BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007183
(614 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From
Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion
Channel
Length = 137
Score = 104 bits (259), Expect = 2e-22, Method: Composition-based stats.
Identities = 53/131 (40%), Positives = 82/131 (62%), Gaps = 13/131 (9%)
Query: 441 LKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERT 500
++ V F+ +DE +LDA+C+ +KP + + +++V EGDP+ EMLFI++G++ T+
Sbjct: 8 VRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGR 67
Query: 501 NGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEA 560
+G N S L +GDF G+EL+ W L +S SN+P STR+V+AL VEA
Sbjct: 68 SGFYNRSL-------------LKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEA 114
Query: 561 FGLMAHDLKHV 571
F L+A +LK V
Sbjct: 115 FALIADELKFV 125
>pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKT|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKV|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
Length = 212
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Query: 380 RMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKRELCLD 439
R +++ + + + +L +++ Q++ + W + IDV L P ELR +I L +
Sbjct: 17 RTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKE 76
Query: 440 LLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWI 493
LL+ + F++ L +L +K +F ++ +GD + + F+ G M +
Sbjct: 77 LLQ-LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEV 129
>pdb|3SHR|A Chain A, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
pdb|3SHR|B Chain B, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
Length = 299
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 60/140 (42%), Gaps = 22/140 (15%)
Query: 432 IKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKM 491
IK ++ LK+V F++L EE+L L D ++ Y +I+ +G +G
Sbjct: 150 IKHTEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQG---------ARGDT 200
Query: 492 WIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRS 551
+ SK + N + S + D F+ L GD++GE ++L + T +
Sbjct: 201 FFIISKGKVNVTREDSPNED-PVFLR---TLGKGDWFGE---------KALQGEDVRTAN 247
Query: 552 VQALKNVEAFGLMAHDLKHV 571
V A + V + KH+
Sbjct: 248 VIAAEAVTCLVIDRDSFKHL 267
>pdb|3MN8|A Chain A, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|B Chain B, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|C Chain C, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|D Chain D, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
Length = 435
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 87 IPVVNDNKKCIRLDYKLAVTATGLRSLFDFLYIFY 121
+ V NDN++ +RLD+KLA T + F +Y
Sbjct: 400 VRVTNDNQEALRLDFKLAPVETNFDGISSFYSPYY 434
>pdb|3TNP|B Chain B, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
pdb|3TNP|E Chain E, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 416
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 416 DVESSLSILPK-ELRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIV 474
D ES + I PK + +RN +E C D+L FK LD E + + D + + H++
Sbjct: 126 DAESRI-IHPKTDDQRNRLQEACKDILL----FKNLDPEQMSQVLDAMFEKLVKEGEHVI 180
Query: 475 LEGDPIYEMLFIVQGKMWIY 494
+GD I +G IY
Sbjct: 181 DQGDDGDNFYVIDRGTFDIY 200
>pdb|3TNQ|A Chain A, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 416
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 416 DVESSLSILPK-ELRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIV 474
D ES + I PK + +RN +E C D+L FK LD E + + D + + H++
Sbjct: 126 DAESRI-IHPKTDDQRNRLQEACKDILL----FKNLDPEQMSQVLDAMFEKLVKEGEHVI 180
Query: 475 LEGDPIYEMLFIVQGKMWIY 494
+GD I +G IY
Sbjct: 181 DQGDDGDNFYVIDRGTFDIY 200
>pdb|1CX4|A Chain A, Crystal Structure Of A Deletion Mutant Of The Type Ii Beta
Regulatory Subunit Of Camp-Dependent Protein Kinase
Length = 305
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 416 DVESSLSILPK-ELRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIV 474
D ES + I PK + +RN +E C D+L FK LD E + + D + + H++
Sbjct: 15 DAESRI-IHPKTDDQRNRLQEACKDILL----FKNLDPEQMSQVLDAMFEKLVKEGEHVI 69
Query: 475 LEGDPIYEMLFIVQGKMWIY 494
+GD I +G IY
Sbjct: 70 DQGDDGDNFYVIDRGTFDIY 89
>pdb|2W0I|A Chain A, Structure Of C-Terminal Actin Depolymerizing Factor
Homology (Adf-H) Domain Of Human Twinfilin-2
Length = 135
Score = 30.4 bits (67), Expect = 2.8, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 12/79 (15%)
Query: 466 FYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKF-----ISRKD 520
F +KHTH EGDP+ ++FI + + KER S+ S D+ + I++K
Sbjct: 61 FLYKHTH---EGDPLESVVFIYSMPGYKCSIKERMLYSSCKSRLLDSVEQDFHLEIAKKI 117
Query: 521 HLADGDFWGEELVAWVLRD 539
+ D G EL A L D
Sbjct: 118 EIGD----GAELTAEFLDD 132
>pdb|1RL3|A Chain A, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RL3|B Chain B, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RGS|A Chain A, Regulatory Subunit Of Camp Dependent Protein Kinase
Length = 288
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 15/116 (12%)
Query: 415 IDVESSLSILPKELRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIV 474
ID +S IL R KR++ + L V ++LD+ + D ++P + IV
Sbjct: 133 IDRDSYRRILMGSTLR--KRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIV 190
Query: 475 LEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGE 530
++G+P E I++G + + +N +F+ L D++GE
Sbjct: 191 VQGEPGDEFFIILEGSAAVLQRRS------------ENEEFVE-VGRLGPSDYFGE 233
>pdb|1NE4|A Chain A, Crystal Structure Of Rp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
pdb|1NE6|A Chain A, Crystal Structure Of Sp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
Length = 283
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 15/116 (12%)
Query: 415 IDVESSLSILPKELRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIV 474
ID +S IL R KR++ + L V ++LD+ + D ++P + IV
Sbjct: 131 IDRDSYRRILMGSTLR--KRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIV 188
Query: 475 LEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGE 530
++G+P E I++G + + +N +F+ L D++GE
Sbjct: 189 VQGEPGDEFFIILEGSAAVLQRRS------------ENEEFVE-VGRLGPSDYFGE 231
>pdb|2QCS|B Chain B, A Complex Structure Between The Catalytic And Regulatory
Subunit Of Protein Kinase A That Represents The
Inhibited State
Length = 291
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 15/116 (12%)
Query: 415 IDVESSLSILPKELRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIV 474
ID +S IL R KR++ + L V ++LD+ + D ++P + IV
Sbjct: 135 IDRDSYRRILMGSTLR--KRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIV 192
Query: 475 LEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGE 530
++G+P E I++G + + +N +F+ L D++GE
Sbjct: 193 VQGEPGDEFFIILEGSAAVLQRRS------------ENEEFVE-VGRLGPSDYFGE 235
>pdb|1YK1|A Chain A, Structure Of Natriuretic Peptide Receptor-C Complexed With
Brain Natriuretic Peptide
pdb|1YK1|B Chain B, Structure Of Natriuretic Peptide Receptor-C Complexed With
Brain Natriuretic Peptide
Length = 479
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 551 SVQALKNVEAFGLMAHDLKHVFIE--------HQVASSTEFNSNYSVKDAARIIQLAWRR 602
S++ +VE GL D ++F+E + +A + YS KD +IIQ W R
Sbjct: 335 SMEVKSSVEKQGLNMEDYVNMFVEGFHDAILLYVLALHEVLRAGYSKKDGGKIIQQTWNR 394
Query: 603 RY 604
+
Sbjct: 395 TF 396
>pdb|1YK0|A Chain A, Structure Of Natriuretic Peptide Receptor-c Complexed With
Atrial Natriuretic Peptide
pdb|1YK0|B Chain B, Structure Of Natriuretic Peptide Receptor-c Complexed With
Atrial Natriuretic Peptide
Length = 480
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 551 SVQALKNVEAFGLMAHDLKHVFIE--------HQVASSTEFNSNYSVKDAARIIQLAWRR 602
S++ +VE GL D ++F+E + +A + YS KD +IIQ W R
Sbjct: 336 SMEVKSSVEKQGLNMEDYVNMFVEGFHDAILLYVLALHEVLRAGYSKKDGGKIIQQTWNR 395
Query: 603 RY 604
+
Sbjct: 396 TF 397
>pdb|3IDC|B Chain B, Crystal Structure Of (102-265)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
Length = 164
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 416 DVESSLSILPK-ELRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIV 474
D ES + I PK + +RN +E C D+L FK LD E + + D + + H++
Sbjct: 25 DAESRI-IHPKTDDQRNRLQEACKDILL----FKNLDPEQMSQVLDAMFEKLVKEGEHVI 79
Query: 475 LEGDPIYEMLFIVQGKMWIY 494
+GD I +G IY
Sbjct: 80 DQGDDGDNFYVIDRGTFDIY 99
>pdb|3IDB|B Chain B, Crystal Structure Of (108-268)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
Length = 161
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 416 DVESSLSILPK-ELRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIV 474
D ES + I PK + +RN +E C D+L FK LD E + + D + + H++
Sbjct: 19 DAESRI-IHPKTDDQRNRLQEACKDILL----FKNLDPEQMSQVLDAMFEKLVKEGEHVI 73
Query: 475 LEGDPIYEMLFIVQGKMWIY 494
+GD I +G IY
Sbjct: 74 DQGDDGDNFYVIDRGTFDIY 93
>pdb|1JDN|A Chain A, Crystal Structure Of Hormone Receptor
pdb|1JDP|A Chain A, Crystal Structure Of Hormone/receptor Complex
pdb|1JDP|B Chain B, Crystal Structure Of Hormone/receptor Complex
Length = 441
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 551 SVQALKNVEAFGLMAHDLKHVFIE--------HQVASSTEFNSNYSVKDAARIIQLAWRR 602
S++ +VE GL D ++F+E + +A + YS KD +IIQ W R
Sbjct: 293 SMEVKSSVEKQGLNMEDYVNMFVEGFHDAILLYVLALHEVLRAGYSKKDGGKIIQQTWNR 352
Query: 603 RY 604
+
Sbjct: 353 TF 354
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,865,950
Number of Sequences: 62578
Number of extensions: 664533
Number of successful extensions: 1646
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1636
Number of HSP's gapped (non-prelim): 22
length of query: 614
length of database: 14,973,337
effective HSP length: 105
effective length of query: 509
effective length of database: 8,402,647
effective search space: 4276947323
effective search space used: 4276947323
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)