Query 007179
Match_columns 614
No_of_seqs 488 out of 4185
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 20:01:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007179.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007179hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0039 Ferric reductase, NADH 100.0 6.8E-66 1.5E-70 571.6 29.5 491 25-554 3-495 (646)
2 PLN02631 ferric-chelate reduct 100.0 5.6E-50 1.2E-54 440.6 25.7 285 201-551 150-438 (699)
3 PLN02292 ferric-chelate reduct 100.0 2.3E-48 5E-53 428.8 27.6 287 202-551 168-457 (702)
4 PLN02844 oxidoreductase/ferric 100.0 3.4E-46 7.4E-51 412.7 29.8 292 202-551 154-449 (722)
5 COG4097 Predicted ferric reduc 100.0 3E-34 6.5E-39 282.6 22.2 325 213-600 50-393 (438)
6 PRK08051 fre FMN reductase; Va 99.9 3.6E-23 7.7E-28 205.0 18.4 172 404-603 3-190 (232)
7 cd06189 flavin_oxioreductase N 99.9 2.9E-23 6.4E-28 204.7 16.9 170 406-603 1-186 (224)
8 cd06210 MMO_FAD_NAD_binding Me 99.9 1.3E-22 2.9E-27 201.7 17.4 174 404-604 2-197 (236)
9 cd06211 phenol_2-monooxygenase 99.9 3E-22 6.6E-27 199.3 17.8 173 404-603 7-199 (238)
10 cd06212 monooxygenase_like The 99.9 3.9E-22 8.4E-27 197.8 17.8 174 405-605 2-195 (232)
11 cd06209 BenDO_FAD_NAD Benzoate 99.9 6.9E-22 1.5E-26 195.4 18.6 168 405-601 3-187 (228)
12 cd06217 FNR_iron_sulfur_bindin 99.9 6.7E-22 1.5E-26 196.5 18.4 175 403-602 1-195 (235)
13 cd06186 NOX_Duox_like_FAD_NADP 99.9 5.6E-22 1.2E-26 193.6 16.9 127 409-551 2-132 (210)
14 cd06190 T4MO_e_transfer_like T 99.9 5.1E-22 1.1E-26 197.0 16.9 172 409-604 2-192 (232)
15 cd06216 FNR_iron_sulfur_bindin 99.9 8.5E-22 1.9E-26 196.7 18.5 179 392-600 2-202 (243)
16 PRK07609 CDP-6-deoxy-delta-3,4 99.9 4.4E-22 9.5E-27 208.6 17.0 173 403-603 102-294 (339)
17 cd06187 O2ase_reductase_like T 99.9 4.8E-22 1E-26 196.1 16.2 170 408-603 1-186 (224)
18 cd06191 FNR_iron_sulfur_bindin 99.9 1.1E-21 2.4E-26 194.4 18.4 171 407-602 2-191 (231)
19 cd06215 FNR_iron_sulfur_bindin 99.9 1.3E-21 2.8E-26 194.0 17.9 169 407-600 2-189 (231)
20 cd06184 flavohem_like_fad_nad_ 99.9 2.8E-21 6E-26 193.5 19.6 176 403-600 6-202 (247)
21 PRK11872 antC anthranilate dio 99.9 1.4E-21 3E-26 204.3 17.7 170 403-600 106-294 (340)
22 cd06213 oxygenase_e_transfer_s 99.9 2.3E-21 4.9E-26 191.6 17.5 170 405-602 2-190 (227)
23 cd06195 FNR1 Ferredoxin-NADP+ 99.9 1.8E-21 3.8E-26 194.2 16.7 166 407-599 1-185 (241)
24 cd06188 NADH_quinone_reductase 99.9 1.7E-21 3.7E-26 198.8 16.7 172 404-602 10-240 (283)
25 cd06214 PA_degradation_oxidore 99.9 8.2E-21 1.8E-25 189.5 19.2 171 404-599 2-193 (241)
26 PRK10684 HCP oxidoreductase, N 99.9 6.8E-21 1.5E-25 198.7 18.2 171 404-600 10-195 (332)
27 cd06221 sulfite_reductase_like 99.9 7.3E-21 1.6E-25 190.8 17.0 165 408-602 1-185 (253)
28 cd00322 FNR_like Ferredoxin re 99.9 1E-20 2.2E-25 186.3 17.3 160 410-595 2-177 (223)
29 PRK13289 bifunctional nitric o 99.9 2.5E-20 5.4E-25 199.9 20.0 175 402-600 153-351 (399)
30 PRK10926 ferredoxin-NADP reduc 99.9 2E-20 4.3E-25 186.9 17.9 168 403-598 4-189 (248)
31 PLN03116 ferredoxin--NADP+ red 99.8 2E-20 4.4E-25 192.6 17.9 172 404-601 25-248 (307)
32 cd06196 FNR_like_1 Ferredoxin 99.8 2.2E-20 4.9E-25 183.3 17.0 162 405-600 2-179 (218)
33 PRK08221 anaerobic sulfite red 99.8 3E-20 6.6E-25 187.1 18.0 164 404-601 8-185 (263)
34 TIGR02160 PA_CoA_Oxy5 phenylac 99.8 2.8E-20 6E-25 196.0 18.5 169 404-597 2-192 (352)
35 PRK08345 cytochrome-c3 hydroge 99.8 2.8E-20 6.1E-25 190.0 17.7 151 403-579 5-176 (289)
36 PTZ00274 cytochrome b5 reducta 99.8 5.4E-20 1.2E-24 189.3 19.0 174 401-600 50-253 (325)
37 cd06198 FNR_like_3 NAD(P) bind 99.8 3E-20 6.5E-25 182.2 16.2 140 416-579 7-160 (216)
38 PRK00054 dihydroorotate dehydr 99.8 5.7E-20 1.2E-24 184.1 18.4 165 403-602 4-178 (250)
39 cd06183 cyt_b5_reduct_like Cyt 99.8 4.8E-20 1E-24 183.0 17.5 169 407-601 2-192 (234)
40 cd06194 FNR_N-term_Iron_sulfur 99.8 2.6E-20 5.5E-25 183.5 15.4 150 408-582 1-167 (222)
41 cd06197 FNR_like_2 FAD/NAD(P) 99.8 4E-20 8.8E-25 181.3 15.7 168 410-600 2-208 (220)
42 cd06208 CYPOR_like_FNR These f 99.8 9.1E-20 2E-24 186.1 18.2 171 404-600 9-226 (286)
43 cd06219 DHOD_e_trans_like1 FAD 99.8 9.4E-20 2E-24 182.3 17.6 162 407-604 2-176 (248)
44 cd06218 DHOD_e_trans FAD/NAD b 99.8 9.2E-20 2E-24 182.0 16.4 164 408-604 1-177 (246)
45 COG1018 Hmp Flavodoxin reducta 99.8 1.8E-19 4E-24 179.8 18.3 146 402-571 4-166 (266)
46 PRK06222 ferredoxin-NADP(+) re 99.8 1.3E-19 2.8E-24 184.4 17.4 163 406-604 2-177 (281)
47 TIGR02911 sulfite_red_B sulfit 99.8 2.6E-19 5.6E-24 180.2 17.8 162 405-600 7-182 (261)
48 cd06192 DHOD_e_trans_like FAD/ 99.8 1.9E-19 4.2E-24 179.7 16.4 157 408-597 1-169 (243)
49 PTZ00319 NADH-cytochrome B5 re 99.8 2.8E-19 6E-24 183.3 17.0 174 400-600 30-252 (300)
50 PLN03115 ferredoxin--NADP(+) r 99.8 3.3E-19 7.1E-24 185.5 17.5 170 406-601 93-307 (367)
51 PRK05464 Na(+)-translocating N 99.8 3.6E-19 7.8E-24 190.7 16.9 171 404-601 134-363 (409)
52 cd06220 DHOD_e_trans_like2 FAD 99.8 6E-19 1.3E-23 174.9 17.2 154 406-602 1-163 (233)
53 COG0543 UbiB 2-polyprenylpheno 99.8 1E-18 2.2E-23 174.4 17.6 165 405-604 9-190 (252)
54 KOG0534 NADH-cytochrome b-5 re 99.8 9.2E-19 2E-23 173.2 16.4 180 402-607 50-251 (286)
55 TIGR01941 nqrF NADH:ubiquinone 99.8 7.4E-19 1.6E-23 188.0 15.6 170 404-600 130-358 (405)
56 PF08022 FAD_binding_8: FAD-bi 99.8 6.7E-21 1.5E-25 163.7 -1.7 99 405-518 3-104 (105)
57 PRK05802 hypothetical protein; 99.8 2.2E-18 4.9E-23 177.5 16.6 125 404-551 65-198 (320)
58 PLN02252 nitrate reductase [NA 99.8 2.5E-18 5.4E-23 197.0 18.2 174 401-600 632-846 (888)
59 cd06200 SiR_like1 Cytochrome p 99.8 5.7E-18 1.2E-22 169.0 16.8 152 417-600 17-190 (245)
60 PRK05713 hypothetical protein; 99.8 3.3E-18 7.2E-23 176.9 15.4 143 404-572 92-251 (312)
61 TIGR03224 benzo_boxA benzoyl-C 99.8 1.3E-17 2.7E-22 177.8 17.8 167 404-600 143-350 (411)
62 cd06182 CYPOR_like NADPH cytoc 99.7 2.2E-17 4.7E-22 166.6 16.2 153 416-599 15-201 (267)
63 cd06201 SiR_like2 Cytochrome p 99.7 8.1E-17 1.8E-21 164.4 18.3 152 402-579 44-220 (289)
64 cd06185 PDR_like Phthalate dio 99.7 6E-17 1.3E-21 158.2 15.5 131 410-566 2-149 (211)
65 PRK12778 putative bifunctional 99.7 8.3E-17 1.8E-21 185.6 17.6 162 406-603 2-176 (752)
66 PRK12779 putative bifunctional 99.7 4.4E-16 9.6E-21 181.0 18.8 172 403-604 648-838 (944)
67 PRK12775 putative trifunctiona 99.7 1.2E-15 2.6E-20 179.0 17.9 164 406-604 2-178 (1006)
68 PTZ00306 NADH-dependent fumara 99.7 1.9E-15 4.1E-20 180.7 18.4 174 401-600 912-1120(1167)
69 KOG0044 Ca2+ sensor (EF-Hand s 99.6 1.9E-15 4.2E-20 141.3 10.3 119 2-124 59-181 (193)
70 cd06193 siderophore_interactin 99.6 3.7E-15 8E-20 147.9 13.0 119 408-550 1-145 (235)
71 KOG0034 Ca2+/calmodulin-depend 99.6 1.5E-14 3.2E-19 135.4 12.4 111 8-123 67-180 (187)
72 COG5126 FRQ1 Ca2+-binding prot 99.5 5.4E-14 1.2E-18 127.1 11.1 103 5-120 54-158 (160)
73 PF01794 Ferric_reduct: Ferric 99.4 1.5E-13 3.2E-18 122.3 7.4 118 212-361 6-124 (125)
74 COG2871 NqrF Na+-transporting 99.4 7.3E-13 1.6E-17 127.0 10.2 179 405-600 136-363 (410)
75 PF00970 FAD_binding_6: Oxidor 99.3 2.9E-12 6.3E-17 109.1 8.6 91 405-518 1-97 (99)
76 KOG0038 Ca2+-binding kinase in 99.3 3.9E-12 8.4E-17 109.7 9.0 110 8-124 72-183 (189)
77 KOG0027 Calmodulin and related 99.3 6.1E-12 1.3E-16 115.8 9.7 110 7-123 8-118 (151)
78 KOG0027 Calmodulin and related 99.3 1.9E-11 4.1E-16 112.6 12.1 95 5-118 42-149 (151)
79 cd06199 SiR Cytochrome p450- l 99.3 4.3E-12 9.4E-17 133.6 8.8 139 428-599 129-294 (360)
80 TIGR01931 cysJ sulfite reducta 99.3 5.3E-12 1.2E-16 141.0 8.6 139 429-600 367-532 (597)
81 PRK06567 putative bifunctional 99.2 5.8E-11 1.3E-15 135.0 14.3 119 405-550 792-915 (1028)
82 cd06203 methionine_synthase_re 99.2 7E-11 1.5E-15 126.1 12.3 133 446-600 171-332 (398)
83 KOG0028 Ca2+-binding protein ( 99.2 6.8E-11 1.5E-15 104.3 9.6 103 8-121 34-137 (172)
84 cd06207 CyPoR_like NADPH cytoc 99.2 1.3E-10 2.8E-15 123.7 11.4 124 446-599 161-315 (382)
85 cd06206 bifunctional_CYPOR The 99.1 1.3E-10 2.9E-15 123.6 9.4 135 431-599 147-315 (384)
86 COG5126 FRQ1 Ca2+-binding prot 99.1 4.1E-10 8.9E-15 102.0 11.0 108 4-123 17-125 (160)
87 PF13499 EF-hand_7: EF-hand do 99.1 3.7E-10 8.1E-15 88.3 8.9 66 47-116 1-66 (66)
88 PTZ00183 centrin; Provisional 99.1 4.2E-10 9E-15 104.3 10.6 104 5-119 15-119 (158)
89 KOG0028 Ca2+-binding protein ( 99.1 5.9E-10 1.3E-14 98.5 9.5 102 6-119 68-171 (172)
90 PRK10953 cysJ sulfite reductas 99.1 3.1E-10 6.6E-15 126.3 8.9 139 429-600 370-535 (600)
91 PTZ00183 centrin; Provisional 99.1 1.2E-09 2.5E-14 101.3 11.2 104 6-121 52-157 (158)
92 PRK06214 sulfite reductase; Pr 99.0 1.2E-09 2.5E-14 119.3 11.8 123 446-598 313-463 (530)
93 PTZ00184 calmodulin; Provision 99.0 1.6E-09 3.4E-14 99.1 10.6 105 4-119 8-113 (149)
94 PTZ00184 calmodulin; Provision 99.0 2.4E-09 5.2E-14 98.0 11.4 100 6-117 46-147 (149)
95 KOG3378 Globins and related he 99.0 1.9E-09 4.2E-14 103.0 8.9 132 403-556 149-293 (385)
96 KOG0031 Myosin regulatory ligh 99.0 4.6E-09 1E-13 92.1 10.1 100 5-117 31-164 (171)
97 cd06204 CYPOR NADPH cytochrome 98.9 4.6E-09 1E-13 112.8 11.2 145 446-599 175-350 (416)
98 cd06202 Nitric_oxide_synthase 98.9 7.1E-09 1.5E-13 111.0 11.7 125 447-600 175-337 (406)
99 cd05022 S-100A13 S-100A13: S-1 98.9 5E-09 1.1E-13 86.4 6.7 67 46-119 8-76 (89)
100 PLN02964 phosphatidylserine de 98.8 2.8E-08 6E-13 109.7 10.4 98 7-120 143-245 (644)
101 cd05027 S-100B S-100B: S-100B 98.7 4.1E-08 8.9E-13 81.0 6.7 70 46-118 8-79 (88)
102 cd05026 S-100Z S-100Z: S-100Z 98.7 4.8E-08 1E-12 81.7 7.1 70 47-119 11-82 (93)
103 PF13499 EF-hand_7: EF-hand do 98.7 6.3E-08 1.4E-12 75.5 6.7 60 9-72 2-66 (66)
104 KOG0037 Ca2+-binding protein, 98.6 1.1E-07 2.3E-12 89.1 8.8 97 8-122 58-156 (221)
105 KOG0036 Predicted mitochondria 98.6 2.2E-07 4.8E-12 94.3 9.0 61 9-73 16-78 (463)
106 KOG0036 Predicted mitochondria 98.5 4.9E-07 1.1E-11 91.8 11.1 101 4-121 48-149 (463)
107 cd05025 S-100A1 S-100A1: S-100 98.5 2.1E-07 4.6E-12 77.8 6.8 72 45-119 8-81 (92)
108 KOG0044 Ca2+ sensor (EF-Hand s 98.5 5E-07 1.1E-11 85.0 9.9 102 6-119 25-129 (193)
109 cd05029 S-100A6 S-100A6: S-100 98.5 2.3E-07 4.9E-12 76.6 6.2 67 47-118 11-79 (88)
110 KOG0037 Ca2+-binding protein, 98.5 6.9E-07 1.5E-11 83.7 9.2 97 6-120 93-190 (221)
111 PF00175 NAD_binding_1: Oxidor 98.5 2.2E-07 4.7E-12 80.3 5.6 71 530-603 1-84 (109)
112 cd05031 S-100A10_like S-100A10 98.5 6.2E-07 1.3E-11 75.3 7.9 72 45-119 7-80 (94)
113 smart00027 EH Eps15 homology d 98.5 7.7E-07 1.7E-11 75.1 8.4 66 45-120 9-74 (96)
114 cd05023 S-100A11 S-100A11: S-1 98.4 5.6E-07 1.2E-11 74.4 6.9 70 46-118 9-80 (89)
115 cd05022 S-100A13 S-100A13: S-1 98.4 7.4E-07 1.6E-11 73.5 6.9 64 6-73 7-74 (89)
116 cd00052 EH Eps15 homology doma 98.4 9.1E-07 2E-11 69.0 7.1 61 49-119 2-62 (67)
117 cd00252 SPARC_EC SPARC_EC; ext 98.4 9.1E-07 2E-11 76.7 7.2 66 44-122 46-111 (116)
118 cd00213 S-100 S-100: S-100 dom 98.4 1.2E-06 2.5E-11 72.7 7.1 72 45-119 7-80 (88)
119 smart00027 EH Eps15 homology d 98.2 4.5E-06 9.7E-11 70.4 7.8 66 2-73 5-71 (96)
120 PF13833 EF-hand_8: EF-hand do 98.2 3.6E-06 7.9E-11 62.7 6.4 49 25-73 3-52 (54)
121 KOG0030 Myosin essential light 98.2 1.3E-05 2.9E-10 69.5 10.2 112 3-123 7-121 (152)
122 KOG0030 Myosin essential light 98.2 6.1E-06 1.3E-10 71.6 8.0 95 9-116 49-149 (152)
123 KOG4666 Predicted phosphate ac 98.2 2.6E-06 5.6E-11 83.7 6.2 104 7-123 259-364 (412)
124 cd05029 S-100A6 S-100A6: S-100 98.2 6.7E-06 1.5E-10 67.9 7.8 68 6-73 6-78 (88)
125 cd05030 calgranulins Calgranul 98.2 4.8E-06 1E-10 68.9 6.9 71 46-119 8-80 (88)
126 cd00051 EFh EF-hand, calcium b 98.2 2.7E-06 5.8E-11 64.5 4.9 61 48-116 2-62 (63)
127 PLN02964 phosphatidylserine de 98.2 3.7E-06 8E-11 93.1 7.8 64 7-74 179-243 (644)
128 cd05027 S-100B S-100B: S-100B 98.2 7.3E-06 1.6E-10 67.6 7.6 64 7-73 8-78 (88)
129 PF13833 EF-hand_8: EF-hand do 98.1 7.7E-06 1.7E-10 60.9 6.9 53 59-118 1-53 (54)
130 cd00051 EFh EF-hand, calcium b 98.1 8.6E-06 1.9E-10 61.6 7.3 60 9-72 2-62 (63)
131 cd05025 S-100A1 S-100A1: S-100 98.1 1.2E-05 2.6E-10 67.2 7.7 65 5-73 7-79 (92)
132 cd00052 EH Eps15 homology doma 98.1 9.3E-06 2E-10 63.2 6.5 58 10-73 2-60 (67)
133 cd05026 S-100Z S-100Z: S-100Z 98.0 2E-05 4.3E-10 65.9 8.0 62 9-73 12-80 (93)
134 PF00036 EF-hand_1: EF hand; 98.0 7.2E-06 1.6E-10 52.3 4.0 27 47-73 1-27 (29)
135 KOG4223 Reticulocalbin, calume 98.0 3.5E-05 7.6E-10 76.6 10.0 102 9-121 115-231 (325)
136 cd05031 S-100A10_like S-100A10 98.0 2.4E-05 5.2E-10 65.7 7.7 62 8-73 9-78 (94)
137 PF00036 EF-hand_1: EF hand; 98.0 9.4E-06 2E-10 51.7 3.8 27 92-118 2-28 (29)
138 KOG4223 Reticulocalbin, calume 98.0 1.7E-05 3.7E-10 78.8 7.3 100 9-124 202-307 (325)
139 COG0369 CysJ Sulfite reductase 98.0 4.2E-05 9.1E-10 84.5 11.1 104 447-572 371-500 (587)
140 KOG0377 Protein serine/threoni 97.9 6.3E-05 1.4E-09 77.0 11.0 101 9-117 466-614 (631)
141 cd00213 S-100 S-100: S-100 dom 97.9 3.1E-05 6.8E-10 64.1 7.3 63 7-73 8-78 (88)
142 KOG0034 Ca2+/calmodulin-depend 97.9 6.4E-05 1.4E-09 70.8 10.1 98 9-121 35-135 (187)
143 PF08030 NAD_binding_6: Ferric 97.9 1.6E-05 3.4E-10 73.5 5.1 28 525-552 1-28 (156)
144 cd05024 S-100A10 S-100A10: A s 97.9 3.2E-05 6.9E-10 63.4 6.1 68 47-118 9-76 (91)
145 KOG0041 Predicted Ca2+-binding 97.9 2.5E-05 5.3E-10 71.9 5.9 65 46-119 99-164 (244)
146 PF14658 EF-hand_9: EF-hand do 97.9 5.1E-05 1.1E-09 57.9 6.4 59 11-73 2-63 (66)
147 cd05023 S-100A11 S-100A11: S-1 97.8 7E-05 1.5E-09 61.9 7.3 62 9-73 11-79 (89)
148 PF14658 EF-hand_9: EF-hand do 97.8 7.1E-05 1.5E-09 57.1 6.7 62 50-118 2-64 (66)
149 cd00252 SPARC_EC SPARC_EC; ext 97.8 7.4E-05 1.6E-09 64.9 7.5 58 7-72 48-106 (116)
150 PRK05419 putative sulfite oxid 97.7 7.8E-05 1.7E-09 71.7 7.2 127 240-399 68-194 (205)
151 cd05030 calgranulins Calgranul 97.7 0.0001 2.2E-09 61.0 6.9 64 10-73 8-78 (88)
152 PRK12309 transaldolase/EF-hand 97.7 0.00012 2.7E-09 77.0 8.6 57 41-118 329-385 (391)
153 KOG1158 NADP/FAD dependent oxi 97.6 0.00014 3E-09 80.4 7.6 58 523-580 489-565 (645)
154 PF13405 EF-hand_6: EF-hand do 97.6 0.00011 2.3E-09 47.8 3.9 27 47-73 1-27 (31)
155 KOG2643 Ca2+ binding protein, 97.5 7E-05 1.5E-09 77.0 4.1 95 23-122 211-318 (489)
156 PF13202 EF-hand_5: EF hand; P 97.5 0.00013 2.9E-09 44.7 3.7 25 48-72 1-25 (25)
157 KOG2562 Protein phosphatase 2 97.5 0.00026 5.5E-09 73.6 7.6 106 7-114 311-420 (493)
158 KOG0031 Myosin regulatory ligh 97.5 0.00051 1.1E-08 60.9 8.1 78 44-123 30-134 (171)
159 PF13202 EF-hand_5: EF hand; P 97.4 0.00026 5.7E-09 43.4 3.5 24 93-116 2-25 (25)
160 PF14788 EF-hand_10: EF hand; 97.3 0.0007 1.5E-08 48.7 6.0 48 26-73 1-48 (51)
161 KOG4065 Uncharacterized conser 97.3 0.00077 1.7E-08 56.5 6.9 72 44-115 65-142 (144)
162 KOG0041 Predicted Ca2+-binding 97.3 0.00099 2.2E-08 61.6 8.1 94 9-112 101-197 (244)
163 cd05024 S-100A10 S-100A10: A s 97.3 0.0013 2.9E-08 53.9 7.7 64 9-73 7-75 (91)
164 COG2717 Predicted membrane pro 97.2 0.00098 2.1E-08 63.2 7.4 123 244-399 72-194 (209)
165 PF12763 EF-hand_4: Cytoskelet 97.2 0.0012 2.7E-08 56.0 7.1 63 44-117 8-70 (104)
166 PF12763 EF-hand_4: Cytoskelet 97.1 0.0025 5.4E-08 54.2 7.7 66 2-73 5-70 (104)
167 COG2375 ViuB Siderophore-inter 96.9 0.022 4.7E-07 56.4 14.0 125 402-550 16-168 (265)
168 PF13405 EF-hand_6: EF-hand do 96.9 0.0013 2.8E-08 42.6 3.7 27 92-118 2-28 (31)
169 KOG0377 Protein serine/threoni 96.9 0.0022 4.7E-08 66.0 6.7 63 7-73 547-614 (631)
170 KOG1159 NADP-dependent flavopr 96.8 0.003 6.4E-08 66.4 6.8 84 441-550 363-457 (574)
171 PRK12309 transaldolase/EF-hand 96.8 0.0026 5.6E-08 67.2 6.5 51 6-73 333-384 (391)
172 KOG2643 Ca2+ binding protein, 96.7 0.0035 7.6E-08 64.8 6.6 97 10-122 236-350 (489)
173 KOG0040 Ca2+-binding actin-bun 96.7 0.0052 1.1E-07 71.7 8.6 100 6-117 2253-2360(2399)
174 KOG4251 Calcium binding protei 96.6 0.0029 6.3E-08 60.2 5.0 71 45-120 100-170 (362)
175 PF14788 EF-hand_10: EF hand; 96.5 0.0083 1.8E-07 43.2 5.5 49 62-118 1-49 (51)
176 PF10591 SPARC_Ca_bdg: Secrete 96.4 0.0036 7.7E-08 54.2 3.9 61 44-114 52-112 (113)
177 KOG3866 DNA-binding protein of 96.4 0.01 2.2E-07 58.5 7.1 92 25-116 222-322 (442)
178 PF08021 FAD_binding_9: Sidero 96.2 0.031 6.7E-07 48.8 8.7 89 407-518 1-117 (117)
179 KOG0751 Mitochondrial aspartat 96.1 0.03 6.4E-07 58.8 9.6 99 22-122 85-211 (694)
180 KOG4347 GTPase-activating prot 95.6 0.026 5.6E-07 61.5 6.9 58 6-68 554-612 (671)
181 KOG4251 Calcium binding protei 95.4 0.018 4E-07 54.9 4.4 62 5-70 99-164 (362)
182 smart00054 EFh EF-hand, calciu 95.3 0.021 4.6E-07 35.0 3.2 27 92-118 2-28 (29)
183 smart00054 EFh EF-hand, calciu 95.2 0.025 5.4E-07 34.7 3.2 26 48-73 2-27 (29)
184 KOG0046 Ca2+-binding actin-bun 95.1 0.058 1.3E-06 57.2 7.1 67 47-119 20-86 (627)
185 KOG0751 Mitochondrial aspartat 95.0 0.1 2.3E-06 54.9 8.5 100 8-119 34-137 (694)
186 PF10591 SPARC_Ca_bdg: Secrete 94.7 0.02 4.4E-07 49.6 2.3 59 6-70 53-112 (113)
187 KOG0040 Ca2+-binding actin-bun 94.3 0.066 1.4E-06 63.1 5.6 72 47-120 2254-2326(2399)
188 PF09279 EF-hand_like: Phospho 92.8 0.52 1.1E-05 38.1 7.2 67 47-120 1-71 (83)
189 PF09069 EF-hand_3: EF-hand; 92.6 0.91 2E-05 37.4 8.2 73 45-122 2-79 (90)
190 KOG0169 Phosphoinositide-speci 92.6 0.55 1.2E-05 52.6 9.2 99 5-119 134-233 (746)
191 KOG4065 Uncharacterized conser 92.4 0.45 9.7E-06 40.3 6.3 56 11-70 71-141 (144)
192 KOG0038 Ca2+-binding kinase in 91.2 0.36 7.9E-06 42.7 4.7 74 38-121 66-139 (189)
193 KOG3555 Ca2+-binding proteogly 90.3 0.3 6.6E-06 49.3 3.9 63 45-119 249-311 (434)
194 KOG0046 Ca2+-binding actin-bun 90.0 0.82 1.8E-05 48.9 6.9 62 8-73 20-84 (627)
195 KOG4578 Uncharacterized conser 89.8 0.17 3.7E-06 50.6 1.7 69 47-122 334-402 (421)
196 PF09279 EF-hand_like: Phospho 89.8 0.86 1.9E-05 36.9 5.6 61 9-73 2-68 (83)
197 PLN02952 phosphoinositide phos 88.4 2.6 5.7E-05 47.1 9.9 91 25-118 15-110 (599)
198 KOG1955 Ral-GTPase effector RA 87.9 0.85 1.8E-05 48.2 5.3 66 3-74 227-293 (737)
199 KOG2562 Protein phosphatase 2 87.7 2.1 4.5E-05 45.3 8.0 100 10-114 142-249 (493)
200 KOG0039 Ferric reductase, NADH 87.6 2.2 4.7E-05 48.8 8.8 64 6-73 17-88 (646)
201 PF08414 NADPH_Ox: Respiratory 86.6 1.1 2.3E-05 37.2 4.1 57 9-73 32-91 (100)
202 PF05042 Caleosin: Caleosin re 86.6 5.7 0.00012 36.7 9.2 68 45-115 95-163 (174)
203 KOG1707 Predicted Ras related/ 84.6 2.7 5.9E-05 46.0 7.2 35 88-122 313-347 (625)
204 KOG2243 Ca2+ release channel ( 83.1 1.6 3.6E-05 51.2 4.9 63 51-122 4062-4124(5019)
205 KOG4578 Uncharacterized conser 79.9 1.3 2.8E-05 44.6 2.5 61 9-73 335-397 (421)
206 KOG0169 Phosphoinositide-speci 79.8 15 0.00031 41.7 10.8 99 7-119 172-275 (746)
207 KOG1029 Endocytic adaptor prot 79.5 1.7 3.7E-05 48.5 3.4 61 46-117 195-256 (1118)
208 PF05517 p25-alpha: p25-alpha 75.6 13 0.00028 34.1 7.6 68 49-122 2-73 (154)
209 KOG4666 Predicted phosphate ac 72.7 6.7 0.00014 39.7 5.2 68 45-119 258-325 (412)
210 PF05042 Caleosin: Caleosin re 71.9 15 0.00033 34.0 7.0 59 10-73 99-165 (174)
211 PF05517 p25-alpha: p25-alpha 70.5 36 0.00078 31.2 9.3 65 9-73 1-68 (154)
212 KOG3555 Ca2+-binding proteogly 67.3 4.9 0.00011 40.9 3.0 57 9-73 252-309 (434)
213 KOG1029 Endocytic adaptor prot 66.8 6.5 0.00014 44.2 4.1 59 9-73 197-256 (1118)
214 KOG1955 Ral-GTPase effector RA 66.2 17 0.00036 39.0 6.7 66 47-122 232-297 (737)
215 PF09068 EF-hand_2: EF hand; 63.7 1E+02 0.0023 27.1 11.2 102 10-117 3-124 (127)
216 KOG0035 Ca2+-binding actin-bun 62.8 32 0.00069 40.1 8.7 95 8-114 748-848 (890)
217 PF08414 NADPH_Ox: Respiratory 60.2 46 0.001 27.8 6.9 66 46-121 30-95 (100)
218 KOG4347 GTPase-activating prot 57.3 18 0.00038 40.3 5.3 59 45-112 554-612 (671)
219 KOG0042 Glycerol-3-phosphate d 56.2 17 0.00036 39.9 4.8 65 47-119 594-658 (680)
220 PF14513 DAG_kinase_N: Diacylg 54.6 44 0.00096 29.9 6.5 70 25-103 6-82 (138)
221 PF09842 DUF2069: Predicted me 53.0 1.5E+02 0.0032 25.4 9.6 52 247-330 54-105 (109)
222 KOG0042 Glycerol-3-phosphate d 46.1 43 0.00092 36.9 5.9 61 9-73 595-656 (680)
223 PF02761 Cbl_N2: CBL proto-onc 45.5 1.5E+02 0.0033 24.1 7.5 62 9-74 9-70 (85)
224 PF13706 PepSY_TM_3: PepSY-ass 45.1 23 0.0005 23.8 2.5 20 245-264 4-23 (37)
225 PF11116 DUF2624: Protein of u 44.8 1.3E+02 0.0027 24.6 7.0 70 25-99 13-82 (85)
226 TIGR01848 PHA_reg_PhaR polyhyd 43.9 56 0.0012 27.7 5.1 69 53-123 10-82 (107)
227 PF07879 PHB_acc_N: PHB/PHA ac 43.4 21 0.00046 27.1 2.3 21 53-73 10-30 (64)
228 KOG0035 Ca2+-binding actin-bun 43.3 74 0.0016 37.3 7.6 91 30-123 728-821 (890)
229 PF12174 RST: RCD1-SRO-TAF4 (R 42.2 23 0.00051 27.7 2.5 46 25-73 7-52 (70)
230 KOG4286 Dystrophin-like protei 42.2 36 0.00078 38.5 4.7 105 10-123 473-585 (966)
231 cd02977 ArsC_family Arsenate R 41.9 74 0.0016 26.7 5.8 56 61-125 34-92 (105)
232 KOG0506 Glutaminase (contains 41.8 76 0.0016 34.2 6.8 92 10-106 89-197 (622)
233 PF08726 EFhand_Ca_insen: Ca2+ 41.3 33 0.00072 26.7 3.2 30 43-73 3-32 (69)
234 PF14358 DUF4405: Domain of un 41.2 27 0.00059 26.5 2.7 25 243-267 39-63 (64)
235 KOG4403 Cell surface glycoprot 41.1 32 0.0007 36.2 3.9 84 25-119 43-130 (575)
236 PF01023 S_100: S-100/ICaBP ty 39.2 51 0.0011 23.1 3.6 29 48-76 8-38 (44)
237 PF03929 PepSY_TM: PepSY-assoc 38.7 53 0.0012 20.5 3.2 20 246-265 2-21 (27)
238 KOG2243 Ca2+ release channel ( 37.9 44 0.00095 40.3 4.7 56 13-73 4063-4119(5019)
239 PF00404 Dockerin_1: Dockerin 37.8 33 0.00071 20.0 2.0 16 56-71 1-16 (21)
240 PF09068 EF-hand_2: EF hand; 36.6 1E+02 0.0023 27.1 6.0 49 25-73 58-124 (127)
241 KOG2871 Uncharacterized conser 35.3 27 0.00059 36.1 2.4 67 43-116 306-372 (449)
242 KOG1707 Predicted Ras related/ 34.9 46 0.00099 36.9 4.1 61 46-117 315-376 (625)
243 PLN02228 Phosphoinositide phos 34.0 1.1E+02 0.0024 34.2 7.1 68 43-118 21-92 (567)
244 PF10897 DUF2713: Protein of u 33.4 1.2E+02 0.0027 28.6 6.0 41 24-64 175-227 (246)
245 PF01023 S_100: S-100/ICaBP ty 32.4 1.3E+02 0.0029 21.0 4.8 32 91-122 8-41 (44)
246 PF13172 PepSY_TM_1: PepSY-ass 32.3 68 0.0015 20.9 3.2 23 245-267 5-27 (34)
247 PF03960 ArsC: ArsC family; I 31.7 1E+02 0.0022 26.1 5.2 57 61-125 31-89 (110)
248 PLN02223 phosphoinositide phos 31.5 1.3E+02 0.0029 33.3 7.0 75 43-118 13-92 (537)
249 KOG4301 Beta-dystrobrevin [Cyt 30.5 1.1E+02 0.0024 31.4 5.7 57 12-73 115-172 (434)
250 cd03035 ArsC_Yffb Arsenate Red 30.3 59 0.0013 27.6 3.3 32 94-125 59-90 (105)
251 PF00033 Cytochrom_B_N: Cytoch 29.9 2.2E+02 0.0047 26.3 7.6 27 243-269 44-70 (188)
252 PRK10026 arsenate reductase; P 29.5 1.4E+02 0.0029 27.0 5.6 58 61-125 37-94 (141)
253 KOG4403 Cell surface glycoprot 28.7 2.1E+02 0.0046 30.4 7.5 59 8-74 69-129 (575)
254 cd03036 ArsC_like Arsenate Red 28.7 59 0.0013 27.8 3.1 58 62-125 35-93 (111)
255 PLN02222 phosphoinositide phos 28.1 1.4E+02 0.0031 33.5 6.7 67 44-118 23-90 (581)
256 PF01794 Ferric_reduct: Ferric 27.2 1.2E+02 0.0026 25.9 4.9 27 342-368 28-55 (125)
257 PRK13344 spxA transcriptional 27.0 57 0.0012 28.9 2.8 58 61-125 35-92 (132)
258 PF01292 Ni_hydr_CYTB: Prokary 26.0 4.4E+02 0.0095 24.1 8.9 22 246-267 43-64 (182)
259 PF00667 FAD_binding_1: FAD bi 25.8 1.6E+02 0.0034 28.5 6.0 41 404-444 9-55 (219)
260 PF14513 DAG_kinase_N: Diacylg 25.5 70 0.0015 28.7 3.0 51 59-120 4-62 (138)
261 TIGR01616 nitro_assoc nitrogen 25.1 2E+02 0.0043 25.3 5.8 56 61-125 36-91 (126)
262 cd03034 ArsC_ArsC Arsenate Red 25.0 2.3E+02 0.005 24.1 6.2 58 61-125 34-91 (112)
263 PLN02230 phosphoinositide phos 25.0 2.3E+02 0.005 32.0 7.6 73 43-118 26-102 (598)
264 PRK12559 transcriptional regul 24.8 1.9E+02 0.0042 25.5 5.8 58 61-125 35-92 (131)
265 KOG3442 Uncharacterized conser 23.4 1.3E+02 0.0029 26.1 4.1 44 59-107 52-95 (132)
266 PLN02952 phosphoinositide phos 23.0 1.5E+02 0.0034 33.4 5.8 55 59-120 13-67 (599)
267 cd03032 ArsC_Spx Arsenate Redu 22.8 2.7E+02 0.0059 23.7 6.2 58 61-125 35-92 (115)
268 PF00667 FAD_binding_1: FAD bi 22.5 63 0.0014 31.4 2.4 25 447-471 177-203 (219)
269 PRK12446 undecaprenyldiphospho 21.3 79 0.0017 33.2 3.0 25 526-550 2-28 (352)
270 PLN02228 Phosphoinositide phos 21.2 2.8E+02 0.006 31.2 7.2 61 8-73 25-91 (567)
No 1
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.8e-66 Score=571.62 Aligned_cols=491 Identities=53% Similarity=0.909 Sum_probs=414.7
Q ss_pred CcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcCCCCC
Q 007179 25 DTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHL 104 (614)
Q Consensus 25 G~I~~~ef~~~l~~~~~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D~d~~ 104 (614)
+ |+++|+. ....+.|++++.+|+++|. ++|.++.+|+..+++..+..+.....+++.++....++++.|.++.
T Consensus 3 ~-~~~~~~~-----~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (646)
T KOG0039|consen 3 G-ISFQELK-----ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHK 75 (646)
T ss_pred C-cchhhhc-----ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhcccccc
Confidence 5 8999998 5677899999999999998 9999999999999997666555667788899999999999999999
Q ss_pred CceeHHHHHHHHHhCCcccccCCCCc-cccchhhhcccCCCCCCccccccchhhHHHhhcceeeeehHHHHHHHHHHHHH
Q 007179 105 GCIMIDNLEMLLLQAPAQSVKGGESR-NLSHMLSQKLKPTQFDNPIRRCCDSTMYFLLDNWQRVWVMAQWIGVMAGLFTY 183 (614)
Q Consensus 105 G~It~eef~~~l~~~~~~~~~~~~~~-~~~~~~~~~l~p~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 183 (614)
|++..+++..++.+.+.......... ++.....+..+|.. .+...+...+...|++++|.+.+.+++|+++++++|.|
T Consensus 76 ~y~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lf~~ 154 (646)
T KOG0039|consen 76 GYITNEDLEILLLQIPTLLFAILLSFANLSLLLSQPLKPTR-RKPLLRNLVRMGAFLPNLWLRVWVLFLWLGLNVGLFTW 154 (646)
T ss_pred ceeeecchhHHHHhchHHHHHHHHHHHHHHhhhcccccccc-ccccchheeeeeeeeccceEeeeeehHHHHHHHHHHHH
Confidence 99999999999999987643211111 22233333333322 33445667777889999999999999999999999999
Q ss_pred HHhhccccchhhhhccceeecccchhhccchhhHHHHHhhhhHhhhccccccccccccCccchhHHHHHHHHHHHHHHHH
Q 007179 184 KYIQYKNRAAFEVMGHCVCMAKGAAETLKFNMALILLPVCRNTITWLRNKTKLSGVVPFDDNLNFHKVIAVGISIGVGIH 263 (614)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~ar~~~~~l~~~~~li~l~~~Rn~l~~l~~~~~l~~~~~~d~~~~~Hr~~g~~~~~~~~iH 263 (614)
++..|...+.+.++|.+.+.+++++.++++|++++++++|||.++||+....+...+|+|+++.||+.+|.....++.+|
T Consensus 155 ~~~~y~~~~~~~~~g~~~~~~~~~~~~l~~~~~~ill~~~R~~~~~L~~~~fl~~~~p~~~n~~fh~l~g~~~~~~~~~H 234 (646)
T KOG0039|consen 155 RFLQYVYLGTRHILGLCLALARGSAETLNFNMALILLPVCRNRLTFLRCSTFLFSYLPFDRNLNFHKLVALTIAVFILLH 234 (646)
T ss_pred HHHHHHhhhhhhhhhheeeeeccccccchhhHHHHHHHHHHHHHHHHHHhhhhheEeeccccchHHHHHHHHHHHHHHHH
Confidence 99988877778899999999999999999999999999999999999944446678999999999999999999999999
Q ss_pred HHhhhhccccceecccccccC-CcCCccCCCCccccccccccchHHHHHHHHHHHHHHHhcchhHhhccCCCCCcccccc
Q 007179 264 AISHLACDFPRLINASEEKYE-PMEPYFGDQPKNYWHFVKSVEGVTGIVMVVLMAIAFTLATPWFRRNKLNLPKPLKKLT 342 (614)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~s~~~iRr~~~~~~~~~~~~~ 342 (614)
.++|.+|.++.+.++....+. .....+ .++.++++..+..+++|+++++++.+|+++|++++||+
T Consensus 235 ~w~~~~~~~~~~ih~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~tGv~~~i~~~im~v~s~~~fRR~------------ 300 (646)
T KOG0039|consen 235 IWLHLVNFFPFLVHGLEYTISLASELFF--LPKTYKWLLLGVVGLTGVILLILMLIMFVLSLPFFRRR------------ 300 (646)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhcc--cchhhhhhhcCCCcchhHHHHHHHHHHHHHhhHHHHHH------------
Confidence 999998877776665321111 111112 24456678888999999999999999999999999998
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhhhhhhccccccceeEEeeehhhhHHhhHhhhhhhhccceeEEEEEEEEecCCEEEEE
Q 007179 343 GFNAFWYSHHLFVIVYTLLIVHGQYLYLTKKWYKKTTWMYLAIPICLYATERLIRALRSSIKAVSIQKVAVYPGNVLALH 422 (614)
Q Consensus 343 ~ye~F~~~H~l~~~~~v~~~~H~~~~~~~~~~~~~~~w~~~~~~~~i~~~dr~~r~~r~~~~~~~v~~~~~~~~~v~~l~ 422 (614)
.||.||++|++++++|+++++|+...+.. ..|+|+++|+.+|++||++|..|+ ..++++.++..+++|+++++
T Consensus 301 ~~e~F~ytH~l~~v~~illi~hg~~~~~~------~~w~~~~~p~~ly~~dR~~r~~r~-~~~~~i~~~~llp~~vi~L~ 373 (646)
T KOG0039|consen 301 FYEAFWYTHHLYIVFYILLIIHGGFRLLG------TTWMYIAVPVLLYILDRILRFLRS-QKNVKIAKVVLLPSDVLELI 373 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccc------cchhHHHHHHHHHHHHHHHHHHHH-hcCceEEEEEEcCCCeEEEE
Confidence 89999999999999999999998854332 678999988999999999999998 47899999999999999999
Q ss_pred EeCCCCcccCCCCEEEEEeCCCCCCccccceeccCCCCCcEEEEEEecCccchHHHHHhhhcCCCCCCCCCccccccCCC
Q 007179 423 MSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRTLGDWTRQLRTVFSEVCRPPPNGISGLLRAEGHN 502 (614)
Q Consensus 423 l~~~~~~~~~pGQ~v~l~~p~~~~~~~hpfTias~p~~~~l~l~ir~~g~~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~ 502 (614)
+++|+.++++||||++|++|..+.+|||||||+|+|++++++++||+.||||++|++.++..+.++..+.
T Consensus 374 ~~Kp~~f~y~~Gqyifv~~p~ls~~qwHPFTItSsp~dd~lsvhIk~~g~wT~~L~~~~~~~~~~~~~~~---------- 443 (646)
T KOG0039|consen 374 MSKPPGFKYKPGQYIFVNCPSLSKLEWHPFTITSAPEDDFLSVHIKALGDWTEKLRNAFSEVSQPPESDK---------- 443 (646)
T ss_pred EeCCCCCCCCCCCEEEEECccccccccCCceeecCCCCCEEEEEEEecCcHHHHHHHHHhhhcccccccc----------
Confidence 9999999999999999999999999999999999999999999999999999999999874222111110
Q ss_pred CCCCCEEEEeCccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhhccc
Q 007179 503 NPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAI 554 (614)
Q Consensus 503 ~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~~~~ 554 (614)
.....++.||||||.+.++..++++++|||||+|+||++|++++++.+.+..
T Consensus 444 ~~~~~~i~IdGPYG~~s~d~~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~ 495 (646)
T KOG0039|consen 444 SYPFPKILIDGPYGAPSQDVFKYEVLVLVGGGIGVTPFASILKDLLNKISLG 495 (646)
T ss_pred cccCceEEEECCCCCCchhhhhcceEEEEccCcccCccHHHHHHHHhhccCC
Confidence 0125899999999999988999999999999999999999999999875543
No 2
>PLN02631 ferric-chelate reductase
Probab=100.00 E-value=5.6e-50 Score=440.55 Aligned_cols=285 Identities=27% Similarity=0.494 Sum_probs=234.3
Q ss_pred eeecccchhhccchhhHHHHHhhhhH-hhhccccccccccccCccchhHHHHHHHHHHHHHHHHHHhhhhccccceeccc
Q 007179 201 VCMAKGAAETLKFNMALILLPVCRNT-ITWLRNKTKLSGVVPFDDNLNFHKVIAVGISIGVGIHAISHLACDFPRLINAS 279 (614)
Q Consensus 201 ~~~ar~~~~~l~~~~~li~l~~~Rn~-l~~l~~~~~l~~~~~~d~~~~~Hr~~g~~~~~~~~iH~~~~~~~~~~~~~~~~ 279 (614)
..+++++|.+...|+|++++|++||+ +.|++ |+++|+++.||||+|+++++++++|+++++. ++. ..
T Consensus 150 ~~ig~RtGila~~~lpll~L~a~Rnn~L~~lt-------G~s~e~~i~yHRWlGri~~~la~iH~i~y~i-~~~---~~- 217 (699)
T PLN02631 150 RAFGLRIGYVGHICWAFLFFPVTRASTILPLV-------GLTSESSIKYHIWLGHVSNFLFLVHTVVFLI-YWA---MI- 217 (699)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH---hh-
Confidence 45778899888899999999999997 78987 6899999999999999999999999999973 211 11
Q ss_pred ccccCCcCCccCCCCccccccccccchHHHHHHHHHHHHHHHhcchhHhhccCCCCCccccccccchhHHHHHHHHHHHH
Q 007179 280 EEKYEPMEPYFGDQPKNYWHFVKSVEGVTGIVMVVLMAIAFTLATPWFRRNKLNLPKPLKKLTGFNAFWYSHHLFVIVYT 359 (614)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~s~~~iRr~~~~~~~~~~~~~~ye~F~~~H~l~~~~~v 359 (614)
+.+. ..+. |. .....+++|+++++++++|+++|++++||+ +||+|+++|++++++++
T Consensus 218 -~~~~---~~~~------w~-~~~~~~~~GviA~v~~~lm~~~Sl~~~RRr------------~YE~F~~~Hillaifiv 274 (699)
T PLN02631 218 -NKLM---ETFA------WN-PTYVPNLAGTIAMVIGIAMWVTSLPSFRRK------------KFELFFYTHHLYGLYIV 274 (699)
T ss_pred -chhh---hhhh------cc-cccchHHHHHHHHHHHHHHHHhccHHHHhh------------hhhHHHHHHHHHHHHHH
Confidence 1110 0000 00 011235789999999999999999999998 89999999999998776
Q ss_pred HHHHHhhhhhhccccccceeEE-eeehhhhHHhhHhhhhhhhccceeEEEEEEEEecCCEEEEEEeCCCCcccCCCCEEE
Q 007179 360 LLIVHGQYLYLTKKWYKKTTWM-YLAIPICLYATERLIRALRSSIKAVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMF 438 (614)
Q Consensus 360 ~~~~H~~~~~~~~~~~~~~~w~-~~~~~~~i~~~dr~~r~~r~~~~~~~v~~~~~~~~~v~~l~l~~~~~~~~~pGQ~v~ 438 (614)
++++|... .|. |+++++++|++||++|.+|.. ...++++++.+++|+++++++.+.+++++||||++
T Consensus 275 ~~~~H~g~-----------~w~~~~~~~ialw~~DR~lR~~r~~-~~~~lv~~~~l~~d~l~l~~~~~~~~~~~PGQfvf 342 (699)
T PLN02631 275 FYVIHVGD-----------SWFCMILPNIFLFFIDRYLRFLQST-KRSRLVSARILPSDNLELTFSKTPGLHYTPTSILF 342 (699)
T ss_pred heEEecCC-----------chHHHHHHHHHHHHHHHHHHHHHHh-ceEEEEEEEEeCCCeEEEEEEcCCCCcCCCCceEE
Confidence 67888531 233 344678999999999999876 45788888889999999999987789999999999
Q ss_pred EEeCCCCCCccccceeccCCC--CCcEEEEEEecCccchHHHHHhhhcCCCCCCCCCccccccCCCCCCCCEEEEeCccC
Q 007179 439 VNCAAVSPFEWHPFSITSAPD--DDYLSVHIRTLGDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYG 516 (614)
Q Consensus 439 l~~p~~~~~~~hpfTias~p~--~~~l~l~ir~~g~~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG 516 (614)
|++|..+.+|+|||||+|+|+ ++.++++||+.|++|++|++.++. .| .+.++.++||||
T Consensus 343 L~~p~~s~~q~HPFSIaSsp~~~~~~L~~~IK~~Gg~T~~L~~~l~~------~g-------------~~i~V~VeGPYG 403 (699)
T PLN02631 343 LHVPSISKLQWHPFTITSSSNLEKDTLSVVIRRQGSWTQKLYTHLSS------SI-------------DSLEVSTEGPYG 403 (699)
T ss_pred EEeccCCccceEEEEEeccCCCCCCEEEEEEEcCChHHHHHHHhhhc------CC-------------CeeEEEEECCCC
Confidence 999998889999999999984 578999999999999999987642 11 136899999999
Q ss_pred CCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhh
Q 007179 517 APAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNM 551 (614)
Q Consensus 517 ~~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~ 551 (614)
.+..+..+++++|+||||+||||++|++++++++.
T Consensus 404 ~~~~~~~~~~~vVlIAGGsGITP~lSiL~~ll~~~ 438 (699)
T PLN02631 404 PNSFDVSRHNSLILVSGGSGITPFISVIRELIFQS 438 (699)
T ss_pred CCCCCcCCCCcEEEEEeCcChHhHHHHHHHHHhcc
Confidence 87655667899999999999999999999998753
No 3
>PLN02292 ferric-chelate reductase
Probab=100.00 E-value=2.3e-48 Score=428.78 Aligned_cols=287 Identities=24% Similarity=0.427 Sum_probs=236.3
Q ss_pred eecccchhhccchhhHHHHHhhhhH-hhhccccccccccccCccchhHHHHHHHHHHHHHHHHHHhhhhccccceecccc
Q 007179 202 CMAKGAAETLKFNMALILLPVCRNT-ITWLRNKTKLSGVVPFDDNLNFHKVIAVGISIGVGIHAISHLACDFPRLINASE 280 (614)
Q Consensus 202 ~~ar~~~~~l~~~~~li~l~~~Rn~-l~~l~~~~~l~~~~~~d~~~~~Hr~~g~~~~~~~~iH~~~~~~~~~~~~~~~~~ 280 (614)
.+|.++|.+.++++|++++|++||+ +.|++ |+|+|+++.||||+|+++++++++|++++++ ++ .. .
T Consensus 168 ~vg~R~Gila~~~lpll~l~~~Rnn~L~~lt-------G~s~e~f~~yHRWlGrii~ll~~lH~i~y~i-~~---~~--~ 234 (702)
T PLN02292 168 SIAVRLGLVGNICLAFLFYPVARGSSLLAAV-------GLTSESSIKYHIWLGHLVMTLFTSHGLCYII-YW---IS--M 234 (702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---Hh--c
Confidence 4788898888899999999999997 78887 6899999999999999999999999999974 21 11 1
Q ss_pred cccCCcCCccCCCCccccccccccchHHHHHHHHHHHHHHHhcchhHhhccCCCCCccccccccchhHHHHHHHHHHHHH
Q 007179 281 EKYEPMEPYFGDQPKNYWHFVKSVEGVTGIVMVVLMAIAFTLATPWFRRNKLNLPKPLKKLTGFNAFWYSHHLFVIVYTL 360 (614)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~s~~~iRr~~~~~~~~~~~~~~ye~F~~~H~l~~~~~v~ 360 (614)
+.+..+. . ++..+...++|+++++++.+|+++|++++||+ +||+|+++|+++++++++
T Consensus 235 ~~~~~~~---------~-w~~~~~~~i~G~iAlv~~~il~v~Sl~~iRR~------------~YE~F~~~HiL~~v~~v~ 292 (702)
T PLN02292 235 NQVSQML---------E-WDRTGVSNLAGEIALVAGLVMWATTYPKIRRR------------FFEVFFYTHYLYIVFMLF 292 (702)
T ss_pred Cchhhhh---------h-ccccchHHHHHHHHHHHHHHHHHHhhHHHHhc------------ccHhHHHHHHHHHHHHee
Confidence 1111110 0 11223456899999999999999999999998 899999999999887777
Q ss_pred HHHHhhhhhhccccccceeEEeeehhhhHHhhHhhhhhhhccceeEEEEEEEEecCCEEEEEEeCCCCcccCCCCEEEEE
Q 007179 361 LIVHGQYLYLTKKWYKKTTWMYLAIPICLYATERLIRALRSSIKAVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVN 440 (614)
Q Consensus 361 ~~~H~~~~~~~~~~~~~~~w~~~~~~~~i~~~dr~~r~~r~~~~~~~v~~~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~ 440 (614)
+++|.... ...+.++++++|++||++|.+|.+ .++++++++.+++|+++++++.|+.++++||||++++
T Consensus 293 ~~~H~~~~----------~~~~~~~~i~l~~~DR~lR~~r~~-~~~~Iv~~~~l~~dvv~L~~~~~~~~~~~PGQ~vfL~ 361 (702)
T PLN02292 293 FVFHVGIS----------FALISFPGFYIFLVDRFLRFLQSR-NNVKLVSARVLPCDTVELNFSKNPMLMYSPTSIMFVN 361 (702)
T ss_pred eehhhhhH----------HHHHHHHHHHHHHHHHHHHHHHhh-cceEEEEEEEcCCCEEEEEEEcCCCCCcCCCCeEEEE
Confidence 88996421 111344677899999999999875 7889999999999999999998888899999999999
Q ss_pred eCCCCCCccccceeccCCC--CCcEEEEEEecCccchHHHHHhhhcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCC
Q 007179 441 CAAVSPFEWHPFSITSAPD--DDYLSVHIRTLGDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAP 518 (614)
Q Consensus 441 ~p~~~~~~~hpfTias~p~--~~~l~l~ir~~g~~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~ 518 (614)
+|..+.+++|||||+|+|+ +++++++||+.|++|++|++.++. |+ .....++.++||||.+
T Consensus 362 ~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK~~G~~T~~L~~~l~~-------gd----------~i~~~~V~VeGPYG~~ 424 (702)
T PLN02292 362 IPSISKLQWHPFTITSSSKLEPEKLSVMIKSQGKWSTKLYHMLSS-------SD----------QIDRLAVSVEGPYGPA 424 (702)
T ss_pred EccCCccceeeeEeeccCCCCCCEEEEEEEcCCchhHHHHHhCCC-------CC----------ccccceEEEECCccCC
Confidence 9998889999999999873 578999999999999999987632 21 0113579999999987
Q ss_pred CCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhh
Q 007179 519 AQDYKEYEVVLLVGLGIGATPMISIVKDIVNNM 551 (614)
Q Consensus 519 ~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~ 551 (614)
..+...++++++||||+||||++|+++++.++.
T Consensus 425 ~~~~~~~~~vvlIAGGiGITP~lsil~~L~~~~ 457 (702)
T PLN02292 425 STDFLRHESLVMVSGGSGITPFISIIRDLIYTS 457 (702)
T ss_pred ccccccCCcEEEEEeccCHHHHHHHHHHHHhcc
Confidence 655566799999999999999999999998753
No 4
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=100.00 E-value=3.4e-46 Score=412.74 Aligned_cols=292 Identities=27% Similarity=0.503 Sum_probs=232.9
Q ss_pred eecccchhhccchhhHHHHHhhhhH-hhhccccccccccccCccchhHHHHHHHHHHHHHHHHHHhhhhccccceecccc
Q 007179 202 CMAKGAAETLKFNMALILLPVCRNT-ITWLRNKTKLSGVVPFDDNLNFHKVIAVGISIGVGIHAISHLACDFPRLINASE 280 (614)
Q Consensus 202 ~~ar~~~~~l~~~~~li~l~~~Rn~-l~~l~~~~~l~~~~~~d~~~~~Hr~~g~~~~~~~~iH~~~~~~~~~~~~~~~~~ 280 (614)
.++++.|.+...|+|++++|++||+ +.+++ |+|+|+++.||||+|+++++++++|+++++. .+ ...
T Consensus 154 ~va~R~G~la~~~Lpll~llv~Rnn~l~~lt-------Gis~e~~i~fHrWlGr~~~llallH~i~~~i-~w---~~~-- 220 (722)
T PLN02844 154 RVATRFGLLAEACLALLLLPVLRGLALFRLL-------GIQFEASVRYHVWLGTSMIFFATVHGASTLF-IW---GIS-- 220 (722)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHHhh-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---Hhh--
Confidence 4677888888899999999999997 56665 6899999999999999999999999999873 11 111
Q ss_pred cccCCcCCccCCCCcccccc-ccccchHHHHHHHHHHHHHHHhcchhHhhccCCCCCccccccccchhHHHHHHHHHHHH
Q 007179 281 EKYEPMEPYFGDQPKNYWHF-VKSVEGVTGIVMVVLMAIAFTLATPWFRRNKLNLPKPLKKLTGFNAFWYSHHLFVIVYT 359 (614)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~G~~~~~~l~~~~~~s~~~iRr~~~~~~~~~~~~~~ye~F~~~H~l~~~~~v 359 (614)
+... ..++.| ..+...++|+++++++.+|+++|++++||+ +||+|+++|++++++++
T Consensus 221 ~~~~----------~~~~~w~~~~~~~~~G~IAlv~l~iL~itSl~~iRR~------------~YElF~~~H~L~ivflv 278 (722)
T PLN02844 221 HHIQ----------DEIWKWQKTGRIYLAGEIALVTGLVIWITSLPQIRRK------------RFEIFYYTHHLYIVFLI 278 (722)
T ss_pred cchh----------hhhhhhccCcchhhhHHHHHHHHHHHHHHhhHHHHhh------------hhHHHHHHHHHHHHHHH
Confidence 1110 001111 122335789999999999999999999998 89999999999988888
Q ss_pred HHHHHhhhhhhccccccceeEEeeehhhhHHhhHhhhhhhhccceeEEEEEEEEecCCEEEEEEeCCCCcccCCCCEEEE
Q 007179 360 LLIVHGQYLYLTKKWYKKTTWMYLAIPICLYATERLIRALRSSIKAVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFV 439 (614)
Q Consensus 360 ~~~~H~~~~~~~~~~~~~~~w~~~~~~~~i~~~dr~~r~~r~~~~~~~v~~~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l 439 (614)
++++|+.. ..+.|+++++++|++||++|.++.+. ...+.+++..+++++++++++|..++|+||||+++
T Consensus 279 ~~~~H~~~----------~~~~~v~~~i~L~~~DRllR~~~s~~-~~~vvs~~~~~~~~v~l~i~r~~~~~f~PGQfV~L 347 (722)
T PLN02844 279 FFLFHAGD----------RHFYMVFPGIFLFGLDKLLRIVQSRP-ETCILSARLFPCKAIELVLPKDPGLKYAPTSVIFM 347 (722)
T ss_pred hhhHhhcC----------cchhhhHHHHHHHHHHHHhheEEEee-eEEEEEEEEecCCEEEEEEECCCCCCcCCCeeEEE
Confidence 88999752 11235567889999999999988763 34456777888999999999888899999999999
Q ss_pred EeCCCCCCccccceeccCC--CCCcEEEEEEecCccchHHHHHhhhcCCCCCCCCCccccccCCCCCCCCEEEEeCccCC
Q 007179 440 NCAAVSPFEWHPFSITSAP--DDDYLSVHIRTLGDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGA 517 (614)
Q Consensus 440 ~~p~~~~~~~hpfTias~p--~~~~l~l~ir~~g~~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~ 517 (614)
++|..+++++|||||+|+| +++.+++.||..|++|++|.+.++...+ +|. ......++.|+||||.
T Consensus 348 ~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~~gG~T~~L~~~i~~~l~---~g~---------~~~~~~~v~VeGPYG~ 415 (722)
T PLN02844 348 KIPSISRFQWHPFSITSSSNIDDHTMSVIIKCEGGWTNSLYNKIQAELD---SET---------NQMNCIPVAIEGPYGP 415 (722)
T ss_pred EECCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCchHHHHHHHHhhcc---CCC---------CcccceEEEEECCccC
Confidence 9999988999999999987 4678999999999999999987653211 110 0011258999999999
Q ss_pred CCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhh
Q 007179 518 PAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNM 551 (614)
Q Consensus 518 ~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~ 551 (614)
+..+...++++++||||+||||++|+++++.++.
T Consensus 416 ~s~~~~~~~~lVLIAGGiGITPfLSiLrdl~~~~ 449 (722)
T PLN02844 416 ASVDFLRYDSLLLVAGGIGITPFLSILKEIASQS 449 (722)
T ss_pred CCCCccCCCeEEEEEcCcCHHHHHHHHHHHHhcc
Confidence 8655667899999999999999999999998753
No 5
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-34 Score=282.57 Aligned_cols=325 Identities=19% Similarity=0.275 Sum_probs=216.2
Q ss_pred chhhHHHHHhhhhHhhhccccccccccccCccchhHHHHHHHHHHHHHHHHHHhhhhccccceecccccccCCc--CCcc
Q 007179 213 FNMALILLPVCRNTITWLRNKTKLSGVVPFDDNLNFHKVIAVGISIGVGIHAISHLACDFPRLINASEEKYEPM--EPYF 290 (614)
Q Consensus 213 ~~~~li~l~~~Rn~l~~l~~~~~l~~~~~~d~~~~~Hr~~g~~~~~~~~iH~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 290 (614)
..|+++++.+.| +.++..++ -++|+.+++|||.|..++++.+.|-+.....++ .....-.+.++ ..++
T Consensus 50 ~~msl~~~LA~R--~~~iE~~~-----~GlD~~Y~~HK~~sIlailL~l~H~~~~~~g~w---~~~~~l~~k~a~v~~~l 119 (438)
T COG4097 50 ALMSLIFLLATR--LPLIEAWF-----NGLDKIYRFHKYTSILAILLLLAHNFILFIGNW---LTLQLLNFKPAPVKPSL 119 (438)
T ss_pred HHHHHHHHHHhc--hHHHhhhh-----hhhhHHhHHHHHHHHHHHHHHHHHHHHHHcCcc---hhcccccccccccchhh
Confidence 468889999998 44676542 478999999999999999999999998653221 11000011100 0000
Q ss_pred CCCCccccccccccchHHHHHHHHHHHHHHHhcchhHhhccCCCCCccccccccchhHHHHHHHHHHHHHHHHHhhhhhh
Q 007179 291 GDQPKNYWHFVKSVEGVTGIVMVVLMAIAFTLATPWFRRNKLNLPKPLKKLTGFNAFWYSHHLFVIVYTLLIVHGQYLYL 370 (614)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~s~~~iRr~~~~~~~~~~~~~~ye~F~~~H~l~~~~~v~~~~H~~~~~~ 370 (614)
. ..|........+..++ +..+++.+.-+. ++.||-|+++|.+++++|++..+|.....-
T Consensus 120 ~----~~~~s~~elG~~~~yi----~~~lllV~~l~~-------------~i~Ye~WR~~H~lm~vvYilg~~H~~~l~~ 178 (438)
T COG4097 120 A----GMWRSAKELGEWSAYI----FIGLLLVWRLWL-------------NIGYENWRIAHRLMAVVYILGLLHSYGLLN 178 (438)
T ss_pred h----hhhHHHHHHHHHHHHH----HHHHHHHHHHHH-------------hcCchhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 0 0011111111111122 111112221222 236999999999999999999999774321
Q ss_pred cccccccee-EEe---eehhhhHHhhHhhhhhhhccceeEEEEEEEEecCCEEEEEEeCCCCcccCCCCEEEEEeCCCC-
Q 007179 371 TKKWYKKTT-WMY---LAIPICLYATERLIRALRSSIKAVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVS- 445 (614)
Q Consensus 371 ~~~~~~~~~-w~~---~~~~~~i~~~dr~~r~~r~~~~~~~v~~~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~p~~~- 445 (614)
...|..+.. |.- .+++...++.....+..+++.+..+|+..+..+.++.+++.....++.++||||.++.++...
T Consensus 179 ~~~~s~~a~swl~~~~allG~l~~iysi~~y~~~s~~y~~~vt~~~r~~~~t~eit~~l~~~~~~qaGQFAfLk~~~~~~ 258 (438)
T COG4097 179 YLYLSWPAVSWLVIAFALLGLLAAIYSIFGYFGRSFPYLGKVTAPQRGNVDTLEITIGLQGPWLYQAGQFAFLKIEIEEF 258 (438)
T ss_pred hhHhhccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccceEEechhhcCcchheeecccCCcccccCCceEEEEeccccc
Confidence 112211111 211 111112222233334456666788999999999999999888777777999999999999763
Q ss_pred CCccccceeccCCCCCcEEEEEEecCccchHHHHHhhhcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCCCCCCCCC
Q 007179 446 PFEWHPFSITSAPDDDYLSVHIRTLGDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEY 525 (614)
Q Consensus 446 ~~~~hpfTias~p~~~~l~l~ir~~g~~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~ 525 (614)
....||||||++.+.++++|.||+.||+|+.|.+.++ + |.++.||||||.+..+- .-
T Consensus 259 ~~~~HPFTIa~s~~~sel~FsIK~LGD~Tk~l~dnLk-------~---------------G~k~~vdGPYG~F~~~~-g~ 315 (438)
T COG4097 259 RMRPHPFTIACSHEGSELRFSIKALGDFTKTLKDNLK-------V---------------GTKLEVDGPYGKFDFER-GL 315 (438)
T ss_pred cCCCCCeeeeeCCCCceEEEEehhhhhhhHHHHHhcc-------C---------------CceEEEecCcceeeccc-CC
Confidence 4568999999998888999999999999999998763 3 48999999999986432 23
Q ss_pred CeEEEEEeCcCHHHHHHHHHHHHHhhccc------------chhHHHHHhcccccCCCEEEEEecCCCCCCccccccccc
Q 007179 526 EVVLLVGLGIGATPMISIVKDIVNNMKAI------------EEEEENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGP 593 (614)
Q Consensus 526 ~~vvlIagG~GItp~~s~l~~l~~~~~~~------------~~~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~w~g~~G~ 593 (614)
++-|+||||+||||++|+++++..+..+. +..+.+||+++.++.+++++|+. |+++.|+
T Consensus 316 ~~QVWIAGGIGITPFis~l~~l~~~~s~~~V~L~Y~~~n~e~~~y~~eLr~~~qkl~~~~lHii---------DSs~~g~ 386 (438)
T COG4097 316 NTQVWIAGGIGITPFISMLFTLAERKSDPPVHLFYCSRNWEEALYAEELRALAQKLPNVVLHII---------DSSKDGY 386 (438)
T ss_pred cccEEEecCcCcchHHHHHHhhcccccCCceEEEEEecCCchhHHHHHHHHHHhcCCCeEEEEe---------cCCCCCc
Confidence 44899999999999999999998843322 22466799999888888888885 3445566
Q ss_pred CChHHHH
Q 007179 594 IQDKKSI 600 (614)
Q Consensus 594 i~~~~~~ 600 (614)
++.+..+
T Consensus 387 l~~e~le 393 (438)
T COG4097 387 LDQEDLE 393 (438)
T ss_pred cCHHHhh
Confidence 6544333
No 6
>PRK08051 fre FMN reductase; Validated
Probab=99.91 E-value=3.6e-23 Score=205.00 Aligned_cols=172 Identities=18% Similarity=0.243 Sum_probs=135.2
Q ss_pred eeEEEEEEEEecCCEEEEEEeCCCCcccCCCCEEEEEeCCCCCCccccceeccCC-CCCcEEEEEEecCc--cchHHHHH
Q 007179 404 KAVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAP-DDDYLSVHIRTLGD--WTRQLRTV 480 (614)
Q Consensus 404 ~~~~v~~~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~p~~~~~~~hpfTias~p-~~~~l~l~ir~~g~--~T~~L~~~ 480 (614)
..++|.+++.++++++.++++.++++.|+||||+.|+++.. +.|||||+|.| +++.++|+||..++ .+..+.+.
T Consensus 3 ~~~~v~~i~~~~~~~~~l~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySias~p~~~~~l~~~v~~~~~~~~~~~~~~~ 79 (232)
T PRK08051 3 LSCKVTSVEAITDTVYRVRLVPEAPFSFRAGQYLMVVMGEK---DKRPFSIASTPREKGFIELHIGASELNLYAMAVMER 79 (232)
T ss_pred eEEEEEEEecCCCCeEEEEEecCCCCccCCCCEEEEEcCCC---cceeecccCCCCCCCcEEEEEEEcCCCcchHHHHHH
Confidence 46789999999999999999987788999999999999764 57999999998 57889999999764 45555444
Q ss_pred hhhcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhhcccch----
Q 007179 481 FSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIEE---- 556 (614)
Q Consensus 481 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~~~~~~---- 556 (614)
++ + +++|.|+||||.+.......+++||||||+||||++|+++++.......+.
T Consensus 80 l~-------~---------------G~~v~v~gP~G~~~~~~~~~~~~vliagG~GiaP~~~~l~~~~~~~~~~~v~l~~ 137 (232)
T PRK08051 80 IL-------K---------------DGEIEVDIPHGDAWLREESERPLLLIAGGTGFSYARSILLTALAQGPNRPITLYW 137 (232)
T ss_pred cC-------C---------------CCEEEEEcCCCceEccCCCCCcEEEEecCcCcchHHHHHHHHHHhCCCCcEEEEE
Confidence 32 2 489999999999875444567899999999999999999999876432221
Q ss_pred --------hHHHHHhcccccCCCE-EEEEecCCCCCCcccccccccCChHHHHHhh
Q 007179 557 --------EEENDLENGRDTGVNT-TIIIIDNNYEPFFFWTQKKGPIQDKKSILLL 603 (614)
Q Consensus 557 --------~~~~~l~~l~~~~~~~-~v~~~~~~~~~~~~w~g~~G~i~~~~~~~~~ 603 (614)
.+.++|+++++.+.+. .+.+++++++. |.|++|++++...+.+.
T Consensus 138 g~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~---~~~~~g~v~~~l~~~~~ 190 (232)
T PRK08051 138 GGREEDHLYDLDELEALALKHPNLHFVPVVEQPEEG---WQGKTGTVLTAVMQDFG 190 (232)
T ss_pred EeccHHHhhhhHHHHHHHHHCCCcEEEEEeCCCCCC---cccceeeehHHHHhhcc
Confidence 2456898887776663 34456666666 89999999988766443
No 7
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=99.90 E-value=2.9e-23 Score=204.67 Aligned_cols=170 Identities=21% Similarity=0.327 Sum_probs=136.3
Q ss_pred EEEEEEEEecCCEEEEEEeCCCCcccCCCCEEEEEeCCCCCCccccceeccCCC-CCcEEEEEEec--CccchHHHHHhh
Q 007179 406 VSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRTL--GDWTRQLRTVFS 482 (614)
Q Consensus 406 ~~v~~~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~p~~~~~~~hpfTias~p~-~~~l~l~ir~~--g~~T~~L~~~~~ 482 (614)
++|++++.+++++++++++.|..+.++||||+.|.++.. .+|||||+|.|+ ++.++|+||.. |.+|++|.+.++
T Consensus 1 ~~v~~~~~~t~~~~~l~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySi~s~~~~~~~l~~~vk~~~~G~~s~~l~~~l~ 77 (224)
T cd06189 1 CKVESIEPLNDDVYRVRLKPPAPLDFLAGQYLDLLLDDG---DKRPFSIASAPHEDGEIELHIRAVPGGSFSDYVFEELK 77 (224)
T ss_pred CEEEEEEeCCCceEEEEEecCCCcccCCCCEEEEEcCCC---CceeeecccCCCCCCeEEEEEEecCCCccHHHHHHhcc
Confidence 367889999999999999988788999999999999864 589999999986 68999999998 668988876542
Q ss_pred hcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhhcccch------
Q 007179 483 EVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIEE------ 556 (614)
Q Consensus 483 ~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~~~~~~------ 556 (614)
+ ++++.|.||||.+.......+++||||||+||||++|+++++.......+.
T Consensus 78 -------~---------------G~~v~i~gP~G~~~~~~~~~~~ivliagG~GiaP~~~~l~~l~~~~~~~~v~l~~~~ 135 (224)
T cd06189 78 -------E---------------NGLVRIEGPLGDFFLREDSDRPLILIAGGTGFAPIKSILEHLLAQGSKRPIHLYWGA 135 (224)
T ss_pred -------C---------------CCEEEEecCCccEEeccCCCCCEEEEecCcCHHHHHHHHHHHHhcCCCCCEEEEEec
Confidence 2 488999999999875444578999999999999999999999876432221
Q ss_pred ------hHHHHHhcccccCCCEE-EEEecCCCCCCcccccccccCChHHHHHhh
Q 007179 557 ------EEENDLENGRDTGVNTT-IIIIDNNYEPFFFWTQKKGPIQDKKSILLL 603 (614)
Q Consensus 557 ------~~~~~l~~l~~~~~~~~-v~~~~~~~~~~~~w~g~~G~i~~~~~~~~~ 603 (614)
.+.++|+++.+.+.+.. ..+++++.++ |.|.+|++++...+.+.
T Consensus 136 r~~~~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~---~~g~~g~v~~~l~~~~~ 186 (224)
T cd06189 136 RTEEDLYLDELLEAWAEAHPNFTYVPVLSEPEEG---WQGRTGLVHEAVLEDFP 186 (224)
T ss_pred CChhhccCHHHHHHHHHhCCCeEEEEEeCCCCcC---CccccccHHHHHHhhcc
Confidence 24568888877667743 3456666666 88999999988766543
No 8
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=99.89 E-value=1.3e-22 Score=201.70 Aligned_cols=174 Identities=22% Similarity=0.300 Sum_probs=136.3
Q ss_pred eeEEEEEEEEecCCEEEEEEeCCCC------cccCCCCEEEEEeCCCCCCccccceeccCCC-CCcEEEEEEec--Cccc
Q 007179 404 KAVSIQKVAVYPGNVLALHMSKPDR------FRYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRTL--GDWT 474 (614)
Q Consensus 404 ~~~~v~~~~~~~~~v~~l~l~~~~~------~~~~pGQ~v~l~~p~~~~~~~hpfTias~p~-~~~l~l~ir~~--g~~T 474 (614)
..++|++++.+++++++++++.|.. +.|+||||+.|.+|+.. ++|||||+|.|. ++.++|+||.. |.+|
T Consensus 2 ~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~~~--~~R~ySi~s~~~~~~~l~~~i~~~~~G~~s 79 (236)
T cd06210 2 REAEIVAVDRVSSNVVRLRLQPDDAEGAGIAAEFVPGQFVEIEIPGTD--TRRSYSLANTPNWDGRLEFLIRLLPGGAFS 79 (236)
T ss_pred ceEEEEEEeecCCceEEEEEEeCCcccccccCCcCCCCEEEEEcCCCc--cceecccCCCCCCCCEEEEEEEEcCCCccc
Confidence 3578999999999999999998764 78999999999998643 689999999986 67899999987 6678
Q ss_pred hHHHHHhhhcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhhccc
Q 007179 475 RQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAI 554 (614)
Q Consensus 475 ~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~~~~ 554 (614)
+.|.+.++ + ++++.|.||+|.+..+....++++|||||+||||++|+++++.+.....
T Consensus 80 ~~l~~~~~-------~---------------Gd~v~i~gP~G~f~l~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~~~ 137 (236)
T cd06210 80 TYLETRAK-------V---------------GQRLNLRGPLGAFGLRENGLRPRWFVAGGTGLAPLLSMLRRMAEWGEPQ 137 (236)
T ss_pred hhhhhCcC-------C---------------CCEEEEecCcceeeecCCCCccEEEEccCcchhHHHHHHHHHHhcCCCc
Confidence 87765332 2 4889999999998654445678999999999999999999988754222
Q ss_pred c-----------h-hHHHHHhcccccCCCEE-EEEecCCCCCCcccccccccCChHHHHHhhc
Q 007179 555 E-----------E-EEENDLENGRDTGVNTT-IIIIDNNYEPFFFWTQKKGPIQDKKSILLLG 604 (614)
Q Consensus 555 ~-----------~-~~~~~l~~l~~~~~~~~-v~~~~~~~~~~~~w~g~~G~i~~~~~~~~~~ 604 (614)
+ + .+.++|+++.+.+++.. .++++++.++ |.+.+|++.+...+.+..
T Consensus 138 ~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~---~~~~~g~~~~~l~~~l~~ 197 (236)
T cd06210 138 EARLFFGVNTEAELFYLDELKRLADSLPNLTVRICVWRPGGE---WEGYRGTVVDALREDLAS 197 (236)
T ss_pred eEEEEEecCCHHHhhhHHHHHHHHHhCCCeEEEEEEcCCCCC---cCCccCcHHHHHHHhhcc
Confidence 1 1 24568888877767743 3455665556 889999998877665543
No 9
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=99.89 E-value=3e-22 Score=199.29 Aligned_cols=173 Identities=16% Similarity=0.246 Sum_probs=135.0
Q ss_pred eeEEEEEEEEecCCEEEEEEeCCCCc--ccCCCCEEEEEeCCCCCCccccceeccCCC-CCcEEEEEEec--CccchHHH
Q 007179 404 KAVSIQKVAVYPGNVLALHMSKPDRF--RYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRTL--GDWTRQLR 478 (614)
Q Consensus 404 ~~~~v~~~~~~~~~v~~l~l~~~~~~--~~~pGQ~v~l~~p~~~~~~~hpfTias~p~-~~~l~l~ir~~--g~~T~~L~ 478 (614)
..++|.+++.+++++..++++.|++. .|+||||+.|++|... +.|||||+|.|+ ++.++|+||.. |..|+.|.
T Consensus 7 ~~~~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~~~~~l~l~i~~~~~G~~s~~l~ 84 (238)
T cd06211 7 FEGTVVEIEDLTPTIKGVRLKLDEPEEIEFQAGQYVNLQAPGYE--GTRAFSIASSPSDAGEIELHIRLVPGGIATTYVH 84 (238)
T ss_pred EeEEEEEEEecCCCEEEEEEEcCCCCcCccCCCCeEEEEcCCCC--CccccccCCCCCCCCEEEEEEEECCCCcchhhHh
Confidence 46789999999999999999987754 8999999999998643 679999999986 67899999998 77898886
Q ss_pred HHhhhcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhhcccc---
Q 007179 479 TVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE--- 555 (614)
Q Consensus 479 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~~~~~--- 555 (614)
+.++ + ++++.|.||+|.+.......+++||||||+||||++|+++++++.....+
T Consensus 85 ~~l~-------~---------------G~~v~i~gP~G~~~~~~~~~~~~v~iagG~GiaP~~~~l~~~~~~~~~~~v~l 142 (238)
T cd06211 85 KQLK-------E---------------GDELEISGPYGDFFVRDSDQRPIIFIAGGSGLSSPRSMILDLLERGDTRKITL 142 (238)
T ss_pred hcCC-------C---------------CCEEEEECCccceEecCCCCCCEEEEeCCcCHHHHHHHHHHHHhcCCCCcEEE
Confidence 5332 2 48899999999987543445899999999999999999999987643211
Q ss_pred --------h-hHHHHHhcccccCCCE-EEEEecCC--CCCCcccccccccCChHHHHHhh
Q 007179 556 --------E-EEENDLENGRDTGVNT-TIIIIDNN--YEPFFFWTQKKGPIQDKKSILLL 603 (614)
Q Consensus 556 --------~-~~~~~l~~l~~~~~~~-~v~~~~~~--~~~~~~w~g~~G~i~~~~~~~~~ 603 (614)
+ .+.++++++.+.+++. .+++++++ .+. |.|.+|++++.+.+.+.
T Consensus 143 ~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~~~---~~~~~g~v~~~l~~~~~ 199 (238)
T cd06211 143 FFGARTRAELYYLDEFEALEKDHPNFKYVPALSREPPESN---WKGFTGFVHDAAKKHFK 199 (238)
T ss_pred EEecCChhhhccHHHHHHHHHhCCCeEEEEEECCCCCCcC---cccccCcHHHHHHHhcc
Confidence 1 2456888887776774 34445543 234 89999999987666543
No 10
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=99.89 E-value=3.9e-22 Score=197.79 Aligned_cols=174 Identities=17% Similarity=0.276 Sum_probs=134.3
Q ss_pred eEEEEEEEEecCCEEEEEEeCCC--CcccCCCCEEEEEeCCCCCCccccceeccCCCC-CcEEEEEEec--CccchHHHH
Q 007179 405 AVSIQKVAVYPGNVLALHMSKPD--RFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRTL--GDWTRQLRT 479 (614)
Q Consensus 405 ~~~v~~~~~~~~~v~~l~l~~~~--~~~~~pGQ~v~l~~p~~~~~~~hpfTias~p~~-~~l~l~ir~~--g~~T~~L~~ 479 (614)
.++|.+++.+++++++++++.++ .+.|+||||+.|++|+.+ .+|||||+|.|.+ +.++|+||.. |.+|+.|.+
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~~~~~l~l~vk~~~~G~~s~~l~~ 79 (232)
T cd06212 2 VGTVVAVEALTHDIRRLRLRLEEPEPIKFFAGQYVDITVPGTE--ETRSFSMANTPADPGRLEFIIKKYPGGLFSSFLDD 79 (232)
T ss_pred ceEEEEEeecCCCeEEEEEEcCCCCcCCcCCCCeEEEEcCCCC--cccccccCCCCCCCCEEEEEEEECCCCchhhHHhh
Confidence 46889999999999999998654 578999999999998654 7899999999865 8899999997 567877765
Q ss_pred HhhhcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhhcccch---
Q 007179 480 VFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIEE--- 556 (614)
Q Consensus 480 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~~~~~~--- 556 (614)
.++ + ++++.+.||||.+.......+++||||||+||||++|+++++.+.....+.
T Consensus 80 ~l~-------~---------------G~~v~i~gP~G~~~~~~~~~~~~l~iagG~Giap~~~~l~~~~~~~~~~~v~l~ 137 (232)
T cd06212 80 GLA-------V---------------GDPVTVTGPYGTCTLRESRDRPIVLIGGGSGMAPLLSLLRDMAASGSDRPVRFF 137 (232)
T ss_pred cCC-------C---------------CCEEEEEcCcccceecCCCCCcEEEEecCcchhHHHHHHHHHHhcCCCCcEEEE
Confidence 332 2 488999999999875444578999999999999999999999876433221
Q ss_pred ---------hHHHHHhcccccCCCE-EEEEecCCC--CCCcccccccccCChHHHHHhhcc
Q 007179 557 ---------EEENDLENGRDTGVNT-TIIIIDNNY--EPFFFWTQKKGPIQDKKSILLLGY 605 (614)
Q Consensus 557 ---------~~~~~l~~l~~~~~~~-~v~~~~~~~--~~~~~w~g~~G~i~~~~~~~~~~~ 605 (614)
.+.++++++.+...+. .+++++++. +. |.+..|++++...+.+.+.
T Consensus 138 ~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~~~---~~~~~g~~~~~~~~~~~~~ 195 (232)
T cd06212 138 YGARTARDLFYLEEIAALGEKIPDFTFIPALSESPDDEG---WSGETGLVTEVVQRNEATL 195 (232)
T ss_pred EeccchHHhccHHHHHHHHHhCCCEEEEEEECCCCCCCC---CcCCcccHHHHHHhhccCc
Confidence 2456888887666663 334555433 34 8889999988766655443
No 11
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=99.88 E-value=6.9e-22 Score=195.45 Aligned_cols=168 Identities=21% Similarity=0.353 Sum_probs=132.3
Q ss_pred eEEEEEEEEecCCEEEEEEeCCC--CcccCCCCEEEEEeCCCCCCccccceeccCCCCCcEEEEEEec--CccchHHHHH
Q 007179 405 AVSIQKVAVYPGNVLALHMSKPD--RFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRTL--GDWTRQLRTV 480 (614)
Q Consensus 405 ~~~v~~~~~~~~~v~~l~l~~~~--~~~~~pGQ~v~l~~p~~~~~~~hpfTias~p~~~~l~l~ir~~--g~~T~~L~~~ 480 (614)
.++|++++.+++++++++++.|. .+.|+||||+.|++|+.. .+|||||+|.|+++.++|+||.. |..|+.|.+.
T Consensus 3 ~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ysi~s~~~~~~i~~~i~~~~~G~~s~~l~~~ 80 (228)
T cd06209 3 EATVTEVERLSDSTIGLTLELDEAGALAFLPGQYVNLQVPGTD--ETRSYSFSSAPGDPRLEFLIRLLPGGAMSSYLRDR 80 (228)
T ss_pred eEEEEEEEEcCCCeEEEEEEcCCCCcCccCCCCEEEEEeCCCC--cccccccccCCCCCeEEEEEEEcCCCcchhhHHhc
Confidence 57899999999999999999877 578999999999998654 68999999999878999999986 6678888764
Q ss_pred hhhcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhhcccc-----
Q 007179 481 FSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE----- 555 (614)
Q Consensus 481 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~~~~~----- 555 (614)
++ + ++.+.|.||+|.+... ...++++|||||+||||++|+++++.......+
T Consensus 81 l~-------~---------------G~~v~v~gP~G~~~~~-~~~~~~vlia~GtGIaP~~~ll~~~~~~~~~~~v~l~~ 137 (228)
T cd06209 81 AQ-------P---------------GDRLTLTGPLGSFYLR-EVKRPLLMLAGGTGLAPFLSMLDVLAEDGSAHPVHLVY 137 (228)
T ss_pred cC-------C---------------CCEEEEECCcccceec-CCCCeEEEEEcccCHhHHHHHHHHHHhcCCCCcEEEEE
Confidence 32 2 4889999999998653 334789999999999999999999987653211
Q ss_pred ------h-hHHHHHhcccccCCCEEE-EEecCCCCCCcccccccccCChHHHHH
Q 007179 556 ------E-EEENDLENGRDTGVNTTI-IIIDNNYEPFFFWTQKKGPIQDKKSIL 601 (614)
Q Consensus 556 ------~-~~~~~l~~l~~~~~~~~v-~~~~~~~~~~~~w~g~~G~i~~~~~~~ 601 (614)
+ .+.++++++.+++++..+ .+++++ +. |.+.+|++++...+.
T Consensus 138 ~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~s~~-~~---~~~~~g~v~~~~~~~ 187 (228)
T cd06209 138 GVTRDADLVELDRLEALAERLPGFSFRTVVADP-DS---WHPRKGYVTDHLEAE 187 (228)
T ss_pred ecCCHHHhccHHHHHHHHHhCCCeEEEEEEcCC-Cc---cCCCcCCccHHHHHh
Confidence 1 235688888777677443 344443 33 788999999877654
No 12
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=99.88 E-value=6.7e-22 Score=196.51 Aligned_cols=175 Identities=16% Similarity=0.222 Sum_probs=133.9
Q ss_pred ceeEEEEEEEEecCCEEEEEEeCCCC--cccCCCCEEEEEeCCC-CCCccccceeccCCCC-CcEEEEEEec--CccchH
Q 007179 403 IKAVSIQKVAVYPGNVLALHMSKPDR--FRYKSGQYMFVNCAAV-SPFEWHPFSITSAPDD-DYLSVHIRTL--GDWTRQ 476 (614)
Q Consensus 403 ~~~~~v~~~~~~~~~v~~l~l~~~~~--~~~~pGQ~v~l~~p~~-~~~~~hpfTias~p~~-~~l~l~ir~~--g~~T~~ 476 (614)
|..++|++++.+++++.+++++.|+. ..++||||+.|++|.. +...+|||||+|.|++ +.++|+||.. |..|..
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~~~~l~l~v~~~~~G~~s~~ 80 (235)
T cd06217 1 WRVLRVTEIIQETPTVKTFRLAVPDGVPPPFLAGQHVDLRLTAIDGYTAQRSYSIASSPTQRGRVELTVKRVPGGEVSPY 80 (235)
T ss_pred CceEEEEEEEecCCCeEEEEEECCCCCcCCcCCcCeEEEEEecCCCceeeeeecccCCCCCCCeEEEEEEEcCCCcchHH
Confidence 35788999999999999999998876 7899999999999843 3446799999999864 5899999998 457877
Q ss_pred HHHHhhhcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhhcccc-
Q 007179 477 LRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE- 555 (614)
Q Consensus 477 L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~~~~~- 555 (614)
|.+.++ + ++.+.|.||||.+.......+++++||||+||||++|+++++.+.....+
T Consensus 81 l~~~l~-------~---------------Gd~v~i~gP~G~~~~~~~~~~~~vliagG~Giap~~~~~~~~~~~~~~~~i 138 (235)
T cd06217 81 LHDEVK-------V---------------GDLLEVRGPIGTFTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRDLGWPVPF 138 (235)
T ss_pred HHhcCC-------C---------------CCEEEEeCCceeeEeCCCCCceEEEEecCcCccHHHHHHHHHHhcCCCceE
Confidence 765432 2 48899999999976433346899999999999999999999987643322
Q ss_pred ----------h-hHHHHHhcccccCCCEEE-EEecCC-CCCCcccccccccCChHHHHHh
Q 007179 556 ----------E-EEENDLENGRDTGVNTTI-IIIDNN-YEPFFFWTQKKGPIQDKKSILL 602 (614)
Q Consensus 556 ----------~-~~~~~l~~l~~~~~~~~v-~~~~~~-~~~~~~w~g~~G~i~~~~~~~~ 602 (614)
+ .+.++|+++.+.+.+..+ .+++++ .++ |.+.+|+++++..+.+
T Consensus 139 ~l~~~~r~~~~~~~~~el~~~~~~~~~~~~~~~~s~~~~~~---~~~~~g~~~~~~l~~~ 195 (235)
T cd06217 139 RLLYSARTAEDVIFRDELEQLARRHPNLHVTEALTRAAPAD---WLGPAGRITADLIAEL 195 (235)
T ss_pred EEEEecCCHHHhhHHHHHHHHHHHCCCeEEEEEeCCCCCCC---cCCcCcEeCHHHHHhh
Confidence 1 245688888765556333 344444 344 8899999998765433
No 13
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=99.88 E-value=5.6e-22 Score=193.58 Aligned_cols=127 Identities=34% Similarity=0.600 Sum_probs=105.7
Q ss_pred EEEEEec-CCEEEEEEeCCCCcccCCCCEEEEEeCCC-CCCccccceeccCCCC--CcEEEEEEecCccchHHHHHhhhc
Q 007179 409 QKVAVYP-GNVLALHMSKPDRFRYKSGQYMFVNCAAV-SPFEWHPFSITSAPDD--DYLSVHIRTLGDWTRQLRTVFSEV 484 (614)
Q Consensus 409 ~~~~~~~-~~v~~l~l~~~~~~~~~pGQ~v~l~~p~~-~~~~~hpfTias~p~~--~~l~l~ir~~g~~T~~L~~~~~~~ 484 (614)
++++.++ +++++++++.|..+.++||||++|++|.. +.+++|||||+|.|.+ +.++|+||..+|+|+++.+.+...
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~~~G~~t~~~~~~~~~ 81 (210)
T cd06186 2 ATVELLPDSDVIRLTIPKPKPFKWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRAKKGFTTRLLRKALKS 81 (210)
T ss_pred eEEEEecCCCEEEEEEecCCCCccCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEecCChHHHHHHHHHhC
Confidence 3566777 99999999998888999999999999988 7789999999999975 899999999966676666655321
Q ss_pred CCCCCCCCCccccccCCCCCCCCEEEEeCccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhh
Q 007179 485 CRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNM 551 (614)
Q Consensus 485 ~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~ 551 (614)
. + ...+.++.|+||||.+..+...++++||||||+||||++|+++++.++.
T Consensus 82 ~-~---------------~~~~~~v~v~GP~G~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~ 132 (210)
T cd06186 82 P-G---------------GGVSLKVLVEGPYGSSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRS 132 (210)
T ss_pred c-C---------------CCceeEEEEECCCCCCccChhhCCeEEEEeccccHhhhHHHHHHHHhhh
Confidence 0 0 1135889999999998744567899999999999999999999998764
No 14
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=99.88 E-value=5.1e-22 Score=196.97 Aligned_cols=172 Identities=16% Similarity=0.209 Sum_probs=131.0
Q ss_pred EEEEEecCCEEEEEEeCCCCcccCCCCEEEEEeCCCCCCccccceeccCCCC-CcEEEEEEec--CccchHHHHHhhhcC
Q 007179 409 QKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRTL--GDWTRQLRTVFSEVC 485 (614)
Q Consensus 409 ~~~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~p~~~~~~~hpfTias~p~~-~~l~l~ir~~--g~~T~~L~~~~~~~~ 485 (614)
++++.+++++++++++.+.++.|+||||+.|++|+.+ ..|||||+|.|.+ +.++|+||.. |.+|+.|.+.++
T Consensus 2 ~~~~~~t~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~~~~~~~~~vk~~~~G~~s~~l~~~~~--- 76 (232)
T cd06190 2 VDVRELTHDVAEFRFALDGPADFLPGQYALLALPGVE--GARAYSMANLANASGEWEFIIKRKPGGAASNALFDNLE--- 76 (232)
T ss_pred CceEEcCCCEEEEEEEcCCccccCCCCEEEEECCCCC--cccCccCCcCCCCCCEEEEEEEEcCCCcchHHHhhcCC---
Confidence 4678899999999999888888999999999998754 6799999999865 7899999987 678988876432
Q ss_pred CCCCCCCCccccccCCCCCCCCEEEEeCccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhh--cccc--------
Q 007179 486 RPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNM--KAIE-------- 555 (614)
Q Consensus 486 ~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~--~~~~-------- 555 (614)
+ ++++.|+||||.+.......+++||||||+||||++|+++++.+.. ...+
T Consensus 77 ----~---------------g~~v~v~gP~G~~~~~~~~~~~illIagG~GiaP~~~~l~~~~~~~~~~~~~v~l~~~~r 137 (232)
T cd06190 77 ----P---------------GDELELDGPYGLAYLRPDEDRDIVCIAGGSGLAPMLSILRGAARSPYLSDRPVDLFYGGR 137 (232)
T ss_pred ----C---------------CCEEEEECCcccceecCCCCCcEEEEeeCcCHHHHHHHHHHHHhcccCCCCeEEEEEeec
Confidence 2 4789999999998754445679999999999999999999998751 1111
Q ss_pred ---h-hHHHHHhcccccCCCEEE-EEecCCCC-CCcccccccccCChHHHHHhhc
Q 007179 556 ---E-EEENDLENGRDTGVNTTI-IIIDNNYE-PFFFWTQKKGPIQDKKSILLLG 604 (614)
Q Consensus 556 ---~-~~~~~l~~l~~~~~~~~v-~~~~~~~~-~~~~w~g~~G~i~~~~~~~~~~ 604 (614)
+ .+.++|+++.+.+.+..+ ++++++.+ ....|.+.+|++++...+.+..
T Consensus 138 ~~~~~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~g~v~~~l~~~~~~ 192 (232)
T cd06190 138 TPSDLCALDELSALVALGARLRVTPAVSDAGSGSAAGWDGPTGFVHEVVEATLGD 192 (232)
T ss_pred CHHHHhhHHHHHHHHHhCCCEEEEEEeCCCCCCcCCCccCCcCcHHHHHHhhccC
Confidence 1 245688888776556433 33443322 1112899999999877665544
No 15
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=99.88 E-value=8.5e-22 Score=196.73 Aligned_cols=179 Identities=14% Similarity=0.195 Sum_probs=137.1
Q ss_pred hHhhhhhhhc----cceeEEEEEEEEecCCEEEEEEeCCCC-cccCCCCEEEEEeCCCCCCccccceeccCCC--CCcEE
Q 007179 392 TERLIRALRS----SIKAVSIQKVAVYPGNVLALHMSKPDR-FRYKSGQYMFVNCAAVSPFEWHPFSITSAPD--DDYLS 464 (614)
Q Consensus 392 ~dr~~r~~r~----~~~~~~v~~~~~~~~~v~~l~l~~~~~-~~~~pGQ~v~l~~p~~~~~~~hpfTias~p~--~~~l~ 464 (614)
+|+.+|+++. ....++|++++.+++++.+++++.+.. ..|+||||+.|.++..+...+|||||+|.|+ ++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~i~l~~~~~~~~~~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~~~~l~ 81 (243)
T cd06216 2 VDFYLELINPLWSARELRARVVAVRPETADMVTLTLRPNRGWPGHRAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTIT 81 (243)
T ss_pred chhhhhhcCCCcccceeEEEEEEEEEcCCCcEEEEEecCCCCCCcCCCceEEEEEEECCeEEEEEEeccCCCcCCCCeEE
Confidence 4677776543 345788999999999999999998764 5799999999999866656789999999986 78999
Q ss_pred EEEEec--CccchHHHHHhhhcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCCCCCCCCCCeEEEEEeCcCHHHHHH
Q 007179 465 VHIRTL--GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMIS 542 (614)
Q Consensus 465 l~ir~~--g~~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~~s 542 (614)
|+||.. |.+|..|.+.++ + ++++.|+||||.+..+....++++|||||+||||++|
T Consensus 82 ~~ik~~~~G~~s~~l~~~~~-------~---------------Gd~v~i~gP~G~f~l~~~~~~~~v~iagG~Giap~~s 139 (243)
T cd06216 82 LTVKAQPDGLVSNWLVNHLA-------P---------------GDVVELSQPQGDFVLPDPLPPRLLLIAAGSGITPVMS 139 (243)
T ss_pred EEEEEcCCCcchhHHHhcCC-------C---------------CCEEEEECCceeeecCCCCCCCEEEEecCccHhHHHH
Confidence 999998 788988876432 2 4889999999997654444689999999999999999
Q ss_pred HHHHHHHhhccc-----------ch-hHHHHHhcccccCCCEEEE-EecCCCCCCcccccccccCChHHHH
Q 007179 543 IVKDIVNNMKAI-----------EE-EEENDLENGRDTGVNTTII-IIDNNYEPFFFWTQKKGPIQDKKSI 600 (614)
Q Consensus 543 ~l~~l~~~~~~~-----------~~-~~~~~l~~l~~~~~~~~v~-~~~~~~~~~~~w~g~~G~i~~~~~~ 600 (614)
+++++.+..... .+ .+.++|+++.+++.+..++ +.+++ +..|+++++..+
T Consensus 140 ~l~~~~~~~~~~~i~l~~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~s~~--------~~~g~~~~~~l~ 202 (243)
T cd06216 140 MLRTLLARGPTADVVLLYYARTREDVIFADELRALAAQHPNLRLHLLYTRE--------ELDGRLSAAHLD 202 (243)
T ss_pred HHHHHHhcCCCCCEEEEEEcCChhhhHHHHHHHHHHHhCCCeEEEEEEcCC--------ccCCCCCHHHHH
Confidence 999998763211 11 3556888887666664433 33332 456888876554
No 16
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.88 E-value=4.4e-22 Score=208.61 Aligned_cols=173 Identities=20% Similarity=0.308 Sum_probs=134.9
Q ss_pred ceeEEEEEEEEecCCEEEEEEeCCC--CcccCCCCEEEEEeCCCCCCccccceeccCCCC-CcEEEEEEec--CccchHH
Q 007179 403 IKAVSIQKVAVYPGNVLALHMSKPD--RFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRTL--GDWTRQL 477 (614)
Q Consensus 403 ~~~~~v~~~~~~~~~v~~l~l~~~~--~~~~~pGQ~v~l~~p~~~~~~~hpfTias~p~~-~~l~l~ir~~--g~~T~~L 477 (614)
..+++|++++.++++++.++|+.|. .+.|+||||+.|.+|.. ++|||||+|.|++ +.++|+||.. |.+|+.|
T Consensus 102 ~~~~~V~~~~~~~~d~~~l~l~~~~~~~~~~~pGQfv~l~~~~~---~~R~ySias~p~~~~~l~~~ik~~~~G~~s~~l 178 (339)
T PRK07609 102 KLPCRVASLERVAGDVMRLKLRLPATERLQYLAGQYIEFILKDG---KRRSYSIANAPHSGGPLELHIRHMPGGVFTDHV 178 (339)
T ss_pred EEEEEEEEEEcCCCcEEEEEEEcCCCCCCccCCCCeEEEECCCC---ceeeeecCCCCCCCCEEEEEEEecCCCccHHHH
Confidence 3578899999999999999999763 57899999999999863 5799999999975 7999999987 6678888
Q ss_pred HHHhhhcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhhcccc--
Q 007179 478 RTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE-- 555 (614)
Q Consensus 478 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~~~~~-- 555 (614)
.+.++ + ++.+.++||||.+..+....+++||||||+||||++|+++++++....++
T Consensus 179 ~~~l~-------~---------------G~~v~v~gP~G~~~~~~~~~~~ivlIagGtGiaP~~s~l~~~~~~~~~~~i~ 236 (339)
T PRK07609 179 FGALK-------E---------------RDILRIEGPLGTFFLREDSDKPIVLLASGTGFAPIKSIVEHLRAKGIQRPVT 236 (339)
T ss_pred HHhcc-------C---------------CCEEEEEcCceeEEecCCCCCCEEEEecCcChhHHHHHHHHHHhcCCCCcEE
Confidence 76542 2 48899999999987644466799999999999999999999987643322
Q ss_pred ---------hhH-HHHHhcccccCCCEE-EEEecC--CCCCCcccccccccCChHHHHHhh
Q 007179 556 ---------EEE-ENDLENGRDTGVNTT-IIIIDN--NYEPFFFWTQKKGPIQDKKSILLL 603 (614)
Q Consensus 556 ---------~~~-~~~l~~l~~~~~~~~-v~~~~~--~~~~~~~w~g~~G~i~~~~~~~~~ 603 (614)
+.+ .++++++++.+++.. ++++++ +++. |.|++|++++.+.+.+.
T Consensus 237 l~~g~r~~~dl~~~e~l~~~~~~~~~~~~~~~~s~~~~~~~---~~g~~G~v~~~~~~~~~ 294 (339)
T PRK07609 237 LYWGARRPEDLYLSALAEQWAEELPNFRYVPVVSDALDDDA---WTGRTGFVHQAVLEDFP 294 (339)
T ss_pred EEEecCChHHhccHHHHHHHHHhCCCeEEEEEecCCCCCCC---ccCccCcHHHHHHhhcc
Confidence 233 335677766666743 345554 3344 89999999988766543
No 17
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.88 E-value=4.8e-22 Score=196.06 Aligned_cols=170 Identities=18% Similarity=0.298 Sum_probs=132.6
Q ss_pred EEEEEEecCCEEEEEEeCCCCcccCCCCEEEEEeCCCCCCccccceeccCCCC-CcEEEEEEec--CccchHHHHHhhhc
Q 007179 408 IQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRTL--GDWTRQLRTVFSEV 484 (614)
Q Consensus 408 v~~~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~p~~~~~~~hpfTias~p~~-~~l~l~ir~~--g~~T~~L~~~~~~~ 484 (614)
|.+++.+++++++++++.|..+.++||||+.|.+|..+. .+|||||+|.|.+ +.++|+||.. |.+|+.|.+.++
T Consensus 1 v~~~~~~~~~~~~~~l~~~~~~~~~pGq~i~l~~~~~~~-~~r~ysi~s~~~~~~~~~~~i~~~~~G~~s~~l~~~l~-- 77 (224)
T cd06187 1 VVSVERLTHDIAVVRLQLDQPLPFWAGQYVNVTVPGRPR-TWRAYSPANPPNEDGEIEFHVRAVPGGRVSNALHDELK-- 77 (224)
T ss_pred CeeeeecCCCEEEEEEEeCCCCCcCCCceEEEEcCCCCC-cceeccccCCCCCCCEEEEEEEeCCCCcchHHHhhcCc--
Confidence 356788999999999998887889999999999986542 6799999999865 7899999998 778888876442
Q ss_pred CCCCCCCCCccccccCCCCCCCCEEEEeCccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhhcccch--------
Q 007179 485 CRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIEE-------- 556 (614)
Q Consensus 485 ~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~~~~~~-------- 556 (614)
+ ++.+.|.||+|.+......++++||||||+||||++|+++++.......+.
T Consensus 78 -----~---------------G~~v~i~gP~G~~~~~~~~~~~~lliagG~GI~p~~sll~~~~~~~~~~~v~l~~~~~~ 137 (224)
T cd06187 78 -----V---------------GDRVRLSGPYGTFYLRRDHDRPVLCIAGGTGLAPLRAIVEDALRRGEPRPVHLFFGART 137 (224)
T ss_pred -----c---------------CCEEEEeCCccceEecCCCCCCEEEEecCcCHHHHHHHHHHHHhcCCCCCEEEEEecCC
Confidence 2 488999999999875444468999999999999999999999875422221
Q ss_pred ----hHHHHHhcccccCCCEEE-EEecCCCCCCcccccccccCChHHHHHhh
Q 007179 557 ----EEENDLENGRDTGVNTTI-IIIDNNYEPFFFWTQKKGPIQDKKSILLL 603 (614)
Q Consensus 557 ----~~~~~l~~l~~~~~~~~v-~~~~~~~~~~~~w~g~~G~i~~~~~~~~~ 603 (614)
.+.++|+.+.+...+..+ ++++++.+. |.|.+|++++.+.+...
T Consensus 138 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~ 186 (224)
T cd06187 138 ERDLYDLEGLLALAARHPWLRVVPVVSHEEGA---WTGRRGLVTDVVGRDGP 186 (224)
T ss_pred hhhhcChHHHHHHHHhCCCeEEEEEeCCCCCc---cCCCcccHHHHHHHhcc
Confidence 234688888766666333 445555555 88999999988766543
No 18
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=99.88 E-value=1.1e-21 Score=194.45 Aligned_cols=171 Identities=16% Similarity=0.216 Sum_probs=132.1
Q ss_pred EEEEEEEecCCEEEEEEeCCCC--cccCCCCEEEEEeCCCCCCccccceeccCCCCCcEEEEEEec--CccchHHHHHhh
Q 007179 407 SIQKVAVYPGNVLALHMSKPDR--FRYKSGQYMFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRTL--GDWTRQLRTVFS 482 (614)
Q Consensus 407 ~v~~~~~~~~~v~~l~l~~~~~--~~~~pGQ~v~l~~p~~~~~~~hpfTias~p~~~~l~l~ir~~--g~~T~~L~~~~~ 482 (614)
+|++++.+++++.+++++.|.. +.|+||||+.|.++..+...+|||||+|.|.+++++|.||.. |..|+.|.+.++
T Consensus 2 ~v~~i~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~l~~~v~~~~~G~~s~~l~~~~~ 81 (231)
T cd06191 2 RVAEVRSETPDAVTIVFAVPGPLQYGFRPGQHVTLKLDFDGEELRRCYSLCSSPAPDEISITVKRVPGGRVSNYLREHIQ 81 (231)
T ss_pred EEEEEEecCCCcEEEEEeCCCCCCCCCCCCCeEEEEEecCCeEEeeeeeccCCCCCCeEEEEEEECCCCccchHHHhcCC
Confidence 6788999999999999997664 589999999999976555578999999998878899999998 678888875442
Q ss_pred hcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhhcccc-------
Q 007179 483 EVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE------- 555 (614)
Q Consensus 483 ~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~~~~~------- 555 (614)
+ ++++.|+||||.+..+....+++||||||+||||++|+++++.+.....+
T Consensus 82 -------~---------------Gd~v~i~gP~G~f~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~~~~~~v~l~~~~ 139 (231)
T cd06191 82 -------P---------------GMTVEVMGPQGHFVYQPQPPGRYLLVAAGSGITPLMAMIRATLQTAPESDFTLIHSA 139 (231)
T ss_pred -------C---------------CCEEEEeCCccceEeCCCCCCcEEEEecCccHhHHHHHHHHHHhcCCCCCEEEEEec
Confidence 2 48899999999976544456799999999999999999999986533221
Q ss_pred ----h-hHHHHHhcccccCCCEE-EEEecCC--CCCCcccccccccCChHHHHHh
Q 007179 556 ----E-EEENDLENGRDTGVNTT-IIIIDNN--YEPFFFWTQKKGPIQDKKSILL 602 (614)
Q Consensus 556 ----~-~~~~~l~~l~~~~~~~~-v~~~~~~--~~~~~~w~g~~G~i~~~~~~~~ 602 (614)
+ .+.+||++++++..+.. ..+++++ .+. |.+.+|++.++..+.+
T Consensus 140 r~~~~~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~---~~~~~~~~~~~l~~~~ 191 (231)
T cd06191 140 RTPADMIFAQELRELADKPQRLRLLCIFTRETLDSD---LLHGRIDGEQSLGAAL 191 (231)
T ss_pred CCHHHHhHHHHHHHHHHhCCCeEEEEEECCCCCCcc---ccCCcccccHHHHHHh
Confidence 1 24568888876666633 3344432 234 8888999987766544
No 19
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=99.88 E-value=1.3e-21 Score=193.95 Aligned_cols=169 Identities=20% Similarity=0.320 Sum_probs=130.9
Q ss_pred EEEEEEEecCCEEEEEEeCCCC--cccCCCCEEEEEeCCCCCCccccceeccCCCC-CcEEEEEEec--CccchHHHHHh
Q 007179 407 SIQKVAVYPGNVLALHMSKPDR--FRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRTL--GDWTRQLRTVF 481 (614)
Q Consensus 407 ~v~~~~~~~~~v~~l~l~~~~~--~~~~pGQ~v~l~~p~~~~~~~hpfTias~p~~-~~l~l~ir~~--g~~T~~L~~~~ 481 (614)
+|++++.+++++.+++++.|.. +.++||||+.|++|..+...+|||||+|.|.+ +.++|+||.. |.+|+.|.+.+
T Consensus 2 ~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~~~~l~~~vk~~~~G~~s~~l~~~~ 81 (231)
T cd06215 2 RCVKIIQETPDVKTFRFAAPDGSLFAYKPGQFLTLELEIDGETVYRAYTLSSSPSRPDSLSITVKRVPGGLVSNWLHDNL 81 (231)
T ss_pred eEEEEEEcCCCeEEEEEECCCCCcCCcCCCCeEEEEEecCCCeEEEeeecccCCCCCCcEEEEEEEcCCCcchHHHHhcC
Confidence 6788999999999999999876 78999999999998766666899999999865 5699999998 77888776544
Q ss_pred hhcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhhcccch-----
Q 007179 482 SEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIEE----- 556 (614)
Q Consensus 482 ~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~~~~~~----- 556 (614)
+ + ++.+.|.||||.+.......+++||||||+||||++++++++.+.....+.
T Consensus 82 ~-------~---------------G~~v~i~gP~G~f~~~~~~~~~~vlIagG~Giap~~~~l~~~~~~~~~~~v~l~~~ 139 (231)
T cd06215 82 K-------V---------------GDELWASGPAGEFTLIDHPADKLLLLSAGSGITPMMSMARWLLDTRPDADIVFIHS 139 (231)
T ss_pred C-------C---------------CCEEEEEcCcceeEeCCCCCCcEEEEecCcCcchHHHHHHHHHhcCCCCcEEEEEe
Confidence 2 2 488999999999865433468999999999999999999999875432221
Q ss_pred -------hHHHHHhcccccCCCEE-EEEecCCCC-CCcccccccccCChHHHH
Q 007179 557 -------EEENDLENGRDTGVNTT-IIIIDNNYE-PFFFWTQKKGPIQDKKSI 600 (614)
Q Consensus 557 -------~~~~~l~~l~~~~~~~~-v~~~~~~~~-~~~~w~g~~G~i~~~~~~ 600 (614)
.+.++|+++.++..+.. .++++++.+ . |.+..|+++++..+
T Consensus 140 ~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~l~ 189 (231)
T cd06215 140 ARSPADIIFADELEELARRHPNFRLHLILEQPAPGA---WGGYRGRLNAELLA 189 (231)
T ss_pred cCChhhhhHHHHHHHHHHHCCCeEEEEEEccCCCCc---ccccCCcCCHHHHH
Confidence 24568888876655533 333443333 3 78999999986554
No 20
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=99.87 E-value=2.8e-21 Score=193.55 Aligned_cols=176 Identities=15% Similarity=0.187 Sum_probs=133.8
Q ss_pred ceeEEEEEEEEecCCEEEEEEeCCCC---cccCCCCEEEEEeCCCC--CCccccceeccCCCCCcEEEEEEec--Cccch
Q 007179 403 IKAVSIQKVAVYPGNVLALHMSKPDR---FRYKSGQYMFVNCAAVS--PFEWHPFSITSAPDDDYLSVHIRTL--GDWTR 475 (614)
Q Consensus 403 ~~~~~v~~~~~~~~~v~~l~l~~~~~---~~~~pGQ~v~l~~p~~~--~~~~hpfTias~p~~~~l~l~ir~~--g~~T~ 475 (614)
++.++|.+++.+++++.+++++.+.. +.++||||+.|.++..+ ...+|||||+|.|.++.++|+||.. |..|+
T Consensus 6 ~~~~~v~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~~~~l~~~ik~~~~G~~s~ 85 (247)
T cd06184 6 FRPFVVARKVAESEDITSFYLEPADGGPLPPFLPGQYLSVRVKLPGLGYRQIRQYSLSDAPNGDYYRISVKREPGGLVSN 85 (247)
T ss_pred cEEEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCEEEEEEecCCCCCceeEEeEeccCCCCCeEEEEEEEcCCCcchH
Confidence 46788999999999999999998753 68999999999997543 4578999999999878999999998 78888
Q ss_pred HHHHHhhhcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhhcccc
Q 007179 476 QLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE 555 (614)
Q Consensus 476 ~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~~~~~ 555 (614)
.|.+.++ + ++++.|.||||.+..+...+++++|||||+||||++|+++++.+.....+
T Consensus 86 ~l~~~~~-------~---------------Gd~v~i~gP~G~~~~~~~~~~~llliagGtGiaP~~~~l~~~~~~~~~~~ 143 (247)
T cd06184 86 YLHDNVK-------V---------------GDVLEVSAPAGDFVLDEASDRPLVLISAGVGITPMLSMLEALAAEGPGRP 143 (247)
T ss_pred HHHhcCC-------C---------------CCEEEEEcCCCceECCCCCCCcEEEEeccccHhHHHHHHHHHHhcCCCCc
Confidence 8876332 2 48999999999976544367899999999999999999999987522211
Q ss_pred -----------h-hHHHHHhcccccCCCEEE-EEecCCCCCC-cccccccccCChHHHH
Q 007179 556 -----------E-EEENDLENGRDTGVNTTI-IIIDNNYEPF-FFWTQKKGPIQDKKSI 600 (614)
Q Consensus 556 -----------~-~~~~~l~~l~~~~~~~~v-~~~~~~~~~~-~~w~g~~G~i~~~~~~ 600 (614)
+ .+.++++++.+.+.+..+ .+++++.+.. ..|.+..|+++.+...
T Consensus 144 i~l~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~g~~~~~~l~ 202 (247)
T cd06184 144 VTFIHAARNSAVHAFRDELEELAARLPNLKLHVFYSEPEAGDREEDYDHAGRIDLALLR 202 (247)
T ss_pred EEEEEEcCchhhHHHHHHHHHHHhhCCCeEEEEEECCCCcccccccccccCccCHHHHh
Confidence 1 345688888766566433 3455443320 0136778999876543
No 21
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.87 E-value=1.4e-21 Score=204.26 Aligned_cols=170 Identities=17% Similarity=0.279 Sum_probs=134.5
Q ss_pred ceeEEEEEEEEecCCEEEEEEeCC---CCcccCCCCEEEEEeCCCCCCccccceeccCCC-CCcEEEEEEecC--ccchH
Q 007179 403 IKAVSIQKVAVYPGNVLALHMSKP---DRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRTLG--DWTRQ 476 (614)
Q Consensus 403 ~~~~~v~~~~~~~~~v~~l~l~~~---~~~~~~pGQ~v~l~~p~~~~~~~hpfTias~p~-~~~l~l~ir~~g--~~T~~ 476 (614)
...++|++++.+++++.+++|+.+ +.+.|+||||+.|.+|+.. .+|||||+|.|+ ++.++|+||..+ .+|+.
T Consensus 106 ~~~~~V~~i~~~s~di~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~--~~R~ySias~p~~~~~l~~~ik~~~~G~~s~~ 183 (340)
T PRK11872 106 KISGVVTAVELVSETTAILHLDASAHGRQLDFLPGQYARLQIPGTD--DWRSYSFANRPNATNQLQFLIRLLPDGVMSNY 183 (340)
T ss_pred eeeEEEEEEEecCCCeEEEEEEcCCCCCccCcCCCCEEEEEeCCCC--ceeecccCCCCCCCCeEEEEEEECCCCcchhh
Confidence 356889999999999999999876 4678999999999998643 589999999986 578999999964 46777
Q ss_pred HHHHhhhcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhhcccc-
Q 007179 477 LRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE- 555 (614)
Q Consensus 477 L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~~~~~- 555 (614)
|.+.++ + ++.+.|+||||.+..+ ...+++||||||+||||++|+++++.+...+++
T Consensus 184 L~~~l~-------~---------------G~~v~i~gP~G~f~l~-~~~~~~vliagGtGiaP~~s~l~~~~~~~~~~~v 240 (340)
T PRK11872 184 LRERCQ-------V---------------GDEILFEAPLGAFYLR-EVERPLVFVAGGTGLSAFLGMLDELAEQGCSPPV 240 (340)
T ss_pred HhhCCC-------C---------------CCEEEEEcCcceeEeC-CCCCcEEEEeCCcCccHHHHHHHHHHHcCCCCcE
Confidence 765432 2 5899999999998754 345799999999999999999999987543222
Q ss_pred ----------hh-HHHHHhcccccCCCE-EEEEecCCCCCCcccccccccCChHHHH
Q 007179 556 ----------EE-EENDLENGRDTGVNT-TIIIIDNNYEPFFFWTQKKGPIQDKKSI 600 (614)
Q Consensus 556 ----------~~-~~~~l~~l~~~~~~~-~v~~~~~~~~~~~~w~g~~G~i~~~~~~ 600 (614)
+. +.++|+++++..++. ...+++++.++ |.|.+|+|++....
T Consensus 241 ~l~~g~r~~~dl~~~~el~~~~~~~~~~~~~~~~s~~~~~---~~g~~g~v~~~l~~ 294 (340)
T PRK11872 241 HLYYGVRHAADLCELQRLAAYAERLPNFRYHPVVSKASAD---WQGKRGYIHEHFDK 294 (340)
T ss_pred EEEEecCChHHhccHHHHHHHHHHCCCcEEEEEEeCCCCc---CCCceeeccHHHHH
Confidence 22 456898887777773 44455666666 99999999987765
No 22
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.87 E-value=2.3e-21 Score=191.63 Aligned_cols=170 Identities=18% Similarity=0.282 Sum_probs=131.1
Q ss_pred eEEEEEEEEecCCEEEEEEeCCCCcccCCCCEEEEEeCCCCCCccccceeccCCC-CCcEEEEEEec--CccchHHHHHh
Q 007179 405 AVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRTL--GDWTRQLRTVF 481 (614)
Q Consensus 405 ~~~v~~~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~p~~~~~~~hpfTias~p~-~~~l~l~ir~~--g~~T~~L~~~~ 481 (614)
.++|.+++.+++++++++++.++.+.++||||+.|++++.. ..|||||+|+|. ++.++|+||.. |.+|+.|.+.+
T Consensus 2 ~~~v~~~~~~t~~~~~~~l~~~~~~~~~pGQ~~~l~~~~~~--~~r~ysi~s~~~~~~~l~~~vk~~~~G~~s~~l~~~l 79 (227)
T cd06213 2 RGTIVAQERLTHDIVRLTVQLDRPIAYKAGQYAELTLPGLP--AARSYSFANAPQGDGQLSFHIRKVPGGAFSGWLFGAD 79 (227)
T ss_pred eEEEEEEeecCCCEEEEEEecCCCCCcCCCCEEEEEeCCCC--cccccccCCCCCCCCEEEEEEEECCCCcchHHHHhcC
Confidence 46788999999999999999877788999999999998654 689999999986 47899999987 77898887654
Q ss_pred hhcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhhcccch-----
Q 007179 482 SEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIEE----- 556 (614)
Q Consensus 482 ~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~~~~~~----- 556 (614)
+ + ++++.|+||||.+... ...+++||||||+||||++|+++++.+.....+.
T Consensus 80 ~-------~---------------G~~v~i~gP~G~~~~~-~~~~~~lliagG~GiaP~~~~~~~~~~~~~~~~i~l~~~ 136 (227)
T cd06213 80 R-------T---------------GERLTVRGPFGDFWLR-PGDAPILCIAGGSGLAPILAILEQARAAGTKRDVTLLFG 136 (227)
T ss_pred C-------C---------------CCEEEEeCCCcceEeC-CCCCcEEEEecccchhHHHHHHHHHHhcCCCCcEEEEEe
Confidence 2 2 4889999999998753 3457999999999999999999999876433221
Q ss_pred -------hHHHHHhcccccC-CCEE-EEEecCC--CCCCcccccccccCChHHHHHh
Q 007179 557 -------EEENDLENGRDTG-VNTT-IIIIDNN--YEPFFFWTQKKGPIQDKKSILL 602 (614)
Q Consensus 557 -------~~~~~l~~l~~~~-~~~~-v~~~~~~--~~~~~~w~g~~G~i~~~~~~~~ 602 (614)
.+.++++++++.. .+.. +.+++++ +.. |.|.+|++++...+.+
T Consensus 137 ~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~---~~g~~g~v~~~l~~~~ 190 (227)
T cd06213 137 ARTQRDLYALDEIAAIAARWRGRFRFIPVLSEEPADSS---WKGARGLVTEHIAEVL 190 (227)
T ss_pred eCCHHHhccHHHHHHHHHhccCCeEEEEEecCCCCCCC---ccCCcccHHHHHHhhc
Confidence 2346888776543 3433 3344432 234 8899999988766544
No 23
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=99.87 E-value=1.8e-21 Score=194.22 Aligned_cols=166 Identities=19% Similarity=0.275 Sum_probs=129.7
Q ss_pred EEEEEEEecCCEEEEEEeCCCCcccCCCCEEEEEeCCC-CCCccccceeccCCCCCcEEEEEEec--CccchHHHHHhhh
Q 007179 407 SIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAV-SPFEWHPFSITSAPDDDYLSVHIRTL--GDWTRQLRTVFSE 483 (614)
Q Consensus 407 ~v~~~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~p~~-~~~~~hpfTias~p~~~~l~l~ir~~--g~~T~~L~~~~~~ 483 (614)
+|++++.+++++++++++.+..+.|+||||+.|+++.. +...+|||||+|.|+++.++|+||+. |..|+.|.+ ++
T Consensus 1 ~v~~~~~~t~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~~~i~~~i~~~~~G~~s~~l~~-l~- 78 (241)
T cd06195 1 TVLKRRDWTDDLFSFRVTRDIPFRFQAGQFTKLGLPNDDGKLVRRAYSIASAPYEENLEFYIILVPDGPLTPRLFK-LK- 78 (241)
T ss_pred CeEEEEEcCCCEEEEEEcCCCCCccCCCCeEEEeccCCCCCeeeecccccCCCCCCeEEEEEEEecCCCCchHHhc-CC-
Confidence 36788899999999999988778899999999999876 66678999999999888999999976 778888763 31
Q ss_pred cCCCCCCCCCccccccCCCCCCCCEEEEe-CccCCCCCCCC-CCCeEEEEEeCcCHHHHHHHHHHHHHhhcccc------
Q 007179 484 VCRPPPNGISGLLRAEGHNNPDFPRVLID-GPYGAPAQDYK-EYEVVLLVGLGIGATPMISIVKDIVNNMKAIE------ 555 (614)
Q Consensus 484 ~~~~~~~g~~~~~~~~~~~~~~~~~v~i~-GPyG~~~~~~~-~~~~vvlIagG~GItp~~s~l~~l~~~~~~~~------ 555 (614)
+ ++.+.+. ||+|.+..+.. ..+++||||||+||||++|+++++....+..+
T Consensus 79 ------~---------------Gd~v~v~~gP~G~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~~~~~~v~l~~~ 137 (241)
T cd06195 79 ------P---------------GDTIYVGKKPTGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIWERFDKIVLVHG 137 (241)
T ss_pred ------C---------------CCEEEECcCCCCceeecCCCCCceEEEEeeccchhhHHHHHHHHHhhCCCCcEEEEEc
Confidence 2 4889999 99999864433 46899999999999999999999985533222
Q ss_pred -----h-hHHHHHhccccc-CCCEE-EEEecCCCCCCcccccccccCChHHH
Q 007179 556 -----E-EEENDLENGRDT-GVNTT-IIIIDNNYEPFFFWTQKKGPIQDKKS 599 (614)
Q Consensus 556 -----~-~~~~~l~~l~~~-~~~~~-v~~~~~~~~~~~~w~g~~G~i~~~~~ 599 (614)
+ .+.++|+++.+. ..+.. .++++++.+. | +.+|++++.+.
T Consensus 138 ~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~---~-~~~g~v~~~l~ 185 (241)
T cd06195 138 VRYAEELAYQDEIEALAKQYNGKFRYVPIVSREKEN---G-ALTGRIPDLIE 185 (241)
T ss_pred cCCHHHhhhHHHHHHHHhhcCCCEEEEEEECcCCcc---C-CCceEhHHhhh
Confidence 1 245688888665 34533 3455655555 6 78899987644
No 24
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=99.87 E-value=1.7e-21 Score=198.83 Aligned_cols=172 Identities=16% Similarity=0.225 Sum_probs=132.7
Q ss_pred eeEEEEEEEEecCCEEEEEEeCCCC--cccCCCCEEEEEeCCC-----------------------------CCCccccc
Q 007179 404 KAVSIQKVAVYPGNVLALHMSKPDR--FRYKSGQYMFVNCAAV-----------------------------SPFEWHPF 452 (614)
Q Consensus 404 ~~~~v~~~~~~~~~v~~l~l~~~~~--~~~~pGQ~v~l~~p~~-----------------------------~~~~~hpf 452 (614)
..++|++++.+++|+.+++++.|.. +.|+||||+.|.+|.. +....|||
T Consensus 10 ~~~~v~~~~~~~~d~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~y 89 (283)
T cd06188 10 WECTVISNDNVATFIKELVLKLPSGEEIAFKAGGYIQIEIPAYEIAYADFDVAEKYRADWDKFGLWQLVFKHDEPVSRAY 89 (283)
T ss_pred EEEEEEEcccccchhhheEEecCCCceeeecCCceEEEEcCCccccccccccchhhhhHHhhhcccccccccCCcccccc
Confidence 5678999999999999999998875 7899999999999853 12235999
Q ss_pred eeccCCC-CCcEEEEEEe-----------cCccchHHHHHhhhcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCCCC
Q 007179 453 SITSAPD-DDYLSVHIRT-----------LGDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQ 520 (614)
Q Consensus 453 Tias~p~-~~~l~l~ir~-----------~g~~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~ 520 (614)
||+|+|. ++.++|+||. .|..|+.|.+ ++ + ++++.|.||+|.+..
T Consensus 90 Sias~p~~~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~-l~-------~---------------Gd~v~i~gP~G~f~l 146 (283)
T cd06188 90 SLANYPAEEGELKLNVRIATPPPGNSDIPPGIGSSYIFN-LK-------P---------------GDKVTASGPFGEFFI 146 (283)
T ss_pred CcCCCCCCCCeEEEEEEEeccCCccCCCCCceehhHHhc-CC-------C---------------CCEEEEECccccccc
Confidence 9999996 6789999996 3557777765 31 2 589999999999875
Q ss_pred CCCCCCeEEEEEeCcCHHHHHHHHHHHHHhhcc-cc-----------h-hHHHHHhcccccCCCEEEE-EecCCC--CCC
Q 007179 521 DYKEYEVVLLVGLGIGATPMISIVKDIVNNMKA-IE-----------E-EEENDLENGRDTGVNTTII-IIDNNY--EPF 584 (614)
Q Consensus 521 ~~~~~~~vvlIagG~GItp~~s~l~~l~~~~~~-~~-----------~-~~~~~l~~l~~~~~~~~v~-~~~~~~--~~~ 584 (614)
. ...+++||||||+||||++||+++++..... .+ + .+.++|+++.+.+++..++ +++++. +.
T Consensus 147 ~-~~~~~~vlIAgGtGItP~~s~l~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~- 224 (283)
T cd06188 147 K-DTDREMVFIGGGAGMAPLRSHIFHLLKTLKSKRKISFWYGARSLKELFYQEEFEALEKEFPNFKYHPVLSEPQPEDN- 224 (283)
T ss_pred c-CCCCcEEEEEecccHhHHHHHHHHHHhcCCCCceEEEEEecCCHHHhhHHHHHHHHHHHCCCeEEEEEECCCCccCC-
Confidence 4 3567999999999999999999998765321 11 1 2456898887777774443 445433 44
Q ss_pred cccccccccCChHHHHHh
Q 007179 585 FFWTQKKGPIQDKKSILL 602 (614)
Q Consensus 585 ~~w~g~~G~i~~~~~~~~ 602 (614)
|.|.+|+|++...+..
T Consensus 225 --~~~~~G~v~~~~~~~~ 240 (283)
T cd06188 225 --WDGYTGFIHQVLLENY 240 (283)
T ss_pred --CCCcceeecHHHHHHH
Confidence 8899999998877643
No 25
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=99.86 E-value=8.2e-21 Score=189.45 Aligned_cols=171 Identities=18% Similarity=0.275 Sum_probs=133.2
Q ss_pred eeEEEEEEEEecCCEEEEEEeCCCC----cccCCCCEEEEEeCCCCCCccccceeccCCCCCcEEEEEEec--CccchHH
Q 007179 404 KAVSIQKVAVYPGNVLALHMSKPDR----FRYKSGQYMFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRTL--GDWTRQL 477 (614)
Q Consensus 404 ~~~~v~~~~~~~~~v~~l~l~~~~~----~~~~pGQ~v~l~~p~~~~~~~hpfTias~p~~~~l~l~ir~~--g~~T~~L 477 (614)
+.++|++++.+++++.+++++.|.+ +.|+||||+.|.+|..+...+||||++|.|+++.++|+||.. |..|..|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~~~~l~~~i~~~~~G~~s~~l 81 (241)
T cd06214 2 HPLTVAEVVRETADAVSITFDVPEELRDAFRYRPGQFLTLRVPIDGEEVRRSYSICSSPGDDELRITVKRVPGGRFSNWA 81 (241)
T ss_pred ceEEEEEEEecCCCeEEEEEecCcccCCCCCcCCCCeEEEEeecCCCeeeeeeeecCCCCCCcEEEEEEEcCCCccchhH
Confidence 4678999999999999999998764 579999999999996566678999999999877999999998 5678877
Q ss_pred HHHhhhcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCCCCCCC-CCCeEEEEEeCcCHHHHHHHHHHHHHhhcc---
Q 007179 478 RTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYK-EYEVVLLVGLGIGATPMISIVKDIVNNMKA--- 553 (614)
Q Consensus 478 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~-~~~~vvlIagG~GItp~~s~l~~l~~~~~~--- 553 (614)
.+.++ + ++.+.|.||+|.+..... .++++||||||+||||++|+++++......
T Consensus 82 ~~~~~-------~---------------G~~v~i~gP~G~~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~~~~~~v 139 (241)
T cd06214 82 NDELK-------A---------------GDTLEVMPPAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALAREPASRV 139 (241)
T ss_pred HhccC-------C---------------CCEEEEeCCccccccCCCCCCCcEEEEecccChhhHHHHHHHHHhcCCCCcE
Confidence 64332 2 478999999999875444 478999999999999999999999876421
Q ss_pred --------cch-hHHHHHhcccccCC-CEE-EEEecCCCCCCcccccccccCChHHH
Q 007179 554 --------IEE-EEENDLENGRDTGV-NTT-IIIIDNNYEPFFFWTQKKGPIQDKKS 599 (614)
Q Consensus 554 --------~~~-~~~~~l~~l~~~~~-~~~-v~~~~~~~~~~~~w~g~~G~i~~~~~ 599 (614)
..+ .+.++++++.+..+ +.. .+++++++.. |.+..|++++...
T Consensus 140 ~l~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~ 193 (241)
T cd06214 140 TLVYGNRTEASVIFREELADLKARYPDRLTVIHVLSREQGD---PDLLRGRLDAAKL 193 (241)
T ss_pred EEEEEeCCHHHhhHHHHHHHHHHhCcCceEEEEEecCCCCC---cccccCccCHHHH
Confidence 111 34568888866555 332 3455555555 8888999987654
No 26
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.86 E-value=6.8e-21 Score=198.75 Aligned_cols=171 Identities=15% Similarity=0.257 Sum_probs=130.0
Q ss_pred eeEEEEEEEEecCCEEEEEEeCCCCcccCCCCEEEEEeCCCCCCccccceeccCCCC-CcEEEEEEec--CccchHHHHH
Q 007179 404 KAVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRTL--GDWTRQLRTV 480 (614)
Q Consensus 404 ~~~~v~~~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~p~~~~~~~hpfTias~p~~-~~l~l~ir~~--g~~T~~L~~~ 480 (614)
..++|++++.+++++..+++..++.+.|+||||+.|.++... ...|||||+|.|.+ +.++|+||+. |..|+.|.+.
T Consensus 10 ~~~~V~~i~~~t~~v~~l~l~~~~~~~f~pGQfv~l~~~~~~-~~~R~ySias~p~~~~~l~i~Vk~~~~G~~S~~L~~~ 88 (332)
T PRK10684 10 NRMQVHSIVQETPDVWTISLICHDFYPYRAGQYALVSIRNSA-ETLRAYTLSSTPGVSEFITLTVRRIDDGVGSQWLTRD 88 (332)
T ss_pred eeEEEEEEEccCCCeEEEEEcCCCCCCcCCCCEEEEEecCCC-EeeeeecccCCCCCCCcEEEEEEEcCCCcchhHHHhc
Confidence 467899999999999999999877788999999999998532 35799999999964 6899999997 6678888754
Q ss_pred hhhcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhhcccc-----
Q 007179 481 FSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE----- 555 (614)
Q Consensus 481 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~~~~~----- 555 (614)
++ + |+++.+.||+|.+..+....+++||||||+||||++||++++.+.....+
T Consensus 89 l~-------~---------------Gd~v~v~gP~G~f~l~~~~~~~~vliAgG~GItP~~sml~~~~~~~~~~~v~l~y 146 (332)
T PRK10684 89 VK-------R---------------GDYLWLSDAMGEFTCDDKAEDKYLLLAAGCGVTPIMSMRRWLLKNRPQADVQVIF 146 (332)
T ss_pred CC-------C---------------CCEEEEeCCccccccCCCCCCcEEEEecCcCcchHHHHHHHHHhcCCCCCEEEEE
Confidence 42 2 58999999999987544456789999999999999999999886533221
Q ss_pred ------h-hHHHHHhcccccCCCEEEEEecCCCCCCcccccccccCChHHHH
Q 007179 556 ------E-EEENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSI 600 (614)
Q Consensus 556 ------~-~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~w~g~~G~i~~~~~~ 600 (614)
+ .+.+||+++.+.+++..++++...... ....+|+++++...
T Consensus 147 ~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~---~~~~~grl~~~~l~ 195 (332)
T PRK10684 147 NVRTPQDVIFADEWRQLKQRYPQLNLTLVAENNAT---EGFIAGRLTRELLQ 195 (332)
T ss_pred eCCChHHhhhHHHHHHHHHHCCCeEEEEEeccCCC---CCccccccCHHHHH
Confidence 1 355699988777776444433222111 22368999976554
No 27
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=99.86 E-value=7.3e-21 Score=190.80 Aligned_cols=165 Identities=25% Similarity=0.385 Sum_probs=125.8
Q ss_pred EEEEEEecCCEEEEEEeCCCC----cccCCCCEEEEEeCCCCCCccccceeccCCC-CCcEEEEEEecCccchHHHHHhh
Q 007179 408 IQKVAVYPGNVLALHMSKPDR----FRYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRTLGDWTRQLRTVFS 482 (614)
Q Consensus 408 v~~~~~~~~~v~~l~l~~~~~----~~~~pGQ~v~l~~p~~~~~~~hpfTias~p~-~~~l~l~ir~~g~~T~~L~~~~~ 482 (614)
|.+++.+++++..++++.+.+ +.|+||||+.|.+|..+ .|||||+|+|+ ++.++|+||..|.+|+.|.+ ++
T Consensus 1 v~~i~~~t~~v~~~~l~~~~~~~~~~~~~pGQ~i~l~~~~~~---~~pySi~s~~~~~~~l~~~Ik~~G~~S~~L~~-l~ 76 (253)
T cd06221 1 IVEVVDETEDIKTFTLRLEDDDEELFTFKPGQFVMLSLPGVG---EAPISISSDPTRRGPLELTIRRVGRVTEALHE-LK 76 (253)
T ss_pred CceEEeccCCceEEEEEeCCCccccCCcCCCCEEEEEcCCCC---ccceEecCCCCCCCeEEEEEEeCChhhHHHHc-CC
Confidence 356788999888887776543 78999999999998754 39999999996 67899999999999988863 31
Q ss_pred hcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCCCCCCC-CCCeEEEEEeCcCHHHHHHHHHHHHHhhcc-cc-----
Q 007179 483 EVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYK-EYEVVLLVGLGIGATPMISIVKDIVNNMKA-IE----- 555 (614)
Q Consensus 483 ~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~-~~~~vvlIagG~GItp~~s~l~~l~~~~~~-~~----- 555 (614)
+ ++++.++||||.+..... ..+++||||||+||||++||++++++.... .+
T Consensus 77 -------~---------------G~~v~i~gP~G~~f~~~~~~~~~iv~IA~G~GitP~ls~l~~~~~~~~~~~~i~Li~ 134 (253)
T cd06221 77 -------P---------------GDTVGLRGPFGNGFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDNREDYGKVTLLY 134 (253)
T ss_pred -------C---------------CCEEEEECCcCCCcccccccCCeEEEEccccchhHHHHHHHHHHhccccCCcEEEEE
Confidence 2 488999999999543222 568999999999999999999999975321 11
Q ss_pred ------h-hHHHHHhcccccCCC-EEEEEecCCCCCCcccccccccCChHHHHHh
Q 007179 556 ------E-EEENDLENGRDTGVN-TTIIIIDNNYEPFFFWTQKKGPIQDKKSILL 602 (614)
Q Consensus 556 ------~-~~~~~l~~l~~~~~~-~~v~~~~~~~~~~~~w~g~~G~i~~~~~~~~ 602 (614)
+ .+.++|+++.+. .+ ...++++++.++ |.+..|++++.+.+..
T Consensus 135 ~~r~~~~~~~~~~L~~l~~~-~~~~~~~~~s~~~~~---~~~~~g~v~~~l~~~~ 185 (253)
T cd06221 135 GARTPEDLLFKEELKEWAKR-SDVEVILTVDRAEEG---WTGNVGLVTDLLPELT 185 (253)
T ss_pred ecCChHHcchHHHHHHHHhc-CCeEEEEEeCCCCCC---ccCCccccchhHHhcC
Confidence 1 245688888765 45 334455665556 8889999988666543
No 28
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=99.86 E-value=1e-20 Score=186.32 Aligned_cols=160 Identities=23% Similarity=0.327 Sum_probs=125.9
Q ss_pred EEEEecCCEEEEEEeCCCCcccCCCCEEEEEeCCCCCCccccceeccCCCC-CcEEEEEEec--CccchHHHHHhhhcCC
Q 007179 410 KVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRTL--GDWTRQLRTVFSEVCR 486 (614)
Q Consensus 410 ~~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~p~~~~~~~hpfTias~p~~-~~l~l~ir~~--g~~T~~L~~~~~~~~~ 486 (614)
+++.+++++..++++.++...|+||||+.|.+|..+...+|||||+|.|.+ +.++|+||.. |.+|+.|.+..
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~~~~l~vk~~~~G~~s~~l~~~~----- 76 (223)
T cd00322 2 ATEDVTDDVRLFRLQLPNGFSFKPGQYVDLHLPGDGRGLRRAYSIASSPDEEGELELTVKIVPGGPFSAWLHDLK----- 76 (223)
T ss_pred ceEEecCCeEEEEEecCCCCCcCCCcEEEEEecCCCCcceeeeeccCCCCCCCeEEEEEEEeCCCchhhHHhcCC-----
Confidence 356678999999999887788999999999999766678999999999976 8999999999 88999887531
Q ss_pred CCCCCCCccccccCCCCCCCCEEEEeCccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhhcccc-----------
Q 007179 487 PPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE----------- 555 (614)
Q Consensus 487 ~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~~~~~----------- 555 (614)
+ ++++.|.||+|.+......++++||||||+||||++|+++++.+.....+
T Consensus 77 ---~---------------G~~v~i~gP~G~~~~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~~~~~~v~l~~~~r~~~ 138 (223)
T cd00322 77 ---P---------------GDEVEVSGPGGDFFLPLEESGPVVLIAGGIGITPFRSMLRHLAADKPGGEITLLYGARTPA 138 (223)
T ss_pred ---C---------------CCEEEEECCCcccccCcccCCcEEEEecCCchhHHHHHHHHHHhhCCCCcEEEEEecCCHH
Confidence 2 48999999999986445667899999999999999999999987632211
Q ss_pred h-hHHHHHhcccccCCCEEE-EEecCCCCCCcccccccccCC
Q 007179 556 E-EEENDLENGRDTGVNTTI-IIIDNNYEPFFFWTQKKGPIQ 595 (614)
Q Consensus 556 ~-~~~~~l~~l~~~~~~~~v-~~~~~~~~~~~~w~g~~G~i~ 595 (614)
+ .+.++|+++.+.+.+..+ .+++++... |.+..|++.
T Consensus 139 ~~~~~~el~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 177 (223)
T cd00322 139 DLLFLDELEELAKEGPNFRLVLALSRESEA---KLGPGGRID 177 (223)
T ss_pred HhhHHHHHHHHHHhCCCeEEEEEecCCCCC---CCcccceee
Confidence 1 245688888776666433 455555555 666666665
No 29
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=99.85 E-value=2.5e-20 Score=199.89 Aligned_cols=175 Identities=17% Similarity=0.184 Sum_probs=133.0
Q ss_pred cceeEEEEEEEEecCCEEEEEEeCCC---CcccCCCCEEEEEeCCCC--CCccccceeccCCCCCcEEEEEEec--Cccc
Q 007179 402 SIKAVSIQKVAVYPGNVLALHMSKPD---RFRYKSGQYMFVNCAAVS--PFEWHPFSITSAPDDDYLSVHIRTL--GDWT 474 (614)
Q Consensus 402 ~~~~~~v~~~~~~~~~v~~l~l~~~~---~~~~~pGQ~v~l~~p~~~--~~~~hpfTias~p~~~~l~l~ir~~--g~~T 474 (614)
.++.++|++++.+++++..++++.++ ...|+||||+.|.++..+ ..++|||||+|.|+++.++|+||+. |..|
T Consensus 153 ~~~~~~V~~~~~~t~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySias~p~~~~l~~~Vk~~~~G~~S 232 (399)
T PRK13289 153 GWRDFRVVKKVPESEVITSFYLEPVDGGPVADFKPGQYLGVRLDPEGEEYQEIRQYSLSDAPNGKYYRISVKREAGGKVS 232 (399)
T ss_pred CcEEEEEEEEEECCCCEEEEEEEcCCCCcCCCCCCCCeEEEEEecCCccccceeEEEeeeCCCCCeEEEEEEECCCCeeh
Confidence 45678999999999999999999764 268999999999997543 2356999999999888999999998 7889
Q ss_pred hHHHHHhhhcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhhccc
Q 007179 475 RQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAI 554 (614)
Q Consensus 475 ~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~~~~ 554 (614)
..|.+.++ + |+++.|.||+|.+..+....+++|||||||||||++|++++++......
T Consensus 233 ~~L~~~l~-------~---------------Gd~v~v~gP~G~f~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~ 290 (399)
T PRK13289 233 NYLHDHVN-------V---------------GDVLELAAPAGDFFLDVASDTPVVLISGGVGITPMLSMLETLAAQQPKR 290 (399)
T ss_pred HHHhhcCC-------C---------------CCEEEEEcCccccccCCCCCCcEEEEecCccHHHHHHHHHHHHhcCCCC
Confidence 88876442 2 4899999999998755445689999999999999999999998653322
Q ss_pred c-----------h-hHHHHHhcccccCCCE-EEEEecCCCCCCccccc----ccccCChHHHH
Q 007179 555 E-----------E-EEENDLENGRDTGVNT-TIIIIDNNYEPFFFWTQ----KKGPIQDKKSI 600 (614)
Q Consensus 555 ~-----------~-~~~~~l~~l~~~~~~~-~v~~~~~~~~~~~~w~g----~~G~i~~~~~~ 600 (614)
+ + .+.++|+++.+.+++. ..++++++.+. .|.+ ..|+++++...
T Consensus 291 ~v~l~~~~r~~~~~~~~~eL~~l~~~~~~~~~~~~~s~~~~~--~~~~~~~~~~g~i~~~~l~ 351 (399)
T PRK13289 291 PVHFIHAARNGGVHAFRDEVEALAARHPNLKAHTWYREPTEQ--DRAGEDFDSEGLMDLEWLE 351 (399)
T ss_pred CEEEEEEeCChhhchHHHHHHHHHHhCCCcEEEEEECCCccc--cccCCcccccCcccHHHHH
Confidence 2 1 2456999887766663 34445544321 0333 46999976544
No 30
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=99.85 E-value=2e-20 Score=186.95 Aligned_cols=168 Identities=13% Similarity=0.138 Sum_probs=124.9
Q ss_pred ceeEEEEEEEEecCCEEEEEEeCCCCcccCCCCEEEEEeCCCCCCccccceeccCCCCCcEEEEEEec--CccchHHHHH
Q 007179 403 IKAVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRTL--GDWTRQLRTV 480 (614)
Q Consensus 403 ~~~~~v~~~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~p~~~~~~~hpfTias~p~~~~l~l~ir~~--g~~T~~L~~~ 480 (614)
+..++|++++.+++++++++++.|. ..|+||||+.|.++..+....|||||+|.|+++.++++||.. |..|+.|.+
T Consensus 4 ~~~~~V~~i~~~t~~v~~l~l~~~~-~~~~pGQfv~l~~~~~g~~~~R~ySias~p~~~~l~~~ik~~~~G~~S~~L~~- 81 (248)
T PRK10926 4 WVTGKVTKVQNWTDALFSLTVHAPV-DPFTAGQFTKLGLEIDGERVQRAYSYVNAPDNPDLEFYLVTVPEGKLSPRLAA- 81 (248)
T ss_pred cEEEEEEEEEEcCCCeEEEEEeCCC-CCCCCCCEEEEEEecCCcEEEeeecccCCCCCCeEEEEEEEeCCCCcChHHHh-
Confidence 5678999999999999999998763 379999999999975444467999999999878999999997 778888863
Q ss_pred hhhcCCCCCCCCCccccccCCCCCCCCEEEEeCccCC-CCCCCC-CCCeEEEEEeCcCHHHHHHHHHHHHHhhcccc---
Q 007179 481 FSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGA-PAQDYK-EYEVVLLVGLGIGATPMISIVKDIVNNMKAIE--- 555 (614)
Q Consensus 481 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~-~~~~~~-~~~~vvlIagG~GItp~~s~l~~l~~~~~~~~--- 555 (614)
++ + |+++.|.||+|. +..+.. ..+++|||||||||||++|+++++.+.....+
T Consensus 82 l~-------~---------------Gd~v~i~gp~~g~f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~~~~~~v~l 139 (248)
T PRK10926 82 LK-------P---------------GDEVQVVSEAAGFFVLDEVPDCETLWMLATGTAIGPYLSILQEGKDLERFKNLVL 139 (248)
T ss_pred CC-------C---------------CCEEEEecCCCcceEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhhCCCCcEEE
Confidence 32 2 589999999844 433222 34799999999999999999999875433221
Q ss_pred --------h-hHHHHHhcccccCC-CEE-EEEecCCCCCCcccccccccCChHH
Q 007179 556 --------E-EEENDLENGRDTGV-NTT-IIIIDNNYEPFFFWTQKKGPIQDKK 598 (614)
Q Consensus 556 --------~-~~~~~l~~l~~~~~-~~~-v~~~~~~~~~~~~w~g~~G~i~~~~ 598 (614)
+ .+.++|+++++..+ +.. .++++++.. +.+.+|+|++.+
T Consensus 140 ~~g~r~~~d~~~~~el~~l~~~~~~~~~v~~~~s~~~~----~~~~~G~v~~~i 189 (248)
T PRK10926 140 VHAARYAADLSYLPLMQELEQRYEGKLRIQTVVSRETA----PGSLTGRVPALI 189 (248)
T ss_pred EEeCCcHHHHHHHHHHHHHHHhCcCCEEEEEEECCCCC----CCCcCCccchhh
Confidence 2 24568988876654 443 344554322 345689987643
No 31
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=99.85 E-value=2e-20 Score=192.58 Aligned_cols=172 Identities=17% Similarity=0.136 Sum_probs=130.5
Q ss_pred eeEEEEEEEEec-----CCEEEEEEeCCCCcccCCCCEEEEEeCCCC------CCccccceeccCCCC-----CcEEEEE
Q 007179 404 KAVSIQKVAVYP-----GNVLALHMSKPDRFRYKSGQYMFVNCAAVS------PFEWHPFSITSAPDD-----DYLSVHI 467 (614)
Q Consensus 404 ~~~~v~~~~~~~-----~~v~~l~l~~~~~~~~~pGQ~v~l~~p~~~------~~~~hpfTias~p~~-----~~l~l~i 467 (614)
..++|++++.++ +++.+|+++.+.++.|+||||+.|.+|+.. ...+|+|||+|+|.+ ..++|+|
T Consensus 25 ~~~~V~~i~~~~~p~~~~~v~~l~l~~~~~~~f~aGQy~~l~~~~~~~~~~g~~~~~R~YSIaS~p~~~~~~~~~lel~V 104 (307)
T PLN03116 25 YTATIVSVERIVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGTNPKKPGAPHNVRLYSIASTRYGDDFDGKTASLCV 104 (307)
T ss_pred EEEEEEeeEEcccCCCCCceEEEEEecCCCCceecCceEeeeCCCCChhhcCCcCCceeEEecCCCCCcCCCCCEEEEEE
Confidence 478899999998 899999999988899999999999877421 124799999999842 2799999
Q ss_pred Eec---------------CccchHHHHHhhhcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCCCCC-C-CCCCeEEE
Q 007179 468 RTL---------------GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQD-Y-KEYEVVLL 530 (614)
Q Consensus 468 r~~---------------g~~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~-~-~~~~~vvl 530 (614)
|.. |..|+.|.+ ++ + ++.+.|.||+|.+... . ...+++||
T Consensus 105 r~~~~~~~~~~~~~~~~~G~~S~~L~~-l~-------~---------------Gd~v~v~gP~G~f~~~~~~~~~~~~vl 161 (307)
T PLN03116 105 RRAVYYDPETGKEDPAKKGVCSNFLCD-AK-------P---------------GDKVQITGPSGKVMLLPEEDPNATHIM 161 (307)
T ss_pred EEEEEecCCcCCCCCccCcchhhhHhh-CC-------C---------------CCEEEEEEecCCceeCCCCCCCCcEEE
Confidence 974 446666665 42 2 5899999999997642 1 34578999
Q ss_pred EEeCcCHHHHHHHHHHHHHhhcc----------------cch-hHHHHHhcccccCC-CE-EEEEecCCCCCCccccccc
Q 007179 531 VGLGIGATPMISIVKDIVNNMKA----------------IEE-EEENDLENGRDTGV-NT-TIIIIDNNYEPFFFWTQKK 591 (614)
Q Consensus 531 IagG~GItp~~s~l~~l~~~~~~----------------~~~-~~~~~l~~l~~~~~-~~-~v~~~~~~~~~~~~w~g~~ 591 (614)
|||||||||++||+++++..... ..+ .+.+||+++++.++ +. ..++++++.+. |.|.+
T Consensus 162 IAgGtGIaP~~sml~~~l~~~~~~~~~~~~v~L~~g~R~~~d~~~~deL~~l~~~~~~~~~~~~~~sr~~~~---~~g~~ 238 (307)
T PLN03116 162 VATGTGIAPFRGFLRRMFMEDVPAFKFGGLAWLFLGVANSDSLLYDDEFERYLKDYPDNFRYDYALSREQKN---KKGGK 238 (307)
T ss_pred EecCccHHHHHHHHHHHHhhccccccCCCcEEEEEecCCcccchHHHHHHHHHHhCCCcEEEEEEEccCCcc---cCCCc
Confidence 99999999999999998764321 111 35569998877766 43 44556666666 88889
Q ss_pred ccCChHHHHH
Q 007179 592 GPIQDKKSIL 601 (614)
Q Consensus 592 G~i~~~~~~~ 601 (614)
|+|++.+.+.
T Consensus 239 g~v~~~l~~~ 248 (307)
T PLN03116 239 MYVQDKIEEY 248 (307)
T ss_pred cchhhHHHHH
Confidence 9998765543
No 32
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.85 E-value=2.2e-20 Score=183.34 Aligned_cols=162 Identities=25% Similarity=0.377 Sum_probs=123.1
Q ss_pred eEEEEEEEEecCCEEEEEEeCCCCcccCCCCEEEEEeCCCC-CCccccceeccCCCCCcEEEEEEec---CccchHHHHH
Q 007179 405 AVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVS-PFEWHPFSITSAPDDDYLSVHIRTL---GDWTRQLRTV 480 (614)
Q Consensus 405 ~~~v~~~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~p~~~-~~~~hpfTias~p~~~~l~l~ir~~---g~~T~~L~~~ 480 (614)
.++|++++.+++++++++++.|+.+.|+||||+.|.++..+ ..+.|||||+|.|+++.++|+||.. |+.|+.|.+
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~~~l~~~vk~~~~~g~~s~~l~~- 80 (218)
T cd06196 2 TVTLLSIEPVTHDVKRLRFDKPEGYDFTPGQATEVAIDKPGWRDEKRPFTFTSLPEDDVLEFVIKSYPDHDGVTEQLGR- 80 (218)
T ss_pred ceEEEEEEEcCCCeEEEEEcCCCcCCCCCCCEEEEEeeCCCCCccccccccccCCCCCeEEEEEEEcCCCCcHhHHHHh-
Confidence 46789999999999999999988889999999999998654 3478999999999889999999986 567877753
Q ss_pred hhhcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhhcccc-----
Q 007179 481 FSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE----- 555 (614)
Q Consensus 481 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~~~~~----- 555 (614)
+ ++ ++++.+.||||.+.. .+++||||||+||||++|+++++....+..+
T Consensus 81 l-------~~---------------G~~v~i~gP~G~~~~----~~~~vlia~GtGiaP~~s~l~~~~~~~~~~~v~l~~ 134 (218)
T cd06196 81 L-------QP---------------GDTLLIEDPWGAIEY----KGPGVFIAGGAGITPFIAILRDLAAKGKLEGNTLIF 134 (218)
T ss_pred C-------CC---------------CCEEEEECCccceEe----cCceEEEecCCCcChHHHHHHHHHhCCCCceEEEEE
Confidence 2 12 488999999999753 2579999999999999999999987543221
Q ss_pred ------h-hHHHHHhcccccCCCEEEEEecCCCCCCcccccccccCChHHHH
Q 007179 556 ------E-EEENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSI 600 (614)
Q Consensus 556 ------~-~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~w~g~~G~i~~~~~~ 600 (614)
+ .+.++|+++. +.. .+++.+++.+. ....|+++++...
T Consensus 135 ~~r~~~~~~~~~el~~l~--~~~-~~~~~s~~~~~----~~~~g~~~~~~l~ 179 (218)
T cd06196 135 ANKTEKDIILKDELEKML--GLK-FINVVTDEKDP----GYAHGRIDKAFLK 179 (218)
T ss_pred ecCCHHHHhhHHHHHHhh--cce-EEEEEcCCCCC----CeeeeEECHHHHH
Confidence 1 2456887763 222 33444444332 2357999876554
No 33
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=99.85 E-value=3e-20 Score=187.10 Aligned_cols=164 Identities=21% Similarity=0.327 Sum_probs=126.3
Q ss_pred eeEEEEEEEEecCCEEEEEEeCCCCcccCCCCEEEEEeCCCCCCccccceeccCCCCCcEEEEEEecCccchHHHHHhhh
Q 007179 404 KAVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRTLGDWTRQLRTVFSE 483 (614)
Q Consensus 404 ~~~~v~~~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~p~~~~~~~hpfTias~p~~~~l~l~ir~~g~~T~~L~~~~~~ 483 (614)
.+++|++++.+++++..++++.| ..++||||+.|++|..+ .|||||++.+ ++.++|+||..|..|+.|.+ ++
T Consensus 8 ~~~~v~~i~~~t~~~~~~~l~~~--~~~~pGQfi~l~~~~~~---~~pySi~~~~-~~~~~~~Ik~~G~~S~~L~~-l~- 79 (263)
T PRK08221 8 AAYKILDITKHTDIEYTFRVEVD--GPVKPGQFFEVSLPKVG---EAPISVSDYG-DGYIDLTIRRVGKVTDEIFN-LK- 79 (263)
T ss_pred ccEEEEEEeccCCcEEEEEecCC--CCCCCCceEEEEeCCCC---cceeeccCCC-CCEEEEEEEeCCchhhHHHh-CC-
Confidence 35789999999999999999875 57999999999998654 3999999875 67899999999999988864 31
Q ss_pred cCCCCCCCCCccccccCCCCCCCCEEEEeCccCC-CCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhhccc-c------
Q 007179 484 VCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGA-PAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAI-E------ 555 (614)
Q Consensus 484 ~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~-~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~~~~-~------ 555 (614)
+ ++.+.|+||+|. +..+....+++||||||+||||++|+++++.+..... +
T Consensus 80 ------~---------------Gd~v~v~gP~G~~f~~~~~~~~~~llIAgGtGItP~~sil~~~~~~~~~~~~v~L~~g 138 (263)
T PRK08221 80 ------E---------------GDKLFLRGPYGNGFPVDTYKGKELIVVAGGTGVAPVKGLMRYFYENPQEIKSLDLILG 138 (263)
T ss_pred ------C---------------CCEEEEECCCCCCcccCccCCccEEEEcccccHHHHHHHHHHHHhCcccCceEEEEEe
Confidence 2 489999999998 4443334579999999999999999999998653221 1
Q ss_pred -----h-hHHHHHhcccccCCCEEEEEecCCCCCCcccccccccCChHHHHH
Q 007179 556 -----E-EEENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSIL 601 (614)
Q Consensus 556 -----~-~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~w~g~~G~i~~~~~~~ 601 (614)
+ .+.++|+++.+. .+.. ++++++.+. |.+..|++++...+.
T Consensus 139 ~r~~~~l~~~~el~~~~~~-~~~~-~~~~~~~~~---~~~~~G~v~~~l~~~ 185 (263)
T PRK08221 139 FKNPDDILFKEDLKRWREK-INLI-LTLDEGEEG---YRGNVGLVTKYIPEL 185 (263)
T ss_pred cCCHHHhhHHHHHHHHhhc-CcEE-EEecCCCCC---CccCccccChhhHhc
Confidence 1 245688887653 3433 334555555 889999999776553
No 34
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.85 E-value=2.8e-20 Score=196.03 Aligned_cols=169 Identities=16% Similarity=0.236 Sum_probs=129.7
Q ss_pred eeEEEEEEEEecCCEEEEEEeCCC----CcccCCCCEEEEEeCCCCCCccccceeccCCCCCcEEEEEEecC--ccchHH
Q 007179 404 KAVSIQKVAVYPGNVLALHMSKPD----RFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRTLG--DWTRQL 477 (614)
Q Consensus 404 ~~~~v~~~~~~~~~v~~l~l~~~~----~~~~~pGQ~v~l~~p~~~~~~~hpfTias~p~~~~l~l~ir~~g--~~T~~L 477 (614)
+.++|.+++.+++++++++|+.|. .+.|+||||+.|.++..+....|||||+|.|+++.++|+||..+ ..|..|
T Consensus 2 ~~~~V~~i~~~t~~~~~l~l~~~~~~~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~p~~~~l~i~vk~~~~G~~S~~l 81 (352)
T TIGR02160 2 HRLTVAEVERLTADAVAISFEIPDELAEDYRFAPGQHLTLRREVDGEELRRSYSICSAPAPGEIRVAVKKIPGGLFSTWA 81 (352)
T ss_pred eEeEEEEEEecCCCeEEEEEeCCccccccCCCCCCCeEEEEEecCCcEeeeeccccCCCCCCcEEEEEEEeCCCcchHHH
Confidence 577899999999999999999764 25899999999999755545679999999998889999999974 467777
Q ss_pred HHHhhhcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCCCCCCC--CCCeEEEEEeCcCHHHHHHHHHHHHHhhcccc
Q 007179 478 RTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYK--EYEVVLLVGLGIGATPMISIVKDIVNNMKAIE 555 (614)
Q Consensus 478 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~--~~~~vvlIagG~GItp~~s~l~~l~~~~~~~~ 555 (614)
.+.++ + |+.+.|.||+|.+..+.. ..+++||||||+||||++||+++++......+
T Consensus 82 ~~~l~-------~---------------Gd~v~v~gP~G~f~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~~~~~~ 139 (352)
T TIGR02160 82 NDEIR-------P---------------GDTLEVMAPQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAAEPRST 139 (352)
T ss_pred HhcCC-------C---------------CCEEEEeCCceeeecCCCccccccEEEEeccccHhHHHHHHHHHHhcCCCce
Confidence 65442 2 589999999999764332 34789999999999999999999987543222
Q ss_pred -----------h-hHHHHHhcccccCCC-EEE-EEecCCCCCCcccccccccCChH
Q 007179 556 -----------E-EEENDLENGRDTGVN-TTI-IIIDNNYEPFFFWTQKKGPIQDK 597 (614)
Q Consensus 556 -----------~-~~~~~l~~l~~~~~~-~~v-~~~~~~~~~~~~w~g~~G~i~~~ 597 (614)
+ .+.+||+++++.+++ ..+ ++.+++.+. |.+..|+++..
T Consensus 140 v~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~---~~~~~gr~~~~ 192 (352)
T TIGR02160 140 FTLVYGNRRTASVMFAEELADLKDKHPQRFHLAHVLSREPRE---APLLSGRLDGE 192 (352)
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhCcCcEEEEEEecCCCcC---cccccCccCHH
Confidence 1 355689888766654 333 455555555 66778888754
No 35
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=99.85 E-value=2.8e-20 Score=189.97 Aligned_cols=151 Identities=23% Similarity=0.313 Sum_probs=112.7
Q ss_pred ceeEEEEEEEEecCCEEEEEEe--CCC---CcccCCCCEEEEEeCCCCCCccccceeccCCC-CCcEEEEEEecCccchH
Q 007179 403 IKAVSIQKVAVYPGNVLALHMS--KPD---RFRYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRTLGDWTRQ 476 (614)
Q Consensus 403 ~~~~~v~~~~~~~~~v~~l~l~--~~~---~~~~~pGQ~v~l~~p~~~~~~~hpfTias~p~-~~~l~l~ir~~g~~T~~ 476 (614)
++.++|++++.+++|+..++++ .|. .+.|+||||+.|++|+.+ .|||||+|.|. ++.++|+||..|.+|+.
T Consensus 5 ~~~~~V~~~~~~t~d~~~~~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~---~~pySias~p~~~~~l~l~Ik~~G~~S~~ 81 (289)
T PRK08345 5 LHDAKILEVYDLTEREKLFLLRFEDPELAESFTFKPGQFVQVTIPGVG---EVPISICSSPTRKGFFELCIRRAGRVTTV 81 (289)
T ss_pred ceeEEEEEEEecCCCCCEEEEEEeCccccCCCCcCCCCEEEEEcCCCC---ceeeEecCCCCCCCEEEEEEEeCChHHHH
Confidence 4678999999999986555554 442 477999999999998653 48999999985 47899999999999988
Q ss_pred HHHHhhhcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCCC-CCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhhc-cc
Q 007179 477 LRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPA-QDYKEYEVVLLVGLGIGATPMISIVKDIVNNMK-AI 554 (614)
Q Consensus 477 L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~-~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~~-~~ 554 (614)
|.+ ++ + ++++.|+||||.+. .+....++++|||||+||||++||++++++... ..
T Consensus 82 L~~-l~-------~---------------Gd~v~v~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~s~l~~~l~~~~~~~ 138 (289)
T PRK08345 82 IHR-LK-------E---------------GDIVGVRGPYGNGFPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMDNRWKYG 138 (289)
T ss_pred HHh-CC-------C---------------CCEEEEeCCCCCCCCcccccCceEEEEecccchhHHHHHHHHHHhcCCCCC
Confidence 853 31 2 48899999999843 322334689999999999999999999887541 11
Q ss_pred c-----------h-hHHHHHhcccccCCCEE-EEEecC
Q 007179 555 E-----------E-EEENDLENGRDTGVNTT-IIIIDN 579 (614)
Q Consensus 555 ~-----------~-~~~~~l~~l~~~~~~~~-v~~~~~ 579 (614)
+ + .+.+||+++++...+.. .+++++
T Consensus 139 ~v~l~~~~r~~~d~~~~deL~~l~~~~~~~~~~~~~s~ 176 (289)
T PRK08345 139 NITLIYGAKYYEDLLFYDELIKDLAEAENVKIIQSVTR 176 (289)
T ss_pred cEEEEEecCCHHHhhHHHHHHHHHhcCCCEEEEEEecC
Confidence 1 1 24568988866666633 334444
No 36
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=99.84 E-value=5.4e-20 Score=189.32 Aligned_cols=174 Identities=12% Similarity=0.093 Sum_probs=133.4
Q ss_pred ccceeEEEEEEEEecCCEEEEEEeCCC--CcccCCCCEEEEEeCCC---CCCccccceeccCCC-CCcEEEEEEec--Cc
Q 007179 401 SSIKAVSIQKVAVYPGNVLALHMSKPD--RFRYKSGQYMFVNCAAV---SPFEWHPFSITSAPD-DDYLSVHIRTL--GD 472 (614)
Q Consensus 401 ~~~~~~~v~~~~~~~~~v~~l~l~~~~--~~~~~pGQ~v~l~~p~~---~~~~~hpfTias~p~-~~~l~l~ir~~--g~ 472 (614)
..+.+++|.+++.+++|+.+++|+.|. .+.++||||+.+.++.. .....||||++|.|+ ++.++|+||+. |.
T Consensus 50 ~~~~~~~V~~i~~~t~dv~~f~f~lp~~~~~~f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~~~~~le~~IK~~~~G~ 129 (325)
T PTZ00274 50 QRYEPYQLGEVIPITHDTALFRFLLHSEEEFNLKPCSTLQACYKYGVQPMDQCQRFYTPVTANHTKGYFDIIVKRKKDGL 129 (325)
T ss_pred CceEEEEEEEEEEeCCCeEEEEEeCCcccccCCCCccEEEEEEecCCCCCCEEEEeeecCCCCCCCCeEEEEEEEcCCCc
Confidence 457889999999999999999998764 68899999999887632 223579999999996 57899999996 45
Q ss_pred cchHHHHHhhhcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhhc
Q 007179 473 WTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMK 552 (614)
Q Consensus 473 ~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~~ 552 (614)
+|..|.+ ++ + |+.+.+.||+|.+..+....+++|||||||||||++||+++++++..
T Consensus 130 ~S~~L~~-lk-------~---------------Gd~v~v~GP~f~~~~~~~~~~~lvlIAGGsGITP~lsmlr~~l~~~~ 186 (325)
T PTZ00274 130 MTNHLFG-MH-------V---------------GDKLLFRSVTFKIQYRPNRWKHVGMIAGGTGFTPMLQIIRHSLTEPW 186 (325)
T ss_pred ccHHHhc-CC-------C---------------CCEEEEeCCeeecccCCCCCceEEEEeCCcchhHHHHHHHHHHhccc
Confidence 6888874 42 3 58999999988765444455799999999999999999999987531
Q ss_pred ------c-----------cch-hHHHHHhcccccCCC-E-EEEEecCC--CCCCcccccccccCChHHHH
Q 007179 553 ------A-----------IEE-EEENDLENGRDTGVN-T-TIIIIDNN--YEPFFFWTQKKGPIQDKKSI 600 (614)
Q Consensus 553 ------~-----------~~~-~~~~~l~~l~~~~~~-~-~v~~~~~~--~~~~~~w~g~~G~i~~~~~~ 600 (614)
+ ..+ .+.++|+++++.+++ . .+++++++ .+. |.|..|+|+++...
T Consensus 187 ~~~~~~~~~v~Llyg~R~~~di~~~~eL~~La~~~~~~f~v~~~ls~~~~~~~---w~g~~G~V~~~ll~ 253 (325)
T PTZ00274 187 DSGEVDRTKLSFLFCNRTERHILLKGLFDDLARRYSNRFKVYYTIDQAVEPDK---WNHFLGYVTKEMVR 253 (325)
T ss_pred ccccCCCCeEEEEEEcCCHHHhhHHHHHHHHHHhCCCcEEEEEEeCCCCcccC---CCCCCCccCHHHHH
Confidence 1 111 245688998776664 3 44555543 234 89999999998643
No 37
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.84 E-value=3e-20 Score=182.18 Aligned_cols=140 Identities=27% Similarity=0.432 Sum_probs=110.7
Q ss_pred CCEEEEEEeCCCC-cccCCCCEEEEEeCCCCCCccccceeccCCCC-CcEEEEEEecCccchHHHHHhhhcCCCCCCCCC
Q 007179 416 GNVLALHMSKPDR-FRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRTLGDWTRQLRTVFSEVCRPPPNGIS 493 (614)
Q Consensus 416 ~~v~~l~l~~~~~-~~~~pGQ~v~l~~p~~~~~~~hpfTias~p~~-~~l~l~ir~~g~~T~~L~~~~~~~~~~~~~g~~ 493 (614)
.++++++++.+++ +.++||||+.|+++..+..++|||||+|.|++ +.++|+||..|++|+.|.+.++ +
T Consensus 7 ~~~~~i~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~~l~l~vk~~G~~t~~l~~~l~-------~--- 76 (216)
T cd06198 7 RPTTTLTLEPRGPALGHRAGQFAFLRFDASGWEEPHPFTISSAPDPDGRLRFTIKALGDYTRRLAERLK-------P--- 76 (216)
T ss_pred cceEEEEEeeCCCCCCcCCCCEEEEEeCCCCCCCCCCcEEecCCCCCCeEEEEEEeCChHHHHHHHhCC-------C---
Confidence 4688888887665 78999999999999766678999999999865 5999999999999999985442 2
Q ss_pred ccccccCCCCCCCCEEEEeCccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhhcccc-----------h-hHHHH
Q 007179 494 GLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE-----------E-EEEND 561 (614)
Q Consensus 494 ~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~~~~~-----------~-~~~~~ 561 (614)
++++.|+||||.+..+.. +++++|||||+||||++|+++++.+.....+ + .+.++
T Consensus 77 ------------G~~v~i~gP~G~~~~~~~-~~~~vlia~GtGiap~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~~ 143 (216)
T cd06198 77 ------------GTRVTVEGPYGRFTFDDR-RARQIWIAGGIGITPFLALLEALAARGDARPVTLFYCVRDPEDAVFLDE 143 (216)
T ss_pred ------------CCEEEEECCCCCCccccc-CceEEEEccccCHHHHHHHHHHHHhcCCCceEEEEEEECCHHHhhhHHH
Confidence 488999999999865433 7899999999999999999999987642211 1 34568
Q ss_pred HhcccccCCCEEEEEecC
Q 007179 562 LENGRDTGVNTTIIIIDN 579 (614)
Q Consensus 562 l~~l~~~~~~~~v~~~~~ 579 (614)
|+++.+.+ +..++++..
T Consensus 144 l~~l~~~~-~~~~~~~~~ 160 (216)
T cd06198 144 LRALAAAA-GVVLHVIDS 160 (216)
T ss_pred HHHHHHhc-CeEEEEEeC
Confidence 88886655 544444443
No 38
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=99.84 E-value=5.7e-20 Score=184.11 Aligned_cols=165 Identities=22% Similarity=0.299 Sum_probs=127.0
Q ss_pred ceeEEEEEEEEecCCEEEEEEeCCCCcccCCCCEEEEEeCCCCCCccccceeccCCCCCcEEEEEEecCccchHHHHHhh
Q 007179 403 IKAVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRTLGDWTRQLRTVFS 482 (614)
Q Consensus 403 ~~~~~v~~~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~p~~~~~~~hpfTias~p~~~~l~l~ir~~g~~T~~L~~~~~ 482 (614)
++.++|++++.+++++.+++++.|..+.|+||||+.|.+|..+...+|||||+|.| ++.++|+||..|.+|+.|.+ ++
T Consensus 4 ~~~~~V~~~~~~t~d~~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~-~~~l~l~Vk~~G~~t~~l~~-l~ 81 (250)
T PRK00054 4 PENMKIVENKEIAPNIYTLVLDGEKVFDMKPGQFVMVWVPGVEPLLERPISISDID-KNEITILYRKVGEGTKKLSK-LK 81 (250)
T ss_pred ceEEEEEEEEEecCCeEEEEEeCccccCCCCCcEEEEEeCCCCCcCceeeEEeeeC-CCEEEEEEEEcChHHHHHhc-CC
Confidence 46788999999999999999997767889999999999998766679999999999 88999999999999987753 21
Q ss_pred hcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhhccc--------
Q 007179 483 EVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAI-------- 554 (614)
Q Consensus 483 ~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~~~~-------- 554 (614)
+ ++++.|.||||.........+++|+||||+||||++|+++++.+..++.
T Consensus 82 -------~---------------G~~v~i~gP~G~~f~l~~~~~~~vlIagG~GiaP~~s~l~~~~~~~~~v~l~~~~r~ 139 (250)
T PRK00054 82 -------E---------------GDELDIRGPLGNGFDLEEIGGKVLLVGGGIGVAPLYELAKELKKKGVEVTTVLGART 139 (250)
T ss_pred -------C---------------CCEEEEEcccCCCCCCCCCCCeEEEEeccccHHHHHHHHHHHHHcCCcEEEEEEcCC
Confidence 2 4899999999984322236689999999999999999999998653321
Q ss_pred -chh-HHHHHhcccccCCCEEEEEecCCCCCCcccccccccCChHHHHHh
Q 007179 555 -EEE-EENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSILL 602 (614)
Q Consensus 555 -~~~-~~~~l~~l~~~~~~~~v~~~~~~~~~~~~w~g~~G~i~~~~~~~~ 602 (614)
.+. +.++|++++ +. ++.. .+. |.+.+|++++.+.+..
T Consensus 140 ~~d~~~~~el~~~~----~~--~~~~--~~~---~~~~~g~v~~~l~~~~ 178 (250)
T PRK00054 140 KDEVIFEEEFAKVG----DV--YVTT--DDG---SYGFKGFVTDVLDELD 178 (250)
T ss_pred HHHhhhHHHHHhcC----CE--EEEe--cCC---CCCcccchhHhHhhhc
Confidence 122 345676642 11 2222 233 6788999998766543
No 39
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=99.84 E-value=4.8e-20 Score=183.03 Aligned_cols=169 Identities=16% Similarity=0.242 Sum_probs=129.0
Q ss_pred EEEEEEEecCCEEEEEEeCCC---CcccCCCCEEEEEeCCCCCCccccceeccCCC-CCcEEEEEEec--CccchHHHHH
Q 007179 407 SIQKVAVYPGNVLALHMSKPD---RFRYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRTL--GDWTRQLRTV 480 (614)
Q Consensus 407 ~v~~~~~~~~~v~~l~l~~~~---~~~~~pGQ~v~l~~p~~~~~~~hpfTias~p~-~~~l~l~ir~~--g~~T~~L~~~ 480 (614)
+|.+++.+++++..++|+.++ .+.++||||+.|.+|..+....||||++|.|. ++.++|+||.. |..|+.|.+
T Consensus 2 ~v~~~~~~~~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~~~~~~R~ysi~s~~~~~~~~~~~v~~~~~G~~s~~l~~- 80 (234)
T cd06183 2 KLVSKEDISHDTRIFRFELPSPDQVLGLPVGQHVELKAPDDGEQVVRPYTPISPDDDKGYFDLLIKIYPGGKMSQYLHS- 80 (234)
T ss_pred EeEEeEecCCCEEEEEEECCCCCCcCCCCcccEEEEEecCCCcccccccccccCCCcCCEEEEEEEECCCCcchhHHhc-
Confidence 578889999999999999875 37899999999999986666889999999886 45799999997 667877753
Q ss_pred hhhcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCCCCCCCCC-CeEEEEEeCcCHHHHHHHHHHHHHhhc-cc----
Q 007179 481 FSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEY-EVVLLVGLGIGATPMISIVKDIVNNMK-AI---- 554 (614)
Q Consensus 481 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~-~~vvlIagG~GItp~~s~l~~l~~~~~-~~---- 554 (614)
++ + ++++.|+||||.+....... +++||||||+||||++|++++++.... ..
T Consensus 81 ~~-------~---------------G~~v~i~gP~G~~~~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~~~~~i~l 138 (234)
T cd06183 81 LK-------P---------------GDTVEIRGPFGKFEYKPNGKVKHIGMIAGGTGITPMLQLIRAILKDPEDKTKISL 138 (234)
T ss_pred CC-------C---------------CCEEEEECCccceeecCCCCccEEEEEcCCcchhHHHHHHHHHHhCcCcCcEEEE
Confidence 21 2 48899999999976543333 799999999999999999999987521 11
Q ss_pred -------ch-hHHHHHhcccccC-CCE-EEEEecCCCCCCcccccccccCChHHHHH
Q 007179 555 -------EE-EEENDLENGRDTG-VNT-TIIIIDNNYEPFFFWTQKKGPIQDKKSIL 601 (614)
Q Consensus 555 -------~~-~~~~~l~~l~~~~-~~~-~v~~~~~~~~~~~~w~g~~G~i~~~~~~~ 601 (614)
++ .+.++|+++.+.. .+. ..++++++.+. |.+..|+++++....
T Consensus 139 ~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~l~~ 192 (234)
T cd06183 139 LYANRTEEDILLREELDELAKKHPDRFKVHYVLSRPPEG---WKGGVGFITKEMIKE 192 (234)
T ss_pred EEecCCHHHhhhHHHHHHHHHhCcccEEEEEEEcCCCcC---CccccceECHHHHHH
Confidence 11 3456888886553 233 33445555555 889999999876543
No 40
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=99.84 E-value=2.6e-20 Score=183.48 Aligned_cols=150 Identities=22% Similarity=0.242 Sum_probs=117.0
Q ss_pred EEEEEEecCCEEEEEEeCCCCcccCCCCEEEEEeCCCCCCccccceeccCCCC-CcEEEEEEec--CccchHHHHHhhhc
Q 007179 408 IQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRTL--GDWTRQLRTVFSEV 484 (614)
Q Consensus 408 v~~~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~p~~~~~~~hpfTias~p~~-~~l~l~ir~~--g~~T~~L~~~~~~~ 484 (614)
|.+++.+++++++++++.++.+.|+||||+.|+++.. ..|||||+|.|.+ +.++|+||.. |.+|..|.+.++
T Consensus 1 V~~~~~~~~~~~~i~l~~~~~~~~~pGQ~v~l~~~~~---~~r~ySi~s~~~~~~~~~~~i~~~~~G~~s~~l~~~~~-- 75 (222)
T cd06194 1 VVSLQRLSPDVLRVRLEPDRPLPYLPGQYVNLRRAGG---LARSYSPTSLPDGDNELEFHIRRKPNGAFSGWLGEEAR-- 75 (222)
T ss_pred CceeeecCCCEEEEEEecCCCCCcCCCCEEEEEcCCC---CceeeecCCCCCCCCEEEEEEEeccCCccchHHHhccC--
Confidence 3567889999999999988888999999999999864 5699999999876 7899999987 567888876442
Q ss_pred CCCCCCCCCccccccCCCCCCCCEEEEeCccCCCCCCC-CCCCeEEEEEeCcCHHHHHHHHHHHHHhhcccch-------
Q 007179 485 CRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDY-KEYEVVLLVGLGIGATPMISIVKDIVNNMKAIEE------- 556 (614)
Q Consensus 485 ~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~-~~~~~vvlIagG~GItp~~s~l~~l~~~~~~~~~------- 556 (614)
+ ++.+.|.||+|.+.... ...+++++||||+||||++|++++++......+.
T Consensus 76 -----~---------------G~~v~i~gP~G~~~~~~~~~~~~~v~iagG~Giap~~~~l~~~~~~~~~~~v~l~~~~r 135 (222)
T cd06194 76 -----P---------------GHALRLQGPFGQAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQGHQGEIRLVHGAR 135 (222)
T ss_pred -----C---------------CCEEEEecCcCCeeccCCCCCCCEEEEecCcchhhHHHHHHHHHhcCCCccEEEEEecC
Confidence 2 48899999999986533 4567999999999999999999999865433221
Q ss_pred -----hHHHHHhcccccCCCEE-EEEecCCCC
Q 007179 557 -----EEENDLENGRDTGVNTT-IIIIDNNYE 582 (614)
Q Consensus 557 -----~~~~~l~~l~~~~~~~~-v~~~~~~~~ 582 (614)
.+.+||+++++.+.+.. ..+++++.+
T Consensus 136 ~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~ 167 (222)
T cd06194 136 DPDDLYLHPALLWLAREHPNFRYIPCVSEGSQ 167 (222)
T ss_pred ChhhccCHHHHHHHHHHCCCeEEEEEEccCCC
Confidence 24568888876666643 344554433
No 41
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.84 E-value=4e-20 Score=181.34 Aligned_cols=168 Identities=17% Similarity=0.181 Sum_probs=121.2
Q ss_pred EEEEecCCEEEEEEeCCCC---cccCCCCEEEEEeCCC----------------CCCccccceeccCCCC----CcEEEE
Q 007179 410 KVAVYPGNVLALHMSKPDR---FRYKSGQYMFVNCAAV----------------SPFEWHPFSITSAPDD----DYLSVH 466 (614)
Q Consensus 410 ~~~~~~~~v~~l~l~~~~~---~~~~pGQ~v~l~~p~~----------------~~~~~hpfTias~p~~----~~l~l~ 466 (614)
+.+.+++|+.++++..+.+ +.|+|||||.|.+|.. +...+|||||+|.|++ +.++|+
T Consensus 2 ~~~~~s~~v~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~~~~~l~l~ 81 (220)
T cd06197 2 KSEVITPTLTRFTFELSPPDVVGKWTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFEIT 81 (220)
T ss_pred cceecccceeEEEEEecCCccccccCCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCCCCCEEEEE
Confidence 3567899999999998876 8999999999999853 1124688999999964 689999
Q ss_pred EEecCccchHHHHHhhhcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCCCCCC---CCCCeEEEEEeCcCHHHHHHH
Q 007179 467 IRTLGDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDY---KEYEVVLLVGLGIGATPMISI 543 (614)
Q Consensus 467 ir~~g~~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~---~~~~~vvlIagG~GItp~~s~ 543 (614)
||+.|++|+.|++...... ..++.+.++||+|.+..+. ..++++||||||+||||++|+
T Consensus 82 vk~~G~~T~~L~~~~~~~~------------------~~G~~v~v~gP~G~f~~~~~~~~~~~~illIagG~GItP~~si 143 (220)
T cd06197 82 VRKKGPVTGFLFQVARRLR------------------EQGLEVPVLGVGGEFTLSLPGEGAERKMVWIAGGVGITPFLAM 143 (220)
T ss_pred EEeCCCCCHHHHHhhhccc------------------CCCceEEEEecCCcccCCcccccCCceEEEEecccchhhHHHH
Confidence 9999999999988763210 1148899999999986543 346899999999999999999
Q ss_pred HHHHHHhhc-cc-----------ch-hHHHHHhcccccCCCEEEEEecCCCCCCcccccccccCChHHHH
Q 007179 544 VKDIVNNMK-AI-----------EE-EEENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSI 600 (614)
Q Consensus 544 l~~l~~~~~-~~-----------~~-~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~w~g~~G~i~~~~~~ 600 (614)
++++++... .. .+ .+.+||+++.........+.+. ..+-||..|+++.....
T Consensus 144 l~~l~~~~~~~~~v~l~~~~r~~~~~~~~~el~~~~~~~~~~~~~~~~-----~v~~CGP~~m~~~~~~~ 208 (220)
T cd06197 144 LRAILSSRNTTWDITLLWSLREDDLPLVMDTLVRFPGLPVSTTLFITS-----EVYLCGPPALEKAVLEW 208 (220)
T ss_pred HHHHHhcccCCCcEEEEEEecchhhHHHHHHHHhccCCceEEEEEEec-----cEEEECcHHHHHHHHHH
Confidence 999986431 11 11 3556887764311112222221 24467888877755444
No 42
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=99.83 E-value=9.1e-20 Score=186.14 Aligned_cols=171 Identities=17% Similarity=0.188 Sum_probs=129.3
Q ss_pred eeEEEEEEEEec-----CCEEEEEEeCCCCcccCCCCEEEEEeCCCC-----CCccccceeccCCCC-----CcEEEEEE
Q 007179 404 KAVSIQKVAVYP-----GNVLALHMSKPDRFRYKSGQYMFVNCAAVS-----PFEWHPFSITSAPDD-----DYLSVHIR 468 (614)
Q Consensus 404 ~~~~v~~~~~~~-----~~v~~l~l~~~~~~~~~pGQ~v~l~~p~~~-----~~~~hpfTias~p~~-----~~l~l~ir 468 (614)
..++|++++.++ +++.+++++.+..+.|+|||||.|.+++.. ....|||||+|.|.+ +.++|+||
T Consensus 9 ~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~g~~~~~R~YSIas~p~~~~~~~~~l~l~Vk 88 (286)
T cd06208 9 LIGKVVSNTRLTGPDAPGEVCHIVIDHGGKLPYLEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGDGKTLSLCVK 88 (286)
T ss_pred eEEEEEeceeccCCCCCcceEEEEEeCCCcccccCCceEEEECCCcchhcCCCCCceeeEecCCccccCCCCCEEEEEEE
Confidence 457899999998 699999999877889999999999877422 234799999998843 58999999
Q ss_pred ec------------CccchHHHHHhhhcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCCCCCC-CCCCeEEEEEeCc
Q 007179 469 TL------------GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDY-KEYEVVLLVGLGI 535 (614)
Q Consensus 469 ~~------------g~~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~-~~~~~vvlIagG~ 535 (614)
.. |..|+.|.+ ++ + |++|.|.||+|.+.... ...+++||||||+
T Consensus 89 ~~~~~~~~~~~~~~G~~S~~L~~-l~-------~---------------Gd~v~v~gP~G~~~~~~~~~~~~~vlIagGt 145 (286)
T cd06208 89 RLVYTDPETDETKKGVCSNYLCD-LK-------P---------------GDDVQITGPVGKTMLLPEDPNATLIMIATGT 145 (286)
T ss_pred EEEEecCCCCceeccchHHHHhh-CC-------C---------------CCEEEEEeecCCcccCCCCCCCCEEEEecCc
Confidence 87 556777765 31 2 58999999999976432 2346899999999
Q ss_pred CHHHHHHHHHHHHHhh-----ccc-----------ch-hHHHHHhcccccCC-CE-EEEEecCCCCCCcccccccccCCh
Q 007179 536 GATPMISIVKDIVNNM-----KAI-----------EE-EEENDLENGRDTGV-NT-TIIIIDNNYEPFFFWTQKKGPIQD 596 (614)
Q Consensus 536 GItp~~s~l~~l~~~~-----~~~-----------~~-~~~~~l~~l~~~~~-~~-~v~~~~~~~~~~~~w~g~~G~i~~ 596 (614)
||||++|++++++... ... .+ .+.++|+++.+.++ +. ...+++++.+. |.|.+|+|++
T Consensus 146 GIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~sr~~~~---~~g~~g~v~~ 222 (286)
T cd06208 146 GIAPFRSFLRRLFREKHADYKFTGLAWLFFGVPNSDSLLYDDELEKYPKQYPDNFRIDYAFSREQKN---ADGGKMYVQD 222 (286)
T ss_pred cHHHHHHHHHHHHHhhhcccCCCCCEEEEEEecCccchhHHHHHHHHHHhCCCcEEEEEEEcCCCCC---CCCCceehhh
Confidence 9999999999998652 111 11 24568998877665 33 34556666666 8899999988
Q ss_pred HHHH
Q 007179 597 KKSI 600 (614)
Q Consensus 597 ~~~~ 600 (614)
.+.+
T Consensus 223 ~i~~ 226 (286)
T cd06208 223 RIAE 226 (286)
T ss_pred HHHH
Confidence 6654
No 43
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=99.83 E-value=9.4e-20 Score=182.26 Aligned_cols=162 Identities=23% Similarity=0.372 Sum_probs=123.0
Q ss_pred EEEEEEEecCCEEEEEEeCCCC-cccCCCCEEEEEeCCCCCCccccceeccCC-CCCcEEEEEEecCccchHHHHHhhhc
Q 007179 407 SIQKVAVYPGNVLALHMSKPDR-FRYKSGQYMFVNCAAVSPFEWHPFSITSAP-DDDYLSVHIRTLGDWTRQLRTVFSEV 484 (614)
Q Consensus 407 ~v~~~~~~~~~v~~l~l~~~~~-~~~~pGQ~v~l~~p~~~~~~~hpfTias~p-~~~~l~l~ir~~g~~T~~L~~~~~~~ 484 (614)
+|++++.++++++.++++.|+. ..|+||||+.|+++..+ ++|||||+|+| +++.++|+||..|..|..|.+ ++
T Consensus 2 ~v~~~~~~t~d~~~~~l~~~~~~~~~~pGQf~~l~~~~~~--~~~pySi~s~~~~~~~~~~~vk~~G~~t~~l~~-l~-- 76 (248)
T cd06219 2 KILEKEELAPNVKLFEIEAPLIAKKAKPGQFVIVRADEKG--ERIPLTIADWDPEKGTITIVVQVVGKSTRELAT-LE-- 76 (248)
T ss_pred EEEEEEEeCCCeEEEEEEChhhhccCCCCcEEEEEcCCCC--CccceEeEEEcCCCCEEEEEEEeCCchHHHHHh-cC--
Confidence 6788899999999999998763 57999999999987543 67999999986 567899999999998877743 31
Q ss_pred CCCCCCCCCccccccCCCCCCCCEE-EEeCccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhhcc---------c
Q 007179 485 CRPPPNGISGLLRAEGHNNPDFPRV-LIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKA---------I 554 (614)
Q Consensus 485 ~~~~~~g~~~~~~~~~~~~~~~~~v-~i~GPyG~~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~~~---------~ 554 (614)
+ ++++ .++||||.+.. ..+.+++||||||+||||++|+++++.+..++ .
T Consensus 77 -----~---------------G~~v~~i~gP~G~~~~-~~~~~~~lliagG~GiaP~~~~l~~~~~~~~~v~l~~~~r~~ 135 (248)
T cd06219 77 -----E---------------GDKIHDVVGPLGKPSE-IENYGTVVFVGGGVGIAPIYPIAKALKEAGNRVITIIGARTK 135 (248)
T ss_pred -----C---------------CCEeeeeecCCCCCee-cCCCCeEEEEeCcccHHHHHHHHHHHHHcCCeEEEEEEcCCH
Confidence 2 4788 69999999864 34467999999999999999999998865422 1
Q ss_pred ch-hHHHHHhcccccCCCEEEEEecCCCCCCcccccccccCChHHHHHhhc
Q 007179 555 EE-EEENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSILLLG 604 (614)
Q Consensus 555 ~~-~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~w~g~~G~i~~~~~~~~~~ 604 (614)
.+ .+.+||+++.++ +++.++ +. |.+..|++++...+.+..
T Consensus 136 ~~~~~~~el~~l~~~-----~~~~~~--~~---~~~~~g~v~~~l~~~~~~ 176 (248)
T cd06219 136 DLVILEDEFRAVSDE-----LIITTD--DG---SYGEKGFVTDPLKELIES 176 (248)
T ss_pred HHhhhHHHHHhhcCe-----EEEEeC--CC---CCCccccchHHHHHHHhc
Confidence 12 245688877432 122222 23 778899999877766643
No 44
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.83 E-value=9.2e-20 Score=182.05 Aligned_cols=164 Identities=20% Similarity=0.297 Sum_probs=123.8
Q ss_pred EEEEEEecCCEEEEEEeCCC-CcccCCCCEEEEEeCC-CCCCccccceeccCC-CCCcEEEEEEecCccchHHHHHhhhc
Q 007179 408 IQKVAVYPGNVLALHMSKPD-RFRYKSGQYMFVNCAA-VSPFEWHPFSITSAP-DDDYLSVHIRTLGDWTRQLRTVFSEV 484 (614)
Q Consensus 408 v~~~~~~~~~v~~l~l~~~~-~~~~~pGQ~v~l~~p~-~~~~~~hpfTias~p-~~~~l~l~ir~~g~~T~~L~~~~~~~ 484 (614)
|.+++.+++++.+++++.|+ ...|+||||+.|++|. .+....|||||+|.| +++.++|+||..|.+|+.|.+ +
T Consensus 1 V~~~~~~t~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~~~~l~l~v~~~G~~s~~l~~-l--- 76 (246)
T cd06218 1 VLSNREIADDIYRLVLEAPEIAAAAKPGQFVMLRVPDGSDPLLRRPISIHDVDPEEGTITLLYKVVGKGTRLLSE-L--- 76 (246)
T ss_pred CcceeEecCCeEEEEEeCcchhccCCCCcEEEEEeCCCCCCcCCCceEeeeccCCCCEEEEEEEEECcchHHHhc-C---
Confidence 35678899999999999887 6789999999999987 345678999999988 478999999999999887743 2
Q ss_pred CCCCCCCCCccccccCCCCCCCCEEEEeCccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhhcc---------cc
Q 007179 485 CRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKA---------IE 555 (614)
Q Consensus 485 ~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~~~---------~~ 555 (614)
++ ++++.|+||||.+.......+++||||||+||||++|+++++....++ ..
T Consensus 77 ----~~---------------Gd~v~i~gP~G~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~v~l~~~~r~~~ 137 (246)
T cd06218 77 ----KA---------------GDELDVLGPLGNGFDLPDDDGKVLLVGGGIGIAPLLFLAKQLAERGIKVTVLLGFRSAD 137 (246)
T ss_pred ----CC---------------CCEEEEEecCCCCcCCCCCCCcEEEEecccCHHHHHHHHHHHHhcCCceEEEEEccchh
Confidence 12 489999999997432233578999999999999999999999873221 11
Q ss_pred h-hHHHHHhcccccCCCEEEEEecCCCCCCcccccccccCChHHHHHhhc
Q 007179 556 E-EEENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSILLLG 604 (614)
Q Consensus 556 ~-~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~w~g~~G~i~~~~~~~~~~ 604 (614)
+ .+.++|+++.. + +.+..+ +. |.+.+|++++.+.+....
T Consensus 138 d~~~~~eL~~l~~---~--~~~~~~--~~---~~~~~g~v~~~l~~~~~~ 177 (246)
T cd06218 138 DLFLVEEFEALGA---E--VYVATD--DG---SAGTKGFVTDLLKELLAE 177 (246)
T ss_pred hhhhHHHHHhhCC---c--EEEEcC--CC---CCCcceehHHHHHHHhhc
Confidence 2 24468877632 2 223322 23 678899999876665544
No 45
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=99.83 E-value=1.8e-19 Score=179.75 Aligned_cols=146 Identities=20% Similarity=0.321 Sum_probs=123.1
Q ss_pred cceeEEEEEEEEecCCEEEEEEeCCCCc--ccCCCCEEEEEeCCCCCCccccceeccCCCCC-cEEEEEEec--CccchH
Q 007179 402 SIKAVSIQKVAVYPGNVLALHMSKPDRF--RYKSGQYMFVNCAAVSPFEWHPFSITSAPDDD-YLSVHIRTL--GDWTRQ 476 (614)
Q Consensus 402 ~~~~~~v~~~~~~~~~v~~l~l~~~~~~--~~~pGQ~v~l~~p~~~~~~~hpfTias~p~~~-~l~l~ir~~--g~~T~~ 476 (614)
.+..++|.+++..+++++.+++..|.+. .|+||||+.|.++..+....|.|||+|+|.++ .+.+.||+. |..|+.
T Consensus 4 ~~~~~~V~~v~~~t~di~sf~l~~~~g~~~~f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~~~~~~isVk~~~~G~~S~~ 83 (266)
T COG1018 4 GFRRVTVTSVEPETDDVFSFTLEPPDGLRLDFEPGQYITVGLPNGGEPLLRAYSLSSAPDEDSLYRISVKREDGGGGSNW 83 (266)
T ss_pred ceEEEEEEEEEEecCceEEEEEEcCCCCccccCCCCeEEEEecCCCceeeEEEEeccCCCCCceEEEEEEEeCCCcccHH
Confidence 3567899999999999999999998876 59999999999998877889999999999875 899999998 678999
Q ss_pred HHHHhhhcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhhcccch
Q 007179 477 LRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIEE 556 (614)
Q Consensus 477 L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~~~~~~ 556 (614)
|.+.++ + |+++.|.+|.|.+..+....++++|+||||||||++||++.+....+ .+.
T Consensus 84 Lh~~lk-------~---------------Gd~l~v~~P~G~F~l~~~~~~~~llla~G~GITP~lSml~~~~~~~~-~~v 140 (266)
T COG1018 84 LHDHLK-------V---------------GDTLEVSAPAGDFVLDDLPERKLLLLAGGIGITPFLSMLRTLLDRGP-ADV 140 (266)
T ss_pred HHhcCC-------C---------------CCEEEEecCCCCccCCCCCCCcEEEEeccccHhHHHHHHHHHHHhCC-CCE
Confidence 987663 3 58999999999998766555689999999999999999999988774 322
Q ss_pred ------------hHHHHHhcccccCCC
Q 007179 557 ------------EEENDLENGRDTGVN 571 (614)
Q Consensus 557 ------------~~~~~l~~l~~~~~~ 571 (614)
.|.+| +.+.++.++
T Consensus 141 ~l~h~~R~~~~~af~de-~~l~~~~~~ 166 (266)
T COG1018 141 VLVHAARTPADLAFRDE-LELAAELPN 166 (266)
T ss_pred EEEEecCChhhcchhhH-HHHHhhCCC
Confidence 35566 666666665
No 46
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=99.83 E-value=1.3e-19 Score=184.35 Aligned_cols=163 Identities=21% Similarity=0.357 Sum_probs=123.1
Q ss_pred EEEEEEEEecCCEEEEEEeCCC-CcccCCCCEEEEEeCCCCCCccccceeccCC-CCCcEEEEEEecCccchHHHHHhhh
Q 007179 406 VSIQKVAVYPGNVLALHMSKPD-RFRYKSGQYMFVNCAAVSPFEWHPFSITSAP-DDDYLSVHIRTLGDWTRQLRTVFSE 483 (614)
Q Consensus 406 ~~v~~~~~~~~~v~~l~l~~~~-~~~~~pGQ~v~l~~p~~~~~~~hpfTias~p-~~~~l~l~ir~~g~~T~~L~~~~~~ 483 (614)
++|++++.+++++..++++.|+ ...++||||+.|+++..+ ++|||||+|.| +++.++|+||..|..|+.|.+ ++
T Consensus 2 ~~I~~~~~~t~~~~~l~l~~~~~~~~~~pGQfv~l~~~~~~--~~rpySias~~~~~~~i~l~vk~~G~~T~~L~~-l~- 77 (281)
T PRK06222 2 YKILEKEELAPNVFLMEIEAPRVAKKAKPGQFVIVRIDEKG--ERIPLTIADYDREKGTITIVFQAVGKSTRKLAE-LK- 77 (281)
T ss_pred cEEEEEEEecCCEEEEEEeCchhhccCCCCeEEEEEeCCCC--CceeeEeeEEcCCCCEEEEEEEeCCcHHHHHhc-CC-
Confidence 3688899999999999998775 357999999999997544 57999999976 467899999999999988863 31
Q ss_pred cCCCCCCCCCccccccCCCCCCCCEE-EEeCccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhhcc---------
Q 007179 484 VCRPPPNGISGLLRAEGHNNPDFPRV-LIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKA--------- 553 (614)
Q Consensus 484 ~~~~~~~g~~~~~~~~~~~~~~~~~v-~i~GPyG~~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~~~--------- 553 (614)
+ ++++ .|.||+|.+.. ....+++++||||+||||++|+++++.++..+
T Consensus 78 ------~---------------Gd~v~~i~GP~G~~~~-~~~~~~~llIaGGiGiaPl~~l~~~l~~~~~~v~l~~g~r~ 135 (281)
T PRK06222 78 ------E---------------GDSILDVVGPLGKPSE-IEKFGTVVCVGGGVGIAPVYPIAKALKEAGNKVITIIGARN 135 (281)
T ss_pred ------C---------------CCEEeeEEcCCCCCcc-cCCCCeEEEEeCcCcHHHHHHHHHHHHHCCCeEEEEEecCC
Confidence 2 4888 69999999764 33467999999999999999999998765432
Q ss_pred cchh-HHHHHhcccccCCCEEEEEecCCCCCCcccccccccCChHHHHHhhc
Q 007179 554 IEEE-EENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSILLLG 604 (614)
Q Consensus 554 ~~~~-~~~~l~~l~~~~~~~~v~~~~~~~~~~~~w~g~~G~i~~~~~~~~~~ 604 (614)
.++. +.++|+++.. + ++++++ ++ |.|.+|+|++...+.+.+
T Consensus 136 ~~d~~~~~el~~~~~---~--~~v~~~--d~---~~g~~G~v~~~l~~~~~~ 177 (281)
T PRK06222 136 KDLLILEDEMKAVSD---E--LYVTTD--DG---SYGRKGFVTDVLKELLES 177 (281)
T ss_pred HHHhhcHHHHHhhCC---e--EEEEcC--CC---CcCcccchHHHHHHHhhc
Confidence 1122 3457766532 1 223332 23 789999999877665543
No 47
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=99.82 E-value=2.6e-19 Score=180.17 Aligned_cols=162 Identities=21% Similarity=0.312 Sum_probs=123.6
Q ss_pred eEEEEEEEEecCCEEEEEEeCCCCcccCCCCEEEEEeCCCCCCccccceeccCCCCCcEEEEEEecCccchHHHHHhhhc
Q 007179 405 AVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRTLGDWTRQLRTVFSEV 484 (614)
Q Consensus 405 ~~~v~~~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~p~~~~~~~hpfTias~p~~~~l~l~ir~~g~~T~~L~~~~~~~ 484 (614)
.++|+++...+++++.++++.| +.++||||+.|.+|..+ .|||||++. +++.++|+||..|..|..|.+ ++
T Consensus 7 ~~~v~~~~~~t~~~~~~~~~~~--~~~~pGQ~v~l~~~~~~---~~pySi~~~-~~~~l~~~Vk~~G~~S~~L~~-l~-- 77 (261)
T TIGR02911 7 KSEILEIIKHTDIEYTFRMSYD--GPVKPGQFFEVSLPKYG---EAPISVSGI-GEGYIDLTIRRVGKVTDEVFT-LK-- 77 (261)
T ss_pred eEEEEEEeeccCCEEEEEcCCC--CCCCCCcEEEEEecCCC---ccceecCCC-CCCeEEEEEEeCchhhHHHHc-CC--
Confidence 5788899999999999998764 67999999999998753 589999985 568899999999999988753 31
Q ss_pred CCCCCCCCCccccccCCCCCCCCEEEEeCccCC-CCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhhcc-cc-------
Q 007179 485 CRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGA-PAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKA-IE------- 555 (614)
Q Consensus 485 ~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~-~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~~~-~~------- 555 (614)
+ ++++.|+||||. +..+....++++|||||+||||++|++++++++... .+
T Consensus 78 -----~---------------Gd~v~i~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~sil~~l~~~~~~~~~v~L~~~~ 137 (261)
T TIGR02911 78 -----E---------------GDNLFLRGPYGNGFDVDNYKHKELVVVAGGTGVAPVKGVVEYFVKNPKEIKSLNLILGF 137 (261)
T ss_pred -----C---------------CCEEEEecCCCCCcccCccCCceEEEEecccCcHHHHHHHHHHHhCcccCceEEEEEec
Confidence 2 489999999999 433333567999999999999999999998865322 11
Q ss_pred ----h-hHHHHHhcccccCCCEEEEEecCCCCCCcccccccccCChHHHH
Q 007179 556 ----E-EEENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSI 600 (614)
Q Consensus 556 ----~-~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~w~g~~G~i~~~~~~ 600 (614)
+ .+.++|+++.+. .+.. ++++++.++ |.+..|++++...+
T Consensus 138 r~~~~~~~~~eL~~l~~~-~~~~-~~~~~~~~~---~~~~~g~v~~~l~~ 182 (261)
T TIGR02911 138 KTPDDILFKEDIAEWKGN-INLT-LTLDEAEED---YKGNIGLVTKYIPE 182 (261)
T ss_pred CCHHHhhHHHHHHHHHhc-CcEE-EEEcCCCCC---CcCCeeccCHhHHh
Confidence 1 245688888653 3433 334455555 88999999976654
No 48
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=99.82 E-value=1.9e-19 Score=179.67 Aligned_cols=157 Identities=22% Similarity=0.327 Sum_probs=118.8
Q ss_pred EEEEEEecCCEEEEEEeCCC-CcccCCCCEEEEEeCCCCCCccccceeccCC-CCCcEEEEEEecCccchHHHHHhhhcC
Q 007179 408 IQKVAVYPGNVLALHMSKPD-RFRYKSGQYMFVNCAAVSPFEWHPFSITSAP-DDDYLSVHIRTLGDWTRQLRTVFSEVC 485 (614)
Q Consensus 408 v~~~~~~~~~v~~l~l~~~~-~~~~~pGQ~v~l~~p~~~~~~~hpfTias~p-~~~~l~l~ir~~g~~T~~L~~~~~~~~ 485 (614)
|++++.+++++++++++.|+ .+.++||||+.|+++..+...+|||||+|.| ++++++|+||..|..|+.|.+ ++
T Consensus 1 i~~~~~~t~~~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~rpySi~s~~~~~~~l~l~i~~~G~~t~~l~~-~~--- 76 (243)
T cd06192 1 IVKKEQLEPNLVLLTIKAPLAARLFRPGQFVFLRNFESPGLERIPLSLAGVDPEEGTISLLVEIRGPKTKLIAE-LK--- 76 (243)
T ss_pred CceEEEecCCEEEEEEEccchhhcCCCCCeEEEecCCCCCceeeeeEeeecCCCCCEEEEEEEEcCchHHHHHh-CC---
Confidence 35678899999999999876 4689999999999986555688999999987 468999999999999988753 31
Q ss_pred CCCCCCCCccccccCCCCCCCCEEEEeCccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhhcc---------cch
Q 007179 486 RPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKA---------IEE 556 (614)
Q Consensus 486 ~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~~~---------~~~ 556 (614)
+ ++++.|.||||.+.......++++|||||+||||++|+++++.+..++ .++
T Consensus 77 ----~---------------G~~l~i~gP~G~~~~~~~~~~~~lliagGtGiap~~~~l~~~~~~~~~v~l~~~~r~~~d 137 (243)
T cd06192 77 ----P---------------GEKLDVMGPLGNGFEGPKKGGTVLLVAGGIGLAPLLPIAKKLAANGNKVTVLAGAKKAKE 137 (243)
T ss_pred ----C---------------CCEEEEEccCCCCCccCCCCCEEEEEeCcccHHHHHHHHHHHHHCCCeEEEEEecCcHHH
Confidence 2 489999999998765433468999999999999999999999875321 112
Q ss_pred h-HHHHHhcccccCCCEEEEEecCCCCCCcccccccccCChH
Q 007179 557 E-EENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDK 597 (614)
Q Consensus 557 ~-~~~~l~~l~~~~~~~~v~~~~~~~~~~~~w~g~~G~i~~~ 597 (614)
. +.++|+++. ...++++ + ++ |.+..|++++.
T Consensus 138 ~~~~~el~~~~----~~~~~~~-~--~~---~~~~~g~v~~~ 169 (243)
T cd06192 138 EFLDEYFELPA----DVEIWTT-D--DG---ELGLEGKVTDS 169 (243)
T ss_pred HHHHHHHHhhc----CeEEEEe-c--CC---CCccceeechh
Confidence 2 345776651 2233333 2 33 77888988765
No 49
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=99.82 E-value=2.8e-19 Score=183.33 Aligned_cols=174 Identities=16% Similarity=0.281 Sum_probs=128.1
Q ss_pred hccceeEEEEEEEEecCCEEEEEEeCCC---CcccCCCCEEEEEeCCCCC----CccccceeccCCC-CCcEEEEEEec-
Q 007179 400 RSSIKAVSIQKVAVYPGNVLALHMSKPD---RFRYKSGQYMFVNCAAVSP----FEWHPFSITSAPD-DDYLSVHIRTL- 470 (614)
Q Consensus 400 r~~~~~~~v~~~~~~~~~v~~l~l~~~~---~~~~~pGQ~v~l~~p~~~~----~~~hpfTias~p~-~~~l~l~ir~~- 470 (614)
...++.++|++++.+++++..++++.+. ...++||||+.|+++..+. ...||||++|.|. ++.++|+||..
T Consensus 30 ~~~~~~~~v~~~~~~s~d~~~~~~~~~~~~~~~~~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~~~~~i~~~Ik~~~ 109 (300)
T PTZ00319 30 PDMFQHFKLIKKTEVTHDTFIFRFALHSPTQRLGLPIGQHIVFRCDCTTPGKPETVQHSYTPISSDDEKGYVDFLIKVYF 109 (300)
T ss_pred cCceEEEEEEEEEEcCCCceEEEEECCCCcccCCCccceEEEEEEEeCCCCccceEEeeeccCCCcccCCEEEEEEEEec
Confidence 3456778999999999999999998643 2679999999999975321 3579999999885 57899999986
Q ss_pred ----------CccchHHHHHhhhcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCCCCCC---------------CCC
Q 007179 471 ----------GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDY---------------KEY 525 (614)
Q Consensus 471 ----------g~~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~---------------~~~ 525 (614)
|..|+.|. .++ + |+.+.|+||+|.+.... ...
T Consensus 110 ~~~~~~~~~~G~~S~~L~-~l~-------~---------------Gd~v~i~gP~G~f~~~~~~~~~~~~~~~~~~~~~~ 166 (300)
T PTZ00319 110 KGVHPSFPNGGRLSQHLY-HMK-------L---------------GDKIEMRGPVGKFEYLGNGTYTVHKGKGGLKTMHV 166 (300)
T ss_pred cCCCCCCCCCCChhhhhh-cCC-------C---------------CCEEEEEccceeeEecCCcceeecccccccccccc
Confidence 67788774 231 2 58999999999874211 123
Q ss_pred CeEEEEEeCcCHHHHHHHHHHHHHhhccc-c-----------h-hHHHHHhcccccCCCEE-EEEecC-CCCCCcccccc
Q 007179 526 EVVLLVGLGIGATPMISIVKDIVNNMKAI-E-----------E-EEENDLENGRDTGVNTT-IIIIDN-NYEPFFFWTQK 590 (614)
Q Consensus 526 ~~vvlIagG~GItp~~s~l~~l~~~~~~~-~-----------~-~~~~~l~~l~~~~~~~~-v~~~~~-~~~~~~~w~g~ 590 (614)
++++|||||+||||++||++++++..... + + .+.++|+++ +...+.. ++++++ +.+. |.+.
T Consensus 167 ~~illIAgGtGIaP~~sml~~l~~~~~~~~~i~liyg~r~~~dl~~~~eL~~~-~~~~~~~~~~~~~~~~~~~---~~~~ 242 (300)
T PTZ00319 167 DAFAMIAGGTGITPMLQIIHAIKKNKEDRTKVFLVYANQTEDDILLRKELDEA-AKDPRFHVWYTLDREATPE---WKYG 242 (300)
T ss_pred ceEEEEecCcccCHHHHHHHHHHhCCCCCceEEEEEecCCHHHhhHHHHHHHH-hhCCCEEEEEEECCCCCCC---cccc
Confidence 58999999999999999999998753221 1 1 245688774 3445543 334443 4445 9999
Q ss_pred cccCChHHHH
Q 007179 591 KGPIQDKKSI 600 (614)
Q Consensus 591 ~G~i~~~~~~ 600 (614)
.|+|++...+
T Consensus 243 ~G~v~~~~l~ 252 (300)
T PTZ00319 243 TGYVDEEMLR 252 (300)
T ss_pred cceeCHHHHH
Confidence 9999987654
No 50
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=99.82 E-value=3.3e-19 Score=185.46 Aligned_cols=170 Identities=16% Similarity=0.191 Sum_probs=125.7
Q ss_pred EEEEEEEEec-----CCEEEEEEeCCCCcccCCCCEEEEEeCCC---C-CCccccceeccCCC-----CCcEEEEEEec-
Q 007179 406 VSIQKVAVYP-----GNVLALHMSKPDRFRYKSGQYMFVNCAAV---S-PFEWHPFSITSAPD-----DDYLSVHIRTL- 470 (614)
Q Consensus 406 ~~v~~~~~~~-----~~v~~l~l~~~~~~~~~pGQ~v~l~~p~~---~-~~~~hpfTias~p~-----~~~l~l~ir~~- 470 (614)
+++...+.+. +++.+++|..+..+.|+||||+.|.+|+. + +...|||||+|+|. +++++|+||+.
T Consensus 93 ~~v~~n~~i~~~~~~~~v~~l~l~~~~~~~f~~GQfv~I~~~g~~~~g~p~~~R~YSIAS~p~~~~~~~~~l~L~Vk~~~ 172 (367)
T PLN03115 93 GRCLLNTKITGDDAPGETWHMVFSTEGEIPYREGQSIGVIPDGIDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLV 172 (367)
T ss_pred EEEEeecccccCCCCCceEEEEEcCCCCCCcCCCCEEEEEcCCcCCCCCcCceeeeecCCCCcccCCCCCEEEEEEEEEE
Confidence 4555555554 38999999887789999999999998753 2 23579999999983 45899999964
Q ss_pred ----------CccchHHHHHhhhcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCCCCCC-CCCCeEEEEEeCcCHHH
Q 007179 471 ----------GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDY-KEYEVVLLVGLGIGATP 539 (614)
Q Consensus 471 ----------g~~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~-~~~~~vvlIagG~GItp 539 (614)
|..|..|.+ ++ + |+.|.|.||+|.+.... ....++|||||||||||
T Consensus 173 y~~~~g~~~~G~~S~~L~~-Lk-------~---------------Gd~V~v~GP~G~~fllp~~~~~~iImIAgGTGIAP 229 (367)
T PLN03115 173 YTNDQGEIVKGVCSNFLCD-LK-------P---------------GAEVKITGPVGKEMLMPKDPNATIIMLATGTGIAP 229 (367)
T ss_pred eecCCCccCCeehHhhHhh-CC-------C---------------cCEEEEEeecCCceeCCcCCCCCEEEEeCCeeHHH
Confidence 456777765 32 3 58999999999875322 34468999999999999
Q ss_pred HHHHHHHHHHhhcc----------------cch-hHHHHHhcccccCC-C-EEEEEecCCCCCCcccccccccCChHHHH
Q 007179 540 MISIVKDIVNNMKA----------------IEE-EEENDLENGRDTGV-N-TTIIIIDNNYEPFFFWTQKKGPIQDKKSI 600 (614)
Q Consensus 540 ~~s~l~~l~~~~~~----------------~~~-~~~~~l~~l~~~~~-~-~~v~~~~~~~~~~~~w~g~~G~i~~~~~~ 600 (614)
++|++++++..... ..+ .+.+||+++.+.++ + ...++.+++.+. |.|.+|+|++.+.+
T Consensus 230 ~rs~L~~~~~~~~~~~~~~~~v~Lf~G~R~~~dlly~dELe~l~~~~p~~f~v~~a~SR~~~~---~~G~kgyVqd~i~e 306 (367)
T PLN03115 230 FRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQTN---AKGEKMYIQTRMAE 306 (367)
T ss_pred HHHHHHHHHhhccccccCCCcEEEEEccCCHHHhhHHHHHHHHHHhCCCCEEEEEEEcCCCcc---cCCcceeehhHHHH
Confidence 99999987643221 111 35579998877665 4 345567777766 99999999987664
Q ss_pred H
Q 007179 601 L 601 (614)
Q Consensus 601 ~ 601 (614)
.
T Consensus 307 ~ 307 (367)
T PLN03115 307 Y 307 (367)
T ss_pred H
Confidence 3
No 51
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.81 E-value=3.6e-19 Score=190.66 Aligned_cols=171 Identities=16% Similarity=0.275 Sum_probs=130.5
Q ss_pred eeEEEEEEEEecCCEEEEEEeCC--CCcccCCCCEEEEEeCCC-----------------------------CCCccccc
Q 007179 404 KAVSIQKVAVYPGNVLALHMSKP--DRFRYKSGQYMFVNCAAV-----------------------------SPFEWHPF 452 (614)
Q Consensus 404 ~~~~v~~~~~~~~~v~~l~l~~~--~~~~~~pGQ~v~l~~p~~-----------------------------~~~~~hpf 452 (614)
..++|++++.+++++.+++++.+ .+..|+||||+.|++|.. +....|||
T Consensus 134 ~~~~V~~~~~ls~~i~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~y 213 (409)
T PRK05464 134 WECTVISNDNVATFIKELVLKIPEGEEVPFRAGGYIQIEAPPHKVKYKDFDIPEEYRGDWDKFNLFRLVSKVDEPVIRAY 213 (409)
T ss_pred EEEEEEEcccCCchhheEEEecCCCCcccccCCceEEEEcccccccccccccchhhhhhhhhccccceeccCCCceeeee
Confidence 46789999999999999999987 367899999999999742 12357999
Q ss_pred eeccCCCC-CcEEEEEEec-----------CccchHHHHHhhhcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCCCC
Q 007179 453 SITSAPDD-DYLSVHIRTL-----------GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQ 520 (614)
Q Consensus 453 Tias~p~~-~~l~l~ir~~-----------g~~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~ 520 (614)
||+|.|.+ +.++|+||.. |..|..|.+ ++ + ++.+.|.||+|.+..
T Consensus 214 Sias~p~~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~-l~-------~---------------Gd~v~v~gP~G~f~~ 270 (409)
T PRK05464 214 SMANYPEEKGIIMLNVRIATPPPGNPDVPPGIMSSYIFS-LK-------P---------------GDKVTISGPFGEFFA 270 (409)
T ss_pred ccCCCCCCCCeEEEEEEEeecCCCcCCCCCCchhhHHHh-CC-------C---------------CCEEEEEccccCcEe
Confidence 99999964 6899999973 667887764 31 2 589999999999875
Q ss_pred CCCCCCeEEEEEeCcCHHHHHHHHHHHHHhhcc-cc-----------hh-HHHHHhcccccCCCEEE-EEecCC--CCCC
Q 007179 521 DYKEYEVVLLVGLGIGATPMISIVKDIVNNMKA-IE-----------EE-EENDLENGRDTGVNTTI-IIIDNN--YEPF 584 (614)
Q Consensus 521 ~~~~~~~vvlIagG~GItp~~s~l~~l~~~~~~-~~-----------~~-~~~~l~~l~~~~~~~~v-~~~~~~--~~~~ 584 (614)
. ...+++||||||+||||++|+++++++.... .+ +. +.++++++.+++++..+ .+++++ .+.
T Consensus 271 ~-~~~~~ivlIAgGtGIaP~~sml~~~l~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~- 348 (409)
T PRK05464 271 K-DTDAEMVFIGGGAGMAPMRSHIFDQLKRLKSKRKISFWYGARSLREMFYVEDFDQLAAENPNFKWHVALSDPLPEDN- 348 (409)
T ss_pred c-CCCceEEEEEeccChhHHHHHHHHHHhCCCCCceEEEEEecCCHHHhhHHHHHHHHHHhCCCeEEEEEEcCCCCCCC-
Confidence 4 4568999999999999999999988765221 11 12 45688888777777443 344433 234
Q ss_pred cccccccccCChHHHHH
Q 007179 585 FFWTQKKGPIQDKKSIL 601 (614)
Q Consensus 585 ~~w~g~~G~i~~~~~~~ 601 (614)
|.|.+|+|++...+.
T Consensus 349 --~~g~~G~v~~~l~~~ 363 (409)
T PRK05464 349 --WTGYTGFIHNVLYEN 363 (409)
T ss_pred --CCCccceeCHHHHHh
Confidence 889999999877653
No 52
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.81 E-value=6e-19 Score=174.87 Aligned_cols=154 Identities=23% Similarity=0.314 Sum_probs=117.3
Q ss_pred EEEEEEEEecCCEEEEEEeCCCCcccCCCCEEEEEeCCCCCCccccceeccCCCCCcEEEEEEecCccchHHHHHhhhcC
Q 007179 406 VSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRTLGDWTRQLRTVFSEVC 485 (614)
Q Consensus 406 ~~v~~~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~p~~~~~~~hpfTias~p~~~~l~l~ir~~g~~T~~L~~~~~~~~ 485 (614)
++|++++.+++++.+++++.| ..|+||||+.|.+|+. ..|||||+|.| +.++|+||..|.+|+.|.+ ++
T Consensus 1 ~~v~~~~~~t~~~~~~~l~~~--~~~~pGQ~v~l~~~~~---~~~~~Si~s~~--~~l~~~v~~~G~~s~~L~~-l~--- 69 (233)
T cd06220 1 VTIKEVIDETPTVKTFVFDWD--FDFKPGQFVMVWVPGV---DEIPMSLSYID--GPNSITVKKVGEATSALHD-LK--- 69 (233)
T ss_pred CEEEEEEEEcCCEEEEEEecC--CCCCCCceEEEEeCCC---CcceeEEecCC--CeEEEEEEecChHHHHHHh-cC---
Confidence 368899999999999999875 5899999999999865 35999999998 8899999999999999975 32
Q ss_pred CCCCCCCCccccccCCCCCCCCEEEEeCccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhh--------cccch-
Q 007179 486 RPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNM--------KAIEE- 556 (614)
Q Consensus 486 ~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~--------~~~~~- 556 (614)
+ ++++.|+||+|.+.. .. .+++|+||||+||||++|+++++.+.. ++..+
T Consensus 70 ----~---------------Gd~v~i~gP~G~~f~-~~-~~~~vliAgGtGitP~~sil~~~~~~~~i~l~~~~r~~~d~ 128 (233)
T cd06220 70 ----E---------------GDKLGIRGPYGNGFE-LV-GGKVLLIGGGIGIAPLAPLAERLKKAADVTVLLGARTKEEL 128 (233)
T ss_pred ----C---------------CCEEEEECcCCCCcc-CC-CCeEEEEecCcChHHHHHHHHHHHhcCCEEEEEecCChHHC
Confidence 2 489999999998432 22 689999999999999999999998751 11112
Q ss_pred hHHHHHhcccccCCCEEEEEecCCCCCCcccccccccCChHHHHHh
Q 007179 557 EEENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSILL 602 (614)
Q Consensus 557 ~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~w~g~~G~i~~~~~~~~ 602 (614)
.+.++|++. .+.. .++ + ++ |.+.+|++++.+.+..
T Consensus 129 ~~~~eL~~~----~~~~-~~~-~--~~---~~~~~g~~~~~l~~~~ 163 (233)
T cd06220 129 LFLDRLRKS----DELI-VTT-D--DG---SYGFKGFVTDLLKELD 163 (233)
T ss_pred hhHHHHhhC----CcEE-EEE-e--CC---CCcccceehHHHhhhc
Confidence 234567652 1222 222 2 23 7788999998665544
No 53
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.80 E-value=1e-18 Score=174.43 Aligned_cols=165 Identities=23% Similarity=0.361 Sum_probs=125.4
Q ss_pred eEEEEEEEEecCCEEEEEEeCCCC-cccCCCCEEEEEeCCCCCCccccceeccCCCC-CcEEEEEEe--cCccchHHHHH
Q 007179 405 AVSIQKVAVYPGNVLALHMSKPDR-FRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRT--LGDWTRQLRTV 480 (614)
Q Consensus 405 ~~~v~~~~~~~~~v~~l~l~~~~~-~~~~pGQ~v~l~~p~~~~~~~hpfTias~p~~-~~l~l~ir~--~g~~T~~L~~~ 480 (614)
.++|.+++.+++++..++++.+.. +.++||||+.|+.|+ ...+|||++|.|++ +.++++|+. .|..|+.+.+.
T Consensus 9 ~~~I~~~~~is~~~~~l~~~~~~~~~~~~pGQfv~l~~~~---~~~~P~si~~~~~~~g~~~l~i~~~~~G~~T~~i~~~ 85 (252)
T COG0543 9 SYKVVEKEEISPDTFLLRLRLPFVALTFKPGQFVMLRVPG---GVRRPYSLASAPDDKGELELHIRVYEVGKVTKYIFGL 85 (252)
T ss_pred ccEEEEEEEecCceEEEEEeccccccccCCCcEEEEEeCC---CcEEEeeeccCCCcCCcEEEEEEEEeCChHHHHHhhc
Confidence 378999999999999999998765 689999999999998 38899999999874 555555554 78899888765
Q ss_pred hhhcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhh--c------
Q 007179 481 FSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNM--K------ 552 (614)
Q Consensus 481 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~--~------ 552 (614)
. + ++.+.+.||||++.......+++++||||+|++|++++++++.+.. .
T Consensus 86 k--------~---------------gd~i~v~GP~G~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~~~~~V~~~~ 142 (252)
T COG0543 86 K--------E---------------GDKIRVRGPLGNGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKGDANKVTLLY 142 (252)
T ss_pred c--------C---------------CCEEEEEcCCCCCccccccCCcEEEEecccCHhHHHHHHHHHHhcCCCceEEEEE
Confidence 2 2 4789999999998764444556999999999999999999999854 1
Q ss_pred ---ccchh-HHHHHhcccccCCCEEEEEecCCCCCCcccccccccCChH-HHHHhhc
Q 007179 553 ---AIEEE-EENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDK-KSILLLG 604 (614)
Q Consensus 553 ---~~~~~-~~~~l~~l~~~~~~~~v~~~~~~~~~~~~w~g~~G~i~~~-~~~~~~~ 604 (614)
+.++. +.++++++..+ ..+++++ ++ |.|.+|+|+.+ ..+++..
T Consensus 143 G~~~~~dl~~~~el~~~~~~---~~~~~~~---~~---~~G~~G~v~~~~~~~~~~~ 190 (252)
T COG0543 143 GARTAKDLLLLDELEELAEK---EVHPVTD---DG---WKGRKGFVTTDVLKELLDL 190 (252)
T ss_pred eccChhhcccHHHHHHhhcC---cEEEEEC---CC---CCccCcceeHHHHhhhccc
Confidence 12222 34588887544 3444554 44 89999999544 4444433
No 54
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.80 E-value=9.2e-19 Score=173.22 Aligned_cols=180 Identities=17% Similarity=0.251 Sum_probs=146.7
Q ss_pred cceeEEEEEEEEecCCEEEEEEeCCC---CcccCCCCEEEEEeCCCCCCccccceeccCCCC-CcEEEEEEec--Cccch
Q 007179 402 SIKAVSIQKVAVYPGNVLALHMSKPD---RFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRTL--GDWTR 475 (614)
Q Consensus 402 ~~~~~~v~~~~~~~~~v~~l~l~~~~---~~~~~pGQ~v~l~~p~~~~~~~hpfTias~p~~-~~l~l~ir~~--g~~T~ 475 (614)
.+..+++.+.+.+++|+..++|..|. .+....|||+++.+|..+....||||..|.+.+ +.+++.||.+ |..|+
T Consensus 50 ~~~~~~l~~k~~~shdt~~f~f~lp~~~~~l~lp~g~hv~~~~~i~g~~vvRpYTPvs~~~~~g~~~l~VK~Y~~G~mS~ 129 (286)
T KOG0534|consen 50 SYYPFRLIDKTELSHDTSLFRFVLPSADHVLGLPIGQHVVLKAPIGGKLVVRPYTPVSLDDDKGYFDLVVKVYPKGKMSQ 129 (286)
T ss_pred ceEEEEEEEEEeccCCceeEEEecCCchhccCcccceEEEEEecCCCcEEEEecCCccCccccceEEEEEEeccCCcccH
Confidence 36788999999999999999999874 477899999999999988888999999998876 7999999998 56777
Q ss_pred HHHHHhhhcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhhccc-
Q 007179 476 QLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAI- 554 (614)
Q Consensus 476 ~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~~~~- 554 (614)
.|..+ +. ++.|.+.||.|....+...++++.|||||+||||+++++++++....+.
T Consensus 130 ~l~~L--------ki---------------Gd~ve~rGP~G~~~~~~~~~~~l~miAgGtGItPmlqii~~il~~~~d~t 186 (286)
T KOG0534|consen 130 HLDSL--------KI---------------GDTVEFRGPIGEFKYDPQKAKHLGMIAGGTGITPMLQLIRAILKDPEDTT 186 (286)
T ss_pred HHhcC--------CC---------------CCEEEEecCccceEecCCCcceEEEEecccchhhHHHHHHHHhcCCCCCc
Confidence 66432 23 5899999999998655556899999999999999999999999875432
Q ss_pred -----------ch-hHHHHHhcccccCCC--EEEEEecCCCCCCcccccccccCChHHHH-Hhhcccc
Q 007179 555 -----------EE-EEENDLENGRDTGVN--TTIIIIDNNYEPFFFWTQKKGPIQDKKSI-LLLGYKR 607 (614)
Q Consensus 555 -----------~~-~~~~~l~~l~~~~~~--~~v~~~~~~~~~~~~w~g~~G~i~~~~~~-~~~~~~~ 607 (614)
.+ ++.+||+.+++.+++ ...++++.+.+. |+|..|+|+++++. .+....+
T Consensus 187 ki~lly~N~te~DILlr~eL~~la~~~p~rf~~~y~v~~~~~~---w~~~~g~It~~~i~~~l~~~~~ 251 (286)
T KOG0534|consen 187 KISLLYANKTEDDILLREELEELASKYPERFKVWYVVDQPPEI---WDGSVGFITKDLIKEHLPPPKE 251 (286)
T ss_pred EEEEEEecCCccccchHHHHHHHHhhCcceEEEEEEEcCCccc---ccCccCccCHHHHHhhCCCCCC
Confidence 22 356699999888884 445677777777 99999999999766 4444333
No 55
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.79 E-value=7.4e-19 Score=188.02 Aligned_cols=170 Identities=18% Similarity=0.283 Sum_probs=128.6
Q ss_pred eeEEEEEEEEecCCEEEEEEeCCC--CcccCCCCEEEEEeCCC-----------------------------CCCccccc
Q 007179 404 KAVSIQKVAVYPGNVLALHMSKPD--RFRYKSGQYMFVNCAAV-----------------------------SPFEWHPF 452 (614)
Q Consensus 404 ~~~~v~~~~~~~~~v~~l~l~~~~--~~~~~pGQ~v~l~~p~~-----------------------------~~~~~hpf 452 (614)
..++|++++.+++++.+++++.+. ++.|+||||+.|.+|.. +...+|||
T Consensus 130 ~~~~v~~~~~~s~~i~~l~l~~~~~~~~~~~pGQfv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~y 209 (405)
T TIGR01941 130 WECEVISNDNVATFIKELVLKLPDGESVPFKAGGYIQIEAPPHVVKYADFDIPPEYRGDWEKFNLFDLVSKVDEETVRAY 209 (405)
T ss_pred eeeEEEEcccccchhheEEEecCCCceeeecCCceEEEEcccccccccccccchhhhhhHhhhcchheeccCCCccceee
Confidence 457889999999999999998764 47899999999999743 12356999
Q ss_pred eeccCCC-CCcEEEEEEec-----------CccchHHHHHhhhcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCCCC
Q 007179 453 SITSAPD-DDYLSVHIRTL-----------GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQ 520 (614)
Q Consensus 453 Tias~p~-~~~l~l~ir~~-----------g~~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~ 520 (614)
||+|.|+ ++.++|+||.. |..|..|.+ ++ + |+++.|.||+|.+..
T Consensus 210 Sias~p~~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~-l~-------~---------------Gd~v~i~gP~G~f~l 266 (405)
T TIGR01941 210 SMANYPAEKGIIKLNVRIATPPFINSDIPPGIMSSYIFS-LK-------P---------------GDKVTISGPFGEFFA 266 (405)
T ss_pred cCCCCCCCCCeEEEEEEEeccCcccCCCCCCcHHHHHhc-CC-------C---------------cCEEEEEeccCCCee
Confidence 9999996 46899999973 667877764 31 2 589999999999875
Q ss_pred CCCCCCeEEEEEeCcCHHHHHHHHHHHHHhhc-cc-----------chh-HHHHHhcccccCCCEEE-EEecCC--CCCC
Q 007179 521 DYKEYEVVLLVGLGIGATPMISIVKDIVNNMK-AI-----------EEE-EENDLENGRDTGVNTTI-IIIDNN--YEPF 584 (614)
Q Consensus 521 ~~~~~~~vvlIagG~GItp~~s~l~~l~~~~~-~~-----------~~~-~~~~l~~l~~~~~~~~v-~~~~~~--~~~~ 584 (614)
. ...+++||||||+||||++||+++++.... .. .+. +.++++++.+.+++..+ .+++++ .+.
T Consensus 267 ~-~~~~~lvlIAgGtGIaP~lsmi~~~l~~~~~~~~v~l~~g~R~~~dl~~~~el~~l~~~~~~~~~~~~~s~~~~~~~- 344 (405)
T TIGR01941 267 K-DTDAEMVFIGGGAGMAPMRSHIFDQLKRLKSKRKISFWYGARSLREMFYQEDFDQLEAENPNFVWHVALSDPQPEDN- 344 (405)
T ss_pred c-CCCCCEEEEecCcCcchHHHHHHHHHhcCCCCCeEEEEEecCCHHHHhHHHHHHHHHHhCCCeEEEEEeCCCCccCC-
Confidence 3 345789999999999999999998775422 11 112 45688888777777433 344543 234
Q ss_pred cccccccccCChHHHH
Q 007179 585 FFWTQKKGPIQDKKSI 600 (614)
Q Consensus 585 ~~w~g~~G~i~~~~~~ 600 (614)
|.|.+|+|++.+.+
T Consensus 345 --~~g~~G~v~~~l~~ 358 (405)
T TIGR01941 345 --WTGYTGFIHNVLYE 358 (405)
T ss_pred --CCCccceeCHHHHH
Confidence 89999999987654
No 56
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.79 E-value=6.7e-21 Score=163.65 Aligned_cols=99 Identities=39% Similarity=0.843 Sum_probs=7.2
Q ss_pred eEEEEEEEEecCCEEEEEEeCCCC-cccCCCCEEEEEeCCCC--CCccccceeccCCCCCcEEEEEEecCccchHHHHHh
Q 007179 405 AVSIQKVAVYPGNVLALHMSKPDR-FRYKSGQYMFVNCAAVS--PFEWHPFSITSAPDDDYLSVHIRTLGDWTRQLRTVF 481 (614)
Q Consensus 405 ~~~v~~~~~~~~~v~~l~l~~~~~-~~~~pGQ~v~l~~p~~~--~~~~hpfTias~p~~~~l~l~ir~~g~~T~~L~~~~ 481 (614)
++++++++.+++++++++++.|.. ++|+||||++|++|..+ .+|+|||||+|+|+++.++++||..|+||++|.+.+
T Consensus 3 ~~~~~~v~~~~~~~v~i~i~~~~~~~~~~pGq~v~l~~p~~s~~~~q~HPFTIas~~~~~~i~l~ik~~g~~T~~L~~~~ 82 (105)
T PF08022_consen 3 NVRIASVELLPDDVVEITIPKPSSPFKWKPGQYVFLSFPSISKWFWQWHPFTIASSPEDNSITLIIKARGGWTKRLYEHL 82 (105)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cEEEEEEEEcCCCEEEEEEECCCCCCCCCCceEEEEEEcCcCcCcccccccEeeccCCCCEEEEEEEeCCCchHHHHHHH
Confidence 567788999999999999999886 99999999999999999 569999999999999999999999999999999887
Q ss_pred hhcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCC
Q 007179 482 SEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAP 518 (614)
Q Consensus 482 ~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~ 518 (614)
.+..+ +.....++.||||||.+
T Consensus 83 ~~~~~---------------~~~~~~~v~idGPYG~~ 104 (105)
T PF08022_consen 83 SESPS---------------KQGNRLRVFIDGPYGAP 104 (105)
T ss_dssp -----------------------------TTSTTSHH
T ss_pred hhhcc---------------cCCCceEEEEECCCCCC
Confidence 54210 01125789999999974
No 57
>PRK05802 hypothetical protein; Provisional
Probab=99.79 E-value=2.2e-18 Score=177.50 Aligned_cols=125 Identities=22% Similarity=0.346 Sum_probs=103.2
Q ss_pred eeEEEEEEEEecCCEEEEEEeCCCC---cccCCCCEEEEEeCCCCCCccccceeccCCC-CCcEEEEEEecCccchHHHH
Q 007179 404 KAVSIQKVAVYPGNVLALHMSKPDR---FRYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRTLGDWTRQLRT 479 (614)
Q Consensus 404 ~~~~v~~~~~~~~~v~~l~l~~~~~---~~~~pGQ~v~l~~p~~~~~~~hpfTias~p~-~~~l~l~ir~~g~~T~~L~~ 479 (614)
..++|++++.+++++..++++.|.. ..++|||||.|+++..+.+..|||||+++|. ++.++|+||..|..|+.|.+
T Consensus 65 ~~~~I~~~~~~t~dv~~l~l~~p~~~~~~~~~PGQFv~l~~~~~~~~~~rP~SI~~~~~~~g~l~l~ik~~G~~T~~L~~ 144 (320)
T PRK05802 65 YECKIIKKENIEDNLIILTLKVPHKLARDLVYPGSFVFLRNKNSSSFFDVPISIMEADTEENIIKVAIEIRGVKTKKIAK 144 (320)
T ss_pred EeEEEEEEEEecCCEEEEEEECCchhhhccCCCCceEEEEEcCCCCEeEEeeEecccCCCCCEEEEEEEecChhHHHHhc
Confidence 4688999999999999999998754 3479999999999876666779999999874 57899999999999988863
Q ss_pred HhhhcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCC--CCC---CCCCCeEEEEEeCcCHHHHHHHHHHHHHhh
Q 007179 480 VFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAP--AQD---YKEYEVVLLVGLGIGATPMISIVKDIVNNM 551 (614)
Q Consensus 480 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~--~~~---~~~~~~vvlIagG~GItp~~s~l~~l~~~~ 551 (614)
++ + ++++.|.||||+. ... ....+++|+||||+||||++|+++++.++.
T Consensus 145 -l~-------~---------------Gd~l~v~GP~GnG~F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~~~ 198 (320)
T PRK05802 145 -LN-------K---------------GDEILLRGPYWNGILGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYSNG 198 (320)
T ss_pred -CC-------C---------------CCEEEEeCCCCcCcCCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHHcC
Confidence 31 2 4899999999763 221 123568999999999999999999998764
No 58
>PLN02252 nitrate reductase [NADPH]
Probab=99.78 E-value=2.5e-18 Score=197.03 Aligned_cols=174 Identities=14% Similarity=0.234 Sum_probs=133.7
Q ss_pred ccceeEEEEEEEEecCCEEEEEEeCCCC---cccCCCCEEEEEeCCCCCCccccceeccCCC-CCcEEEEEEec------
Q 007179 401 SSIKAVSIQKVAVYPGNVLALHMSKPDR---FRYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRTL------ 470 (614)
Q Consensus 401 ~~~~~~~v~~~~~~~~~v~~l~l~~~~~---~~~~pGQ~v~l~~p~~~~~~~hpfTias~p~-~~~l~l~ir~~------ 470 (614)
..+..++|++++.+++++..++|+.|.. +.++||||++|+++..+....||||++|.++ ++.++|+||.+
T Consensus 632 ~~~~~~~Lv~k~~lS~d~~~f~f~lp~~~~~lgl~pGQhV~l~~~~~g~~~~R~YSpaS~~~~~g~lel~VK~~~~~~~~ 711 (888)
T PLN02252 632 REKIPCRLVEKISLSHDVRLFRFALPSEDHVLGLPVGKHVFLCATINGKLCMRAYTPTSSDDEVGHFELVIKVYFKNVHP 711 (888)
T ss_pred CceEEEEEEEEEEccCCeEEEEEEECCCcccCCCCCCCEEEEEEecCCeEEEeeeEecccCCCCCEEEEEEEEEeccccC
Confidence 4467899999999999999999997753 5789999999999755555689999999985 57899999986
Q ss_pred -----CccchHHHHHhhhcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCCCC--------C--CCCCCeEEEEEeCc
Q 007179 471 -----GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQ--------D--YKEYEVVLLVGLGI 535 (614)
Q Consensus 471 -----g~~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~--------~--~~~~~~vvlIagG~ 535 (614)
|..|+.|.+ + ++ ++.|.|.||+|.+.. + ....++++|||||+
T Consensus 712 ~~p~gG~~S~~L~~-L-------~v---------------Gd~V~V~GP~G~f~y~g~G~f~l~~~~~~~~~vvmIAGGs 768 (888)
T PLN02252 712 KFPNGGLMSQYLDS-L-------PI---------------GDTIDVKGPLGHIEYAGRGSFLVNGKPKFAKKLAMLAGGT 768 (888)
T ss_pred ccCCCCchhhHHhc-C-------CC---------------CCEEEEecCccceeecccceeeeccccccCceEEEEecce
Confidence 557777742 2 12 589999999998631 1 12357999999999
Q ss_pred CHHHHHHHHHHHHHhhcc------------cch-hHHHHHhcccccCCC--EEEEEecCCC-CCCcccccccccCChHHH
Q 007179 536 GATPMISIVKDIVNNMKA------------IEE-EEENDLENGRDTGVN--TTIIIIDNNY-EPFFFWTQKKGPIQDKKS 599 (614)
Q Consensus 536 GItp~~s~l~~l~~~~~~------------~~~-~~~~~l~~l~~~~~~--~~v~~~~~~~-~~~~~w~g~~G~i~~~~~ 599 (614)
||||++++++++++.... ..+ .+.+||+++++.+++ ..+++++++. ++ |.|.+|+|+++..
T Consensus 769 GITPi~silr~ll~~~~d~t~i~Liyg~Rt~~Dil~~eEL~~la~~~p~~~~v~~vls~~~~~~---w~g~~GrV~~~ll 845 (888)
T PLN02252 769 GITPMYQVIQAILRDPEDKTEMSLVYANRTEDDILLREELDRWAAEHPDRLKVWYVVSQVKREG---WKYSVGRVTEAML 845 (888)
T ss_pred ehhHHHHHHHHHHhccCCCCcEEEEEEECCHHHhhHHHHHHHHHHhCCCCEEEEEEecCCCcCC---CCCcCCcCCHHHH
Confidence 999999999999865221 112 245699998777644 4556666654 55 9999999999865
Q ss_pred H
Q 007179 600 I 600 (614)
Q Consensus 600 ~ 600 (614)
+
T Consensus 846 ~ 846 (888)
T PLN02252 846 R 846 (888)
T ss_pred H
Confidence 4
No 59
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=99.77 E-value=5.7e-18 Score=168.96 Aligned_cols=152 Identities=16% Similarity=0.181 Sum_probs=110.9
Q ss_pred CEEEEEEeCC-CCcccCCCCEEEEEeCCCCCCccccceeccCCCCCcEEEEEEecCc-------cchHHHHHhhhcCCCC
Q 007179 417 NVLALHMSKP-DRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRTLGD-------WTRQLRTVFSEVCRPP 488 (614)
Q Consensus 417 ~v~~l~l~~~-~~~~~~pGQ~v~l~~p~~~~~~~hpfTias~p~~~~l~l~ir~~g~-------~T~~L~~~~~~~~~~~ 488 (614)
++.+++++.+ ..+.|+||||+.|.++. ....|||||+|+|+++.++|+||..++ .|+.|.+.++
T Consensus 17 ~v~~l~l~~~~~~~~f~pGQ~v~l~~~~--~~~~R~YSIas~p~~~~l~l~Vk~~~~~~~~~G~~S~~L~~~~~------ 88 (245)
T cd06200 17 PLWRLRLTPPDAGAQWQAGDIAEIGPRH--PLPHREYSIASLPADGALELLVRQVRHADGGLGLGSGWLTRHAP------ 88 (245)
T ss_pred ceEEEEEecCCCCCCccCCcEEEecCCC--CCCCcceEeccCCCCCEEEEEEEEeccCCCCCeeechhhhhCCC------
Confidence 5999999987 57889999999999764 347799999999988899999999753 7777766442
Q ss_pred CCCCCccccccCCCCCCCCEEEEeCccCC-CCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhhc----------cc-ch
Q 007179 489 PNGISGLLRAEGHNNPDFPRVLIDGPYGA-PAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMK----------AI-EE 556 (614)
Q Consensus 489 ~~g~~~~~~~~~~~~~~~~~v~i~GPyG~-~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~~----------~~-~~ 556 (614)
+ +++|.+.||.|. +.. ....+++||||||+||||++|+++++..... +. .+
T Consensus 89 -~---------------Gd~v~i~gp~gg~F~~-~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~~~~l~~g~r~~~~d 151 (245)
T cd06200 89 -I---------------GASVALRLRENPGFHL-PDDGRPLILIGNGTGLAGLRSHLRARARAGRHRNWLLFGERQAAHD 151 (245)
T ss_pred -C---------------CCEEEEEecCCCcccC-CCCCCCEEEEecCcChHHHHHHHHHHHhccCCCeEEEEecCCcccc
Confidence 2 589999998764 443 2345789999999999999999999986432 11 12
Q ss_pred -hHHHHHhcccccCCCEE-EEEecCCCCCCcccccccccCChHHHH
Q 007179 557 -EEENDLENGRDTGVNTT-IIIIDNNYEPFFFWTQKKGPIQDKKSI 600 (614)
Q Consensus 557 -~~~~~l~~l~~~~~~~~-v~~~~~~~~~~~~w~g~~G~i~~~~~~ 600 (614)
.+.+|++++.+.+.+.. ..+.++++ +.+|+|++.+.+
T Consensus 152 ~~~~~el~~~~~~~~~~~~~~~~s~~~-------~~~~~v~~~l~~ 190 (245)
T cd06200 152 FFCREELEAWQAAGHLARLDLAFSRDQ-------AQKRYVQDRLRA 190 (245)
T ss_pred HhHHHHHHHHHHCCCcceEEEEEccCC-------CCCcchHHHHHH
Confidence 35569988877666532 23334322 235777665543
No 60
>PRK05713 hypothetical protein; Provisional
Probab=99.77 E-value=3.3e-18 Score=176.89 Aligned_cols=143 Identities=19% Similarity=0.269 Sum_probs=111.7
Q ss_pred eeEEEEEEEEecCCEEEEEEeCCCCcccCCCCEEEEEeCCCCCCccccceeccCCC-CCcEEEEEEec--CccchHHHHH
Q 007179 404 KAVSIQKVAVYPGNVLALHMSKPDRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRTL--GDWTRQLRTV 480 (614)
Q Consensus 404 ~~~~v~~~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~p~~~~~~~hpfTias~p~-~~~l~l~ir~~--g~~T~~L~~~ 480 (614)
.+++|++++.+++|+++++++.++.+.|+||||+.|.+++. .+|||||+|.|+ ++.++|+||.. |.+|..|. .
T Consensus 92 ~~~~V~~~~~~t~dv~~l~l~~~~~~~~~~GQfv~l~~~~~---~~R~ySias~p~~~~~l~~~I~~~~~G~~s~~l~-~ 167 (312)
T PRK05713 92 LPARVVALDWLGGDVLRLRLEPERPLRYRAGQHLVLWTAGG---VARPYSLASLPGEDPFLEFHIDCSRPGAFCDAAR-Q 167 (312)
T ss_pred CCeEEEEEecCCCCEEEEEEccCCcCCcCCCCEEEEecCCC---cccccccCcCCCCCCeEEEEEEEcCCCccchhhh-c
Confidence 46899999999999999999987778999999999998642 579999999986 57899999954 56787763 2
Q ss_pred hhhcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCC-CCCCC-CCCeEEEEEeCcCHHHHHHHHHHHHHhhcccc---
Q 007179 481 FSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAP-AQDYK-EYEVVLLVGLGIGATPMISIVKDIVNNMKAIE--- 555 (614)
Q Consensus 481 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~-~~~~~-~~~~vvlIagG~GItp~~s~l~~l~~~~~~~~--- 555 (614)
++ + |+++.+.||+|.+ ..+.. ..+++||||||+||||++||++++++.....+
T Consensus 168 l~-------~---------------Gd~v~l~~p~gg~~~~~~~~~~~~~vlIAgGtGiaP~~s~l~~~~~~~~~~~v~l 225 (312)
T PRK05713 168 LQ-------V---------------GDLLRLGELRGGALHYDPDWQERPLWLLAAGTGLAPLWGILREALRQGHQGPIRL 225 (312)
T ss_pred CC-------C---------------CCEEEEccCCCCceEecCCCCCCcEEEEecCcChhHHHHHHHHHHhcCCCCcEEE
Confidence 31 3 5899999999853 22222 45789999999999999999999987643222
Q ss_pred --------hh-HHHHHhcccccCCCE
Q 007179 556 --------EE-EENDLENGRDTGVNT 572 (614)
Q Consensus 556 --------~~-~~~~l~~l~~~~~~~ 572 (614)
+. +.++|+++++++++.
T Consensus 226 ~~g~r~~~d~~~~~el~~l~~~~~~~ 251 (312)
T PRK05713 226 LHLARDSAGHYLAEPLAALAGRHPQL 251 (312)
T ss_pred EEEcCchHHhhhHHHHHHHHHHCCCc
Confidence 22 456898887766663
No 61
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=99.76 E-value=1.3e-17 Score=177.82 Aligned_cols=167 Identities=15% Similarity=0.182 Sum_probs=121.8
Q ss_pred eeEEEEEEEEec-----CCEEEEEEeCCC-CcccCCCCEEEEEeCCC----CCCccccceeccCCCC-----CcEEEEEE
Q 007179 404 KAVSIQKVAVYP-----GNVLALHMSKPD-RFRYKSGQYMFVNCAAV----SPFEWHPFSITSAPDD-----DYLSVHIR 468 (614)
Q Consensus 404 ~~~~v~~~~~~~-----~~v~~l~l~~~~-~~~~~pGQ~v~l~~p~~----~~~~~hpfTias~p~~-----~~l~l~ir 468 (614)
..++|+.++.++ +++.+++|+.+. .+.|+||||+.|.+|+. .....|||||+|+|++ +.++|+||
T Consensus 143 ~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l~~pg~~~~g~~~~~R~YSIas~~~~~~~~~~~l~l~Vk 222 (411)
T TIGR03224 143 ITATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGILPPGTDASGKPHYARMYSVASPRNGERPGYNNLALTVK 222 (411)
T ss_pred eEEEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEEecCCcCcCCCcCcceeeeecCCCCccCCCCCEEEEEEE
Confidence 457888888884 499999999876 68899999999998853 2246799999998742 47999999
Q ss_pred ec----------CccchHHHHHhhhcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCCCC-CCCCCCeEEEEEeCcCH
Q 007179 469 TL----------GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQ-DYKEYEVVLLVGLGIGA 537 (614)
Q Consensus 469 ~~----------g~~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~-~~~~~~~vvlIagG~GI 537 (614)
+. |..|+.|.+ ++ + |++|.|.||+|.++. +.....++|||||||||
T Consensus 223 ~v~~~~~g~~~~G~~S~~L~~-lk-------~---------------Gd~v~v~GP~G~~f~lp~~~~~~lllIagGtGI 279 (411)
T TIGR03224 223 RVTTDHQGNAVRGVASNYLCD-LK-------K---------------GDKVQVIGPFGSTFLMPNHPESSIMMICTGTGS 279 (411)
T ss_pred EEEecCCCCcCcccchhHHhc-CC-------C---------------cCEEEEEeccCCcccCCCCCCCCEEEEecccCc
Confidence 86 557877765 32 2 589999999998543 22234689999999999
Q ss_pred HHHHHHHHHHHHhhc---cc-----------ch-hHHHHHhcccccCCCEEEEEecCCCCCCcccccccccCChHHHH
Q 007179 538 TPMISIVKDIVNNMK---AI-----------EE-EEENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSI 600 (614)
Q Consensus 538 tp~~s~l~~l~~~~~---~~-----------~~-~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~w~g~~G~i~~~~~~ 600 (614)
||++|+++++..... .. ++ .+.++|+++.+..++..+ +.+++.+ +.+|+|++.+.+
T Consensus 280 AP~~s~l~~~~~~~~~~~~~~v~L~~G~Rt~~dl~y~~eL~~l~~~~~~~~~-~~sr~~~------~~~g~V~d~l~~ 350 (411)
T TIGR03224 280 APMRAMTERRRRRRDHGEGGKLMLFFGARTKEELPYFGPLQKLPKDFIDINF-AFSRTPE------QPKRYVQDAIRE 350 (411)
T ss_pred HHHHHHHHHHHHHhhcCCCCCEEEEEecCccccchHHHHHHHHHhcCceEEE-EeccCCc------cCcccHhhHHHH
Confidence 999999999875311 11 11 255688888665555333 4444332 357888886554
No 62
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=99.75 E-value=2.2e-17 Score=166.56 Aligned_cols=153 Identities=17% Similarity=0.209 Sum_probs=113.3
Q ss_pred CCEEEEEEeCC--CCcccCCCCEEEEEeCCCCCCccccceeccCCCC--CcEEEEEEec-----------CccchHHHHH
Q 007179 416 GNVLALHMSKP--DRFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD--DYLSVHIRTL-----------GDWTRQLRTV 480 (614)
Q Consensus 416 ~~v~~l~l~~~--~~~~~~pGQ~v~l~~p~~~~~~~hpfTias~p~~--~~l~l~ir~~-----------g~~T~~L~~~ 480 (614)
.++.+++|+.| ....|+||||+.|.+|+ ....|||||+|.|++ +.++|+||.. |..|+.|.+
T Consensus 15 ~~v~~l~l~~~~~~~~~~~pGQ~v~l~~~~--~~~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~~- 91 (267)
T cd06182 15 RSTRHLEFDLSGNSVLKYQPGDHLGVIPPN--PLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAG- 91 (267)
T ss_pred CceEEEEEecCCCCcCccCCCCEEEEecCC--CCCCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchhHHHhh-
Confidence 47999999988 57889999999999875 346899999999864 7899999987 667777754
Q ss_pred hhhcCCCCCCCCCccccccCCCCCCCCEEEEeCccC-CCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHh----h----
Q 007179 481 FSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYG-APAQDYKEYEVVLLVGLGIGATPMISIVKDIVNN----M---- 551 (614)
Q Consensus 481 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG-~~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~----~---- 551 (614)
++ + ++.+.+.||+| .+..+....+++|||||||||||++|++++++.. .
T Consensus 92 lk-------~---------------Gd~v~v~~p~G~~f~l~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~~~~~~~ 149 (267)
T cd06182 92 LQ-------L---------------GAKVTVFIRPAPSFRLPKDPTTPIIMVGPGTGIAPFRGFLQERAALRANGKARGP 149 (267)
T ss_pred CC-------C---------------CCEEEEEEecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhccccCCC
Confidence 31 2 48999999999 7765444467899999999999999999999873 1
Q ss_pred -------ccc-ch-hHHHHHhcccccCCCE-EEEEecCCCCCCcccccccccCChHHH
Q 007179 552 -------KAI-EE-EEENDLENGRDTGVNT-TIIIIDNNYEPFFFWTQKKGPIQDKKS 599 (614)
Q Consensus 552 -------~~~-~~-~~~~~l~~l~~~~~~~-~v~~~~~~~~~~~~w~g~~G~i~~~~~ 599 (614)
++. .+ .+.++|+++.+.+.+. .+++.+++.. +..|+|++...
T Consensus 150 v~l~~g~r~~~~d~~~~del~~~~~~~~~~~~~~~~S~~~~------~~~~~v~~~l~ 201 (267)
T cd06182 150 AWLFFGCRNFASDYLYREELQEALKDGALTRLDVAFSREQA------EPKVYVQDKLK 201 (267)
T ss_pred EEEEEeCCCCcccccHHHHHHHHHhCCCcceEEEEEccCCC------CCceehHHHHH
Confidence 112 22 3456888887765553 3344554322 24577766543
No 63
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=99.74 E-value=8.1e-17 Score=164.42 Aligned_cols=152 Identities=16% Similarity=0.199 Sum_probs=114.6
Q ss_pred cceeEEEEEEEEec----CCEEEEEEeCCC-------CcccCCCCEEEEEeCCCCCCccccceeccCCCCCcEEEEEEe-
Q 007179 402 SIKAVSIQKVAVYP----GNVLALHMSKPD-------RFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDDDYLSVHIRT- 469 (614)
Q Consensus 402 ~~~~~~v~~~~~~~----~~v~~l~l~~~~-------~~~~~pGQ~v~l~~p~~~~~~~hpfTias~p~~~~l~l~ir~- 469 (614)
.+.++++++.+.++ +++..++|+.+. ...|+||||+.|..++.. ..|||||+|.|+++.++|+||.
T Consensus 44 ~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~pGQ~v~v~~~g~~--~~R~YSias~p~~g~l~l~Vk~~ 121 (289)
T cd06201 44 RTKALELVERKDYGAAVQAPTAILRFKPAKRKLSGKGLPSFEAGDLLGILPPGSD--VPRFYSLASSSSDGFLEICVRKH 121 (289)
T ss_pred CccceEEEeeeecCCCCCCccEEEEEeCCCcccccCCCCCcCccCEEEEecCCCC--CCceEecCCCCCCCeEEEEEEeC
Confidence 45678899999988 599999999876 467999999999866433 5799999999988899999998
Q ss_pred -cCccchHHHHHhhhcCCCCCCCCCccccccCCCCCCCCEEEEe-CccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHH
Q 007179 470 -LGDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLID-GPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDI 547 (614)
Q Consensus 470 -~g~~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~-GPyG~~~~~~~~~~~vvlIagG~GItp~~s~l~~l 547 (614)
.|..|+.|.+ ++ + |+.+.+. +|+|.+... ...+++|||||||||||++||+++.
T Consensus 122 ~~G~~S~~L~~-l~-------~---------------Gd~v~v~~~~~g~F~~~-~~~~~lvlIAgGtGIaP~~s~l~~~ 177 (289)
T cd06201 122 PGGLCSGYLHG-LK-------P---------------GDTIKAFIRPNPSFRPA-KGAAPVILIGAGTGIAPLAGFIRAN 177 (289)
T ss_pred CCccchhhHhh-CC-------C---------------cCEEEEEeccCCCccCC-CCCCCEEEEecCcCHHHHHHHHHhh
Confidence 4678888875 32 2 4788887 478887643 4457899999999999999999986
Q ss_pred HHh--------hcccc-h-hHHHHHhcccccCCCEEE-EEecC
Q 007179 548 VNN--------MKAIE-E-EEENDLENGRDTGVNTTI-IIIDN 579 (614)
Q Consensus 548 ~~~--------~~~~~-~-~~~~~l~~l~~~~~~~~v-~~~~~ 579 (614)
... .++.. + .+.++|+++.+.+.+..+ .+.++
T Consensus 178 ~~~~~v~L~~g~r~~~~d~~~~~eL~~l~~~~~~~~~~~~~s~ 220 (289)
T cd06201 178 AARRPMHLYWGGRDPASDFLYEDELDQYLADGRLTQLHTAFSR 220 (289)
T ss_pred hccCCEEEEEEecCcccchHHHHHHHHHHHcCCCceEEEEECC
Confidence 322 12221 2 456799988776665333 34443
No 64
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=99.73 E-value=6e-17 Score=158.18 Aligned_cols=131 Identities=16% Similarity=0.228 Sum_probs=102.8
Q ss_pred EEEEecCCEEEEEEeCCCC---cccCCCCEEEEEeCCCCCCccccceeccCCCC-CcEEEEEEecCc---cchHHHHHhh
Q 007179 410 KVAVYPGNVLALHMSKPDR---FRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRTLGD---WTRQLRTVFS 482 (614)
Q Consensus 410 ~~~~~~~~v~~l~l~~~~~---~~~~pGQ~v~l~~p~~~~~~~hpfTias~p~~-~~l~l~ir~~g~---~T~~L~~~~~ 482 (614)
+++.+++++++++++.+.. ..|+||||+.|++|.. ..|||||+|.|.+ +.++|+||..++ .|..|.+.++
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~~~l~~~~~---~~r~ySi~s~~~~~~~l~~~v~~~~~g~~~s~~l~~~~~ 78 (211)
T cd06185 2 RIRDEAPDIRSFELEAPDGAPLPAFEPGAHIDVHLPNG---LVRQYSLCGDPADRDRYRIAVLREPASRGGSRYMHELLR 78 (211)
T ss_pred ceEEcCCCeEEEEEEeCCCCcCCCCCCCceEEEEcCCC---CceeeeccCCCCCCCEEEEEEEeccCCCchHHHHHhcCC
Confidence 4678899999999998875 3899999999999862 6799999999865 899999998753 5766665432
Q ss_pred hcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhhcc---------
Q 007179 483 EVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKA--------- 553 (614)
Q Consensus 483 ~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~~~--------- 553 (614)
+ ++++.|.||+|.+... ...++++|||||+||||++|+++++.+..++
T Consensus 79 -------~---------------Gd~v~i~gP~g~f~~~-~~~~~~v~ia~GtGiap~~~il~~~~~~~~~v~l~~~~r~ 135 (211)
T cd06185 79 -------V---------------GDELEVSAPRNLFPLD-EAARRHLLIAGGIGITPILSMARALAARGADFELHYAGRS 135 (211)
T ss_pred -------C---------------CCEEEEcCCccCCcCC-CCCCcEEEEeccchHhHHHHHHHHHHhCCCCEEEEEEeCC
Confidence 2 4899999999988653 2457899999999999999999999864321
Q ss_pred cchh-HHHHHhccc
Q 007179 554 IEEE-EENDLENGR 566 (614)
Q Consensus 554 ~~~~-~~~~l~~l~ 566 (614)
.++. +.++|+++.
T Consensus 136 ~~~~~~~~~l~~~~ 149 (211)
T cd06185 136 REDAAFLDELAALP 149 (211)
T ss_pred CcchhHHHHHhhhc
Confidence 1222 446787775
No 65
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.72 E-value=8.3e-17 Score=185.55 Aligned_cols=162 Identities=23% Similarity=0.383 Sum_probs=124.7
Q ss_pred EEEEEEEEecCCEEEEEEeCCC-CcccCCCCEEEEEeCCCCCCccccceeccCCC-CCcEEEEEEecCccchHHHHHhhh
Q 007179 406 VSIQKVAVYPGNVLALHMSKPD-RFRYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRTLGDWTRQLRTVFSE 483 (614)
Q Consensus 406 ~~v~~~~~~~~~v~~l~l~~~~-~~~~~pGQ~v~l~~p~~~~~~~hpfTias~p~-~~~l~l~ir~~g~~T~~L~~~~~~ 483 (614)
++|++++.+++++..++|+.|. ...++||||+.|+++..+ +.|||||+|.|. ++.++|+||..|..|..|.+ ++
T Consensus 2 ~~I~~~~~~t~~v~~l~l~~p~~~~~~~pGQFv~l~~~~~~--~~rp~Si~~~~~~~g~i~~~vk~vG~~T~~L~~-l~- 77 (752)
T PRK12778 2 NKIVEKEIFSEKVFLLEIEAPLIAKSRKPGQFVIVRVGEKG--ERIPLTIADADPEKGTITLVIQEVGLSTTKLCE-LN- 77 (752)
T ss_pred CEEEEEEEEcCCEEEEEEeCCchhccCCCCeeEEEEeCCCC--CeeEEEeeeeCCCCCEEEEEEEEcCchHHHHhc-CC-
Confidence 3678889999999999999775 357999999999998654 578999999874 67899999999999998874 21
Q ss_pred cCCCCCCCCCccccccCCCCCCCCEE-EEeCccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhhcc---------
Q 007179 484 VCRPPPNGISGLLRAEGHNNPDFPRV-LIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKA--------- 553 (614)
Q Consensus 484 ~~~~~~~g~~~~~~~~~~~~~~~~~v-~i~GPyG~~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~~~--------- 553 (614)
+ ++.+ .|.||||.+... ...++++|||||+||||++++++++.+...+
T Consensus 78 ------~---------------Gd~v~~v~GP~G~~~~~-~~~~~~llvaGG~GiaPl~~l~~~l~~~~~~v~l~~g~r~ 135 (752)
T PRK12778 78 ------E---------------GDYITDVVGPLGNPSEI-ENYGTVVCAGGGVGVAPMLPIVKALKAAGNRVITILGGRS 135 (752)
T ss_pred ------C---------------CCEeCeEeCCCCCCccC-CCCCeEEEEECCEeHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 3 4889 799999998753 3457999999999999999999999875432
Q ss_pred cchh-HHHHHhcccccCCCEEEEEecCCCCCCcccccccccCChHHHHHhh
Q 007179 554 IEEE-EENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSILLL 603 (614)
Q Consensus 554 ~~~~-~~~~l~~l~~~~~~~~v~~~~~~~~~~~~w~g~~G~i~~~~~~~~~ 603 (614)
..+. +.++|+++... ++++.+ ++ |.|.+|++++.+.+.+.
T Consensus 136 ~~~l~~~~el~~~~~~-----~~~~t~--dg---~~g~~G~v~~~l~~~~~ 176 (752)
T PRK12778 136 KELIILEDEMRESSDE-----VIIMTD--DG---SYGRKGLVTDGLEEVIK 176 (752)
T ss_pred HHHhhhHHHHHhhcCe-----EEEEEC--CC---CCCCcccHHHHHHHHhh
Confidence 1222 34577766321 223332 33 78999999987766654
No 66
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.69 E-value=4.4e-16 Score=181.03 Aligned_cols=172 Identities=14% Similarity=0.143 Sum_probs=126.7
Q ss_pred ceeEEEEEEEEecCCEEEEEEeCCCC-cccCCCCEEEEEeCCCCCCccccceeccCCC-CCcEEEEEEecCccchHHHHH
Q 007179 403 IKAVSIQKVAVYPGNVLALHMSKPDR-FRYKSGQYMFVNCAAVSPFEWHPFSITSAPD-DDYLSVHIRTLGDWTRQLRTV 480 (614)
Q Consensus 403 ~~~~~v~~~~~~~~~v~~l~l~~~~~-~~~~pGQ~v~l~~p~~~~~~~hpfTias~p~-~~~l~l~ir~~g~~T~~L~~~ 480 (614)
+..++|.+++.++++++.++++.|.. ..++||||+.|.++..+ +.|||||++.|. +++++|+||..|..|..|.+
T Consensus 648 ~~~~~I~~~~~lt~dv~~~~l~~p~~~~~~~PGQFv~L~~~~~g--e~rP~SIas~~~~~g~i~l~Vk~vG~~T~~L~~- 724 (944)
T PRK12779 648 QIPQTIVGKVQLAGGIVEFTVRAPMVARSAQAGQFVRVLPWEKG--ELIPLTLADWDAEKGTIDLVVQGMGTSSLEINR- 724 (944)
T ss_pred ceEEEEEEEEEecCCEEEEEEeCCCccccCCCCceEEEEeCCCC--CEEeEEccCCCCCCCEEEEEEEeeccHHHHHhc-
Confidence 56789999999999999999988763 47999999999986554 569999999864 67899999999887765643
Q ss_pred hhhcCCCCCCCCCccccccCCCCCCCCEEE-EeCccCCCCCCC--CCCCeEEEEEeCcCHHHHHHHHHHHHHhhcc----
Q 007179 481 FSEVCRPPPNGISGLLRAEGHNNPDFPRVL-IDGPYGAPAQDY--KEYEVVLLVGLGIGATPMISIVKDIVNNMKA---- 553 (614)
Q Consensus 481 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~-i~GPyG~~~~~~--~~~~~vvlIagG~GItp~~s~l~~l~~~~~~---- 553 (614)
++ + ++.+. |.||+|.+.... ...+++||||||+||||++|+++++.+.+.+
T Consensus 725 lk-------~---------------Gd~l~~I~GPlG~~f~~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~~g~~V~li 782 (944)
T PRK12779 725 MA-------I---------------GDAFSGIAGPLGRASELHRYEGNQTVVFCAGGVGLPPVYPIMRAHLRLGNHVTLI 782 (944)
T ss_pred CC-------C---------------cCEEeeeecCCCCCcCCccccCCCcEEEEEccEeHHHHHHHHHHHHHCCCCEEEE
Confidence 21 2 48885 999999985311 2236899999999999999999998875421
Q ss_pred -----cchhHH----HHHhcccccCCC-EEEEEecCCCCCCcccccccccCChHHHHHhhc
Q 007179 554 -----IEEEEE----NDLENGRDTGVN-TTIIIIDNNYEPFFFWTQKKGPIQDKKSILLLG 604 (614)
Q Consensus 554 -----~~~~~~----~~l~~l~~~~~~-~~v~~~~~~~~~~~~w~g~~G~i~~~~~~~~~~ 604 (614)
.++.++ ++++++++...+ ..+++++++ + |.|.+|+|++.+.+.+.+
T Consensus 783 ~G~Rs~edl~~~del~~L~~la~~~~~~~~v~~ttdd--g---s~G~~G~Vt~~l~~ll~~ 838 (944)
T PRK12779 783 SGFRAKEFLFWTGDDERVGKLKAEFGDQLDVIYTTND--G---SFGVKGFVTGPLEEMLKA 838 (944)
T ss_pred EEeCCHHHhhhHHHHHHHHHHHHHcCCCeEEEEEecC--C---CCCCccccChHHHHHHHh
Confidence 222332 235556555554 344445433 3 678999999876665543
No 67
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.66 E-value=1.2e-15 Score=179.04 Aligned_cols=164 Identities=18% Similarity=0.274 Sum_probs=124.7
Q ss_pred EEEEEEEEecCCEEEEEEeCCC-CcccCCCCEEEEEeCCCCCCccccceeccCC-CCCcEEEEEEecCccchHHHHHhhh
Q 007179 406 VSIQKVAVYPGNVLALHMSKPD-RFRYKSGQYMFVNCAAVSPFEWHPFSITSAP-DDDYLSVHIRTLGDWTRQLRTVFSE 483 (614)
Q Consensus 406 ~~v~~~~~~~~~v~~l~l~~~~-~~~~~pGQ~v~l~~p~~~~~~~hpfTias~p-~~~~l~l~ir~~g~~T~~L~~~~~~ 483 (614)
.+|++.+.+++++..+++..|. ...++|||||.|+++..+ +.+||||++.+ +++++++.++..|..|+.|.+.++
T Consensus 2 ~~I~~~~~l~~~~~~l~l~ap~~a~~~~PGQFV~l~~~~~~--errplSIa~~~~~~g~i~l~vk~vG~~T~~L~~~lk- 78 (1006)
T PRK12775 2 YSIVRREAFSDTTFLWEVEAPDVAASAEPGHFVMLRLYEGA--ERIPLTVADFDRKKGTITMVVQALGKTTREMMTKFK- 78 (1006)
T ss_pred cEEEEEEEecCCEEEEEEecCCcccCCCCCeeEEEEeCCCC--eeEEEEecCcCCCCCEEEEEEEecCcHHHHHHhcCC-
Confidence 3678889999999999999886 467999999999997644 57999999876 467899999999999998865442
Q ss_pred cCCCCCCCCCccccccCCCCCCCCEE-EEeCccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhhccc--------
Q 007179 484 VCRPPPNGISGLLRAEGHNNPDFPRV-LIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAI-------- 554 (614)
Q Consensus 484 ~~~~~~~g~~~~~~~~~~~~~~~~~v-~i~GPyG~~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~~~~-------- 554 (614)
+ |+.+ .+.||+|.++. ....+++||||||+||||++|+++++.+.+.+.
T Consensus 79 ------~---------------Gd~l~~v~GPlG~~~~-~~~~~~vllVaGGiGIAPl~s~~r~l~~~g~~v~li~g~R~ 136 (1006)
T PRK12775 79 ------A---------------GDTFEDFVGPLGLPQH-IDKAGHVVLVGGGLGVAPVYPQLRAFKEAGARTTGIIGFRN 136 (1006)
T ss_pred ------C---------------CCEEeeeecCCCCCCC-CCCCCeEEEEEEhHHHHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 2 4777 79999999864 344579999999999999999999987764321
Q ss_pred -chh-HHHHHhcccccCCCEEEEEecCCCCCCcccccccccCChHHHHHhhc
Q 007179 555 -EEE-EENDLENGRDTGVNTTIIIIDNNYEPFFFWTQKKGPIQDKKSILLLG 604 (614)
Q Consensus 555 -~~~-~~~~l~~l~~~~~~~~v~~~~~~~~~~~~w~g~~G~i~~~~~~~~~~ 604 (614)
... +.++++.+.. .+++++++ + |.|.+|+|++.+.+++..
T Consensus 137 ~~~l~~~del~~~~~-----~~~v~tdd--g---s~G~~G~vt~~l~~~l~~ 178 (1006)
T PRK12775 137 KDLVFWEDKFGKYCD-----DLIVCTDD--G---SYGKPGFVTAALKEVCEK 178 (1006)
T ss_pred hHHcccHHHHHhhcC-----cEEEEECC--C---CCCCCCChHHHHHHHhcc
Confidence 112 3456665421 12333332 3 679999999987776644
No 68
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.65 E-value=1.9e-15 Score=180.69 Aligned_cols=174 Identities=17% Similarity=0.199 Sum_probs=130.0
Q ss_pred ccceeEEEEEEE---EecCCEEEEEEeCCCC---cccCCCCEEEEEeCCCCCCccccceeccCCCC-CcEEEEEEec-Cc
Q 007179 401 SSIKAVSIQKVA---VYPGNVLALHMSKPDR---FRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRTL-GD 472 (614)
Q Consensus 401 ~~~~~~~v~~~~---~~~~~v~~l~l~~~~~---~~~~pGQ~v~l~~p~~~~~~~hpfTias~p~~-~~l~l~ir~~-g~ 472 (614)
..|.+++|.+++ ..++++..++|..|.. +.++||||+.|+++..+.-..|+||++|.|++ +.++|.||.. |.
T Consensus 912 ~~w~~~~l~~~~~~~~~~~~~~~~~f~lp~~~~~~~~~pGQfv~l~~~~~g~~~~R~YS~~S~p~~~~~i~l~Vr~~~G~ 991 (1167)
T PTZ00306 912 DKWTTVVVREVREGGQFGTGSRVLRFNLPGALQRSGLTLGQFIAIRGDWDGQQLIGYYSPITLPDDLGVISILARGDKGT 991 (1167)
T ss_pred CceEEEEEEEEeccccccCCeEEEEEECCCcccccCCCCCeEEEEEeeeCCeEEEEEeccCCCCCCCCeEEEEEEcCCCh
Confidence 356788888886 4588999999988753 57999999999987544445799999999964 6799999874 66
Q ss_pred cchHHHHHhhhcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCC----------CCCCCCCCeEEEEEeCcCHHHHHH
Q 007179 473 WTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAP----------AQDYKEYEVVLLVGLGIGATPMIS 542 (614)
Q Consensus 473 ~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~----------~~~~~~~~~vvlIagG~GItp~~s 542 (614)
+|..|.+ ++ + ++++.|.||+|.. ..+....+++||||||+||||++|
T Consensus 992 ~S~~L~~-l~-------~---------------Gd~v~v~gp~G~~~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~s 1048 (1167)
T PTZ00306 992 LKEWISA-LR-------P---------------GDSVEMKACGGLRIERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQ 1048 (1167)
T ss_pred hHHHHhh-CC-------C---------------CCEEEEeCCcCccccccCccceeeeccCCCceEEEEECCccHhHHHH
Confidence 8887742 31 3 5899999998842 112234578999999999999999
Q ss_pred HHHHHHHhhc---c-----------cch-hHHHHHhcccccCCC--EEEEEecCCCCCCcccccccccCChHHHH
Q 007179 543 IVKDIVNNMK---A-----------IEE-EEENDLENGRDTGVN--TTIIIIDNNYEPFFFWTQKKGPIQDKKSI 600 (614)
Q Consensus 543 ~l~~l~~~~~---~-----------~~~-~~~~~l~~l~~~~~~--~~v~~~~~~~~~~~~w~g~~G~i~~~~~~ 600 (614)
|+++++++.. . .++ .+.++|+++.+.+++ ...++++++.++ |.+..|+|++..++
T Consensus 1049 ml~~~l~~~~~~~~~~i~Llyg~r~~~dl~~~~eL~~l~~~~~~~f~~~~~ls~~~~~---w~~~~G~i~~~~l~ 1120 (1167)
T PTZ00306 1049 IIRAALKKPYVDSIESIRLIYAAEDVSELTYRELLESYRKENPGKFKCHFVLNNPPEG---WTDGVGFVDRALLQ 1120 (1167)
T ss_pred HHHHHHhCcccCCCceEEEEEEeCCHHHhhHHHHHHHHHHHCCCCEEEEEEECCCCcc---cCCCCCCCCHHHHH
Confidence 9999987531 1 112 355699988776664 344566766666 99999999987554
No 69
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.62 E-value=1.9e-15 Score=141.32 Aligned_cols=119 Identities=19% Similarity=0.252 Sum_probs=103.4
Q ss_pred CcchHHHHHHHHHHHhcccCCCC-CcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhc--c
Q 007179 2 NKDSKDFAVELFDALTRRRNIQG-DTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSAS--A 78 (614)
Q Consensus 2 ~~~~~~~~~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~~~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~--~ 78 (614)
++++..+++.+|+.+| +|+ |.|+|.||+.+++.+..+..+++++.+|++||.|+||+|+++|+..+++.... .
T Consensus 59 ~gd~~~y~~~vF~~fD----~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~ 134 (193)
T KOG0044|consen 59 DGDASKYAELVFRTFD----KNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTG 134 (193)
T ss_pred CCCHHHHHHHHHHHhc----ccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcc
Confidence 3567889999999999 999 99999999999999999999999999999999999999999999999984222 1
Q ss_pred -CcccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhCCcccc
Q 007179 79 -NKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQSV 124 (614)
Q Consensus 79 -~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~~~~~~ 124 (614)
...+..++..++.++.+|+++|.|+||.+|++||....+..|..+.
T Consensus 135 ~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d~~i~~ 181 (193)
T KOG0044|consen 135 SKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKADPSILR 181 (193)
T ss_pred cccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhhCHHHHH
Confidence 1112335567899999999999999999999999999999887753
No 70
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.62 E-value=3.7e-15 Score=147.93 Aligned_cols=119 Identities=13% Similarity=0.122 Sum_probs=97.2
Q ss_pred EEEEEEecCCEEEEEEeCCCC---cccCCCCEEEEEeCCCC-------------------CCccccceeccCC-CCCcEE
Q 007179 408 IQKVAVYPGNVLALHMSKPDR---FRYKSGQYMFVNCAAVS-------------------PFEWHPFSITSAP-DDDYLS 464 (614)
Q Consensus 408 v~~~~~~~~~v~~l~l~~~~~---~~~~pGQ~v~l~~p~~~-------------------~~~~hpfTias~p-~~~~l~ 464 (614)
|++++.+++++++|+|+.+.. ..++||||+.|.++..+ ....|+|||++.+ ++++++
T Consensus 1 V~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~~~~~~l~ 80 (235)
T cd06193 1 VVRVERLTPHMRRITLGGPDLAGFPSDGPDQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDPEAGELD 80 (235)
T ss_pred CceeEecCCCEEEEEEecCccccCCCCCCCceEEEEecCCCCCCCCCccccccccCCcccCCcCcccceeEEcCCCCEEE
Confidence 457889999999999998764 57899999999998643 4678999999986 578899
Q ss_pred EEEEec---CccchHHHHHhhhcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCCCCCCCCCCeEEEEEeCcCHHHHH
Q 007179 465 VHIRTL---GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMI 541 (614)
Q Consensus 465 l~ir~~---g~~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~~ 541 (614)
|.|+.. |..|+.+.+ ++ + ++++.+.||+|.+... ...+++||||||+||||++
T Consensus 81 ~~v~~~~~~G~~s~~l~~-l~-------~---------------Gd~v~v~gP~G~~~~~-~~~~~~vlia~GtGi~p~~ 136 (235)
T cd06193 81 IDFVLHGDEGPASRWAAS-AQ-------P---------------GDTLGIAGPGGSFLPP-PDADWYLLAGDETALPAIA 136 (235)
T ss_pred EEEEeCCCCCchHHHHhh-CC-------C---------------CCEEEEECCCCCCCCC-CCcceEEEEeccchHHHHH
Confidence 999877 446666642 31 2 5899999999998753 3567899999999999999
Q ss_pred HHHHHHHHh
Q 007179 542 SIVKDIVNN 550 (614)
Q Consensus 542 s~l~~l~~~ 550 (614)
||++++...
T Consensus 137 ~il~~~~~~ 145 (235)
T cd06193 137 AILEELPAD 145 (235)
T ss_pred HHHHhCCCC
Confidence 999988654
No 71
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.58 E-value=1.5e-14 Score=135.45 Aligned_cols=111 Identities=21% Similarity=0.329 Sum_probs=97.2
Q ss_pred HHHHHHHHHhcccCCCC-Cc-ccHHHHHHHHHHhcCCCh-HHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCcccch
Q 007179 8 FAVELFDALTRRRNIQG-DT-ITKDQLREFWDQISDQSF-DSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNI 84 (614)
Q Consensus 8 ~~~~~f~~~D~~~~~~~-G~-I~~~ef~~~l~~~~~~~~-~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~~~ 84 (614)
+.+++++.+| .++ |. |+|+||+..++.+..... ++|++++|++||.|+||+|+++|+..++.....++... .
T Consensus 67 ~~~rI~~~f~----~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~-~ 141 (187)
T KOG0034|consen 67 LADRIIDRFD----TDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDM-S 141 (187)
T ss_pred HHHHHHHHHh----ccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcc-h
Confidence 4678999999 877 66 999999999999877654 55999999999999999999999999998655544333 5
Q ss_pred hHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhCCccc
Q 007179 85 QKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQS 123 (614)
Q Consensus 85 ~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~~~~~ 123 (614)
+++.++.++.+|+++|.|+||.||++||.+++.+.|...
T Consensus 142 ~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~P~~~ 180 (187)
T KOG0034|consen 142 DEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQPDLL 180 (187)
T ss_pred HHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCccHH
Confidence 788999999999999999999999999999999998774
No 72
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.53 E-value=5.4e-14 Score=127.05 Aligned_cols=103 Identities=23% Similarity=0.397 Sum_probs=89.1
Q ss_pred hHHHHHHHHHHHhcccCCCC-CcccHHHHHHHHHHh-cCCChHHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCccc
Q 007179 5 SKDFAVELFDALTRRRNIQG-DTITKDQLREFWDQI-SDQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLS 82 (614)
Q Consensus 5 ~~~~~~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~-~~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~ 82 (614)
+++++.++++.+| . + +.|++++|+.+|+.. ...+++++++.+|+.||+|+||+|+.+|++.+++ .++
T Consensus 54 s~~ei~~l~~~~d----~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~------~lg 122 (160)
T COG5126 54 SEAEINKLFEEID----A-GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLK------SLG 122 (160)
T ss_pred cHHHHHHHHHhcc----C-CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHH------hhc
Confidence 4566788999888 7 6 999999999999764 4667899999999999999999999999999996 233
Q ss_pred chhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhCC
Q 007179 83 NIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAP 120 (614)
Q Consensus 83 ~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~~ 120 (614)
++..+++++++++.+|.|+||.|+|+||.+++...+
T Consensus 123 --e~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~~~ 158 (160)
T COG5126 123 --ERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKDSP 158 (160)
T ss_pred --ccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhccC
Confidence 455688999999999999999999999999887655
No 73
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=99.45 E-value=1.5e-13 Score=122.33 Aligned_cols=118 Identities=25% Similarity=0.426 Sum_probs=87.0
Q ss_pred cchhhHHHHHhhhhH-hhhccccccccccccCccchhHHHHHHHHHHHHHHHHHHhhhhccccceecccccccCCcCCcc
Q 007179 212 KFNMALILLPVCRNT-ITWLRNKTKLSGVVPFDDNLNFHKVIAVGISIGVGIHAISHLACDFPRLINASEEKYEPMEPYF 290 (614)
Q Consensus 212 ~~~~~li~l~~~Rn~-l~~l~~~~~l~~~~~~d~~~~~Hr~~g~~~~~~~~iH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (614)
..|+++++++++||+ +..++ ++|+|+.+.+|||+|+++++++++|+++++.... .. . ..+
T Consensus 6 ~~~l~~~~~l~~R~~~l~~~~-------~~~~~~~~~~Hr~lg~~~~~~~~~H~~~~~~~~~-~~---~--~~~------ 66 (125)
T PF01794_consen 6 FALLPLVFLLGLRNSPLARLT-------GISFDRLLRFHRWLGRLAFFLALLHGVLYLINWL-RF---G--GWD------ 66 (125)
T ss_pred HHHHHHHHHHHHhhhHHHHHh-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---h--hhc------
Confidence 457888888899986 44443 6899999999999999999999999999984211 10 0 000
Q ss_pred CCCCccccccccccchHHHHHHHHHHHHHHHhcchhHhhccCCCCCccccccccchhHHHHHHHHHHHHHH
Q 007179 291 GDQPKNYWHFVKSVEGVTGIVMVVLMAIAFTLATPWFRRNKLNLPKPLKKLTGFNAFWYSHHLFVIVYTLL 361 (614)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~s~~~iRr~~~~~~~~~~~~~~ye~F~~~H~l~~~~~v~~ 361 (614)
..........+....+|+++++++.++.++|.+++||++ .||.|+++|++++++++++
T Consensus 67 --~~~~~~~~~~~~~~~~G~~a~~~l~~l~~tS~~~~R~r~-----------~ye~f~~~H~~~~~~~~l~ 124 (125)
T PF01794_consen 67 --WQEWFNAWLTGPYNLTGIIALLLLLILAVTSFPWIRRRR-----------NYEIFYYLHILFYIAFLLA 124 (125)
T ss_pred --hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------cHHHHHHHHHHHHHHHHHH
Confidence 000011223344567999999999999999999999442 7999999999998877653
No 74
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.42 E-value=7.3e-13 Score=126.97 Aligned_cols=179 Identities=15% Similarity=0.224 Sum_probs=120.2
Q ss_pred eEEEEEEEEecCCEEEEEEeCCC--CcccCCCCEEEEEeCCCC--------------CC---------------ccccce
Q 007179 405 AVSIQKVAVYPGNVLALHMSKPD--RFRYKSGQYMFVNCAAVS--------------PF---------------EWHPFS 453 (614)
Q Consensus 405 ~~~v~~~~~~~~~v~~l~l~~~~--~~~~~pGQ~v~l~~p~~~--------------~~---------------~~hpfT 453 (614)
.++|.+..+.+--+.++++..|+ ...|+||-|+.+.+|.-. .| ..+.||
T Consensus 136 ectViSNdN~ATFIKEL~laip~g~~vpFraGGyiQie~pph~v~y~Dfdi~~eY~~DWdkf~lf~~vs~v~e~~~rAYS 215 (410)
T COG2871 136 ECTVISNDNKATFIKELKLAIPEGEEVPFRAGGYIQIEAPPHTVNYKDFDIPPEYHEDWDKFNLFRYVSKVDEPIIRAYS 215 (410)
T ss_pred eEEEEeCCchhhhhhhheeeCCCCCccccCCCceEEEecCCccccccccCCChhHhcchhhhchheeeccccHHHHHHhh
Confidence 44555544444445667777665 578999999999998420 01 237899
Q ss_pred eccCCCC-CcEEEEEEecCc-cc--hHHHHHhhhcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCCCCCCCCCCeEE
Q 007179 454 ITSAPDD-DYLSVHIRTLGD-WT--RQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVL 529 (614)
Q Consensus 454 ias~p~~-~~l~l~ir~~g~-~T--~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vv 529 (614)
+||-|++ +.+.|-||.... .. ..-....+...-+++ .+++|.|.||||.++. -+....+|
T Consensus 216 mAsYPeE~giI~~NvRIAtPPp~~~~~PpG~mSSyi~sLK---------------pGDKvtisGPfGEfFa-Kdtdaemv 279 (410)
T COG2871 216 MASYPEEKGIIKLNVRIATPPPRNPDAPPGQMSSYIWSLK---------------PGDKVTISGPFGEFFA-KDTDAEMV 279 (410)
T ss_pred hhcChhhcCeEEEEEEeccCCCCCCCCCccceeeeEEeec---------------CCCeEEEeccchhhhh-ccCCCceE
Confidence 9999965 678888887531 10 011111111111222 3699999999999874 34567899
Q ss_pred EEEeCcCHHHHHHHHHHHHHhhcccch-------------hHHHHHhcccccCCCEEEE-EecCCCCCCcccccccccCC
Q 007179 530 LVGLGIGATPMISIVKDIVNNMKAIEE-------------EEENDLENGRDTGVNTTII-IIDNNYEPFFFWTQKKGPIQ 595 (614)
Q Consensus 530 lIagG~GItp~~s~l~~l~~~~~~~~~-------------~~~~~l~~l~~~~~~~~v~-~~~~~~~~~~~w~g~~G~i~ 595 (614)
+|+||.|.+|+.|.+-+.+.+.+..+. .+.++.++|++.++|..-| ++++|.++ =+|+|.+|+|.
T Consensus 280 FigGGAGmapmRSHIfDqL~rlhSkRkis~WYGARS~rE~fY~Ed~d~L~ae~pNF~wH~aLSdplpE-DnW~g~TgFih 358 (410)
T COG2871 280 FIGGGAGMAPMRSHIFDQLKRLHSKRKISFWYGARSLREMFYQEDFDQLQAENPNFHWHLALSDPLPE-DNWDGYTGFIH 358 (410)
T ss_pred EEecCcCcCchHHHHHHHHHhhcccceeeeeeccchHHHhHHHHHHHHHHhhCCCcEEEEEecCCCCc-CCcccchhHHH
Confidence 999999999999999988876443222 2456899998899995444 56665432 15999999998
Q ss_pred hHHHH
Q 007179 596 DKKSI 600 (614)
Q Consensus 596 ~~~~~ 600 (614)
.+.-+
T Consensus 359 nv~~e 363 (410)
T COG2871 359 NVLYE 363 (410)
T ss_pred HHHHh
Confidence 87655
No 75
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=99.35 E-value=2.9e-12 Score=109.07 Aligned_cols=91 Identities=27% Similarity=0.470 Sum_probs=75.0
Q ss_pred eEEEEEEEEecCCEEEEEEeCCC---CcccCCCCEEEEEeCCCCCCccccceeccCCCC-CcEEEEEEec--CccchHHH
Q 007179 405 AVSIQKVAVYPGNVLALHMSKPD---RFRYKSGQYMFVNCAAVSPFEWHPFSITSAPDD-DYLSVHIRTL--GDWTRQLR 478 (614)
Q Consensus 405 ~~~v~~~~~~~~~v~~l~l~~~~---~~~~~pGQ~v~l~~p~~~~~~~hpfTias~p~~-~~l~l~ir~~--g~~T~~L~ 478 (614)
+++|++++.+++++..++|+.++ .+.+.||||+.|+++..+...+||||++|.|++ +.++|+||.. |..|+.|.
T Consensus 1 ~~~v~~~~~~s~~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~~~~~~~~~ik~~~~G~~S~~L~ 80 (99)
T PF00970_consen 1 KAKVVEIEELSPDVKIFRFKLPDPDQKLDFKPGQFVSVRVPINGKQVSRPYSPASSPDDKGYLEFAIKRYPNGRVSRYLH 80 (99)
T ss_dssp EEEEEEEEEESSSEEEEEEEESSTTTT-SSTTT-EEEEEEEETTEEEEEEEEBCSSTTSSSEEEEEEEECTTSHHHHHHH
T ss_pred CEEEEEEEEeCCCeEEEEEEECCCCcccccCcceEEEEEEccCCcceecceeEeeecCCCCcEEEEEEeccCCHHHHHHH
Confidence 36889999999999999998774 367999999999999655567899999999975 5899999999 67888884
Q ss_pred HHhhhcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCC
Q 007179 479 TVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAP 518 (614)
Q Consensus 479 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~ 518 (614)
+ ++ + |+.+.+.||+|.+
T Consensus 81 ~-l~-------~---------------Gd~v~i~gP~G~f 97 (99)
T PF00970_consen 81 Q-LK-------P---------------GDEVEIRGPYGNF 97 (99)
T ss_dssp T-SC-------T---------------TSEEEEEEEESSE
T ss_pred h-CC-------C---------------CCEEEEEEccccc
Confidence 4 32 2 5899999999986
No 76
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.34 E-value=3.9e-12 Score=109.66 Aligned_cols=110 Identities=21% Similarity=0.358 Sum_probs=96.6
Q ss_pred HHHHHHHHHhcccCCCC-CcccHHHHHHHHHHhcCCCh-HHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCcccchh
Q 007179 8 FAVELFDALTRRRNIQG-DTITKDQLREFWDQISDQSF-DSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQ 85 (614)
Q Consensus 8 ~~~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~~~~~~-~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~~~~ 85 (614)
|-+++.+.|. +|| |.+++++|+.+++.++...| +-|+..+|+.||.|+|+.|..+++.+.+.. +..++++ +
T Consensus 72 fk~ri~e~FS----eDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~-lTr~eLs--~ 144 (189)
T KOG0038|consen 72 FKRRICEVFS----EDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTS-LTRDELS--D 144 (189)
T ss_pred HHHHHHHHhc----cCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHH-HhhccCC--H
Confidence 3478888999 999 99999999999999887755 568999999999999999999999998863 3334555 7
Q ss_pred HHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhCCcccc
Q 007179 86 KQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQSV 124 (614)
Q Consensus 86 ~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~~~~~~ 124 (614)
++++..++++.+++|.|+||.+++.||.+++.+.|+.++
T Consensus 145 eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~raPDFls 183 (189)
T KOG0038|consen 145 EEVELICEKVIEEADLDGDGKLSFAEFEHVILRAPDFLS 183 (189)
T ss_pred HHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhCcchHh
Confidence 888999999999999999999999999999999998864
No 77
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.32 E-value=6.1e-12 Score=115.83 Aligned_cols=110 Identities=17% Similarity=0.230 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhcccCCCC-CcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCcccchh
Q 007179 7 DFAVELFDALTRRRNIQG-DTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQ 85 (614)
Q Consensus 7 ~~~~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~~~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~~~~ 85 (614)
..++++|+.+| +++ |.|+.+|+..+++.++..+++++++.+++.+|.|++|.|+.+||..++..........
T Consensus 8 ~el~~~F~~fD----~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~--- 80 (151)
T KOG0027|consen 8 LELKEAFQLFD----KDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDE--- 80 (151)
T ss_pred HHHHHHHHHHC----CCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccc---
Confidence 33588888888 888 8888888888888888888888888888888888888888888888887432221111
Q ss_pred HHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhCCccc
Q 007179 86 KQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQS 123 (614)
Q Consensus 86 ~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~~~~~ 123 (614)
+...+++.+.|+.+|.|++|+||.+|++.+|+..-+..
T Consensus 81 ~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~ 118 (151)
T KOG0027|consen 81 EASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKL 118 (151)
T ss_pred cccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcC
Confidence 02455677788888888888888888888887665543
No 78
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.31 E-value=1.9e-11 Score=112.57 Aligned_cols=95 Identities=16% Similarity=0.313 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHhcccCCCC-CcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhcc-----
Q 007179 5 SKDFAVELFDALTRRRNIQG-DTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASA----- 78 (614)
Q Consensus 5 ~~~~~~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~~~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~----- 78 (614)
+++.++.+++.+| .++ |.|+++||..++.........+. -+.+|++...+..-..
T Consensus 42 t~~el~~~~~~~D----~dg~g~I~~~eF~~l~~~~~~~~~~~~---------------~~~~el~eaF~~fD~d~~G~I 102 (151)
T KOG0027|consen 42 TEEELRDLIKEID----LDGDGTIDFEEFLDLMEKLGEEKTDEE---------------ASSEELKEAFRVFDKDGDGFI 102 (151)
T ss_pred CHHHHHHHHHHhC----CCCCCeEcHHHHHHHHHhhhccccccc---------------ccHHHHHHHHHHHccCCCCcC
Confidence 4555799999999 999 99999999999987654432222 4556677666621110
Q ss_pred --Ccc-----cchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHh
Q 007179 79 --NKL-----SNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQ 118 (614)
Q Consensus 79 --~~~-----~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~ 118 (614)
..+ ...+....++++.+++.+|.|+||.|+|+||.+++..
T Consensus 103 s~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 103 SASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred cHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 000 0112334778999999999999999999999998864
No 79
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=99.31 E-value=4.3e-12 Score=133.63 Aligned_cols=139 Identities=15% Similarity=0.132 Sum_probs=96.4
Q ss_pred CcccCCCCEEEEEeCCCCCCccccceeccCCC--CCcEEEEEEec----------CccchHHHHHhhhcCCCCCCCCCcc
Q 007179 428 RFRYKSGQYMFVNCAAVSPFEWHPFSITSAPD--DDYLSVHIRTL----------GDWTRQLRTVFSEVCRPPPNGISGL 495 (614)
Q Consensus 428 ~~~~~pGQ~v~l~~p~~~~~~~hpfTias~p~--~~~l~l~ir~~----------g~~T~~L~~~~~~~~~~~~~g~~~~ 495 (614)
+.++.||||+.+..|. ..|+|||+|+|. ++.++++|+.. |-.|+.|.+..+ +
T Consensus 129 ~~~~~~gq~l~l~~~~----~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~G~~S~~L~~~~~-------~----- 192 (360)
T cd06199 129 PARLTAEELLDLLRPL----QPRLYSIASSPKAVPDEVHLTVAVVRYESHGRERKGVASTFLADRLK-------E----- 192 (360)
T ss_pred CCCCCHHHHHHhCcCC----CCcceeeccCcccCCCeEEEEEEEeeecCCCCccceehhHHHHhcCC-------C-----
Confidence 3578899999997543 579999999995 46899998854 556777765431 2
Q ss_pred ccccCCCCCCCCEEEEeCcc-CCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhhcc-----------c-ch-hHHHH
Q 007179 496 LRAEGHNNPDFPRVLIDGPY-GAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKA-----------I-EE-EEEND 561 (614)
Q Consensus 496 ~~~~~~~~~~~~~v~i~GPy-G~~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~~~-----------~-~~-~~~~~ 561 (614)
|+.+.+.+|. |.+..+.....++|||||||||||++|++++....... . .+ .+.+|
T Consensus 193 ----------Gd~v~v~~~~~~~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~L~~G~R~~~~D~~y~~e 262 (360)
T cd06199 193 ----------GDTVPVFVQPNPHFRLPEDPDAPIIMVGPGTGIAPFRAFLQEREATGAKGKNWLFFGERHFATDFLYQDE 262 (360)
T ss_pred ----------CCEEEEEEecCCCcCCCCCCCCCEEEEecCcChHHHHHHHHHHHhccCCCcEEEEEcCCCCccchhHHHH
Confidence 4889998755 56765444467999999999999999999988754221 1 12 35569
Q ss_pred HhcccccCCCE-EEEEecCCCCCCcccccccccCChHHH
Q 007179 562 LENGRDTGVNT-TIIIIDNNYEPFFFWTQKKGPIQDKKS 599 (614)
Q Consensus 562 l~~l~~~~~~~-~v~~~~~~~~~~~~w~g~~G~i~~~~~ 599 (614)
|+++.+.+... ...+.+++.+ .+|+|++.+.
T Consensus 263 l~~~~~~~~~~~~~~a~Sr~~~-------~~~yVq~~l~ 294 (360)
T cd06199 263 LQQWLKDGVLTRLDTAFSRDQA-------EKVYVQDRMR 294 (360)
T ss_pred HHHHHHcCCCeEEEEEEccCCC-------CCccHHHHHH
Confidence 99887666553 3445555432 3466665443
No 80
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=99.29 E-value=5.3e-12 Score=140.98 Aligned_cols=139 Identities=13% Similarity=0.108 Sum_probs=99.4
Q ss_pred cccCCCCEEEEEeCCCCCCccccceeccCCC--CCcEEEEEEec----------CccchHHHHHhhhcCCCCCCCCCccc
Q 007179 429 FRYKSGQYMFVNCAAVSPFEWHPFSITSAPD--DDYLSVHIRTL----------GDWTRQLRTVFSEVCRPPPNGISGLL 496 (614)
Q Consensus 429 ~~~~pGQ~v~l~~p~~~~~~~hpfTias~p~--~~~l~l~ir~~----------g~~T~~L~~~~~~~~~~~~~g~~~~~ 496 (614)
.++.||||+.+..|. +.|||||+|+|. ++.++|+|+.. |..|..|.+.++ +
T Consensus 367 ~~~~~gq~v~ll~~~----~~R~YSIaSsp~~~~~~l~ltV~~v~~~~~~~~~~G~~S~~L~~~l~-------~------ 429 (597)
T TIGR01931 367 ADLDAEQLISLLRPL----TPRLYSISSSQSEVGDEVHLTVGVVRYQAHGRARLGGASGFLAERLK-------E------ 429 (597)
T ss_pred CCCCHHHHHHhCccc----CCceeeeccCcccCCCEEEEEEEEEEecCCCCccccchhHHHHhhCC-------C------
Confidence 578999999998763 679999999984 56899999854 778888876542 2
Q ss_pred cccCCCCCCCCEEEEeCccC-CCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhhcc------------cch-hHHHHH
Q 007179 497 RAEGHNNPDFPRVLIDGPYG-APAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKA------------IEE-EEENDL 562 (614)
Q Consensus 497 ~~~~~~~~~~~~v~i~GPyG-~~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~~~------------~~~-~~~~~l 562 (614)
++++.|.||.| .|..+.....++|||||||||||++|++++....... ..+ .+.+||
T Consensus 430 ---------Gd~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~~g~~~LffG~R~~~~D~ly~~El 500 (597)
T TIGR01931 430 ---------GDTVPVYIEPNDNFRLPEDPDTPIIMIGPGTGVAPFRAFMQERAEDGAKGKNWLFFGNPHFTTDFLYQVEW 500 (597)
T ss_pred ---------CCEEEEEEeeCCcccCCCCCCCCEEEEcCCcCchhHHHHHHHHHHccCCCCEEEEECCCCCCcchhHHHHH
Confidence 47899998654 5665444457899999999999999999998765322 112 355689
Q ss_pred hcccccCCCEE-EEEecCCCCCCcccccccccCChHHHH
Q 007179 563 ENGRDTGVNTT-IIIIDNNYEPFFFWTQKKGPIQDKKSI 600 (614)
Q Consensus 563 ~~l~~~~~~~~-v~~~~~~~~~~~~w~g~~G~i~~~~~~ 600 (614)
+.+.+.+.... ..+.+++ .+.+|+|++.+.+
T Consensus 501 ~~~~~~~~l~~l~~afSRd-------~~~k~yVqd~l~e 532 (597)
T TIGR01931 501 QNYLKKGVLTKMDLAFSRD-------QAEKIYVQHRIRE 532 (597)
T ss_pred HHHHHcCCCceeEEEEecC-------CCCCccHHHHHHH
Confidence 88876665432 2344542 1356777776554
No 81
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.25 E-value=5.8e-11 Score=134.97 Aligned_cols=119 Identities=18% Similarity=0.311 Sum_probs=94.3
Q ss_pred eEEEEEEEEecCCEEEEEEeCCCC-cccCCCCEEEEEeCCCC--CC-ccccceeccCC-CCCcEEEEEEecCccchHHHH
Q 007179 405 AVSIQKVAVYPGNVLALHMSKPDR-FRYKSGQYMFVNCAAVS--PF-EWHPFSITSAP-DDDYLSVHIRTLGDWTRQLRT 479 (614)
Q Consensus 405 ~~~v~~~~~~~~~v~~l~l~~~~~-~~~~pGQ~v~l~~p~~~--~~-~~hpfTias~p-~~~~l~l~ir~~g~~T~~L~~ 479 (614)
..+|++++.+++++++++++.|.. -.++||||+.|+.++.+ .. +.+||||++.+ +++.+++.++..|..|+.|.+
T Consensus 792 ~~~Vv~~~~lap~i~~L~l~aP~iA~~~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~e~g~It~i~rvVGkgT~~Ls~ 871 (1028)
T PRK06567 792 TSRVNKINILDDKTFELIIHSPLAAKNFKFGQFFRLQNYSEDAAKLIEPVALSPIDIDVEKGLISFIVFEVGKSTSLCKT 871 (1028)
T ss_pred ceEEEEEEEecCCEEEEEEeCcchhhcCCCCceEEEEeCCCCCccccCceeEEeeccCCCCCEEEEEEEEEChHHHHHhc
Confidence 458899999999999999998863 36899999999986532 22 45689999876 467899999999999988865
Q ss_pred HhhhcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHh
Q 007179 480 VFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNN 550 (614)
Q Consensus 480 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~ 550 (614)
+- + ++.+.+.||+|.++. ....+++|+||||+|++| +++.+.+.
T Consensus 872 l~--------~---------------Gd~v~v~GPLG~pF~-i~~~k~vLLVgGGVGiAp---Lak~Lk~~ 915 (1028)
T PRK06567 872 LS--------E---------------NEKVVLMGPTGSPLE-IPQNKKIVIVDFEVGNIG---LLKVLKEN 915 (1028)
T ss_pred CC--------C---------------CCEEEEEcccCCCCC-CCCCCeEEEEEccccHHH---HHHHHHHC
Confidence 32 3 478999999999864 334679999999999997 44555443
No 82
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=99.22 E-value=7e-11 Score=126.10 Aligned_cols=133 Identities=17% Similarity=0.180 Sum_probs=93.3
Q ss_pred CCccccceeccCCCC--CcEEEEEEec-----CccchHHHHHhhhcCCCCCCCCCccccccCCCCCCCCEEEEeC-ccCC
Q 007179 446 PFEWHPFSITSAPDD--DYLSVHIRTL-----GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDG-PYGA 517 (614)
Q Consensus 446 ~~~~hpfTias~p~~--~~l~l~ir~~-----g~~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~G-PyG~ 517 (614)
..+.|+|||+|+|.. +.++++|+.. |-.|..|.+..+.. + ..++.+.+.| |.|.
T Consensus 171 ~~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~~G~~S~~L~~l~~~~------~------------~~G~~v~i~~~~~g~ 232 (398)
T cd06203 171 RLQPRPYSIASSPLEGPGKLRFIFSVVEFPAKGLCTSWLESLCLSA------S------------SHGVKVPFYLRSSSR 232 (398)
T ss_pred cCCCcceeecCCcccCCCeEEEEEEEEEecCCChhhHHHHHhhhhh------c------------CCCCEEEEEEecCCC
Confidence 347899999999954 7899998875 55788887655310 0 0247899998 6777
Q ss_pred CCCCCC-CCCeEEEEEeCcCHHHHHHHHHHHHHhh-----------------ccc-ch-hHHHHHhcccccCCCE-EEEE
Q 007179 518 PAQDYK-EYEVVLLVGLGIGATPMISIVKDIVNNM-----------------KAI-EE-EEENDLENGRDTGVNT-TIII 576 (614)
Q Consensus 518 ~~~~~~-~~~~vvlIagG~GItp~~s~l~~l~~~~-----------------~~~-~~-~~~~~l~~l~~~~~~~-~v~~ 576 (614)
+..+.. ...++|||||||||||++|++++..... ++. .+ .+.+||+++.+.+... ...+
T Consensus 233 F~lp~~~~~~piImIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y~~El~~~~~~~~~~~~~~a 312 (398)
T cd06203 233 FRLPPDDLRRPIIMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLEEGILTRLIVA 312 (398)
T ss_pred cCCCCcCCCCCEEEEcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhHHHHHHHHHHcCCCceEEEE
Confidence 765433 3578999999999999999999876521 111 12 3557999887766653 4455
Q ss_pred ecCCCCCCcccccccccCChHHHH
Q 007179 577 IDNNYEPFFFWTQKKGPIQDKKSI 600 (614)
Q Consensus 577 ~~~~~~~~~~w~g~~G~i~~~~~~ 600 (614)
.+++.+. | |.+|+|++.+.+
T Consensus 313 ~SRd~~~---~-g~k~yVqd~l~~ 332 (398)
T cd06203 313 FSRDEND---G-STPKYVQDKLEE 332 (398)
T ss_pred ECCCCCC---C-CCceecchHHHh
Confidence 6666554 4 688999987654
No 83
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.21 E-value=6.8e-11 Score=104.33 Aligned_cols=103 Identities=17% Similarity=0.253 Sum_probs=53.6
Q ss_pred HHHHHHHHHhcccCCCC-CcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCcccchhH
Q 007179 8 FAVELFDALTRRRNIQG-DTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQK 86 (614)
Q Consensus 8 ~~~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~~~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~~~~~ 86 (614)
.++..|+.|| .++ |+|+.+|+..++.+++.....+++..+..-+|+++.|.|++++|+.++...+ . +.
T Consensus 34 ~i~e~f~lfd----~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~-----~--e~ 102 (172)
T KOG0028|consen 34 EIKEAFELFD----PDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKL-----G--ER 102 (172)
T ss_pred hHHHHHHhhc----cCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHH-----h--cc
Confidence 3455566666 555 6666666666665555555555555555555555555555555555554111 1 11
Q ss_pred HHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhCCc
Q 007179 87 QAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPA 121 (614)
Q Consensus 87 ~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~~~ 121 (614)
...+++..+|+.+|.|++|.||..+|+.+..+-.+
T Consensus 103 dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLge 137 (172)
T KOG0028|consen 103 DTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGE 137 (172)
T ss_pred CcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCc
Confidence 13344445555555555555555555555544433
No 84
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=99.17 E-value=1.3e-10 Score=123.69 Aligned_cols=124 Identities=18% Similarity=0.167 Sum_probs=86.4
Q ss_pred CCccccceeccCCC--CCcEEEEEEec-----------CccchHHHHHhhhcCCCCCCCCCccccccCCCCCCCCEEEEe
Q 007179 446 PFEWHPFSITSAPD--DDYLSVHIRTL-----------GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLID 512 (614)
Q Consensus 446 ~~~~hpfTias~p~--~~~l~l~ir~~-----------g~~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~ 512 (614)
..+.|||||+|+|. ++.++|+|+.. |-.|+.|.+ + ++ |+++.+.
T Consensus 161 ~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~-l-------~~---------------Gd~v~v~ 217 (382)
T cd06207 161 LIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAG-L-------KV---------------GQRVTVF 217 (382)
T ss_pred CCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhh-c-------CC---------------CCEEEEE
Confidence 45789999999995 47899999875 445666643 2 12 5889999
Q ss_pred CccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhh---------------ccc-ch-hHHHHHhcccccCCCE-EE
Q 007179 513 GPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNM---------------KAI-EE-EEENDLENGRDTGVNT-TI 574 (614)
Q Consensus 513 GPyG~~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~---------------~~~-~~-~~~~~l~~l~~~~~~~-~v 574 (614)
||+|.+..+.....++|||||||||||++|++++..... ++. .+ .+.+|++++.+.+... ..
T Consensus 218 ~p~g~F~lp~~~~~plImIa~GtGIAP~rs~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~ 297 (382)
T cd06207 218 IKKSSFKLPKDPKKPIIMVGPGTGLAPFRAFLQERAALLAQGPEIGPVLLYFGCRHEDKDYLYKEELEEYEKSGVLTTLG 297 (382)
T ss_pred EECCcccCCCCCCCCEEEEcCCccHHHHHHHHHHHHHHhhcCccCCCEEEEECCCCCCccccHHHHHHHHHhCCCCceEE
Confidence 999988754444578999999999999999999876431 111 22 3567999887766653 34
Q ss_pred EEecCCCCCCcccccccccCChHHH
Q 007179 575 IIIDNNYEPFFFWTQKKGPIQDKKS 599 (614)
Q Consensus 575 ~~~~~~~~~~~~w~g~~G~i~~~~~ 599 (614)
.+.+++.+ .+|+|++.+.
T Consensus 298 ~a~Srd~~-------~~~yVq~~l~ 315 (382)
T cd06207 298 TAFSRDQP-------KKVYVQDLIR 315 (382)
T ss_pred EEecCCCC-------CceEhHHHHH
Confidence 44554322 3567766543
No 85
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=99.13 E-value=1.3e-10 Score=123.60 Aligned_cols=135 Identities=10% Similarity=0.091 Sum_probs=88.8
Q ss_pred cCCCCEEEEEeCCCCCCccccceeccCCC--CCcEEEEEEe------------cCccchHHHHHhhhcCCCCCCCCCccc
Q 007179 431 YKSGQYMFVNCAAVSPFEWHPFSITSAPD--DDYLSVHIRT------------LGDWTRQLRTVFSEVCRPPPNGISGLL 496 (614)
Q Consensus 431 ~~pGQ~v~l~~p~~~~~~~hpfTias~p~--~~~l~l~ir~------------~g~~T~~L~~~~~~~~~~~~~g~~~~~ 496 (614)
...||++.+. |.. +.|+|||+|+|. ++.+++.|+. .|..|+.|.+ +. +
T Consensus 147 ~~~~~~l~~~-p~l---~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~-l~-------~------ 208 (384)
T cd06206 147 LPLATFLAML-PPM---RPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSS-LR-------P------ 208 (384)
T ss_pred CCHHHHHHhC-ccc---CCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhh-CC-------C------
Confidence 4568888886 433 679999999985 3556666665 3456777743 21 2
Q ss_pred cccCCCCCCCCEEE--EeCccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhh---------------ccc-ch-h
Q 007179 497 RAEGHNNPDFPRVL--IDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNM---------------KAI-EE-E 557 (614)
Q Consensus 497 ~~~~~~~~~~~~v~--i~GPyG~~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~---------------~~~-~~-~ 557 (614)
|+.+. +.||+|.+..+....+++|||||||||||++|++++..... +.. .+ .
T Consensus 209 ---------Gd~v~v~i~~p~g~F~l~~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~l 279 (384)
T cd06206 209 ---------GDSIHVSVRPSHSAFRPPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQGRKLAPALLFFGCRHPDHDDL 279 (384)
T ss_pred ---------CCeEEEEEecCCCccCCCCCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcCCCcCCEEEEEeCCCCCcccc
Confidence 35666 56999998765445678999999999999999999876431 111 12 3
Q ss_pred HHHHHhcccccCCC-EEEEEecCCCCCCcccccccccCChHHH
Q 007179 558 EENDLENGRDTGVN-TTIIIIDNNYEPFFFWTQKKGPIQDKKS 599 (614)
Q Consensus 558 ~~~~l~~l~~~~~~-~~v~~~~~~~~~~~~w~g~~G~i~~~~~ 599 (614)
+.+|++++.+. .+ ....+.+++.++ .+|+|++.+.
T Consensus 280 y~~el~~~~~~-~~~~l~~a~Sr~~~~------~~~yVq~~i~ 315 (384)
T cd06206 280 YRDELEEWEAA-GVVSVRRAYSRPPGG------GCRYVQDRLW 315 (384)
T ss_pred hHHHHHHHHHC-CCeEEEEEecccCCC------CCEechhhHH
Confidence 56688888653 33 334455554332 3677776543
No 86
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.13 E-value=4.1e-10 Score=102.00 Aligned_cols=108 Identities=17% Similarity=0.250 Sum_probs=92.0
Q ss_pred chHHHHHHHHHHHhcccCCCC-CcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCccc
Q 007179 4 DSKDFAVELFDALTRRRNIQG-DTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLS 82 (614)
Q Consensus 4 ~~~~~~~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~~~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~ 82 (614)
+..+.+++.|..+| +++ |.|+.+|+..+++.++.++++..+..+|..+|. +++.|+++||..+|.....
T Consensus 17 ~qi~~lkeaF~l~D----~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~----- 86 (160)
T COG5126 17 EQIQELKEAFQLFD----RDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLK----- 86 (160)
T ss_pred HHHHHHHHHHHHhC----cCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhc-----
Confidence 33344689999999 999 999999999999999999999999999999999 9999999999999963221
Q ss_pred chhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhCCccc
Q 007179 83 NIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQS 123 (614)
Q Consensus 83 ~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~~~~~ 123 (614)
....++.+...|+.+|.|++|+|+.+|+..+++...+.+
T Consensus 87 --~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~ 125 (160)
T COG5126 87 --RGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERL 125 (160)
T ss_pred --cCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccC
Confidence 222366778899999999999999999999999665443
No 87
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.11 E-value=3.7e-10 Score=88.27 Aligned_cols=66 Identities=29% Similarity=0.460 Sum_probs=56.2
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHH
Q 007179 47 RLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLL 116 (614)
Q Consensus 47 kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l 116 (614)
+++.+|+.+|+|++|+|+.+|++.+++.... ...+...++.++.+|+.+|.|+||.|+++||..++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~----~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGR----DMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTS----HSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcc----cccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 5789999999999999999999999973221 11156778899999999999999999999999875
No 88
>PTZ00183 centrin; Provisional
Probab=99.11 E-value=4.2e-10 Score=104.29 Aligned_cols=104 Identities=22% Similarity=0.305 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHHhcccCCCC-CcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCcccc
Q 007179 5 SKDFAVELFDALTRRRNIQG-DTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSN 83 (614)
Q Consensus 5 ~~~~~~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~~~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~~ 83 (614)
..+.++++|..+| .++ |.|+.+||..++..++.....+.+..+|+.+|.|++|.|+.+||..++......
T Consensus 15 ~~~~~~~~F~~~D----~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~----- 85 (158)
T PTZ00183 15 QKKEIREAFDLFD----TDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGE----- 85 (158)
T ss_pred HHHHHHHHHHHhC----CCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcC-----
Confidence 3344678888888 777 888888888888877655566778888888888888888888887776522111
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhC
Q 007179 84 IQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQA 119 (614)
Q Consensus 84 ~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~ 119 (614)
...++.++.+|+.+|.|++|.|+.+||..++...
T Consensus 86 --~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~ 119 (158)
T PTZ00183 86 --RDPREEILKAFRLFDDDKTGKISLKNLKRVAKEL 119 (158)
T ss_pred --CCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHh
Confidence 1123456677888888888888888888777653
No 89
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.08 E-value=5.9e-10 Score=98.47 Aligned_cols=102 Identities=18% Similarity=0.372 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHhcccCCCC-CcccHHHHHHHHH-HhcCCChHHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCcccc
Q 007179 6 KDFAVELFDALTRRRNIQG-DTITKDQLREFWD-QISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSN 83 (614)
Q Consensus 6 ~~~~~~~f~~~D~~~~~~~-G~I~~~ef~~~l~-~~~~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~~ 83 (614)
++.+.++...+| +++ |.|++++|...+. +++..++.++++.+|+.+|.|++|.|+..+|+.+++ .++
T Consensus 68 k~ei~kll~d~d----k~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvak------eLg- 136 (172)
T KOG0028|consen 68 KEEILKLLADVD----KEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAK------ELG- 136 (172)
T ss_pred hHHHHHHHHhhh----hccCceechHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHH------HhC-
Confidence 445678888889 999 9999999999986 577788999999999999999999999999999985 455
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhC
Q 007179 84 IQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQA 119 (614)
Q Consensus 84 ~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~ 119 (614)
+...++++++|.+++|.|+||.|+-+||..+|+..
T Consensus 137 -enltD~El~eMIeEAd~d~dgevneeEF~~imk~t 171 (172)
T KOG0028|consen 137 -ENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKKT 171 (172)
T ss_pred -ccccHHHHHHHHHHhcccccccccHHHHHHHHhcC
Confidence 56678999999999999999999999999998764
No 90
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=99.06 E-value=3.1e-10 Score=126.32 Aligned_cols=139 Identities=14% Similarity=0.109 Sum_probs=93.6
Q ss_pred cccCCCCEEEEEeCCCCCCccccceeccCCC--CCcEEEEEEec----------CccchHHHHHhhhcCCCCCCCCCccc
Q 007179 429 FRYKSGQYMFVNCAAVSPFEWHPFSITSAPD--DDYLSVHIRTL----------GDWTRQLRTVFSEVCRPPPNGISGLL 496 (614)
Q Consensus 429 ~~~~pGQ~v~l~~p~~~~~~~hpfTias~p~--~~~l~l~ir~~----------g~~T~~L~~~~~~~~~~~~~g~~~~~ 496 (614)
.++.||||+.+..|. +.|+|||+|+|. ++.+.+.|+.. |..|..|.+.++ +
T Consensus 370 ~~~~~~q~l~ll~~l----~pR~YSIaSsp~~~~~~v~ltv~~v~~~~~g~~~~G~~S~~L~~~l~-------~------ 432 (600)
T PRK10953 370 AQLDAEQLIGLLRPL----TPRLYSIASSQAEVENEVHITVGVVRYDIEGRARAGGASSFLADRLE-------E------ 432 (600)
T ss_pred CCCCHHHHHHhCCCC----CCeeeecccCCCCCCCeEEEEEEEEEeecCCCCcCceEhhhhhhcCC-------C------
Confidence 468899999888663 579999999984 45677776432 334555554331 2
Q ss_pred cccCCCCCCCCEEEEeCccC-CCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhhcccc------------h-hHHHHH
Q 007179 497 RAEGHNNPDFPRVLIDGPYG-APAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE------------E-EEENDL 562 (614)
Q Consensus 497 ~~~~~~~~~~~~v~i~GPyG-~~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~~~~~------------~-~~~~~l 562 (614)
++++.|.||.| .|..+.....++||||+||||||++|++++........+ + .+.+||
T Consensus 433 ---------Gd~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~~~~~~LffG~R~~~~D~lY~~El 503 (600)
T PRK10953 433 ---------EGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADGAPGKNWLFFGNPHFTEDFLYQVEW 503 (600)
T ss_pred ---------CCEEEEEeccCCcccCCCCCCCCEEEEecCcCcHHHHHHHHHHHHcCCCCCeEEEeeccCCccchhHHHHH
Confidence 58899999886 565544455799999999999999999999876532211 2 456799
Q ss_pred hcccccCCCEEE-EEecCCCCCCcccccccccCChHHHH
Q 007179 563 ENGRDTGVNTTI-IIIDNNYEPFFFWTQKKGPIQDKKSI 600 (614)
Q Consensus 563 ~~l~~~~~~~~v-~~~~~~~~~~~~w~g~~G~i~~~~~~ 600 (614)
+.+.+.+.-..+ ...+++. +.+++|++.+.+
T Consensus 504 ~~~~~~g~l~~l~~afSRd~-------~~k~YVQ~~l~e 535 (600)
T PRK10953 504 QRYVKEGLLTRIDLAWSRDQ-------KEKIYVQDKLRE 535 (600)
T ss_pred HHHHHcCCcceEEEEECCCC-------CCCCcHHHHHHH
Confidence 998776654322 3334332 345677665443
No 91
>PTZ00183 centrin; Provisional
Probab=99.06 E-value=1.2e-09 Score=101.26 Aligned_cols=104 Identities=13% Similarity=0.257 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHhcccCCCC-CcccHHHHHHHHHHh-cCCChHHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCcccc
Q 007179 6 KDFAVELFDALTRRRNIQG-DTITKDQLREFWDQI-SDQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSN 83 (614)
Q Consensus 6 ~~~~~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~-~~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~~ 83 (614)
.+.++.+|+.+| .++ |.|+++||..++... .....+++++.+|+.+|.|++|.|+.+||..++.. ..
T Consensus 52 ~~~~~~l~~~~d----~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~------~~- 120 (158)
T PTZ00183 52 KEEIKQMIADVD----KDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKE------LG- 120 (158)
T ss_pred HHHHHHHHHHhC----CCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH------hC-
Confidence 445789999999 888 999999999988764 34466788999999999999999999999998852 11
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhCCc
Q 007179 84 IQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPA 121 (614)
Q Consensus 84 ~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~~~ 121 (614)
....++.++.+|..+|.|++|.|+++||..++...|.
T Consensus 121 -~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 157 (158)
T PTZ00183 121 -ETITDEELQEMIDEADRNGDGEISEEEFYRIMKKTNL 157 (158)
T ss_pred -CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhcccC
Confidence 1234677889999999999999999999999988764
No 92
>PRK06214 sulfite reductase; Provisional
Probab=99.04 E-value=1.2e-09 Score=119.26 Aligned_cols=123 Identities=20% Similarity=0.300 Sum_probs=81.6
Q ss_pred CCccccceeccCCC--CCcEEEEEEec----------CccchHHHHHhhhcCCCCCCCCCccccccCCCCCCCCEEEE--
Q 007179 446 PFEWHPFSITSAPD--DDYLSVHIRTL----------GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLI-- 511 (614)
Q Consensus 446 ~~~~hpfTias~p~--~~~l~l~ir~~----------g~~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i-- 511 (614)
..+.|||||+|+|. .+.++|+|+.. |-.|+.|.+.++ + ++.+.+
T Consensus 313 ~l~pR~YSISSsP~~~~~~i~ltV~~V~~~~~~~~~~G~~S~~L~~~l~-------~---------------Gd~V~v~i 370 (530)
T PRK06214 313 PLQPRLYSISSSPKATPGRVSLTVDAVRYEIGSRLRLGVASTFLGERLA-------P---------------GTRVRVYV 370 (530)
T ss_pred CCCcEEEEeccCCcCCCCEEEEEEEEEeeccCCccccchhhHHHHhcCC-------C---------------CCEEEEEe
Confidence 45789999999995 57899999864 556677765442 2 355555
Q ss_pred eCccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhhcc------------cch-hHHHHHhcccccCCCEEE-EEe
Q 007179 512 DGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKA------------IEE-EEENDLENGRDTGVNTTI-III 577 (614)
Q Consensus 512 ~GPyG~~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~~~------------~~~-~~~~~l~~l~~~~~~~~v-~~~ 577 (614)
.+|+| |..+.....++||||+||||||++|++++....... ..+ .+.+||+.+.+.+....+ ...
T Consensus 371 ~~~~g-F~lp~~~~~PiImIg~GTGIAPfrsfLq~r~~~~~~g~~~LffG~R~~~~D~ly~dEL~~l~~~g~l~~l~~af 449 (530)
T PRK06214 371 QKAHG-FALPADPNTPIIMVGPGTGIAPFRAFLHERAATKAPGRNWLFFGHQRSATDFFYEDELNGLKAAGVLTRLSLAW 449 (530)
T ss_pred cCCCC-CccCCCCCCCEEEEcCCeeHHHHHHHHHHHHHhcCCCCeEEEEEecCChhhhHHHHHHHHHHHhCCceEEEEEE
Confidence 56777 654434456899999999999999999987643211 112 355699988776665433 334
Q ss_pred cCCCCCCcccccccccCChHH
Q 007179 578 DNNYEPFFFWTQKKGPIQDKK 598 (614)
Q Consensus 578 ~~~~~~~~~w~g~~G~i~~~~ 598 (614)
+++. +.+++|++.+
T Consensus 450 SRd~-------~~k~YVQ~~L 463 (530)
T PRK06214 450 SRDG-------EEKTYVQDRM 463 (530)
T ss_pred ecCC-------CCCCchhhHH
Confidence 4433 2345666544
No 93
>PTZ00184 calmodulin; Provisional
Probab=99.02 E-value=1.6e-09 Score=99.15 Aligned_cols=105 Identities=21% Similarity=0.279 Sum_probs=77.3
Q ss_pred chHHHHHHHHHHHhcccCCCC-CcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCccc
Q 007179 4 DSKDFAVELFDALTRRRNIQG-DTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLS 82 (614)
Q Consensus 4 ~~~~~~~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~~~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~ 82 (614)
+..+.+++.|..+| .++ |.|+.+||..++..++....++.++.+|+.+|.|++|.|+.+||..++......
T Consensus 8 ~~~~~~~~~F~~~D----~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~---- 79 (149)
T PTZ00184 8 EQIAEFKEAFSLFD----KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKD---- 79 (149)
T ss_pred HHHHHHHHHHHHHc----CCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccC----
Confidence 33444678888888 888 888888888888777766667788888888888888888888888777522111
Q ss_pred chhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhC
Q 007179 83 NIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQA 119 (614)
Q Consensus 83 ~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~ 119 (614)
...++.+..+|+.+|.|++|.|+.+||..++...
T Consensus 80 ---~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~ 113 (149)
T PTZ00184 80 ---TDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNL 113 (149)
T ss_pred ---CcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHH
Confidence 1123455677888888888888888888877653
No 94
>PTZ00184 calmodulin; Provisional
Probab=99.02 E-value=2.4e-09 Score=97.97 Aligned_cols=100 Identities=19% Similarity=0.353 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHhcccCCCC-CcccHHHHHHHHHHh-cCCChHHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCcccc
Q 007179 6 KDFAVELFDALTRRRNIQG-DTITKDQLREFWDQI-SDQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSN 83 (614)
Q Consensus 6 ~~~~~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~-~~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~~ 83 (614)
.+.++.+|+.+| .++ |.|+++||+.++... .....++.++.+|+.||.|++|.|+.+|+..+++. ..
T Consensus 46 ~~~~~~~~~~~d----~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~------~~- 114 (149)
T PTZ00184 46 EAELQDMINEVD----ADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTN------LG- 114 (149)
T ss_pred HHHHHHHHHhcC----cCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHH------HC-
Confidence 345689999999 888 999999999998764 33456788999999999999999999999999863 11
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHH
Q 007179 84 IQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLL 117 (614)
Q Consensus 84 ~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~ 117 (614)
....++.++.+|+.+|.+++|.|+++||..++.
T Consensus 115 -~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 115 -EKLTDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred -CCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 112367788899999999999999999998774
No 95
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=98.97 E-value=1.9e-09 Score=103.00 Aligned_cols=132 Identities=14% Similarity=0.111 Sum_probs=96.2
Q ss_pred ceeEEEEEEEEecCCEEEEEEeCCC----CcccCCCCEEEEEeCCCC--C--CccccceeccCCCCCcEEEEEEecCc--
Q 007179 403 IKAVSIQKVAVYPGNVLALHMSKPD----RFRYKSGQYMFVNCAAVS--P--FEWHPFSITSAPDDDYLSVHIRTLGD-- 472 (614)
Q Consensus 403 ~~~~~v~~~~~~~~~v~~l~l~~~~----~~~~~pGQ~v~l~~p~~~--~--~~~hpfTias~p~~~~l~l~ir~~g~-- 472 (614)
+.+++|+..+..++|+..+.+.+.. .....|||||.+....++ . ..-+.+|..++...+.+++.||+..+
T Consensus 149 ~~~F~vT~~~~~sSDv~~~~~~PK~~~~~~~~~~PGQYvsV~~~~~~~~~k~~~~~~~S~~~~t~rN~~R~sVr~~A~G~ 228 (385)
T KOG3378|consen 149 EVEFKVTELINESSDVKSVYLGPKDPAFRISHAHPGQYVSVLWEIPGLSHKTLREYSLSNRVDTCRNQFRISVRRVAGGV 228 (385)
T ss_pred ccceeeeeeeccccceeEEEecCCCcceeeccCCCCceEEEeecCCccchhHHHHHHHhhhhhhhccceeEEEeehhchh
Confidence 4678899999999999999997533 245789999999764332 2 12244555555567889999998743
Q ss_pred cchHHHHHhhhcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCCCCC---CCCCCeEEEEEeCcCHHHHHHHHHHHHH
Q 007179 473 WTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQD---YKEYEVVLLVGLGIGATPMISIVKDIVN 549 (614)
Q Consensus 473 ~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~---~~~~~~vvlIagG~GItp~~s~l~~l~~ 549 (614)
.++.+++.+ + .|+.+.++.|-|.+... .....+++|.|||+||||+++|++..+.
T Consensus 229 VS~~~H~~~-------K---------------VGD~v~~S~PAG~F~~~r~~~~~N~PL~~~a~GiGiTPLi~iiE~~~~ 286 (385)
T KOG3378|consen 229 VSNFVHDNL-------K---------------VGDIVGVSPPAGNFVYKRSEENVNRPLLCFAGGIGITPLIPIIETALL 286 (385)
T ss_pred hHHHhhccc-------c---------------ccceeeccCCCccceeehhhhccCCceEEecCCcCccccHHHHHHHHh
Confidence 233333322 2 35899999999998532 3345889999999999999999999888
Q ss_pred hhcccch
Q 007179 550 NMKAIEE 556 (614)
Q Consensus 550 ~~~~~~~ 556 (614)
.+.+++.
T Consensus 287 C~~~RP~ 293 (385)
T KOG3378|consen 287 CYSSRPF 293 (385)
T ss_pred cCCCCcH
Confidence 7766654
No 96
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.96 E-value=4.6e-09 Score=92.12 Aligned_cols=100 Identities=19% Similarity=0.367 Sum_probs=84.9
Q ss_pred hHHHHHHHHHHHhcccCCCC-CcccHHHHHHHHHHhcC---------------------------------CChHHHHHH
Q 007179 5 SKDFAVELFDALTRRRNIQG-DTITKDQLREFWDQISD---------------------------------QSFDSRLQT 50 (614)
Q Consensus 5 ~~~~~~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~~~---------------------------------~~~~~kl~~ 50 (614)
..|| ++.|+.+| +|+ |.|+.+++...+.++++ .++++-+..
T Consensus 31 IqEf-KEAF~~mD----qnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe~~I~~ 105 (171)
T KOG0031|consen 31 IQEF-KEAFNLMD----QNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEAPGPINFTVFLTMFGEKLNGTDPEEVILN 105 (171)
T ss_pred HHHH-HHHHHHHh----ccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHHHHHHH
Confidence 4555 99999999 999 99999999988877753 245677888
Q ss_pred HHHHhcCCCCCceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHH
Q 007179 51 FFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLL 117 (614)
Q Consensus 51 ~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~ 117 (614)
+|++||.+++|.|..+.++++|.. .. +...+++++.+++.+-.|..|.|+|.+|..+++
T Consensus 106 AF~~FD~~~~G~I~~d~lre~Ltt------~g--Dr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 106 AFKTFDDEGSGKIDEDYLRELLTT------MG--DRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHhcCccCCCccCHHHHHHHHHH------hc--ccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 999999999999999999999952 22 455578899999999999999999999999998
No 97
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=98.93 E-value=4.6e-09 Score=112.79 Aligned_cols=145 Identities=15% Similarity=0.136 Sum_probs=86.9
Q ss_pred CCccccceeccCCC--CCcEEEEEEec-----------CccchHHHHHhhhcCCCCCCCCCccccccCCCCCCCCEEEEe
Q 007179 446 PFEWHPFSITSAPD--DDYLSVHIRTL-----------GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLID 512 (614)
Q Consensus 446 ~~~~hpfTias~p~--~~~l~l~ir~~-----------g~~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~ 512 (614)
..+.|+|||+|+|. .+.+++.|+.. |-.|+.|.+..........+. +..... -.+...++.+.+.
T Consensus 175 ~~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~-~~~~~~-~~~~~~g~~v~v~ 252 (416)
T cd06204 175 RLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPT-PYYLSG-PRKKGGGSKVPVF 252 (416)
T ss_pred cCCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhccccccc-cccccc-ccccCCCCeEEEE
Confidence 34789999999995 46788888754 446777776543100000000 000000 0001136889999
Q ss_pred CccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhhc---------------cc-ch-hHHHHHhcccccCCCEE-E
Q 007179 513 GPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMK---------------AI-EE-EEENDLENGRDTGVNTT-I 574 (614)
Q Consensus 513 GPyG~~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~~---------------~~-~~-~~~~~l~~l~~~~~~~~-v 574 (614)
+|.|.+..+.....++||||||+||||++|++++...... +. .+ .+.+|++++.+.+.+.. .
T Consensus 253 ~~~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~~~~l~ 332 (416)
T cd06204 253 VRRSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESGKKVGPTLLFFGCRHPDEDFIYKDELEEYAKLGGLLELV 332 (416)
T ss_pred EecCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhccCccCCEEEEEcCCCCCcccchHHHHHHHHHcCCceEEE
Confidence 9999887544445799999999999999999998653211 11 12 35679988876665543 3
Q ss_pred EEecCCCCCCcccccccccCChHHH
Q 007179 575 IIIDNNYEPFFFWTQKKGPIQDKKS 599 (614)
Q Consensus 575 ~~~~~~~~~~~~w~g~~G~i~~~~~ 599 (614)
.+.+++.+ .+|+|++.+.
T Consensus 333 ~a~Sr~~~-------~k~yVq~~i~ 350 (416)
T cd06204 333 TAFSREQP-------KKVYVQHRLA 350 (416)
T ss_pred EEECcCCC-------CCcchHHHHH
Confidence 44454322 3466655443
No 98
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=98.91 E-value=7.1e-09 Score=110.99 Aligned_cols=125 Identities=18% Similarity=0.187 Sum_probs=82.0
Q ss_pred CccccceeccCCC--CCcEEEEEEec-------------CccchHHHHHhhhcCCCCCCCCCccccccCCCCCCCCEEEE
Q 007179 447 FEWHPFSITSAPD--DDYLSVHIRTL-------------GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLI 511 (614)
Q Consensus 447 ~~~hpfTias~p~--~~~l~l~ir~~-------------g~~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i 511 (614)
.+.|+|||+|+|. .+.+++.|+.. |-.|+.|.+ + ++ ++.+.+
T Consensus 175 l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~-l-------~~---------------Gd~v~v 231 (406)
T cd06202 175 LQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNG-L-------TP---------------GDTVPC 231 (406)
T ss_pred cCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHHh-C-------CC---------------CCEEEE
Confidence 4789999999985 46677777653 445666633 2 12 478888
Q ss_pred eCccC-CCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhh-------------------ccc--chhHHHHHhcccccC
Q 007179 512 DGPYG-APAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNM-------------------KAI--EEEEENDLENGRDTG 569 (614)
Q Consensus 512 ~GPyG-~~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~-------------------~~~--~~~~~~~l~~l~~~~ 569 (614)
.+|.| .+..+.....++|||||||||||++|++++..... ++. +..+.+|++.+.+.+
T Consensus 232 ~~~~~~~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~El~~~~~~~ 311 (406)
T cd06202 232 FVRSAPSFHLPEDPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKNKG 311 (406)
T ss_pred EEeeCCccCCCCCCCCCEEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHHHHHHHHcC
Confidence 77543 55543344578999999999999999999864321 111 113567999887766
Q ss_pred CCE-EEEEecCCCCCCcccccccccCChHHHH
Q 007179 570 VNT-TIIIIDNNYEPFFFWTQKKGPIQDKKSI 600 (614)
Q Consensus 570 ~~~-~v~~~~~~~~~~~~w~g~~G~i~~~~~~ 600 (614)
... .+.+.+++.. +.+|+|++.+.+
T Consensus 312 ~~~~~~~a~SR~~~------~~k~yVq~~l~~ 337 (406)
T cd06202 312 VLTEVYTALSREPG------KPKTYVQDLLKE 337 (406)
T ss_pred CCceEEEEEcCCCC------CCCeehhhHHHH
Confidence 653 4455565432 346888876654
No 99
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.87 E-value=5e-09 Score=86.37 Aligned_cols=67 Identities=16% Similarity=0.190 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcC-CCCCceeHHHHHHHHHhhhccCcccchhHHHH-HHHHHHHHHcCCCCCCceeHHHHHHHHHhC
Q 007179 46 SRLQTFFDMVDK-DADGRITEDEVREIISLSASANKLSNIQKQAE-EYAALIMEELDPDHLGCIMIDNLEMLLLQA 119 (614)
Q Consensus 46 ~kl~~~F~~~D~-d~dG~I~~~E~~~~l~~~~~~~~~~~~~~~~~-~~~~~lf~~~D~d~~G~It~eef~~~l~~~ 119 (614)
..+..+|+.||. |++|+|+.+||+.+++..+.+ .++ + ++++++|+.+|.|+||.|+|+||..++...
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~-~ls------~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPH-LLK------DVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhh-hcc------CHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 458899999999 999999999999999732221 122 2 678899999999999999999999988653
No 100
>PLN02964 phosphatidylserine decarboxylase
Probab=98.76 E-value=2.8e-08 Score=109.69 Aligned_cols=98 Identities=21% Similarity=0.355 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhcccCCCC-CcccHHHHHHHHHHhc-CCChHHH---HHHHHHHhcCCCCCceeHHHHHHHHHhhhccCcc
Q 007179 7 DFAVELFDALTRRRNIQG-DTITKDQLREFWDQIS-DQSFDSR---LQTFFDMVDKDADGRITEDEVREIISLSASANKL 81 (614)
Q Consensus 7 ~~~~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~~-~~~~~~k---l~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~ 81 (614)
+.+.+.|+.+| +|+ |.+ +..++..++ ..+++++ ++.+|+.+|.|+||.|+.+||..++.. +
T Consensus 143 ~elkeaF~lfD----~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~------l 208 (644)
T PLN02964 143 ESACESFDLLD----PSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKA------F 208 (644)
T ss_pred HHHHHHHHHHC----CCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHH------h
Confidence 34588899999 998 986 666777777 3555544 899999999999999999999999962 1
Q ss_pred cchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhCC
Q 007179 82 SNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAP 120 (614)
Q Consensus 82 ~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~~ 120 (614)
. +...+++++++|+.+|.|++|.|+++||++++...+
T Consensus 209 g--~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~~ 245 (644)
T PLN02964 209 G--NLVAANKKEELFKAADLNGDGVVTIDELAALLALQQ 245 (644)
T ss_pred c--cCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcc
Confidence 1 112356788999999999999999999999998865
No 101
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.69 E-value=4.1e-08 Score=81.05 Aligned_cols=70 Identities=21% Similarity=0.318 Sum_probs=55.5
Q ss_pred HHHHHHHHHhc-CCCCC-ceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHh
Q 007179 46 SRLQTFFDMVD-KDADG-RITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQ 118 (614)
Q Consensus 46 ~kl~~~F~~~D-~d~dG-~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~ 118 (614)
..++.+|+.|| .|+|| .|+.+||+.+|+..+++ -++ ....+++++++++.+|.|++|.|+|+||..++..
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~-~lg--~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSH-FLE--EIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHH-Hhc--CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 35889999998 79999 69999999999853321 122 1123567889999999999999999999988864
No 102
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.68 E-value=4.8e-08 Score=81.75 Aligned_cols=70 Identities=19% Similarity=0.328 Sum_probs=54.1
Q ss_pred HHHHHHHHhc-CCCCC-ceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhC
Q 007179 47 RLQTFFDMVD-KDADG-RITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQA 119 (614)
Q Consensus 47 kl~~~F~~~D-~d~dG-~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~ 119 (614)
.+..+|+.|| +|+|| +|+.+||+.+++..... .+. ....++.++++++++|.|+||.|+|+||..++...
T Consensus 11 ~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~-~~~--~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 11 TLIRIFHNYSGKEGDRYKLSKGELKELLQRELTD-FLS--SQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHH-hcc--cccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 4677899999 78998 59999999999742211 111 11235678899999999999999999999988653
No 103
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.66 E-value=6.3e-08 Score=75.53 Aligned_cols=60 Identities=28% Similarity=0.465 Sum_probs=52.5
Q ss_pred HHHHHHHHhcccCCCC-CcccHHHHHHHHHHhcCCC----hHHHHHHHHHHhcCCCCCceeHHHHHHHH
Q 007179 9 AVELFDALTRRRNIQG-DTITKDQLREFWDQISDQS----FDSRLQTFFDMVDKDADGRITEDEVREII 72 (614)
Q Consensus 9 ~~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~~~~~----~~~kl~~~F~~~D~d~dG~I~~~E~~~~l 72 (614)
++++|+.+| .|+ |.|+.+||..++..+.... .++.++.+|+.+|.|+||.|+.+||..++
T Consensus 2 l~~~F~~~D----~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFD----KDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHS----TTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHc----CCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 578999999 999 9999999999999887543 44667788999999999999999998764
No 104
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.65 E-value=1.1e-07 Score=89.09 Aligned_cols=97 Identities=16% Similarity=0.182 Sum_probs=83.5
Q ss_pred HHHHHHHHHhcccCCCC-CcccHHHHHHHHHHhcCCC-hHHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCcccchh
Q 007179 8 FAVELFDALTRRRNIQG-DTITKDQLREFWDQISDQS-FDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQ 85 (614)
Q Consensus 8 ~~~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~~~~~-~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~~~~ 85 (614)
.+...|...| .|+ |.|+-+|+.++++...... ..+.++.+..|+|.|.+|+|..+||+.+.+ .+....
T Consensus 58 ~~~~~f~~vD----~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~------~i~~Wr 127 (221)
T KOG0037|consen 58 QLAGWFQSVD----RDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWK------YINQWR 127 (221)
T ss_pred HHHHHHHhhC----ccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHH------HHHHHH
Confidence 4678899999 999 9999999999998765553 468899999999999999999999999996 344333
Q ss_pred HHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhCCcc
Q 007179 86 KQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQ 122 (614)
Q Consensus 86 ~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~~~~ 122 (614)
.+|+.+|+|++|.|+..|+++.+.+.--.
T Consensus 128 --------~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~ 156 (221)
T KOG0037|consen 128 --------NVFRTYDRDRSGTIDSSELRQALTQLGYR 156 (221)
T ss_pred --------HHHHhcccCCCCcccHHHHHHHHHHcCcC
Confidence 79999999999999999999999886533
No 105
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.56 E-value=2.2e-07 Score=94.26 Aligned_cols=61 Identities=20% Similarity=0.341 Sum_probs=49.9
Q ss_pred HHHHHHHHhcccCCCC-CcccHHHHHHHHHHhcCC-ChHHHHHHHHHHhcCCCCCceeHHHHHHHHH
Q 007179 9 AVELFDALTRRRNIQG-DTITKDQLREFWDQISDQ-SFDSRLQTFFDMVDKDADGRITEDEVREIIS 73 (614)
Q Consensus 9 ~~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~~~~-~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~ 73 (614)
++.+|+.+| .++ |.+|.+++.+.+.++... +..+.++.+|...|.|.||.+|.+||++.+.
T Consensus 16 ~~~lf~~lD----~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~ 78 (463)
T KOG0036|consen 16 IRCLFKELD----SKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLD 78 (463)
T ss_pred HHHHHHHhc----cCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHH
Confidence 688899999 877 999999999998887666 5566777788888888888888888887775
No 106
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.55 E-value=4.9e-07 Score=91.78 Aligned_cols=101 Identities=23% Similarity=0.354 Sum_probs=86.5
Q ss_pred chHHHHHHHHHHHhcccCCCC-CcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCccc
Q 007179 4 DSKDFAVELFDALTRRRNIQG-DTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLS 82 (614)
Q Consensus 4 ~~~~~~~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~~~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~ 82 (614)
...+.++.+|+.+| .|. |.+|++||...+.. .|.++..+|+..|.|+||.|+.+|+...++. ...++
T Consensus 48 ~~~~~~~~l~~~~d----~~~dg~vDy~eF~~Y~~~-----~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~--~gi~l- 115 (463)
T KOG0036|consen 48 PNYEAAKMLFSAMD----ANRDGRVDYSEFKRYLDN-----KELELYRIFQSIDLEHDGKIDPNEIWRYLKD--LGIQL- 115 (463)
T ss_pred CchHHHHHHHHhcc----cCcCCcccHHHHHHHHHH-----hHHHHHHHHhhhccccCCccCHHHHHHHHHH--hCCcc-
Confidence 34566899999999 999 99999999999875 4778999999999999999999999988862 11223
Q ss_pred chhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhCCc
Q 007179 83 NIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPA 121 (614)
Q Consensus 83 ~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~~~ 121 (614)
.++.++++|+..|+|+++.|+++|+++.+.-+|+
T Consensus 116 -----~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p~ 149 (463)
T KOG0036|consen 116 -----SDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYPE 149 (463)
T ss_pred -----CHHHHHHHHHHhccCCCeeeccHHHHhhhhcCCh
Confidence 3677888999999999999999999999998884
No 107
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.53 E-value=2.1e-07 Score=77.82 Aligned_cols=72 Identities=19% Similarity=0.331 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhc-CCCCC-ceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhC
Q 007179 45 DSRLQTFFDMVD-KDADG-RITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQA 119 (614)
Q Consensus 45 ~~kl~~~F~~~D-~d~dG-~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~ 119 (614)
.+.++.+|+.|| .|++| .|+.+|++.+++..+.. .++ ....++.++.+|+.+|.|++|.|+|+||..++...
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~-~~~--~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSD-FLD--AQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHH-Hcc--CCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 467899999997 99999 59999999999632211 011 01235678899999999999999999999988753
No 108
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.53 E-value=5e-07 Score=84.99 Aligned_cols=102 Identities=19% Similarity=0.212 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHhcccCCCC--CcccHHHHHHHHHHhcC-CChHHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCccc
Q 007179 6 KDFAVELFDALTRRRNIQG--DTITKDQLREFWDQISD-QSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLS 82 (614)
Q Consensus 6 ~~~~~~~f~~~D~~~~~~~--G~I~~~ef~~~l~~~~~-~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~ 82 (614)
+..++.+++.|- .+- |.++.++|..++.++.+ ++++.-.+.+|+.+|.|+||.|++.||...+.....+
T Consensus 25 ~~ei~~~Yr~Fk----~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rG---- 96 (193)
T KOG0044|consen 25 KKEIQQWYRGFK----NECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRG---- 96 (193)
T ss_pred HHHHHHHHHHhc----ccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCC----
Confidence 445788898887 443 99999999999999875 6788889999999999999999999976666422211
Q ss_pred chhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhC
Q 007179 83 NIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQA 119 (614)
Q Consensus 83 ~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~ 119 (614)
..++-++=.|+.+|.|+||+||++|+..+++..
T Consensus 97 ----t~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i 129 (193)
T KOG0044|consen 97 ----TLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAI 129 (193)
T ss_pred ----cHHHHhhhhheeecCCCCceEcHHHHHHHHHHH
Confidence 123344466999999999999999999888754
No 109
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.50 E-value=2.3e-07 Score=76.63 Aligned_cols=67 Identities=18% Similarity=0.281 Sum_probs=52.9
Q ss_pred HHHHHHHHhcC-CC-CCceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHh
Q 007179 47 RLQTFFDMVDK-DA-DGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQ 118 (614)
Q Consensus 47 kl~~~F~~~D~-d~-dG~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~ 118 (614)
.+-.+|+.||. |+ +|+|+.+||+++++...+ +. +...+++++++|+.+|.|++|.|+|+||..++..
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~---lg--~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKELIQKELT---IG--SKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHHh---cC--CCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 46679999998 77 899999999999962111 11 1223567889999999999999999999988764
No 110
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.47 E-value=6.9e-07 Score=83.70 Aligned_cols=97 Identities=18% Similarity=0.319 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHhcccCCCC-CcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCcccch
Q 007179 6 KDFAVELFDALTRRRNIQG-DTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNI 84 (614)
Q Consensus 6 ~~~~~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~~~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~~~ 84 (614)
.+-++-+...|| .+. |+|+++||+..++.+ ...+.+|+-||.|++|.|+..||+..+.. +..
T Consensus 93 ~~TcrlmI~mfd----~~~~G~i~f~EF~~Lw~~i------~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~------~Gy- 155 (221)
T KOG0037|consen 93 IETCRLMISMFD----RDNSGTIGFKEFKALWKYI------NQWRNVFRTYDRDRSGTIDSSELRQALTQ------LGY- 155 (221)
T ss_pred HHHHHHHHHHhc----CCCCCccCHHHHHHHHHHH------HHHHHHHHhcccCCCCcccHHHHHHHHHH------cCc-
Confidence 455678889999 888 999999999999875 35899999999999999999999999862 221
Q ss_pred hHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhCC
Q 007179 85 QKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAP 120 (614)
Q Consensus 85 ~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~~ 120 (614)
...++..+.+++++|...+|.|+|++|.+.+..-.
T Consensus 156 -~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~ 190 (221)
T KOG0037|consen 156 -RLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQ 190 (221)
T ss_pred -CCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHH
Confidence 12256777899999988899999999998876543
No 111
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=98.47 E-value=2.2e-07 Score=80.30 Aligned_cols=71 Identities=20% Similarity=0.309 Sum_probs=52.5
Q ss_pred EEEeCcCHHHHHHHHHHHHHhhcccc-----------h-hHHHHHhcccccCCC-EEEEEecCCCCCCcccccccccCCh
Q 007179 530 LVGLGIGATPMISIVKDIVNNMKAIE-----------E-EEENDLENGRDTGVN-TTIIIIDNNYEPFFFWTQKKGPIQD 596 (614)
Q Consensus 530 lIagG~GItp~~s~l~~l~~~~~~~~-----------~-~~~~~l~~l~~~~~~-~~v~~~~~~~~~~~~w~g~~G~i~~ 596 (614)
|||||+||||++|+++++++.....+ + .+.++++.+.+..++ ..++.++++.+. |.+..|+|++
T Consensus 1 lIagGtGIaP~~s~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~v~~ 77 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLERNDNRKVTLFYGARTPEDLLFRDELEALAQEYPNRFHVVYVSSPDDG---WDGFKGRVTD 77 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHHTCTSEEEEEEEESSGGGSTTHHHHHHHHHHSTTCEEEEEETTTTSS---TTSEESSHHH
T ss_pred CeecceeHHHHHHHHHHHHHhCCCCCEEEEEEEcccccccchhHHHHHHhhcccccccccccccccc---cCCceeehhH
Confidence 79999999999999999997733222 2 356789988877776 444444555555 8999999999
Q ss_pred HHHHHhh
Q 007179 597 KKSILLL 603 (614)
Q Consensus 597 ~~~~~~~ 603 (614)
...+.+.
T Consensus 78 ~~~~~~~ 84 (109)
T PF00175_consen 78 LLLEDLL 84 (109)
T ss_dssp HHHHHHH
T ss_pred HHHHhhc
Confidence 9865443
No 112
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.46 E-value=6.2e-07 Score=75.32 Aligned_cols=72 Identities=17% Similarity=0.237 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhcC-CC-CCceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhC
Q 007179 45 DSRLQTFFDMVDK-DA-DGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQA 119 (614)
Q Consensus 45 ~~kl~~~F~~~D~-d~-dG~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~ 119 (614)
...++.+|+.||. |+ +|.|+.+|++.+++..... .++ ....++.++.+++.+|.|++|.|+|+||..++...
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~-~lg--~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSE-FLK--NQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHH-Hhh--ccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4568899999997 97 7999999999998632110 011 12235678899999999999999999999988653
No 113
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.46 E-value=7.7e-07 Score=75.10 Aligned_cols=66 Identities=21% Similarity=0.309 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhCC
Q 007179 45 DSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAP 120 (614)
Q Consensus 45 ~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~~ 120 (614)
.++++.+|+.+|.|++|.|+.+|++.+++. .+++ ++.++++++.+|.+++|.|+++||..++....
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~----~~~~------~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~ 74 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLK----SGLP------QTLLAKIWNLADIDNDGELDKDEFALAMHLIY 74 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHH----cCCC------HHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHH
Confidence 467899999999999999999999999973 1222 45677899999999999999999998886543
No 114
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.44 E-value=5.6e-07 Score=74.43 Aligned_cols=70 Identities=16% Similarity=0.229 Sum_probs=53.5
Q ss_pred HHHHHHHHH-hcCCCCC-ceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHh
Q 007179 46 SRLQTFFDM-VDKDADG-RITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQ 118 (614)
Q Consensus 46 ~kl~~~F~~-~D~d~dG-~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~ 118 (614)
+.+..+|+. .|+||+| .|+++||+.+++...+.- +. ....+..++++++++|.|+||.|+|+||..++..
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~-~~--~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASF-TK--NQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHh-hc--CCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 457889999 6788886 999999999998432210 11 1112467788999999999999999999988865
No 115
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.41 E-value=7.4e-07 Score=73.51 Aligned_cols=64 Identities=20% Similarity=0.363 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhcccCC-CC-CcccHHHHHHHHHH-hcCCChH-HHHHHHHHHhcCCCCCceeHHHHHHHHH
Q 007179 6 KDFAVELFDALTRRRNI-QG-DTITKDQLREFWDQ-ISDQSFD-SRLQTFFDMVDKDADGRITEDEVREIIS 73 (614)
Q Consensus 6 ~~~~~~~f~~~D~~~~~-~~-G~I~~~ef~~~l~~-~~~~~~~-~kl~~~F~~~D~d~dG~I~~~E~~~~l~ 73 (614)
.+-+.++|+.+| . ++ |+|+.+||..+|.. ++...++ +.++.+++..|.|+||.|+++||..++.
T Consensus 7 i~~l~~~F~~fd----~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~ 74 (89)
T cd05022 7 IETLVSNFHKAS----VKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIG 74 (89)
T ss_pred HHHHHHHHHHHh----CCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 345789999999 8 78 99999999999988 7655445 8899999999999999999999999886
No 116
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.40 E-value=9.1e-07 Score=69.01 Aligned_cols=61 Identities=25% Similarity=0.355 Sum_probs=51.1
Q ss_pred HHHHHHhcCCCCCceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhC
Q 007179 49 QTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQA 119 (614)
Q Consensus 49 ~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~ 119 (614)
+.+|+.+|.|++|.|+.+|++.+++. .+. .++.++.+++.+|.+++|.|+++||..++...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~----~g~------~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGK----SGL------PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHH----cCC------CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 56899999999999999999999863 112 24567889999999999999999999988653
No 117
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.38 E-value=9.1e-07 Score=76.70 Aligned_cols=66 Identities=20% Similarity=0.281 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhCCcc
Q 007179 44 FDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQ 122 (614)
Q Consensus 44 ~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~~~~ 122 (614)
-.+++..+|+.+|.|+||.|+.+|+..+.. . ..+..++.+|+.+|.|+||.||++||...+ ..++.
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~l--------~----~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl-~~~~~ 111 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIRL--------D----PNEHCIKPFFESCDLDKDGSISLDEWCYCF-IKEDD 111 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHHc--------c----chHHHHHHHHHHHCCCCCCCCCHHHHHHHH-hChhh
Confidence 357899999999999999999999997751 1 114456689999999999999999999998 44433
No 118
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.36 E-value=1.2e-06 Score=72.71 Aligned_cols=72 Identities=15% Similarity=0.251 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhcC--CCCCceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhC
Q 007179 45 DSRLQTFFDMVDK--DADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQA 119 (614)
Q Consensus 45 ~~kl~~~F~~~D~--d~dG~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~ 119 (614)
.++++.+|+.||. |++|.|+.+|+..+++..... ..+ ....++.++.+++.+|.+++|.|+|+||..++...
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~-~~~--~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELPN-FLK--NQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhh-hcc--CCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 3568889999999 899999999999999631211 111 11235678889999999999999999999988653
No 119
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.23 E-value=4.5e-06 Score=70.41 Aligned_cols=66 Identities=20% Similarity=0.289 Sum_probs=57.6
Q ss_pred CcchHHHHHHHHHHHhcccCCCC-CcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCceeHHHHHHHHH
Q 007179 2 NKDSKDFAVELFDALTRRRNIQG-DTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 73 (614)
Q Consensus 2 ~~~~~~~~~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~~~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~ 73 (614)
+.+..+.++++|+.+| .++ |.|+.+|+..+|...+ .++++++.+|+.+|.|++|.|+++||..++.
T Consensus 5 s~~~~~~l~~~F~~~D----~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~ 71 (96)
T smart00027 5 SPEDKAKYEQIFRSLD----KNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMH 71 (96)
T ss_pred CHHHHHHHHHHHHHhC----CCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHH
Confidence 4445556799999999 999 9999999999998853 4677899999999999999999999998886
No 120
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.22 E-value=3.6e-06 Score=62.65 Aligned_cols=49 Identities=22% Similarity=0.416 Sum_probs=45.5
Q ss_pred CcccHHHHHHHHHHhcCC-ChHHHHHHHHHHhcCCCCCceeHHHHHHHHH
Q 007179 25 DTITKDQLREFWDQISDQ-SFDSRLQTFFDMVDKDADGRITEDEVREIIS 73 (614)
Q Consensus 25 G~I~~~ef~~~l~~~~~~-~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~ 73 (614)
|.||.+||..++..++.. .++++++.+|+.+|.|+||.|+.+||..+++
T Consensus 3 G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 3 GKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 899999999999888777 7788899999999999999999999999885
No 121
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.20 E-value=1.3e-05 Score=69.53 Aligned_cols=112 Identities=15% Similarity=0.181 Sum_probs=89.5
Q ss_pred cchHHHHHHHHHHHhcccCCCC-CcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCC--CCCceeHHHHHHHHHhhhccC
Q 007179 3 KDSKDFAVELFDALTRRRNIQG-DTITKDQLREFWDQISDQSFDSRLQTFFDMVDKD--ADGRITEDEVREIISLSASAN 79 (614)
Q Consensus 3 ~~~~~~~~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~~~~~~~~kl~~~F~~~D~d--~dG~I~~~E~~~~l~~~~~~~ 79 (614)
.+..+..+++|..|| ..+ |+|+..+.-.+|+.++.++++.++......++.+ +-..|++++|.-++.....+.
T Consensus 7 ~d~~~e~ke~F~lfD----~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk 82 (152)
T KOG0030|consen 7 PDQMEEFKEAFLLFD----RTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNK 82 (152)
T ss_pred cchHHHHHHHHHHHh----ccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhcc
Confidence 445556799999999 888 9999999999999999999999999999999887 557899999998886322221
Q ss_pred cccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhCCccc
Q 007179 80 KLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQS 123 (614)
Q Consensus 80 ~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~~~~~ 123 (614)
+ +-..++.++ -++.+|++++|.|...|++++|...-+.+
T Consensus 83 ~----q~t~edfve-gLrvFDkeg~G~i~~aeLRhvLttlGekl 121 (152)
T KOG0030|consen 83 D----QGTYEDFVE-GLRVFDKEGNGTIMGAELRHVLTTLGEKL 121 (152)
T ss_pred c----cCcHHHHHH-HHHhhcccCCcceeHHHHHHHHHHHHhhc
Confidence 1 122344444 47889999999999999999998876554
No 122
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.19 E-value=6.1e-06 Score=71.56 Aligned_cols=95 Identities=16% Similarity=0.323 Sum_probs=70.7
Q ss_pred HHHHHHHHhcccCCC--C-CcccHHHHHHHHHHhcCC---ChHHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCccc
Q 007179 9 AVELFDALTRRRNIQ--G-DTITKDQLREFWDQISDQ---SFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLS 82 (614)
Q Consensus 9 ~~~~f~~~D~~~~~~--~-G~I~~~ef~~~l~~~~~~---~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~ 82 (614)
+.+.-...+ .+ + ..|+|++|+-++.++++. .+-+..-.-.+.||++++|.|...|+++++. .++
T Consensus 49 V~k~l~~~~----~~~~~~~rl~FE~fLpm~q~vaknk~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLt------tlG 118 (152)
T KOG0030|consen 49 VLKVLGQPK----RREMNVKRLDFEEFLPMYQQVAKNKDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLT------TLG 118 (152)
T ss_pred HHHHHcCcc----cchhhhhhhhHHHHHHHHHHHHhccccCcHHHHHHHHHhhcccCCcceeHHHHHHHHH------HHH
Confidence 455555555 44 4 789999999999887654 3345666678999999999999999999995 233
Q ss_pred chhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHH
Q 007179 83 NIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLL 116 (614)
Q Consensus 83 ~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l 116 (614)
+...+++++.+..-. .|.+|.|+||+|.+.+
T Consensus 119 --ekl~eeEVe~Llag~-eD~nG~i~YE~fVk~i 149 (152)
T KOG0030|consen 119 --EKLTEEEVEELLAGQ-EDSNGCINYEAFVKHI 149 (152)
T ss_pred --hhccHHHHHHHHccc-cccCCcCcHHHHHHHH
Confidence 444566777776532 3678999999998754
No 123
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.18 E-value=2.6e-06 Score=83.74 Aligned_cols=104 Identities=12% Similarity=0.077 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhcccCCCC-CcccHHHHHHHHHHhcCC-ChHHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCcccch
Q 007179 7 DFAVELFDALTRRRNIQG-DTITKDQLREFWDQISDQ-SFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNI 84 (614)
Q Consensus 7 ~~~~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~~~~-~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~~~ 84 (614)
+.++.+|..|| +++ |.+|+.|....+..++.. .+.+-++..|++||.+.||.+..++|..+++..+....+.
T Consensus 259 d~l~~~f~LFd----e~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~~l~-- 332 (412)
T KOG4666|consen 259 DKLAPTFMLFD----EGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVEVLR-- 332 (412)
T ss_pred hhhhhhhheec----CCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCcceee--
Confidence 34688999999 988 999999999999876554 6788999999999999999999999999998433323333
Q ss_pred hHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhCCccc
Q 007179 85 QKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQS 123 (614)
Q Consensus 85 ~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~~~~~ 123 (614)
+-.+|+..+..+||+|++++|++++..+|++.
T Consensus 333 -------v~~lf~~i~q~d~~ki~~~~f~~fa~~~p~~a 364 (412)
T KOG4666|consen 333 -------VPVLFPSIEQKDDPKIYASNFRKFAATEPNLA 364 (412)
T ss_pred -------ccccchhhhcccCcceeHHHHHHHHHhCchhh
Confidence 22689999999999999999999999999874
No 124
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.18 E-value=6.7e-06 Score=67.87 Aligned_cols=68 Identities=16% Similarity=0.322 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhcccCCCC--CcccHHHHHHHHHH---hcCCChHHHHHHHHHHhcCCCCCceeHHHHHHHHH
Q 007179 6 KDFAVELFDALTRRRNIQG--DTITKDQLREFWDQ---ISDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 73 (614)
Q Consensus 6 ~~~~~~~f~~~D~~~~~~~--G~I~~~ef~~~l~~---~~~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~ 73 (614)
++-+..+.+.|++++..++ |+|+.+||..++.+ ++...+++++..+|+..|.|++|.|+++||..++.
T Consensus 6 e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~ 78 (88)
T cd05029 6 DQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLG 78 (88)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHH
Confidence 3334555555555554344 89999999999964 56667889999999999999999999999988885
No 125
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.18 E-value=4.8e-06 Score=68.86 Aligned_cols=71 Identities=13% Similarity=0.288 Sum_probs=53.9
Q ss_pred HHHHHHHHHhcCC--CCCceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhC
Q 007179 46 SRLQTFFDMVDKD--ADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQA 119 (614)
Q Consensus 46 ~kl~~~F~~~D~d--~dG~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~ 119 (614)
+.+-..|+.|+.+ ++|.|+.+||+.++...... .++ ....++.++.+|+.+|.|++|.|+|+||..++...
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~-~~t--~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPN-FLK--KEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhH-hhc--cCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4577899999876 47899999999999632111 010 11126788899999999999999999999988753
No 126
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.17 E-value=2.7e-06 Score=64.49 Aligned_cols=61 Identities=30% Similarity=0.424 Sum_probs=50.1
Q ss_pred HHHHHHHhcCCCCCceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHH
Q 007179 48 LQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLL 116 (614)
Q Consensus 48 l~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l 116 (614)
++.+|+.+|.|++|.|+.+|+..+++... . ...++.+..+|+.+|.+++|.|+++||..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~----~----~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLG----E----GLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhC----C----CCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 57889999999999999999999997321 1 1124566789999999999999999998765
No 127
>PLN02964 phosphatidylserine decarboxylase
Probab=98.17 E-value=3.7e-06 Score=93.10 Aligned_cols=64 Identities=16% Similarity=0.364 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhcccCCCC-CcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCceeHHHHHHHHHh
Q 007179 7 DFAVELFDALTRRRNIQG-DTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISL 74 (614)
Q Consensus 7 ~~~~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~~~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~ 74 (614)
.+++++|+.+| .|+ |.|+++||+.++..++...++++++.+|+.+|.|+||+|+.+||+.+++.
T Consensus 179 ~fi~~mf~~~D----~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 179 SFARRILAIVD----YDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHHhC----CCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 35899999999 999 99999999999998887788999999999999999999999999999974
No 128
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.16 E-value=7.3e-06 Score=67.65 Aligned_cols=64 Identities=16% Similarity=0.370 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhcccCCCC-C-cccHHHHHHHHHH-----hcCCChHHHHHHHHHHhcCCCCCceeHHHHHHHHH
Q 007179 7 DFAVELFDALTRRRNIQG-D-TITKDQLREFWDQ-----ISDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 73 (614)
Q Consensus 7 ~~~~~~f~~~D~~~~~~~-G-~I~~~ef~~~l~~-----~~~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~ 73 (614)
..+.++|+.+| +.++ | .|+.+|+..+|.. ++...++++++.+++..|.|+||.|+++||..++.
T Consensus 8 ~~l~~aF~~fD---~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~ 78 (88)
T cd05027 8 VALIDVFHQYS---GREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVA 78 (88)
T ss_pred HHHHHHHHHhc---ccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 34678888886 1467 8 6999999999998 77777788899999999999999999999998885
No 129
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.15 E-value=7.7e-06 Score=60.86 Aligned_cols=53 Identities=32% Similarity=0.475 Sum_probs=42.1
Q ss_pred CCCceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHh
Q 007179 59 ADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQ 118 (614)
Q Consensus 59 ~dG~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~ 118 (614)
.+|.|+.+||+.+++. +..+.++ +++++.+|..+|.|++|.|+++||..++.+
T Consensus 1 ~~G~i~~~~~~~~l~~-~g~~~~s------~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSK-LGIKDLS------EEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHH-TTSSSSC------HHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHH-hCCCCCC------HHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 4799999999999952 2111133 556889999999999999999999998864
No 130
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.15 E-value=8.6e-06 Score=61.65 Aligned_cols=60 Identities=27% Similarity=0.454 Sum_probs=54.9
Q ss_pred HHHHHHHHhcccCCCC-CcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCceeHHHHHHHH
Q 007179 9 AVELFDALTRRRNIQG-DTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREII 72 (614)
Q Consensus 9 ~~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~~~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l 72 (614)
++.+|+.+| .++ |.|+++||..++..++...+++.+..+|+.+|.+++|.|+.+||..++
T Consensus 2 ~~~~f~~~d----~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFD----KDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhC----CCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 467899999 888 999999999999999888888999999999999999999999998765
No 131
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.09 E-value=1.2e-05 Score=67.20 Aligned_cols=65 Identities=17% Similarity=0.387 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHH-hcccCCCC-C-cccHHHHHHHHHH-hc----CCChHHHHHHHHHHhcCCCCCceeHHHHHHHHH
Q 007179 5 SKDFAVELFDAL-TRRRNIQG-D-TITKDQLREFWDQ-IS----DQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 73 (614)
Q Consensus 5 ~~~~~~~~f~~~-D~~~~~~~-G-~I~~~ef~~~l~~-~~----~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~ 73 (614)
..+.+.++|+.+ | .++ | .|+.+|+..+|+. ++ ...+++.++.+|+.+|.|++|.|+++||..++.
T Consensus 7 ~~~~l~~~F~~fDd----~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~ 79 (92)
T cd05025 7 AMETLINVFHAHSG----KEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVA 79 (92)
T ss_pred HHHHHHHHHHHHhc----ccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 345578999999 5 777 9 5999999999975 43 235678899999999999999999999998886
No 132
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.08 E-value=9.3e-06 Score=63.22 Aligned_cols=58 Identities=26% Similarity=0.445 Sum_probs=52.2
Q ss_pred HHHHHHHhcccCCCC-CcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCceeHHHHHHHHH
Q 007179 10 VELFDALTRRRNIQG-DTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 73 (614)
Q Consensus 10 ~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~~~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~ 73 (614)
+++|+.+| +++ |.|+.+|+..++...+. +++.++.+|+.+|.|++|.|+.+||..++.
T Consensus 2 ~~~F~~~D----~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~ 60 (67)
T cd00052 2 DQIFRSLD----PDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMH 60 (67)
T ss_pred hHHHHHhC----CCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHH
Confidence 57899999 999 99999999999988753 677899999999999999999999988875
No 133
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.04 E-value=2e-05 Score=65.91 Aligned_cols=62 Identities=16% Similarity=0.346 Sum_probs=49.7
Q ss_pred HHHHHHHHhcccCCCC-C-cccHHHHHHHHHHh-----cCCChHHHHHHHHHHhcCCCCCceeHHHHHHHHH
Q 007179 9 AVELFDALTRRRNIQG-D-TITKDQLREFWDQI-----SDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 73 (614)
Q Consensus 9 ~~~~f~~~D~~~~~~~-G-~I~~~ef~~~l~~~-----~~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~ 73 (614)
+.++|+.+| ++|+ | +|+.+||..++... .....++.+..+++..|.|+||.|+++||..++.
T Consensus 12 ~~~~F~~~d---d~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~ 80 (93)
T cd05026 12 LIRIFHNYS---GKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVA 80 (93)
T ss_pred HHHHHHHHH---ccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence 455677666 3456 6 69999999999762 2334667899999999999999999999999986
No 134
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.04 E-value=7.2e-06 Score=52.27 Aligned_cols=27 Identities=37% Similarity=0.658 Sum_probs=24.8
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHH
Q 007179 47 RLQTFFDMVDKDADGRITEDEVREIIS 73 (614)
Q Consensus 47 kl~~~F~~~D~d~dG~I~~~E~~~~l~ 73 (614)
+++.+|+.+|+|+||+|+++||+.+++
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 478899999999999999999999886
No 135
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=3.5e-05 Score=76.57 Aligned_cols=102 Identities=19% Similarity=0.164 Sum_probs=75.9
Q ss_pred HHHHHHHHhcccCCCC-CcccHHHHHHHHHHhcC------C--C--hHH----HHHHHHHHhcCCCCCceeHHHHHHHHH
Q 007179 9 AVELFDALTRRRNIQG-DTITKDQLREFWDQISD------Q--S--FDS----RLQTFFDMVDKDADGRITEDEVREIIS 73 (614)
Q Consensus 9 ~~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~~~------~--~--~~~----kl~~~F~~~D~d~dG~I~~~E~~~~l~ 73 (614)
..+-|...| .+. |.|+++|++..+..... . + +.. +=+.-|++-|.|+||.++++||..++.
T Consensus 115 ~~~~~~~~d----~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLH 190 (325)
T KOG4223|consen 115 AARRWDEYD----KNKDGFITWEEYLPQTYGRVDLPDEFPDEEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLH 190 (325)
T ss_pred HHHHHHHhc----cCccceeeHHHhhhhhhhcccCccccccchhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccC
Confidence 455566667 788 99999999998864311 0 0 111 124679999999999999999999884
Q ss_pred hhhccCcccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhCCc
Q 007179 74 LSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPA 121 (614)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~~~ 121 (614)
...-+.+.+-++.+-++..|+|+||+|+++||..=|-++..
T Consensus 191 -------PEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~ 231 (325)
T KOG4223|consen 191 -------PEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEG 231 (325)
T ss_pred -------hhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccC
Confidence 11124555667788899999999999999999987776654
No 136
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.99 E-value=2.4e-05 Score=65.68 Aligned_cols=62 Identities=13% Similarity=0.348 Sum_probs=53.1
Q ss_pred HHHHHHHHHhcccCC-C-C-CcccHHHHHHHHHH-----hcCCChHHHHHHHHHHhcCCCCCceeHHHHHHHHH
Q 007179 8 FAVELFDALTRRRNI-Q-G-DTITKDQLREFWDQ-----ISDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 73 (614)
Q Consensus 8 ~~~~~f~~~D~~~~~-~-~-G~I~~~ef~~~l~~-----~~~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~ 73 (614)
.+.++|+.+| . | + |.|+.+|+..++.. ++...++++++.+++.+|.|++|.|+++||..++.
T Consensus 9 ~l~~~F~~~D----~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~ 78 (94)
T cd05031 9 SLILTFHRYA----GKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVA 78 (94)
T ss_pred HHHHHHHHHh----ccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 3678888888 6 6 3 99999999999986 34455778999999999999999999999998886
No 137
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.98 E-value=9.4e-06 Score=51.72 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=25.0
Q ss_pred HHHHHHHcCCCCCCceeHHHHHHHHHh
Q 007179 92 AALIMEELDPDHLGCIMIDNLEMLLLQ 118 (614)
Q Consensus 92 ~~~lf~~~D~d~~G~It~eef~~~l~~ 118 (614)
++++|+.+|+|+||+||++||+.++++
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 568999999999999999999999875
No 138
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=1.7e-05 Score=78.77 Aligned_cols=100 Identities=20% Similarity=0.276 Sum_probs=73.7
Q ss_pred HHHHHHHHhcccCCCC-CcccHHHHHHHHHHhcCCChH-----HHHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCccc
Q 007179 9 AVELFDALTRRRNIQG-DTITKDQLREFWDQISDQSFD-----SRLQTFFDMVDKDADGRITEDEVREIISLSASANKLS 82 (614)
Q Consensus 9 ~~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~~~~~~~-----~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~ 82 (614)
+++-...+| +|+ |+|+++||+.-|.......++ .+-..++..+|+|+||+++.+|++.-+. +
T Consensus 202 i~Etl~d~D----kn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~~WI~--------P 269 (325)
T KOG4223|consen 202 IAETLEDID----KNGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQFFEFRDKNKDGKLDGDELLDWIL--------P 269 (325)
T ss_pred HHHHHhhcc----cCCCCceeHHHHHhHHhhccCCCCCcccccccHHHHHHHhhcCCCCccCHHHHhcccC--------C
Confidence 445556677 999 999999999988765432221 2334788999999999999999986652 1
Q ss_pred chhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhCCcccc
Q 007179 83 NIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQSV 124 (614)
Q Consensus 83 ~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~~~~~~ 124 (614)
....-.+.+++.++-++|.|+||.+|++|... ++..+.
T Consensus 270 ~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~----~~d~Fv 307 (325)
T KOG4223|consen 270 SEQDHAKAEARHLLHEADEDKDGKLSKEEILE----HYDVFV 307 (325)
T ss_pred CCccHHHHHHHHHhhhhccCccccccHHHHhh----Ccceee
Confidence 11334577888999999999999999998643 555443
No 139
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=97.97 E-value=4.2e-05 Score=84.48 Aligned_cols=104 Identities=16% Similarity=0.192 Sum_probs=69.5
Q ss_pred CccccceeccCCC--CCcEEEEEEec----------CccchHHHHHhhhcCCCCCCCCCccccccCCCCCCCCEEEEeCc
Q 007179 447 FEWHPFSITSAPD--DDYLSVHIRTL----------GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGP 514 (614)
Q Consensus 447 ~~~hpfTias~p~--~~~l~l~ir~~----------g~~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GP 514 (614)
...|-|||+|+|. .+.+.++|..+ |..|..|.+... .++.+.|...
T Consensus 371 lkPR~YSIsSs~~~~~~~vhltV~vV~y~~~~~~r~GvcS~~L~~~~~----------------------~g~~i~v~v~ 428 (587)
T COG0369 371 LKPRLYSIASSPGVSPDEVHLTVGVVRYQAEGRERYGVCSGYLADLLE----------------------EGDTIPVFVQ 428 (587)
T ss_pred CCCeeeEeccCCCCCCCeEEEEEEEEEeccCCCcccccchHHHHhhhc----------------------CCCeEEEEec
Confidence 3568899999995 35566666544 223444544431 1467777777
Q ss_pred cC-CCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHhhcccch-------------hHHHHHhcccccCCCE
Q 007179 515 YG-APAQDYKEYEVVLLVGLGIGATPMISIVKDIVNNMKAIEE-------------EEENDLENGRDTGVNT 572 (614)
Q Consensus 515 yG-~~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~~~~~~~-------------~~~~~l~~l~~~~~~~ 572 (614)
-+ .+..+.....+++|||.||||||+.+++++-.......+. .+.+|+++..+.+..+
T Consensus 429 ~n~nf~lp~~~~~PiIMIG~GTGIAPFRafvq~r~~~~~~gk~wLfFG~R~~~~DfLY~~Ewe~~~~~G~~~ 500 (587)
T COG0369 429 PNKNFRLPEDPETPIIMIGPGTGIAPFRAFVQERAANGAEGKNWLFFGCRHFTEDFLYQEEWEEYLKDGVLT 500 (587)
T ss_pred cCCccccCCCCCCceEEEcCCCCchhHHHHHHHHHhccccCceEEEecCCCCccchhhHHHHHHHHhcCCce
Confidence 77 4544444448999999999999999999998776554322 3556888776666443
No 140
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.95 E-value=6.3e-05 Score=77.01 Aligned_cols=101 Identities=19% Similarity=0.255 Sum_probs=73.9
Q ss_pred HHHHHHHHhcccCCCC-CcccHHHHHHHHHHhc--------------CCCh-----------------------------
Q 007179 9 AVELFDALTRRRNIQG-DTITKDQLREFWDQIS--------------DQSF----------------------------- 44 (614)
Q Consensus 9 ~~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~~--------------~~~~----------------------------- 44 (614)
+++-|+..| .++ |+|+...+..+|+... ..+.
T Consensus 466 L~~eF~~~D----~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvet 541 (631)
T KOG0377|consen 466 LEDEFRKYD----PKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVET 541 (631)
T ss_pred HHHHHHhcC----hhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHH
Confidence 566677777 777 9999999999997641 0000
Q ss_pred ----HHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHH
Q 007179 45 ----DSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLL 117 (614)
Q Consensus 45 ----~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~ 117 (614)
...+..+|+..|.|++|.|+.+||+...+..-+..... ..++.+.++-+.+|.|+||.|+++||.+.+.
T Consensus 542 LYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~----i~~~~i~~la~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 542 LYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGA----ISDDEILELARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred HHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCC----cCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Confidence 12356799999999999999999999998433222111 1134455667778999999999999988775
No 141
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=97.93 E-value=3.1e-05 Score=64.06 Aligned_cols=63 Identities=17% Similarity=0.368 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhcccCC--CC-CcccHHHHHHHHHH-hcCC----ChHHHHHHHHHHhcCCCCCceeHHHHHHHHH
Q 007179 7 DFAVELFDALTRRRNI--QG-DTITKDQLREFWDQ-ISDQ----SFDSRLQTFFDMVDKDADGRITEDEVREIIS 73 (614)
Q Consensus 7 ~~~~~~f~~~D~~~~~--~~-G~I~~~ef~~~l~~-~~~~----~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~ 73 (614)
+.++++|..+| . ++ |.|+.+|+..++.. ++.. ..+++++.+++.+|.|++|.|+.+||..++.
T Consensus 8 ~~l~~~F~~~D----~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~ 78 (88)
T cd00213 8 ETIIDVFHKYS----GKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIG 78 (88)
T ss_pred HHHHHHHHHHh----hccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHH
Confidence 33688999999 8 68 99999999999976 3322 2478899999999999999999999998885
No 142
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=97.93 E-value=6.4e-05 Score=70.84 Aligned_cols=98 Identities=19% Similarity=0.241 Sum_probs=73.6
Q ss_pred HHHHHHHHhcccCCC-C-CcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCc-eeHHHHHHHHHhhhccCcccchh
Q 007179 9 AVELFDALTRRRNIQ-G-DTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGR-ITEDEVREIISLSASANKLSNIQ 85 (614)
Q Consensus 9 ~~~~f~~~D~~~~~~-~-G~I~~~ef~~~l~~~~~~~~~~kl~~~F~~~D~d~dG~-I~~~E~~~~l~~~~~~~~~~~~~ 85 (614)
+...|..+| .+ + |.++.+||..+.... .++ -...+++.+|.+++|. |+++||.+.+......
T Consensus 35 L~~rF~kl~----~~~~~g~lt~eef~~i~~~~-~Np---~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~------- 99 (187)
T KOG0034|consen 35 LYERFKKLD----RNNGDGYLTKEEFLSIPELA-LNP---LADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPK------- 99 (187)
T ss_pred HHHHHHHhc----cccccCccCHHHHHHHHHHh-cCc---HHHHHHHHHhccCCCCccCHHHHHHHHhhhcCC-------
Confidence 456666666 66 7 999999999998432 222 2567889999999998 9999999998632221
Q ss_pred HHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhCCc
Q 007179 86 KQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPA 121 (614)
Q Consensus 86 ~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~~~ 121 (614)
...++-++-.|+.+|.+++|.|+.+|+++++...-.
T Consensus 100 ~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~ 135 (187)
T KOG0034|consen 100 ASKREKLRFAFRVYDLDGDGFISREELKQILRMMVG 135 (187)
T ss_pred ccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHc
Confidence 111244567899999999999999999999987643
No 143
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=97.88 E-value=1.6e-05 Score=73.50 Aligned_cols=28 Identities=36% Similarity=0.738 Sum_probs=26.0
Q ss_pred CCeEEEEEeCcCHHHHHHHHHHHHHhhc
Q 007179 525 YEVVLLVGLGIGATPMISIVKDIVNNMK 552 (614)
Q Consensus 525 ~~~vvlIagG~GItp~~s~l~~l~~~~~ 552 (614)
|+++||||||+||||++|+++++++..+
T Consensus 1 y~~vvlvAGG~GIt~~l~~l~~l~~~~~ 28 (156)
T PF08030_consen 1 YDNVVLVAGGSGITPILPILRDLLQRQN 28 (156)
T ss_dssp SSEEEEEEEGGGHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEecCcCHHHHHHHHHHHHHhhc
Confidence 6899999999999999999999998765
No 144
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.87 E-value=3.2e-05 Score=63.37 Aligned_cols=68 Identities=15% Similarity=0.205 Sum_probs=51.2
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHh
Q 007179 47 RLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQ 118 (614)
Q Consensus 47 kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~ 118 (614)
.+-..|+.|-. +++.+++.||+.+++..++. -++ ...-.+.++++|+.+|.|+||.|+|+||..++..
T Consensus 9 ~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~-~l~--~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 9 KMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSE-FLK--NQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred HHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHH-HHc--CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 45678999973 45699999999999854431 111 1112467889999999999999999999988754
No 145
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=97.87 E-value=2.5e-05 Score=71.92 Aligned_cols=65 Identities=23% Similarity=0.403 Sum_probs=53.1
Q ss_pred HHHHHHHHHhcCCCCCceeHHHHHHHHH-hhhccCcccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhC
Q 007179 46 SRLQTFFDMVDKDADGRITEDEVREIIS-LSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQA 119 (614)
Q Consensus 46 ~kl~~~F~~~D~d~dG~I~~~E~~~~l~-~~~~~~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~ 119 (614)
.....+|+.||.|.||+|+..|++.||. +..+...+. +..|+++.|.|+||.|||-||.-+....
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~---------lK~mikeVded~dgklSfreflLIfrka 164 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLG---------LKNMIKEVDEDFDGKLSFREFLLIFRKA 164 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHH---------HHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 4577899999999999999999999996 333333333 4579999999999999999998777644
No 146
>PF14658 EF-hand_9: EF-hand domain
Probab=97.85 E-value=5.1e-05 Score=57.87 Aligned_cols=59 Identities=20% Similarity=0.365 Sum_probs=54.9
Q ss_pred HHHHHHhcccCCCC-CcccHHHHHHHHHHhcC-CChHHHHHHHHHHhcCCCC-CceeHHHHHHHHH
Q 007179 11 ELFDALTRRRNIQG-DTITKDQLREFWDQISD-QSFDSRLQTFFDMVDKDAD-GRITEDEVREIIS 73 (614)
Q Consensus 11 ~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~~~-~~~~~kl~~~F~~~D~d~d-G~I~~~E~~~~l~ 73 (614)
..|+.+| .++ |.|...+++..|+.++. ++++++++.+.+.+|.++. |.|++++|..+|+
T Consensus 2 ~~F~~fD----~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 2 TAFDAFD----TQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMR 63 (66)
T ss_pred cchhhcC----CcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHH
Confidence 4689999 999 99999999999999988 7889999999999999988 9999999999986
No 147
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=97.81 E-value=7e-05 Score=61.95 Aligned_cols=62 Identities=18% Similarity=0.351 Sum_probs=48.5
Q ss_pred HHHHHHHHhcccCCCC-C-cccHHHHHHHHHHh-----cCCChHHHHHHHHHHhcCCCCCceeHHHHHHHHH
Q 007179 9 AVELFDALTRRRNIQG-D-TITKDQLREFWDQI-----SDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 73 (614)
Q Consensus 9 ~~~~f~~~D~~~~~~~-G-~I~~~ef~~~l~~~-----~~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~ 73 (614)
+..+|+. +.+.++ | +|+.+||...+..- .....++.+..+++.+|.|+||.|+++||..++.
T Consensus 11 l~~~F~~---y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~ 79 (89)
T cd05023 11 LIAVFQK---YAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIG 79 (89)
T ss_pred HHHHHHH---HhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 4555555 222666 4 99999999999764 2234567899999999999999999999998885
No 148
>PF14658 EF-hand_9: EF-hand domain
Probab=97.81 E-value=7.1e-05 Score=57.10 Aligned_cols=62 Identities=21% Similarity=0.362 Sum_probs=51.5
Q ss_pred HHHHHhcCCCCCceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcCCCCC-CceeHHHHHHHHHh
Q 007179 50 TFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHL-GCIMIDNLEMLLLQ 118 (614)
Q Consensus 50 ~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D~d~~-G~It~eef~~~l~~ 118 (614)
.+|++||.+++|.|...++..+|+.+... .. .+..++.+.+++|+++. |.|++++|..+|++
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~-~p------~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGR-SP------EESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCC-CC------cHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 47999999999999999999999853321 11 24577889999999998 99999999999875
No 149
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=97.80 E-value=7.4e-05 Score=64.86 Aligned_cols=58 Identities=22% Similarity=0.269 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhcccCCCC-CcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCceeHHHHHHHH
Q 007179 7 DFAVELFDALTRRRNIQG-DTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREII 72 (614)
Q Consensus 7 ~~~~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~~~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l 72 (614)
+.+.-.|..+| .|+ |.||.+|+..+. ....+..+..+|+.+|.|+||.||.+||...+
T Consensus 48 ~~l~w~F~~lD----~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 48 DPVGWMFNQLD----GNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHC----CCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 44788899999 999 999999999765 34457778899999999999999999999988
No 150
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=97.73 E-value=7.8e-05 Score=71.65 Aligned_cols=127 Identities=15% Similarity=0.136 Sum_probs=81.1
Q ss_pred ccCccchhHHHHHHHHHHHHHHHHHHhhhhccccceecccccccCCcCCccCCCCccccccccccchHHHHHHHHHHHHH
Q 007179 240 VPFDDNLNFHKVIAVGISIGVGIHAISHLACDFPRLINASEEKYEPMEPYFGDQPKNYWHFVKSVEGVTGIVMVVLMAIA 319 (614)
Q Consensus 240 ~~~d~~~~~Hr~~g~~~~~~~~iH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~l~~~ 319 (614)
.+.++.+.+||++|..+++++++|.++++.... . .+++.... ........+.|.+++++++.+
T Consensus 68 ~~~~~l~~~RR~LGl~af~~a~lH~~~y~~~~~-----~--~~~~~~~~----------~i~~~~~i~~G~ia~~lLl~L 130 (205)
T PRK05419 68 TGQPLLIRTRRLLGLWAFFYATLHLLSYLLLDL-----G--LDWSLLGK----------EIVKRPYITVGMAAFLILLPL 130 (205)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----c--ccHHHHHH----------HHHhchHHHHHHHHHHHHHHH
Confidence 345788999999999999999999998763110 0 00100000 111112245688888888888
Q ss_pred HHhcchhHhhccCCCCCccccccccchhHHHHHHHHHHHHHHHHHhhhhhhccccccceeEEeeehhhhHHhhHhhhhhh
Q 007179 320 FTLATPWFRRNKLNLPKPLKKLTGFNAFWYSHHLFVIVYTLLIVHGQYLYLTKKWYKKTTWMYLAIPICLYATERLIRAL 399 (614)
Q Consensus 320 ~~~s~~~iRr~~~~~~~~~~~~~~ye~F~~~H~l~~~~~v~~~~H~~~~~~~~~~~~~~~w~~~~~~~~i~~~dr~~r~~ 399 (614)
.++|....||+. .| .|..+|.+..+++++..+|.... .+... .+...|.++ ++.+..-|+.+..
T Consensus 131 aiTS~~~~~rrL-----------g~-~Wk~LH~l~Y~a~~L~~~H~~~~-~k~~~--~~~~~y~~~-~~~ll~~R~~~~~ 194 (205)
T PRK05419 131 ALTSTRASQRRL-----------GK-RWQKLHRLVYLIAILAPLHYLWS-VKSDS--PEPLIYAAI-VAVLLALRLKKLR 194 (205)
T ss_pred HHHhhHHHHHHH-----------HH-HHHHHHHHHHHHHHHHHHHHHHH-hcccc--ccHHHHHHH-HHHHHHHHHHHHH
Confidence 899999988762 47 79999999999888889995532 12111 123345433 3444455666654
No 151
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.72 E-value=0.0001 Score=60.97 Aligned_cols=64 Identities=13% Similarity=0.323 Sum_probs=49.0
Q ss_pred HHHHHHHhcccCCC-C-CcccHHHHHHHHHH-hcCCCh----HHHHHHHHHHhcCCCCCceeHHHHHHHHH
Q 007179 10 VELFDALTRRRNIQ-G-DTITKDQLREFWDQ-ISDQSF----DSRLQTFFDMVDKDADGRITEDEVREIIS 73 (614)
Q Consensus 10 ~~~f~~~D~~~~~~-~-G~I~~~ef~~~l~~-~~~~~~----~~kl~~~F~~~D~d~dG~I~~~E~~~~l~ 73 (614)
..+...|-+++..+ . |.|+.+||..+|.. ++...+ ++.+..+|+.+|.|++|.|+++||..++.
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~ 78 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVI 78 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 34444444444443 3 89999999999974 443333 78899999999999999999999998886
No 152
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.68 E-value=0.00012 Score=77.02 Aligned_cols=57 Identities=28% Similarity=0.391 Sum_probs=49.5
Q ss_pred CCChHHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHh
Q 007179 41 DQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQ 118 (614)
Q Consensus 41 ~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~ 118 (614)
....+..++.+|++||.|+||.|+.+||.. .+.+|+.+|.|+||.|+++||++.+..
T Consensus 329 ~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~---------------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 329 GEAFTHAAQEIFRLYDLDGDGFITREEWLG---------------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred cChhhHHHHHHHHHhCCCCCCcCcHHHHHH---------------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 445678899999999999999999999831 237899999999999999999998864
No 153
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=97.59 E-value=0.00014 Score=80.44 Aligned_cols=58 Identities=12% Similarity=0.237 Sum_probs=38.6
Q ss_pred CCCCeEEEEEeCcCHHHHHHHHHHHHHhhcccc-----------------h-hHHHHHhcccccCCCE-EEEEecCC
Q 007179 523 KEYEVVLLVGLGIGATPMISIVKDIVNNMKAIE-----------------E-EEENDLENGRDTGVNT-TIIIIDNN 580 (614)
Q Consensus 523 ~~~~~vvlIagG~GItp~~s~l~~l~~~~~~~~-----------------~-~~~~~l~~l~~~~~~~-~v~~~~~~ 580 (614)
+...+++|||-||||||+++++++......... + ++.+|++...+.+... .....+++
T Consensus 489 dp~~PiIMIGpGTGiAPFRgFlq~r~~~~~~~~~~~~~~~Lf~GcR~~~~d~LY~eE~~~~~~~~~l~~l~~A~SRe 565 (645)
T KOG1158|consen 489 DPSTPIIMIGPGTGIAPFRGFLQERLFLKQQGPKFGGGMWLFFGCRNSDEDYLYREEWEEYKKAGILTRLDVAFSRE 565 (645)
T ss_pred CCCCcEEEEcCCCcchhhHHHHHHHHHhhhcCccCCcceEEEEeCCCchHHHHHHHHHHHHHhcCcchhheeeeecc
Confidence 345689999999999999999999876533221 1 3556888765555543 22334443
No 154
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.57 E-value=0.00011 Score=47.80 Aligned_cols=27 Identities=48% Similarity=0.746 Sum_probs=24.1
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHH
Q 007179 47 RLQTFFDMVDKDADGRITEDEVREIIS 73 (614)
Q Consensus 47 kl~~~F~~~D~d~dG~I~~~E~~~~l~ 73 (614)
+++.+|+.||.|+||+|+.+||..+++
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 478999999999999999999999986
No 155
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=97.54 E-value=7e-05 Score=76.97 Aligned_cols=95 Identities=16% Similarity=0.156 Sum_probs=65.7
Q ss_pred CC-CcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCccc------------chhHHHH
Q 007179 23 QG-DTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLS------------NIQKQAE 89 (614)
Q Consensus 23 ~~-G~I~~~ef~~~l~~~~~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~------------~~~~~~~ 89 (614)
++ |-||+.|++-.+..+.. ++...+-+|+|+|.||||.|+++||..+.+.-.++..+. ...+.+.
T Consensus 211 g~~GLIsfSdYiFLlTlLS~--p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~ns 288 (489)
T KOG2643|consen 211 GESGLISFSDYIFLLTLLSI--PERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNS 288 (489)
T ss_pred CCCCeeeHHHHHHHHHHHcc--CcccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhh
Confidence 35 89999999998887743 455677899999999999999999998886322211111 0011111
Q ss_pred HHHHHHHHHcCCCCCCceeHHHHHHHHHhCCcc
Q 007179 90 EYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQ 122 (614)
Q Consensus 90 ~~~~~lf~~~D~d~~G~It~eef~~~l~~~~~~ 122 (614)
. -...-++++.++.++++||.+.+++--.+
T Consensus 289 a---L~~yFFG~rg~~kLs~deF~~F~e~Lq~E 318 (489)
T KOG2643|consen 289 A---LLTYFFGKRGNGKLSIDEFLKFQENLQEE 318 (489)
T ss_pred h---HHHHhhccCCCccccHHHHHHHHHHHHHH
Confidence 1 12234688999999999999888764333
No 156
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.52 E-value=0.00013 Score=44.69 Aligned_cols=25 Identities=32% Similarity=0.667 Sum_probs=21.8
Q ss_pred HHHHHHHhcCCCCCceeHHHHHHHH
Q 007179 48 LQTFFDMVDKDADGRITEDEVREII 72 (614)
Q Consensus 48 l~~~F~~~D~d~dG~I~~~E~~~~l 72 (614)
++.+|+.+|.|+||.|+.+|+.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678999999999999999998764
No 157
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=97.50 E-value=0.00026 Score=73.57 Aligned_cols=106 Identities=17% Similarity=0.240 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhcccCCCC-CcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCceeHHHHHHHHHh---hhccCccc
Q 007179 7 DFAVELFDALTRRRNIQG-DTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISL---SASANKLS 82 (614)
Q Consensus 7 ~~~~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~~~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~---~~~~~~~~ 82 (614)
-+++++|+..-+-..... |.+|+++|+..+-+....++..-++..|+..|.|+||.|+.+|++.+... .+......
T Consensus 311 ~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e 390 (493)
T KOG2562|consen 311 RIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQE 390 (493)
T ss_pred HHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCC
Confidence 467899984443332445 89999999999888777777778999999999999999999999888762 11111111
Q ss_pred chhHHHHHHHHHHHHHcCCCCCCceeHHHHHH
Q 007179 83 NIQKQAEEYAALIMEELDPDHLGCIMIDNLEM 114 (614)
Q Consensus 83 ~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~ 114 (614)
+-..++.+.+++....+.+.+.||.+||+.
T Consensus 391 --~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 391 --ALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred --cccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 233577888999999999999999999987
No 158
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.48 E-value=0.00051 Score=60.93 Aligned_cols=78 Identities=22% Similarity=0.326 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhc---------------------------cCcccchhHHHHHHHHHHH
Q 007179 44 FDSRLQTFFDMVDKDADGRITEDEVREIISLSAS---------------------------ANKLSNIQKQAEEYAALIM 96 (614)
Q Consensus 44 ~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~---------------------------~~~~~~~~~~~~~~~~~lf 96 (614)
+-.+.+++|.+.|.|+||.|++++++.++.+.-. +..+. ....++.+-..|
T Consensus 30 QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~--gtdpe~~I~~AF 107 (171)
T KOG0031|consen 30 QIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEAPGPINFTVFLTMFGEKLN--GTDPEEVILNAF 107 (171)
T ss_pred HHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhc--CCCHHHHHHHHH
Confidence 3467899999999999999999999999862100 11111 111355666678
Q ss_pred HHcCCCCCCceeHHHHHHHHHhCCccc
Q 007179 97 EELDPDHLGCIMIDNLEMLLLQAPAQS 123 (614)
Q Consensus 97 ~~~D~d~~G~It~eef~~~l~~~~~~~ 123 (614)
+.+|.+++|.|.-+.++++|....+.+
T Consensus 108 ~~FD~~~~G~I~~d~lre~Ltt~gDr~ 134 (171)
T KOG0031|consen 108 KTFDDEGSGKIDEDYLRELLTTMGDRF 134 (171)
T ss_pred HhcCccCCCccCHHHHHHHHHHhcccC
Confidence 899999999999999999998876554
No 159
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.35 E-value=0.00026 Score=43.37 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=21.8
Q ss_pred HHHHHHcCCCCCCceeHHHHHHHH
Q 007179 93 ALIMEELDPDHLGCIMIDNLEMLL 116 (614)
Q Consensus 93 ~~lf~~~D~d~~G~It~eef~~~l 116 (614)
++.|+.+|.|+||.||.+||.+++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHC
Confidence 468999999999999999999864
No 160
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.35 E-value=0.0007 Score=48.68 Aligned_cols=48 Identities=17% Similarity=0.341 Sum_probs=39.9
Q ss_pred cccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCceeHHHHHHHHH
Q 007179 26 TITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 73 (614)
Q Consensus 26 ~I~~~ef~~~l~~~~~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~ 73 (614)
+++++|....|..+.-...++.+..+|+.+|++++|.++.+||..+.+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHH
Confidence 478999999999988888899999999999999999999999999875
No 161
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.00077 Score=56.48 Aligned_cols=72 Identities=15% Similarity=0.158 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHhcCCCCCceeHHHHHHHHHhhh----ccC-cc-cchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHH
Q 007179 44 FDSRLQTFFDMVDKDADGRITEDEVREIISLSA----SAN-KL-SNIQKQAEEYAALIMEELDPDHLGCIMIDNLEML 115 (614)
Q Consensus 44 ~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~----~~~-~~-~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~ 115 (614)
+++----.|+|.|.|++|.|+--|+.+.+.... ++. .. -..+.+.+.+++.+.+.-|.|+||+|+|.||.+.
T Consensus 65 peqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 65 PEQLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred HHHHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 333333479999999999999999988886211 111 11 1236778889999999999999999999999763
No 162
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=97.30 E-value=0.00099 Score=61.59 Aligned_cols=94 Identities=19% Similarity=0.269 Sum_probs=69.2
Q ss_pred HHHHHHHHhcccCCCC-CcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCcccchhHH
Q 007179 9 AVELFDALTRRRNIQG-DTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQ 87 (614)
Q Consensus 9 ~~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~~~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~~~~~~ 87 (614)
++.+|+.+| .+. |+||+.|++.+|.+++...+---++.+.+..|.|.||+|++-||.-+.+.-.. .++..
T Consensus 101 ~~~~Fk~yD----e~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaa-gEL~~---- 171 (244)
T KOG0041|consen 101 AESMFKQYD----EDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAA-GELQE---- 171 (244)
T ss_pred HHHHHHHhc----ccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhc-ccccc----
Confidence 578888888 888 99999999999999988777778999999999999999999999887764332 23331
Q ss_pred HHHHHHHH--HHHcCCCCCCceeHHHH
Q 007179 88 AEEYAALI--MEELDPDHLGCIMIDNL 112 (614)
Q Consensus 88 ~~~~~~~l--f~~~D~d~~G~It~eef 112 (614)
++....+ .++.|..+.|----..|
T Consensus 172 -ds~~~~LAr~~eVDVskeGV~GAknF 197 (244)
T KOG0041|consen 172 -DSGLLRLARLSEVDVSKEGVSGAKNF 197 (244)
T ss_pred -chHHHHHHHhcccchhhhhhhhHHHH
Confidence 1222222 23467776665443333
No 163
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.26 E-value=0.0013 Score=53.92 Aligned_cols=64 Identities=11% Similarity=0.231 Sum_probs=49.1
Q ss_pred HHHHHHHHhcccCCCCCcccHHHHHHHHHH-h----cCCChHHHHHHHHHHhcCCCCCceeHHHHHHHHH
Q 007179 9 AVELFDALTRRRNIQGDTITKDQLREFWDQ-I----SDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 73 (614)
Q Consensus 9 ~~~~f~~~D~~~~~~~G~I~~~ef~~~l~~-~----~~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~ 73 (614)
+..+.+.|.+|. .+++.++..||...+.+ + ......+.++.+|+..|.|+||.|+++||..++.
T Consensus 7 i~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~ 75 (91)
T cd05024 7 MEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIA 75 (91)
T ss_pred HHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 344555555555 44489999999999964 2 3334467899999999999999999999999885
No 164
>COG2717 Predicted membrane protein [Function unknown]
Probab=97.22 E-value=0.00098 Score=63.15 Aligned_cols=123 Identities=15% Similarity=0.186 Sum_probs=82.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhhhccccceecccccccCCcCCccCCCCccccccccccchHHHHHHHHHHHHHHHhc
Q 007179 244 DNLNFHKVIAVGISIGVGIHAISHLACDFPRLINASEEKYEPMEPYFGDQPKNYWHFVKSVEGVTGIVMVVLMAIAFTLA 323 (614)
Q Consensus 244 ~~~~~Hr~~g~~~~~~~~iH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~s 323 (614)
..+.+-|.+|.+++++++.|...|+... -+++ ... +. . ..........|++++++|..+.++|
T Consensus 72 ~l~~~Rr~LGl~af~~~~lH~~~Y~~~~---------l~~~-~~~-~~-~-----d~~~rpyitiG~iaflll~pLalTS 134 (209)
T COG2717 72 KLIRIRRALGLWAFFYALLHFTAYLVLD---------LGLD-LAL-LG-L-----DLLKRPYITIGMIAFLLLIPLALTS 134 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------Hhcc-HHH-hh-H-----HHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 4467999999999999999999997421 1111 000 00 0 1122334668999999999999999
Q ss_pred chhHhhccCCCCCccccccccchhHHHHHHHHHHHHHHHHHhhhhhhccccccceeEEeeehhhhHHhhHhhhhhh
Q 007179 324 TPWFRRNKLNLPKPLKKLTGFNAFWYSHHLFVIVYTLLIVHGQYLYLTKKWYKKTTWMYLAIPICLYATERLIRAL 399 (614)
Q Consensus 324 ~~~iRr~~~~~~~~~~~~~~ye~F~~~H~l~~~~~v~~~~H~~~~~~~~~~~~~~~w~~~~~~~~i~~~dr~~r~~ 399 (614)
..+.||+. . ..|..+|.+..+++++..+|.....- .. ...++.|.++ .+.+.+.|+.+..
T Consensus 135 ~k~~~rrl-----------G-~rW~~LHrLvYl~~~L~~lH~~~s~K-~~--~~~~vlY~ii-~~~lll~R~~k~~ 194 (209)
T COG2717 135 FKWVRRRL-----------G-KRWKKLHRLVYLALILGALHYLWSVK-ID--MPEPVLYAII-FAVLLLLRVTKTR 194 (209)
T ss_pred hHHHHHHH-----------H-HHHHHHHHHHHHHHHHHHHHHHHhcC-cc--chHHHHHHHH-HHHHHHHHHHHHH
Confidence 99999873 4 67899999999999999999774211 00 1123345432 4566667766654
No 165
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.19 E-value=0.0012 Score=56.01 Aligned_cols=63 Identities=22% Similarity=0.360 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHH
Q 007179 44 FDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLL 117 (614)
Q Consensus 44 ~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~ 117 (614)
+.++...+|+..|. ++|.|+-++.+.++.. .+++ .+.+.++...+|.|+||+++++||.-+|.
T Consensus 8 e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~----S~L~------~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 8 EKQKYDQIFQSLDP-QDGKISGDQAREFFMK----SGLP------RDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp HHHHHHHHHHCTSS-STTEEEHHHHHHHHHH----TTSS------HHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCCeEeHHHHHHHHHH----cCCC------HHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 45677888988884 6899999998888752 3344 45666889999999999999999977665
No 166
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.07 E-value=0.0025 Score=54.17 Aligned_cols=66 Identities=24% Similarity=0.366 Sum_probs=53.3
Q ss_pred CcchHHHHHHHHHHHhcccCCCCCcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCceeHHHHHHHHH
Q 007179 2 NKDSKDFAVELFDALTRRRNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 73 (614)
Q Consensus 2 ~~~~~~~~~~~f~~~D~~~~~~~G~I~~~ef~~~l~~~~~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~ 73 (614)
+.++++...++|+.+| ..+|.|+-++....+.+. +-+.+.+..++++.|.|+||+++++||.-.|.
T Consensus 5 s~~e~~~y~~~F~~l~----~~~g~isg~~a~~~f~~S--~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 5 SPEEKQKYDQIFQSLD----PQDGKISGDQAREFFMKS--GLPRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp SCCHHHHHHHHHHCTS----SSTTEEEHHHHHHHHHHT--TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC----CCCCeEeHHHHHHHHHHc--CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 3455555688898877 655999999999988764 44678899999999999999999999987775
No 167
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=96.93 E-value=0.022 Score=56.43 Aligned_cols=125 Identities=13% Similarity=0.122 Sum_probs=88.1
Q ss_pred cceeEEEEEEEEecCCEEEEEEeCCCCcc----cCCCCEEEEEeCCCCC--------------------CccccceeccC
Q 007179 402 SIKAVSIQKVAVYPGNVLALHMSKPDRFR----YKSGQYMFVNCAAVSP--------------------FEWHPFSITSA 457 (614)
Q Consensus 402 ~~~~~~v~~~~~~~~~v~~l~l~~~~~~~----~~pGQ~v~l~~p~~~~--------------------~~~hpfTias~ 457 (614)
+.+.++|+.++.++++.+++++..+.... ..++||+.|-+|..+. .-.|+|||.+.
T Consensus 16 ~~~~~~V~~~~~lsP~m~Rv~~~g~~l~~f~~~~~~d~~ikL~fp~~~~~~~~~~~~~~~~~~~~~~~r~~~R~YTiR~~ 95 (265)
T COG2375 16 RLHEATVTRVTQLSPHMVRVVLGGEGLAGFASLGFGDQHIKLFFPPPDGDPPRLPVLEERGAVPPGAQRPPQRTYTIRAV 95 (265)
T ss_pred cceEEEEEEEEecCCCeEEEEEecccccccccccCCCceeEEEecCccCCCCCCcccccccccCccccCCCcccceeeee
Confidence 34678999999999999999999887433 3345599999986521 22688999754
Q ss_pred -CCCCcE--EEEEEec-CccchHHHHHhhhcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCCCCCCCCCCeEEEEEe
Q 007179 458 -PDDDYL--SVHIRTL-GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAPAQDYKEYEVVLLVGL 533 (614)
Q Consensus 458 -p~~~~l--~l~ir~~-g~~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~~~~~~~~~~vvlIag 533 (614)
++.+++ .|++--. |..+..-.+ + ..|+++.|-||-|.... ...++..+|||=
T Consensus 96 d~~~~e~~vDfVlH~~~gpas~WA~~-a----------------------~~GD~l~i~GP~g~~~p-~~~~~~~lLigD 151 (265)
T COG2375 96 DAAAGELDVDFVLHGEGGPASRWART-A----------------------QPGDTLTIMGPRGSLVP-PEAADWYLLIGD 151 (265)
T ss_pred cccccEEEEEEEEcCCCCcchhhHhh-C----------------------CCCCEEEEeCCCCCCCC-CCCcceEEEecc
Confidence 444544 4444422 222222111 1 12599999999999654 457889999999
Q ss_pred CcCHHHHHHHHHHHHHh
Q 007179 534 GIGATPMISIVKDIVNN 550 (614)
Q Consensus 534 G~GItp~~s~l~~l~~~ 550 (614)
=+++..+..+|+++-..
T Consensus 152 etAlPAIa~iLE~lp~~ 168 (265)
T COG2375 152 ETALPAIARILETLPAD 168 (265)
T ss_pred ccchHHHHHHHHhCCCC
Confidence 99999999999987654
No 168
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=96.91 E-value=0.0013 Score=42.60 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=23.5
Q ss_pred HHHHHHHcCCCCCCceeHHHHHHHHHh
Q 007179 92 AALIMEELDPDHLGCIMIDNLEMLLLQ 118 (614)
Q Consensus 92 ~~~lf~~~D~d~~G~It~eef~~~l~~ 118 (614)
++++|+.+|.|++|+|+.+||++++++
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 457899999999999999999999974
No 169
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=96.87 E-value=0.0022 Score=66.05 Aligned_cols=63 Identities=21% Similarity=0.380 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhcccCCCC-CcccHHHHHHHHHHhcCC----ChHHHHHHHHHHhcCCCCCceeHHHHHHHHH
Q 007179 7 DFAVELFDALTRRRNIQG-DTITKDQLREFWDQISDQ----SFDSRLQTFFDMVDKDADGRITEDEVREIIS 73 (614)
Q Consensus 7 ~~~~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~~~~----~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~ 73 (614)
..++-+|+.+| .|. |.|+.+||..+++.++.- -+++.+..+-++.|.|+||.|+.+||.+..+
T Consensus 547 s~LetiF~~iD----~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 547 SSLETIFNIID----ADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred hhHHHHHHHhc----cCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Confidence 34678999999 999 999999999998765422 3577888888999999999999999988776
No 170
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=96.76 E-value=0.003 Score=66.36 Aligned_cols=84 Identities=19% Similarity=0.313 Sum_probs=55.8
Q ss_pred eCCCCCCccccceeccCCCCCcEEEEEEec-----------CccchHHHHHhhhcCCCCCCCCCccccccCCCCCCCCEE
Q 007179 441 CAAVSPFEWHPFSITSAPDDDYLSVHIRTL-----------GDWTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRV 509 (614)
Q Consensus 441 ~p~~~~~~~hpfTias~p~~~~l~l~ir~~-----------g~~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v 509 (614)
+|.+ ..|.|||||+|....+++.|..+ |=.++.|..+ .+| +.+
T Consensus 363 ~P~I---rPR~fSIas~~~~~~leL~VAiV~ykT~l~~pRrGlCS~wl~sL--------~~g---------------~~i 416 (574)
T KOG1159|consen 363 LPVI---RPRAFSIASSPGAHHLELLVAIVEYKTILKEPRRGLCSNWLASL--------KPG---------------DEI 416 (574)
T ss_pred cccc---ccceeeeccCCCCCceeEEEEEEEEeeeccccccchhHHHHhhc--------CCC---------------CeE
Confidence 4555 56999999999888888777544 2234444332 233 444
Q ss_pred EEeCccCCCCCCCCCCCeEEEEEeCcCHHHHHHHHHHHHHh
Q 007179 510 LIDGPYGAPAQDYKEYEVVLLVGLGIGATPMISIVKDIVNN 550 (614)
Q Consensus 510 ~i~GPyG~~~~~~~~~~~vvlIagG~GItp~~s~l~~l~~~ 550 (614)
.+.=-=|+...+.....+++|||-|+||||+.|++++-+..
T Consensus 417 ~~~v~~g~l~~p~~~~~PlImVGPGTGvAPfRa~i~er~~q 457 (574)
T KOG1159|consen 417 PIKVRPGTLYFPSDLNKPLIMVGPGTGVAPFRALIQERIYQ 457 (574)
T ss_pred EEEEecCccccCCCCCCCeEEEcCCCCcccHHHHHHHHHhh
Confidence 44433455433333356899999999999999999987743
No 171
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=96.76 E-value=0.0026 Score=67.19 Aligned_cols=51 Identities=29% Similarity=0.502 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhcccCCCC-CcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCceeHHHHHHHHH
Q 007179 6 KDFAVELFDALTRRRNIQG-DTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 73 (614)
Q Consensus 6 ~~~~~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~~~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~ 73 (614)
+.+++.+|+.+| .++ |.|+.+||.. +..+|+.+|.|+||.|+++||...++
T Consensus 333 ~~~l~~aF~~~D----~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~ 384 (391)
T PRK12309 333 THAAQEIFRLYD----LDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLG 384 (391)
T ss_pred hHHHHHHHHHhC----CCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 456789999999 999 9999999952 46789999999999999999999886
No 172
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=96.69 E-value=0.0035 Score=64.85 Aligned_cols=97 Identities=22% Similarity=0.330 Sum_probs=70.6
Q ss_pred HHHHHHHhcccCCCC-CcccHHHHHHHHHHhcCC--------------C-hHHHHHH--HHHHhcCCCCCceeHHHHHHH
Q 007179 10 VELFDALTRRRNIQG-DTITKDQLREFWDQISDQ--------------S-FDSRLQT--FFDMVDKDADGRITEDEVREI 71 (614)
Q Consensus 10 ~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~~~~--------------~-~~~kl~~--~F~~~D~d~dG~I~~~E~~~~ 71 (614)
+-.|+.|| .|| |.||.+||...++..... + .+-.+.. .-..|.+|++++++.+||.++
T Consensus 236 ~IAFKMFD----~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F 311 (489)
T KOG2643|consen 236 RIAFKMFD----LDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKF 311 (489)
T ss_pred eeeeeeee----cCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHH
Confidence 45688899 999 999999999887443111 0 0112222 233468899999999999999
Q ss_pred HHhhhccCcccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhCCcc
Q 007179 72 ISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQ 122 (614)
Q Consensus 72 l~~~~~~~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~~~~ 122 (614)
++ +..+|+.+.=|+.+|+...|.|+-.||..++..+...
T Consensus 312 ~e------------~Lq~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~ 350 (489)
T KOG2643|consen 312 QE------------NLQEEILELEFERFDKGDSGAISEVDFAELLLAYAGV 350 (489)
T ss_pred HH------------HHHHHHHHHHHHHhCcccccccCHHHHHHHHHHHccc
Confidence 85 2224555556999999999999999999999876544
No 173
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.69 E-value=0.0052 Score=71.67 Aligned_cols=100 Identities=16% Similarity=0.258 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHhcccCCCC-CcccHHHHHHHHHHhcCCC-------hHHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhc
Q 007179 6 KDFAVELFDALTRRRNIQG-DTITKDQLREFWDQISDQS-------FDSRLQTFFDMVDKDADGRITEDEVREIISLSAS 77 (614)
Q Consensus 6 ~~~~~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~~~~~-------~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~ 77 (614)
+|| .-+|+.|| ++. |.++.++|..||+.++..- |+-+++.+.+..|.+.+|+|+.+|...+|-..-+
T Consensus 2253 ~EF-s~~fkhFD----kek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ET 2327 (2399)
T KOG0040|consen 2253 KEF-SMMFKHFD----KEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKET 2327 (2399)
T ss_pred HHH-HHHHHHhc----hhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhccc
Confidence 455 77899999 998 9999999999999987553 3348999999999999999999999988864333
Q ss_pred cCcccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHH
Q 007179 78 ANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLL 117 (614)
Q Consensus 78 ~~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~ 117 (614)
+|-.+ .+.++..|+.+|. +.-+|+-++..+-|.
T Consensus 2328 eNI~s------~~eIE~AfraL~a-~~~yvtke~~~~~lt 2360 (2399)
T KOG0040|consen 2328 ENILS------SEEIEDAFRALDA-GKPYVTKEELYQNLT 2360 (2399)
T ss_pred ccccc------hHHHHHHHHHhhc-CCccccHHHHHhcCC
Confidence 33222 3467788999998 778899888765443
No 174
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=96.61 E-value=0.0029 Score=60.21 Aligned_cols=71 Identities=23% Similarity=0.369 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhCC
Q 007179 45 DSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAP 120 (614)
Q Consensus 45 ~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~~ 120 (614)
.+++..+|+..|.|.||+|+..|+++-+.....+ .+ ++..++-+.-|+..|+|+||.|+++||+--+....
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImektaE-Hf----qeameeSkthFraVDpdgDGhvsWdEykvkFlask 170 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAE-HF----QEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASK 170 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHHH-HH----HHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhc
Confidence 4689999999999999999999999887632221 11 12223334568889999999999999986655443
No 175
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.48 E-value=0.0083 Score=43.24 Aligned_cols=49 Identities=18% Similarity=0.411 Sum_probs=36.4
Q ss_pred ceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHh
Q 007179 62 RITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQ 118 (614)
Q Consensus 62 ~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~ 118 (614)
+++++|++.+++.. .+ +..++.+..+|+++|++++|.+.-+||....+.
T Consensus 1 kmsf~Evk~lLk~~----NI----~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMM----NI----EMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHT----T--------HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH----cc----CcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 36889999999731 11 223678889999999999999999999887653
No 176
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.39 E-value=0.0036 Score=54.24 Aligned_cols=61 Identities=18% Similarity=0.205 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHH
Q 007179 44 FDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEM 114 (614)
Q Consensus 44 ~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~ 114 (614)
-...+...|..+|.|+||.++..|++.+.... .. .+.=++..++..|.|+||.||..|+..
T Consensus 52 ~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l------~~----~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL------MP----PEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT------ST----TGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH------hh----hHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 45678899999999999999999998775411 11 112244789999999999999999864
No 177
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=96.36 E-value=0.01 Score=58.51 Aligned_cols=92 Identities=18% Similarity=0.356 Sum_probs=64.2
Q ss_pred CcccHHHHHHHHHHhcCCCh-HHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhc-----cC---cccchhHHHHHHHHHH
Q 007179 25 DTITKDQLREFWDQISDQSF-DSRLQTFFDMVDKDADGRITEDEVREIISLSAS-----AN---KLSNIQKQAEEYAALI 95 (614)
Q Consensus 25 G~I~~~ef~~~l~~~~~~~~-~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~-----~~---~~~~~~~~~~~~~~~l 95 (614)
..=|.+++...+.....-++ .-.-+.+|..+|.|+||.++..|+..++...+. .| .+.+.+++.-+.-+.+
T Consensus 222 hPGSkdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHV 301 (442)
T KOG3866|consen 222 HPGSKDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHV 301 (442)
T ss_pred CCCcHHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHH
Confidence 34478888888876532222 123467999999999999999999999874332 12 2222223333456778
Q ss_pred HHHcCCCCCCceeHHHHHHHH
Q 007179 96 MEELDPDHLGCIMIDNLEMLL 116 (614)
Q Consensus 96 f~~~D~d~~G~It~eef~~~l 116 (614)
|+..|.|+|..||.+||..--
T Consensus 302 Mk~vDtNqDRlvtleEFL~~t 322 (442)
T KOG3866|consen 302 MKQVDTNQDRLVTLEEFLNDT 322 (442)
T ss_pred HHhcccchhhhhhHHHHHhhh
Confidence 999999999999999997643
No 178
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=96.17 E-value=0.031 Score=48.78 Aligned_cols=89 Identities=17% Similarity=0.216 Sum_probs=52.1
Q ss_pred EEEEEEEecCCEEEEEEeCCCC--cc-cCCCCEEEEEeCCCCCC---------------------ccccceeccC-CCCC
Q 007179 407 SIQKVAVYPGNVLALHMSKPDR--FR-YKSGQYMFVNCAAVSPF---------------------EWHPFSITSA-PDDD 461 (614)
Q Consensus 407 ~v~~~~~~~~~v~~l~l~~~~~--~~-~~pGQ~v~l~~p~~~~~---------------------~~hpfTias~-p~~~ 461 (614)
+|++++.++++.+++++..+.- +. ..||||+.|.+|..+.- ..|.||+.+. |+.+
T Consensus 1 ~V~~~~~ltP~~~Rv~l~g~~l~~~~~~~~d~~ikL~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~R~YTvR~~d~~~~ 80 (117)
T PF08021_consen 1 TVVRVERLTPHMRRVTLGGEDLAGFPSWGPDQHIKLFFPPPGGDPPLPPPLDEGGYRWPPDEQRPVMRTYTVRRFDPETG 80 (117)
T ss_dssp EEEEEEEEETTEEEEEEESGGGTT--S--TT-EEEEEE--TTS----------------------EEEEEE--EEETT--
T ss_pred CEEEEEECCCCEEEEEEECCCcccCccCCCCcEEEEEeCCCCCCccccccccccccccccccCCCCCCCcCEeeEcCCCC
Confidence 5788999999999999998752 32 47999999999875321 4688999775 5667
Q ss_pred cEEEEEEecCc---cchHHHHHhhhcCCCCCCCCCccccccCCCCCCCCEEEEeCccCCC
Q 007179 462 YLSVHIRTLGD---WTRQLRTVFSEVCRPPPNGISGLLRAEGHNNPDFPRVLIDGPYGAP 518 (614)
Q Consensus 462 ~l~l~ir~~g~---~T~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~i~GPyG~~ 518 (614)
++.+-+-..|+ .+..... + ++ |+++.|-||-|+|
T Consensus 81 ~l~iDfv~Hg~~Gpas~WA~~-A-------~p---------------Gd~v~v~gP~g~~ 117 (117)
T PF08021_consen 81 ELDIDFVLHGDEGPASRWARS-A-------RP---------------GDRVGVTGPRGSF 117 (117)
T ss_dssp EEEEEEE--SS--HHHHHHHH----------T---------------T-EEEEEEEE---
T ss_pred EEEEEEEECCCCCchHHHHhh-C-------CC---------------CCEEEEeCCCCCC
Confidence 77776666654 3333322 2 13 5899999998864
No 179
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=96.14 E-value=0.03 Score=58.81 Aligned_cols=99 Identities=15% Similarity=0.257 Sum_probs=68.0
Q ss_pred CCC-CcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCcc-------------------
Q 007179 22 IQG-DTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKL------------------- 81 (614)
Q Consensus 22 ~~~-G~I~~~ef~~~l~~~~~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~------------------- 81 (614)
..+ |-||++||...=..+| .++..-..+|+.+|..++|.++.+++..++......+..
T Consensus 85 ~tKDglisf~eF~afe~~lC--~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r 162 (694)
T KOG0751|consen 85 QTKDGLISFQEFRAFESVLC--APDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKR 162 (694)
T ss_pred hcccccccHHHHHHHHhhcc--CchHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHH
Confidence 445 8999999987544443 457778889999999999999999999998721110000
Q ss_pred --------cchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhCCcc
Q 007179 82 --------SNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQ 122 (614)
Q Consensus 82 --------~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~~~~ 122 (614)
....+-.+|..++.|++-|+.++|.||--+|++++......
T Consensus 163 ~~ny~~f~Q~lh~~~~E~~~qafr~~d~~~ng~is~Ldfq~imvt~~~h 211 (694)
T KOG0751|consen 163 HLNYAEFTQFLHEFQLEHAEQAFREKDKAKNGFISVLDFQDIMVTIRIH 211 (694)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHhcccCCCeeeeechHhhhhhhhhh
Confidence 01112234456666777788888888888888877665433
No 180
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=95.64 E-value=0.026 Score=61.52 Aligned_cols=58 Identities=21% Similarity=0.214 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhcccCCCC-CcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCceeHHHH
Q 007179 6 KDFAVELFDALTRRRNIQG-DTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEV 68 (614)
Q Consensus 6 ~~~~~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~~~~~~~~kl~~~F~~~D~d~dG~I~~~E~ 68 (614)
..+++++|..+| +++ |.++|++++.++..+..+...+++..+|++||.+++ ..+.+|.
T Consensus 554 ~~~~~rlF~l~D----~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 554 LIFLERLFRLLD----DSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHHhcc----cCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 456899999999 888 999999999999999999999999999999999999 9999987
No 181
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=95.45 E-value=0.018 Score=54.92 Aligned_cols=62 Identities=19% Similarity=0.392 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHhcccCCCC-CcccHHHHHHHH-HHhcCC--ChHHHHHHHHHHhcCCCCCceeHHHHHH
Q 007179 5 SKDFAVELFDALTRRRNIQG-DTITKDQLREFW-DQISDQ--SFDSRLQTFFDMVDKDADGRITEDEVRE 70 (614)
Q Consensus 5 ~~~~~~~~f~~~D~~~~~~~-G~I~~~ef~~~l-~~~~~~--~~~~kl~~~F~~~D~d~dG~I~~~E~~~ 70 (614)
+.+.+..+|+..| .+. |+|+..|..+-+ ++.... ...++-+..|+..|.|+||.|+++|++-
T Consensus 99 srrklmviFsKvD----VNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykv 164 (362)
T KOG4251|consen 99 SRRKLMVIFSKVD----VNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKV 164 (362)
T ss_pred HHHHHHHHHhhcc----cCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhh
Confidence 4556788999999 888 999999988754 443322 2235567789999999999999999873
No 182
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=95.32 E-value=0.021 Score=35.02 Aligned_cols=27 Identities=22% Similarity=0.183 Sum_probs=23.9
Q ss_pred HHHHHHHcCCCCCCceeHHHHHHHHHh
Q 007179 92 AALIMEELDPDHLGCIMIDNLEMLLLQ 118 (614)
Q Consensus 92 ~~~lf~~~D~d~~G~It~eef~~~l~~ 118 (614)
++.+|+.+|.+++|.|+++||..++++
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 347899999999999999999998865
No 183
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=95.19 E-value=0.025 Score=34.69 Aligned_cols=26 Identities=35% Similarity=0.736 Sum_probs=22.9
Q ss_pred HHHHHHHhcCCCCCceeHHHHHHHHH
Q 007179 48 LQTFFDMVDKDADGRITEDEVREIIS 73 (614)
Q Consensus 48 l~~~F~~~D~d~dG~I~~~E~~~~l~ 73 (614)
++.+|+.+|.|++|.|+.+||..+++
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 56789999999999999999988875
No 184
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=95.06 E-value=0.058 Score=57.25 Aligned_cols=67 Identities=21% Similarity=0.286 Sum_probs=53.5
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhC
Q 007179 47 RLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQA 119 (614)
Q Consensus 47 kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~ 119 (614)
.++.-|...| |++|+|+..|+..+++..- .. .....++++++++...+.|.+|.|+||||..++.+.
T Consensus 20 ~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~----~~-~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 20 ELKEKFNKLD-DQKGYVTVYELPDAFKKAK----LP-LGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred HHHHHHHhhc-CCCCeeehHHhHHHHHHhc----cc-ccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 4677899999 9999999999999987311 11 123457888999999999999999999999876543
No 185
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=94.95 E-value=0.1 Score=54.86 Aligned_cols=100 Identities=16% Similarity=0.240 Sum_probs=69.3
Q ss_pred HHHHHHHHHhcccCCCC-CcccHHHHHHHHHH-hcCCChHHHHHHH-HHHhcCCCCCceeHHHHHHHHH-hhhccCcccc
Q 007179 8 FAVELFDALTRRRNIQG-DTITKDQLREFWDQ-ISDQSFDSRLQTF-FDMVDKDADGRITEDEVREIIS-LSASANKLSN 83 (614)
Q Consensus 8 ~~~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~-~~~~~~~~kl~~~-F~~~D~d~dG~I~~~E~~~~l~-~~~~~~~~~~ 83 (614)
.++.+|-.+..-+ +++ ...+-++|+...-. ...+...+++..+ =..-|.-+||.|+++||+.+=. +|..
T Consensus 34 eLr~if~~~as~e-~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~p------ 106 (694)
T KOG0751|consen 34 ELRSIFLKYASIE-KNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCAP------ 106 (694)
T ss_pred HHHHHHHHHhHHh-hccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccCc------
Confidence 3567765543222 566 78999999887544 3444455555444 4456788999999999986643 1111
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhC
Q 007179 84 IQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQA 119 (614)
Q Consensus 84 ~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~ 119 (614)
+..-+..|+-+|+..+|.+|++++.+++.+-
T Consensus 107 -----Dal~~~aFqlFDr~~~~~vs~~~~~~if~~t 137 (694)
T KOG0751|consen 107 -----DALFEVAFQLFDRLGNGEVSFEDVADIFGQT 137 (694)
T ss_pred -----hHHHHHHHHHhcccCCCceehHHHHHHHhcc
Confidence 3344578999999999999999999998653
No 186
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=94.71 E-value=0.02 Score=49.55 Aligned_cols=59 Identities=20% Similarity=0.288 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhcccCCCC-CcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCceeHHHHHH
Q 007179 6 KDFAVELFDALTRRRNIQG-DTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVRE 70 (614)
Q Consensus 6 ~~~~~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~~~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~ 70 (614)
+..+.=.|..+| .|+ |.++..|+...-..+ ...+.=++.+|+.+|.|+||.||..|...
T Consensus 53 ~~~~~W~F~~LD----~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 53 KRVVHWKFCQLD----RNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHHHHH------T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhHhhhc----CCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 344667799999 999 999999997765444 34455578899999999999999999754
No 187
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=94.26 E-value=0.066 Score=63.07 Aligned_cols=72 Identities=15% Similarity=0.337 Sum_probs=53.6
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCccc-chhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhCC
Q 007179 47 RLQTFFDMVDKDADGRITEDEVREIISLSASANKLS-NIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAP 120 (614)
Q Consensus 47 kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~-~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~~ 120 (614)
+...+|+.||++.+|.++.++|+.+++..-. .++ .-+.+.+-..++++...|++.+|+|+.+|+...|-+..
T Consensus 2254 EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY--~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~E 2326 (2399)
T KOG0040|consen 2254 EFSMMFKHFDKEKNGRLDHQHFKSCLRSLGY--DLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKE 2326 (2399)
T ss_pred HHHHHHHHhchhhccCCcHHHHHHHHHhcCC--CCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcc
Confidence 3457899999999999999999999983111 110 00111223677889999999999999999999887653
No 188
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=92.75 E-value=0.52 Score=38.15 Aligned_cols=67 Identities=18% Similarity=0.410 Sum_probs=46.2
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcCCC----CCCceeHHHHHHHHHhCC
Q 007179 47 RLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPD----HLGCIMIDNLEMLLLQAP 120 (614)
Q Consensus 47 kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D~d----~~G~It~eef~~~l~~~~ 120 (614)
+++.+|+.|-. +.+.++.++|..+|+..-..... .++.++++++.+..+ .++.+|+++|...|....
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~------~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~ 71 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRL------TDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDE 71 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTS------SHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTT
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccC------cHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCc
Confidence 47889999954 78899999999999732222122 244455556555432 578999999999986543
No 189
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=92.58 E-value=0.91 Score=37.35 Aligned_cols=73 Identities=10% Similarity=0.164 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhc-----cCcccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhC
Q 007179 45 DSRLQTFFDMVDKDADGRITEDEVREIISLSAS-----ANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQA 119 (614)
Q Consensus 45 ~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~-----~~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~ 119 (614)
+||.+.+|+.+ .|++|.++...|..++...+. .....+.. ++..++..|+... .+-.|+.++|.+.+...
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~--~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGY--IEPSVRSCFQQVQ--LSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT----HHHHHHHHHHTT--T-S-B-HHHHHHHHHT-
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccC--cHHHHHHHhcccC--CCCccCHHHHHHHHHhC
Confidence 68999999999 689999999999988873221 11112222 6778889999873 55679999999999887
Q ss_pred Ccc
Q 007179 120 PAQ 122 (614)
Q Consensus 120 ~~~ 122 (614)
|--
T Consensus 77 Pq~ 79 (90)
T PF09069_consen 77 PQS 79 (90)
T ss_dssp -TT
T ss_pred CCe
Confidence 643
No 190
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=92.58 E-value=0.55 Score=52.61 Aligned_cols=99 Identities=14% Similarity=0.253 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHHhcccCCCC-CcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCcccc
Q 007179 5 SKDFAVELFDALTRRRNIQG-DTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSN 83 (614)
Q Consensus 5 ~~~~~~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~~~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~~ 83 (614)
.+..+..+|+..| +++ |.++++|-..++..+...-.+.+++.+|+..|..+++++..+++..+-.. ...
T Consensus 134 ~~~wi~~~~~~ad----~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~------~~~ 203 (746)
T KOG0169|consen 134 REHWIHSIFQEAD----KNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKE------LTK 203 (746)
T ss_pred HHHHHHHHHHHHc----cccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHh------hcc
Confidence 4455788899999 999 99999999999988877777889999999999999999999999888752 110
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhC
Q 007179 84 IQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQA 119 (614)
Q Consensus 84 ~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~ 119 (614)
+.++..+|..+-.+ +++++.+++..++++.
T Consensus 204 -----rpev~~~f~~~s~~-~~~ls~~~L~~Fl~~~ 233 (746)
T KOG0169|consen 204 -----RPEVYFLFVQYSHG-KEYLSTDDLLRFLEEE 233 (746)
T ss_pred -----CchHHHHHHHHhCC-CCccCHHHHHHHHHHh
Confidence 00233555554433 6777877777777655
No 191
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.44 E-value=0.45 Score=40.30 Aligned_cols=56 Identities=20% Similarity=0.230 Sum_probs=40.4
Q ss_pred HHHHHHhcccCCCC-CcccHHHHHHHHHHhcC----------CChHHHHHHHHH----HhcCCCCCceeHHHHHH
Q 007179 11 ELFDALTRRRNIQG-DTITKDQLREFWDQISD----------QSFDSRLQTFFD----MVDKDADGRITEDEVRE 70 (614)
Q Consensus 11 ~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~~~----------~~~~~kl~~~F~----~~D~d~dG~I~~~E~~~ 70 (614)
..|+.-| -|+ +.++--|+++++...-. -++|.++..+.+ --|.|+||.|+..||.+
T Consensus 71 HYF~MHD----ldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK 141 (144)
T KOG4065|consen 71 HYFSMHD----LDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLK 141 (144)
T ss_pred hhhhhhc----cCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHh
Confidence 5577777 888 99999999999865421 123555555544 45889999999999854
No 192
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=91.22 E-value=0.36 Score=42.66 Aligned_cols=74 Identities=20% Similarity=0.265 Sum_probs=50.1
Q ss_pred HhcCCChHHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHH
Q 007179 38 QISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLL 117 (614)
Q Consensus 38 ~~~~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~ 117 (614)
.+..++..+++. +++-.||+|.+++++|..++.. +++.... +--+.-.|+-.|.|+|+.|--+++.+.+.
T Consensus 66 ELkenpfk~ri~---e~FSeDG~GnlsfddFlDmfSV-~sE~APr------dlK~~YAFkIYDfd~D~~i~~~DL~~~l~ 135 (189)
T KOG0038|consen 66 ELKENPFKRRIC---EVFSEDGRGNLSFDDFLDMFSV-FSEMAPR------DLKAKYAFKIYDFDGDEFIGHDDLEKTLT 135 (189)
T ss_pred hhhcChHHHHHH---HHhccCCCCcccHHHHHHHHHH-HHhhChH------HhhhhheeEEeecCCCCcccHHHHHHHHH
Confidence 344445555554 5566899999999999988852 1111111 11123467889999999999999999887
Q ss_pred hCCc
Q 007179 118 QAPA 121 (614)
Q Consensus 118 ~~~~ 121 (614)
....
T Consensus 136 ~lTr 139 (189)
T KOG0038|consen 136 SLTR 139 (189)
T ss_pred HHhh
Confidence 7543
No 193
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=90.33 E-value=0.3 Score=49.26 Aligned_cols=63 Identities=17% Similarity=0.215 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhC
Q 007179 45 DSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQA 119 (614)
Q Consensus 45 ~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~ 119 (614)
...+..||..+|.|.||.++..|++.+-. +..|.=++..|...|...||.|+-.|+-.-+...
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~l------------dknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~ 311 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAIEL------------DKNEACIKPFFNSCDTYKDGSISTNEWCYCFQKS 311 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhhhc------------cCchhHHHHHHhhhcccccCccccchhhhhhccC
Confidence 57899999999999999999999987652 1234456678999999999999999998877654
No 194
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=89.97 E-value=0.82 Score=48.90 Aligned_cols=62 Identities=23% Similarity=0.242 Sum_probs=49.2
Q ss_pred HHHHHHHHHhcccCCCCCcccHHHHHHHHHHhcCCC---hHHHHHHHHHHhcCCCCCceeHHHHHHHHH
Q 007179 8 FAVELFDALTRRRNIQGDTITKDQLREFWDQISDQS---FDSRLQTFFDMVDKDADGRITEDEVREIIS 73 (614)
Q Consensus 8 ~~~~~f~~~D~~~~~~~G~I~~~ef~~~l~~~~~~~---~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~ 73 (614)
.+++-|..+| .+.|+|+..|+..++.+.+... .+++++.+....+.|.+|.|++|||..+.-
T Consensus 20 ~l~~kF~~~d----~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~ 84 (627)
T KOG0046|consen 20 ELKEKFNKLD----DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFL 84 (627)
T ss_pred HHHHHHHhhc----CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHH
Confidence 3455566555 4449999999999998865443 478899999999999999999999988553
No 195
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=89.82 E-value=0.17 Score=50.60 Aligned_cols=69 Identities=13% Similarity=0.166 Sum_probs=52.3
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhCCcc
Q 007179 47 RLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQ 122 (614)
Q Consensus 47 kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~~~~ 122 (614)
-+..-|..+|+|+++.|++.|.+-+=+...... ...+=..++|+..|.|+|..||++|++.-|...++.
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s-------~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~~~ 402 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKS-------KPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEKER 402 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhc-------cHHHHhhhcchhcccCCCceecHHHHhhhhcccccc
Confidence 467889999999999999998765443211111 123445588999999999999999999988776654
No 196
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=89.75 E-value=0.86 Score=36.86 Aligned_cols=61 Identities=15% Similarity=0.335 Sum_probs=49.5
Q ss_pred HHHHHHHHhcccCCCCCcccHHHHHHHHHHhcCC--ChHHHHHHHHHHhcCC----CCCceeHHHHHHHHH
Q 007179 9 AVELFDALTRRRNIQGDTITKDQLREFWDQISDQ--SFDSRLQTFFDMVDKD----ADGRITEDEVREIIS 73 (614)
Q Consensus 9 ~~~~f~~~D~~~~~~~G~I~~~ef~~~l~~~~~~--~~~~kl~~~F~~~D~d----~dG~I~~~E~~~~l~ 73 (614)
++.+|+.+. .+++.+|.++|...|..-... .+.+.++.+++.|..+ ..+.++.++|..+|.
T Consensus 2 i~~if~~ys----~~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~ 68 (83)
T PF09279_consen 2 IEEIFRKYS----SDKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLF 68 (83)
T ss_dssp HHHHHHHHC----TTSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHH
T ss_pred HHHHHHHHh----CCCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHC
Confidence 577888887 645999999999999775544 3678899999999665 479999999999996
No 197
>PLN02952 phosphoinositide phospholipase C
Probab=88.39 E-value=2.6 Score=47.06 Aligned_cols=91 Identities=11% Similarity=0.146 Sum_probs=60.2
Q ss_pred CcccHHHHHHHHHHhcCC--ChHHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcC--
Q 007179 25 DTITKDQLREFWDQISDQ--SFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELD-- 100 (614)
Q Consensus 25 G~I~~~ef~~~l~~~~~~--~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D-- 100 (614)
|.++++||....+.+... .+.++++.+|+.|-. +++.++.+||..++...-.+...+ .+.++++++++++...
T Consensus 15 g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~--~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 15 GSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCT--LAEAQRIVEEVINRRHHV 91 (599)
T ss_pred CCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCC--HHHHHHHHHHHHhhcccc
Confidence 899999998877766432 356789999999954 446899999999997322222122 2334444444443322
Q ss_pred -CCCCCceeHHHHHHHHHh
Q 007179 101 -PDHLGCIMIDNLEMLLLQ 118 (614)
Q Consensus 101 -~d~~G~It~eef~~~l~~ 118 (614)
..+.+.+++++|...|..
T Consensus 92 ~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred ccccccCcCHHHHHHHHcC
Confidence 223456999999998864
No 198
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.91 E-value=0.85 Score=48.25 Aligned_cols=66 Identities=18% Similarity=0.335 Sum_probs=55.2
Q ss_pred cchHHHHHHHHHHHhcccCCCC-CcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCceeHHHHHHHHHh
Q 007179 3 KDSKDFAVELFDALTRRRNIQG-DTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISL 74 (614)
Q Consensus 3 ~~~~~~~~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~~~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~ 74 (614)
.+..||+.+-|+.+. .|- |.|+-..-++.+.+. ..+-+++..+.++.|.|+||-++.+||...+.+
T Consensus 227 ~EQReYYvnQFrtvQ----pDp~gfisGsaAknFFtKS--klpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 227 PEQREYYVNQFRTVQ----PDPHGFISGSAAKNFFTKS--KLPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred HHHHHHHHhhhhccc----CCcccccccHHHHhhhhhc--cCchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 456778888898888 887 999988888887764 345678999999999999999999999988863
No 199
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=87.75 E-value=2.1 Score=45.34 Aligned_cols=100 Identities=18% Similarity=0.264 Sum_probs=74.2
Q ss_pred HHHHHHHhcccCCCC-CcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCccc------
Q 007179 10 VELFDALTRRRNIQG-DTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLS------ 82 (614)
Q Consensus 10 ~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~~~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~------ 82 (614)
-.+|..++ .+. |.|+...|.+++... .....+.+..++..++..+.|++..++|+..++..+..-.+.
T Consensus 142 ~~~f~k~~----~d~~g~it~~~Fi~~~~~~-~~l~~t~~~~~v~~l~~~~~~yl~q~df~~~Lqeli~Thpl~~l~~~p 216 (493)
T KOG2562|consen 142 ASTFRKID----GDDTGHITRDKFINYWMRG-LMLTHTRLEQFVNLLIQAGCSYLRQDDFKPYLQELIATHPLEFLDEEP 216 (493)
T ss_pred hhhhhhhc----cCcCCceeHHHHHHHHHhh-hhHHHHHHHHHHHHHhccCccceeccccHHHHHHHHhcCCchhhccCh
Confidence 45677788 888 999999999987652 223456788899999999999999999999998433322221
Q ss_pred -chhHHHHHHHHHHHHHcCCCCCCceeHHHHHH
Q 007179 83 -NIQKQAEEYAALIMEELDPDHLGCIMIDNLEM 114 (614)
Q Consensus 83 -~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~ 114 (614)
+.+.-++-.+.++|=-+|+...|.|+..|...
T Consensus 217 Ef~~~Y~~tvi~rIFy~~nrs~tG~iti~el~~ 249 (493)
T KOG2562|consen 217 EFQERYAETVIQRIFYYLNRSRTGRITIQELLR 249 (493)
T ss_pred hHHHHHHHHHhhhhheeeCCccCCceeHHHHHH
Confidence 12233444567777788999999999988753
No 200
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.58 E-value=2.2 Score=48.77 Aligned_cols=64 Identities=17% Similarity=0.297 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhcccCCCCCcccHHHHHHHHHHhc--------CCChHHHHHHHHHHhcCCCCCceeHHHHHHHHH
Q 007179 6 KDFAVELFDALTRRRNIQGDTITKDQLREFWDQIS--------DQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 73 (614)
Q Consensus 6 ~~~~~~~f~~~D~~~~~~~G~I~~~ef~~~l~~~~--------~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~ 73 (614)
+.-++-+|+..| ...|.++.+|+.+.+.... ....++....+++..|.++.|++..+++..++.
T Consensus 17 d~~l~~~f~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ll~ 88 (646)
T KOG0039|consen 17 DDKLQTFFDMYD----KGDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYITNEDLEILLL 88 (646)
T ss_pred hHHHHHHHHHHh----hhcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccceeeecchhHHHH
Confidence 334688888888 5338999999888765431 223345667789999999999999998888874
No 201
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=86.58 E-value=1.1 Score=37.24 Aligned_cols=57 Identities=19% Similarity=0.276 Sum_probs=32.3
Q ss_pred HHHHHHHHhcccCCCCCcccHHHHHHHHHHhcCCChHHHHHHHHHHhcC---CCCCceeHHHHHHHHH
Q 007179 9 AVELFDALTRRRNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDK---DADGRITEDEVREIIS 73 (614)
Q Consensus 9 ~~~~f~~~D~~~~~~~G~I~~~ef~~~l~~~~~~~~~~kl~~~F~~~D~---d~dG~I~~~E~~~~l~ 73 (614)
+++=|+.+. . .|.+..++|-+|+- ..+++|-...+|+..-. -..+.|+++|++.+..
T Consensus 32 VE~RFd~La----~-dG~L~rs~Fg~CIG---M~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~ 91 (100)
T PF08414_consen 32 VEKRFDKLA----K-DGLLPRSDFGECIG---MKDSKEFAGELFDALARRRGIKGDSITKDELKEFWE 91 (100)
T ss_dssp HHHHHHHH-----B-TTBEEGGGHHHHHT-----S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHH
T ss_pred HHHHHHHhC----c-CCcccHHHHHHhcC---CcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHH
Confidence 344455554 3 36778888876653 23556677777777622 1245788888887764
No 202
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=86.56 E-value=5.7 Score=36.72 Aligned_cols=68 Identities=13% Similarity=0.178 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhcc-CcccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHH
Q 007179 45 DSRLQTFFDMVDKDADGRITEDEVREIISLSASA-NKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEML 115 (614)
Q Consensus 45 ~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~-~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~ 115 (614)
.++.+.+|..|++.+.+.++..|+.+|++..... ...+-.....| =..++ .+-+|+||.+..|+.+.+
T Consensus 95 p~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~E--W~~~y-~L~~d~dG~l~Ke~iR~v 163 (174)
T PF05042_consen 95 PQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFE--WGALY-ILAKDKDGFLSKEDIRGV 163 (174)
T ss_pred HHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhH--HHHHH-HHHcCcCCcEeHHHHhhh
Confidence 4789999999999999999999999999842211 11111111111 11222 234678999999887664
No 203
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=84.65 E-value=2.7 Score=46.02 Aligned_cols=35 Identities=23% Similarity=0.398 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHcCCCCCCceeHHHHHHHHHhCCcc
Q 007179 88 AEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQ 122 (614)
Q Consensus 88 ~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~~~~ 122 (614)
.-+.+..+|..+|.|+||.++-+|+..+.+..|+-
T Consensus 313 ~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~ 347 (625)
T KOG1707|consen 313 GYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGS 347 (625)
T ss_pred HHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCC
Confidence 34556778999999999999999999999998864
No 204
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=83.08 E-value=1.6 Score=51.19 Aligned_cols=63 Identities=10% Similarity=0.164 Sum_probs=49.2
Q ss_pred HHHHhcCCCCCceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhCCcc
Q 007179 51 FFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQ 122 (614)
Q Consensus 51 ~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~~~~ 122 (614)
.|+.||.||.|.|++.||.+.|.. - +.-.+.+++-+...+..|.+...+|+||.+-+.+...+
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~------~---k~ytqse~dfllscae~dend~~~y~dfv~rfhepakd 4124 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEG------H---KHYTQSEIDFLLSCAEADENDMFDYEDFVDRFHEPAKD 4124 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhc------c---ccchhHHHHHHHHhhccCccccccHHHHHHHhcCchhh
Confidence 488899999999999999999862 1 12234556678888888999999999999887665444
No 205
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=79.90 E-value=1.3 Score=44.60 Aligned_cols=61 Identities=20% Similarity=0.305 Sum_probs=45.7
Q ss_pred HHHHHHHHhcccCCCC-CcccHHHHHHHHHHh-cCCChHHHHHHHHHHhcCCCCCceeHHHHHHHHH
Q 007179 9 AVELFDALTRRRNIQG-DTITKDQLREFWDQI-SDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 73 (614)
Q Consensus 9 ~~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~-~~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~ 73 (614)
+.=.|+.+| +|. +.|+..|++-.=+.+ ....+..=.+.+|+.+|.|+|..|+.+|++..+.
T Consensus 335 v~w~F~qLd----kN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~ 397 (421)
T KOG4578|consen 335 VHWYFNQLD----KNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLG 397 (421)
T ss_pred eeeeeeeec----ccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhc
Confidence 334578888 888 888888865543322 2334555578899999999999999999998886
No 206
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=79.84 E-value=15 Score=41.74 Aligned_cols=99 Identities=12% Similarity=0.236 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhcccCCCC-CcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCcccchh
Q 007179 7 DFAVELFDALTRRRNIQG-DTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQ 85 (614)
Q Consensus 7 ~~~~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~~~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~~~~ 85 (614)
.++.++|+..| ..+ +++..+++..........+ ++..+|..|-.+ .+.++.+++..++...-.+.+..
T Consensus 172 ~~~~~~f~e~~----~~~~~k~~~~~~~~~~~~~~~rp---ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~--- 240 (746)
T KOG0169|consen 172 SKARRLFKESD----NSQTGKLEEEEFVKFRKELTKRP---EVYFLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGAT--- 240 (746)
T ss_pred HHHHHHHHHHH----hhccceehHHHHHHHHHhhccCc---hHHHHHHHHhCC-CCccCHHHHHHHHHHhccccccc---
Confidence 35678888877 667 9999999999877765554 688888888654 88999999999997432222222
Q ss_pred HHHHHHHHHHHHHcC----CCCCCceeHHHHHHHHHhC
Q 007179 86 KQAEEYAALIMEELD----PDHLGCIMIDNLEMLLLQA 119 (614)
Q Consensus 86 ~~~~~~~~~lf~~~D----~d~~G~It~eef~~~l~~~ 119 (614)
.+.++++.+.+. .-+.+.++.+.|.+.|-..
T Consensus 241 ---~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S~ 275 (746)
T KOG0169|consen 241 ---LDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFSP 275 (746)
T ss_pred ---HHHHHHHHHHhhhhhhccccceecHHHHHHHhcCc
Confidence 333444444432 3356679999998888543
No 207
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.49 E-value=1.7 Score=48.54 Aligned_cols=61 Identities=20% Similarity=0.299 Sum_probs=47.9
Q ss_pred HHHHHHHHHhcCCCCCceeHHHHHHHHH-hhhccCcccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHH
Q 007179 46 SRLQTFFDMVDKDADGRITEDEVREIIS-LSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLL 117 (614)
Q Consensus 46 ~kl~~~F~~~D~d~dG~I~~~E~~~~l~-~~~~~~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~ 117 (614)
-|.+.+|+..|+...|+++-..-+..+. +.++.+. +..|....|.|+||.++.|||.-.|.
T Consensus 195 lKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~Lpq~~-----------LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 195 LKYRQLFNALDKTRSGYLSGQQARSALGQSGLPQNQ-----------LAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred hHHHHHhhhcccccccccccHHHHHHHHhcCCchhh-----------HhhheeeeccCCCCcccHHHHHHHHH
Confidence 4667899999999999999888887775 3333233 34788889999999999999976554
No 208
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=75.60 E-value=13 Score=34.09 Aligned_cols=68 Identities=9% Similarity=0.137 Sum_probs=43.7
Q ss_pred HHHHHHh---cCCCCCceeHHHHHHHHHhh-hccCcccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhCCcc
Q 007179 49 QTFFDMV---DKDADGRITEDEVREIISLS-ASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQ 122 (614)
Q Consensus 49 ~~~F~~~---D~d~dG~I~~~E~~~~l~~~-~~~~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~~~~ 122 (614)
+.+|+.| -..+...++-..|.++++.+ +.... .....++-+|..+-..+...|+|++|+..|.+....
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k------~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~~ 73 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKK------LTSTDVDIIFSKVKAKGARKITFEQFLEALAELAEK 73 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SS------S-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCC------CchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHH
Confidence 4455555 34455678888899998832 22222 345667788988766666679999999999765443
No 209
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=72.74 E-value=6.7 Score=39.72 Aligned_cols=68 Identities=12% Similarity=0.111 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhC
Q 007179 45 DSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQA 119 (614)
Q Consensus 45 ~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~ 119 (614)
.++++.+|..||.+++|.++.-|-..-+. .+.+ .....+.++-.|+.++.+.||.+.-++|.-+++-.
T Consensus 258 sd~l~~~f~LFde~~tg~~D~re~v~~la-vlc~------p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~ 325 (412)
T KOG4666|consen 258 SDKLAPTFMLFDEGTTGNGDYRETVKTLA-VLCG------PPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVV 325 (412)
T ss_pred hhhhhhhhheecCCCCCcccHHHHhhhhe-eeeC------CCCcHHHHHHHHHhcccccccccchHHHHHHHHHh
Confidence 47899999999999999999766443332 1111 12345677788999999999999999998888754
No 210
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=71.87 E-value=15 Score=33.95 Aligned_cols=59 Identities=19% Similarity=0.354 Sum_probs=44.0
Q ss_pred HHHHHHHhcccCCCC-CcccHHHHHHHHHHhcC-CC------hHHHHHHHHHHhcCCCCCceeHHHHHHHHH
Q 007179 10 VELFDALTRRRNIQG-DTITKDQLREFWDQISD-QS------FDSRLQTFFDMVDKDADGRITEDEVREIIS 73 (614)
Q Consensus 10 ~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~~~-~~------~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~ 73 (614)
+++|+.++ +.+ +.+|+.|+..++..-.. .+ ..-+...++.+. .|.||.+.+|+++.+..
T Consensus 99 e~iF~kya----~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vYD 165 (174)
T PF05042_consen 99 EEIFSKYA----KTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGVYD 165 (174)
T ss_pred HHHHHHhC----CCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhhcc
Confidence 88999988 777 89999999999976322 12 233455555554 57789999999998874
No 211
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=70.45 E-value=36 Score=31.16 Aligned_cols=65 Identities=12% Similarity=0.242 Sum_probs=46.7
Q ss_pred HHHHHHHHhcccCCCCCcccHHHHHHHHHHhc---CCChHHHHHHHHHHhcCCCCCceeHHHHHHHHH
Q 007179 9 AVELFDALTRRRNIQGDTITKDQLREFWDQIS---DQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 73 (614)
Q Consensus 9 ~~~~f~~~D~~~~~~~G~I~~~ef~~~l~~~~---~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~ 73 (614)
++++|..|-..-..+...++-..|.++|...+ ..-+...+..+|..+-..+...|++++|...|.
T Consensus 1 L~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~ 68 (154)
T PF05517_consen 1 LEAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALA 68 (154)
T ss_dssp HHHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHH
Confidence 46778887422213338899999999998653 335677899999998777777899999998886
No 212
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=67.30 E-value=4.9 Score=40.93 Aligned_cols=57 Identities=19% Similarity=0.266 Sum_probs=45.7
Q ss_pred HHHHHHHHhcccCCCC-CcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCceeHHHHHHHHH
Q 007179 9 AVELFDALTRRRNIQG-DTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 73 (614)
Q Consensus 9 ~~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~~~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~ 73 (614)
+-=+|+.+| .|. +.++..|+..+ -....|.=++-+|+++|...||.|+-+|.-..+.
T Consensus 252 ~gWMFnklD----~N~Dl~Ld~sEl~~I----~ldknE~CikpFfnsCD~~kDg~iS~~EWC~CF~ 309 (434)
T KOG3555|consen 252 LGWMFNKLD----TNYDLLLDQSELRAI----ELDKNEACIKPFFNSCDTYKDGSISTNEWCYCFQ 309 (434)
T ss_pred hhhhhhccc----cccccccCHHHhhhh----hccCchhHHHHHHhhhcccccCccccchhhhhhc
Confidence 456788888 888 99999998554 2233456688999999999999999999887775
No 213
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.78 E-value=6.5 Score=44.22 Aligned_cols=59 Identities=24% Similarity=0.330 Sum_probs=49.3
Q ss_pred HHHHHHHHhcccCCCC-CcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCceeHHHHHHHHH
Q 007179 9 AVELFDALTRRRNIQG-DTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 73 (614)
Q Consensus 9 ~~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~~~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~ 73 (614)
+.++|+.+| +.. |++|-..-..+|-+. +.+...+..+..+-|.|+||+++.+||.-.|-
T Consensus 197 Y~QlFNa~D----ktrsG~Lsg~qaR~aL~qS--~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 197 YRQLFNALD----KTRSGYLSGQQARSALGQS--GLPQNQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred HHHHhhhcc----cccccccccHHHHHHHHhc--CCchhhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 589999999 887 999998888877653 34677788999999999999999999965553
No 214
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.22 E-value=17 Score=38.96 Aligned_cols=66 Identities=21% Similarity=0.231 Sum_probs=50.0
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhCCcc
Q 007179 47 RLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQ 122 (614)
Q Consensus 47 kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~~~~ 122 (614)
..-.-|+..-.|-+|+|+-.--+.++.. .++. .+++..|.+..|.|+||.+|.+||...+.-.-..
T Consensus 232 YYvnQFrtvQpDp~gfisGsaAknFFtK----Sklp------i~ELshIWeLsD~d~DGALtL~EFcAAfHLVVaR 297 (737)
T KOG1955|consen 232 YYVNQFRTVQPDPHGFISGSAAKNFFTK----SKLP------IEELSHIWELSDVDRDGALTLSEFCAAFHLVVAR 297 (737)
T ss_pred HHHhhhhcccCCcccccccHHHHhhhhh----ccCc------hHHHHHHHhhcccCccccccHHHHHhhHhheeec
Confidence 3455688888899999998877777642 2333 3456689999999999999999999888654433
No 215
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=63.74 E-value=1e+02 Score=27.12 Aligned_cols=102 Identities=15% Similarity=0.197 Sum_probs=61.3
Q ss_pred HHHHHHHhcccCCCC-CcccHHHHHHHHHH--hcCC-----ChHHHHHHHHHHhcCCC--CCceeHHHHHHHHHhhh---
Q 007179 10 VELFDALTRRRNIQG-DTITKDQLREFWDQ--ISDQ-----SFDSRLQTFFDMVDKDA--DGRITEDEVREIISLSA--- 76 (614)
Q Consensus 10 ~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~--~~~~-----~~~~kl~~~F~~~D~d~--dG~I~~~E~~~~l~~~~--- 76 (614)
.++++.++ + +.|-+..+..+++. +.+. -+-..+..+|+....+. |..++..|+..++....
T Consensus 3 ~~l~~~l~------~~n~IrfsaYRtA~KLR~lQk~~~l~lv~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l 76 (127)
T PF09068_consen 3 TELMQELQ------DFNNIRFSAYRTAMKLRFLQKRLCLDLVDLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFL 76 (127)
T ss_dssp HHHHHHGG------GGTT-SSHHHHHHHHHHHHHHHTTGGG--HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH------HHhhHHHHHhHHHHHHHHHHHHHhheeeeHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHH
Confidence 45666665 4 57889999998753 2211 23356677888877664 57899999999987322
Q ss_pred c--cCcccch-----hHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHH
Q 007179 77 S--ANKLSNI-----QKQAEEYAALIMEELDPDHLGCIMIDNLEMLLL 117 (614)
Q Consensus 77 ~--~~~~~~~-----~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~ 117 (614)
. ....... +.-++-.+.-+...+|++++|.|+.-+|+..+.
T Consensus 77 ~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~KvaL~ 124 (127)
T PF09068_consen 77 NKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFKVALI 124 (127)
T ss_dssp HHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHHHHHH
T ss_pred HHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHHHHHH
Confidence 1 1111111 244455666677889999999999999987764
No 216
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=62.80 E-value=32 Score=40.10 Aligned_cols=95 Identities=12% Similarity=0.149 Sum_probs=63.9
Q ss_pred HHHHHHHHHhcccCCCC-CcccHHHHHHHHHHhcCCChH--HHHHHHHHHh---cCCCCCceeHHHHHHHHHhhhccCcc
Q 007179 8 FAVELFDALTRRRNIQG-DTITKDQLREFWDQISDQSFD--SRLQTFFDMV---DKDADGRITEDEVREIISLSASANKL 81 (614)
Q Consensus 8 ~~~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~~~~~~~--~kl~~~F~~~---D~d~dG~I~~~E~~~~l~~~~~~~~~ 81 (614)
.++.+|+.+| +.. |..+.++|..++..++....+ +-+..+|.+. |.+..|.++..|+...|......
T Consensus 748 ElrAle~~~~----~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~--- 820 (890)
T KOG0035|consen 748 ELRALENEQD----KIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYED--- 820 (890)
T ss_pred HHHHHHhHHH----HhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhh---
Confidence 3588999999 777 899999999999988877543 3355666665 55667899999999988632211
Q ss_pred cchhHHHHHHHHHHHHHcCCCCCCceeHHHHHH
Q 007179 82 SNIQKQAEEYAALIMEELDPDHLGCIMIDNLEM 114 (614)
Q Consensus 82 ~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~ 114 (614)
.+ .+.-+-.-|+.+-+++. +|..+|+..
T Consensus 821 --l~--~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 821 --LD--TELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred --hc--HHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 01 11222233555544444 688888876
No 217
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=60.17 E-value=46 Score=27.80 Aligned_cols=66 Identities=20% Similarity=0.241 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhCCc
Q 007179 46 SRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPA 121 (614)
Q Consensus 46 ~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~~~ 121 (614)
.+++.=|+.+-. ||.+.+++|-+++- +.+.++-..++.+.+=+.-... .+.||.+|++....+..+
T Consensus 30 ~~VE~RFd~La~--dG~L~rs~Fg~CIG-------M~dSkeFA~eLFdALaRrr~i~-~~~I~k~eL~efW~qisD 95 (100)
T PF08414_consen 30 KEVEKRFDKLAK--DGLLPRSDFGECIG-------MKDSKEFAGELFDALARRRGIK-GDSITKDELKEFWEQISD 95 (100)
T ss_dssp HHHHHHHHHH-B--TTBEEGGGHHHHHT---------S-HHHHHHHHHHHHHHTT---SSEE-HHHHHHHHHHHH-
T ss_pred HHHHHHHHHhCc--CCcccHHHHHHhcC-------CcccHHHHHHHHHHHHHhcCCc-cCCcCHHHHHHHHHHhhc
Confidence 456667777766 89999999999984 3333333333333333333333 577999999998877644
No 218
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=57.34 E-value=18 Score=40.31 Aligned_cols=59 Identities=19% Similarity=0.198 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcCCCCCCceeHHHH
Q 007179 45 DSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNL 112 (614)
Q Consensus 45 ~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef 112 (614)
..-+..+|+..|.+++|.|++.++..-+..... .++-+-+.-+|+.+|.+.+ ..+.||-
T Consensus 554 ~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~--------~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 554 LIFLERLFRLLDDSMTGLLTFKDLVSGLSILKA--------GDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHHhcccCCcceeEHHHHHHHHHHHHh--------hhHHHHHHHHHhhccCCcc-ccccccc
Confidence 456788999999999999999998777752111 1223334467888998888 7777665
No 219
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=56.20 E-value=17 Score=39.87 Aligned_cols=65 Identities=17% Similarity=0.206 Sum_probs=49.5
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhC
Q 007179 47 RLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQA 119 (614)
Q Consensus 47 kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~ 119 (614)
+.+.-|..+|.|+.|.++.++..+.|+... .+.+ ++..+++.+++|.+.+|.+..+||.+++...
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~--~~~d------~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~ 658 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSEN--VGWD------EDRLHEELQEADENLNGFVELREFLQLMSAI 658 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhc--CCCC------HHHHHHHHHHHHHhhcceeeHHHHHHHHHHH
Confidence 345679999999999999999999997322 1333 3344566777888889999999998888643
No 220
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=54.62 E-value=44 Score=29.95 Aligned_cols=70 Identities=7% Similarity=0.172 Sum_probs=38.6
Q ss_pred CcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCC-------CCceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHH
Q 007179 25 DTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDA-------DGRITEDEVREIISLSASANKLSNIQKQAEEYAALIME 97 (614)
Q Consensus 25 G~I~~~ef~~~l~~~~~~~~~~kl~~~F~~~D~d~-------dG~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~ 97 (614)
+.+|..||.+.=..+..+ ..|++...+.|..|| ++.|+.+.|+.+|+..+... + .++..+++|.
T Consensus 6 ~~lsp~eF~qLq~y~eys--~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d-~------P~~lc~hLF~ 76 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSEYS--TKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVD-L------PEDLCQHLFL 76 (138)
T ss_dssp S-S-HHHHHHHHHHHHH------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S---------HHHHHHHHH
T ss_pred eccCHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCC-C------CHHHHHHHHH
Confidence 678888887653332221 236666666664444 56899999999998555432 3 3678889998
Q ss_pred HcCCCC
Q 007179 98 ELDPDH 103 (614)
Q Consensus 98 ~~D~d~ 103 (614)
.+-...
T Consensus 77 sF~~~~ 82 (138)
T PF14513_consen 77 SFQKKP 82 (138)
T ss_dssp HS----
T ss_pred HHhCcc
Confidence 876433
No 221
>PF09842 DUF2069: Predicted membrane protein (DUF2069); InterPro: IPR018643 This family of prokaryotic proteins has no known function but is thought to be a membrane protein.
Probab=53.00 E-value=1.5e+02 Score=25.43 Aligned_cols=52 Identities=17% Similarity=0.102 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhccccceecccccccCCcCCccCCCCccccccccccchHHHHHHHHHHHHHHHhcchh
Q 007179 247 NFHKVIAVGISIGVGIHAISHLACDFPRLINASEEKYEPMEPYFGDQPKNYWHFVKSVEGVTGIVMVVLMAIAFTLATPW 326 (614)
Q Consensus 247 ~~Hr~~g~~~~~~~~iH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~s~~~ 326 (614)
.=|.|.+.++.+. .+|++.... . .+. ..+.|.+.+++.+.+++.++-+
T Consensus 54 ~t~~W~sfv~L~Y-F~~gv~~a~--------~--------------~~~---------~~~~a~~e~~ls~~lF~~~~~y 101 (109)
T PF09842_consen 54 YTYAWASFVILLY-FIHGVTRAW--------S--------------DPG---------ERWLAWLELLLSVLLFVGAMLY 101 (109)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHh--------c--------------Ccc---------hhHHHHHHHHHHHHHHHHHHHH
Confidence 5799999976665 578876541 1 000 0234666666667777788888
Q ss_pred Hhhc
Q 007179 327 FRRN 330 (614)
Q Consensus 327 iRr~ 330 (614)
+|.+
T Consensus 102 ~R~r 105 (109)
T PF09842_consen 102 ARWR 105 (109)
T ss_pred HHHH
Confidence 8865
No 222
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=46.13 E-value=43 Score=36.90 Aligned_cols=61 Identities=13% Similarity=0.103 Sum_probs=53.4
Q ss_pred HHHHHHHHhcccCCCC-CcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCceeHHHHHHHHH
Q 007179 9 AVELFDALTRRRNIQG-DTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 73 (614)
Q Consensus 9 ~~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~~~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~ 73 (614)
.+.-|..+| .|+ |.++.++..+.|+....+-+++.+....+.-|.+-+|++..+|+.+++.
T Consensus 595 ~~~rf~~lD----~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s 656 (680)
T KOG0042|consen 595 RKTRFAFLD----ADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMS 656 (680)
T ss_pred HHHHHHhhc----chHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHH
Confidence 456788899 888 9999999999999877677888999999999999999999999888875
No 223
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=45.49 E-value=1.5e+02 Score=24.13 Aligned_cols=62 Identities=13% Similarity=0.126 Sum_probs=41.7
Q ss_pred HHHHHHHHhcccCCCCCcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCceeHHHHHHHHHh
Q 007179 9 AVELFDALTRRRNIQGDTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISL 74 (614)
Q Consensus 9 ~~~~f~~~D~~~~~~~G~I~~~ef~~~l~~~~~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~ 74 (614)
+++.++..= .++--|...+|..+|.+.-.-+...+...+=...|.-.||+||.=||.-+.++
T Consensus 9 A~~FW~~~F----g~r~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRl 70 (85)
T PF02761_consen 9 AAEFWKTSF----GKRTIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTRL 70 (85)
T ss_dssp HHHHHHHHH----TT-SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHC----CCCeEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHHH
Confidence 355564433 23367999999999998655544444444555678899999999999888763
No 224
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=45.12 E-value=23 Score=23.78 Aligned_cols=20 Identities=5% Similarity=0.021 Sum_probs=14.8
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q 007179 245 NLNFHKVIAVGISIGVGIHA 264 (614)
Q Consensus 245 ~~~~Hr~~g~~~~~~~~iH~ 264 (614)
+...|+|+|..+.++..+=.
T Consensus 4 ~~~~H~W~Gl~~g~~l~~~~ 23 (37)
T PF13706_consen 4 LRKLHRWLGLILGLLLFVIF 23 (37)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35789999999877765433
No 225
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=44.80 E-value=1.3e+02 Score=24.58 Aligned_cols=70 Identities=14% Similarity=0.221 Sum_probs=52.1
Q ss_pred CcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHc
Q 007179 25 DTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEEL 99 (614)
Q Consensus 25 G~I~~~ef~~~l~~~~~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~ 99 (614)
..||.+|++..-.+.+-+-+++.++.+.+..-.+.=.--+.+|-..+++.-. ... +..+-..++.+|+++
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia---~iT--~p~ta~~vn~Lf~qf 82 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIA---KIT--SPQTAKQVNELFEQF 82 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH---Hhc--CHHHHHHHHHHHHHH
Confidence 6899999999999888888888899999988766666777888888886211 111 344566677777764
No 226
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=43.94 E-value=56 Score=27.67 Aligned_cols=69 Identities=12% Similarity=0.171 Sum_probs=44.0
Q ss_pred HHhcCCCCCceeHHHHHHHHHhhhc----cCcccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhCCccc
Q 007179 53 DMVDKDADGRITEDEVREIISLSAS----ANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQS 123 (614)
Q Consensus 53 ~~~D~d~dG~I~~~E~~~~l~~~~~----~~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~~~~~ 123 (614)
+.||++.+-+|+.++++.+++.... ..+.+ ++.+...+-.++-+-...+...++.+=+.++++-....+
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTg--eDiT~~iL~QII~E~E~~g~~~lp~~~L~qlIr~yg~~~ 82 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSG--DDLTRSILLQIIAEEESGGEPVLSTDFLTQIIRFYGGSM 82 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCC--chhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhChhH
Confidence 4689999999999999999983211 11222 455556655665555555566677766677666554443
No 227
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=43.42 E-value=21 Score=27.11 Aligned_cols=21 Identities=14% Similarity=0.439 Sum_probs=18.6
Q ss_pred HHhcCCCCCceeHHHHHHHHH
Q 007179 53 DMVDKDADGRITEDEVREIIS 73 (614)
Q Consensus 53 ~~~D~d~dG~I~~~E~~~~l~ 73 (614)
+.||...+.+|+.++++++++
T Consensus 10 RLYDT~~s~YiTL~di~~lV~ 30 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVR 30 (64)
T ss_pred ccccCCCceeEeHHHHHHHHH
Confidence 468999999999999999997
No 228
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=43.31 E-value=74 Score=37.26 Aligned_cols=91 Identities=13% Similarity=0.071 Sum_probs=61.9
Q ss_pred HHHHHHHHHhcCCCh---HHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcCCCCCCc
Q 007179 30 DQLREFWDQISDQSF---DSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGC 106 (614)
Q Consensus 30 ~ef~~~l~~~~~~~~---~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D~d~~G~ 106 (614)
+.+..++.+-.++.. .++++.+|+-+|+.+.|..+.+|+...+...-. ...+ +++..++...+....|.+..|.
T Consensus 728 ~~en~il~R~sk~~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~--~~e~-ee~~~~e~~~lvn~~n~l~~~q 804 (890)
T KOG0035|consen 728 ESENEILERDSKGTSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGY--NTEE-EEQGIAEWFRLVNKKNPLIQGQ 804 (890)
T ss_pred cHHHHHHHhcccchhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCc--ccch-hHHHHHHHHHHHhccCcccccc
Confidence 344445544444432 368899999999999999999999988852111 1111 3444555555666677777899
Q ss_pred eeHHHHHHHHHhCCccc
Q 007179 107 IMIDNLEMLLLQAPAQS 123 (614)
Q Consensus 107 It~eef~~~l~~~~~~~ 123 (614)
+++++|.+.|.+--+.+
T Consensus 805 v~~~e~~ddl~R~~e~l 821 (890)
T KOG0035|consen 805 VQLLEFEDDLEREYEDL 821 (890)
T ss_pred eeHHHHHhHhhhhhhhh
Confidence 99999999888765554
No 229
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=42.21 E-value=23 Score=27.66 Aligned_cols=46 Identities=9% Similarity=0.015 Sum_probs=34.8
Q ss_pred CcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCceeHHHHHHHHH
Q 007179 25 DTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 73 (614)
Q Consensus 25 G~I~~~ef~~~l~~~~~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~ 73 (614)
-.++|..+..+++..- +.+++..+.+.|+.=..++|+++||.+.++
T Consensus 7 p~~~F~~L~~~l~~~l---~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR 52 (70)
T PF12174_consen 7 PWMPFPMLFSALSKHL---PPSKMDLLQKHYEEFKKKKISREEFVRKLR 52 (70)
T ss_pred CcccHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 4577888877776543 445667777777777889999999998887
No 230
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=42.17 E-value=36 Score=38.53 Aligned_cols=105 Identities=7% Similarity=-0.014 Sum_probs=71.6
Q ss_pred HHHHHHHhcccCCCC-CcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCceeHHHHHHHHHhhh-------ccCcc
Q 007179 10 VELFDALTRRRNIQG-DTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISLSA-------SANKL 81 (614)
Q Consensus 10 ~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~~~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~-------~~~~~ 81 (614)
.=+++.|| +.. |.|..-+|+..+-.+++...+||++.+|+..-.++.-++ .-.|..++...+ .....
T Consensus 473 N~llNvyD----~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~aAf 547 (966)
T KOG4286|consen 473 NWLLNVYD----TGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVAAF 547 (966)
T ss_pred HHHHHhcc----cCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHHhh
Confidence 44568889 888 999999999999999999999999999999976766554 444444443100 00000
Q ss_pred cchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhCCccc
Q 007179 82 SNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQS 123 (614)
Q Consensus 82 ~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~~~~~ 123 (614)
+ -..++--++..|+ ..++.-.|++.+|.+-+.-.|-.+
T Consensus 548 G--gsNvepsvrsCF~--~v~~~pei~~~~f~dw~~~epqsm 585 (966)
T KOG4286|consen 548 G--GSNIEPSVRSCFQ--FVNNKPEIEAALFLDWMRLEPQSM 585 (966)
T ss_pred c--CCCCChHHHHHHH--hcCCCCcchHHHHHHHhccCcchh
Confidence 0 1112223456666 345666899999999888777554
No 231
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=41.91 E-value=74 Score=26.69 Aligned_cols=56 Identities=14% Similarity=0.156 Sum_probs=36.5
Q ss_pred CceeHHHHHHHHHhhhccCcccchhHHHHHHHH---HHHHHcCCCCCCceeHHHHHHHHHhCCccccc
Q 007179 61 GRITEDEVREIISLSASANKLSNIQKQAEEYAA---LIMEELDPDHLGCIMIDNLEMLLLQAPAQSVK 125 (614)
Q Consensus 61 G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~---~lf~~~D~d~~G~It~eef~~~l~~~~~~~~~ 125 (614)
...+.+|+..++...- .+ .++.++ ..+++.+.+....+|-+|..++|.++|..+++
T Consensus 34 ~~~~~~~l~~~~~~~~----~~-----~~~li~~~~~~~~~l~~~~~~~ls~~e~~~~l~~~p~LikR 92 (105)
T cd02977 34 EPPTKEELKELLAKLG----LG-----VEDLFNTRGTPYRKLGLADKDELSDEEALELMAEHPKLIKR 92 (105)
T ss_pred CCCCHHHHHHHHHhcC----CC-----HHHHHhcCCchHHHcCCccccCCCHHHHHHHHHhCcCeeeC
Confidence 4567788887775211 00 111111 45667666545678999999999999999764
No 232
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=41.82 E-value=76 Score=34.16 Aligned_cols=92 Identities=16% Similarity=0.162 Sum_probs=58.2
Q ss_pred HHHHHHHhcccCCCC-CcccHHHHHHHHHHhcCCChHHHHHHHHHH---hcC----C-CCCceeHHHHHHHHHhhhc---
Q 007179 10 VELFDALTRRRNIQG-DTITKDQLREFWDQISDQSFDSRLQTFFDM---VDK----D-ADGRITEDEVREIISLSAS--- 77 (614)
Q Consensus 10 ~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~~~~~~~~~kl~~~F~~---~D~----d-~dG~I~~~E~~~~l~~~~~--- 77 (614)
+-+|..+. ... +++.+-.|.++|.+.+-...+-+++.+++. +|. + ..+.+++|-|++.+..++.
T Consensus 89 DLLFyLia----egq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~sSI~lvS 164 (622)
T KOG0506|consen 89 DLLFYLIA----EGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFSSIVLVS 164 (622)
T ss_pred hhhhHHhh----cCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhccchhHHH
Confidence 44677777 666 999999999999998776666566666654 342 2 2457999999999873221
Q ss_pred ---cCc--ccchhHHHHHHHHHHHHHcCCCCCCc
Q 007179 78 ---ANK--LSNIQKQAEEYAALIMEELDPDHLGC 106 (614)
Q Consensus 78 ---~~~--~~~~~~~~~~~~~~lf~~~D~d~~G~ 106 (614)
.++ ++. =.+-...++++|+..-.-+.|.
T Consensus 165 qALrkqmVIPd-w~~Fts~I~tIFEscke~seG~ 197 (622)
T KOG0506|consen 165 QALRKQMVIPD-WEEFTSHIDTIFESCKESSEGK 197 (622)
T ss_pred HHHhcCccCCc-HHHHHHHHHHHHHHHHhcCCcc
Confidence 011 111 1223345666676665555554
No 233
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=41.27 E-value=33 Score=26.73 Aligned_cols=30 Identities=13% Similarity=0.327 Sum_probs=25.1
Q ss_pred ChHHHHHHHHHHhcCCCCCceeHHHHHHHHH
Q 007179 43 SFDSRLQTFFDMVDKDADGRITEDEVREIIS 73 (614)
Q Consensus 43 ~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~ 73 (614)
.+.|++...|+.. .++.++|+.+||++.+.
T Consensus 3 ~s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~ 32 (69)
T PF08726_consen 3 DSAEQVEEAFRAL-AGGKPYVTEEDLRRSLT 32 (69)
T ss_dssp STCHHHHHHHHHH-CTSSSCEEHHHHHHHS-
T ss_pred CCHHHHHHHHHHH-HcCCCcccHHHHHHHcC
Confidence 3467899999999 78889999999998873
No 234
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=41.16 E-value=27 Score=26.53 Aligned_cols=25 Identities=20% Similarity=-0.071 Sum_probs=21.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhh
Q 007179 243 DDNLNFHKVIAVGISIGVGIHAISH 267 (614)
Q Consensus 243 d~~~~~Hr~~g~~~~~~~~iH~~~~ 267 (614)
+.....|.+.|.+.++.+.+|...|
T Consensus 39 ~~~~~iH~~~g~~~~~l~~~Hl~lh 63 (64)
T PF14358_consen 39 HFWRNIHLWAGYLFLILIILHLGLH 63 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556799999999999999999765
No 235
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=41.09 E-value=32 Score=36.19 Aligned_cols=84 Identities=13% Similarity=0.125 Sum_probs=51.2
Q ss_pred CcccHHHHHHHHHHhcCCC----hHHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcC
Q 007179 25 DTITKDQLREFWDQISDQS----FDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELD 100 (614)
Q Consensus 25 G~I~~~ef~~~l~~~~~~~----~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D 100 (614)
...+..||..+..-.+... .-|.++.+-+.+|.|++|.|+.+|=..+++..+.-..-. + +=-+.+.
T Consensus 43 s~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~------~----kr~~~fH 112 (575)
T KOG4403|consen 43 SRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDST------R----KRSEKFH 112 (575)
T ss_pred chhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHHHhhcccch------h----hhhhhcc
Confidence 3566677755543222222 236789999999999999999999888887433211100 0 1011333
Q ss_pred CCCCCceeHHHHHHHHHhC
Q 007179 101 PDHLGCIMIDNLEMLLLQA 119 (614)
Q Consensus 101 ~d~~G~It~eef~~~l~~~ 119 (614)
. .|..||.+|+-....+.
T Consensus 113 ~-dD~~ItVedLWeaW~~S 130 (575)
T KOG4403|consen 113 G-DDKHITVEDLWEAWKES 130 (575)
T ss_pred C-CccceeHHHHHHHHHhh
Confidence 3 46678888887766543
No 236
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=39.18 E-value=51 Score=23.13 Aligned_cols=29 Identities=14% Similarity=0.378 Sum_probs=16.9
Q ss_pred HHHHHHHhc-CCC-CCceeHHHHHHHHHhhh
Q 007179 48 LQTFFDMVD-KDA-DGRITEDEVREIISLSA 76 (614)
Q Consensus 48 l~~~F~~~D-~d~-dG~I~~~E~~~~l~~~~ 76 (614)
+-.+|+.|- .|| +..++++||+.+++..+
T Consensus 8 iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~El 38 (44)
T PF01023_consen 8 IIDVFHKYAGKEGDKDTLSKKELKELLEKEL 38 (44)
T ss_dssp HHHHHHHHHTSSSSTTSEEHHHHHHHHHHHS
T ss_pred HHHHHHHHhccCCCCCeEcHHHHHHHHHHHH
Confidence 445666663 232 34677777777776433
No 237
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=38.66 E-value=53 Score=20.45 Aligned_cols=20 Identities=20% Similarity=0.139 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 007179 246 LNFHKVIAVGISIGVGIHAI 265 (614)
Q Consensus 246 ~~~Hr~~g~~~~~~~~iH~~ 265 (614)
..+|||++-++.++.++=++
T Consensus 2 ~~LH~w~~~i~al~~lv~~i 21 (27)
T PF03929_consen 2 NDLHKWFGDIFALFMLVFAI 21 (27)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 57999999988887766554
No 238
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=37.93 E-value=44 Score=40.32 Aligned_cols=56 Identities=11% Similarity=0.226 Sum_probs=44.7
Q ss_pred HHHHhcccCCCC-CcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCceeHHHHHHHHH
Q 007179 13 FDALTRRRNIQG-DTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 73 (614)
Q Consensus 13 f~~~D~~~~~~~-G~I~~~ef~~~l~~~~~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~ 73 (614)
|+.+| +|| |.|+..||.++|+...+ -++.+++++...-..|.+...+.+||..-..
T Consensus 4063 fkeyd----pdgkgiiskkdf~kame~~k~-ytqse~dfllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4063 FKEYD----PDGKGIISKKDFHKAMEGHKH-YTQSEIDFLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred chhcC----CCCCccccHHHHHHHHhcccc-chhHHHHHHHHhhccCccccccHHHHHHHhc
Confidence 45556 888 99999999999986432 3566788898888999999999999876553
No 239
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=37.81 E-value=33 Score=20.03 Aligned_cols=16 Identities=19% Similarity=0.489 Sum_probs=11.9
Q ss_pred cCCCCCceeHHHHHHH
Q 007179 56 DKDADGRITEDEVREI 71 (614)
Q Consensus 56 D~d~dG~I~~~E~~~~ 71 (614)
|.|+||.|+.-++..+
T Consensus 1 DvN~DG~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALL 16 (21)
T ss_dssp -TTSSSSSSHHHHHHH
T ss_pred CCCCCCcCCHHHHHHH
Confidence 7889999988877544
No 240
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=36.55 E-value=1e+02 Score=27.13 Aligned_cols=49 Identities=16% Similarity=0.229 Sum_probs=33.1
Q ss_pred CcccHHHHHHHHHHhc-------CC-C--h--------HHHHHHHHHHhcCCCCCceeHHHHHHHHH
Q 007179 25 DTITKDQLREFWDQIS-------DQ-S--F--------DSRLQTFFDMVDKDADGRITEDEVREIIS 73 (614)
Q Consensus 25 G~I~~~ef~~~l~~~~-------~~-~--~--------~~kl~~~F~~~D~d~dG~I~~~E~~~~l~ 73 (614)
..++..|...++..+- +. . + +--+.++..+||.+++|.|+.-+++..+.
T Consensus 58 ~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~KvaL~ 124 (127)
T PF09068_consen 58 SSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFKVALI 124 (127)
T ss_dssp SEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHHHHHH
Confidence 4699999999886542 11 1 1 12357889999999999999999887663
No 241
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.29 E-value=27 Score=36.14 Aligned_cols=67 Identities=19% Similarity=0.363 Sum_probs=45.8
Q ss_pred ChHHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHH
Q 007179 43 SFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLL 116 (614)
Q Consensus 43 ~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l 116 (614)
.+++.+++.|+.||..++|+|+-+-+..+|+... ...++ .+++..+=+.+|.+.-|-|-.++|....
T Consensus 306 ~~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N--~~vse-----~a~v~l~~~~l~pE~~~iil~~d~lg~~ 372 (449)
T KOG2871|consen 306 NPSEQLRRNFHAYDPEDNNFISCSGLQIVMTALN--RLVSE-----PAYVMLMRQPLDPESLGIILLEDFLGEF 372 (449)
T ss_pred CCCHHHHhhhhccCccCCCeeecHHHHHHHHHhc--ccccC-----HHHHHHhcCccChhhcceEEeccccccc
Confidence 4468899999999999999999998888886311 11221 1233344456788888877777665433
No 242
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=34.86 E-value=46 Score=36.89 Aligned_cols=61 Identities=15% Similarity=0.315 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHH-cCCCCCCceeHHHHHHHHH
Q 007179 46 SRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEE-LDPDHLGCIMIDNLEMLLL 117 (614)
Q Consensus 46 ~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~-~D~d~~G~It~eef~~~l~ 117 (614)
+.+..+|..||.|+||.++.+|+..+.+.+-. ...... .++. .-.+..|.+|++-|.....
T Consensus 315 ~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~-~pW~~~----------~~~~~t~~~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 315 RFLVDVFEKFDRDNDGALSPEELKDLFSTAPG-SPWTSS----------PYKDSTVKNERGWLTLNGFLSQWS 376 (625)
T ss_pred HHHHHHHHhccCCCCCCcCHHHHHHHhhhCCC-CCCCCC----------cccccceecccceeehhhHHHHHH
Confidence 45778899999999999999999999873222 111110 1111 1234789999998866543
No 243
>PLN02228 Phosphoinositide phospholipase C
Probab=33.99 E-value=1.1e+02 Score=34.23 Aligned_cols=68 Identities=15% Similarity=0.327 Sum_probs=45.4
Q ss_pred ChHHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcCCC----CCCceeHHHHHHHHHh
Q 007179 43 SFDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPD----HLGCIMIDNLEMLLLQ 118 (614)
Q Consensus 43 ~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D~d----~~G~It~eef~~~l~~ 118 (614)
.+.+++..+|+.|-.+ +.++.+||..++...-.+.. ...+.++++++.+... ..|.++.+.|...|..
T Consensus 21 ~~~~ei~~if~~~s~~--~~~t~~~~~~FL~~~Q~~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 21 EPPVSIKRLFEAYSRN--GKMSFDELLRFVSEVQGERH------AGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred CCcHHHHHHHHHhcCC--CccCHHHHHHHHHHhcCCcc------CCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 4667899999999643 58999999999963211111 1123455666665432 3467999999998864
No 244
>PF10897 DUF2713: Protein of unknown function (DUF2713); InterPro: IPR020404 This entry contains proteins with no known function. In some organisms this represents the C-terminal domain of a fusion protein with YjbL.
Probab=33.38 E-value=1.2e+02 Score=28.55 Aligned_cols=41 Identities=12% Similarity=0.173 Sum_probs=31.8
Q ss_pred CCcccHHHHHHHHHHhcCCC---h---------HHHHHHHHHHhcCCCCCcee
Q 007179 24 GDTITKDQLREFWDQISDQS---F---------DSRLQTFFDMVDKDADGRIT 64 (614)
Q Consensus 24 ~G~I~~~ef~~~l~~~~~~~---~---------~~kl~~~F~~~D~d~dG~I~ 64 (614)
+|+++|+.++.-|+...... + -+++-.+-+.||.|.+|.|-
T Consensus 175 ~geldFn~iL~~Mk~~~~Egk~d~~~iTKM~~Aa~kLI~F~qSfDPdSte~I~ 227 (246)
T PF10897_consen 175 KGELDFNDILDKMKLQVNEGKLDPDIITKMRDAAPKLIKFVQSFDPDSTEPIK 227 (246)
T ss_pred cCCCcHHHHHHHHHHhhccCCcCcHHHHHHHHhhHHHHHHHHhcCCCCcCcee
Confidence 69999999999998764332 1 25667778999999999875
No 245
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=32.44 E-value=1.3e+02 Score=21.01 Aligned_cols=32 Identities=13% Similarity=0.102 Sum_probs=20.5
Q ss_pred HHHHHHHHcCCCC-CCceeHHHHHHHHH-hCCcc
Q 007179 91 YAALIMEELDPDH-LGCIMIDNLEMLLL-QAPAQ 122 (614)
Q Consensus 91 ~~~~lf~~~D~d~-~G~It~eef~~~l~-~~~~~ 122 (614)
+++...+.+.+|+ +..++.+||+.+++ +.|..
T Consensus 8 iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~Elp~f 41 (44)
T PF01023_consen 8 IIDVFHKYAGKEGDKDTLSKKELKELLEKELPNF 41 (44)
T ss_dssp HHHHHHHHHTSSSSTTSEEHHHHHHHHHHHSTTT
T ss_pred HHHHHHHHhccCCCCCeEcHHHHHHHHHHHHHHH
Confidence 3334344455544 45799999999997 44544
No 246
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=32.30 E-value=68 Score=20.93 Aligned_cols=23 Identities=13% Similarity=0.081 Sum_probs=17.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHhh
Q 007179 245 NLNFHKVIAVGISIGVGIHAISH 267 (614)
Q Consensus 245 ~~~~Hr~~g~~~~~~~~iH~~~~ 267 (614)
...+|+|+|..+.+..++=++.-
T Consensus 5 ~~~~H~~~g~~~~~~ll~~~lTG 27 (34)
T PF13172_consen 5 WRKIHRWLGLIAAIFLLLLALTG 27 (34)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34799999999988877655443
No 247
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=31.71 E-value=1e+02 Score=26.12 Aligned_cols=57 Identities=19% Similarity=0.264 Sum_probs=34.3
Q ss_pred CceeHHHHHHHHHhhhc-cCc-ccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhCCccccc
Q 007179 61 GRITEDEVREIISLSAS-ANK-LSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQSVK 125 (614)
Q Consensus 61 G~I~~~E~~~~l~~~~~-~~~-~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~~~~~~~ 125 (614)
..++.+|+..+++..-. -.. +.... ..+++.+..+...+|-+|..++|.++|..+.+
T Consensus 31 ~p~s~~el~~~l~~~~~~~~~lin~~~--------~~~k~l~~~~~~~~s~~e~i~~l~~~p~LikR 89 (110)
T PF03960_consen 31 EPLSREELRELLSKLGNGPDDLINTRS--------KTYKELGKLKKDDLSDEELIELLLENPKLIKR 89 (110)
T ss_dssp S---HHHHHHHHHHHTSSGGGGB-TTS--------HHHHHTTHHHCTTSBHHHHHHHHHHSGGGB-S
T ss_pred CCCCHHHHHHHHHHhcccHHHHhcCcc--------chHhhhhhhhhhhhhhHHHHHHHHhChhheeC
Confidence 45889999999873210 011 11001 35777773345678999999999999999765
No 248
>PLN02223 phosphoinositide phospholipase C
Probab=31.49 E-value=1.3e+02 Score=33.32 Aligned_cols=75 Identities=17% Similarity=0.161 Sum_probs=49.3
Q ss_pred ChHHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhccC-cccchhHHHHHHHHHHHHHcC----CCCCCceeHHHHHHHHH
Q 007179 43 SFDSRLQTFFDMVDKDADGRITEDEVREIISLSASAN-KLSNIQKQAEEYAALIMEELD----PDHLGCIMIDNLEMLLL 117 (614)
Q Consensus 43 ~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~-~~~~~~~~~~~~~~~lf~~~D----~d~~G~It~eef~~~l~ 117 (614)
.+.+.++.+|..|- +++|..+.+.+.+++......+ +.....+.++++++.++.... ..+.+.++.+.|...|.
T Consensus 13 ~~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~ 91 (537)
T PLN02223 13 NQPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLF 91 (537)
T ss_pred CCcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhc
Confidence 35678999999994 6778999999999884211111 122224556666666665432 12346699999999885
Q ss_pred h
Q 007179 118 Q 118 (614)
Q Consensus 118 ~ 118 (614)
.
T Consensus 92 s 92 (537)
T PLN02223 92 S 92 (537)
T ss_pred C
Confidence 5
No 249
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=30.51 E-value=1.1e+02 Score=31.43 Aligned_cols=57 Identities=14% Similarity=0.260 Sum_probs=42.6
Q ss_pred HHHHHhcccCCCC-CcccHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCceeHHHHHHHHH
Q 007179 12 LFDALTRRRNIQG-DTITKDQLREFWDQISDQSFDSRLQTFFDMVDKDADGRITEDEVREIIS 73 (614)
Q Consensus 12 ~f~~~D~~~~~~~-G~I~~~ef~~~l~~~~~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~ 73 (614)
+...+| +.+ |+++.-..+.++.-++.+.-.+|++.+|.+.. |.+|.+..-.+..+++
T Consensus 115 lLaA~d----s~~~g~~~vfavkialatlc~gk~~dklryIfs~is-ds~gim~~i~~~~fl~ 172 (434)
T KOG4301|consen 115 LLAAED----SEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLH 172 (434)
T ss_pred HHhhcC----ccCCCCceeecchhhhhhhccchHHHHHHHHHHHHc-cchHHHHHHHHHHHHH
Confidence 345566 777 88888888888888888888899999999874 6677766655655665
No 250
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=30.30 E-value=59 Score=27.55 Aligned_cols=32 Identities=16% Similarity=0.204 Sum_probs=24.7
Q ss_pred HHHHHcCCCCCCceeHHHHHHHHHhCCccccc
Q 007179 94 LIMEELDPDHLGCIMIDNLEMLLLQAPAQSVK 125 (614)
Q Consensus 94 ~lf~~~D~d~~G~It~eef~~~l~~~~~~~~~ 125 (614)
..+++++.+....+|-+|..++|.++|..+++
T Consensus 59 ~~yk~l~l~~~~~~s~~e~~~~l~~~p~LikR 90 (105)
T cd03035 59 TTWRKLDDAQKAALDAAKAIALMLEHPSLIKR 90 (105)
T ss_pred hHHHhCChhhhccCCHHHHHHHHHhCcCeeec
Confidence 45666665533568999999999999999865
No 251
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=29.87 E-value=2.2e+02 Score=26.28 Aligned_cols=27 Identities=7% Similarity=-0.137 Sum_probs=22.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhhh
Q 007179 243 DDNLNFHKVIAVGISIGVGIHAISHLA 269 (614)
Q Consensus 243 d~~~~~Hr~~g~~~~~~~~iH~~~~~~ 269 (614)
.....+|+++|.+.++..+++.+..+.
T Consensus 44 ~~~~~~H~~~G~~~~~~~~~~~~~~~~ 70 (188)
T PF00033_consen 44 QLLRWLHFSLGIVFLALFLLRILWRLF 70 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445579999999999999999887663
No 252
>PRK10026 arsenate reductase; Provisional
Probab=29.54 E-value=1.4e+02 Score=26.98 Aligned_cols=58 Identities=22% Similarity=0.117 Sum_probs=36.8
Q ss_pred CceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhCCccccc
Q 007179 61 GRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQSVK 125 (614)
Q Consensus 61 G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~~~~~~~ 125 (614)
..+|.+|++.+++. .+.+ .+..-.--...+++++.+.+ .+|.+|..++|.++|..+++
T Consensus 37 ~ppt~~eL~~~l~~----~g~~--~~~lint~~~~yr~L~~~~~-~ls~~e~l~ll~~~P~LIKR 94 (141)
T PRK10026 37 TPPTRDELVKLIAD----MGIS--VRALLRKNVEPYEELGLAED-KFTDDQLIDFMLQHPILINR 94 (141)
T ss_pred CCcCHHHHHHHHHh----CCCC--HHHHHHcCCchHHHcCCCcc-CCCHHHHHHHHHhCccceeC
Confidence 45788888888862 1111 01111111245777766554 57999999999999999875
No 253
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=28.69 E-value=2.1e+02 Score=30.41 Aligned_cols=59 Identities=14% Similarity=0.160 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcccCCCC-CcccHHHHHHHHHH-hcCCChHHHHHHHHHHhcCCCCCceeHHHHHHHHHh
Q 007179 8 FAVELFDALTRRRNIQG-DTITKDQLREFWDQ-ISDQSFDSRLQTFFDMVDKDADGRITEDEVREIISL 74 (614)
Q Consensus 8 ~~~~~f~~~D~~~~~~~-G~I~~~ef~~~l~~-~~~~~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~ 74 (614)
-++.+-+.+| .|. |.|+.+|=-..|+. +...+.++|=...|.- .|..|+.+|+-+..+.
T Consensus 69 Air~iHrqmD----DD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH~----dD~~ItVedLWeaW~~ 129 (575)
T KOG4403|consen 69 AIRDIHRQMD----DDHNGSIDVEESDEFLREDMKYRDSTRKRSEKFHG----DDKHITVEDLWEAWKE 129 (575)
T ss_pred HHHHHHHhcc----cccCCCcccccchHHHHHHhhcccchhhhhhhccC----CccceeHHHHHHHHHh
Confidence 3567777788 777 99999887776653 5555556665555652 4568999999888873
No 254
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=28.66 E-value=59 Score=27.79 Aligned_cols=58 Identities=14% Similarity=0.083 Sum_probs=35.2
Q ss_pred ceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcCCCCC-CceeHHHHHHHHHhCCccccc
Q 007179 62 RITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHL-GCIMIDNLEMLLLQAPAQSVK 125 (614)
Q Consensus 62 ~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D~d~~-G~It~eef~~~l~~~~~~~~~ 125 (614)
..+.+|+..+++.. +.+ .++ .-.--...+++.+.+.+ ..++-+|..++|.++|..+++
T Consensus 35 ~~~~~el~~~~~~~----~~~-~~~-l~~~~~~~~~~l~~~~~~~~~s~~e~~~~l~~~p~LikR 93 (111)
T cd03036 35 PPSKEELKKWLEKS----GLP-LKK-FFNTSGKSYRELGLKDKLPSLSEEEALELLSSDGMLIKR 93 (111)
T ss_pred cccHHHHHHHHHHc----CCC-HHH-HHhcCCchHHhCCcccccccCCHHHHHHHHHhCcCeeeC
Confidence 66788888888621 111 000 00111135677665533 346889999999999999865
No 255
>PLN02222 phosphoinositide phospholipase C 2
Probab=28.12 E-value=1.4e+02 Score=33.53 Aligned_cols=67 Identities=18% Similarity=0.252 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcCC-CCCCceeHHHHHHHHHh
Q 007179 44 FDSRLQTFFDMVDKDADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDP-DHLGCIMIDNLEMLLLQ 118 (614)
Q Consensus 44 ~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D~-d~~G~It~eef~~~l~~ 118 (614)
+.++++.+|..|-. ++.++.++|..+|...-.+... .++.++++++.+.. .+++.++++.|...|..
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~------~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKA------TREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccC------CHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 44589999999853 4699999999999632211111 23344455554421 24567999999998865
No 256
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=27.19 E-value=1.2e+02 Score=25.88 Aligned_cols=27 Identities=19% Similarity=0.378 Sum_probs=20.4
Q ss_pred cccchhHHHHHHHHHH-HHHHHHHhhhh
Q 007179 342 TGFNAFWYSHHLFVIV-YTLLIVHGQYL 368 (614)
Q Consensus 342 ~~ye~F~~~H~l~~~~-~v~~~~H~~~~ 368 (614)
..++.....|..++.+ +++..+|....
T Consensus 28 ~~~~~~~~~Hr~lg~~~~~~~~~H~~~~ 55 (125)
T PF01794_consen 28 ISFDRLLRFHRWLGRLAFFLALLHGVLY 55 (125)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999998864 45568898643
No 257
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=27.02 E-value=57 Score=28.95 Aligned_cols=58 Identities=16% Similarity=0.202 Sum_probs=36.9
Q ss_pred CceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhCCccccc
Q 007179 61 GRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQSVK 125 (614)
Q Consensus 61 G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~~~~~~~ 125 (614)
..++.+|+..+++..- .+.. +.. .--...+++.+.+. ..+|-+|..++|.++|..+++
T Consensus 35 ~~~s~~eL~~~l~~~~--~~~~---~li-n~~~~~~k~L~~~~-~~ls~~e~i~ll~~~P~LikR 92 (132)
T PRK13344 35 EPLTKEEILAILTKTE--NGIE---SIV-SSKNRYAKALDCDI-EELSVNEVIDLIQENPRILKS 92 (132)
T ss_pred CCCCHHHHHHHHHHhC--CCHH---Hhh-ccCcHHHHhCCcch-hcCCHHHHHHHHHhCccceeC
Confidence 4678889988886311 0011 000 01124577777543 568999999999999999764
No 258
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=25.99 E-value=4.4e+02 Score=24.13 Aligned_cols=22 Identities=9% Similarity=0.037 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh
Q 007179 246 LNFHKVIAVGISIGVGIHAISH 267 (614)
Q Consensus 246 ~~~Hr~~g~~~~~~~~iH~~~~ 267 (614)
..+|.++|.+++...+++.+-.
T Consensus 43 ~~~H~~~G~~~~~~~~~~l~~~ 64 (182)
T PF01292_consen 43 RNWHVIAGLLLFALLIFRLLWR 64 (182)
T ss_pred HhHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999988887655
No 259
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=25.85 E-value=1.6e+02 Score=28.51 Aligned_cols=41 Identities=10% Similarity=0.114 Sum_probs=26.6
Q ss_pred eeEEEEEEEEecC-----CEEEEEEeCCC-CcccCCCCEEEEEeCCC
Q 007179 404 KAVSIQKVAVYPG-----NVLALHMSKPD-RFRYKSGQYMFVNCAAV 444 (614)
Q Consensus 404 ~~~~v~~~~~~~~-----~v~~l~l~~~~-~~~~~pGQ~v~l~~p~~ 444 (614)
..++|.+.+.+++ ++.+++|+.+. ++.|+||+++-|..+..
T Consensus 9 ~~a~V~~~~~Lt~~~~~r~~~hieldl~~~~l~Y~pGD~l~V~P~N~ 55 (219)
T PF00667_consen 9 FPATVLENRRLTSPGSDRSTRHIELDLSDSGLSYQPGDHLGVYPPND 55 (219)
T ss_dssp EEEEEEEEEE-SSTTSSSEEEEEEEE-TTSTG---TT-EEEEE-SSE
T ss_pred EEEEEEeEEEcCCCCCCceEEEEEEEeCCCCCcccCCCEEEEEccCC
Confidence 4577888887765 48999998764 79999999999987653
No 260
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=25.49 E-value=70 Score=28.68 Aligned_cols=51 Identities=14% Similarity=0.156 Sum_probs=26.6
Q ss_pred CCCceeHHHHHHHHHhh-hccCcccchhHHHHHHHHHHHHHcC-------CCCCCceeHHHHHHHHHhCC
Q 007179 59 ADGRITEDEVREIISLS-ASANKLSNIQKQAEEYAALIMEELD-------PDHLGCIMIDNLEMLLLQAP 120 (614)
Q Consensus 59 ~dG~I~~~E~~~~l~~~-~~~~~~~~~~~~~~~~~~~lf~~~D-------~d~~G~It~eef~~~l~~~~ 120 (614)
.=+.|+.+||.++-+-. -+..++ . .+++++. -+.++.|+||.|+..|+.+=
T Consensus 4 ~~~~lsp~eF~qLq~y~eys~kkl-------k----dvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yL 62 (138)
T PF14513_consen 4 EWVSLSPEEFAQLQKYSEYSTKKL-------K----DVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYL 62 (138)
T ss_dssp --S-S-HHHHHHHHHHHHH----H-------H----HHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHT
T ss_pred ceeccCHHHHHHHHHHHHHHHHHH-------H----HHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHH
Confidence 34678999998876521 111111 2 2333332 24566899999999998653
No 261
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=25.08 E-value=2e+02 Score=25.28 Aligned_cols=56 Identities=13% Similarity=0.041 Sum_probs=34.9
Q ss_pred CceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhCCccccc
Q 007179 61 GRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQSVK 125 (614)
Q Consensus 61 G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~~~~~~~ 125 (614)
.-++.+|++.+++. .+ .++.. .--...+++.+.+. ..++-+|..++|.++|..+++
T Consensus 36 ~p~t~~eL~~~l~~------~g-~~~li-n~~~~~~r~l~~~~-~~ls~~e~i~lm~~~P~LIKR 91 (126)
T TIGR01616 36 EPWHADTLRPYFGN------KP-VGSWF-NRAAPRVKSGEVNP-DSIDEASALALMVSDPLLIRR 91 (126)
T ss_pred CCcCHHHHHHHHHH------cC-HHHHH-hccchHhhhCCCCc-ccCCHHHHHHHHHhCcCeEeC
Confidence 35778888888762 11 01000 00113566666443 568899999999999999875
No 262
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=25.02 E-value=2.3e+02 Score=24.12 Aligned_cols=58 Identities=14% Similarity=0.028 Sum_probs=35.0
Q ss_pred CceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhCCccccc
Q 007179 61 GRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQSVK 125 (614)
Q Consensus 61 G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~~~~~~~ 125 (614)
..++.+|+..+++.. +.+.. +. -.--...+++.+.+. ..+|-+|..++|.++|..+++
T Consensus 34 ~~~t~~el~~~l~~~--~~~~~---~l-in~~~~~y~~l~~~~-~~ls~~e~i~ll~~~P~LikR 91 (112)
T cd03034 34 TPPTAAELRELLAKL--GISPR---DL-LRTKEAPYKELGLAD-PELSDEELIDAMAAHPILIER 91 (112)
T ss_pred CCcCHHHHHHHHHHc--CCCHH---HH-HhcCCchHHHcCCCc-cCCCHHHHHHHHHhCcCcccC
Confidence 457788888887621 01111 00 000112456665544 468999999999999999865
No 263
>PLN02230 phosphoinositide phospholipase C 4
Probab=25.01 E-value=2.3e+02 Score=32.02 Aligned_cols=73 Identities=8% Similarity=0.218 Sum_probs=45.0
Q ss_pred ChHHHHHHHHHHhcCCCCCceeHHHHHHHHHhhhccC-cccchhHHHHHHHHHHHHHc---CCCCCCceeHHHHHHHHHh
Q 007179 43 SFDSRLQTFFDMVDKDADGRITEDEVREIISLSASAN-KLSNIQKQAEEYAALIMEEL---DPDHLGCIMIDNLEMLLLQ 118 (614)
Q Consensus 43 ~~~~kl~~~F~~~D~d~dG~I~~~E~~~~l~~~~~~~-~~~~~~~~~~~~~~~lf~~~---D~d~~G~It~eef~~~l~~ 118 (614)
.+..+++.+|..|-.++ +.++.++|..++...-... ..+ .+.+++.++++.+.. ..-+.+.++.+.|...|..
T Consensus 26 ~p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 26 GPVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETS--LEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CCcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCC--HHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 35578999999995444 7999999999997322111 111 233344444433322 2223456999999998755
No 264
>PRK12559 transcriptional regulator Spx; Provisional
Probab=24.79 E-value=1.9e+02 Score=25.50 Aligned_cols=58 Identities=14% Similarity=0.271 Sum_probs=36.9
Q ss_pred CceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhCCccccc
Q 007179 61 GRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQSVK 125 (614)
Q Consensus 61 G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~~~~~~~ 125 (614)
..++.+|++.+++.. +.+ -+..-.--...+++.+.+. ..+|-+|..++|.++|..+++
T Consensus 35 ~~~s~~el~~~l~~~----~~g--~~~lin~~~~~~k~l~~~~-~~ls~~e~i~ll~~~P~LikR 92 (131)
T PRK12559 35 NSMTVDELKSILRLT----EEG--ATEIISTRSKTFQDLNINI-EELSLNEFYKLIIEHPLMLRR 92 (131)
T ss_pred CcCCHHHHHHHHHHc----CCC--HHHHHhcCcHHHHhCCCCc-ccCCHHHHHHHHHhCcceEeC
Confidence 467888888888631 011 0011111124577777655 357899999999999999764
No 265
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.41 E-value=1.3e+02 Score=26.15 Aligned_cols=44 Identities=23% Similarity=0.325 Sum_probs=33.2
Q ss_pred CCCceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcCCCCCCce
Q 007179 59 ADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCI 107 (614)
Q Consensus 59 ~dG~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D~d~~G~I 107 (614)
..|.|+.+|-.++|.. ..+...++++...+++|+.-|+.+.|+.
T Consensus 52 ~~~~iTlqEa~qILnV-----~~~ln~eei~k~yehLFevNdkskGGSF 95 (132)
T KOG3442|consen 52 SNGKITLQEAQQILNV-----KEPLNREEIEKRYEHLFEVNDKSKGGSF 95 (132)
T ss_pred ccccccHHHHhhHhCC-----CCCCCHHHHHHHHHHHHhccCcccCcce
Confidence 3578999999999852 1122366788889999999999888864
No 266
>PLN02952 phosphoinositide phospholipase C
Probab=23.01 E-value=1.5e+02 Score=33.41 Aligned_cols=55 Identities=9% Similarity=0.034 Sum_probs=37.9
Q ss_pred CCCceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhCC
Q 007179 59 ADGRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAP 120 (614)
Q Consensus 59 ~dG~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~~ 120 (614)
+.|.++++||..+.+.... .. .....+++.+|+++-.+ ++.+|.++|...|.+.-
T Consensus 13 ~~g~l~f~~f~~f~~~~k~-~~-----~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q 67 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKI-TE-----AEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQ 67 (599)
T ss_pred cCCCcCHHHHHHHHHHhcc-cc-----CCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhC
Confidence 4689999999877763111 11 11245677889888654 36899999999997643
No 267
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=22.78 E-value=2.7e+02 Score=23.75 Aligned_cols=58 Identities=21% Similarity=0.317 Sum_probs=35.2
Q ss_pred CceeHHHHHHHHHhhhccCcccchhHHHHHHHHHHHHHcCCCCCCceeHHHHHHHHHhCCccccc
Q 007179 61 GRITEDEVREIISLSASANKLSNIQKQAEEYAALIMEELDPDHLGCIMIDNLEMLLLQAPAQSVK 125 (614)
Q Consensus 61 G~I~~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~lf~~~D~d~~G~It~eef~~~l~~~~~~~~~ 125 (614)
...+.+|++.+++..- .+.. ..-.--...+++.+.+. ..+|-+|..++|.++|..+++
T Consensus 35 ~~~~~~el~~~~~~~~--~~~~----~l~n~~~~~~k~l~~~~-~~ls~~e~i~~l~~~p~LikR 92 (115)
T cd03032 35 QPLTKEELKEILSLTE--NGVE----DIISTRSKAFKNLNIDI-DELSLSELIRLISEHPSLLRR 92 (115)
T ss_pred CcchHHHHHHHHHHhc--CCHH----HHHhcCcHHHHHcCCCc-ccCCHHHHHHHHHhChhheeC
Confidence 4567788888876210 0110 00011114567766554 557999999999999998764
No 268
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=22.54 E-value=63 Score=31.37 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=15.7
Q ss_pred CccccceeccCCC--CCcEEEEEEecC
Q 007179 447 FEWHPFSITSAPD--DDYLSVHIRTLG 471 (614)
Q Consensus 447 ~~~hpfTias~p~--~~~l~l~ir~~g 471 (614)
.+.|.|||||+|. .+.++++|....
T Consensus 177 l~PR~YSIsSS~~~~p~~v~ltv~vv~ 203 (219)
T PF00667_consen 177 LQPRYYSISSSPLVHPNKVHLTVSVVE 203 (219)
T ss_dssp ---EEEEB-S-TTTSTTEEEEEEEE-E
T ss_pred CCCcceeecccccCCCCEEEEEEEEEE
Confidence 4789999999984 678888888763
No 269
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=21.30 E-value=79 Score=33.21 Aligned_cols=25 Identities=20% Similarity=0.450 Sum_probs=22.0
Q ss_pred CeEEEEEeCcC--HHHHHHHHHHHHHh
Q 007179 526 EVVLLVGLGIG--ATPMISIVKDIVNN 550 (614)
Q Consensus 526 ~~vvlIagG~G--Itp~~s~l~~l~~~ 550 (614)
+++++.||||| |.|.+++++++.++
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~~ 28 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKED 28 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHhC
Confidence 46899999999 89999999999763
No 270
>PLN02228 Phosphoinositide phospholipase C
Probab=21.20 E-value=2.8e+02 Score=31.22 Aligned_cols=61 Identities=16% Similarity=0.239 Sum_probs=46.3
Q ss_pred HHHHHHHHHhcccCCCCCcccHHHHHHHHHHhcCC--ChHHHHHHHHHHhcCC----CCCceeHHHHHHHHH
Q 007179 8 FAVELFDALTRRRNIQGDTITKDQLREFWDQISDQ--SFDSRLQTFFDMVDKD----ADGRITEDEVREIIS 73 (614)
Q Consensus 8 ~~~~~f~~~D~~~~~~~G~I~~~ef~~~l~~~~~~--~~~~kl~~~F~~~D~d----~dG~I~~~E~~~~l~ 73 (614)
.++++|..+. .+ +.++.++|...|...+.. ...+.+..+|+.|... ..|.++.++|..+|.
T Consensus 25 ei~~if~~~s----~~-~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~ 91 (567)
T PLN02228 25 SIKRLFEAYS----RN-GKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLF 91 (567)
T ss_pred HHHHHHHHhc----CC-CccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhc
Confidence 3688898876 32 689999999999776543 3467788899988643 346799999999885
Done!