BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007182
(614 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BO1|A Chain A, Phosphatidylinositol Phosphate Kinase Type Ii Beta
pdb|1BO1|B Chain B, Phosphatidylinositol Phosphate Kinase Type Ii Beta
Length = 416
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 100/186 (53%), Gaps = 10/186 (5%)
Query: 415 LKPSDFDPKEKYWTRFAPEGSKITPPHQSVEFRWKDYCPMVFRHLRELFQVDPANYMLAI 474
L P DF K +++ + + F++K+YCPMVFR+LRE F +D +Y ++
Sbjct: 66 LMPDDF----KAYSKIKVDNHLFNKENLPSRFKFKEYCPMVFRNLRERFGIDDQDYQNSV 121
Query: 475 CGDDALRELSSPGKSGSFFYVTQDDRFMIKTVKKSEVKVLLRMLPSYYQHVCR-YENSLV 533
+ S G+ G+ F T D RF+IKTV +V + +L Y+Q + + N+L+
Sbjct: 122 TRSAPINS-DSQGRCGTRFLTTYDRRFVIKTVSSEDVAEMHNILKKYHQFIVECHGNTLL 180
Query: 534 TKFYGVHCVKPIGGQKTRFIVMGNLFCSDYRIHRRFDLKGSSHGR-TTDKPVEEIDETTT 592
+F G++ + + G +T +V N+F +HR++DLKGS+ R +DK E+ + T
Sbjct: 181 PQFLGMYRLT-VDGVETYMVVTRNVFSHRLTVHRKYDLKGSTVAREASDK--EKAKDLPT 237
Query: 593 LKDLDL 598
KD D
Sbjct: 238 FKDNDF 243
>pdb|2YBX|A Chain A, Crystal Structure Of Human
Phosphatidylinositol-5-Phosphate 4-Kinase Type-2 Alpha
pdb|2YBX|B Chain B, Crystal Structure Of Human
Phosphatidylinositol-5-Phosphate 4-Kinase Type-2 Alpha
Length = 394
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 112/210 (53%), Gaps = 12/210 (5%)
Query: 393 LMLNLQLGIRYSVGK--HASILRDLKPSDFDPKEKYWTRFAPEGSKITPPHQSVEFRWKD 450
L+ L G+ +S+ + H I L P DF K +++ + + F++K+
Sbjct: 26 LLSVLMWGVNHSINELSHVQIPVMLMPDDF----KAYSKIKVDNHLFNKENMPSHFKFKE 81
Query: 451 YCPMVFRHLRELFQVDPANYMLAICGDDALRELSSPGKSGSFFYVTQDDRFMIKTVKKSE 510
YCPMVFR+LRE F +D ++ ++ L S +SG+ F+ + D R++IKT+ +
Sbjct: 82 YCPMVFRNLRERFGIDDQDFQNSLTRSAPLPN-DSQARSGARFHTSYDKRYIIKTITSED 140
Query: 511 VKVLLRMLPSYYQHVCR-YENSLVTKFYGVHCVKPIGGQKTRFIVMGNLFCSDYRIHRRF 569
V + +L Y+Q++ + +L+ +F G++ + + G + IV N+F ++R++
Sbjct: 141 VAEMHNILKKYHQYIVECHGITLLPQFLGMYRLN-VDGVEIYVIVTRNVFSHRLSVYRKY 199
Query: 570 DLKGSSHGR-TTDKPVEEIDETTTLKDLDL 598
DLKGS+ R +DK E+ E TLKD D
Sbjct: 200 DLKGSTVAREASDK--EKAKELPTLKDNDF 227
>pdb|2GK9|A Chain A, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
pdb|2GK9|B Chain B, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
pdb|2GK9|C Chain C, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
pdb|2GK9|D Chain D, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
Length = 392
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 99/186 (53%), Gaps = 13/186 (6%)
Query: 415 LKPSDFDPKEKYWTRFAPEGSKITPPHQSVEFRWKDYCPMVFRHLRELFQVDPANYMLAI 474
L P DF K + P H F++K+YCP VFR+LR+ F +D +Y++++
Sbjct: 42 LLPDDFKASSKIKVNNHLFHRENLPSH----FKFKEYCPQVFRNLRDRFGIDDQDYLVSL 97
Query: 475 CGDDALRELSSPGKSGSFFYVTQDDRFMIKTVKKSEVKVLLRMLPSYYQHVCR-YENSLV 533
+ S G+ F ++ D +IK V ++ + L +Y+Q++ + + N+L+
Sbjct: 98 TRNPPSESEGSDGR----FLISYDRTLVIKEVSSEDIADMHSNLSNYHQYIVKCHGNTLL 153
Query: 534 TKFYGVHCVKPIGGQKTRFIVMGNLFCSDYRIHRRFDLKGSSHGR-TTDKPVEEIDETTT 592
+F G++ V + + + +VM N+F +HR++DLKGS R +DK E++ E T
Sbjct: 154 PQFLGMYRVS-VDNEDSYMLVMRNMFSHRLPVHRKYDLKGSLVSREASDK--EKVKELPT 210
Query: 593 LKDLDL 598
L+D+D
Sbjct: 211 LRDMDF 216
>pdb|1H3I|A Chain A, Crystal Structure Of The Histone Methyltransferase Set79
pdb|1H3I|B Chain B, Crystal Structure Of The Histone Methyltransferase Set79
Length = 293
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 192 YANGDVYEGCWKKNLQDGQGRYVWKNGNEYVGEWKNGVISGRGTLIWANGNK-YEGQWEN 250
+ +G EG + + GQG Y +++G G + +G ++G +G ++GQ+++
Sbjct: 2 FFDGSTLEGYYVDDALQGQGVYTYEDGGVLQGTYVDGELNGPAQEYDTDGRLIFKGQYKD 61
Query: 251 GTPKGSGVFTWPDGSCYIGTWN 272
G +PDG +G N
Sbjct: 62 NIRHGVCWIYYPDGGSLVGEVN 83
>pdb|1MT6|A Chain A, Structure Of Histone H3 K4-Specific Methyltransferase
Set79 WITH ADOHCY
Length = 280
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 199 EGCWKKNLQDGQGRYVWKNGNEYVGEWKNGVISGRGTLIWANGNK-YEGQWENGTPKGSG 257
EG + + GQG Y +++G G + +G ++G +G ++GQ+++ G
Sbjct: 3 EGYYVDDALQGQGVYTYEDGGVLQGTYVDGELNGPAQEYDTDGRLIFKGQYKDNIRHGVC 62
Query: 258 VFTWPDGSCYIGTWN 272
+PDG +G N
Sbjct: 63 WIYYPDGGSLVGEVN 77
>pdb|4D94|A Chain A, Crystal Structure Of Tep1r
Length = 1325
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 102 NGDLYIGSFVGNAPHGSGKYLW-TDGCMYEG--EWRRGKASGKGKFSWPSGATYEGEFKS 158
NG +++ +FVG + + KY+ D M E +W K G+F +GA Y E +
Sbjct: 898 NGSVFLTAFVGTSMQTAVKYISDIDAAMVEKALDWLASKQHFSGRFD-KAGAEYHKEMQG 956
Query: 159 G 159
G
Sbjct: 957 G 957
>pdb|2PN5|A Chain A, Crystal Structure Of Tep1r
Length = 1325
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 102 NGDLYIGSFVGNAPHGSGKYLW-TDGCMYEG--EWRRGKASGKGKFSWPSGATYEGEFKS 158
NG +++ +FVG + + KY+ D M E +W K G+F +GA Y E +
Sbjct: 898 NGSVFLTAFVGTSMQTAVKYISDIDAAMVEKALDWLASKQHFSGRFD-KAGAEYHKEMQG 956
Query: 159 G 159
G
Sbjct: 957 G 957
>pdb|1N6C|A Chain A, Structure Of Set79
Length = 297
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 209 GQGRYVWKNGNEYVGEWKNGVISGRGTLIWANGNK-YEGQWENGTPKGSGVFTWPDGSCY 267
GQG Y +++G G + +G ++G +G ++GQ+++ G +PDG
Sbjct: 1 GQGVYTYEDGGVLQGTYVDGELNGPAQEYDTDGRLIFKGQYKDNIRHGVCWIYYPDGGSL 60
Query: 268 IGTWN 272
+G N
Sbjct: 61 VGEVN 65
>pdb|2O7I|A Chain A, The X-Ray Crystal Structure Of A Thermophilic Cellobiose
Binding Protein Bound With Cellobiose
pdb|3I5O|A Chain A, The X-Ray Crystal Structure Of A Thermophilic Cellobiose
Binding Protein Bound With Cellopentaose
pdb|3I5O|B Chain B, The X-Ray Crystal Structure Of A Thermophilic Cellobiose
Binding Protein Bound With Cellopentaose
Length = 592
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 428 TRFAPEGSKITPPHQSVEFRWKDY---CPMVFRHLREL 462
R P+G+K+ P SV + W D+ C M+ ++LR +
Sbjct: 363 VRVGPDGTKLGPYTISVPYGWTDWMMMCEMIAKNLRSI 400
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,554,260
Number of Sequences: 62578
Number of extensions: 968543
Number of successful extensions: 1843
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1835
Number of HSP's gapped (non-prelim): 18
length of query: 614
length of database: 14,973,337
effective HSP length: 105
effective length of query: 509
effective length of database: 8,402,647
effective search space: 4276947323
effective search space used: 4276947323
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)