BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007181
(614 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F99|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
pdb|4F9A|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
pdb|4F9A|C Chain C, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
pdb|4F9B|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Pha767491
pdb|4F9B|C Chain C, Human Cdc7 Kinase In Complex With Dbf4 And Pha767491
pdb|4F9C|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Xl413
Length = 361
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 418 QETRNYVGKKLLELTLMELFVFRFMQTDPNWSNFLYDEATKTINLIDFGAARAYPKSFVD 477
QE R Y+ L L + F + D SNFLY+ K L+DFG A+ + +
Sbjct: 117 QEVREYMLN--LFKALKRIHQFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQGTHDTKI- 173
Query: 478 EYLRMVVACANGDRES----AIEMSRR 500
E L+ V + A +R S +I +SRR
Sbjct: 174 ELLKFVQSEAQQERCSQNKCSICLSRR 200
>pdb|3SSM|A Chain A, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg And Sah, Crystal Form 1
pdb|3SSM|B Chain B, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg And Sah, Crystal Form 1
pdb|3SSM|C Chain C, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg And Sah, Crystal Form 1
pdb|3SSM|D Chain D, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg And Sah, Crystal Form 1
pdb|3SSN|A Chain A, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg, Sah, And Mycinamycin Vi
pdb|3SSN|B Chain B, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg, Sah, And Mycinamycin Vi
pdb|3SSN|C Chain C, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg, Sah, And Mycinamycin Vi
pdb|3SSN|D Chain D, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg, Sah, And Mycinamycin Vi
pdb|3SSO|A Chain A, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg And Sah, Crystal Form 2
pdb|3SSO|B Chain B, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg And Sah, Crystal Form 2
pdb|3SSO|C Chain C, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg And Sah, Crystal Form 2
pdb|3SSO|D Chain D, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg And Sah, Crystal Form 2
pdb|3SSO|E Chain E, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg And Sah, Crystal Form 2
pdb|3SSO|F Chain F, Myce Methyltransferase From The Mycinamycin Biosynthetic
Pathway In Complex With Mg And Sah, Crystal Form 2
Length = 419
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 9/86 (10%)
Query: 448 WSNFLYDEATKTINLIDFGAARAYPKSFVDEYLRMVVACANGDRESAIEMSRRLG-FLTG 506
W +F ++++D KS VDE + D E ++RR G F
Sbjct: 241 WKSFFPRGQIYGLDIMD--------KSHVDELRIRTIQGDQNDAEFLDRIARRYGPFDIV 292
Query: 507 MENVIMLDAHVQAAFIVGMPFAKPGG 532
+++ ++AHV+ +F P +PGG
Sbjct: 293 IDDGSHINAHVRTSFAALFPHVRPGG 318
>pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB0|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
Length = 420
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Query: 10 LINGLSLVAKEITKRSQALQTARTGDVETLISSSLKK-ALVSATEISGLTRGTVREFTNP 68
+IN ++ TKR Q +Q + D + I S ++ L+ E+ +G R+F
Sbjct: 316 IINTPEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIGAELKPKYKGRARDFLYA 375
Query: 69 KPKESIVYFNDSSDVAQSAPS-----TDKDGAVDQFAASVRDV 106
+ ++ N +DV + APS D + +FA +V V
Sbjct: 376 GAEAGVMVLNAGADVMRFAPSLVVEEADIHEGMQRFAQAVGKV 418
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,074,361
Number of Sequences: 62578
Number of extensions: 610134
Number of successful extensions: 1432
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1430
Number of HSP's gapped (non-prelim): 5
length of query: 614
length of database: 14,973,337
effective HSP length: 105
effective length of query: 509
effective length of database: 8,402,647
effective search space: 4276947323
effective search space used: 4276947323
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)