BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007179
(614 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A8R|A Chain A, The Structure Of The N-Terminal Regulatory Domain Of A
Plant Nadph Oxidase
pdb|3A8R|B Chain B, The Structure Of The N-Terminal Regulatory Domain Of A
Plant Nadph Oxidase
Length = 179
Score = 163 bits (413), Expect = 2e-40, Method: Composition-based stats.
Identities = 72/119 (60%), Positives = 104/119 (87%)
Query: 5 SKDFAVELFDALTRRRNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRIT 64
S +FAV++FD+L R+R I +TKD+L++F++Q++DQ FD+RL+TFFDMVDK+ADGR+T
Sbjct: 57 SDEFAVQMFDSLARKRGIVKQVLTKDELKDFYEQLTDQGFDNRLRTFFDMVDKNADGRLT 116
Query: 65 EDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQS 123
+EV+EII+LSASANKLS I+++A+EY ALIMEELDP +LG I +++LE LLLQ+P+++
Sbjct: 117 AEEVKEIIALSASANKLSKIKERADEYTALIMEELDPTNLGYIEMEDLEALLLQSPSEA 175
>pdb|3A1F|A Chain A, The Crystal Structure Of Nadph Binding Domain Of
Gp91(Phox)
Length = 186
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 28/39 (71%)
Query: 509 VLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDI 547
+ +DGP+G ++D YEVV+LVG GIG TP SI+K +
Sbjct: 1 IAVDGPFGTASEDVFSYEVVMLVGAGIGVTPFASILKSV 39
>pdb|5PAL|A Chain A, Crystal Structure Of The Unique Parvalbumin Component From
Muscle Of The Leopard Shark (Triakis Semifasciata). The
First X-Ray Study Of An Alpha-Parvalbumin
Length = 109
Score = 36.2 bits (82), Expect = 0.050, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 45 DSRLQTFFDMVDKDADGRITEDEVREIIS-LSASANKLSNIQKQAEEYAALIMEELDPDH 103
D++++ F+++DKD G I E+E++ ++ SA L++ + +A ++ D DH
Sbjct: 40 DAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKA------LLAAGDSDH 93
Query: 104 LGCIMIDNLEMLLLQA 119
G I D ++ QA
Sbjct: 94 DGKIGADEFAKMVAQA 109
>pdb|1TCF|A Chain A, Crystal Structure Of Calcium-Saturated Rabbit Skeletal
Troponin C
pdb|1TN4|A Chain A, Four Calcium Tnc
pdb|2TN4|A Chain A, Four Calcium Tnc
Length = 159
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 9/107 (8%)
Query: 30 DQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAE 89
DQ E +S++ + + FDM D D G I+ E+ ++ + Q +
Sbjct: 2 DQQAEARSYLSEEMI-AEFKAAFDMFDADGGGDISVKELGTVMRMLG--------QTPTK 52
Query: 90 EYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQSVKGGESRNLSHML 136
E I+EE+D D G I + +++++ + KG L+ +
Sbjct: 53 EELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELAELF 99
>pdb|1TNW|A Chain A, Nmr Solution Structure Of Calcium Saturated Skeletal
Muscle Troponin C
pdb|1TNX|A Chain A, Nmr Solution Structure Of Calcium Saturated Skeletal
Muscle Troponin C
Length = 162
Score = 33.1 bits (74), Expect = 0.44, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Query: 46 SRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLG 105
+ + FDM D D G I+ E+ ++ + Q +E I+EE+D D G
Sbjct: 20 AEFKAAFDMFDADGGGDISTKELGTVMRMLG--------QNPTKEELDAIIEEVDEDGSG 71
Query: 106 CIMIDNLEMLLLQAPAQSVKGGESRNLSH 134
I + +++++ + KG L++
Sbjct: 72 TIDFEEFLVMMVRQMKEDAKGKSEEELAN 100
>pdb|1YTZ|C Chain C, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Activated State
pdb|1YV0|C Chain C, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Free State
pdb|1NCX|A Chain A, Troponin C
pdb|1NCY|A Chain A, Troponin-C, Complex With Manganese
pdb|1NCZ|A Chain A, Troponin C
pdb|1TOP|A Chain A, Structure Of Chicken Skeletal Muscle Troponin-C At 1.78
Angstroms Resolution
Length = 162
Score = 33.1 bits (74), Expect = 0.44, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Query: 46 SRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLG 105
+ + FDM D D G I+ E+ ++ + Q +E I+EE+D D G
Sbjct: 20 AEFKAAFDMFDADGGGDISTKELGTVMRMLG--------QNPTKEELDAIIEEVDEDGSG 71
Query: 106 CIMIDNLEMLLLQAPAQSVKGGESRNLSH 134
I + +++++ + KG L++
Sbjct: 72 TIDFEEFLVMMVRQMKEDAKGKSEEELAN 100
>pdb|2W49|0 Chain 0, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|3 Chain 3, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|6 Chain 6, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|9 Chain 9, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4U|0 Chain 0, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|3 Chain 3, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|6 Chain 6, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|9 Chain 9, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
Length = 159
Score = 33.1 bits (74), Expect = 0.44, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Query: 46 SRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLG 105
+ + FDM D D G I+ E+ ++ + Q +E I+EE+D D G
Sbjct: 17 AEFKAAFDMFDADGGGDISTKELGTVMRMLG--------QNPTKEELDAIIEEVDEDGSG 68
Query: 106 CIMIDNLEMLLLQAPAQSVKGGESRNLSH 134
I + +++++ + KG L++
Sbjct: 69 TIDFEEFLVMMVRQMKEDAKGKSEEELAN 97
>pdb|4TNC|A Chain A, Refined Structure Of Chicken Skeletal Muscle Troponin C In
The Two-Calcium State At 2-Angstroms Resolution
Length = 162
Score = 33.1 bits (74), Expect = 0.52, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 8/88 (9%)
Query: 46 SRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLG 105
+ + FDM D D G I+ E+ ++ + Q +E I+EE+D D G
Sbjct: 20 AEFKAAFDMFDADGGGDISTKELGTVMRMLG--------QNPTKEELDAIIEEVDEDGSG 71
Query: 106 CIMIDNLEMLLLQAPAQSVKGGESRNLS 133
I + +++++ + KG L+
Sbjct: 72 TIDFEEFLVMMVRQMKEDAKGKSEEELA 99
>pdb|1A2X|A Chain A, Complex Of Troponin C With A 47 Residue (1-47) Fragment Of
Troponin I
Length = 159
Score = 32.7 bits (73), Expect = 0.53, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 9/104 (8%)
Query: 30 DQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAE 89
DQ E +S++ + + FDM D D G I+ E+ ++ + Q +
Sbjct: 2 DQQAEARSYLSEEMI-AEFKAAFDMFDADGGGDISVKELGTVMRMLG--------QTPTK 52
Query: 90 EYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQSVKGGESRNLS 133
E I+EE+D D G I + +++++ + KG L+
Sbjct: 53 EELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELA 96
>pdb|3PAT|A Chain A, Comparison Between The Crystal And The Solution Structures
Of The Ef Hand Parvalbumin
pdb|2PAS|A Chain A, Comparison Between The Crystal And The Solution Structures
Of The Ef Hand Parvalbumin
pdb|1PVA|A Chain A, Comparison Between The Crystal And The Solution Structures
Of The Ef Hand Parvalbumin (alpha Component From Pike
Muscle)
pdb|1PVA|B Chain B, Comparison Between The Crystal And The Solution Structures
Of The Ef Hand Parvalbumin (alpha Component From Pike
Muscle)
Length = 110
Score = 32.7 bits (73), Expect = 0.59, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 48 LQTFFDMVDKDADGRITEDEVREII-SLSASANKLSNIQKQAEEYAALIMEELDPDHLGC 106
++ F +D DA G I E+E++ ++ S +A L++ + +A ++ D D G
Sbjct: 44 VKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKA------FLKAADKDGDGK 97
Query: 107 IMIDNLEMLLLQA 119
I ID E L+ +A
Sbjct: 98 IGIDEFETLVHEA 110
>pdb|5TNC|A Chain A, Refined Crystal Structure Of Troponin C From Turkey
Skeletal Muscle At 2.0 Angstroms Resolution
Length = 162
Score = 32.3 bits (72), Expect = 0.72, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 8/87 (9%)
Query: 46 SRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLG 105
+ + FDM D D G I+ E+ ++ + Q +E I+EE+D D G
Sbjct: 20 AEFKAAFDMFDADGGGDISTKELGTVMRMLG--------QNPTKEELDAIIEEVDEDGSG 71
Query: 106 CIMIDNLEMLLLQAPAQSVKGGESRNL 132
I + +++++ + KG L
Sbjct: 72 TIDFEEFLVMMVRQMKEDAKGKSEEEL 98
>pdb|1S6I|A Chain A, Ca2+-Regulatory Region (Cld) From Soybean
Calcium-Dependent Protein Kinase-Alpha (Cdpk) In The
Presence Of Ca2+ And The Junction Domain (Jd)
Length = 188
Score = 32.3 bits (72), Expect = 0.73, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 26 TITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQ 85
TIT D+L++ ++ + +S ++ D D D G I + E I+ + NKL
Sbjct: 26 TITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTI---DYGEFIAATVHLNKL---- 78
Query: 86 KQAEEYAALIMEELDPDHLGCIMIDNLE 113
+ EE D D G I +D ++
Sbjct: 79 -EREENLVSAFSYFDKDGSGYITLDEIQ 105
>pdb|2OBH|A Chain A, Centrin-Xpc Peptide
pdb|2OBH|B Chain B, Centrin-Xpc Peptide
Length = 143
Score = 32.3 bits (72), Expect = 0.84, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 29/67 (43%)
Query: 6 KDFAVELFDALTRRRNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITE 65
KD E+ A + + I+ L+ ++ + D LQ D D+D DG ++E
Sbjct: 75 KDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSE 134
Query: 66 DEVREII 72
E I+
Sbjct: 135 QEFLRIM 141
>pdb|2A4J|A Chain A, Solution Structure Of The C-Terminal Domain (T94-Y172)
Of The Human Centrin 2 In Complex With A 17 Residues
Peptide (P1-Xpc) From Xeroderma Pigmentosum Group C
Protein
pdb|2K2I|A Chain A, Nmr Solution Structure Of The C-Terminal Domain
(T94-Y172) Of The Human Centrin 2 In Complex With A
Repeat Sequence Of Human Sfi1 (R641-T660)
Length = 79
Score = 32.3 bits (72), Expect = 0.86, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 29/67 (43%)
Query: 6 KDFAVELFDALTRRRNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITE 65
KD E+ A + + I+ L+ ++ + D LQ D D+D DG ++E
Sbjct: 7 KDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSE 66
Query: 66 DEVREII 72
E I+
Sbjct: 67 QEFLRIM 73
>pdb|2KYC|A Chain A, Solution Structure Of Ca-Free Chicken Parvalbumin 3 (Cpv3)
pdb|2KYF|A Chain A, Solution Structure Of Calcium-Bound Cpv3
Length = 108
Score = 32.0 bits (71), Expect = 0.90, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 1 MNKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQISDQS---FDSRLQTFFDMVDK 57
M+K S E+F L N Q I +D+L+ F + + S +TF D
Sbjct: 35 MSKKSSSQLKEIFRILD---NDQSGFIEEDELKYFLQRFESGARVLTASETKTFLAAADH 91
Query: 58 DADGRITEDEVREII 72
D DG+I +E +E++
Sbjct: 92 DGDGKIGAEEFQEMV 106
>pdb|1M39|A Chain A, Solution Structure Of The C-Terminal Fragment (F86-I165)
Of The Human Centrin 2 In Calcium Saturated Form
Length = 89
Score = 32.0 bits (71), Expect = 0.97, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 29/67 (43%)
Query: 6 KDFAVELFDALTRRRNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITE 65
KD E+ A + + I+ L+ ++ + D LQ D D+D DG ++E
Sbjct: 17 KDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSE 76
Query: 66 DEVREII 72
E I+
Sbjct: 77 QEFLRIM 83
>pdb|1OMD|A Chain A, Structure Of Oncomodulin Refined At 1.85 Angstroms
Resolution. An Example Of Extensive Molecular
Aggregation Via Ca2+
pdb|1RRO|A Chain A, Refinement Of Recombinant Oncomodulin At 1.30 Angstroms
Resolution
pdb|2NLN|A Chain A, Solution Structure Of Calcium-Free Rat Beta-Parvalbumin
Length = 108
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 5 SKDFAVELFDALTRRRNIQGDTITKDQLREFWDQISDQS---FDSRLQTFFDMVDKDADG 61
SK A ++ D N Q + D+L+ F + + +S ++ D D D DG
Sbjct: 36 SKMSASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADNDGDG 95
Query: 62 RITEDEVREII 72
+I DE +E++
Sbjct: 96 KIGADEFQEMV 106
>pdb|3KF9|A Chain A, Crystal Structure Of The SdcenSKMLCK COMPLEX
pdb|3KF9|C Chain C, Crystal Structure Of The SdcenSKMLCK COMPLEX
Length = 149
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 3 KDSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGR 62
+DS++ E+ A + + I+ L+ ++ + D LQ D D+D DG
Sbjct: 77 RDSRE---EIMKAFRLFDDDETGKISFKNLKRVAKELGENMTDEELQEMIDEADRDGDGE 133
Query: 63 ITEDEVREII 72
+ E+E I+
Sbjct: 134 VNEEEFFRIM 143
>pdb|2GGM|A Chain A, Human Centrin 2 Xeroderma Pigmentosum Group C Protein
Complex
pdb|2GGM|B Chain B, Human Centrin 2 Xeroderma Pigmentosum Group C Protein
Complex
Length = 172
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 28/66 (42%)
Query: 6 KDFAVELFDALTRRRNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITE 65
KD E+ A + + I+ L+ ++ + D LQ D D+D DG ++E
Sbjct: 100 KDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEXIDEADRDGDGEVSE 159
Query: 66 DEVREI 71
E I
Sbjct: 160 QEFLRI 165
>pdb|3OZU|A Chain A, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Miconazole
pdb|3OZV|B Chain B, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Econazole
pdb|3OZV|A Chain A, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Econazole
pdb|3OZW|A Chain A, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Ketoconazole
pdb|3OZW|B Chain B, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Ketoconazole
Length = 403
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 19/118 (16%)
Query: 431 YKSGQY--MFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRTLGDWTRQLRTVFSEVCRPP 488
++ GQY + ++ A+ + +S++ P+ + ++ G + P
Sbjct: 185 FEPGQYTSVAIDVPALGLQQIRQYSLSDMPNGRSYRISVKREGGGPQ------------P 232
Query: 489 PNGISGLLRAEGHNNPDF-PRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVK 545
P +S LL H++ + +V + PYG+ D ++L+ G+G TPM+S++K
Sbjct: 233 PGYVSNLL----HDHVNVGDQVKLAAPYGSFHIDVDAKTPIVLISGGVGLTPMVSMLK 286
>pdb|1CQX|A Chain A, Crystal Structure Of The Flavohemoglobin From Alcaligenes
Eutrophus At 1.75 A Resolution
pdb|1CQX|B Chain B, Crystal Structure Of The Flavohemoglobin From Alcaligenes
Eutrophus At 1.75 A Resolution
Length = 403
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 19/118 (16%)
Query: 431 YKSGQY--MFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRTLGDWTRQLRTVFSEVCRPP 488
++ GQY + ++ A+ + +S++ P+ + ++ G + P
Sbjct: 185 FEPGQYTSVAIDVPALGLQQIRQYSLSDMPNGRTYRISVKREGGGPQ------------P 232
Query: 489 PNGISGLLRAEGHNNPDF-PRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVK 545
P +S LL H++ + +V + PYG+ D ++L+ G+G TPM+S++K
Sbjct: 233 PGYVSNLL----HDHVNVGDQVKLAAPYGSFHIDVDAKTPIVLISGGVGLTPMVSMLK 286
>pdb|3AW8|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermus Thermophilus Hb8
pdb|3AW8|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Synthetase From Thermus Thermophilus Hb8
Length = 369
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 72 ISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNL---EMLLLQAPAQSVKGGE 128
+SL+ + +QK+AE YA ME L D++G + ++ E LL A V
Sbjct: 210 LSLAPAPGASEALQKKAEAYALRAMEAL--DYVGVLALEFFQVGEELLFNEMAPRV---- 263
Query: 129 SRNLSHMLSQKLKPTQFDNPIR 150
N H + + +QF+N +R
Sbjct: 264 -HNSGHWTIEGAETSQFENHLR 284
>pdb|3VO2|A Chain A, Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+
Reductase Iii
pdb|3VO2|B Chain B, Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+
Reductase Iii
Length = 310
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 11/36 (30%)
Query: 282 KYEPMEPYFG-----------DQPKNYWHFVKSVEG 306
KY+P EPY G D P WH V S EG
Sbjct: 27 KYKPKEPYVGRCLSNTRITGDDAPGETWHMVFSTEG 62
>pdb|2KSZ|A Chain A, The Solution Structure Of The Magnesium Bound Soybean
Calmod Isoform 4 N-Domain
Length = 76
Score = 29.6 bits (65), Expect = 4.8, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 10/68 (14%)
Query: 52 FDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDN 111
F + DKD DG IT +E+ +I S Q EE ++ E+D D G I D
Sbjct: 16 FGLFDKDGDGCITVEELATVIR--------SLDQNPTEEELQDMISEVDADGNGTIEFD- 66
Query: 112 LEMLLLQA 119
E L L A
Sbjct: 67 -EFLSLMA 73
>pdb|2ROA|A Chain A, Solution Structure Of Calcium Bound Soybean Calmodulin
Isoform 4 N-Terminal Domain
Length = 79
Score = 29.6 bits (65), Expect = 4.8, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 10/68 (14%)
Query: 52 FDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDN 111
F + DKD DG IT +E+ +I S Q EE ++ E+D D G I D
Sbjct: 16 FGLFDKDGDGCITVEELATVIR--------SLDQNPTEEELQDMISEVDADGNGTIEFD- 66
Query: 112 LEMLLLQA 119
E L L A
Sbjct: 67 -EFLSLMA 73
>pdb|2L1W|A Chain A, The Solution Structure Of Soybean Calmodulin Isoform 4
Complexed With The Vacuolar Calcium Atpase Bca1 Peptide
Length = 149
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 10/68 (14%)
Query: 52 FDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDN 111
F + DKD DG IT +E+ +I S Q EE ++ E+D D G I D
Sbjct: 16 FGLFDKDGDGCITVEELATVIR--------SLDQNPTEEELQDMISEVDADGNGTIEFD- 66
Query: 112 LEMLLLQA 119
E L L A
Sbjct: 67 -EFLSLMA 73
>pdb|3L2D|A Chain A, Glycocyamine Kinase, Beta-Beta Homodimer From Marine
Worm Namalycastis Sp.
pdb|3L2D|B Chain B, Glycocyamine Kinase, Beta-Beta Homodimer From Marine
Worm Namalycastis Sp.
pdb|3L2D|C Chain C, Glycocyamine Kinase, Beta-Beta Homodimer From Marine
Worm Namalycastis Sp.
pdb|3L2D|D Chain D, Glycocyamine Kinase, Beta-Beta Homodimer From Marine
Worm Namalycastis Sp.
pdb|3L2E|B Chain B, Glycocyamine Kinase, Alpha-Beta Heterodimer From Marine
Worm Namalycastis Sp.
pdb|3L2E|D Chain D, Glycocyamine Kinase, Alpha-Beta Heterodimer From Marine
Worm Namalycastis Sp.
pdb|3L2F|A Chain A, Glycocyamine Kinase, Beta-Beta Homodimer From Marine
Worm Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|B Chain B, Glycocyamine Kinase, Beta-Beta Homodimer From Marine
Worm Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|C Chain C, Glycocyamine Kinase, Beta-Beta Homodimer From Marine
Worm Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|D Chain D, Glycocyamine Kinase, Beta-Beta Homodimer From Marine
Worm Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|E Chain E, Glycocyamine Kinase, Beta-Beta Homodimer From Marine
Worm Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|F Chain F, Glycocyamine Kinase, Beta-Beta Homodimer From Marine
Worm Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|G Chain G, Glycocyamine Kinase, Beta-Beta Homodimer From Marine
Worm Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|H Chain H, Glycocyamine Kinase, Beta-Beta Homodimer From Marine
Worm Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|I Chain I, Glycocyamine Kinase, Beta-Beta Homodimer From Marine
Worm Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|J Chain J, Glycocyamine Kinase, Beta-Beta Homodimer From Marine
Worm Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|K Chain K, Glycocyamine Kinase, Beta-Beta Homodimer From Marine
Worm Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|L Chain L, Glycocyamine Kinase, Beta-Beta Homodimer From Marine
Worm Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|M Chain M, Glycocyamine Kinase, Beta-Beta Homodimer From Marine
Worm Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|N Chain N, Glycocyamine Kinase, Beta-Beta Homodimer From Marine
Worm Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|O Chain O, Glycocyamine Kinase, Beta-Beta Homodimer From Marine
Worm Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|P Chain P, Glycocyamine Kinase, Beta-Beta Homodimer From Marine
Worm Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|Q Chain Q, Glycocyamine Kinase, Beta-Beta Homodimer From Marine
Worm Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|R Chain R, Glycocyamine Kinase, Beta-Beta Homodimer From Marine
Worm Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2G|A Chain A, Glycocyamine Kinase, Beta-Beta Homodimer From Marine
Worm Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|B Chain B, Glycocyamine Kinase, Beta-Beta Homodimer From Marine
Worm Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|C Chain C, Glycocyamine Kinase, Beta-Beta Homodimer From Marine
Worm Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|D Chain D, Glycocyamine Kinase, Beta-Beta Homodimer From Marine
Worm Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|E Chain E, Glycocyamine Kinase, Beta-Beta Homodimer From Marine
Worm Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|F Chain F, Glycocyamine Kinase, Beta-Beta Homodimer From Marine
Worm Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|G Chain G, Glycocyamine Kinase, Beta-Beta Homodimer From Marine
Worm Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|H Chain H, Glycocyamine Kinase, Beta-Beta Homodimer From Marine
Worm Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|I Chain I, Glycocyamine Kinase, Beta-Beta Homodimer From Marine
Worm Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|J Chain J, Glycocyamine Kinase, Beta-Beta Homodimer From Marine
Worm Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|K Chain K, Glycocyamine Kinase, Beta-Beta Homodimer From Marine
Worm Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|L Chain L, Glycocyamine Kinase, Beta-Beta Homodimer From Marine
Worm Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|M Chain M, Glycocyamine Kinase, Beta-Beta Homodimer From Marine
Worm Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|N Chain N, Glycocyamine Kinase, Beta-Beta Homodimer From Marine
Worm Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|O Chain O, Glycocyamine Kinase, Beta-Beta Homodimer From Marine
Worm Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|P Chain P, Glycocyamine Kinase, Beta-Beta Homodimer From Marine
Worm Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|Q Chain Q, Glycocyamine Kinase, Beta-Beta Homodimer From Marine
Worm Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|R Chain R, Glycocyamine Kinase, Beta-Beta Homodimer From Marine
Worm Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2
Length = 390
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 9 AVELFDALTRRRNIQGDTITKDQLREFWDQISDQ--SFDSRLQTFFD 53
A + F L++ N+ +TK+ ++WD+++ +FD +QT D
Sbjct: 27 AADNFPDLSKHNNVMASQLTKELYEKYWDKVTPNGVTFDKCIQTGVD 73
>pdb|3TQT|A Chain A, Structure Of The D-Alanine-D-Alanine Ligase From Coxiella
Burnetii
pdb|3TQT|B Chain B, Structure Of The D-Alanine-D-Alanine Ligase From Coxiella
Burnetii
Length = 372
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 10/88 (11%)
Query: 61 GRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLG-CIMIDNLEMLLLQA 119
G+ TE E IS+ ++ N ++ + + A ++ + DH+G +ID EM L +
Sbjct: 13 GQSTEHE----ISIQSAKNIVNTL-----DAAKYLISVIFIDHVGRWYLIDQPEMFLAHS 63
Query: 120 PAQSVKGGESRNLSHMLSQKLKPTQFDN 147
P VK G +R ++ KP Q N
Sbjct: 64 PDHLVKEGSARPITIAFGDAAKPWQSLN 91
>pdb|2BEC|A Chain A, Crystal Structure Of Chp2 In Complex With Its Binding
Region In Nhe1 And Insights Into The Mechanism Of Ph
Regulation
Length = 202
Score = 28.9 bits (63), Expect = 9.0, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 29 KDQLREFWDQISDQSFDSR---LQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQ 85
+D+ E D + +SR L F + D D DG+I+ E+ +++ L + +
Sbjct: 94 EDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVG---VQVTE 150
Query: 86 KQAEEYAALIMEELDPDHLGCI 107
+Q E A ++E D D G +
Sbjct: 151 EQLENIADRTVQEADEDGDGAV 172
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,927,423
Number of Sequences: 62578
Number of extensions: 648691
Number of successful extensions: 1824
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1789
Number of HSP's gapped (non-prelim): 57
length of query: 614
length of database: 14,973,337
effective HSP length: 105
effective length of query: 509
effective length of database: 8,402,647
effective search space: 4276947323
effective search space used: 4276947323
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)