETLTGREHL 391 (614)
Q Consensus 319 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~-----~~~~--~~ig~~~Q~~~l~~~lTv~e~l 391 (614)
..++|++++|+||||||||||+++|+|+++|++|+|.+.|.|+.... ...+ ..+.+++|...++|.+|++||+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 34789999999999999999999999999999999999999985421 1122 3466999999999999999999
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHH
Q 007178 392 LFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN 471 (614)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~ 471 (614)
.+... .+... -+++..|+.+ ..+....+|| .+++++..++.+++||.+|. +.+.+
T Consensus 205 ~~~~~-~~~d~--------vliDtaG~~~--~~~~l~~eL~-------~i~ral~~de~llvLDa~t~-------~~~~~ 259 (328)
T 3e70_C 205 QHAKA-RGIDV--------VLIDTAGRSE--TNRNLMDEMK-------KIARVTKPNLVIFVGDALAG-------NAIVE 259 (328)
T ss_dssp HHHHH-HTCSE--------EEEEECCSCC--TTTCHHHHHH-------HHHHHHCCSEEEEEEEGGGT-------THHHH
T ss_pred HHHHh-ccchh--------hHHhhccchh--HHHHHHHHHH-------HHHHHhcCCCCEEEEecHHH-------HHHHH
Confidence 86532 11100 0233344431 2233333333 48999998888889995554 34555
Q ss_pred HHHHhc--CCceEEEEcCC
Q 007178 472 VVKRAK--QGRAIILTTHS 488 (614)
Q Consensus 472 ~l~~~~--~g~tIil~TH~ 488 (614)
.++... .+.|+|++||.
T Consensus 260 ~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 260 QARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp HHHHHHHHSCCCEEEEECG
T ss_pred HHHHHHHhcCCCEEEEeCc
Confidence 555543 48999999994
No 131
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.55 E-value=5.7e-18 Score=187.60 Aligned_cols=174 Identities=16% Similarity=0.160 Sum_probs=117.1
Q ss_pred ccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCee-CCCcHHHhhcceEEEcCC---------
Q 007178 309 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD-IRTDMDRIYTSMGVCPQE--------- 378 (614)
Q Consensus 309 ~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~-i~~~~~~~~~~ig~~~Q~--------- 378 (614)
...+++++++.+++|++++|+||||||||||+++|+|+++|++|.|++.|.+ +.... ...+++..|.
T Consensus 246 ~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~~~~~~~~ 322 (511)
T 2oap_1 246 PSGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGMGEGEIDM 322 (511)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCSSSCCBCH
T ss_pred CHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeecccccCCcCH
Confidence 3568999999999999999999999999999999999999999999999865 22110 1223444332
Q ss_pred -----------C--CCCCCCCHHHHHHHHhhhc-CCC------chhHHHHHHHHHHH-cCCCCC--Cccc---ccCCCCC
Q 007178 379 -----------D--LLWETLTGREHLLFYGRLK-NLK------GPALTQAVEESLKS-VNLFHG--GVAD---KQAGKYS 432 (614)
Q Consensus 379 -----------~--~l~~~lTv~e~l~~~~~~~-~~~------~~~~~~~~~~~l~~-~~L~~~--~~~~---~~~~~LS 432 (614)
| .++..++..|++.+..... |.. .....+.++.+... .++... ...+ .....+|
T Consensus 323 ~~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s 402 (511)
T 2oap_1 323 YDLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVR 402 (511)
T ss_dssp HHHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEES
T ss_pred HHHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEe
Confidence 2 2334677777766554433 311 11222222222211 222210 0112 2345689
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEE--EcCCHHHHHhhCC
Q 007178 433 GGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIIL--TTHSMEEAEALCD 497 (614)
Q Consensus 433 gG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil--~TH~~~e~~~l~d 497 (614)
+|||||.++|. + | |+||||..++.+++.+.+.. +|+|+++ +||++++++..|+
T Consensus 403 ~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 403 GNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp SSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred CCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 99999877652 1 7 99999999988888887764 5889885 9999999998884
No 132
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.55 E-value=1e-16 Score=166.37 Aligned_cols=122 Identities=12% Similarity=0.051 Sum_probs=91.0
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEE---cCeeCCCcHHHhh-cceEEEcCCCCCC-----CCCCHHH
Q 007178 319 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV---QGLDIRTDMDRIY-TSMGVCPQEDLLW-----ETLTGRE 389 (614)
Q Consensus 319 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i---~G~~i~~~~~~~~-~~ig~~~Q~~~l~-----~~lTv~e 389 (614)
++.+|++++|+||||||||||+|+|+ +.+|++|+|.+ +|+++.......+ +.+||++|.+.+. +.+|+ |
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 45679999999999999999999999 99999999999 9988765433333 3689999998653 67899 8
Q ss_pred HH--HHH------hhhcC-CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 007178 390 HL--LFY------GRLKN-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 443 (614)
Q Consensus 390 ~l--~~~------~~~~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~ 443 (614)
|+ .|. +++++ ...++...+++++++.++|.+ ...+++++.|||.++|++.|||
T Consensus 239 ~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~-~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 239 EVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISC-ERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCH-HHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCH-HHHHHHHHHHHHHHHHHHHHhc
Confidence 87 343 22443 233444567999999999962 3678899999999999999986
No 133
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.52 E-value=4e-14 Score=150.95 Aligned_cols=77 Identities=29% Similarity=0.406 Sum_probs=69.8
Q ss_pred ccCCCCChhHHHHH------HHHHHHhCC-CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCE
Q 007178 426 KQAGKYSGGMKRRL------SVAISLIGN-PKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDR 498 (614)
Q Consensus 426 ~~~~~LSgG~kqrl------~ia~al~~~-p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dr 498 (614)
+++.+||||||||+ ++|+|++++ |+++||||||+|||+..++.+++.|++..++.+||++||+++ +..+||+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~ 354 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADV 354 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCE
Confidence 56789999999988 567899999 999999999999999999999999998766679999999986 5789999
Q ss_pred EEEEe
Q 007178 499 LGIFV 503 (614)
Q Consensus 499 i~il~ 503 (614)
+++|+
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
No 134
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.51 E-value=1.7e-17 Score=177.64 Aligned_cols=168 Identities=11% Similarity=0.109 Sum_probs=127.3
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhC------------CCCCCccEEEEcCeeCCCcHH--Hhhcce---EEEcCCCCC
Q 007178 319 ALPSGECFGMLGPNGAGKTTFISMMIG------------ITRTTSGTAYVQGLDIRTDMD--RIYTSM---GVCPQEDLL 381 (614)
Q Consensus 319 ~i~~Gei~~LlG~NGaGKTTll~~l~G------------l~~p~sG~i~i~G~~i~~~~~--~~~~~i---g~~~Q~~~l 381 (614)
.+++|+.+||+|+||||||||+|+|+| ...|++|.+.+.|..+..... .-++.+ .++++.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 567899999999999999999999999 667999999998854321111 112223 478888999
Q ss_pred CCCCCHHHHH--HHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCC--CEEEEeCC
Q 007178 382 WETLTGREHL--LFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP--KVVYMDEP 457 (614)
Q Consensus 382 ~~~lTv~e~l--~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p--~vllLDEP 457 (614)
++..+..|++ .+...++.. +.++..++.. .+..+..+||+. +| ++.++|||
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~---------d~il~Vvd~~----~d~~i~~v~~~~------------dP~~di~ildee 150 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAV---------DAIYQVVRAF----DDAEIIHVEGDV------------DPIRDLSIIVDE 150 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTC---------SEEEEEEECC----CTTCSSCCSSSS------------CHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHH---------HHHHHHHhcc----ccceeeeecccc------------Ccchhhhhchhh
Confidence 8888877766 555544432 1233333432 245566677764 99 99999999
Q ss_pred CCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHhhCCEEE-EEeCC-EEEEEcCH
Q 007178 458 STGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLG-IFVDG-SLQCIGNP 513 (614)
Q Consensus 458 tsgLD~~~~~~i~~~l~~~-~-~g~tIil~TH~~~e~~~l~dri~-il~~G-~l~~~g~~ 513 (614)
+.++|+..+++.|+.+++. . .|.||+ +|++++++++||++. +|++| +++..|+.
T Consensus 151 l~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 151 LLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 9999999999999999886 5 477764 999999999999998 99999 88766653
No 135
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.49 E-value=4.6e-15 Score=141.45 Aligned_cols=111 Identities=14% Similarity=0.177 Sum_probs=77.1
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhh
Q 007178 318 LALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRL 397 (614)
Q Consensus 318 l~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~ 397 (614)
+++++|+.++|.||||+|||||+++|+|.+.|++|... .| +++.+.+...
T Consensus 33 ~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~-----------------~~----------~~~~~~~~~~--- 82 (180)
T 3ec2_A 33 FNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG-----------------YF----------FDTKDLIFRL--- 82 (180)
T ss_dssp CCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC-----------------CE----------EEHHHHHHHH---
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE-----------------EE----------EEHHHHHHHH---
Confidence 55678999999999999999999999999877666310 11 2333332211
Q ss_pred cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCC-CCCHHHHHHHHHHHHHh
Q 007178 398 KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPST-GLDPASRNNLWNVVKRA 476 (614)
Q Consensus 398 ~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPts-gLD~~~~~~i~~~l~~~ 476 (614)
......-.. . -....+.+|++|+||||++ ++|+..++.+.+++.+.
T Consensus 83 ------------~~~~~~~~~------~---------------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~ 129 (180)
T 3ec2_A 83 ------------KHLMDEGKD------T---------------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYR 129 (180)
T ss_dssp ------------HHHHHHTCC------S---------------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHH
T ss_pred ------------HHHhcCchH------H---------------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHH
Confidence 111111000 0 0112234899999999985 99999999999999875
Q ss_pred -cCCceEEEEcCCHHH
Q 007178 477 -KQGRAIILTTHSMEE 491 (614)
Q Consensus 477 -~~g~tIil~TH~~~e 491 (614)
.+|+++|++||...+
T Consensus 130 ~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 130 YNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHTTCEEEEECCCCSC
T ss_pred HHcCCCEEEEcCCChh
Confidence 579999999998754
No 136
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.48 E-value=3.2e-14 Score=149.74 Aligned_cols=136 Identities=18% Similarity=0.176 Sum_probs=80.2
Q ss_pred EEEECCCCCcHHHHHHHHhC-CCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc-h
Q 007178 326 FGMLGPNGAGKTTFISMMIG-ITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG-P 403 (614)
Q Consensus 326 ~~LlG~NGaGKTTll~~l~G-l~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~-~ 403 (614)
+.|.||||+||||++++|+| +..|++|++.++|.+...... .+..+++++|.+.+.-..+ + .+... .
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~--------~~~~~~~ 107 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN-RKLELNVVSSPYHLEITPS--D--------MGNNDRI 107 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC-------------------CCEECSSEEEECCC--------------CCHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc-ccceeeeecccceEEecHh--h--------cCCcchH
Confidence 89999999999999999999 899999999999987653322 2567899998765421111 0 01111 1
Q ss_pred hHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEE
Q 007178 404 ALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAII 483 (614)
Q Consensus 404 ~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIi 483 (614)
..++.++++.+..++. ... +||| +.++|+++|+|||++ ||+.++..+.+.+.+..++.++|
T Consensus 108 ~~~~~i~~~~~~~~~~------~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~I 168 (354)
T 1sxj_E 108 VIQELLKEVAQMEQVD------FQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLI 168 (354)
T ss_dssp HHHHHHHHHTTTTC------------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEE
T ss_pred HHHHHHHHHHHhcccc------ccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEE
Confidence 2233333333333332 111 5676 788999999999999 99999999999999877789999
Q ss_pred EEcCCHHH
Q 007178 484 LTTHSMEE 491 (614)
Q Consensus 484 l~TH~~~e 491 (614)
++||+++.
T Consensus 169 l~t~~~~~ 176 (354)
T 1sxj_E 169 MVCDSMSP 176 (354)
T ss_dssp EEESCSCS
T ss_pred EEeCCHHH
Confidence 99999764
No 137
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.47 E-value=2.5e-17 Score=173.28 Aligned_cols=175 Identities=20% Similarity=0.221 Sum_probs=122.4
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCC-------cEEEEECCCCCcHHHHHHHHhCCC----CCCccEEEEcCee
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSG-------ECFGMLGPNGAGKTTFISMMIGIT----RTTSGTAYVQGLD 360 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~G-------ei~~LlG~NGaGKTTll~~l~Gl~----~p~sG~i~i~G~~ 360 (614)
++.+++++.|++ ..+++++++.+++| +.++|.||||+|||||+++|+|.+ .|++|.+..++.+
T Consensus 19 lr~~~l~~~~g~------~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~ 92 (334)
T 1in4_A 19 LRPKSLDEFIGQ------ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGD 92 (334)
T ss_dssp TSCSSGGGCCSC------HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHH
T ss_pred cCCccHHHccCc------HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHH
Confidence 334566667763 56899999999876 899999999999999999999988 7888888777665
Q ss_pred CCCcHHHh-hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCC----chhHHHHHHHHHHHcCCCCCCcccccCCCCChhH
Q 007178 361 IRTDMDRI-YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK----GPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM 435 (614)
Q Consensus 361 i~~~~~~~-~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~----~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~ 435 (614)
+....... +..|++++|.+.+.+ ++.|++.......+.. .....+.++..++.+++. .++.++..||+|+
T Consensus 93 l~~~~~~~~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li---~at~~~~~Ls~~l 167 (334)
T 1in4_A 93 MAAILTSLERGDVLFIDEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV---GATTRSGLLSSPL 167 (334)
T ss_dssp HHHHHHHCCTTCEEEEETGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEE---EEESCGGGSCHHH
T ss_pred HHHHHHHccCCCEEEEcchhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEE---EecCCcccCCHHH
Confidence 53222222 457999999888765 7888885433222211 122234455566666664 2677888999999
Q ss_pred HHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHhhCCE
Q 007178 436 KRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDR 498 (614)
Q Consensus 436 kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~--~g~tIil~TH~~~e~~~l~dr 498 (614)
|||+.++ .+|||.+++++.+++++.. .+ ++|+.+.++.+|++
T Consensus 168 ~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 168 RSRFGII----------------LELDFYTVKELKEIIKRAASLMD-----VEIEDAAAEMIAKR 211 (334)
T ss_dssp HTTCSEE----------------EECCCCCHHHHHHHHHHHHHHTT-----CCBCHHHHHHHHHT
T ss_pred HHhcCce----------------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHHHHHHHHHh
Confidence 9998654 7888889999999998753 24 37899988888876
No 138
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.46 E-value=7.4e-17 Score=174.31 Aligned_cols=147 Identities=14% Similarity=0.100 Sum_probs=105.7
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcH-----H
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM-----D 366 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~-----~ 366 (614)
+.++++++.|+ ...+|+++ +. ++|++++|+||||||||||+++|+|+++|++|+|.+.|.++.... .
T Consensus 144 ~~l~~Lg~~~~------~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~ 215 (418)
T 1p9r_A 144 LDLHSLGMTAH------NHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQT 215 (418)
T ss_dssp CCGGGSCCCHH------HHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEE
T ss_pred CCHHHcCCCHH------HHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceE
Confidence 45566766664 35688888 54 899999999999999999999999999999999999998774221 1
Q ss_pred HhhcceEEEc---------CCCCC--CCC----CCHHHHHHHHhhhc----CCCchhHHHHHHHHHHHcCCCCCCccccc
Q 007178 367 RIYTSMGVCP---------QEDLL--WET----LTGREHLLFYGRLK----NLKGPALTQAVEESLKSVNLFHGGVADKQ 427 (614)
Q Consensus 367 ~~~~~ig~~~---------Q~~~l--~~~----lTv~e~l~~~~~~~----~~~~~~~~~~~~~~l~~~~L~~~~~~~~~ 427 (614)
.+++.+|+.+ |++.+ +.. .|+++++.+...-+ ........+.+ +.++.+++.+ . ..
T Consensus 216 ~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i-~rL~~lgl~~--~--~~ 290 (418)
T 1p9r_A 216 QVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAV-TRLRDMGIEP--F--LI 290 (418)
T ss_dssp ECBGGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHH-HHHHHHTCCH--H--HH
T ss_pred EEccccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHH-HHHHHcCCcH--H--HH
Confidence 2334566655 88765 343 68999988653211 01111222333 3567788852 2 37
Q ss_pred CCCCChhHHHHHHHHHHHhCCCCEEE
Q 007178 428 AGKYSGGMKRRLSVAISLIGNPKVVY 453 (614)
Q Consensus 428 ~~~LSgG~kqrl~ia~al~~~p~vll 453 (614)
+.+|||||+|| ||++++.+|++..
T Consensus 291 ~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 291 SSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred HHHHHHHHHHH--hhhhhcCCCCccC
Confidence 88999999999 9999999999876
No 139
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.46 E-value=1.8e-14 Score=133.94 Aligned_cols=92 Identities=16% Similarity=0.335 Sum_probs=71.8
Q ss_pred ceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcc--EEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHH
Q 007178 311 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG--TAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 388 (614)
Q Consensus 311 ~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG--~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~ 388 (614)
.+++++ +|+.++|+||||+|||||+++|+|...+ +| .+++++.++...
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------ 78 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------ 78 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC------------------------
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH------------------------
Confidence 355555 8999999999999999999999999887 57 555555432211
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHH
Q 007178 389 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNN 468 (614)
Q Consensus 389 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~ 468 (614)
+++.+|++|++|||++ +|+..++.
T Consensus 79 -------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~ 102 (149)
T 2kjq_A 79 -------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQAL 102 (149)
T ss_dssp -------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHHHH
T ss_pred -------------------------------------------------------HHHhCCCEEEEeCccc-cChHHHHH
Confidence 2356799999999998 66666899
Q ss_pred HHHHHHHh-cCCce-EEEEcCC
Q 007178 469 LWNVVKRA-KQGRA-IILTTHS 488 (614)
Q Consensus 469 i~~~l~~~-~~g~t-Iil~TH~ 488 (614)
+++++.+. .+|++ +|++||.
T Consensus 103 l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 103 LFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHHHHHHHHcCCcEEEEECCC
Confidence 99999875 45788 8899984
No 140
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.42 E-value=6.4e-16 Score=147.12 Aligned_cols=136 Identities=16% Similarity=0.150 Sum_probs=84.7
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEEcCeeCCC-c---HHHhh-cceE----EEcCCCCCCCCCCHHHHH
Q 007178 324 ECFGMLGPNGAGKTTFISMMIGITRTT---SGTAYVQGLDIRT-D---MDRIY-TSMG----VCPQEDLLWETLTGREHL 391 (614)
Q Consensus 324 ei~~LlG~NGaGKTTll~~l~Gl~~p~---sG~i~i~G~~i~~-~---~~~~~-~~ig----~~~Q~~~l~~~lTv~e~l 391 (614)
++++|+|+||||||||+++|+|+++|+ .|+|.++|.++.. + .+..| +.+| +++|++.+| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 689999999999999999999999998 8999999988543 1 34455 4677 889987665 110
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHH-c-CCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEE-------EEeCCCCC--
Q 007178 392 LFYGRLKNLKGPALTQAVEESLKS-V-NLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVV-------YMDEPSTG-- 460 (614)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~l~~-~-~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vl-------lLDEPtsg-- 460 (614)
+ ..+....++++++. + ++. ..-...||||||||++||||++++|++. .=|.|..+
T Consensus 77 -------~--~~~~~a~l~~~i~~~l~g~d-----t~i~EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~ 142 (171)
T 2f1r_A 77 -------V--SEEEGNDLDWIYERYLSDYD-----LVITEGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHK 142 (171)
T ss_dssp -------C--CHHHHTCHHHHHHHHTTTCS-----EEEEESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSC
T ss_pred -------C--ChhhhhCHHHHHHhhCCCCC-----EEEECCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCc
Confidence 0 01111134455554 3 332 1222349999999999999999999873 22444322
Q ss_pred -CCHHHHHHHHHHHHH-hcCC
Q 007178 461 -LDPASRNNLWNVVKR-AKQG 479 (614)
Q Consensus 461 -LD~~~~~~i~~~l~~-~~~g 479 (614)
+|....+.+.+.|.+ .++|
T Consensus 143 ~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 143 WFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp EECTTCHHHHHHHHHHHHTC-
T ss_pred ccCcccHHHHHHHHHHHHhcc
Confidence 233445667777654 4554
No 141
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.41 E-value=3.7e-15 Score=154.51 Aligned_cols=111 Identities=11% Similarity=0.095 Sum_probs=78.2
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEE---cCeeCCCcHHHhh-cceEEEcCCCC-------------
Q 007178 318 LALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV---QGLDIRTDMDRIY-TSMGVCPQEDL------------- 380 (614)
Q Consensus 318 l~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i---~G~~i~~~~~~~~-~~ig~~~Q~~~------------- 380 (614)
|++.+|++++|+||||||||||+|+|+|+.+|++|+|.+ +|+++.......+ +.+|+++|.+.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456689999999999999999999999999999999999 8988764332222 36899999975
Q ss_pred ---CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCCh
Q 007178 381 ---LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSG 433 (614)
Q Consensus 381 ---l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSg 433 (614)
+++++|+ ||+.|.... ...+...++.++++.++|.. +..++++++||+
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~---~~~e~~~~v~~~l~~~~L~~-~~~~~~~~~lse 294 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCN---HVDEPECGVKEAVENGEIAE-SRYENYVKMFYE 294 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCC---SSSCSSCHHHHHHHHTSSCH-HHHHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCc---CCCCCCcHHHHHHHcCCCCH-HHHHHHHHHHHH
Confidence 5888999 998875321 12334567899999999952 467888888885
No 142
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.41 E-value=1.1e-15 Score=159.05 Aligned_cols=140 Identities=11% Similarity=0.087 Sum_probs=104.0
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeeEEE-------------------eCCcEEEEECCCCCcHHHHHHHHhCCCC--
Q 007178 290 HAIISDNLRKIYPGRDGNPEKVAVNGLSLAL-------------------PSGECFGMLGPNGAGKTTFISMMIGITR-- 348 (614)
Q Consensus 290 ~~i~~~~l~k~y~~~~~~~~~~~l~~isl~i-------------------~~Gei~~LlG~NGaGKTTll~~l~Gl~~-- 348 (614)
.+|+++||+|.|+ .+++++++.+ .+|+++||+||||||||||+++|+|++.
T Consensus 36 ~~i~~~~v~~~y~--------~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~ 107 (308)
T 1sq5_A 36 EDLSLEEVAEIYL--------PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRW 107 (308)
T ss_dssp TTCCHHHHHHTHH--------HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTS
T ss_pred cccchHhHHHHHH--------HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhC
Confidence 3588999999993 5899999988 9999999999999999999999999988
Q ss_pred CCccEEEE---cCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCccc
Q 007178 349 TTSGTAYV---QGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVAD 425 (614)
Q Consensus 349 p~sG~i~i---~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~ 425 (614)
|++|+|.+ +|.... ...++.+|++ |...+++.+|+.+++.+...++.... .+ .
T Consensus 108 ~~~G~i~vi~~d~~~~~---~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~--------------~i------~ 163 (308)
T 1sq5_A 108 PEHRRVELITTDGFLHP---NQVLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVP--------------NV------T 163 (308)
T ss_dssp TTCCCEEEEEGGGGBCC---HHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCS--------------CE------E
T ss_pred CCCCeEEEEecCCccCc---HHHHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCC--------------ce------e
Confidence 99999999 887642 1234568888 88888888999999998766643110 01 1
Q ss_pred ccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCH
Q 007178 426 KQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDP 463 (614)
Q Consensus 426 ~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~ 463 (614)
.+....+.+ +|+..+.+.+.+|+++|+|.|....|+
T Consensus 164 ~P~~~~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 164 APVYSHLIY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp ECCEETTTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred ccccccccc--CcccccceecCCCCEEEECchhhCCCc
Confidence 111111111 233222345678999999999998874
No 143
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.38 E-value=1.2e-14 Score=149.73 Aligned_cols=126 Identities=17% Similarity=0.105 Sum_probs=90.7
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHh-----
Q 007178 321 PSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYG----- 395 (614)
Q Consensus 321 ~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~----- 395 (614)
.++.++||.|++|||||||.+.|.+++.+. | . . ++.+.+++|++.+++. +.++|+.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~-------~-~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G-------G-EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G-------G-GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C-------C-CceEEEeccccccCCh-HHHHHHhccccccch
Confidence 368899999999999999999999999763 2 0 0 3445566999988875 8889988752
Q ss_pred -hhcCCCchhHHHHHHHHHHHcCCC------CCCcccccCCCCChhHHHHHHHH--HHHhCCCCEEEEeCCCCCCCHH
Q 007178 396 -RLKNLKGPALTQAVEESLKSVNLF------HGGVADKQAGKYSGGMKRRLSVA--ISLIGNPKVVYMDEPSTGLDPA 464 (614)
Q Consensus 396 -~~~~~~~~~~~~~~~~~l~~~~L~------~~~~~~~~~~~LSgG~kqrl~ia--~al~~~p~vllLDEPtsgLD~~ 464 (614)
..+|.+.....+.+.+.++.+.-. ..........++||||+||+++| +++ +|+|+|+|||++|+|+.
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPI 168 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCC
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCcc
Confidence 112333322344556666666432 10123445578999999999987 555 99999999999999985
No 144
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.38 E-value=9.4e-14 Score=149.20 Aligned_cols=147 Identities=14% Similarity=0.162 Sum_probs=90.0
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHH--HHhCCCCCCcc-----EEEEcCeeCCCc--HHHhhcceEEEcCCCCCCCCCCHH
Q 007178 318 LALPSGECFGMLGPNGAGKTTFIS--MMIGITRTTSG-----TAYVQGLDIRTD--MDRIYTSMGVCPQEDLLWETLTGR 388 (614)
Q Consensus 318 l~i~~Gei~~LlG~NGaGKTTll~--~l~Gl~~p~sG-----~i~i~G~~i~~~--~~~~~~~ig~~~Q~~~l~~~lTv~ 388 (614)
=.+++|++++|+||||||||||++ ++.++.+++.| .+++++++.... ...+.+++|+.+| ++.
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~--------~vl 244 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD--------DAL 244 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH--------HHH
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH--------hHh
Confidence 378999999999999999999999 45677777555 888888763211 1122334444333 233
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCCh-hHHHHHHHHHHH--hCCCCEEEEeCCCCCCCHHH
Q 007178 389 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSG-GMKRRLSVAISL--IGNPKVVYMDEPSTGLDPAS 465 (614)
Q Consensus 389 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSg-G~kqrl~ia~al--~~~p~vllLDEPtsgLD~~~ 465 (614)
||+.+.. ..++ .+.+.+.-+..+ ..+|+++++|||++.+|+..
T Consensus 245 eni~~~~----------------------------------~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~ 290 (400)
T 3lda_A 245 NNVAYAR----------------------------------AYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDF 290 (400)
T ss_dssp HTEEEEE----------------------------------CCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC---
T ss_pred hcEEEec----------------------------------cCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhh
Confidence 3322110 0111 111222222222 25799999999999999753
Q ss_pred H------------HHHHHHHHHh-c-CCceEEEEcCCHH-------------------HHHhhCCEEEEEeCCE
Q 007178 466 R------------NNLWNVVKRA-K-QGRAIILTTHSME-------------------EAEALCDRLGIFVDGS 506 (614)
Q Consensus 466 ~------------~~i~~~l~~~-~-~g~tIil~TH~~~-------------------e~~~l~dri~il~~G~ 506 (614)
. .++.+.|+++ + .|.|||+++|... .++..+|.++.|+.|+
T Consensus 291 sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 291 SGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 2 4566667665 3 3999999999832 2356688888887763
No 145
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.37 E-value=3.5e-14 Score=153.23 Aligned_cols=166 Identities=17% Similarity=0.142 Sum_probs=100.6
Q ss_pred eeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHH
Q 007178 313 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLL 392 (614)
Q Consensus 313 l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~ 392 (614)
-++++|+++.|+.++|+|+||||||||+++|+|..+ .+.+++..+ ....+|++++++. ..+++.|+.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftT----l~p~~G~V~~~~~--~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTT----LSPNLGVVEVSEE--ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCS----SCCEEEEEECSSS--CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCcccce----ecceeeEEEecCc--ceEEEEeccc
Confidence 479999999999999999999999999999999843 334443322 1223555555430 0011111100
Q ss_pred H---HhhhcCCCchhH--HHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHH
Q 007178 393 F---YGRLKNLKGPAL--TQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRN 467 (614)
Q Consensus 393 ~---~~~~~~~~~~~~--~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~ 467 (614)
+ .....++..... .++++.++..+++. +.++.+||+|++|++++|++|+..|.++++ +++|+..++
T Consensus 215 li~~a~~~~~L~~~fl~~~era~~lL~vvDls-----~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~ 285 (416)
T 1udx_A 215 IIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-----DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEE 285 (416)
T ss_dssp CCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-----SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHH
T ss_pred cccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-----cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHH
Confidence 0 000111111100 01122233334441 566788999999999999999999999999 999998774
Q ss_pred HHHHHHHHhc-CCceEEE-EcCCHHHHHhhCCEE
Q 007178 468 NLWNVVKRAK-QGRAIIL-TTHSMEEAEALCDRL 499 (614)
Q Consensus 468 ~i~~~l~~~~-~g~tIil-~TH~~~e~~~l~dri 499 (614)
.+.++.+.++ .|.+++. ++|.-+.++++++.+
T Consensus 286 ~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 286 AVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 3333333444 4666655 556555566555544
No 146
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.35 E-value=2.1e-14 Score=148.85 Aligned_cols=118 Identities=14% Similarity=0.155 Sum_probs=72.9
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEE---cCeeCCCcHHHhhcceEEEcCCCCCCC----CCCHHHH
Q 007178 318 LALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV---QGLDIRTDMDRIYTSMGVCPQEDLLWE----TLTGREH 390 (614)
Q Consensus 318 l~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i---~G~~i~~~~~~~~~~ig~~~Q~~~l~~----~lTv~e~ 390 (614)
+++.+|++++|+||||||||||+|+|+|+.+|++|+|.+ +|+.+++.....+..+||++|.+.+.+ .+|+ |+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence 567799999999999999999999999999999999999 888775433222233799999988765 6899 88
Q ss_pred HH-HHhhh---------cC-CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHH
Q 007178 391 LL-FYGRL---------KN-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 438 (614)
Q Consensus 391 l~-~~~~~---------~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqr 438 (614)
+. .+..+ ++ ....+...+++++++.++|.+ .+.+...+++.|++||
T Consensus 247 l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~--~r~~~y~~lls~~~~~ 303 (307)
T 1t9h_A 247 LGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQ--YRYDHYVEFMTEIKDR 303 (307)
T ss_dssp HGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCH--HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChH--HHHHHHHHHHHHHhhc
Confidence 83 22211 22 122334467899999999963 4555666777788773
No 147
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.32 E-value=5e-16 Score=158.99 Aligned_cols=145 Identities=14% Similarity=0.137 Sum_probs=107.8
Q ss_pred cceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc-HHHhhcceEEEcCCC-CCCCCCCH
Q 007178 310 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDRIYTSMGVCPQED-LLWETLTG 387 (614)
Q Consensus 310 ~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~-~~~~~~~ig~~~Q~~-~l~~~lTv 387 (614)
..+++++++.+++| ++|.||||+|||||+|+|+|...+ |.+.++|.++... .....+.+++++|.. ...|.+++
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~ 108 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIF 108 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEe
Confidence 46899999999999 999999999999999999999877 7999999887542 233445688888874 45566677
Q ss_pred HHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCC--------
Q 007178 388 REHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPST-------- 459 (614)
Q Consensus 388 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPts-------- 459 (614)
.|++...+..++. ... + .+. ...++...+|||||+||+.+++|+..+|++| |||+.
T Consensus 109 ~Deid~~~~~r~~------~~~----~--~~~--~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~ 172 (274)
T 2x8a_A 109 FDEVDALCPRRSD------RET----G--ASV--RVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKT 172 (274)
T ss_dssp EETCTTTCC---------------------CT--THHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEE
T ss_pred eehhhhhhcccCC------Ccc----h--HHH--HHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeE
Confidence 7777653321110 000 0 121 3567788899999999999999999999975 99863
Q ss_pred ----CCCHHHHHHHHHHHH
Q 007178 460 ----GLDPASRNNLWNVVK 474 (614)
Q Consensus 460 ----gLD~~~~~~i~~~l~ 474 (614)
--|...|+++++.+.
T Consensus 173 i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 173 LFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EECCSCCHHHHHHHHHHHT
T ss_pred EEeCCcCHHHHHHHHHHHH
Confidence 347888888887654
No 148
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.30 E-value=3.3e-16 Score=152.42 Aligned_cols=153 Identities=17% Similarity=0.217 Sum_probs=88.6
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCC-------------CCccEEEEcCeeCCC-cHHHhhcceEEEcCCCCCCCCCC
Q 007178 321 PSGECFGMLGPNGAGKTTFISMMIGITR-------------TTSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLT 386 (614)
Q Consensus 321 ~~Gei~~LlG~NGaGKTTll~~l~Gl~~-------------p~sG~i~i~G~~i~~-~~~~~~~~ig~~~Q~~~l~~~lT 386 (614)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.++.. .....++.+ +|+..++. .+
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~-~~ 75 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEH-AE 75 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEE-EE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEee-ee
Confidence 5799999999999999999999999875 77787 47766532 233333333 45444332 24
Q ss_pred HHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHH----HHHHHH-HHhCCCCEEEEeCCCCCC
Q 007178 387 GREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKR----RLSVAI-SLIGNPKVVYMDEPSTGL 461 (614)
Q Consensus 387 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kq----rl~ia~-al~~~p~vllLDEPtsgL 461 (614)
+.+|+ +|.+. +.++++++.-... ..+.. + .|-++ ++ .|+ +++.+|++++|||||+++
T Consensus 76 ~~~n~------~g~~~----~~i~~~~~~~~~~---~~~~~---~-~g~~~~~~~~~-~~~~~~l~~p~~~ilde~~~~~ 137 (198)
T 1lvg_A 76 FSGNL------YGTSK----EAVRAVQAMNRIC---VLDVD---L-QGVRSIKKTDL-CPIYIFVQPPSLDVLEQRLRLR 137 (198)
T ss_dssp ETTEE------EEEEH----HHHHHHHHTTCEE---EEECC---H-HHHHHHTTSSC-CCEEEEEECSCHHHHHHHHHHH
T ss_pred ecCcc------CCCCH----HHHHHHHHcCCcE---EEECC---H-HHHHHHHhcCC-CcEEEEEeCCCHHHHHHHHHhc
Confidence 44443 22222 2344444431110 11110 0 11111 11 345 677778888888889999
Q ss_pred CHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHhhCCEEEEEeC
Q 007178 462 DPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVD 504 (614)
Q Consensus 462 D~~~~~~i~~~l~~~~~g~tIil~TH~~~e~~~l~dri~il~~ 504 (614)
|..+.+.+.+.|.+..++ +..+|. . ..+|+|+++++
T Consensus 138 d~~~e~~i~~~l~~~~~~---~~~a~~--~--~~~D~iivnd~ 173 (198)
T 1lvg_A 138 NTETEESLAKRLAAARTD---MESSKE--P--GLFDLVIINDD 173 (198)
T ss_dssp TCSCHHHHHHHHHHHHHH---TTGGGS--T--TTCSEEEECSS
T ss_pred CCCCHHHHHHHHHHHHHH---HHHhhc--c--CCceEEEECCC
Confidence 999988898888765433 233452 1 46899876653
No 149
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.27 E-value=3.8e-13 Score=130.18 Aligned_cols=126 Identities=12% Similarity=0.056 Sum_probs=81.2
Q ss_pred eEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcH-HHhhcceEEEcCCCCCCCCCCHHHHHHHHh
Q 007178 317 SLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM-DRIYTSMGVCPQEDLLWETLTGREHLLFYG 395 (614)
Q Consensus 317 sl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~-~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~ 395 (614)
|+++.+|++++|+||||||||||+++|+|+++ .+.+.|.++.... ...+..++|+||++.+++.+++.+++....
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHA 76 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeee
Confidence 57788999999999999999999999999963 5888887765422 233567999999988888777777665444
Q ss_pred hhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCC
Q 007178 396 RLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEP 457 (614)
Q Consensus 396 ~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEP 457 (614)
...+.......+.+++.++.-.. -..+ +..+-+.-++....++.+++++.|
T Consensus 77 ~~~~~~~~~~~~~i~~~l~~g~~---vi~d--------~~~~~~~~~~~~~~~~~~v~~~~~ 127 (205)
T 3tr0_A 77 TIYERHYGTEKDWVLRQLKAGRD---VLLE--------IDWQGARQIRELFPPALSIFILPP 127 (205)
T ss_dssp EETTEEEEEEHHHHHHHHHTTCE---EEEE--------CCHHHHHHHHHHCTTCEEEEEECS
T ss_pred eeecccccchHHHHHHHHHcCCe---EEEE--------ECHHHHHHHHHhCCCcEEEEEECc
Confidence 33322111223345555553211 1122 233444455566778888888887
No 150
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.25 E-value=9.9e-12 Score=128.39 Aligned_cols=139 Identities=15% Similarity=0.215 Sum_probs=94.8
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC
Q 007178 321 PSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL 400 (614)
Q Consensus 321 ~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~ 400 (614)
.+|++++++|||||||||+++.|++.+.+++| ++++++.++.. ..++.|++..++..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-----------------~~V~lv~~D~~---r~~a~eqL~~~~~~--- 159 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-----------------KKIAFITTDTY---RIAAVEQLKTYAEL--- 159 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-----------------CCEEEEECCCS---STTHHHHHHHHHTT---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-----------------CEEEEEecCcc---cchHHHHHHHHHHh---
Confidence 47999999999999999999999999998888 13455555542 24566666554332
Q ss_pred CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc---
Q 007178 401 KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--- 477 (614)
Q Consensus 401 ~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~--- 477 (614)
.|+.. ... .+. ..-+.+++ .+.+|+++|+| |+|+|+..+..++++.+-..
T Consensus 160 ---------------~gl~~--~~~-----~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~ 212 (296)
T 2px0_A 160 ---------------LQAPL--EVC-----YTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKETIPFES 212 (296)
T ss_dssp ---------------TTCCC--CBC-----SSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCT
T ss_pred ---------------cCCCe--Eec-----CCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcC
Confidence 33321 111 122 23344444 45999999999 99999988777777655432
Q ss_pred C-CceEEE-EcCCHHHHHhhCCEEEEEeCCEEEE
Q 007178 478 Q-GRAIIL-TTHSMEEAEALCDRLGIFVDGSLQC 509 (614)
Q Consensus 478 ~-g~tIil-~TH~~~e~~~l~dri~il~~G~l~~ 509 (614)
. +..+++ +||..+++.++|+++..+..+.++.
T Consensus 213 ~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 213 SIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp TEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 2 345555 5999999999999876555566554
No 151
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.23 E-value=4.9e-16 Score=154.41 Aligned_cols=178 Identities=11% Similarity=0.081 Sum_probs=73.3
Q ss_pred cceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHh-CCCCCCccEEEEcCeeCCCcH--HHhhcceEEEcCCCCCCCCCC
Q 007178 310 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMI-GITRTTSGTAYVQGLDIRTDM--DRIYTSMGVCPQEDLLWETLT 386 (614)
Q Consensus 310 ~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~-Gl~~p~sG~i~i~G~~i~~~~--~~~~~~ig~~~Q~~~l~~~lT 386 (614)
.+..+++||++++|+++||+|||||||||++++|+ |++++. ..+.+..+.. ......++|.+++...++.++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~-----~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ 88 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNI-----VKSVSVTTRAARKGEKEGKDYYFVDREEFLRLC 88 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----CE-----EECCCEESSCCCTTCCBTTTBEECCHHHHHHHH
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCc-----ccccccCCCCCCccccCCCeEEEecHHHhhhhh
Confidence 45788999999999999999999999999999999 998541 2232221110 011123456666554444444
Q ss_pred HHHHHHHH----hhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHH-HHH-HHHhCCCCEEEEeCCCCC
Q 007178 387 GREHLLFY----GRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRL-SVA-ISLIGNPKVVYMDEPSTG 460 (614)
Q Consensus 387 v~e~l~~~----~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl-~ia-~al~~~p~vllLDEPtsg 460 (614)
+.+++... ...++...+ .+++.++.-.. -..+-.+.. ....+++. .-+ ..++..|+..++||+..+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~----~i~~~~~~~~~---vild~~~~g-~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~ 160 (231)
T 3lnc_A 89 SNGEIIEHAEVFGNFYGVPRK----NLEDNVDKGVS---TLLVIDWQG-AFKFMEMMREHVVSIFIMPPSMEELRRRLCG 160 (231)
T ss_dssp HTTCEEEEEEETTEEEEEECT----THHHHHHHTCE---EEEECCHHH-HHHHHHHSGGGEEEEEEECSCHHHHHHC---
T ss_pred hcCceehhhhhccccCCCCHH----HHHHHHHcCCe---EEEEcCHHH-HHHHHHhcCCCeEEEEEECCcHHHHHHHHHH
Confidence 33333211 112222222 23344443211 011111000 01113332 111 223456666777888999
Q ss_pred CCHHHHHHHHHHHHHh----c--CCceEEEEcCCHHHHHhhCCEEE
Q 007178 461 LDPASRNNLWNVVKRA----K--QGRAIILTTHSMEEAEALCDRLG 500 (614)
Q Consensus 461 LD~~~~~~i~~~l~~~----~--~g~tIil~TH~~~e~~~l~dri~ 500 (614)
.|..+...+.+.+++. . +...+++++|+++++.+-.++++
T Consensus 161 R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i 206 (231)
T 3lnc_A 161 RRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNIL 206 (231)
T ss_dssp -----------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHH
Confidence 8888777777666542 1 24567777888887766655544
No 152
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.23 E-value=1e-12 Score=130.63 Aligned_cols=173 Identities=16% Similarity=0.088 Sum_probs=94.4
Q ss_pred cceeeee-eEEEeCCcEEEEECCCCCcHHHHH-HHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCH
Q 007178 310 KVAVNGL-SLALPSGECFGMLGPNGAGKTTFI-SMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTG 387 (614)
Q Consensus 310 ~~~l~~i-sl~i~~Gei~~LlG~NGaGKTTll-~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv 387 (614)
...||++ .-.+++|++++|.||||||||||+ +++.+..+...+.+++.+........+..+.+|+.+|+....+.+++
T Consensus 9 ~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~ 88 (247)
T 2dr3_A 9 IPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQNMAQFGWDVKPYEEKGMFAM 88 (247)
T ss_dssp CTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHHHHHHHTTTCCCHHHHHHTSEEE
T ss_pred chhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCcEEE
Confidence 3466766 668999999999999999999995 55555555555566666543222222222345554442110011111
Q ss_pred HHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHh--CCCCEEEEeCCCCCC--CH
Q 007178 388 REHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI--GNPKVVYMDEPSTGL--DP 463 (614)
Q Consensus 388 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~--~~p~vllLDEPtsgL--D~ 463 (614)
.+. ... .+.. +...++ +.... +....+....++.++ .+|+++++|||++.+ |+
T Consensus 89 ~~~----------~~~----~~~~-~~~~~~----~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~ 145 (247)
T 2dr3_A 89 VDA----------FTA----GIGK-SKEYEK----YIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKP 145 (247)
T ss_dssp EEC----------STT----TTCC---CCCS----CBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCG
T ss_pred Eec----------chh----hccc-cccccc----ccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCH
Confidence 110 000 0000 000011 11111 112222223333333 579999999999988 66
Q ss_pred HHHHHHHHHHHH-h-cCCceEEEEcCCHHH--------HHhhCCEEEEEeCC
Q 007178 464 ASRNNLWNVVKR-A-KQGRAIILTTHSMEE--------AEALCDRLGIFVDG 505 (614)
Q Consensus 464 ~~~~~i~~~l~~-~-~~g~tIil~TH~~~e--------~~~l~dri~il~~G 505 (614)
..+++....+.+ + +.|.||++++|...+ ++..||.++.|+..
T Consensus 146 ~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~~ 197 (247)
T 2dr3_A 146 AMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDLD 197 (247)
T ss_dssp GGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEEE
Confidence 444555454544 4 358999999999876 56789999998753
No 153
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.22 E-value=3.5e-14 Score=138.82 Aligned_cols=156 Identities=15% Similarity=0.211 Sum_probs=89.2
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhh
Q 007178 320 LPSGECFGMLGPNGAGKTTFISMMIGITRTT---SGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGR 396 (614)
Q Consensus 320 i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~---sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~ 396 (614)
.++|+++||+||||||||||+++|+|+++|+ .|.|.++|..+.... +..++..+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~---~~~~~~~~~------------------- 76 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRL---LEPRGLLPR------------------- 76 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHH---HGGGTCGGG-------------------
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHH---HHHhccccc-------------------
Confidence 4789999999999999999999999999864 556655555442111 011111110
Q ss_pred hcCCCchhHHHHHHHHHHHcC----CCCCCcccccCCCCChhHHHHHHHH-HHHhCCCCEEEEeCCCCCCCHHHHHHHHH
Q 007178 397 LKNLKGPALTQAVEESLKSVN----LFHGGVADKQAGKYSGGMKRRLSVA-ISLIGNPKVVYMDEPSTGLDPASRNNLWN 471 (614)
Q Consensus 397 ~~~~~~~~~~~~~~~~l~~~~----L~~~~~~~~~~~~LSgG~kqrl~ia-~al~~~p~vllLDEPtsgLD~~~~~~i~~ 471 (614)
++...........+.++.+. +.- ...+ ....+|+||+||+++| ++++.++.++++|||. |.
T Consensus 77 -~~~~~~~~~~~~~~~l~~l~~~~~i~~-p~~d-~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~-----------~~ 142 (208)
T 3c8u_A 77 -KGAPETFDFEGFQRLCHALKHQERVIY-PLFD-RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG-----------WR 142 (208)
T ss_dssp -TTSGGGBCHHHHHHHHHHHHHCSCEEE-EEEE-TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT-----------GG
T ss_pred -CCCCchhhHHHHHHHHHHHhcCCceec-ccCC-ccccCCCCCceEEcCCCcEEEECCceeccCCch-----------hH
Confidence 01110000111122222211 110 1122 3345799999999887 7777777777777773 22
Q ss_pred HHHHhcCCceEEEEcCCHHH-HHhhCCEEEEEeCCEEEEEcCHHHHHHhc
Q 007178 472 VVKRAKQGRAIILTTHSMEE-AEALCDRLGIFVDGSLQCIGNPKELKARY 520 (614)
Q Consensus 472 ~l~~~~~g~tIil~TH~~~e-~~~l~dri~il~~G~l~~~g~~~~l~~~~ 520 (614)
.+.. .--.++.++++.+. ..+++.|. +..|+ +.+++.+++
T Consensus 143 ~l~~--~~d~~i~vd~~~~~~~~R~~~R~--~~~g~-----t~~~~~~~~ 183 (208)
T 3c8u_A 143 DLTA--IWDVSIRLEVPMADLEARLVQRW--LDHGL-----NHDAAVARA 183 (208)
T ss_dssp GGGG--TCSEEEEECCCHHHHHHHHHHHH--HHTTC-----CHHHHHHHH
T ss_pred HHHH--hcCEEEEEeCCHHHHHHHHHHHH--HhcCC-----CHHHHHHHH
Confidence 2222 12367888888876 56667662 34454 677777665
No 154
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.20 E-value=5.5e-11 Score=122.74 Aligned_cols=138 Identities=15% Similarity=0.140 Sum_probs=97.8
Q ss_pred EEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceE
Q 007178 294 SDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMG 373 (614)
Q Consensus 294 ~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig 373 (614)
.+++++.|++ .. ++++++ +|++++++|+||+||||+.+.|+|.+++..|+|.+.+.|+......
T Consensus 79 ~~~l~~~~~~------~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~------ 142 (295)
T 1ls1_A 79 YEALKEALGG------EA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR------ 142 (295)
T ss_dssp HHHHHHHTTS------SC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHH------
T ss_pred HHHHHHHHCC------CC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHH------
Confidence 3566677753 11 678888 8999999999999999999999999999999999998887532110
Q ss_pred EEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEE
Q 007178 374 VCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVY 453 (614)
Q Consensus 374 ~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vll 453 (614)
+.+. .+.+..++. ..... ...+-.+.+|.+++.+...+++++|
T Consensus 143 ---------------~ql~------------------~~~~~~~l~---~~~~~-~~~~p~~l~~~~l~~~~~~~~D~vi 185 (295)
T 1ls1_A 143 ---------------EQLR------------------LLGEKVGVP---VLEVM-DGESPESIRRRVEEKARLEARDLIL 185 (295)
T ss_dssp ---------------HHHH------------------HHHHHHTCC---EEECC-TTCCHHHHHHHHHHHHHHHTCCEEE
T ss_pred ---------------HHHH------------------HhcccCCeE---EEEcC-CCCCHHHHHHHHHHHHHhCCCCEEE
Confidence 0110 112334553 11100 0123345578899998889999999
Q ss_pred EeCC-CCCCCHHHHHHHHHHHHHhcCCceEEE
Q 007178 454 MDEP-STGLDPASRNNLWNVVKRAKQGRAIIL 484 (614)
Q Consensus 454 LDEP-tsgLD~~~~~~i~~~l~~~~~g~tIil 484 (614)
+||| +.|+|....+++.++.+......++++
T Consensus 186 iDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv 217 (295)
T 1ls1_A 186 VDTAGRLQIDEPLMGELARLKEVLGPDEVLLV 217 (295)
T ss_dssp EECCCCSSCCHHHHHHHHHHHHHHCCSEEEEE
T ss_pred EeCCCCccccHHHHHHHHHHhhhcCCCEEEEE
Confidence 9999 999999999988888776654444443
No 155
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.18 E-value=1.1e-11 Score=128.45 Aligned_cols=111 Identities=20% Similarity=0.207 Sum_probs=83.4
Q ss_pred eeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHh
Q 007178 316 LSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYG 395 (614)
Q Consensus 316 isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~ 395 (614)
++++.++|++++++|||||||||+++.|++.++++.|+|.+.+.|..... ..|+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~---------------------a~eq----- 150 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAA---------------------AIEQ----- 150 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHH---------------------HHHH-----
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHH---------------------HHHH-----
Confidence 45667889999999999999999999999999999999999887753210 0121
Q ss_pred hhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHH---HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHH
Q 007178 396 RLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRL---SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNV 472 (614)
Q Consensus 396 ~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl---~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~ 472 (614)
...+++..++. . ..+.|+|+.+++ ++++|+..+|+++|+|||.. ......+++.
T Consensus 151 -------------L~~~~~~~gl~---~----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~e 207 (306)
T 1vma_A 151 -------------LKIWGERVGAT---V----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEE 207 (306)
T ss_dssp -------------HHHHHHHHTCE---E----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHH
T ss_pred -------------HHHHHHHcCCc---E----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHH
Confidence 23345556663 2 235689999999 89999999999999999964 3445555555
Q ss_pred HHH
Q 007178 473 VKR 475 (614)
Q Consensus 473 l~~ 475 (614)
+++
T Consensus 208 L~~ 210 (306)
T 1vma_A 208 LRK 210 (306)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 156
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.12 E-value=1.7e-11 Score=134.07 Aligned_cols=52 Identities=13% Similarity=0.056 Sum_probs=49.5
Q ss_pred cceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCC
Q 007178 310 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR 362 (614)
Q Consensus 310 ~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~ 362 (614)
..+++|+||+|++ |++||+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence 3589999999999 999999999999999999999999999999999998875
No 157
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.02 E-value=1.6e-10 Score=126.36 Aligned_cols=176 Identities=10% Similarity=0.074 Sum_probs=114.1
Q ss_pred cceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcc-EEEEcCeeCCCcHHHhhc-----ceEEEcCCCCCCC
Q 007178 310 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG-TAYVQGLDIRTDMDRIYT-----SMGVCPQEDLLWE 383 (614)
Q Consensus 310 ~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG-~i~i~G~~i~~~~~~~~~-----~ig~~~Q~~~l~~ 383 (614)
...|+++...+++|+++.|.|++|+||||++..+++...+..| .|.+.+.+... .++.+ ..|+-+|
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~--~~l~~r~~~~~~~~~~~------ 261 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSA--QQLVMRMLCAEGNINAQ------ 261 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCH--HHHHHHHHHHHHTCCHH------
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCH--HHHHHHHHHHHcCCCHH------
Confidence 4689999988999999999999999999999999987766545 56555444322 11111 1121111
Q ss_pred CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHh--CCCCEEEEeCCCCCC
Q 007178 384 TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI--GNPKVVYMDEPSTGL 461 (614)
Q Consensus 384 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~--~~p~vllLDEPtsgL 461 (614)
.+. -..+. .+..+++.++++.++..+ ..-.....+|.++.+ +.+++++ .+|+++++|+++...
T Consensus 262 ------~l~----~g~l~-~~~~~~~~~a~~~l~~~~--l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~ 326 (454)
T 2r6a_A 262 ------NLR----TGKLT-PEDWGKLTMAMGSLSNAG--IYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQ 326 (454)
T ss_dssp ------HHH----TSCCC-HHHHHHHHHHHHHHHSSC--EEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSC
T ss_pred ------HHh----cCCCC-HHHHHHHHHHHHHHhcCC--EEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhc
Confidence 111 01122 222344555565554432 333345689999987 4566665 789999999999877
Q ss_pred CH--------HHHHHHHHHHHHh-cC-CceEEEEcC---------C--HH--------HHHhhCCEEEEEeCCEEE
Q 007178 462 DP--------ASRNNLWNVVKRA-KQ-GRAIILTTH---------S--ME--------EAEALCDRLGIFVDGSLQ 508 (614)
Q Consensus 462 D~--------~~~~~i~~~l~~~-~~-g~tIil~TH---------~--~~--------e~~~l~dri~il~~G~l~ 508 (614)
++ ....++.+.|+.+ ++ |.+||+++| + +. .++..||.|++|..++..
T Consensus 327 ~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~~ 402 (454)
T 2r6a_A 327 GSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDYY 402 (454)
T ss_dssp CSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC-
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEeccccc
Confidence 43 2334555566664 33 899999999 2 22 567889999999987653
No 158
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=99.01 E-value=9.2e-12 Score=137.15 Aligned_cols=174 Identities=14% Similarity=0.098 Sum_probs=109.8
Q ss_pred eeeEEEeCCcEEEEECCCCCcHHHHHHHHhC--CCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCC--CCHHHH
Q 007178 315 GLSLALPSGECFGMLGPNGAGKTTFISMMIG--ITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWET--LTGREH 390 (614)
Q Consensus 315 ~isl~i~~Gei~~LlG~NGaGKTTll~~l~G--l~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~--lTv~e~ 390 (614)
-+++++.++..+.+.|++||||||+++.|.+ +.+++.|++.+.+.|.....-..... +| .+... -...+-
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~---lP---hl~~~Vvtd~~~a 232 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEG---IP---HLLTEVVTDMKDA 232 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTT---CT---TBSSSCBCSHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhcc---CC---cccceeecCHHHH
Confidence 3568888999999999999999999999876 66778899988887765311111111 11 11100 012221
Q ss_pred HHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCccc---ccCCCCChhHHHHH----------HHHHHHhCCCC-EEEEeC
Q 007178 391 LLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVAD---KQAGKYSGGMKRRL----------SVAISLIGNPK-VVYMDE 456 (614)
Q Consensus 391 l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~---~~~~~LSgG~kqrl----------~ia~al~~~p~-vllLDE 456 (614)
...... ..++.+++. ++++..|+.+ ..+ +....+|+||+|+. .+|+++...|. ++++||
T Consensus 233 ~~~L~~----~~~EmerR~-~ll~~~Gv~~--i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE 305 (512)
T 2ius_A 233 ANALRW----CVNEMERRY-KLMSALGVRN--LAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDE 305 (512)
T ss_dssp HHHHHH----HHHHHHHHH-HHHHHTTCSS--HHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEET
T ss_pred HHHHHH----HHHHHHHHH-HHHHHcCCcc--HHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeC
Confidence 211111 134555554 6788888752 322 22346788987752 35566778898 899999
Q ss_pred CCCCCCHHHHHHHHHHHHHh----c-CCceEEEEcCCHH-------HHHhhCCEEEEE
Q 007178 457 PSTGLDPASRNNLWNVVKRA----K-QGRAIILTTHSME-------EAEALCDRLGIF 502 (614)
Q Consensus 457 PtsgLD~~~~~~i~~~l~~~----~-~g~tIil~TH~~~-------e~~~l~dri~il 502 (614)
+++-+|.. .+.+.+.+.++ + .|.++|++||.++ ....+.+||++-
T Consensus 306 ~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lr 362 (512)
T 2ius_A 306 FADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFT 362 (512)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEEC
T ss_pred HHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEE
Confidence 99988843 34455555432 2 3889999999987 455677887653
No 159
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.99 E-value=5.8e-10 Score=117.77 Aligned_cols=144 Identities=17% Similarity=0.242 Sum_probs=84.8
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEE-EEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhh
Q 007178 319 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA-YVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRL 397 (614)
Q Consensus 319 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i-~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~ 397 (614)
.+++|+++.|.||||+|||||...++.......|.+ +++..... ... ..+.+|+-+|+
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~-~~~-~a~~lG~~~~~------------------- 115 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHAL-DPE-YAKKLGVDTDS------------------- 115 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC-CHH-HHHHTTCCGGG-------------------
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCc-CHH-HHHHcCCCHHH-------------------
Confidence 688999999999999999999887776544333433 33332110 000 00111111110
Q ss_pred cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhC--CCCEEEEeCCCCCC----------CH--
Q 007178 398 KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG--NPKVVYMDEPSTGL----------DP-- 463 (614)
Q Consensus 398 ~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~--~p~vllLDEPtsgL----------D~-- 463 (614)
+-+ . ...+. .+-+.++++++. +|+++++|||++.+ |+
T Consensus 116 ------------------l~i-----~----~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~ 166 (349)
T 2zr9_A 116 ------------------LLV-----S----QPDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHV 166 (349)
T ss_dssp ------------------CEE-----E----CCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CC
T ss_pred ------------------eEE-----e----cCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchh
Confidence 000 0 01122 234567777765 49999999999998 33
Q ss_pred -HHHHHHHHHHHHh----c-CCceEEEEcCCHHH----------------HHhhCCEEEEEeCCEEEEEcC
Q 007178 464 -ASRNNLWNVVKRA----K-QGRAIILTTHSMEE----------------AEALCDRLGIFVDGSLQCIGN 512 (614)
Q Consensus 464 -~~~~~i~~~l~~~----~-~g~tIil~TH~~~e----------------~~~l~dri~il~~G~l~~~g~ 512 (614)
...+.+.+.++++ + .|.|||+++|..+. ++.+||.++.++.++....|+
T Consensus 167 ~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 167 GLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 2223444444432 3 48999999997542 567899999988877655543
No 160
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.96 E-value=1.9e-11 Score=121.33 Aligned_cols=74 Identities=12% Similarity=0.138 Sum_probs=52.0
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc------
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD------ 364 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~------ 364 (614)
.|+++|+.+.|+ . ++++++ ++++|+||||||||||+++|+|++.|++|+|.++|.++...
T Consensus 9 ~l~l~~~~~~~~-------~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~ 74 (227)
T 1qhl_A 9 SLTLINWNGFFA-------R------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRD 74 (227)
T ss_dssp EEEEEEETTEEE-------E------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC----------------
T ss_pred EEEEEeeecccC-------C------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccc
Confidence 478888876553 1 466666 89999999999999999999999999999999999887321
Q ss_pred ---HHHhhcceEEEcCC
Q 007178 365 ---MDRIYTSMGVCPQE 378 (614)
Q Consensus 365 ---~~~~~~~ig~~~Q~ 378 (614)
....+.+++|++|+
T Consensus 75 ~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 75 KGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp --CGGGBCSSEEEEEEE
T ss_pred cchhhHhhcCcEEEEEe
Confidence 11235689999984
No 161
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.95 E-value=1.5e-11 Score=139.21 Aligned_cols=156 Identities=15% Similarity=0.100 Sum_probs=102.6
Q ss_pred cceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCc-cEEEEcCeeCCCcHHHhhcceEEEcCCC---------
Q 007178 310 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS-GTAYVQGLDIRTDMDRIYTSMGVCPQED--------- 379 (614)
Q Consensus 310 ~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~s-G~i~i~G~~i~~~~~~~~~~ig~~~Q~~--------- 379 (614)
..+++++++.+.+|+.+.|+||||+|||||+++|+|+.++.. |.+.+++.+... ....+++|||..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~----~~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDE----NMPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCT----TSCEEEEEETTHHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccc----cCCcEEEEecchHHHHHHHHH
Confidence 579999999999999999999999999999999999999887 888888866532 234588888753
Q ss_pred -------------CCCCCCCHHHHHHHHhh-hcCCCc-hhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 007178 380 -------------LLWETLTGREHLLFYGR-LKNLKG-PALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 444 (614)
Q Consensus 380 -------------~l~~~lTv~e~l~~~~~-~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~a 444 (614)
..+..+++.+|+..... ..+.+- .+...... +.+|..+ ......+.+|+|++|++..++.
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~---~L~G~~~--~~~~~~g~~~~g~~~~i~~g~~ 197 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAG---ALLGDVR--HDPFQSGGLGTPAHERVEPGMI 197 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHH---HHHCEEC--CCCC----CCCCGGGGEECCHH
T ss_pred HhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHH---hcCceEE--echhhcCCccccccccccCcee
Confidence 11112222222211000 000000 00000112 2233211 2233446799999999999999
Q ss_pred HhCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007178 445 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKR 475 (614)
Q Consensus 445 l~~~p~vllLDEPtsgLD~~~~~~i~~~l~~ 475 (614)
...++.+|+|||... |++..+..+.+.|.+
T Consensus 198 ~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 198 HRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 999999999999988 899999999998875
No 162
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.95 E-value=6.8e-13 Score=135.44 Aligned_cols=132 Identities=14% Similarity=0.151 Sum_probs=91.2
Q ss_pred EeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc-HHHhhcceE
Q 007178 295 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDRIYTSMG 373 (614)
Q Consensus 295 ~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~-~~~~~~~ig 373 (614)
+++.+.|++ ..+++++++++++| ++|+||||+|||||+++|+|... .|.+.++|.++... ....++.++
T Consensus 53 ~~l~~~~~~------~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 122 (278)
T 1iy2_A 53 KEIVEFLKN------PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 122 (278)
T ss_dssp HHHHHHHHC------HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHH
T ss_pred HHHHHHHHC------HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHH
Confidence 345555642 46899999999999 89999999999999999999885 79999998765321 112234577
Q ss_pred EEcCCCC-CCCCCCHHHHHHHHhhhcCC----CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCC
Q 007178 374 VCPQEDL-LWETLTGREHLLFYGRLKNL----KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 448 (614)
Q Consensus 374 ~~~Q~~~-l~~~lTv~e~l~~~~~~~~~----~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~ 448 (614)
+++|... ..+.+++.|++...+..++. ..++..+.+.++ ..+|||||+||+.+++|+..+
T Consensus 123 ~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~l---------------l~~lsgg~~~~~~i~~a~t~~ 187 (278)
T 1iy2_A 123 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL---------------LVEMDGFEKDTAIVVMAATNR 187 (278)
T ss_dssp HHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHH---------------HHHHTTCCTTCCEEEEEEESC
T ss_pred HHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHH---------------HHHHhCCCCCCCEEEEEecCC
Confidence 7888743 55667888888544322211 111222222222 234889999999999999999
Q ss_pred CCE
Q 007178 449 PKV 451 (614)
Q Consensus 449 p~v 451 (614)
|++
T Consensus 188 p~~ 190 (278)
T 1iy2_A 188 PDI 190 (278)
T ss_dssp TTS
T ss_pred chh
Confidence 986
No 163
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.93 E-value=3.5e-11 Score=115.45 Aligned_cols=134 Identities=11% Similarity=0.140 Sum_probs=75.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCC-----------CccEEEEcCeeCCC---cHHHhhcceEEEcCCCC-------CCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGITRT-----------TSGTAYVQGLDIRT---DMDRIYTSMGVCPQEDL-------LWE 383 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~~p-----------~sG~i~i~G~~i~~---~~~~~~~~ig~~~Q~~~-------l~~ 383 (614)
.++|+|+||||||||++.++|...+ ++|+|.++|+++.- +....++..++++|... .++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 6899999999999999999998765 58999999976521 11111112223332110 011
Q ss_pred CC--CHHHHHHHHh-hhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCC
Q 007178 384 TL--TGREHLLFYG-RLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTG 460 (614)
Q Consensus 384 ~l--Tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsg 460 (614)
.. ...+++.... .++.... ....+..++.++++ ..-.++....|++++.+|+++++| ||+
T Consensus 111 ~~~~~s~~~~~~~~~~~~~~~~--~~~~i~~v~nK~Dl-------------~~~~~~~~~~a~~l~~~~~~~~ld--~Sa 173 (191)
T 1oix_A 111 IAKHLTYENVERWLKELRDHAD--SNIVIMLVGNKSDL-------------RHLRAVPTDEARAFAEKNGLSFIE--TSA 173 (191)
T ss_dssp TTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGG-------------GGGCCSCHHHHHHHHHHTTCEEEE--CCT
T ss_pred CcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccc-------------ccccccCHHHHHHHHHHcCCEEEE--EeC
Confidence 10 0112221110 0000000 00000011111122 111123467899999999999999 999
Q ss_pred CCHHHHHHHHHHHHH
Q 007178 461 LDPASRNNLWNVVKR 475 (614)
Q Consensus 461 LD~~~~~~i~~~l~~ 475 (614)
+|+.+.+++++.|.+
T Consensus 174 ld~~~v~~l~~~l~~ 188 (191)
T 1oix_A 174 LDSTNVEAAFQTILT 188 (191)
T ss_dssp TTCTTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999999998865
No 164
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.92 E-value=7.6e-13 Score=133.01 Aligned_cols=128 Identities=16% Similarity=0.172 Sum_probs=88.9
Q ss_pred cceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc-HHHhhcceEEEcCCC-CCCCCCCH
Q 007178 310 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDRIYTSMGVCPQED-LLWETLTG 387 (614)
Q Consensus 310 ~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~-~~~~~~~ig~~~Q~~-~l~~~lTv 387 (614)
..+++++++++++| ++|+||||+|||||+++|+|... .|.+.++|.++... ....++.+++++|.. ...+.+++
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~ 113 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVF 113 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEE
Confidence 46899999999999 99999999999999999999875 79999998765321 112234567788864 34566777
Q ss_pred HHHHHHHhhhcCC----CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCC
Q 007178 388 REHLLFYGRLKNL----KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPS 458 (614)
Q Consensus 388 ~e~l~~~~~~~~~----~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPt 458 (614)
.|++...+..++. ..++..+.+.+++ ..|||||+||+.+++|+..+|++ +|++.
T Consensus 114 ~Deid~l~~~~~~~~~~~~~~~~~~~~~ll---------------~~l~g~~~~~~~i~~a~t~~p~~--ld~~l 171 (254)
T 1ixz_A 114 IDEIDAVGRKRGSGVGGGNDEREQTLNQLL---------------VEMDGFEKDTAIVVMAATNRPDI--LDPAL 171 (254)
T ss_dssp EETHHHHHC---------CHHHHHHHHHHH---------------HHHHTCCTTCCEEEEEEESCGGG--SCGGG
T ss_pred ehhhhhhhcccCccccccchHHHHHHHHHH---------------HHHhCCCCCCCEEEEEccCCchh--CCHHH
Confidence 7888544332211 1122222233322 34789999999999999999987 67653
No 165
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.79 E-value=2.4e-11 Score=129.38 Aligned_cols=138 Identities=17% Similarity=0.261 Sum_probs=90.0
Q ss_pred cceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCC-CCCCCCHH
Q 007178 310 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDL-LWETLTGR 388 (614)
Q Consensus 310 ~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~-l~~~lTv~ 388 (614)
..+++++++++++|++++|.||||||||||+++|+|. .+|++...+ ... +..+..+|++||... ++++.+..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~--~~~--~~~~~~lg~~~q~~~~l~dd~~~~ 228 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVN--LPL--DRLNFELGVAIDQFLVVFEDVKGT 228 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCS--SCT--TTHHHHHGGGTTCSCEEETTCCCS
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEe--ccc--hhHHHHHHHhcchhHHHHHHHHHH
Confidence 4699999999999999999999999999999999985 468776511 111 112224778888764 34444433
Q ss_pred HHHHHHhhhcCCCc-hh--HHHHHHHHHH---HcCCC-----------CCCcccccCCCCChhHHHHHHHHHHHhCCCCE
Q 007178 389 EHLLFYGRLKNLKG-PA--LTQAVEESLK---SVNLF-----------HGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 451 (614)
Q Consensus 389 e~l~~~~~~~~~~~-~~--~~~~~~~~l~---~~~L~-----------~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~v 451 (614)
.++ .++... .. ....+.+.++ .+.+. .....+.....+++|++||+..+++++..|++
T Consensus 229 ~~~-----~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDL 303 (377)
T 1svm_A 229 GGE-----SRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYL 303 (377)
T ss_dssp TTT-----TTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHH
T ss_pred HHH-----HhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCe
Confidence 221 111111 00 1122333443 01011 01234567778999999999999889999999
Q ss_pred EE-EeCCCC
Q 007178 452 VY-MDEPST 459 (614)
Q Consensus 452 ll-LDEPts 459 (614)
++ ||+|+.
T Consensus 304 liyLd~~~~ 312 (377)
T 1svm_A 304 KHCLERSEF 312 (377)
T ss_dssp HHHHHTCTH
T ss_pred EEEEeCCHH
Confidence 88 999987
No 166
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.74 E-value=6.8e-10 Score=107.47 Aligned_cols=75 Identities=15% Similarity=0.151 Sum_probs=48.8
Q ss_pred eeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHH
Q 007178 312 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREH 390 (614)
Q Consensus 312 ~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~ 390 (614)
++.+..++.++|++++|+|||||||||++++|+|.+ |.+.++|.++.......+...|+++|+...++.+++.++
T Consensus 18 ~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 92 (200)
T 4eun_A 18 LYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAE 92 (200)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred hHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHH
Confidence 333334667889999999999999999999999987 899999988754332333356888887544443344443
No 167
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.74 E-value=2.7e-10 Score=109.72 Aligned_cols=35 Identities=9% Similarity=0.252 Sum_probs=31.2
Q ss_pred HHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 007178 439 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR 475 (614)
Q Consensus 439 l~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~ 475 (614)
...|++++.+|++.++| ||++|+...+++++.|.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 35588999999999999 999999999999998865
No 168
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.67 E-value=2.2e-09 Score=113.95 Aligned_cols=136 Identities=15% Similarity=0.154 Sum_probs=85.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC-----------CCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHH---
Q 007178 325 CFGMLGPNGAGKTTFISMMIGITR-----------TTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREH--- 390 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~~-----------p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~--- 390 (614)
+++|+|+||||||||+|.|+|... |+.|++.++|.++. +....|++.|.+. -.+...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~-----l~DT~G~i~~lp~----~lve~f~~t 251 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM-----LVDTVGFIRGIPP----QIVDAFFVT 251 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE-----EEECCCBCSSCCG----GGHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE-----EEeCCCchhcCCH----HHHHHHHHH
Confidence 499999999999999999999876 67799999886542 1123455544221 112111
Q ss_pred HHHHhh----h--cCCCc-----hhHHHHHHHHHHHcCCCCCCcc----cccCCCCChhHHHHHHHH----HHH-hCCCC
Q 007178 391 LLFYGR----L--KNLKG-----PALTQAVEESLKSVNLFHGGVA----DKQAGKYSGGMKRRLSVA----ISL-IGNPK 450 (614)
Q Consensus 391 l~~~~~----~--~~~~~-----~~~~~~~~~~l~~~~L~~~~~~----~~~~~~LSgG~kqrl~ia----~al-~~~p~ 450 (614)
+..... + ...+. .+..+.+.++++.+++.+ .. ..++..+|+|+++|+..+ +++ ..+|+
T Consensus 252 l~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~--~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~ 329 (364)
T 2qtf_A 252 LSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSG--KPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFD 329 (364)
T ss_dssp HHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCS--CCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEE
T ss_pred HHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCC--CCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCc
Confidence 110000 0 01111 112234567778777642 22 345677898988888877 666 44555
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHH
Q 007178 451 VVYMDEPSTGLDPASRNNLWNVVKR 475 (614)
Q Consensus 451 vllLDEPtsgLD~~~~~~i~~~l~~ 475 (614)
+ +|+|++|....+.+++.|.+
T Consensus 330 ~----~~~SA~~g~gi~~L~~~I~~ 350 (364)
T 2qtf_A 330 V----IPISALKRTNLELLRDKIYQ 350 (364)
T ss_dssp E----EECBTTTTBSHHHHHHHHHH
T ss_pred E----EEEECCCCcCHHHHHHHHHH
Confidence 4 89999999999999999876
No 169
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.62 E-value=4.7e-09 Score=101.68 Aligned_cols=137 Identities=18% Similarity=0.239 Sum_probs=88.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchh
Q 007178 325 CFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA 404 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~~~ 404 (614)
++||+|||||||||+.++|+++ |...+++-++ .+.+. + +.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~~-------~~~~~---~-----~~-------------------- 43 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADVV-------AREVV---A-----KD-------------------- 43 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHHH-------HHHTT---C-----SS--------------------
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchHHH-------HHHHc---c-----CC--------------------
Confidence 6899999999999999999983 5555543221 11110 0 00
Q ss_pred HHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEE
Q 007178 405 LTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIIL 484 (614)
Q Consensus 405 ~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil 484 (614)
...+.++.+.+|.. .. .+.|+.+|..++.....+|+..-.+ .+.++|..++.+++.+.... +.++|+
T Consensus 44 -~~~~~~i~~~~g~~---~~------~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~-~~~vv~ 110 (206)
T 1jjv_A 44 -SPLLSKIVEHFGAQ---IL------TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQT-APYTLF 110 (206)
T ss_dssp -CHHHHHHHHHHCTT---CC------------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCC-SSEEEE
T ss_pred -hHHHHHHHHHhCHH---Hh------ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcC-CCEEEE
Confidence 01234555566653 11 3678888999998888887644333 45678888888888776543 558999
Q ss_pred EcCCHHHH--HhhCCEEEEEeCCEEEEEcCHHHHHHhcC
Q 007178 485 TTHSMEEA--EALCDRLGIFVDGSLQCIGNPKELKARYG 521 (614)
Q Consensus 485 ~TH~~~e~--~~l~dri~il~~G~l~~~g~~~~l~~~~~ 521 (614)
.+|.+.+. ...||++++++ .+++...++..
T Consensus 111 ~~~~l~e~~~~~~~d~vi~l~-------~~~e~~~~Rl~ 142 (206)
T 1jjv_A 111 VVPLLIENKLTALCDRILVVD-------VSPQTQLARSA 142 (206)
T ss_dssp ECTTTTTTTCGGGCSEEEEEE-------CCHHHHHHHHC
T ss_pred EechhhhcCcHhhCCEEEEEE-------CCHHHHHHHHH
Confidence 99998876 67899987774 56777766653
No 170
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.58 E-value=2.3e-09 Score=119.47 Aligned_cols=91 Identities=18% Similarity=0.181 Sum_probs=60.5
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcc-EEE-EcCeeCCC-----------cHHHhhcceEEEcCCCCCCCCC
Q 007178 319 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG-TAY-VQGLDIRT-----------DMDRIYTSMGVCPQEDLLWETL 385 (614)
Q Consensus 319 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG-~i~-i~G~~i~~-----------~~~~~~~~ig~~~Q~~~l~~~l 385 (614)
.+++|++++|+|+|||||||++++|+|.+.|++| ++. ++|.++.. +....++.+++++|+ +
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~------l 438 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASE------I 438 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHH------H
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHH------H
Confidence 5789999999999999999999999999999987 785 88866521 011123446666664 1
Q ss_pred CHHHHHHHHhhhcCCCchhHHHHHHHHHHHcC
Q 007178 386 TGREHLLFYGRLKNLKGPALTQAVEESLKSVN 417 (614)
Q Consensus 386 Tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 417 (614)
+..+++.+.. .+.+....++++.++++.+|
T Consensus 439 ~~~~~ivi~~--~~~~~~~~r~~~r~lL~~~g 468 (552)
T 3cr8_A 439 TKNRGIAICA--PIAPYRQTRRDVRAMIEAVG 468 (552)
T ss_dssp HHTTCEEEEC--CCCCCHHHHHHHHHHHHTTS
T ss_pred HhcCCEEEEe--cCCccHHHHHHHHHHHHHcC
Confidence 2223222211 11123455677888888877
No 171
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.55 E-value=1.8e-08 Score=105.04 Aligned_cols=79 Identities=13% Similarity=0.064 Sum_probs=61.3
Q ss_pred eeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcH-----HHh-----hcceEEE-cCCCCC
Q 007178 313 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM-----DRI-----YTSMGVC-PQEDLL 381 (614)
Q Consensus 313 l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~-----~~~-----~~~ig~~-~Q~~~l 381 (614)
+++++|++++|++++++|+||+||||++..|++.+.++.|+|.+.+.|+.... ..+ +.+++++ +|....
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~ 174 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNA 174 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCC
Confidence 46889999999999999999999999999999999999999999998885432 222 5679999 676544
Q ss_pred CCCCCHHHHH
Q 007178 382 WETLTGREHL 391 (614)
Q Consensus 382 ~~~lTv~e~l 391 (614)
.+..++.+++
T Consensus 175 ~p~~~~~~~l 184 (320)
T 1zu4_A 175 DPASVVFDAI 184 (320)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 4433333433
No 172
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.54 E-value=1e-08 Score=103.12 Aligned_cols=65 Identities=22% Similarity=0.286 Sum_probs=52.8
Q ss_pred eeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHh---CCCCCCccEEE--------EcCeeCCC--cHHHhhcceEEEcCC
Q 007178 312 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMI---GITRTTSGTAY--------VQGLDIRT--DMDRIYTSMGVCPQE 378 (614)
Q Consensus 312 ~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~---Gl~~p~sG~i~--------i~G~~i~~--~~~~~~~~ig~~~Q~ 378 (614)
++++.+ ++|++++|+|||||||||++++|+ |+..|++|.++ .+|.++.. ....+++.+|+++|.
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 95 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVS 95 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec
Confidence 444443 789999999999999999999999 99999999999 89988743 345677889999985
Q ss_pred C
Q 007178 379 D 379 (614)
Q Consensus 379 ~ 379 (614)
+
T Consensus 96 ~ 96 (252)
T 4e22_A 96 Q 96 (252)
T ss_dssp E
T ss_pred C
Confidence 4
No 173
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.53 E-value=7.7e-08 Score=111.68 Aligned_cols=74 Identities=16% Similarity=0.157 Sum_probs=61.0
Q ss_pred cccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCC-CCCHHHHHHHHHHHHHhc-CCceEEEE-cCCHHHHHhhCCE
Q 007178 425 DKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPST-GLDPASRNNLWNVVKRAK-QGRAIILT-THSMEEAEALCDR 498 (614)
Q Consensus 425 ~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPts-gLD~~~~~~i~~~l~~~~-~g~tIil~-TH~~~e~~~l~dr 498 (614)
+..+.-+|.|+.+|..++.+++.+++++++|||.. ++|......+++.+.... +.++|+++ ||+.+.+..++++
T Consensus 185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~ 261 (773)
T 2xau_A 185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFND 261 (773)
T ss_dssp TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTS
T ss_pred CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcC
Confidence 44566789999999999999999999999999996 999888777777666544 46788885 9999888877764
No 174
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.50 E-value=1.4e-07 Score=99.58 Aligned_cols=71 Identities=21% Similarity=0.340 Sum_probs=51.4
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEE-EEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHH
Q 007178 319 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA-YVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHL 391 (614)
Q Consensus 319 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i-~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~l 391 (614)
-+++|+++.|.||||+|||||+..+++...+..|.+ ++++....... ..+++|+.+|+..+....++++.+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~--ra~rlgv~~~~l~i~~~~~~e~~l 128 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPV--YAKNLGVDLKSLLISQPDHGEQAL 128 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH--HHHHHTCCGGGCEEECCSSHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchH--HHHHcCCchhhhhhhhccCHHHHH
Confidence 588999999999999999999999999888777865 67765543222 334577777765544444555544
No 175
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.47 E-value=1.1e-07 Score=100.54 Aligned_cols=126 Identities=13% Similarity=0.197 Sum_probs=83.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc
Q 007178 323 GECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG 402 (614)
Q Consensus 323 Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~~ 402 (614)
.-.++++|+||+|||||++.|+|.. +. +.+.+..+. ...++.++++..
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~-~~-----~~~~~~~t~----~~~~~~~~~~~~---------------------- 214 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAK-PE-----IASYPFTTR----GINVGQFEDGYF---------------------- 214 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSC-CE-----EECCTTCSS----CEEEEEEEETTE----------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-Cc-----cCCCCCeee----ceeEEEEEecCc----------------------
Confidence 4579999999999999999999865 21 222221110 012333333210
Q ss_pred hhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEe-CCCCCCCHHHHHHHHHHHHHhcCCce
Q 007178 403 PALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMD-EPSTGLDPASRNNLWNVVKRAKQGRA 481 (614)
Q Consensus 403 ~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLD-EPtsgLD~~~~~~i~~~l~~~~~g~t 481 (614)
-+..++.. ...+.+...+|+|++|++. +.+...++-++++| +|.+|+|......+++.+.+...+..
T Consensus 215 ---------~~~l~Dt~--G~~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~p 282 (357)
T 2e87_A 215 ---------RYQIIDTP--GLLDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLP 282 (357)
T ss_dssp ---------EEEEEECT--TTSSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSC
T ss_pred ---------eEEEEeCC--CccccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCC
Confidence 01112222 1334567789999998876 66666788899999 99999999998888888876544778
Q ss_pred EEEEc--CCHHHH
Q 007178 482 IILTT--HSMEEA 492 (614)
Q Consensus 482 Iil~T--H~~~e~ 492 (614)
++++. ||+...
T Consensus 283 iilV~NK~Dl~~~ 295 (357)
T 2e87_A 283 FLVVINKIDVADE 295 (357)
T ss_dssp EEEEECCTTTCCH
T ss_pred EEEEEECcccCCh
Confidence 88877 877543
No 176
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.47 E-value=4.9e-08 Score=94.03 Aligned_cols=35 Identities=23% Similarity=0.275 Sum_probs=30.1
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcc
Q 007178 318 LALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG 352 (614)
Q Consensus 318 l~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG 352 (614)
+++.+|++++|+|||||||||++++|++.+.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46789999999999999999999999999977666
No 177
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.47 E-value=3.9e-09 Score=102.08 Aligned_cols=61 Identities=20% Similarity=0.233 Sum_probs=47.2
Q ss_pred EeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEE--EEcCeeCC
Q 007178 295 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA--YVQGLDIR 362 (614)
Q Consensus 295 ~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i--~i~G~~i~ 362 (614)
+|+++.++ ...+.++.++..++|++++|+|||||||||+.++|++.+. ..|.+ +++|.++.
T Consensus 3 ~~~~~~~~------~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 3 TNIKWHEC------SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp -------C------CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CCCccccc------ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 45666665 3567888899999999999999999999999999999987 78988 88886654
No 178
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.47 E-value=5.6e-08 Score=92.02 Aligned_cols=134 Identities=13% Similarity=0.133 Sum_probs=81.9
Q ss_pred eeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCe--eC-CCcHH----HhhcceEEEcCCCCC--CC-
Q 007178 314 NGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGL--DI-RTDMD----RIYTSMGVCPQEDLL--WE- 383 (614)
Q Consensus 314 ~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~--~i-~~~~~----~~~~~ig~~~Q~~~l--~~- 383 (614)
+++++++.+| +++|+|||||||||++++|.+++.+++|...-.+. ++ ..... ..+..|.+++|++.- .+
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~ 96 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID 96 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence 6789999999 99999999999999999999999887775432221 11 11100 123568889987531 11
Q ss_pred --CCCHHHHHHHH----hhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCC
Q 007178 384 --TLTGREHLLFY----GRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEP 457 (614)
Q Consensus 384 --~lTv~e~l~~~----~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEP 457 (614)
.+++...+.-. ..+.+ .....+.+.++++.+++.++ ...-++.|+.+++.
T Consensus 97 ~~~~~i~r~~~~~~~~~~~i~g--~~~~~~~~~~~l~~~~l~~~-----~~~~~~qg~~~~l~----------------- 152 (182)
T 3kta_A 97 EDEVVIRRRVYPDGRSSYWLNG--RRATRSEILDILTAAMISPD-----GYNIVLQGDITKFI----------------- 152 (182)
T ss_dssp SSEEEEEEEECTTSCEEEEETT--EEECHHHHHHHHHHTTCCTT-----CTTEECTTCTTHHH-----------------
T ss_pred CcEEEEEEEEEeCCcEEEEECC--eEcCHHHHHHHHHHcCCCCC-----CCEEEEcccHHHHH-----------------
Confidence 12322211000 00111 11224678889999999641 12346777777764
Q ss_pred CCCCCHHHHHHHHHHHH
Q 007178 458 STGLDPASRNNLWNVVK 474 (614)
Q Consensus 458 tsgLD~~~~~~i~~~l~ 474 (614)
-++|..|+++++.+.
T Consensus 153 --~~~~~~r~~~ld~~~ 167 (182)
T 3kta_A 153 --KMSPLERRLLIDDIS 167 (182)
T ss_dssp --HSCHHHHHHHHHHHH
T ss_pred --hCCHHHHHHHHHHHH
Confidence 246777777777664
No 179
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.45 E-value=4e-08 Score=93.88 Aligned_cols=32 Identities=22% Similarity=0.401 Sum_probs=28.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCCCCCccEE
Q 007178 323 GECFGMLGPNGAGKTTFISMMIGITRTTSGTA 354 (614)
Q Consensus 323 Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i 354 (614)
|++++|+||||||||||+++|+|+++++.|.+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~ 32 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFS 32 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEE
Confidence 67899999999999999999999998655543
No 180
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.43 E-value=1.5e-07 Score=102.97 Aligned_cols=61 Identities=20% Similarity=0.254 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHh-----cCCceEEEEcCCHHHHH
Q 007178 433 GGMKRRLSVAISLIGNPKVVYMDEP----------STGLDPASRNNLWNVVKRA-----KQGRAIILTTHSMEEAE 493 (614)
Q Consensus 433 gG~kqrl~ia~al~~~p~vllLDEP----------tsgLD~~~~~~i~~~l~~~-----~~g~tIil~TH~~~e~~ 493 (614)
|++++|-.+++|....|.+|++||+ +.|.|+..++.+.+++..+ ..+..||.+||..+.++
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 6778888899999999999999999 4477887777777777654 24778999999987543
No 181
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.41 E-value=3.4e-09 Score=116.74 Aligned_cols=141 Identities=16% Similarity=0.177 Sum_probs=94.7
Q ss_pred cceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCc-HHHhhcceEEEcCCCC-CCCCCCH
Q 007178 310 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDRIYTSMGVCPQEDL-LWETLTG 387 (614)
Q Consensus 310 ~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~-~~~~~~~ig~~~Q~~~-l~~~lTv 387 (614)
..+++++++.+++| +.|.||||+|||||+++|+|... .|.+.++|.++... .....++++.++|... ..+.+.+
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~ 128 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVF 128 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEE
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEE
Confidence 35788899999999 89999999999999999999875 78999999876432 1122234666777643 4455566
Q ss_pred HHHHHHHhhhcCC----CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCC---
Q 007178 388 REHLLFYGRLKNL----KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTG--- 460 (614)
Q Consensus 388 ~e~l~~~~~~~~~----~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsg--- 460 (614)
.|++...+..++. ..++..+.+.+++. .||||++|+..+++|...+|++ |||+..-
T Consensus 129 IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~---------------~Ldg~~~~~~viviAatn~p~~--LD~aLlr~gR 191 (499)
T 2dhr_A 129 IDEIDAVGRKRGSGVGGGNDEREQTLNQLLV---------------EMDGFEKDTAIVVMAATNRPDI--LDPALLRPGR 191 (499)
T ss_dssp EECGGGTCCCSSSSTTTSSHHHHHHHHHHHH---------------HGGGCCSSCCCEEEECCSCGGG--SCTTTSSTTS
T ss_pred EehHHHHHHhhccCcCCCcHHHHHHHHHHHH---------------HhcccccCccEEEEEecCChhh--cCcccccccc
Confidence 6666433322211 12233333444433 3678888888889999999987 8887642
Q ss_pred ---------CCHHHHHHHHH
Q 007178 461 ---------LDPASRNNLWN 471 (614)
Q Consensus 461 ---------LD~~~~~~i~~ 471 (614)
-|...|+++++
T Consensus 192 fdr~i~i~~Pd~~~R~~IL~ 211 (499)
T 2dhr_A 192 FDRQIAIDAPDVKGREQILR 211 (499)
T ss_dssp SCCEEECCCCCHHHHHHHHH
T ss_pred cceEEecCCCCHHHHHHHHH
Confidence 35666666554
No 182
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.40 E-value=1.1e-07 Score=108.77 Aligned_cols=133 Identities=14% Similarity=0.179 Sum_probs=85.9
Q ss_pred eEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEEcCeeCCC-cHHHhhcceEEEcCCCCCCCCCCHHHHHHH
Q 007178 317 SLALPSGECFGMLGPNGAGKTTFISMMIGITRT--TSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLF 393 (614)
Q Consensus 317 sl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p--~sG~i~i~G~~i~~-~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~ 393 (614)
|+++++|..++|+|+||||||||++.|++...+ +.|+| .+|..+.. ...+.++.+++.+|...++.. ++..|
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~n--- 77 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRVF--- 77 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEEE---
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEEE---
Confidence 457789999999999999999999999976654 67888 67766643 334456678887776554332 11111
Q ss_pred HhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCC-CCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHH
Q 007178 394 YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAG-KYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNV 472 (614)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~-~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i~~~ 472 (614)
..|.+.. .+ +.......-..+..++++| |+.|+|+..++ +|+.
T Consensus 78 -----------------------------liDTpG~~~f-----~~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~-~~~~ 121 (665)
T 2dy1_A 78 -----------------------------LLDAPGYGDF-----VGEIRGALEAADAALVAVS-AEAGVQVGTER-AWTV 121 (665)
T ss_dssp -----------------------------EEECCCSGGG-----HHHHHHHHHHCSEEEEEEE-TTTCSCHHHHH-HHHH
T ss_pred -----------------------------EEeCCCccch-----HHHHHHHHhhcCcEEEEEc-CCcccchhHHH-HHHH
Confidence 1222111 01 1112222335688899999 99999998773 4444
Q ss_pred HHHhcCCceEEEEcCCHHHH
Q 007178 473 VKRAKQGRAIILTTHSMEEA 492 (614)
Q Consensus 473 l~~~~~g~tIil~TH~~~e~ 492 (614)
+++ .+..+|++.|.+|..
T Consensus 122 ~~~--~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 122 AER--LGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHH--TTCCEEEEEECGGGC
T ss_pred HHH--ccCCEEEEecCCchh
Confidence 432 478889999999863
No 183
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.40 E-value=2.3e-08 Score=100.56 Aligned_cols=53 Identities=19% Similarity=0.252 Sum_probs=36.1
Q ss_pred CeEEEEeE-EEEcCCCCCCCccceeeeeeEEEeC---CcEEEEECCCCCcHHHHHHHHhCCC
Q 007178 290 HAIISDNL-RKIYPGRDGNPEKVAVNGLSLALPS---GECFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 290 ~~i~~~~l-~k~y~~~~~~~~~~~l~~isl~i~~---Gei~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
++++++|+ +|.|++ ++.+|+|+||+|.+ |++++|+|++||||||+.++|++.+
T Consensus 16 ~~l~~~~~~~~~~~~-----~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFDE-----EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ---------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEecC-----cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 36899999 999932 36799999999999 9999999999999999999999865
No 184
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.40 E-value=3.1e-08 Score=104.56 Aligned_cols=42 Identities=31% Similarity=0.423 Sum_probs=37.5
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCC
Q 007178 321 PSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR 362 (614)
Q Consensus 321 ~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~ 362 (614)
+++.+++|+|++|||||||++.|+|..++++|+|.+.+.|+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 467899999999999999999999999999999998887764
No 185
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.35 E-value=7.3e-09 Score=109.63 Aligned_cols=173 Identities=16% Similarity=0.208 Sum_probs=87.7
Q ss_pred cceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhC--CCCCCccEEEEcCeeCCCc-HHHhhcceEEEcCCCC-CCCCC
Q 007178 310 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG--ITRTTSGTAYVQGLDIRTD-MDRIYTSMGVCPQEDL-LWETL 385 (614)
Q Consensus 310 ~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~G--l~~p~sG~i~i~G~~i~~~-~~~~~~~ig~~~Q~~~-l~~~l 385 (614)
..+|++++++++ .++++|++|||||||++.|+| ++++.+|.++-.+..+... .....+..+..++.+. .+.+.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDF 100 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCH
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCH
Confidence 458999999998 899999999999999999999 6677778775444332110 0000122333333221 11110
Q ss_pred -CHHHHHH-----HHhhhcCCCchhHHHHH----HHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEe
Q 007178 386 -TGREHLL-----FYGRLKNLKGPALTQAV----EESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMD 455 (614)
Q Consensus 386 -Tv~e~l~-----~~~~~~~~~~~~~~~~~----~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLD 455 (614)
.+++.+. ..+...+.+.+...-.+ ..-+..+++.. -......++.++.++++..++++.+.+|+++|+.
T Consensus 101 ~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG-~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilv 179 (360)
T 3t34_A 101 AAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPG-LTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILA 179 (360)
T ss_dssp HHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCC-BCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCC-CCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEE
Confidence 1111111 11111111100000000 00011112210 0111122456788899999999999999988888
Q ss_pred CCCCCCCHHHHHHHHHHHHHhc-CC-ceEEEEcC
Q 007178 456 EPSTGLDPASRNNLWNVVKRAK-QG-RAIILTTH 487 (614)
Q Consensus 456 EPtsgLD~~~~~~i~~~l~~~~-~g-~tIil~TH 487 (614)
-..+..|... ....++++.+. .| ++|++.|.
T Consensus 180 v~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 180 ISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp EEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred eecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 4444445433 44566666654 34 57777765
No 186
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.27 E-value=4.6e-08 Score=92.01 Aligned_cols=39 Identities=18% Similarity=0.315 Sum_probs=34.3
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC
Q 007178 321 PSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT 363 (614)
Q Consensus 321 ~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~ 363 (614)
.+|++++|+|+|||||||+.++|++.+ |.+.+++.++..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~ 44 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP 44 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc
Confidence 468999999999999999999999875 889999877653
No 187
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.25 E-value=2.6e-06 Score=92.00 Aligned_cols=125 Identities=12% Similarity=0.095 Sum_probs=79.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCC
Q 007178 322 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK 401 (614)
Q Consensus 322 ~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~~~~ 401 (614)
++.+++++|||||||||++..|++.+.+..++|.+-+.|+... ...|.+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~---------------------~a~eqL~~-------- 146 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRP---------------------AAYDQLLQ-------- 146 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCH---------------------HHHHHHHH--------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccch---------------------hHHHHHHH--------
Confidence 5889999999999999999999999998888888766553211 12233332
Q ss_pred chhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCC-CC--CCHHHHHHHHHHHHHhcC
Q 007178 402 GPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPS-TG--LDPASRNNLWNVVKRAKQ 478 (614)
Q Consensus 402 ~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPt-sg--LD~~~~~~i~~~l~~~~~ 478 (614)
+.+..++. .... ......-.-.+-+++.+...+++++|+|+|. .+ .|+....++.++.+..+.
T Consensus 147 ----------~~~~~gv~---~~~~-~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~p 212 (433)
T 3kl4_A 147 ----------LGNQIGVQ---VYGE-PNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKP 212 (433)
T ss_dssp ----------HHHTTTCC---EECC-TTCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCC
T ss_pred ----------HHHhcCCc---eeec-cccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCC
Confidence 22333442 1110 0011111222335666666799999999986 45 888888888887766654
Q ss_pred -CceEEEEcCCH
Q 007178 479 -GRAIILTTHSM 489 (614)
Q Consensus 479 -g~tIil~TH~~ 489 (614)
...+++.+|.-
T Consensus 213 d~vlLVlDa~~g 224 (433)
T 3kl4_A 213 DDVILVIDASIG 224 (433)
T ss_dssp SEEEEEEEGGGG
T ss_pred cceEEEEeCccc
Confidence 44556666543
No 188
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.20 E-value=3.1e-06 Score=89.16 Aligned_cols=50 Identities=12% Similarity=0.064 Sum_probs=38.9
Q ss_pred hCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc----CCceEEEEcCCHHHHHhhC
Q 007178 446 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK----QGRAIILTTHSMEEAEALC 496 (614)
Q Consensus 446 ~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~----~g~tIil~TH~~~e~~~l~ 496 (614)
.++|.++++||+... |+.....+.+.+.+.. .+.++|++||+.+..+.+.
T Consensus 123 ~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~ 176 (389)
T 1fnn_A 123 RDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLD 176 (389)
T ss_dssp TTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSC
T ss_pred cCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhC
Confidence 366899999999876 9888888888876542 4789999999987555443
No 189
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.07 E-value=9.6e-07 Score=83.75 Aligned_cols=36 Identities=14% Similarity=0.159 Sum_probs=30.4
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCCC-CccEEEE
Q 007178 321 PSGECFGMLGPNGAGKTTFISMMIGITRT-TSGTAYV 356 (614)
Q Consensus 321 ~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-~sG~i~i 356 (614)
.+|++++|+||||||||||+++|++..++ ..|.|..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 36899999999999999999999998864 4566544
No 190
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.05 E-value=1.3e-06 Score=86.24 Aligned_cols=40 Identities=15% Similarity=0.102 Sum_probs=35.8
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeC
Q 007178 318 LALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI 361 (614)
Q Consensus 318 l~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i 361 (614)
.+.++|++++|.|+|||||||++++|+|. +|+|.+.|++.
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~ 54 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV 54 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence 35578999999999999999999999998 78999998764
No 191
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.03 E-value=9.1e-07 Score=85.45 Aligned_cols=44 Identities=20% Similarity=0.206 Sum_probs=39.0
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCC
Q 007178 319 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR 362 (614)
Q Consensus 319 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~ 362 (614)
..++|++++|.|+|||||||++++|++.+++..|.|.+.+.|..
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~ 61 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH 61 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcc
Confidence 35689999999999999999999999999998999988776653
No 192
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.01 E-value=2.8e-07 Score=95.10 Aligned_cols=153 Identities=12% Similarity=0.182 Sum_probs=83.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCC---CCCCCCHHHHHHHHhhhc
Q 007178 322 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDL---LWETLTGREHLLFYGRLK 398 (614)
Q Consensus 322 ~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~---l~~~lTv~e~l~~~~~~~ 398 (614)
++..++|+|++|||||||++.|+|... .+......+. ..+..|++++++. +++ |...+......+.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~------~i~s~~~~tT---r~~~~gi~~~~~~~i~~iD--TpG~~~~~~~~l~ 75 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKI------SITSRKAQTT---RHRIVGIHTEGAYQAIYVD--TPGLHMEEKRAIN 75 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSE------EECCCCSSCC---SSCEEEEEEETTEEEEEES--SSSCCHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCc------cccCCCCCcc---eeeEEEEEEECCeeEEEEE--CcCCCccchhhHH
Confidence 445899999999999999999999642 1111111111 1234577776542 111 1100000000000
Q ss_pred CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHh--CCCCEEEEeCCCCCCCHHH-HHHHHHHHHH
Q 007178 399 NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI--GNPKVVYMDEPSTGLDPAS-RNNLWNVVKR 475 (614)
Q Consensus 399 ~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~--~~p~vllLDEPtsgLD~~~-~~~i~~~l~~ 475 (614)
+...+.+...++..++.- -..|. ..+|+|++ .++.++. +.|.++++ +.+|... +..+.+.+.+
T Consensus 76 ----~~~~~~~~~~l~~~D~vl-~Vvd~--~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~ 141 (301)
T 1ega_A 76 ----RLMNKAASSSIGDVELVI-FVVEG--TRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQF 141 (301)
T ss_dssp ----HHHTCCTTSCCCCEEEEE-EEEET--TCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHhcCCEEE-EEEeC--CCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHH
Confidence 000000111122222210 01222 23899886 4555665 78999999 7899876 6777777776
Q ss_pred hcC--C--ceEEEEcCCHHHHHhhCCEE
Q 007178 476 AKQ--G--RAIILTTHSMEEAEALCDRL 499 (614)
Q Consensus 476 ~~~--g--~tIil~TH~~~e~~~l~dri 499 (614)
+.+ | ..+.+++|+.+.++.++|.+
T Consensus 142 l~~~~~~~~~i~iSA~~g~~v~~l~~~i 169 (301)
T 1ega_A 142 LASQMNFLDIVPISAETGLNVDTIAAIV 169 (301)
T ss_dssp HHTTSCCSEEEECCTTTTTTHHHHHHHH
T ss_pred HHHhcCcCceEEEECCCCCCHHHHHHHH
Confidence 532 4 36778888887777777765
No 193
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.00 E-value=5.3e-06 Score=86.81 Aligned_cols=128 Identities=13% Similarity=0.211 Sum_probs=80.7
Q ss_pred cceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHH
Q 007178 310 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 389 (614)
Q Consensus 310 ~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e 389 (614)
...|+.+.-.+.+|+++.|.|++|+||||+..-++.......+. +.|+.= .++..+
T Consensus 33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~------------------Vl~fSl------Ems~~q 88 (338)
T 4a1f_A 33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRG------------------VAVFSL------EMSAEQ 88 (338)
T ss_dssp CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCE------------------EEEEES------SSCHHH
T ss_pred ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCe------------------EEEEeC------CCCHHH
Confidence 45778877789999999999999999999998887543322222 233221 234433
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHH
Q 007178 390 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 469 (614)
Q Consensus 390 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i 469 (614)
.. .++......+++. +-..+.||.++++|+..|...+.++++.+.|+|...+| ++
T Consensus 89 l~---------------~Rlls~~~~v~~~-----~l~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~-----~i 143 (338)
T 4a1f_A 89 LA---------------LRALSDLTSINMH-----DLESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE-----QI 143 (338)
T ss_dssp HH---------------HHHHHHHHCCCHH-----HHHHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH-----HH
T ss_pred HH---------------HHHHHHhhCCCHH-----HHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH-----HH
Confidence 22 2222222222221 11224799999999999999999999999999865432 44
Q ss_pred HHHHHHh--cC-CceEEEEc
Q 007178 470 WNVVKRA--KQ-GRAIILTT 486 (614)
Q Consensus 470 ~~~l~~~--~~-g~tIil~T 486 (614)
...++++ +. |..+|++-
T Consensus 144 ~~~ir~l~~~~gg~~lIVID 163 (338)
T 4a1f_A 144 RLQLRKLKSQHKELGIAFID 163 (338)
T ss_dssp HHHHHHHHHHCTTEEEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEe
Confidence 4444443 23 56677663
No 194
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.99 E-value=3.1e-08 Score=103.75 Aligned_cols=49 Identities=18% Similarity=0.231 Sum_probs=41.7
Q ss_pred cceeeeeeEEEeCCcE--EEEECCCCCcHHHHHHHHhCCCCCCccEEEEcC
Q 007178 310 KVAVNGLSLALPSGEC--FGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG 358 (614)
Q Consensus 310 ~~~l~~isl~i~~Gei--~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G 358 (614)
..+++.++..+++|++ +.+.||+|+||||+++++++.+.+..+.+.+.+
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~ 81 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLE 81 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEE
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEE
Confidence 4688889999999998 999999999999999999998877766544443
No 195
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.99 E-value=2.4e-06 Score=82.17 Aligned_cols=39 Identities=21% Similarity=0.107 Sum_probs=24.8
Q ss_pred ccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCC
Q 007178 309 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 309 ~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
...+++|+||++.+|++++|+|++||||||+.+.|++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 457999999999999999999999999999999999765
No 196
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.97 E-value=6.7e-07 Score=93.05 Aligned_cols=55 Identities=13% Similarity=0.149 Sum_probs=44.5
Q ss_pred eEEEEcCCCCCCCccceeeeeeEEEeCCc------EEEEECCCCCcHHHHHHHHhCCCC--CCccEEEE
Q 007178 296 NLRKIYPGRDGNPEKVAVNGLSLALPSGE------CFGMLGPNGAGKTTFISMMIGITR--TTSGTAYV 356 (614)
Q Consensus 296 ~l~k~y~~~~~~~~~~~l~~isl~i~~Ge------i~~LlG~NGaGKTTll~~l~Gl~~--p~sG~i~i 356 (614)
.+++.|+ ++.++++++..+.+++ ++||+||||||||||+++|.|++. |++|.+.+
T Consensus 65 ll~~~~~------~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~ 127 (321)
T 3tqc_A 65 LLSFYVT------ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEV 127 (321)
T ss_dssp HHHHHHH------HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred HHHHhhc------chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEE
Confidence 4455565 3678899999998887 999999999999999999999987 45666544
No 197
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.90 E-value=4.7e-06 Score=80.91 Aligned_cols=29 Identities=28% Similarity=0.357 Sum_probs=27.6
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCCC
Q 007178 321 PSGECFGMLGPNGAGKTTFISMMIGITRT 349 (614)
Q Consensus 321 ~~Gei~~LlG~NGaGKTTll~~l~Gl~~p 349 (614)
++|++++|+|||||||||++++|++.++|
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999887
No 198
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.90 E-value=4.1e-06 Score=80.96 Aligned_cols=32 Identities=13% Similarity=0.384 Sum_probs=26.8
Q ss_pred eEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC
Q 007178 317 SLALPSGECFGMLGPNGAGKTTFISMMIGITR 348 (614)
Q Consensus 317 sl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~ 348 (614)
|+...+|++++|+||||||||||++.|.+..+
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34556899999999999999999999998875
No 199
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.89 E-value=4.8e-06 Score=87.28 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=26.0
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCCCC
Q 007178 321 PSGECFGMLGPNGAGKTTFISMMIGITRTT 350 (614)
Q Consensus 321 ~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~ 350 (614)
.++..+.|.||+|+|||||++.+++...+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 457789999999999999999999877553
No 200
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.88 E-value=9e-07 Score=86.51 Aligned_cols=57 Identities=23% Similarity=0.325 Sum_probs=46.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCC---CCCccEEEE--------cCeeCCC--cHHHhhcceEEEcCCC
Q 007178 323 GECFGMLGPNGAGKTTFISMMIGIT---RTTSGTAYV--------QGLDIRT--DMDRIYTSMGVCPQED 379 (614)
Q Consensus 323 Gei~~LlG~NGaGKTTll~~l~Gl~---~p~sG~i~i--------~G~~i~~--~~~~~~~~ig~~~Q~~ 379 (614)
+.+++|+||+||||||+.++|++.+ .+++|++.. .|.++.. ....+++.+|+.+|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 5789999999999999999999765 788999887 6777643 2345677899998864
No 201
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.84 E-value=1.7e-06 Score=90.87 Aligned_cols=65 Identities=18% Similarity=0.154 Sum_probs=55.3
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCC
Q 007178 292 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR 362 (614)
Q Consensus 292 i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~ 362 (614)
++.+++.+.|+ .+.+++++++.+.+|.+++++|+||||||||++.|+|.+.+..|++.+-+.|..
T Consensus 31 ie~~~~~~~~~------~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 31 VESRHPRHQAL------STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp HHCCCHHHHHH------HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred hhcCCchhhhH------HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 44556666665 356899999999999999999999999999999999999998899888776654
No 202
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.77 E-value=1.3e-05 Score=77.37 Aligned_cols=33 Identities=21% Similarity=0.146 Sum_probs=29.2
Q ss_pred eeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC
Q 007178 316 LSLALPSGECFGMLGPNGAGKTTFISMMIGITR 348 (614)
Q Consensus 316 isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~ 348 (614)
+--++++|++++|.|++||||||+.++|++.++
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 334678899999999999999999999999874
No 203
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.72 E-value=4.9e-06 Score=90.35 Aligned_cols=42 Identities=10% Similarity=0.315 Sum_probs=35.0
Q ss_pred CCCCEEEEeCCCCCCCH-HHHHHHHHHHHHh-cCCceEEEEcCC
Q 007178 447 GNPKVVYMDEPSTGLDP-ASRNNLWNVVKRA-KQGRAIILTTHS 488 (614)
Q Consensus 447 ~~p~vllLDEPtsgLD~-~~~~~i~~~l~~~-~~g~tIil~TH~ 488 (614)
.+|++|++||+..-.+. ..++.+...+... ..|+.||++||+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 48999999999876654 6788888988875 568899999997
No 204
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.70 E-value=4.2e-06 Score=93.32 Aligned_cols=59 Identities=22% Similarity=0.327 Sum_probs=49.1
Q ss_pred EeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCee
Q 007178 295 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD 360 (614)
Q Consensus 295 ~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~ 360 (614)
+++.+.|+ +..+++++++++ +|++++|+||||+|||||+++|++...+..|+|.+.|..
T Consensus 87 ~~vk~~i~------~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~ 145 (543)
T 3m6a_A 87 EKVKERIL------EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVR 145 (543)
T ss_dssp HHHHHHHH------HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--
T ss_pred HHHHHHHH------HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccc
Confidence 45556664 356888888888 899999999999999999999999999999999888743
No 205
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.69 E-value=2.7e-05 Score=80.95 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=25.6
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 007178 319 ALPSGECFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 319 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl 346 (614)
.+++|+++.|.||+|+||||+...++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 6899999999999999999999888764
No 206
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.67 E-value=0.00031 Score=75.64 Aligned_cols=59 Identities=17% Similarity=0.219 Sum_probs=49.9
Q ss_pred EeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC
Q 007178 295 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT 363 (614)
Q Consensus 295 ~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~ 363 (614)
+++++.|++. . ++++++ +|++++++|+||+||||+...|++.+.+..|+|.+.+.|+..
T Consensus 80 ~~L~~~~~~~------~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 80 EALKEALGGE------A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (425)
T ss_dssp HHHHHHTTSS------C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred HHHHHHhCCC------c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence 3566777631 1 677887 899999999999999999999999999999999999888754
No 207
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.66 E-value=0.00012 Score=74.36 Aligned_cols=59 Identities=14% Similarity=0.191 Sum_probs=39.1
Q ss_pred ChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHhc-----CCceEEEEcCCHH
Q 007178 432 SGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA----------SRNNLWNVVKRAK-----QGRAIILTTHSME 490 (614)
Q Consensus 432 SgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~----------~~~~i~~~l~~~~-----~g~tIil~TH~~~ 490 (614)
+++++.|..++.|...+|.+|++||+.+..+.. ....+...+.... .+..||.+|++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~ 170 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence 356777778888888999999999997765532 2223444444321 2356788888764
No 208
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.63 E-value=0.00022 Score=73.18 Aligned_cols=60 Identities=20% Similarity=0.236 Sum_probs=48.6
Q ss_pred EeEEEEcCCCCCCCccceeee-eeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCC
Q 007178 295 DNLRKIYPGRDGNPEKVAVNG-LSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT 363 (614)
Q Consensus 295 ~~l~k~y~~~~~~~~~~~l~~-isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~ 363 (614)
+++.+.|++. . ++ ++++.+ |++++++|+||+||||++..|++.+.+..|+|.+.+.|+..
T Consensus 78 ~~l~~~~~~~-----~---~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 78 DELSNLFGGD-----K---EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp HHHHHHTTCS-----C---CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred HHHHHHhccc-----c---ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 4566667531 1 45 778876 99999999999999999999999999888999988877643
No 209
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.61 E-value=4.7e-05 Score=79.81 Aligned_cols=28 Identities=18% Similarity=0.131 Sum_probs=25.9
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 007178 319 ALPSGECFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 319 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl 346 (614)
.+++|+++.|.||+|+||||+...++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999999988874
No 210
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.61 E-value=0.00024 Score=69.89 Aligned_cols=41 Identities=12% Similarity=0.147 Sum_probs=31.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc---CCceEEEEcC
Q 007178 447 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK---QGRAIILTTH 487 (614)
Q Consensus 447 ~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~---~g~tIil~TH 487 (614)
.+|+++|+..+.+.++....+.+..+.+... ...++|+.||
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 4799999999988999877777766665432 2358888888
No 211
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.52 E-value=3e-05 Score=72.22 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=27.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcC
Q 007178 322 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG 358 (614)
Q Consensus 322 ~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G 358 (614)
.|++++|+|||||||||+.++|++.+.+ ..+++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4789999999999999999999998754 55554
No 212
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.51 E-value=4.5e-05 Score=82.65 Aligned_cols=145 Identities=9% Similarity=0.038 Sum_probs=72.3
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCCC------------CCccEEEEcCeeCCC-cHHHhhcceEEEcCCCCCCCCCCHHHH
Q 007178 324 ECFGMLGPNGAGKTTFISMMIGITR------------TTSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREH 390 (614)
Q Consensus 324 ei~~LlG~NGaGKTTll~~l~Gl~~------------p~sG~i~i~G~~i~~-~~~~~~~~ig~~~Q~~~l~~~lTv~e~ 390 (614)
-.++|+|+||+|||||++.|+|... |.+|.+.++|+++.- +....++..++.+|....+..++..++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 3789999999999999999999864 678999999986521 122223344555565555555555555
Q ss_pred HHHHhh-------hcCCCchhHHHHHHHHHHHcCCCC---CCcccccCC-CCChhHHHHHHHHHHH--hCCCCEEEEeCC
Q 007178 391 LLFYGR-------LKNLKGPALTQAVEESLKSVNLFH---GGVADKQAG-KYSGGMKRRLSVAISL--IGNPKVVYMDEP 457 (614)
Q Consensus 391 l~~~~~-------~~~~~~~~~~~~~~~~l~~~~L~~---~~~~~~~~~-~LSgG~kqrl~ia~al--~~~p~vllLDEP 457 (614)
+...-. ..+.. ....++.+.++..+..- ..+.|..-. .-+.-+ -+-.++..+ ....+++ +
T Consensus 261 i~~ad~vllv~d~~~~~~--~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~ 333 (439)
T 1mky_A 261 IEKADVVVIVLDATQGIT--RQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDE-FTKLFREKLYFIDYSPLI----F 333 (439)
T ss_dssp HHHCSEEEEEEETTTCCC--HHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHH-HHHHHHHHCGGGTTSCEE----E
T ss_pred HhhCCEEEEEEeCCCCCC--HHHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHH-HHHHHHHHhccCCCCcEE----E
Confidence 543210 01111 22234555555554310 011222110 001111 011233333 3444544 4
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 007178 458 STGLDPASRNNLWNVVKR 475 (614)
Q Consensus 458 tsgLD~~~~~~i~~~l~~ 475 (614)
+|+++-....++.+.+.+
T Consensus 334 ~SA~~g~gv~~l~~~i~~ 351 (439)
T 1mky_A 334 TSADKGWNIDRMIDAMNL 351 (439)
T ss_dssp CBTTTTBSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 888887777777777765
No 213
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.49 E-value=5.4e-05 Score=69.61 Aligned_cols=30 Identities=20% Similarity=0.465 Sum_probs=24.6
Q ss_pred eeeEEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 007178 315 GLSLALPSGECFGMLGPNGAGKTTFISMMIG 345 (614)
Q Consensus 315 ~isl~i~~Gei~~LlG~NGaGKTTll~~l~G 345 (614)
+.++++.+| +++|+|||||||||++.+|.-
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 345566654 999999999999999999873
No 214
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.48 E-value=2.2e-05 Score=73.91 Aligned_cols=40 Identities=28% Similarity=0.263 Sum_probs=32.6
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCCCCcc--EEEEcCeeC
Q 007178 321 PSGECFGMLGPNGAGKTTFISMMIGITRTTSG--TAYVQGLDI 361 (614)
Q Consensus 321 ~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG--~i~i~G~~i 361 (614)
.+|++++|.|++||||||+.++|++.+++ .| .+.++|..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 47999999999999999999999998866 56 666665443
No 215
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.40 E-value=7.6e-05 Score=86.99 Aligned_cols=32 Identities=22% Similarity=0.340 Sum_probs=29.0
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC
Q 007178 318 LALPSGECFGMLGPNGAGKTTFISMMIGITRT 349 (614)
Q Consensus 318 l~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p 349 (614)
+.+++|+.+.|.||||+|||||+++|+|...+
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 46889999999999999999999999998753
No 216
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.38 E-value=0.00034 Score=71.67 Aligned_cols=30 Identities=20% Similarity=0.375 Sum_probs=26.5
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHhCCC
Q 007178 318 LALPSGECFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 318 l~i~~Gei~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
+.+.++..+.|.||+|+||||+.++|++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 346778899999999999999999999865
No 217
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.36 E-value=0.00018 Score=73.38 Aligned_cols=31 Identities=29% Similarity=0.442 Sum_probs=27.4
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCCCCCccEE
Q 007178 324 ECFGMLGPNGAGKTTFISMMIGITRTTSGTA 354 (614)
Q Consensus 324 ei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i 354 (614)
..+.|.||+|+||||+.++|++...++.|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 6899999999999999999999887776644
No 218
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.33 E-value=7.1e-05 Score=73.89 Aligned_cols=46 Identities=22% Similarity=0.254 Sum_probs=32.4
Q ss_pred ceeeeeeEEEe---CCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEc
Q 007178 311 VAVNGLSLALP---SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQ 357 (614)
Q Consensus 311 ~~l~~isl~i~---~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~ 357 (614)
.-|.+.|+.+. +|.+++|.|++||||||+++.|+..+.+ .+.+...
T Consensus 11 ~~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 11 VDLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp ---------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred cCccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 35667777776 8999999999999999999999999887 6666543
No 219
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.31 E-value=0.0007 Score=71.25 Aligned_cols=36 Identities=28% Similarity=0.446 Sum_probs=28.4
Q ss_pred ceeeeee--EEEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 007178 311 VAVNGLS--LALPSGECFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 311 ~~l~~is--l~i~~Gei~~LlG~NGaGKTTll~~l~Gl 346 (614)
..||.+- =-+++|+++.|.|++|+|||||...++..
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3455542 14889999999999999999999777654
No 220
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.28 E-value=2.4e-05 Score=79.07 Aligned_cols=45 Identities=9% Similarity=0.061 Sum_probs=36.9
Q ss_pred CCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHhhCCEEEE
Q 007178 457 PSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGI 501 (614)
Q Consensus 457 PtsgLD~~~~~~i~~~l~~~-~-~g~tIil~TH~~~e~~~l~dri~i 501 (614)
|||+.+.....++++.+.+. . ++.+..+.+|..+++++.++++.-
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~ 190 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREIKHISE 190 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCHHHHHHHHHHHH
Confidence 99999999999999998764 3 355667788999999998888643
No 221
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.26 E-value=3.9e-05 Score=74.30 Aligned_cols=43 Identities=16% Similarity=0.132 Sum_probs=37.1
Q ss_pred EEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcc--EEEEcCee
Q 007178 318 LALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG--TAYVQGLD 360 (614)
Q Consensus 318 l~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG--~i~i~G~~ 360 (614)
+.+++|.+++|.|++||||||+.+.|++.+.|+.| .+.++|.+
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 34568999999999999999999999999988888 78877543
No 222
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.25 E-value=4.5e-06 Score=86.92 Aligned_cols=43 Identities=12% Similarity=0.183 Sum_probs=34.0
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHH
Q 007178 447 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSME 490 (614)
Q Consensus 447 ~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~ 490 (614)
.+++++++|| ...+++..+..+.+.+.+..++..+|++|++.+
T Consensus 132 ~~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~ 174 (353)
T 1sxj_D 132 PPYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVT 174 (353)
T ss_dssp CSCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CCceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchh
Confidence 3678999999 788999999999998887655556666776654
No 223
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.23 E-value=4.4e-05 Score=80.67 Aligned_cols=52 Identities=19% Similarity=0.307 Sum_probs=46.7
Q ss_pred eEEEEeEEEEcCCCCCCCccceee--------------eeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCC
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVN--------------GLSLALPSGECFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~--------------~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
.+.++|++..|+. ++..++ |+++.+.+||..+|+||+|+|||||++.|++..
T Consensus 133 ri~Fe~ltp~yP~-----er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHAN-----SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCC-----SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCC-----CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 4778899999985 366888 899999999999999999999999999998865
No 224
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.22 E-value=7.5e-05 Score=71.35 Aligned_cols=35 Identities=31% Similarity=0.452 Sum_probs=31.3
Q ss_pred cceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 007178 310 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG 345 (614)
Q Consensus 310 ~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~G 345 (614)
..+++++|+..++++ ++++|++|+|||||++.+++
T Consensus 13 ~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 13 SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhc
Confidence 468999999988885 68999999999999999987
No 225
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.21 E-value=0.00017 Score=74.67 Aligned_cols=131 Identities=13% Similarity=0.206 Sum_probs=80.5
Q ss_pred cceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHH
Q 007178 310 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 389 (614)
Q Consensus 310 ~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e 389 (614)
...|+++.-.+++|+++.|.|+.|+||||+...++....- .| ..+.|+.= .++..+
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g-----------------~~vl~~sl------E~s~~~ 110 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND-----------------DVVNLHSL------EMGKKE 110 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT-----------------CEEEEEES------SSCHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC-----------------CeEEEEEC------CCCHHH
Confidence 4578888877999999999999999999998877642211 11 12334321 144444
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHH
Q 007178 390 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 469 (614)
Q Consensus 390 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPtsgLD~~~~~~i 469 (614)
... ++......+++. .+.+.. ..||.++++|+.-|...+.++++.+.|+|... ..++
T Consensus 111 l~~---------------R~~~~~~~i~~~--~l~~~~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~~~i 167 (315)
T 3bh0_A 111 NIK---------------RLIVTAGSINAQ--KIKAAR-RDFASEDWGKLSMAIGEISNSNINIFDKAGQS-----VNYI 167 (315)
T ss_dssp HHH---------------HHHHHHTTCCHH--HHHSCH-HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----HHHH
T ss_pred HHH---------------HHHHHHcCCCHH--HHhcCC-CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----HHHH
Confidence 221 222211122221 111111 23899999999999999989999999998643 3345
Q ss_pred HHHHHHh-c-CCce--EEEEcC
Q 007178 470 WNVVKRA-K-QGRA--IILTTH 487 (614)
Q Consensus 470 ~~~l~~~-~-~g~t--Iil~TH 487 (614)
.+.++++ + .|.. +|++-|
T Consensus 168 ~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 168 WSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HHHHHHHHHTSSSCCEEEEEEC
T ss_pred HHHHHHHHHhcCCCCeEEEEeC
Confidence 5555543 2 3555 777755
No 226
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.19 E-value=0.00021 Score=67.63 Aligned_cols=34 Identities=32% Similarity=0.405 Sum_probs=20.4
Q ss_pred ceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 007178 311 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG 345 (614)
Q Consensus 311 ~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~G 345 (614)
.+++++++..++. .++++|++|+|||||++.+++
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 4889999998887 568999999999999999987
No 227
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.19 E-value=0.00014 Score=71.64 Aligned_cols=147 Identities=15% Similarity=0.068 Sum_probs=74.5
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhc
Q 007178 319 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK 398 (614)
Q Consensus 319 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i~~~~~~~~~~ig~~~Q~~~l~~~lTv~e~l~~~~~~~ 398 (614)
.+.+|+.+.+.||+||||||++..+........|. ...++++.+.+......++.+++.-..
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~---------------~~~~~~l~~~p~~~la~q~~~~~~~~~--- 133 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR---------------AAECNIVVTQPRRISAVSVAERVAFER--- 133 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC---------------GGGCEEEEEESSHHHHHHHHHHHHHTT---
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC---------------CCceEEEEeccchHHHHHHHHHHHHHh---
Confidence 44679999999999999999988764321111110 123456666554333334444443211
Q ss_pred CCCchhHHHHHHHHHHHcCCC--CCCc---ccccCCCCChhHHHHHHHHHHHhCCCCEEEEeCCCC-CCCHHHHHHHHHH
Q 007178 399 NLKGPALTQAVEESLKSVNLF--HGGV---ADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPST-GLDPASRNNLWNV 472 (614)
Q Consensus 399 ~~~~~~~~~~~~~~l~~~~L~--~~~~---~~~~~~~LSgG~kqrl~ia~al~~~p~vllLDEPts-gLD~~~~~~i~~~ 472 (614)
+..- -..+|.. .... .+..+--.+.|...+. ....+.+-+++++||.-. ++|........+.
T Consensus 134 ~~~~----------~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~--l~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~ 201 (235)
T 3llm_A 134 GEEP----------GKSCGYSVRFESILPRPHASIMFCTVGVLLRK--LEAGIRGISHVIVDEIHERDINTDFLLVVLRD 201 (235)
T ss_dssp TCCT----------TSSEEEEETTEEECCCSSSEEEEEEHHHHHHH--HHHCCTTCCEEEECCTTSCCHHHHHHHHHHHH
T ss_pred cccc----------CceEEEeechhhccCCCCCeEEEECHHHHHHH--HHhhhcCCcEEEEECCccCCcchHHHHHHHHH
Confidence 1000 0001100 0000 0011111345655444 344688999999999966 6877766444444
Q ss_pred HHHh-cCCceEEEE-cCCHHHHHhh
Q 007178 473 VKRA-KQGRAIILT-THSMEEAEAL 495 (614)
Q Consensus 473 l~~~-~~g~tIil~-TH~~~e~~~l 495 (614)
+... .+-++++++ |.+.+...++
T Consensus 202 i~~~~~~~~~il~SAT~~~~~~~~~ 226 (235)
T 3llm_A 202 VVQAYPEVRIVLMSATIDTSMFCEY 226 (235)
T ss_dssp HHHHCTTSEEEEEECSSCCHHHHHH
T ss_pred HHhhCCCCeEEEEecCCCHHHHHHH
Confidence 4443 333445444 5554444433
No 228
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.12 E-value=4.9e-05 Score=80.33 Aligned_cols=56 Identities=20% Similarity=0.189 Sum_probs=37.2
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcC
Q 007178 291 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG 358 (614)
Q Consensus 291 ~i~~~~l~k~y~~~~~~~~~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G 358 (614)
.+.++|+++.|++ +.+.++++|+| +++|+||+|||||++.|.|...+..|.+...+
T Consensus 17 ~v~~~~l~~~~~~------k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 17 YVGFANLPNQVHR------KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp ----CCHHHHHHT------HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred eEEeccchHHhCC------eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 4778888888863 56889999988 99999999999999999998766666554444
No 229
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.12 E-value=0.00032 Score=65.34 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=23.4
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCC
Q 007178 321 PSGECFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 321 ~~Gei~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
++|..++|+|++|+|||||++.++|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367889999999999999999999865
No 230
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.11 E-value=0.00032 Score=67.61 Aligned_cols=43 Identities=26% Similarity=0.293 Sum_probs=33.7
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHH
Q 007178 447 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSME 490 (614)
Q Consensus 447 ~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~ 490 (614)
++|.++++||.-. +|+.....+.+.+.+...+..+|++|++.+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 5688999999765 788888888777765555778899998754
No 231
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.10 E-value=0.00025 Score=68.56 Aligned_cols=29 Identities=17% Similarity=0.434 Sum_probs=24.0
Q ss_pred eeeEEEeCCcEEEEECCCCCcHHHHHHHHh
Q 007178 315 GLSLALPSGECFGMLGPNGAGKTTFISMMI 344 (614)
Q Consensus 315 ~isl~i~~Gei~~LlG~NGaGKTTll~~l~ 344 (614)
+.++++.+ .+++|+|||||||||++.+|.
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 44566665 499999999999999999885
No 232
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.04 E-value=0.00061 Score=73.81 Aligned_cols=172 Identities=13% Similarity=0.048 Sum_probs=91.4
Q ss_pred cceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCcc-EE-EEcCeeCCCcHHHhhcc-e---EEEcCCCCCCC
Q 007178 310 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG-TA-YVQGLDIRTDMDRIYTS-M---GVCPQEDLLWE 383 (614)
Q Consensus 310 ~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG-~i-~i~G~~i~~~~~~~~~~-i---g~~~Q~~~l~~ 383 (614)
...|+.+.-.+++|+++.|.|++|+||||+..-++.......| .| ++..+ . ...++.++ + +-++.+...-.
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE-~--~~~~l~~R~~~~~~~i~~~~l~~g 263 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE-M--PAAQLTLRMMCSEARIDMNRVRLG 263 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS-S--CHHHHHHHHHHHHTTCCTTTCCGG
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC-C--CHHHHHHHHHHHHcCCCHHHHhCC
Confidence 4567777767999999999999999999999887765433223 23 33322 1 11111111 0 00111100000
Q ss_pred CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHh--CCCCEEEEeCCCCCC
Q 007178 384 TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI--GNPKVVYMDEPSTGL 461 (614)
Q Consensus 384 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~--~~p~vllLDEPtsgL 461 (614)
. +..+ ..+++.+.++.+.-. ...-.....+|..+.+ +.++.+. .+++++++|..+.-.
T Consensus 264 ~---------------l~~~-~~~~~~~a~~~l~~~--~l~i~d~~~~s~~~l~--~~~~~l~~~~~~~lIvID~l~~~~ 323 (444)
T 2q6t_A 264 Q---------------LTDR-DFSRLVDVASRLSEA--PIYIDDTPDLTLMEVR--ARARRLVSQNQVGLIIIDYLQLMS 323 (444)
T ss_dssp G---------------CCHH-HHHHHHHHHHHHHTS--CEEEECCTTCBHHHHH--HHHHHHHHHSCCCEEEEECGGGCB
T ss_pred C---------------CCHH-HHHHHHHHHHHHhcC--CEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEcChhhcC
Confidence 1 1111 122333333333211 1111223456766653 3445554 689999999986543
Q ss_pred CH------HHH----HHHHHHHHHh-cC-CceEEEEcCCHH-------------------HHHhhCCEEEEEeC
Q 007178 462 DP------ASR----NNLWNVVKRA-KQ-GRAIILTTHSME-------------------EAEALCDRLGIFVD 504 (614)
Q Consensus 462 D~------~~~----~~i~~~l~~~-~~-g~tIil~TH~~~-------------------e~~~l~dri~il~~ 504 (614)
++ .++ .++...|+.+ ++ |.+||+++|--. .++..||.|+.|..
T Consensus 324 ~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 324 GPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp CC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred CCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence 32 122 2344445553 33 899999998311 24667888888753
No 233
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.00 E-value=0.00018 Score=67.99 Aligned_cols=37 Identities=19% Similarity=0.263 Sum_probs=32.1
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEE
Q 007178 319 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 355 (614)
Q Consensus 319 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~ 355 (614)
...+|.+++|.|++||||||+.+.|++.+.+..|.+.
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~ 45 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVE 45 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 4457999999999999999999999998887777664
No 234
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.95 E-value=0.00012 Score=70.18 Aligned_cols=35 Identities=17% Similarity=0.389 Sum_probs=28.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeC
Q 007178 323 GECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI 361 (614)
Q Consensus 323 Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i 361 (614)
..+++|.|++||||||+.+.|++.+ |...+++.++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence 5689999999999999999998865 5556665444
No 235
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.95 E-value=0.00038 Score=74.14 Aligned_cols=41 Identities=17% Similarity=0.283 Sum_probs=34.1
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhCC-----------CCCCccEEEEcCe
Q 007178 319 ALPSGECFGMLGPNGAGKTTFISMMIGI-----------TRTTSGTAYVQGL 359 (614)
Q Consensus 319 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl-----------~~p~sG~i~i~G~ 359 (614)
.+..|..++|+|+||+|||||++.|+|. ..|+.|.+.+.|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4567888999999999999999999998 6788898887764
No 236
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.94 E-value=0.00076 Score=62.02 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=22.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGITRT 349 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~~p 349 (614)
.++|+|++|+|||||++.++|...+
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~~ 29 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENVY 29 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCee
Confidence 5899999999999999999997543
No 237
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.92 E-value=0.0005 Score=64.20 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
.++++|++|+|||||++.++|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999985
No 238
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.87 E-value=0.0011 Score=63.26 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=22.5
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCCCC
Q 007178 324 ECFGMLGPNGAGKTTFISMMIGITRT 349 (614)
Q Consensus 324 ei~~LlG~NGaGKTTll~~l~Gl~~p 349 (614)
..+.|.||+|+|||||++.|+.....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 67889999999999999999876543
No 239
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.84 E-value=0.001 Score=69.40 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=23.8
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCC
Q 007178 321 PSGECFGMLGPNGAGKTTFISMMIGITR 348 (614)
Q Consensus 321 ~~Gei~~LlG~NGaGKTTll~~l~Gl~~ 348 (614)
..+..+.|.||.|+||||+++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 3466889999999999999999987653
No 240
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.84 E-value=0.0011 Score=70.17 Aligned_cols=32 Identities=19% Similarity=0.469 Sum_probs=27.6
Q ss_pred eeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHh
Q 007178 312 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMI 344 (614)
Q Consensus 312 ~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~ 344 (614)
.+++..+++.+| +++|.|||||||||++..|.
T Consensus 15 ~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 15 SHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp TEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred cccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 446778888775 99999999999999999886
No 241
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.81 E-value=0.0007 Score=69.76 Aligned_cols=41 Identities=10% Similarity=0.220 Sum_probs=29.7
Q ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHHHHHh-cCCceEEEEcC
Q 007178 447 GNPKVVYMDEPST-GLDPASRNNLWNVVKRA-KQGRAIILTTH 487 (614)
Q Consensus 447 ~~p~vllLDEPts-gLD~~~~~~i~~~l~~~-~~g~tIil~TH 487 (614)
.++++|++||+-. .-|+..++.+...+... ..|+.+|++|+
T Consensus 97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~ 139 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASD 139 (324)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 4699999999854 33557788888888774 45666666655
No 242
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.73 E-value=0.00057 Score=65.31 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 007178 325 CFGMLGPNGAGKTTFISMMIG 345 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~G 345 (614)
+++|.|+|||||||+.++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 243
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.71 E-value=0.00089 Score=64.92 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=23.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCC
Q 007178 322 SGECFGMLGPNGAGKTTFISMMIGITR 348 (614)
Q Consensus 322 ~Gei~~LlG~NGaGKTTll~~l~Gl~~ 348 (614)
++..+.|.||+|+||||+++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999987554
No 244
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.70 E-value=0.00077 Score=63.66 Aligned_cols=32 Identities=28% Similarity=0.383 Sum_probs=26.4
Q ss_pred eeeEEEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 007178 315 GLSLALPSGECFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 315 ~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl 346 (614)
++|++..+|.+++|+|+.||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46888889999999999999999999999865
No 245
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.60 E-value=0.021 Score=61.56 Aligned_cols=34 Identities=21% Similarity=0.207 Sum_probs=27.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEE
Q 007178 322 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 355 (614)
Q Consensus 322 ~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~ 355 (614)
++.+++++|++|+||||+..-|+..+....-+|.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVl 132 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVG 132 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 5789999999999999999999987765333443
No 246
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.59 E-value=0.00091 Score=64.19 Aligned_cols=30 Identities=23% Similarity=0.329 Sum_probs=26.1
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhCCCC
Q 007178 319 ALPSGECFGMLGPNGAGKTTFISMMIGITR 348 (614)
Q Consensus 319 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~ 348 (614)
...+|.+++|+||+||||||+.+.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 456899999999999999999999988663
No 247
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.53 E-value=0.00086 Score=63.29 Aligned_cols=38 Identities=21% Similarity=0.193 Sum_probs=29.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEEcCee
Q 007178 323 GECFGMLGPNGAGKTTFISMMIGITRTT---SGTAYVQGLD 360 (614)
Q Consensus 323 Gei~~LlG~NGaGKTTll~~l~Gl~~p~---sG~i~i~G~~ 360 (614)
-.+++|.|++|||||||++.|.+.+++. -|.+..++++
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 3689999999999999999999876543 3666665543
No 248
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.52 E-value=0.0043 Score=62.28 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=23.9
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhCCC
Q 007178 320 LPSGECFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 320 i~~Gei~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
+.++..+.|.||.|+||||+.+.++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3456679999999999999999998754
No 249
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.50 E-value=0.0013 Score=61.70 Aligned_cols=26 Identities=23% Similarity=0.521 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGITRTT 350 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~~p~ 350 (614)
-++|+|++|+|||||++.++|...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 47899999999999999999975443
No 250
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.50 E-value=0.00035 Score=73.22 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=34.0
Q ss_pred ceeeeeeEEEeCCcE--EEEECCCCCcHHHHHHHHhCCCC
Q 007178 311 VAVNGLSLALPSGEC--FGMLGPNGAGKTTFISMMIGITR 348 (614)
Q Consensus 311 ~~l~~isl~i~~Gei--~~LlG~NGaGKTTll~~l~Gl~~ 348 (614)
.+++++++.+++|++ ++|+|++||||||+.++|++.+.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 478888889999998 99999999999999999998653
No 251
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.43 E-value=0.00072 Score=66.50 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=23.9
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhCC
Q 007178 320 LPSGECFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 320 i~~Gei~~LlG~NGaGKTTll~~l~Gl 346 (614)
-.+|.+++|+|++||||||+.++|++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999999863
No 252
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.41 E-value=0.00076 Score=63.28 Aligned_cols=25 Identities=40% Similarity=0.533 Sum_probs=22.3
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhC
Q 007178 321 PSGECFGMLGPNGAGKTTFISMMIG 345 (614)
Q Consensus 321 ~~Gei~~LlG~NGaGKTTll~~l~G 345 (614)
.+|.+++|.|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999984
No 253
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.33 E-value=0.0012 Score=65.86 Aligned_cols=41 Identities=20% Similarity=0.180 Sum_probs=33.2
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeC
Q 007178 319 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI 361 (614)
Q Consensus 319 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i 361 (614)
...++.++.|.|++||||||+.+.|+..+. .|.+.++|..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 456788999999999999999999998764 35677777544
No 254
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.30 E-value=0.0099 Score=53.67 Aligned_cols=44 Identities=11% Similarity=0.146 Sum_probs=29.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceE-EEEcCCHHHH
Q 007178 448 NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAI-ILTTHSMEEA 492 (614)
Q Consensus 448 ~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tI-il~TH~~~e~ 492 (614)
+..+|++||. ..|++..+..+.+.+.....+..+ ..++.++++.
T Consensus 76 ~~g~l~ldei-~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~~~~~ 120 (145)
T 3n70_A 76 QGGTLVLSHP-EHLTREQQYHLVQLQSQEHRPFRLIGIGDTSLVEL 120 (145)
T ss_dssp TTSCEEEECG-GGSCHHHHHHHHHHHHSSSCSSCEEEEESSCHHHH
T ss_pred CCcEEEEcCh-HHCCHHHHHHHHHHHhhcCCCEEEEEECCcCHHHH
Confidence 3467999998 468898888888888554444444 4444555543
No 255
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.24 E-value=0.0018 Score=64.34 Aligned_cols=45 Identities=29% Similarity=0.481 Sum_probs=28.8
Q ss_pred eeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCee
Q 007178 312 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD 360 (614)
Q Consensus 312 ~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~ 360 (614)
.+++++...++| +.|.||+|+||||+.+.|++..... -+.+++.+
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~ 80 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSD 80 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHH
Confidence 344445555555 8899999999999999999876421 35555443
No 256
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.22 E-value=0.016 Score=61.06 Aligned_cols=27 Identities=30% Similarity=0.635 Sum_probs=24.0
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhC
Q 007178 319 ALPSGECFGMLGPNGAGKTTFISMMIG 345 (614)
Q Consensus 319 ~i~~Gei~~LlG~NGaGKTTll~~l~G 345 (614)
-+++|+++.|.||.|+|||||...++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 589999999999999999999866653
No 257
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.02 E-value=0.0042 Score=65.43 Aligned_cols=36 Identities=19% Similarity=0.357 Sum_probs=30.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHhC-----------CCCCCccEEEEcC
Q 007178 323 GECFGMLGPNGAGKTTFISMMIG-----------ITRTTSGTAYVQG 358 (614)
Q Consensus 323 Gei~~LlG~NGaGKTTll~~l~G-----------l~~p~sG~i~i~G 358 (614)
|-.++|+|.+|+|||||++.|+| ...|+.|.+.+.|
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 35689999999999999999998 4567888888766
No 258
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.95 E-value=0.0098 Score=58.30 Aligned_cols=52 Identities=17% Similarity=0.294 Sum_probs=37.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCC----------HHHHHhhCCEEEEEe
Q 007178 447 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHS----------MEEAEALCDRLGIFV 503 (614)
Q Consensus 447 ~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~----------~~e~~~l~dri~il~ 503 (614)
.+++++++||--. +++. ..+.++.+ +.|..||++.|+ ..++..+||+|.-|+
T Consensus 88 ~~~dvViIDEaQ~-l~~~----~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 88 DETKVIGIDEVQF-FDDR----ICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TTCCEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCCEEEEecCcc-CcHH----HHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 4589999999854 6654 33344442 358999999992 456677999998775
No 259
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.95 E-value=0.0003 Score=69.13 Aligned_cols=43 Identities=19% Similarity=0.337 Sum_probs=28.7
Q ss_pred HhCCCCEEEEeCCCCC-CCHHHHHHHHHHHHH-hcCCceEEEEcC
Q 007178 445 LIGNPKVVYMDEPSTG-LDPASRNNLWNVVKR-AKQGRAIILTTH 487 (614)
Q Consensus 445 l~~~p~vllLDEPtsg-LD~~~~~~i~~~l~~-~~~g~tIil~TH 487 (614)
+..+|+++|+||+-.- .+.......|+.+.. +..|..++.|+|
T Consensus 81 L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 81 LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 3358999999997632 332223345555544 467889999998
No 260
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.91 E-value=0.0025 Score=67.67 Aligned_cols=47 Identities=17% Similarity=0.214 Sum_probs=38.6
Q ss_pred CCCCEEEEeCCCCCC---CHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHH
Q 007178 447 GNPKVVYMDEPSTGL---DPASRNNLWNVVKRAK-QGRAIILTTHSMEEAE 493 (614)
Q Consensus 447 ~~p~vllLDEPtsgL---D~~~~~~i~~~l~~~~-~g~tIil~TH~~~e~~ 493 (614)
..|.++++||-=.=+ +|...+.+.+.+++.+ .|..++++||+++++.
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~ 311 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFL 311 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGG
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhh
Confidence 568999999987666 4778888888888864 5999999999998653
No 261
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.89 E-value=0.0018 Score=64.03 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=21.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCC
Q 007178 322 SGECFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 322 ~Gei~~LlG~NGaGKTTll~~l~Gl 346 (614)
+.-+++|.||+||||||+.+.|+..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999843
No 262
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.83 E-value=0.02 Score=59.86 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCC
Q 007178 322 SGECFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 322 ~Gei~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
+...+.|.||.|+||||+.+.|+...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 45678999999999999999998654
No 263
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.80 E-value=0.0083 Score=56.17 Aligned_cols=28 Identities=21% Similarity=0.510 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHh-CC----CCCCcc
Q 007178 325 CFGMLGPNGAGKTTFISMMI-GI----TRTTSG 352 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~-Gl----~~p~sG 352 (614)
-++++|+.|+|||||++.++ |. ..|+.|
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~ 54 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG 54 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc
Confidence 47899999999999996554 43 456655
No 264
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.77 E-value=0.033 Score=52.49 Aligned_cols=42 Identities=17% Similarity=0.318 Sum_probs=31.7
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCH
Q 007178 447 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSM 489 (614)
Q Consensus 447 ~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~ 489 (614)
.++.++++||. ..+++.....+.+.+.+...+..+|++|+..
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~ 142 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMYSKSCRFILSCNYV 142 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence 46889999995 4577777777888777655566778887765
No 265
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.76 E-value=0.0049 Score=57.44 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
.++++|++|+|||||++.+++-
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999986
No 266
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.75 E-value=0.0049 Score=56.56 Aligned_cols=23 Identities=17% Similarity=0.101 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
+++|.|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 267
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.74 E-value=0.041 Score=58.86 Aligned_cols=28 Identities=36% Similarity=0.423 Sum_probs=24.0
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 007178 319 ALPSGECFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 319 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl 346 (614)
.-.+..++.|.|++||||||+.+.|+.-
T Consensus 254 ~~~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 254 LSPNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCSSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3456789999999999999999999753
No 268
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.74 E-value=0.03 Score=55.05 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=22.2
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCC
Q 007178 321 PSGECFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 321 ~~Gei~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
....-+.|.||.|+||||+.+.++...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344567899999999999999998743
No 269
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.64 E-value=0.024 Score=58.40 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=22.2
Q ss_pred EEeCCcEEEEECCCCCcHHHHH-HHHhCCC
Q 007178 319 ALPSGECFGMLGPNGAGKTTFI-SMMIGIT 347 (614)
Q Consensus 319 ~i~~Gei~~LlG~NGaGKTTll-~~l~Gl~ 347 (614)
-+++| ++-|-||.|+|||||. .+++...
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~ 53 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYM 53 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHH
Confidence 47889 9999999999999994 5554443
No 270
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.57 E-value=0.0071 Score=56.05 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=23.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCCC
Q 007178 323 GECFGMLGPNGAGKTTFISMMIGITR 348 (614)
Q Consensus 323 Gei~~LlG~NGaGKTTll~~l~Gl~~ 348 (614)
|.++.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 67899999999999999999987653
No 271
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.50 E-value=0.0073 Score=56.38 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=22.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCC
Q 007178 323 GECFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 323 Gei~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
|.++.|.|+.||||||+.+.|+-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999997643
No 272
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.50 E-value=0.13 Score=56.11 Aligned_cols=35 Identities=20% Similarity=0.243 Sum_probs=28.4
Q ss_pred ceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 007178 311 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG 345 (614)
Q Consensus 311 ~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~G 345 (614)
..|+.+.-.+++|+++.|.|+.|+||||+..-++-
T Consensus 230 ~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 230 TGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp TTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 35666554699999999999999999999866654
No 273
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.49 E-value=0.03 Score=69.47 Aligned_cols=36 Identities=31% Similarity=0.533 Sum_probs=29.4
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEE
Q 007178 319 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 354 (614)
Q Consensus 319 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i 354 (614)
-+++|+++.|.||+|+|||||...++.......|.+
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~V 763 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTC 763 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCe
Confidence 499999999999999999999998887654433433
No 274
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.46 E-value=0.0077 Score=58.06 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=22.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhC
Q 007178 322 SGECFGMLGPNGAGKTTFISMMIG 345 (614)
Q Consensus 322 ~Gei~~LlG~NGaGKTTll~~l~G 345 (614)
++-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999987
No 275
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.44 E-value=0.011 Score=64.04 Aligned_cols=56 Identities=11% Similarity=0.220 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHhCCCCEEEEeCCC-CCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHH
Q 007178 434 GMKRRLSVAISLIGNPKVVYMDEPS-TGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEA 492 (614)
Q Consensus 434 G~kqrl~ia~al~~~p~vllLDEPt-sgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~e~ 492 (614)
.+++....+...+.+++++|+.... .|+.+.. +++++.+++ .++.++++.+-.|..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~~--~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILYR--TKKPVVLAVNKLDNT 144 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHTT--CCSCEEEEEECC---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHHH--cCCCEEEEEECccch
Confidence 3666666777777788888877643 4565554 456655543 467787777777654
No 276
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.43 E-value=0.007 Score=56.74 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=23.0
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCC
Q 007178 321 PSGECFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 321 ~~Gei~~LlG~NGaGKTTll~~l~Gl 346 (614)
.++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999753
No 277
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.38 E-value=0.0079 Score=54.92 Aligned_cols=19 Identities=26% Similarity=0.560 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 007178 325 CFGMLGPNGAGKTTFISMM 343 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l 343 (614)
+++|.||.||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 278
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.35 E-value=0.007 Score=60.28 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=21.1
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCC
Q 007178 324 ECFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 324 ei~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
.+++|.|||||||||+.+.|++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999998754
No 279
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.34 E-value=0.0074 Score=57.04 Aligned_cols=32 Identities=22% Similarity=0.295 Sum_probs=26.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCe
Q 007178 323 GECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGL 359 (614)
Q Consensus 323 Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~ 359 (614)
..+++|.|+.||||||+.+.|+.. |-..++.-
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d 39 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDLD 39 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEccc
Confidence 458999999999999999999975 66666543
No 280
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.34 E-value=0.08 Score=53.45 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=22.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCC
Q 007178 322 SGECFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 322 ~Gei~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
++..+.|.||.|+||||+.+.++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999888755
No 281
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.31 E-value=0.0086 Score=60.86 Aligned_cols=36 Identities=25% Similarity=0.343 Sum_probs=28.7
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcC
Q 007178 321 PSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG 358 (614)
Q Consensus 321 ~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G 358 (614)
.+|.++.|.||+||||||+.+.|..-++ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 3577899999999999999999976442 35677765
No 282
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.30 E-value=0.0024 Score=61.18 Aligned_cols=30 Identities=27% Similarity=0.481 Sum_probs=24.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCccEE
Q 007178 325 CFGMLGPNGAGKTTFISMMIGITRTTSGTA 354 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~~p~sG~i 354 (614)
+++|.|++||||||+.+.|...+.+....+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v 31 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSV 31 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 689999999999999999998776533333
No 283
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.16 E-value=0.01 Score=56.03 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999998754
No 284
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.13 E-value=0.0088 Score=55.50 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
++.|.|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998644
No 285
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.09 E-value=0.0071 Score=56.35 Aligned_cols=25 Identities=24% Similarity=0.165 Sum_probs=22.4
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhC
Q 007178 321 PSGECFGMLGPNGAGKTTFISMMIG 345 (614)
Q Consensus 321 ~~Gei~~LlG~NGaGKTTll~~l~G 345 (614)
.++.++.|.|++||||||+.+.|+-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 4678899999999999999999984
No 286
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.07 E-value=0.012 Score=55.59 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=24.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCC
Q 007178 322 SGECFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 322 ~Gei~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
+|.+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999766
No 287
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.05 E-value=0.011 Score=56.35 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 007178 326 FGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 326 ~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
+.|.||+|||||||++.|....
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999986543
No 288
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.03 E-value=0.012 Score=54.80 Aligned_cols=26 Identities=31% Similarity=0.323 Sum_probs=22.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCC
Q 007178 322 SGECFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 322 ~Gei~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
.+.++.|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999997543
No 289
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.96 E-value=0.013 Score=54.14 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=20.2
Q ss_pred cEEEEECCCCCcHHHHHHHHhC
Q 007178 324 ECFGMLGPNGAGKTTFISMMIG 345 (614)
Q Consensus 324 ei~~LlG~NGaGKTTll~~l~G 345 (614)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 290
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.96 E-value=0.0077 Score=56.43 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=22.8
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCCCC
Q 007178 324 ECFGMLGPNGAGKTTFISMMIGITRT 349 (614)
Q Consensus 324 ei~~LlG~NGaGKTTll~~l~Gl~~p 349 (614)
.+++|.|++|||||||++.|.+.++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 47999999999999999999887653
No 291
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.94 E-value=0.014 Score=55.42 Aligned_cols=28 Identities=18% Similarity=0.343 Sum_probs=24.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCCC
Q 007178 322 SGECFGMLGPNGAGKTTFISMMIGITRT 349 (614)
Q Consensus 322 ~Gei~~LlG~NGaGKTTll~~l~Gl~~p 349 (614)
+|.+++|.|+.||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4778999999999999999999875543
No 292
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.87 E-value=0.014 Score=54.42 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=20.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhC
Q 007178 322 SGECFGMLGPNGAGKTTFISMMIG 345 (614)
Q Consensus 322 ~Gei~~LlG~NGaGKTTll~~l~G 345 (614)
++.+++|.|+.||||||+.+.|+-
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999874
No 293
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.84 E-value=0.013 Score=54.88 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=23.1
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCC
Q 007178 321 PSGECFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 321 ~~Gei~~LlG~NGaGKTTll~~l~Gl 346 (614)
.++.+++|.|+.||||||+.+.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999753
No 294
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.80 E-value=0.032 Score=57.65 Aligned_cols=33 Identities=15% Similarity=0.122 Sum_probs=27.0
Q ss_pred eeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 007178 313 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIG 345 (614)
Q Consensus 313 l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~G 345 (614)
|+.+--.+.+|.++.|.||.|+|||||...++.
T Consensus 113 LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 113 VAEFGGHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEETTEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred HHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 333324688899999999999999999998874
No 295
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.77 E-value=0.015 Score=55.35 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=23.3
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCC
Q 007178 321 PSGECFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 321 ~~Gei~~LlG~NGaGKTTll~~l~Gl 346 (614)
.+|.+++|.|+.||||||+.+.|+-.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999754
No 296
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.75 E-value=0.019 Score=57.87 Aligned_cols=23 Identities=22% Similarity=0.547 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
.++|+|++|+|||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 297
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.74 E-value=0.076 Score=66.82 Aligned_cols=37 Identities=27% Similarity=0.440 Sum_probs=28.7
Q ss_pred ceeeeeeE--EEeCCcEEEEECCCCCcHHHHHHHHhCCC
Q 007178 311 VAVNGLSL--ALPSGECFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 311 ~~l~~isl--~i~~Gei~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
..||.+-= -+++|+++.|.||.|+|||||...++...
T Consensus 369 ~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~ 407 (2050)
T 3cmu_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 407 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34555432 48999999999999999999987776543
No 298
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.72 E-value=0.025 Score=51.09 Aligned_cols=22 Identities=18% Similarity=0.443 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
-++++|+.|+|||||++.+++-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999873
No 299
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.65 E-value=0.017 Score=55.12 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=23.6
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhCC
Q 007178 320 LPSGECFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 320 i~~Gei~~LlG~NGaGKTTll~~l~Gl 346 (614)
..+|.+++|.|+.||||||+.+.|+-.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999999999854
No 300
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.63 E-value=0.044 Score=56.83 Aligned_cols=43 Identities=26% Similarity=0.270 Sum_probs=32.7
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHH
Q 007178 447 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSME 490 (614)
Q Consensus 447 ~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~ 490 (614)
++++++++||. -.|++.+...+.+.+.+...+..+|++|++.+
T Consensus 118 ~~~~vliiDe~-~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 118 GRFKVYLIDEV-HMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (373)
T ss_dssp SSSEEEEEECG-GGSCHHHHHHHHHHHHSCCSSEEEEEEESCGG
T ss_pred CCeEEEEEECc-chhcHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 36799999995 45788888888777766555677888888765
No 301
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.60 E-value=0.02 Score=51.70 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
-++++|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999998754
No 302
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.60 E-value=0.014 Score=54.20 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=18.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCC
Q 007178 322 SGECFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 322 ~Gei~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
++.++.|.|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 56789999999999999999997543
No 303
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.60 E-value=0.015 Score=54.33 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=21.8
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCCC
Q 007178 324 ECFGMLGPNGAGKTTFISMMIGITR 348 (614)
Q Consensus 324 ei~~LlG~NGaGKTTll~~l~Gl~~ 348 (614)
-.++++|+.|+|||||++.++|-..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3689999999999999999988653
No 304
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.54 E-value=0.016 Score=54.89 Aligned_cols=23 Identities=17% Similarity=0.328 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998754
No 305
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.54 E-value=0.038 Score=64.66 Aligned_cols=35 Identities=26% Similarity=0.367 Sum_probs=26.5
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCCCCCcc-EEEEcC
Q 007178 324 ECFGMLGPNGAGKTTFISMMIGITRTTSG-TAYVQG 358 (614)
Q Consensus 324 ei~~LlG~NGaGKTTll~~l~Gl~~p~sG-~i~i~G 358 (614)
..+.|.||+|+|||++.+.|+.......+ -+.++.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~ 624 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM 624 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEec
Confidence 47889999999999999999987654333 344443
No 306
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.52 E-value=0.017 Score=54.64 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
.++++|+.|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5799999999999999999874
No 307
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.51 E-value=0.016 Score=61.21 Aligned_cols=21 Identities=24% Similarity=0.513 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 007178 326 FGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 326 ~~LlG~NGaGKTTll~~l~Gl 346 (614)
++|+|++|+|||||++.|+|.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999985
No 308
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.50 E-value=0.019 Score=57.27 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
.++++|+.|+|||||++.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47899999999999999999974
No 309
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.48 E-value=0.016 Score=52.31 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGITR 348 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~~ 348 (614)
-++++|+.|+|||||++.++|...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 368999999999999999988543
No 310
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.48 E-value=0.044 Score=49.23 Aligned_cols=38 Identities=11% Similarity=0.181 Sum_probs=27.4
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcC
Q 007178 449 PKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTH 487 (614)
Q Consensus 449 p~vllLDEPtsgLD~~~~~~i~~~l~~~~-~g~tIil~TH 487 (614)
..++++||.- .+++..+..+.+.+.+.. .+..+|.+|+
T Consensus 76 ~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn 114 (143)
T 3co5_A 76 GGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCS 114 (143)
T ss_dssp TSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred CCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 4679999964 678888888888887653 3455555554
No 311
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.42 E-value=0.02 Score=52.11 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
-++++|+.|+|||||++.++|-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47899999999999999999854
No 312
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.35 E-value=0.021 Score=53.52 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
+++|.|+.||||||+.+.|.-.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998654
No 313
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.31 E-value=0.22 Score=51.17 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=22.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCC
Q 007178 322 SGECFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 322 ~Gei~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
+..-+.|.||.|+||||+.+.++...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 45678899999999999999999765
No 314
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.30 E-value=0.033 Score=57.29 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=30.8
Q ss_pred cceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 007178 310 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG 345 (614)
Q Consensus 310 ~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~G 345 (614)
...+++..+++ .|.-+.|.|++|+||||+...|.+
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 45788888888 689999999999999999998876
No 315
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.29 E-value=0.021 Score=53.23 Aligned_cols=23 Identities=26% Similarity=0.249 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
++.|.|+.||||||+.+.|+--+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998654
No 316
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.28 E-value=0.021 Score=52.15 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
-++++|+.|+|||||++.+.|-.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 317
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.25 E-value=0.02 Score=51.72 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
-++++|+.|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3789999999999999999874
No 318
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.24 E-value=0.014 Score=53.78 Aligned_cols=23 Identities=35% Similarity=0.352 Sum_probs=20.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHhC
Q 007178 323 GECFGMLGPNGAGKTTFISMMIG 345 (614)
Q Consensus 323 Gei~~LlG~NGaGKTTll~~l~G 345 (614)
.-.++++|++|+|||||++.+++
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999975
No 319
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.24 E-value=0.023 Score=51.47 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 007178 326 FGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 326 ~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
++++|+.|+|||||++.++|..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 6899999999999999998754
No 320
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.20 E-value=0.026 Score=54.35 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=22.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCC
Q 007178 322 SGECFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 322 ~Gei~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
+|-.+.|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999997643
No 321
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.19 E-value=0.021 Score=51.21 Aligned_cols=23 Identities=13% Similarity=0.303 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
.++++|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999998754
No 322
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.19 E-value=0.029 Score=51.22 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=22.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCC
Q 007178 322 SGECFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 322 ~Gei~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
+.-.++++|+.|+|||||++.+++-.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34578999999999999999998743
No 323
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.18 E-value=0.022 Score=56.27 Aligned_cols=56 Identities=7% Similarity=-0.024 Sum_probs=35.4
Q ss_pred HHHHHHHHHHH---hCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c---CCceEEEEcCCHHH
Q 007178 435 MKRRLSVAISL---IGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K---QGRAIILTTHSMEE 491 (614)
Q Consensus 435 ~kqrl~ia~al---~~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~---~g~tIil~TH~~~e 491 (614)
++.+-.+.+++ ..+++++|+--+.+.++.. .+.+++.+++. . .+.++|+++|-.|.
T Consensus 89 ~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~-~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 89 DPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQ-DQQAVRQVRDMFGEDVLKWMVIVFTRKEDL 151 (247)
T ss_dssp STTSHHHHHHHHHHTTCCSEEEEEEETTBCCHH-HHHHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHH-HHHHHHHHHHHhChhhhccEEEEEEchHhc
Confidence 33344455554 3788888877666666554 34556666553 2 26899999998764
No 324
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.17 E-value=0.021 Score=51.24 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
-++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998763
No 325
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.16 E-value=0.019 Score=51.40 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999874
No 326
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.11 E-value=0.022 Score=51.22 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
-++++|+.|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999864
No 327
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.11 E-value=0.025 Score=53.14 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=23.9
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhCCC
Q 007178 320 LPSGECFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 320 i~~Gei~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
+..+.+++|.|+.||||||+.+.|+..+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467899999999999999999997643
No 328
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.07 E-value=0.025 Score=54.80 Aligned_cols=26 Identities=23% Similarity=0.165 Sum_probs=21.8
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCC
Q 007178 321 PSGECFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 321 ~~Gei~~LlG~NGaGKTTll~~l~Gl 346 (614)
.++.+++|.|+.||||||+.+.|+.-
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999853
No 329
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.05 E-value=0.022 Score=53.12 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.7
Q ss_pred cEEEEECCCCCcHHHHHHHHhCC
Q 007178 324 ECFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 324 ei~~LlG~NGaGKTTll~~l~Gl 346 (614)
-.++++|+.|+|||||++.+.|-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35799999999999999999875
No 330
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.00 E-value=0.024 Score=51.11 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
-++++|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999863
No 331
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.00 E-value=0.03 Score=51.40 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=21.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCC
Q 007178 323 GECFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 323 Gei~~LlG~NGaGKTTll~~l~Gl 346 (614)
-++++|.|+.||||||+.+.|+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999753
No 332
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.99 E-value=0.023 Score=52.74 Aligned_cols=23 Identities=13% Similarity=0.404 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
.++++|+.|+|||||++.+.|-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58899999999999999998764
No 333
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.99 E-value=0.024 Score=51.31 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
-++++|+.|+|||||++.+++-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999865
No 334
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.97 E-value=0.26 Score=61.25 Aligned_cols=35 Identities=29% Similarity=0.467 Sum_probs=28.0
Q ss_pred ceeeeeeE--EEeCCcEEEEECCCCCcHHHHHHHHhC
Q 007178 311 VAVNGLSL--ALPSGECFGMLGPNGAGKTTFISMMIG 345 (614)
Q Consensus 311 ~~l~~isl--~i~~Gei~~LlG~NGaGKTTll~~l~G 345 (614)
..||.+-= -+++|+++-|.||.|+|||||.--++.
T Consensus 369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~ 405 (1706)
T 3cmw_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 405 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 45666532 489999999999999999999866654
No 335
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.96 E-value=0.024 Score=51.82 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
.++++|+.|+|||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999988743
No 336
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.90 E-value=0.025 Score=51.60 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
-++++|+.|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999864
No 337
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.89 E-value=0.023 Score=51.35 Aligned_cols=22 Identities=18% Similarity=0.437 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 007178 326 FGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 326 ~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
++++|+.|+|||||++.+.+-.
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 6899999999999999998753
No 338
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.88 E-value=0.17 Score=54.51 Aligned_cols=36 Identities=11% Similarity=0.103 Sum_probs=30.0
Q ss_pred cceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 007178 310 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG 345 (614)
Q Consensus 310 ~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~G 345 (614)
...|+.+.-.+++|+++.|.|+.|+||||+.--++.
T Consensus 184 ~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 184 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp CHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred cHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 346777665799999999999999999999876654
No 339
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.88 E-value=0.034 Score=52.67 Aligned_cols=25 Identities=36% Similarity=0.347 Sum_probs=22.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCC
Q 007178 322 SGECFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 322 ~Gei~~LlG~NGaGKTTll~~l~Gl 346 (614)
.+-+++|.|+.||||||+.+.|+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999753
No 340
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.88 E-value=0.032 Score=50.27 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
-++++|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998643
No 341
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.87 E-value=0.023 Score=51.87 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
-++++|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999875
No 342
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.86 E-value=0.044 Score=52.12 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
-++++|+.|+|||||++.+++-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999988764
No 343
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.84 E-value=0.032 Score=51.57 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 007178 326 FGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 326 ~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
++++|+.|+|||||++.++|-.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999998853
No 344
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.82 E-value=0.031 Score=53.51 Aligned_cols=22 Identities=32% Similarity=0.373 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
.++|.|+.||||||+.+.|+.-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999643
No 345
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.82 E-value=0.031 Score=52.09 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999997644
No 346
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.81 E-value=0.033 Score=52.76 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=21.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCC
Q 007178 322 SGECFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 322 ~Gei~~LlG~NGaGKTTll~~l~Gl 346 (614)
+..+++|.|+.||||||+.+.|+-.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999754
No 347
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.81 E-value=0.15 Score=51.92 Aligned_cols=42 Identities=21% Similarity=0.342 Sum_probs=32.0
Q ss_pred CCCEEEEeCCCCCCC-HHHHHHHHHHHHHhcCCceEEEEcCCHH
Q 007178 448 NPKVVYMDEPSTGLD-PASRNNLWNVVKRAKQGRAIILTTHSME 490 (614)
Q Consensus 448 ~p~vllLDEPtsgLD-~~~~~~i~~~l~~~~~g~tIil~TH~~~ 490 (614)
+++++++||.- .+. ......+...+.+...+..+|++|++.+
T Consensus 105 ~~~vliiDEi~-~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFD-RSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCC-CGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred CCeEEEEECCc-ccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 78999999974 344 6667777777776666678888888765
No 348
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.80 E-value=0.033 Score=55.42 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=22.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCC
Q 007178 322 SGECFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 322 ~Gei~~LlG~NGaGKTTll~~l~Gl 346 (614)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
No 349
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.77 E-value=0.029 Score=52.11 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGITR 348 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~~ 348 (614)
-++++|+.|+|||||++.+.|...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 368999999999999999998654
No 350
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.75 E-value=0.028 Score=51.85 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
-++++|+.|+|||||++.+.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999998643
No 351
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.74 E-value=0.055 Score=51.55 Aligned_cols=51 Identities=22% Similarity=0.335 Sum_probs=37.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCH----------HHHHhhCCEEEEEe
Q 007178 448 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSM----------EEAEALCDRLGIFV 503 (614)
Q Consensus 448 ~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~----------~e~~~l~dri~il~ 503 (614)
+.+++++||--- +|+.. .+.++++ ..|..||++.+++ .++.++||.|.-|+
T Consensus 81 ~~dvViIDEaqf-l~~~~----v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDEI----VEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTHH----HHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHHH----HHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 579999999543 66543 3445553 4589999999865 67778999997664
No 352
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.74 E-value=0.028 Score=50.67 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
-++++|+.|+|||||++.+++-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999863
No 353
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.74 E-value=0.014 Score=63.34 Aligned_cols=46 Identities=28% Similarity=0.354 Sum_probs=36.0
Q ss_pred cceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEE
Q 007178 310 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV 356 (614)
Q Consensus 310 ~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i 356 (614)
.++++.+ ..+-+|+..+|+|++|+|||||++.|++......|.+.+
T Consensus 139 ir~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V 184 (473)
T 1sky_E 139 IKVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISV 184 (473)
T ss_dssp CHHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEE
T ss_pred chHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEE
Confidence 3477776 677889999999999999999999998765543444443
No 354
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.73 E-value=0.04 Score=51.06 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
-++++|+.|+|||||++.+++-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3689999999999999999874
No 355
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.71 E-value=0.032 Score=51.87 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=21.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCC
Q 007178 323 GECFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 323 Gei~~LlG~NGaGKTTll~~l~Gl 346 (614)
+.+++|.|+.||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999753
No 356
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.71 E-value=0.028 Score=52.41 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
-++++|+.|+|||||++.+++-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 36999999999999999998743
No 357
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.69 E-value=0.028 Score=54.28 Aligned_cols=26 Identities=15% Similarity=0.050 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCC
Q 007178 322 SGECFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 322 ~Gei~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
++.++.|.|+.||||||+.+.|+--+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999999997543
No 358
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=93.69 E-value=0.033 Score=56.95 Aligned_cols=22 Identities=23% Similarity=0.641 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
.++|+|++|+|||||++.|.|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 359
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.69 E-value=0.033 Score=50.88 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
-++++|+.|+|||||++.+++-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3789999999999999999874
No 360
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.64 E-value=0.03 Score=51.33 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=20.3
Q ss_pred cEEEEECCCCCcHHHHHHHHhCC
Q 007178 324 ECFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 324 ei~~LlG~NGaGKTTll~~l~Gl 346 (614)
.+++|.|+.||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999754
No 361
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.63 E-value=0.037 Score=50.53 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
+++|.|+.||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999763
No 362
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.63 E-value=0.03 Score=50.70 Aligned_cols=22 Identities=36% Similarity=0.372 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
.++++|+.|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999763
No 363
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.63 E-value=0.03 Score=52.05 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
-++++|+.|+|||||++.++|-.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998853
No 364
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.60 E-value=0.03 Score=51.72 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
-++++|+.|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 365
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.56 E-value=0.036 Score=53.05 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
.++|.||.||||||+.+.|+.-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999653
No 366
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.55 E-value=0.032 Score=50.24 Aligned_cols=20 Identities=35% Similarity=0.396 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 007178 326 FGMLGPNGAGKTTFISMMIG 345 (614)
Q Consensus 326 ~~LlG~NGaGKTTll~~l~G 345 (614)
++++|+.|+|||||++.+.+
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999999975
No 367
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.53 E-value=0.031 Score=52.01 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=20.3
Q ss_pred cEEEEECCCCCcHHHHHHHHhCC
Q 007178 324 ECFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 324 ei~~LlG~NGaGKTTll~~l~Gl 346 (614)
.+++|.|+.||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999753
No 368
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.50 E-value=0.033 Score=55.12 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
.++|+|+.|||||||++.|+|-.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
No 369
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.47 E-value=0.093 Score=52.96 Aligned_cols=43 Identities=14% Similarity=0.299 Sum_probs=31.5
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHH
Q 007178 447 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSME 490 (614)
Q Consensus 447 ~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~ 490 (614)
++++++++||. -.++......+.+.+.+...+..+|++|++.+
T Consensus 106 ~~~~viiiDe~-~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~ 148 (323)
T 1sxj_B 106 GKHKIVILDEA-DSMTAGAQQALRRTMELYSNSTRFAFACNQSN 148 (323)
T ss_dssp TCCEEEEEESG-GGSCHHHHHTTHHHHHHTTTTEEEEEEESCGG
T ss_pred CCceEEEEECc-ccCCHHHHHHHHHHHhccCCCceEEEEeCChh
Confidence 35899999995 34666777777777776556677888887754
No 370
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=93.46 E-value=0.037 Score=55.20 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
.++|+|+.|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999854
No 371
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.46 E-value=0.057 Score=49.56 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 007178 325 CFGMLGPNGAGKTTFISMMIG 345 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~G 345 (614)
.++++|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 478999999999999999984
No 372
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.43 E-value=0.034 Score=50.68 Aligned_cols=23 Identities=17% Similarity=0.380 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
-++++|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998743
No 373
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=93.42 E-value=0.092 Score=57.23 Aligned_cols=76 Identities=16% Similarity=0.239 Sum_probs=56.5
Q ss_pred cccccCCCCChhHHHHHHHHHHHh--C---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEE
Q 007178 423 VADKQAGKYSGGMKRRLSVAISLI--G---------------NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILT 485 (614)
Q Consensus 423 ~~~~~~~~LSgG~kqrl~ia~al~--~---------------~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~ 485 (614)
+.++..+.+||||+|-.-+|++.+ . .=++++|||. +-+|....+..+++++++ |--+|++
T Consensus 372 ~~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l--glQliia 448 (483)
T 3euj_A 372 WMRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL--DMQLLIA 448 (483)
T ss_dssp EEECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT--TCEEEEE
T ss_pred eeecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc--CCEEEEE
Confidence 456678899999999665555433 1 2368999999 999999999999999864 5556777
Q ss_pred cCCHHHHHhhCCEEEEEe
Q 007178 486 THSMEEAEALCDRLGIFV 503 (614)
Q Consensus 486 TH~~~e~~~l~dri~il~ 503 (614)
|=+ .+...+|.++.+.
T Consensus 449 tP~--~i~p~v~~~~~~~ 464 (483)
T 3euj_A 449 APE--NISPERGTTYKLV 464 (483)
T ss_dssp ESS--SCCCSSSEEEECC
T ss_pred Ccc--hhhhccCceEEEE
Confidence 766 4555677776554
No 374
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.42 E-value=0.039 Score=51.03 Aligned_cols=25 Identities=36% Similarity=0.393 Sum_probs=21.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCC
Q 007178 323 GECFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 323 Gei~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
.=.++++|+.|+|||||++.+++-.
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3457999999999999999998743
No 375
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.42 E-value=0.034 Score=50.89 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
-++++|+.|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999998743
No 376
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.39 E-value=0.034 Score=51.60 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
.++++|+.|+|||||++.+++-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 377
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.39 E-value=0.034 Score=51.02 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
-++++|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 4789999999999999999864
No 378
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=93.36 E-value=0.034 Score=55.73 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
.++++|+.|+|||||++.|.|--
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999998754
No 379
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.34 E-value=0.032 Score=50.80 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
-++++|+.|+|||||++.+++-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 380
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=93.30 E-value=0.043 Score=54.92 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=23.0
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCCCCCccE
Q 007178 324 ECFGMLGPNGAGKTTFISMMIGITRTTSGT 353 (614)
Q Consensus 324 ei~~LlG~NGaGKTTll~~l~Gl~~p~sG~ 353 (614)
-.++++|.+|+|||||+|.|.|-..+..|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 578999999999999999999976654443
No 381
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.28 E-value=0.036 Score=52.87 Aligned_cols=23 Identities=22% Similarity=0.522 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
.++++|+.|+|||||++.+++-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998865
No 382
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=93.27 E-value=0.037 Score=55.61 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
.++++|+.|+|||||++.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
No 383
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.23 E-value=0.038 Score=52.01 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
-++++|+.|+|||||++.+++-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
No 384
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.20 E-value=0.045 Score=53.02 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
+++|.|+.||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999753
No 385
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.19 E-value=0.046 Score=52.09 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=21.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCC
Q 007178 323 GECFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 323 Gei~~LlG~NGaGKTTll~~l~Gl 346 (614)
--++||.|+.||||||+.+.|+-.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999999999864
No 386
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.18 E-value=0.049 Score=53.67 Aligned_cols=24 Identities=25% Similarity=0.273 Sum_probs=21.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhC
Q 007178 322 SGECFGMLGPNGAGKTTFISMMIG 345 (614)
Q Consensus 322 ~Gei~~LlG~NGaGKTTll~~l~G 345 (614)
++-+++|.||.||||||+.+.|+-
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999974
No 387
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.18 E-value=0.039 Score=50.48 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
-++++|+.|+|||||++.+++-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
No 388
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.17 E-value=0.038 Score=51.82 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
-++++|+.|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999864
No 389
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.15 E-value=0.036 Score=51.12 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
-++++|+.|+|||||++.+.+-.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998643
No 390
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=93.12 E-value=0.17 Score=52.97 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=20.6
Q ss_pred CcEEEE--ECCCCCcHHHHHHHHhCCC
Q 007178 323 GECFGM--LGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 323 Gei~~L--lG~NGaGKTTll~~l~Gl~ 347 (614)
+..+.| .||.|+|||||++.+....
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 456666 8999999999999987644
No 391
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.08 E-value=0.037 Score=51.58 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
-++++|+.|+|||||++.+++-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 4799999999999999999873
No 392
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.07 E-value=0.041 Score=51.17 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
-++++|+.|+|||||++.+++-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
No 393
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.07 E-value=0.045 Score=51.23 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
-++++|+.|+|||||++.+++-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999874
No 394
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.05 E-value=0.029 Score=57.04 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=19.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCC
Q 007178 322 SGECFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 322 ~Gei~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
++-++||-||.||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998643
No 395
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.01 E-value=0.049 Score=53.81 Aligned_cols=23 Identities=17% Similarity=0.403 Sum_probs=20.8
Q ss_pred cEEEEECCCCCcHHHHHHHHhCC
Q 007178 324 ECFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 324 ei~~LlG~NGaGKTTll~~l~Gl 346 (614)
-+++|.|+.||||||+.+.|+..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999763
No 396
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.01 E-value=0.042 Score=50.42 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
-++++|+.|+|||||++.+++-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999753
No 397
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.00 E-value=0.037 Score=51.52 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
.++++|+.|+|||||++.++|-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998864
No 398
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.00 E-value=0.049 Score=55.73 Aligned_cols=22 Identities=23% Similarity=0.590 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
.++++|+.|||||||++.|.|-
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7899999999999999999985
No 399
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.99 E-value=0.049 Score=51.17 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
-++++|+.|+|||||++.+++-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999998753
No 400
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.98 E-value=0.053 Score=49.83 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
.++++|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3689999999999999999854
No 401
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.95 E-value=0.054 Score=50.34 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
-++++|+.|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999998743
No 402
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.91 E-value=0.047 Score=53.51 Aligned_cols=29 Identities=28% Similarity=0.448 Sum_probs=21.9
Q ss_pred EeCCcEEEEECCCCCcHHHHHHHHhCCCC
Q 007178 320 LPSGECFGMLGPNGAGKTTFISMMIGITR 348 (614)
Q Consensus 320 i~~Gei~~LlG~NGaGKTTll~~l~Gl~~ 348 (614)
..+|.++.+-|+.||||||+.+.|...+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999999986553
No 403
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=92.90 E-value=0.044 Score=51.52 Aligned_cols=22 Identities=27% Similarity=0.646 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
-++|+|++|+|||||++.++|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999863
No 404
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.90 E-value=0.044 Score=52.42 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=20.9
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCC
Q 007178 324 ECFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 324 ei~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
-.++++|+.|+|||||++.|++-.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998653
No 405
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.90 E-value=0.041 Score=51.41 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
-++++|+.|+|||||++.+++-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999998643
No 406
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.89 E-value=0.058 Score=52.25 Aligned_cols=29 Identities=31% Similarity=0.414 Sum_probs=24.7
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCCC
Q 007178 321 PSGECFGMLGPNGAGKTTFISMMIGITRT 349 (614)
Q Consensus 321 ~~Gei~~LlG~NGaGKTTll~~l~Gl~~p 349 (614)
-+|.++.+-|+.||||||+.+.|.-.+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 36889999999999999999999776543
No 407
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=92.87 E-value=0.047 Score=51.48 Aligned_cols=22 Identities=27% Similarity=0.523 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
-++++|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 408
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.84 E-value=0.049 Score=50.54 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=20.3
Q ss_pred cEEEEECCCCCcHHHHHHHHhCC
Q 007178 324 ECFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 324 ei~~LlG~NGaGKTTll~~l~Gl 346 (614)
=.++++|+.|+|||||++.+++-
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35799999999999999999863
No 409
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.84 E-value=0.065 Score=51.01 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
-++++|+.|+|||||++.+++-.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 410
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=92.83 E-value=0.027 Score=53.80 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.3
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCC
Q 007178 324 ECFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 324 ei~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
-.++++|+.|+|||||++.|+|-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 357999999999999999999864
No 411
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=92.81 E-value=0.053 Score=50.53 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
.++++|+.|+|||||++.+++-
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999999874
No 412
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.78 E-value=0.048 Score=50.85 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
-++++|+.|+|||||++.+++-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998743
No 413
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=92.75 E-value=0.054 Score=50.82 Aligned_cols=25 Identities=12% Similarity=0.224 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGITRT 349 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~~p 349 (614)
-++++|+.|+|||||++.+.|-..+
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~~ 46 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMSP 46 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCCG
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4789999999999999999985443
No 414
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=92.74 E-value=0.044 Score=51.65 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
-++++|+.|+|||||++.+++-.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 57899999999999999998753
No 415
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.72 E-value=0.049 Score=49.85 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
-++++|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999864
No 416
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=92.71 E-value=0.21 Score=52.50 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=22.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCC
Q 007178 322 SGECFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 322 ~Gei~~LlG~NGaGKTTll~~l~Gl 346 (614)
++..+.|.||.|+||||+.+.|+..
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 4568899999999999999999765
No 417
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.69 E-value=0.051 Score=50.51 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
-++++|+.|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999863
No 418
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=92.69 E-value=0.055 Score=52.22 Aligned_cols=22 Identities=18% Similarity=0.409 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
.++++|+.|+|||||++.++|-
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999874
No 419
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.67 E-value=0.019 Score=61.83 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=30.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCeeC
Q 007178 323 GECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI 361 (614)
Q Consensus 323 Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~i 361 (614)
..+++++|++|+||||+...|++.+.....+|.+-.-|.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 358999999999999999999998765444555544443
No 420
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.66 E-value=0.05 Score=50.77 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
-++++|+.|+|||||++.+++-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998743
No 421
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.65 E-value=0.046 Score=50.97 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
-++++|+.|+|||||++.+++-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 46899999999999999998744
No 422
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=92.61 E-value=0.051 Score=55.21 Aligned_cols=23 Identities=17% Similarity=0.456 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
.++++|+.|||||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999975
No 423
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.60 E-value=0.052 Score=50.52 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
-++++|+.|+|||||++.+++-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 424
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=92.58 E-value=0.048 Score=50.38 Aligned_cols=22 Identities=27% Similarity=0.238 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
.++++|+.|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999999875
No 425
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.58 E-value=0.053 Score=50.76 Aligned_cols=22 Identities=18% Similarity=0.483 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
-++++|+.|+|||||++.+++-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999874
No 426
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=92.57 E-value=0.048 Score=51.47 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
-++++|+.|+|||||++.+++-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998743
No 427
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.54 E-value=0.053 Score=50.24 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
-++++|+.|+|||||++.+++-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 428
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.54 E-value=0.086 Score=49.07 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
-++++|+.|+|||||++.+++-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4789999999999999888763
No 429
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.53 E-value=0.06 Score=51.80 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=22.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCC
Q 007178 322 SGECFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 322 ~Gei~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
+|-.+.|.|+.||||||+.+.|+-.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999999997643
No 430
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.52 E-value=0.057 Score=54.51 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHhC
Q 007178 323 GECFGMLGPNGAGKTTFISMMIG 345 (614)
Q Consensus 323 Gei~~LlG~NGaGKTTll~~l~G 345 (614)
.-+++|.|+.||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999983
No 431
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=92.51 E-value=0.063 Score=51.05 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
-++++|+.|+|||||++.+++-.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37899999999999999998754
No 432
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.50 E-value=0.054 Score=50.89 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
-++++|+.|+|||||++.+++-.
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 57999999999999999998753
No 433
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=92.48 E-value=0.23 Score=48.74 Aligned_cols=51 Identities=14% Similarity=0.160 Sum_probs=38.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCC----------HHHHHhhCCEEEEEe
Q 007178 447 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHS----------MEEAEALCDRLGIFV 503 (614)
Q Consensus 447 ~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~----------~~e~~~l~dri~il~ 503 (614)
.+.+++++||----.| ++++++.+ ..|+.||++.++ +.++..+||.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 7889999999766543 55555543 368999999999 556677999998764
No 434
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=92.48 E-value=0.063 Score=50.29 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
-++++|+.|+|||||++.+.+-
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 435
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.43 E-value=0.11 Score=48.87 Aligned_cols=35 Identities=17% Similarity=0.140 Sum_probs=27.9
Q ss_pred cceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 007178 310 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG 345 (614)
Q Consensus 310 ~~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~G 345 (614)
+..++..-+.+. |.-+.|.|++|||||||...+..
T Consensus 4 ~~~lHas~v~v~-G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 4 KQTWHANFLVID-KMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp CEEEESEEEEET-TEEEEEEESSSSSHHHHHHHHHH
T ss_pred cEEEEEEEEEEC-CEEEEEEcCCCCCHHHHHHHHHH
Confidence 456666666654 88999999999999999887754
No 436
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.42 E-value=0.061 Score=51.54 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
.++|.|+.||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999753
No 437
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.41 E-value=0.067 Score=52.74 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=24.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCC
Q 007178 322 SGECFGMLGPNGAGKTTFISMMIGITR 348 (614)
Q Consensus 322 ~Gei~~LlG~NGaGKTTll~~l~Gl~~ 348 (614)
+|.++.+.|++||||||+.+.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987654
No 438
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.38 E-value=0.063 Score=53.35 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
.++++|+.|+|||||++.|+|-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999999854
No 439
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=92.37 E-value=0.061 Score=51.36 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
-++++|+.|+|||||++.+++-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 440
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.35 E-value=0.044 Score=50.15 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
-++++|+.|+|||||++.+++-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999864
No 441
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.31 E-value=0.059 Score=50.89 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
-++++|+.|+|||||++.+++-
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999999864
No 442
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.25 E-value=0.074 Score=51.53 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=24.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCC
Q 007178 322 SGECFGMLGPNGAGKTTFISMMIGITR 348 (614)
Q Consensus 322 ~Gei~~LlG~NGaGKTTll~~l~Gl~~ 348 (614)
+|.++.+-|+.||||||..+.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999987654
No 443
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=92.22 E-value=0.084 Score=48.34 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=21.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCC
Q 007178 323 GECFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 323 Gei~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
+..+.|.||.|+||||+++.++..+
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999988754
No 444
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.20 E-value=0.078 Score=50.27 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
.++++|+.|+|||||++.+++-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 445
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=92.20 E-value=0.045 Score=50.33 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=9.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
-++++|+.|+|||||++.+++-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998764
No 446
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.18 E-value=0.083 Score=51.40 Aligned_cols=26 Identities=35% Similarity=0.371 Sum_probs=22.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCC
Q 007178 322 SGECFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 322 ~Gei~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
++..+.|.|+.||||||+.+.|+--+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999997543
No 447
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.16 E-value=0.064 Score=50.27 Aligned_cols=23 Identities=30% Similarity=0.219 Sum_probs=20.1
Q ss_pred cEEEEECCCCCcHHHHHHHHhCC
Q 007178 324 ECFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 324 ei~~LlG~NGaGKTTll~~l~Gl 346 (614)
=.++++|+.|+|||||++.+++-
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999753
No 448
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.13 E-value=0.059 Score=51.06 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
-++++|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 449
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.07 E-value=0.076 Score=53.57 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=23.9
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEc
Q 007178 324 ECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQ 357 (614)
Q Consensus 324 ei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~ 357 (614)
.++.|.|++||||||+.+.|+-.+ .|-..++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~---~~~~~i~ 33 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNIN 33 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC---CCcEEec
Confidence 478999999999999999998621 2545554
No 450
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.06 E-value=0.071 Score=51.04 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=22.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCC
Q 007178 323 GECFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 323 Gei~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
+.+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999998754
No 451
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=91.89 E-value=0.086 Score=51.24 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=27.5
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEE
Q 007178 321 PSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 354 (614)
Q Consensus 321 ~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i 354 (614)
.+|.++.+-|+.||||||+.+.|.-.+.. .+.+
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~-~~~~ 35 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP-NCKL 35 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS-SEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc-cceE
Confidence 36899999999999999999999887765 3433
No 452
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=91.83 E-value=0.068 Score=53.70 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGITR 348 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~~ 348 (614)
.++++|..|+|||||++.|+|...
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCCc
Confidence 689999999999999999999653
No 453
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.82 E-value=0.079 Score=51.53 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=23.6
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 007178 319 ALPSGECFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 319 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl 346 (614)
...+..++.|+||.||||+|..+.|+--
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3456778999999999999999999743
No 454
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=91.80 E-value=0.085 Score=50.80 Aligned_cols=23 Identities=26% Similarity=0.613 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
-++|+|+.|+|||||++.++|..
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998743
No 455
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=91.80 E-value=0.074 Score=53.05 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
.++++|+.|+|||||++.|+|-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999999854
No 456
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=91.79 E-value=0.067 Score=50.40 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
-++++|+.|+|||||++.+++-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999998743
No 457
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.77 E-value=0.084 Score=54.89 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=22.1
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCCC
Q 007178 324 ECFGMLGPNGAGKTTFISMMIGITR 348 (614)
Q Consensus 324 ei~~LlG~NGaGKTTll~~l~Gl~~ 348 (614)
.+++|.||+||||||+.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4899999999999999999987653
No 458
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=91.69 E-value=0.1 Score=51.04 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=24.6
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCCC
Q 007178 321 PSGECFGMLGPNGAGKTTFISMMIGITR 348 (614)
Q Consensus 321 ~~Gei~~LlG~NGaGKTTll~~l~Gl~~ 348 (614)
.+|.++.+-|+.||||||+.+.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999987654
No 459
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.69 E-value=0.071 Score=49.62 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
-++++|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 460
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.63 E-value=0.099 Score=53.74 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=22.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCC
Q 007178 323 GECFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 323 Gei~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
+.+++|.||+|||||||...|+--+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4588999999999999999998654
No 461
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.54 E-value=0.15 Score=49.03 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=28.4
Q ss_pred ceeeeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 007178 311 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 311 ~~l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl 346 (614)
..++..-+.+ .|..+.|.||+|+|||||...|+.-
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4566666665 4889999999999999999998754
No 462
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=91.53 E-value=0.044 Score=52.20 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
-++++|+.|+|||||++.++|-.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999998643
No 463
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.51 E-value=0.098 Score=51.13 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=23.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCC
Q 007178 322 SGECFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 322 ~Gei~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
+|.+++|-|+.||||||+.+.|+-.+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36789999999999999999998765
No 464
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=91.47 E-value=0.036 Score=64.44 Aligned_cols=43 Identities=19% Similarity=0.369 Sum_probs=33.3
Q ss_pred eeEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEcCee
Q 007178 316 LSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD 360 (614)
Q Consensus 316 isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG~i~i~G~~ 360 (614)
.++.+.+++.+.|.||+|+|||||.++|++... .+-+.+++.+
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~ 546 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPE 546 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCSS
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEechH
Confidence 356778999999999999999999999998764 2334444433
No 465
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.46 E-value=0.1 Score=54.12 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=23.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCC
Q 007178 322 SGECFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 322 ~Gei~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
++.++.|+||.|||||||...|+.-+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 45689999999999999999999766
No 466
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=91.38 E-value=0.11 Score=53.29 Aligned_cols=27 Identities=26% Similarity=0.261 Sum_probs=24.7
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHHhC
Q 007178 319 ALPSGECFGMLGPNGAGKTTFISMMIG 345 (614)
Q Consensus 319 ~i~~Gei~~LlG~NGaGKTTll~~l~G 345 (614)
.+++|+++.|.||+|+||||+...++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999999987764
No 467
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=91.37 E-value=0.064 Score=49.74 Aligned_cols=22 Identities=32% Similarity=0.283 Sum_probs=19.6
Q ss_pred cEEEEECCCCCcHHHHHHHHhC
Q 007178 324 ECFGMLGPNGAGKTTFISMMIG 345 (614)
Q Consensus 324 ei~~LlG~NGaGKTTll~~l~G 345 (614)
=-++++|+.|+|||||++.+.+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3589999999999999999965
No 468
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=91.28 E-value=0.51 Score=48.54 Aligned_cols=43 Identities=26% Similarity=0.357 Sum_probs=31.2
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHH
Q 007178 447 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSME 490 (614)
Q Consensus 447 ~~p~vllLDEPtsgLD~~~~~~i~~~l~~~~~g~tIil~TH~~~ 490 (614)
++.+|+++||.- .|...+...+.+.+.+-..+..+|++|++.+
T Consensus 107 ~~~kvviIdead-~l~~~a~naLLk~lEep~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 107 GGAKVVWVTDAA-LLTDAAANALLKTLEEPPAETWFFLATREPE 149 (334)
T ss_dssp SSCEEEEESCGG-GBCHHHHHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred CCcEEEEECchh-hcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 578999999963 4667777666666654444677888998875
No 469
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=91.27 E-value=0.045 Score=51.34 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=4.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
-++++|+.|+|||||++.+++-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999998865
No 470
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.23 E-value=0.089 Score=50.41 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
.++++|+.|+|||||++-+++-.
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 68899999999999998887643
No 471
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=91.21 E-value=0.085 Score=49.79 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
-++++|+.|+|||||++.+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 4789999999999999999764
No 472
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=91.15 E-value=0.095 Score=50.28 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
-++++|+.|+|||||++.+++-.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 473
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=91.09 E-value=0.45 Score=46.03 Aligned_cols=51 Identities=18% Similarity=0.276 Sum_probs=38.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcC----------CHHHHHhhCCEEEEEe
Q 007178 448 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTH----------SMEEAEALCDRLGIFV 503 (614)
Q Consensus 448 ~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH----------~~~e~~~l~dri~il~ 503 (614)
+.+++++||--- +|+.. + +.++++ .+|..||++.+ -+.++..+||.|.-|+
T Consensus 101 ~~dvViIDEaQF-~~~~~---V-~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGDI---V-EVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTTH---H-HHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHHH---H-HHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 589999999765 66543 2 455553 46899999999 5567778999998775
No 474
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.09 E-value=0.11 Score=53.60 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.6
Q ss_pred cEEEEECCCCCcHHHHHHHHhCCC
Q 007178 324 ECFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 324 ei~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
.++.|+||+||||||+.+.|+.-+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998755
No 475
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.07 E-value=0.23 Score=62.59 Aligned_cols=35 Identities=29% Similarity=0.463 Sum_probs=30.8
Q ss_pred cceeeeee--EEEeCCcEEEEECCCCCcHHHHHHHHh
Q 007178 310 KVAVNGLS--LALPSGECFGMLGPNGAGKTTFISMMI 344 (614)
Q Consensus 310 ~~~l~~is--l~i~~Gei~~LlG~NGaGKTTll~~l~ 344 (614)
...|+++. .-+++|+++.+.||.|+|||||...+.
T Consensus 1066 i~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~ 1102 (2050)
T 3cmu_A 1066 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 1102 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHH
T ss_pred cHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 45678877 579999999999999999999998876
No 476
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.99 E-value=0.09 Score=54.88 Aligned_cols=27 Identities=26% Similarity=0.261 Sum_probs=23.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCCCC
Q 007178 323 GECFGMLGPNGAGKTTFISMMIGITRT 349 (614)
Q Consensus 323 Gei~~LlG~NGaGKTTll~~l~Gl~~p 349 (614)
.-+++|+|+.|+|||||++.|++.+..
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 457999999999999999999876543
No 477
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=90.89 E-value=0.093 Score=49.63 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 007178 325 CFGMLGPNGAGKTTFISMMIG 345 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~G 345 (614)
.++++|+.|+|||||++.+++
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 578999999999999988875
No 478
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=90.85 E-value=0.11 Score=47.62 Aligned_cols=26 Identities=23% Similarity=0.190 Sum_probs=21.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCCC
Q 007178 323 GECFGMLGPNGAGKTTFISMMIGITR 348 (614)
Q Consensus 323 Gei~~LlG~NGaGKTTll~~l~Gl~~ 348 (614)
+..+.|.||.|+||||+++.++....
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 44668999999999999999987653
No 479
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=90.83 E-value=0.083 Score=52.41 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=23.7
Q ss_pred eCCcEEEEECCCCCcHHHHHHHHhCCC
Q 007178 321 PSGECFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 321 ~~Gei~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
.++.+++|-|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 467899999999999999999998765
No 480
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=90.76 E-value=0.097 Score=49.50 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
-++++|+.|+|||||++.+++-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999853
No 481
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=90.67 E-value=0.14 Score=48.28 Aligned_cols=52 Identities=21% Similarity=0.316 Sum_probs=33.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHH----------HHHhhCCEEEEEe
Q 007178 447 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSME----------EAEALCDRLGIFV 503 (614)
Q Consensus 447 ~~p~vllLDEPtsgLD~~~~~~i~~~l~~~-~~g~tIil~TH~~~----------e~~~l~dri~il~ 503 (614)
.+++++++||-=. +|+. +.+.++.+ .+|..|+++.++.+ ....+||.+.-|+
T Consensus 75 ~~~dvviIDE~Q~-~~~~----~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 75 EDTRGVFIDEVQF-FNPS----LFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TTEEEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCCEEEEECccc-CCHH----HHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 4678999999643 4443 44455543 45889999888654 2334688886554
No 482
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=90.64 E-value=0.11 Score=49.63 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
-++++|+.|+|||||++.+++-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999998764
No 483
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=90.46 E-value=0.45 Score=54.73 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
.+.|.||.|+|||++.+.|+...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998865
No 484
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=90.40 E-value=0.17 Score=51.20 Aligned_cols=30 Identities=20% Similarity=0.252 Sum_probs=23.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCCCCCcc
Q 007178 323 GECFGMLGPNGAGKTTFISMMIGITRTTSG 352 (614)
Q Consensus 323 Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG 352 (614)
+-.++++|..|+|||||+|.|.|-.....|
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~ 149 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAKTG 149 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC---
T ss_pred CceEEEEecCCCchHHHHHHHhcCceeecC
Confidence 346899999999999999999997644333
No 485
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=90.37 E-value=0.18 Score=52.45 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=26.2
Q ss_pred eeeeEEEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 007178 314 NGLSLALPSGECFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 314 ~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl 346 (614)
+.+.++++.---++|+|..+||||||++.|++-
T Consensus 149 ~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 149 RYIVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred hhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 445556655456899999999999999999874
No 486
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.33 E-value=0.16 Score=52.14 Aligned_cols=25 Identities=24% Similarity=0.402 Sum_probs=21.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCC
Q 007178 323 GECFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 323 Gei~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
..++.|.||+|||||||...|+--.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4589999999999999999998654
No 487
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=90.22 E-value=0.13 Score=54.76 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=30.9
Q ss_pred HHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHhCCCCEEEE
Q 007178 407 QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYM 454 (614)
Q Consensus 407 ~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ia~al~~~p~vllL 454 (614)
+.++++++.++... +...+|.++.+++.-...+...|-++++
T Consensus 180 ~~~~~~l~~l~~~~------~~~~~~~~e~~~l~~~~~~~~kP~i~v~ 221 (397)
T 1wxq_A 180 NDVWEAMHKLNLPE------DPTKWSQDDLLAFASEIRRVNKPMVIAA 221 (397)
T ss_dssp HHHHHHHHHTTCCS------CGGGCCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred HHHHHHHHHhccCC------ccccCCHHHHHHHHHhhhccCCCEEEEE
Confidence 34667777777642 1347899998888777777778999987
No 488
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=90.11 E-value=0.16 Score=48.87 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
++.|+||.||||+|.-+.|+--
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999853
No 489
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=89.97 E-value=0.2 Score=48.38 Aligned_cols=25 Identities=36% Similarity=0.652 Sum_probs=22.5
Q ss_pred EEeCCcEEEEECCCCCcHHHHHHHH
Q 007178 319 ALPSGECFGMLGPNGAGKTTFISMM 343 (614)
Q Consensus 319 ~i~~Gei~~LlG~NGaGKTTll~~l 343 (614)
-+++|+++.|.|+.|+||||+.--+
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~ 50 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHH
Confidence 5899999999999999999997544
No 490
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=89.91 E-value=0.046 Score=54.18 Aligned_cols=30 Identities=33% Similarity=0.638 Sum_probs=23.2
Q ss_pred eeeEEEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 007178 315 GLSLALPSGECFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 315 ~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl 346 (614)
+.+...++| +.|.||.|+||||+.+.|++.
T Consensus 38 ~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 38 NLGAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp HHSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred HCCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 333444555 678999999999999999874
No 491
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=89.85 E-value=0.18 Score=48.35 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=22.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHhCCCC
Q 007178 323 GECFGMLGPNGAGKTTFISMMIGITR 348 (614)
Q Consensus 323 Gei~~LlG~NGaGKTTll~~l~Gl~~ 348 (614)
|..+++=|+.||||||..+.|.-.+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56788899999999999999987664
No 492
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=89.57 E-value=0.24 Score=47.36 Aligned_cols=71 Identities=11% Similarity=0.100 Sum_probs=52.9
Q ss_pred HHHHHHHHHHh--CCCCEEEEeCCCC--CCCHHHHHHHHHHHHHhcCCceEEEEcCCH-HHHHhhCCEEEEEeCCE
Q 007178 436 KRRLSVAISLI--GNPKVVYMDEPST--GLDPASRNNLWNVVKRAKQGRAIILTTHSM-EEAEALCDRLGIFVDGS 506 (614)
Q Consensus 436 kqrl~ia~al~--~~p~vllLDEPts--gLD~~~~~~i~~~l~~~~~g~tIil~TH~~-~e~~~l~dri~il~~G~ 506 (614)
++.+.-|+..+ ++.++|||||.+. .++.....++.+.|.+.-++..||+|+++. +++.++||.|--|..-|
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~vk 181 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADTVSELRPVK 181 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSEEEECCCSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCcceeeeccee
Confidence 45566666777 7789999999865 234444556888887655678999999886 46778899998887644
No 493
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=89.44 E-value=2.9 Score=44.67 Aligned_cols=40 Identities=28% Similarity=0.294 Sum_probs=27.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHhCCCCCCcc-EEEEcCeeC
Q 007178 322 SGECFGMLGPNGAGKTTFISMMIGITRTTSG-TAYVQGLDI 361 (614)
Q Consensus 322 ~Gei~~LlG~NGaGKTTll~~l~Gl~~p~sG-~i~i~G~~i 361 (614)
+..+++++|++|+||||+.--|+..+.-..| +|.+-.-|.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 4568999999999999999888865543312 444433343
No 494
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=89.20 E-value=0.18 Score=53.10 Aligned_cols=36 Identities=28% Similarity=0.476 Sum_probs=28.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC-----------CCCccEEEEcCee
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT-----------RTTSGTAYVQGLD 360 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~-----------~p~sG~i~i~G~~ 360 (614)
-+||+|..-+|||||+|.|+|-- .|..|.+.+.|..
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~ 120 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAK 120 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcE
Confidence 58999999999999999999953 2345666666654
No 495
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=88.79 E-value=0.073 Score=50.14 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 007178 325 CFGMLGPNGAGKTTFISMMIG 345 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~G 345 (614)
-++++|+.|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 578999999999999988865
No 496
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=89.11 E-value=0.17 Score=54.30 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl 346 (614)
.++|+|+.|+|||||++.|+|-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 497
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=89.00 E-value=0.052 Score=51.02 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
-++++|+.|+|||||++.+++-.
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988643
No 498
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=88.75 E-value=0.13 Score=49.19 Aligned_cols=21 Identities=38% Similarity=0.733 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHH-HhCC
Q 007178 326 FGMLGPNGAGKTTFISM-MIGI 346 (614)
Q Consensus 326 ~~LlG~NGaGKTTll~~-l~Gl 346 (614)
++++|+.|+|||||++. +.|-
T Consensus 18 i~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 18 LVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999998 5553
No 499
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=88.69 E-value=0.22 Score=52.78 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 007178 325 CFGMLGPNGAGKTTFISMMIGIT 347 (614)
Q Consensus 325 i~~LlG~NGaGKTTll~~l~Gl~ 347 (614)
.++++|+.|+|||||++.|+|..
T Consensus 10 ~I~vvG~~~~GKSTLi~~L~~~~ 32 (403)
T 3sjy_A 10 NIGVVGHVDHGKTTLVQAITGIW 32 (403)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 57999999999999999999954
No 500
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=88.62 E-value=0.26 Score=50.20 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=20.2
Q ss_pred cEEEEECCCCCcHHHHHHHHhCC
Q 007178 324 ECFGMLGPNGAGKTTFISMMIGI 346 (614)
Q Consensus 324 ei~~LlG~NGaGKTTll~~l~Gl 346 (614)
--++|+|+.|+|||||++.+.+-
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999998775
Done!