Query 007183
Match_columns 614
No_of_seqs 313 out of 2636
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 20:04:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007183.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007183hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 100.0 2.7E-96 6E-101 805.7 39.2 497 37-611 63-574 (727)
2 PLN03192 Voltage-dependent pot 100.0 5.4E-70 1.2E-74 633.9 41.8 470 5-579 11-491 (823)
3 KOG0500 Cyclic nucleotide-gate 100.0 8.2E-66 1.8E-70 525.2 35.3 401 103-582 27-431 (536)
4 KOG0501 K+-channel KCNQ [Inorg 100.0 2.4E-66 5.2E-71 532.9 19.9 462 33-582 200-666 (971)
5 KOG0499 Cyclic nucleotide-gate 100.0 2.5E-59 5.5E-64 483.0 24.7 428 41-584 217-651 (815)
6 KOG3713 Voltage-gated K+ chann 99.5 1.6E-13 3.4E-18 143.5 13.7 187 105-373 240-436 (477)
7 PRK09392 ftrB transcriptional 99.3 1.1E-11 2.4E-16 123.8 13.3 121 438-582 6-127 (236)
8 cd00038 CAP_ED effector domain 99.3 1.4E-11 3.1E-16 107.0 12.4 113 446-581 1-114 (115)
9 KOG0614 cGMP-dependent protein 99.3 2E-12 4.2E-17 134.8 6.3 115 432-574 147-261 (732)
10 PF00520 Ion_trans: Ion transp 99.3 3.8E-12 8.3E-17 122.6 7.6 190 109-363 1-200 (200)
11 PRK11753 DNA-binding transcrip 99.3 7.4E-11 1.6E-15 115.6 14.7 112 448-581 6-118 (211)
12 KOG1113 cAMP-dependent protein 99.2 1.7E-11 3.6E-16 122.9 8.6 109 438-574 121-229 (368)
13 PF00027 cNMP_binding: Cyclic 99.2 4.9E-11 1.1E-15 99.8 9.7 90 464-576 1-91 (91)
14 smart00100 cNMP Cyclic nucleot 99.2 1.6E-10 3.4E-15 100.9 13.2 112 446-578 1-113 (120)
15 KOG0614 cGMP-dependent protein 99.2 2.2E-11 4.8E-16 127.0 8.1 124 434-579 267-392 (732)
16 PF07885 Ion_trans_2: Ion chan 99.2 2.1E-10 4.4E-15 94.1 9.9 55 314-368 24-78 (79)
17 PRK10402 DNA-binding transcrip 99.2 1.7E-10 3.6E-15 114.6 10.9 106 453-581 22-128 (226)
18 COG0664 Crp cAMP-binding prote 99.1 7.2E-10 1.5E-14 108.1 12.7 118 442-582 3-121 (214)
19 KOG1545 Voltage-gated shaker-l 99.1 2.8E-11 6.2E-16 120.6 2.0 49 317-365 396-444 (507)
20 PRK11161 fumarate/nitrate redu 99.1 1.4E-09 3.1E-14 108.5 13.7 117 441-581 15-133 (235)
21 PLN02868 acyl-CoA thioesterase 99.1 1.3E-09 2.8E-14 117.9 13.5 111 438-574 7-117 (413)
22 COG2905 Predicted signal-trans 99.0 1.9E-09 4.1E-14 114.5 12.9 131 438-601 6-137 (610)
23 KOG1419 Voltage-gated K+ chann 98.9 5.2E-09 1.1E-13 110.2 9.7 89 310-405 265-353 (654)
24 PRK09391 fixK transcriptional 98.9 1.4E-08 3E-13 101.1 10.8 100 457-582 33-133 (230)
25 TIGR03697 NtcA_cyano global ni 98.8 2.9E-08 6.3E-13 95.7 11.5 92 470-582 1-93 (193)
26 KOG1113 cAMP-dependent protein 98.8 9.7E-09 2.1E-13 103.3 8.2 115 433-574 234-348 (368)
27 KOG1420 Ca2+-activated K+ chan 98.8 1.2E-08 2.6E-13 107.2 8.2 127 313-449 287-418 (1103)
28 PRK13918 CRP/FNR family transc 98.7 3.9E-08 8.4E-13 95.7 9.4 84 461-568 5-90 (202)
29 PRK10537 voltage-gated potassi 98.3 1.8E-05 3.8E-10 84.6 17.4 54 314-367 168-221 (393)
30 KOG4390 Voltage-gated A-type K 98.2 4.5E-08 9.7E-13 98.8 -5.4 54 316-369 358-415 (632)
31 KOG3684 Ca2+-activated K+ chan 97.9 0.00033 7.2E-09 73.3 15.5 91 311-409 284-374 (489)
32 PF01007 IRK: Inward rectifier 97.8 0.00021 4.5E-09 74.5 11.7 60 313-372 83-144 (336)
33 KOG1418 Tandem pore domain K+ 97.6 7.4E-05 1.6E-09 81.0 5.4 58 314-371 115-172 (433)
34 KOG2968 Predicted esterase of 97.3 0.00021 4.6E-09 79.9 4.6 103 453-578 499-602 (1158)
35 PRK11832 putative DNA-binding 96.8 0.031 6.8E-07 53.9 13.7 94 454-574 14-108 (207)
36 KOG2968 Predicted esterase of 96.6 0.016 3.5E-07 65.5 11.2 118 457-606 110-229 (1158)
37 KOG4404 Tandem pore domain K+ 96.5 0.00091 2E-08 67.2 0.9 55 314-368 80-134 (350)
38 PF08412 Ion_trans_N: Ion tran 96.4 0.0006 1.3E-08 54.8 -0.9 31 41-83 36-66 (77)
39 KOG4404 Tandem pore domain K+ 96.4 0.0036 7.9E-08 63.0 4.2 58 315-372 187-252 (350)
40 PF04831 Popeye: Popeye protei 96.3 0.063 1.4E-06 48.7 11.1 110 450-582 15-127 (153)
41 KOG3542 cAMP-regulated guanine 95.8 0.028 6.1E-07 61.4 7.9 110 437-574 279-390 (1283)
42 KOG1418 Tandem pore domain K+ 95.4 0.006 1.3E-07 66.0 1.1 48 313-360 241-296 (433)
43 KOG3827 Inward rectifier K+ ch 94.7 0.16 3.4E-06 52.8 9.0 56 314-369 112-169 (400)
44 KOG3542 cAMP-regulated guanine 93.6 0.11 2.4E-06 57.0 5.5 104 425-564 23-126 (1283)
45 PLN03223 Polycystin cation cha 90.5 7.9 0.00017 46.9 16.0 24 104-127 1212-1235(1634)
46 PF00612 IQ: IQ calmodulin-bin 89.4 0.51 1.1E-05 27.8 2.9 19 591-610 2-20 (21)
47 KOG3193 K+ channel subunit [In 87.2 0.22 4.7E-06 53.5 0.6 40 316-355 219-258 (1087)
48 COG4709 Predicted membrane pro 85.7 3.3 7.1E-05 39.0 7.3 79 378-458 4-86 (195)
49 smart00015 IQ Short calmodulin 82.2 1.7 3.7E-05 27.0 2.8 20 590-610 3-22 (26)
50 PF08006 DUF1700: Protein of u 80.0 7.6 0.00016 36.9 7.8 59 378-438 4-66 (181)
51 KOG2302 T-type voltage-gated C 78.4 50 0.0011 39.0 14.4 38 109-160 1160-1200(1956)
52 KOG2301 Voltage-gated Ca2+ cha 71.7 67 0.0015 40.7 14.5 80 104-203 472-553 (1592)
53 KOG3676 Ca2+-permeable cation 71.4 66 0.0014 37.2 13.2 74 327-401 601-681 (782)
54 PF14377 DUF4414: Domain of un 70.8 7.6 0.00016 33.6 4.7 45 391-435 51-105 (108)
55 PF07883 Cupin_2: Cupin domain 66.2 10 0.00022 29.2 4.2 31 465-495 3-34 (71)
56 KOG2301 Voltage-gated Ca2+ cha 62.9 18 0.0004 45.5 7.4 44 104-164 871-916 (1592)
57 PF00060 Lig_chan: Ligand-gate 62.8 12 0.00026 33.7 4.6 76 310-391 40-115 (148)
58 PF05899 Cupin_3: Protein of u 56.0 20 0.00043 28.5 4.2 31 481-530 26-56 (74)
59 PF13314 DUF4083: Domain of un 55.3 75 0.0016 24.0 6.6 39 349-390 16-57 (58)
60 PRK13290 ectC L-ectoine syntha 48.2 84 0.0018 27.9 7.3 50 463-531 38-88 (125)
61 PF14377 DUF4414: Domain of un 46.0 49 0.0011 28.5 5.4 51 392-442 8-71 (108)
62 PF15157 IQ-like: IQ-like 45.5 16 0.00036 29.7 2.1 16 591-607 48-63 (97)
63 TIGR03037 anthran_nbaC 3-hydro 40.3 54 0.0012 30.4 4.9 39 474-529 43-81 (159)
64 PF02037 SAP: SAP domain; Int 38.8 51 0.0011 22.0 3.4 26 380-405 5-35 (35)
65 PF07697 7TMR-HDED: 7TM-HD ext 38.3 1.7E+02 0.0038 28.1 8.7 59 422-481 146-207 (222)
66 PF10011 DUF2254: Predicted me 37.9 1E+02 0.0022 32.9 7.4 138 311-475 97-237 (371)
67 PLN03192 Voltage-dependent pot 37.5 7.8E+02 0.017 29.3 18.3 41 422-462 327-371 (823)
68 COG5559 Uncharacterized conser 34.2 37 0.0008 25.6 2.3 19 418-436 5-23 (65)
69 COG0662 {ManC} Mannose-6-phosp 33.6 89 0.0019 27.6 5.2 36 460-495 36-72 (127)
70 smart00835 Cupin_1 Cupin. This 30.3 1E+02 0.0022 27.8 5.2 56 461-530 31-87 (146)
71 COG1917 Uncharacterized conser 29.9 1E+02 0.0022 27.1 5.1 49 463-531 46-95 (131)
72 PRK13264 3-hydroxyanthranilate 29.3 77 0.0017 29.9 4.1 36 478-529 52-87 (177)
73 KOG0162 Myosin class I heavy c 29.1 37 0.0008 38.7 2.3 17 592-609 698-714 (1106)
74 cd07313 terB_like_2 tellurium 27.8 3.6E+02 0.0077 22.4 7.9 61 378-438 18-81 (104)
75 PF15128 T_cell_tran_alt: T-ce 26.5 95 0.0021 25.3 3.6 30 575-605 21-50 (92)
76 COG3718 IolB Uncharacterized e 25.5 2.1E+02 0.0046 28.2 6.4 31 465-495 34-64 (270)
77 COG5559 Uncharacterized conser 25.5 69 0.0015 24.2 2.4 22 390-411 8-29 (65)
78 PF06865 DUF1255: Protein of u 25.0 2.8E+02 0.006 23.4 6.2 46 466-531 29-74 (94)
79 PF14841 FliG_M: FliG middle d 24.8 81 0.0018 25.4 3.1 40 418-465 30-69 (79)
80 KOG1419 Voltage-gated K+ chann 24.8 53 0.0011 36.4 2.5 48 104-163 124-178 (654)
81 PRK10579 hypothetical protein; 24.4 4.3E+02 0.0093 22.2 7.2 47 465-531 28-74 (94)
82 KOG0498 K+-channel ERG and rel 24.3 3.4E+02 0.0075 31.7 9.0 154 422-601 371-553 (727)
83 PRK06771 hypothetical protein; 24.3 3.1E+02 0.0068 23.0 6.3 48 356-403 14-61 (93)
84 KOG2378 cAMP-regulated guanine 23.2 70 0.0015 34.5 2.9 42 524-574 1-43 (573)
85 PHA03029 hypothetical protein; 22.3 2.8E+02 0.006 22.0 5.3 39 338-376 2-40 (92)
86 PF07146 DUF1389: Protein of u 21.6 8.9E+02 0.019 25.2 10.6 79 389-467 35-141 (314)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-96 Score=805.74 Aligned_cols=497 Identities=34% Similarity=0.551 Sum_probs=437.0
Q ss_pred ccccccccccchhHHhhcceEEEEecCCCCcchhhHHHHHHHHhhheeeeeEEEeCCceEEEecccccchhhhHHHHHHH
Q 007183 37 KLLELSDKNCLLKALVNWNKIIVHLQGNSGSSIQLFLSMAAVSIDPLFFYIPVVNDNKKCIRLDYKLAVTATGLRSLFDF 116 (614)
Q Consensus 37 k~~~~~~i~P~s~~~~~Wd~~~~~~~~~~~~~~~~~~~~~~~~v~pl~~y~~~~~~~~~~f~~~~~~~~~~~~~~~~~d~ 116 (614)
+.+...+++|.|+|++.||.++++ +|+++++++|+++|++.....+.| .|..+...+.+++.++|+
T Consensus 63 ~~~~~~Ii~P~s~~~~~W~~~~Ll------------~~iya~~v~P~~f~f~~~~~~~~~--~d~~~~~~l~v~d~ivD~ 128 (727)
T KOG0498|consen 63 DKSRKWILDPYSPFYRVWNKFFLL------------LVIYAAFVDPLFFYFLLIDDERKC--IDGKLAAPLTVLDTIVDI 128 (727)
T ss_pred ccccceeECCCChHHHHHHHHHHH------------HHHHHHHhccceeeEEeccccccc--ccccccCceeeHHHHHHH
Confidence 455567999999999999999999 999999999999999999888888 777788899999999999
Q ss_pred HHHHhhhhhceeeEeecccCCc-eeecCHHHHHHHHHhhhc-ccccccccHhHHHHHHhcC------Cc-cchhHHHHhh
Q 007183 117 LYIFYITPQLLADLVASVNAKH-EANNSLKSLMKFWLGSLF-VDLPAVFPLPQLVILSIIP------RM-SGLKILSGMM 187 (614)
Q Consensus 117 ~f~~DI~l~F~t~y~~~~~~~g-~~V~d~~~Ia~~Ylk~~F-~Dlls~lP~~~l~~~~~~~------~~-~~~~~l~~~r 187 (614)
+|++||+++|+|||.++ ++ ++|.||++||+||+++|| +|++|++|+++++.+..+. .. ....++.+.|
T Consensus 129 fflvdIvL~Frtayv~~---~s~elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~~~~~~~~~~~~~~~~l~~il~~~r 205 (727)
T KOG0498|consen 129 FFLVDIVLNFRTAYVDP---SSYELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVVLVVIGSTSLALESTILVGILLLQR 205 (727)
T ss_pred HHHHHHHHhheEEEECC---CCceeeeCHHHHHHHHHhhhHHHHHHHhcChhhheeeeeecccchhhhHHHHHHHHHHHH
Confidence 99999999999999997 55 599999999999999999 9999999999998876531 00 1223455666
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhccccCCCCCCcccc
Q 007183 188 LLKYSVLIQFVLRMIRIYPWTLGKLGEATWAIAAFNLLLYVLASHVFGALWYFSAIERQTECWKKACLFNNTGCTRGSFD 267 (614)
Q Consensus 188 llrl~rl~~~l~rl~r~~~l~~~~~~~~~~~~~~~~Li~~~l~~H~~aC~w~~i~~~~~~~~~~~~c~~~~~~c~~~~l~ 267 (614)
|+|+.|+.+++.|+.+. .++..+++|+..+.+|+++++++||+||+||++|.++...||.++
T Consensus 206 L~Rl~Rv~~l~~r~~k~----~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~-------------- 267 (727)
T KOG0498|consen 206 LPRLRRVIPLFARLEKD----TGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKA-------------- 267 (727)
T ss_pred HHHHHHHHHHHHHHHHH----hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc--------------
Confidence 66666666666666554 456778899997788889999999999999999999887777532
Q ss_pred cCCCCCCcccccccCCCCCCCCCCcccchhhhhhccCcccCCChhhHHHHHHHHhhhhcccccCCCccCCChhhHHHHHH
Q 007183 268 CYDSLGNYEFLNEFCPTKPQNTTILDFGIFQHALQSGIVEVPDFPQKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVIL 347 (614)
Q Consensus 268 ~~~~~~~~sWi~~~~~~~~~~~~~~~~~~y~~~l~~~~~~~~~~~~~Yl~SlYwa~~TmtTvGyGdi~p~~~~E~i~~i~ 347 (614)
+|+...+..-++.+..++||+ .+++.+|++|+||+++||||+|||+++|+|..|++|+|+
T Consensus 268 --------tw~~~l~~~~~~~~~~~~fg~------------~s~~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~ 327 (727)
T KOG0498|consen 268 --------TWLGSLGRLLSCYNLSFTFGI------------YSLALKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIF 327 (727)
T ss_pred --------ccccccccccccCcccccccc------------hhHHHHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHH
Confidence 455432100011233456763 467789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHhcCCCCChhHHhhcCChH
Q 007183 348 VTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKE 427 (614)
Q Consensus 348 ~ml~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~i~~ym~~~~ip~~L~~rV~~y~~~~~~~~~~~~~~~il~~Lp~~ 427 (614)
+|++|.++||++||||++++++++.+.++|+.++.++++||++++||++||+||++|++|+|..++|+||+++|++||+.
T Consensus 328 ~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~ 407 (727)
T KOG0498|consen 328 IMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKD 407 (727)
T ss_pred HHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccc
Q 007183 428 LRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTS 507 (614)
Q Consensus 428 Lr~ei~~~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~ 507 (614)
||++|..|+|.++++++|+|+++|++++.+|+.++++..|+|||+|++|||+.++||||.+|.+++.. .+|+.
T Consensus 408 LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~----~~~g~--- 480 (727)
T KOG0498|consen 408 LRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESIT----TDGGG--- 480 (727)
T ss_pred HHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEE----ccCCc---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 45442
Q ss_pred cccCcccccccceecCCCCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh------HHHHhHh
Q 007183 508 HSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE------HQVASST 581 (614)
Q Consensus 508 ~~~~n~~~~~~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~------~~l~~~~ 581 (614)
++| ...+++||+|||.-++++++. |+++||+|+|.|+++.|+++||..++++ ..+++.+
T Consensus 481 --~~~------~~~L~~Gd~~GeEl~~~~~~~-------p~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~ 545 (727)
T KOG0498|consen 481 --FFV------VAILGPGDFFGEELLTWCLDL-------PQTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTF 545 (727)
T ss_pred --eEE------EEEecCCCccchHHHHHHhcC-------CCCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHH
Confidence 334 899999999997666666631 3588999999999999999999999999 7788889
Q ss_pred hhcccchhhHHHHHHHHHHHHHHHhhhhhh
Q 007183 582 EFNSNYSVKDAARIIQLAWRRRYSSRNLLK 611 (614)
Q Consensus 582 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (614)
++++++||+|+|+.||+||| ||++|+..+
T Consensus 546 r~~s~~~r~~aa~~iq~a~r-~~~~~~~~~ 574 (727)
T KOG0498|consen 546 RYYSHLWRTWAACFIQAAWR-RHIKRKGEE 574 (727)
T ss_pred HHhhhhhhhhhhhhHHHHHH-HHHHhhccc
Confidence 99999999999999999999 999988654
No 2
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=5.4e-70 Score=633.87 Aligned_cols=470 Identities=15% Similarity=0.218 Sum_probs=372.9
Q ss_pred CCCcchhhhhhccccccccCCcchhhhhc-----CccccccccccccchhHHhhcceEEEEecCCCCcchhhHHHHHHHH
Q 007183 5 GTGRDEAESRSQINQRSSISSPVKIYEMG-----GIVKLLELSDKNCLLKALVNWNKIIVHLQGNSGSSIQLFLSMAAVS 79 (614)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~k~~~~~~i~P~s~~~~~Wd~~~~~~~~~~~~~~~~~~~~~~~~ 79 (614)
+.+++++|.+++.=-.+|+++-.- +..| ...-..++.+|+|.+++++.||.++++ +++++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ii~P~~~~~~~Wd~~~~~------------~~~y~~~ 77 (823)
T PLN03192 11 RGKGTGEEDDSGSLSLRNLSKVIL-PPLGVPSYNQNHIGSDGWIISPMDSRYRWWETLMVV------------LVAYSAW 77 (823)
T ss_pred CCCCCcccCCCcceehhhcchhhc-cccCCCccccCccccCCeEECCCCcHHHHHHHHHHH------------HHHHHHH
Confidence 334444554454444445544432 2222 222234478999999999999999998 8888888
Q ss_pred hhheeeeeEEEeCCceEEEecccccchhhhHHHHHHHHHHHhhhhhceeeEeecccCCceeecCHHHHHHHHHhhhc-cc
Q 007183 80 IDPLFFYIPVVNDNKKCIRLDYKLAVTATGLRSLFDFLYIFYITPQLLADLVASVNAKHEANNSLKSLMKFWLGSLF-VD 158 (614)
Q Consensus 80 v~pl~~y~~~~~~~~~~f~~~~~~~~~~~~~~~~~d~~f~~DI~l~F~t~y~~~~~~~g~~V~d~~~Ia~~Ylk~~F-~D 158 (614)
++|+.+ +|... .....+.++++++|++|++||+++|+|||+++ ++|.+|+||++|+++|+|+|| +|
T Consensus 78 ~~p~~~----------~F~~~-~~~~~~~~~d~i~~~~F~iDi~l~f~~ay~d~--~~~~lV~d~~~I~~~Yl~~~f~~D 144 (823)
T PLN03192 78 VYPFEV----------AFLNA-SPKRGLEIADNVVDLFFAVDIVLTFFVAYIDP--RTQLLVRDRKKIAVRYLSTWFLMD 144 (823)
T ss_pred HHHHHH----------HeeCC-CCCCCeeeHHHHHHHHHHHHHHhheeEEEEeC--CCcEEEeCHHHHHHHHHHHhHHHH
Confidence 888643 23211 11235688999999999999999999999995 567899999999999999999 99
Q ss_pred ccccccHhHHHHHHhcCCcc---chhHHHHhhHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHH-HHHHHHH
Q 007183 159 LPAVFPLPQLVILSIIPRMS---GLKILSGMMLLKYSVLIQFVLRMIRIYPWTLGKLGEATWAIAAFNLLLY-VLASHVF 234 (614)
Q Consensus 159 lls~lP~~~l~~~~~~~~~~---~~~~l~~~rllrl~rl~~~l~rl~r~~~l~~~~~~~~~~~~~~~~Li~~-~l~~H~~ 234 (614)
++|++|++++..... .... ....++++|++|+.|+.+++.++.+..+. ......+.+++.+ ++++||+
T Consensus 145 lis~lP~~~i~~~~~-~~~~~~~~~~~l~llrl~Rl~ri~~~~~~le~~~~~-------~~~~~~~~kli~~~l~~~H~~ 216 (823)
T PLN03192 145 VASTIPFQALAYLIT-GTVKLNLSYSLLGLLRFWRLRRVKQLFTRLEKDIRF-------SYFWIRCARLLSVTLFLVHCA 216 (823)
T ss_pred HHHHhHHHHHHHHhc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHH
Confidence 999999998754331 1111 12234445555555544444444332211 1112234565544 4679999
Q ss_pred HHHHHHHhhhhhhHHHHHhccccCCCCCCcccccCCCCCCcccccccCCCCCCCCCCcccchhhhhhccCcccCCChhhH
Q 007183 235 GALWYFSAIERQTECWKKACLFNNTGCTRGSFDCYDSLGNYEFLNEFCPTKPQNTTILDFGIFQHALQSGIVEVPDFPQK 314 (614)
Q Consensus 235 aC~w~~i~~~~~~~~~~~~c~~~~~~c~~~~l~~~~~~~~~sWi~~~~~~~~~~~~~~~~~~y~~~l~~~~~~~~~~~~~ 314 (614)
||+||+++.. + +..+.+|+..... + ..+.+++.+
T Consensus 217 aC~~y~i~~~--------------------~-----~~~~~~Wi~~~~~---------~------------~~~~s~~~~ 250 (823)
T PLN03192 217 GCLYYLIADR--------------------Y-----PHQGKTWIGAVIP---------N------------FRETSLWIR 250 (823)
T ss_pred HHHHHHHHhh--------------------c-----CCCCCchHHHhhh---------c------------cccCcHHHH
Confidence 9999999831 0 2345689853111 1 236789999
Q ss_pred HHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhhcCCCC
Q 007183 315 FLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQKLS 394 (614)
Q Consensus 315 Yl~SlYwa~~TmtTvGyGdi~p~~~~E~i~~i~~ml~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~i~~ym~~~~ip 394 (614)
|++|+|||++|||||||||++|.|..|+++++++|++|+++|||++|++++++.+.+.+.++|+++++.+++||++++||
T Consensus 251 Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp 330 (823)
T PLN03192 251 YISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLP 330 (823)
T ss_pred HHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCChhHHhhcCChHHHHHHHHHHHHHHhccCcccccccHHHHHHHhhhccceeecCCcEEE
Q 007183 395 RSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIV 474 (614)
Q Consensus 395 ~~L~~rV~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~ei~~~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~ 474 (614)
++||+||++|+++.|+. +..+++++++.||++||.+|..+++.+.++++++|+++|++++.+|+..++++.|+|||.|+
T Consensus 331 ~~lq~ri~~y~~~~~~~-~~~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~ 409 (823)
T PLN03192 331 PRLKDQILAYMCLRFKA-ESLNQQQLIDQLPKSICKSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVI 409 (823)
T ss_pred HHHHHHHHHHHHHHHhh-ccccHHHHHHHcCHHHHHHHHHHHHHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEE
Confidence 99999999999999975 55789999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeeechhhHhhhccCcCCCCCCccceEEE
Q 007183 475 LEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQA 554 (614)
Q Consensus 475 ~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A 554 (614)
.+||.++++|||.+|+|++... .++.+.. +..+++|++|||.+++.+ .+++++++|
T Consensus 410 ~qge~~~~lY~I~~G~V~i~~~---~~~~e~~------------l~~l~~Gd~FGE~~~l~~---------~p~~~t~ra 465 (823)
T PLN03192 410 MQNEAPDDVYIVVSGEVEIIDS---EGEKERV------------VGTLGCGDIFGEVGALCC---------RPQSFTFRT 465 (823)
T ss_pred ECCCCCceEEEEEecEEEEEEe---cCCccee------------eEEccCCCEecchHHhcC---------CCCCCeEEE
Confidence 9999999999999999999873 2333322 788999999999988732 258889999
Q ss_pred cceEEEEEeCHhhHHHHhhh-HHHHh
Q 007183 555 LKNVEAFGLMAHDLKHVFIE-HQVAS 579 (614)
Q Consensus 555 ~~~~~l~~Ls~~df~~ll~~-~~l~~ 579 (614)
.+.|+++.|++++|.++++. |+...
T Consensus 466 ~~~s~ll~l~~~~f~~ll~~~p~d~~ 491 (823)
T PLN03192 466 KTLSQLLRLKTSTLIEAMQTRQEDNV 491 (823)
T ss_pred cccEEEEEEEHHHHHHHHHHhhHHHH
Confidence 99999999999999999998 55443
No 3
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=8.2e-66 Score=525.22 Aligned_cols=401 Identities=21% Similarity=0.313 Sum_probs=342.5
Q ss_pred ccchhhhHHHHHHHHHHHhhhhhceeeEeecccCCceeecCHHHHHHHHHhhh-c-ccccccccHhHHHHHHhcCCccch
Q 007183 103 LAVTATGLRSLFDFLYIFYITPQLLADLVASVNAKHEANNSLKSLMKFWLGSL-F-VDLPAVFPLPQLVILSIIPRMSGL 180 (614)
Q Consensus 103 ~~~~~~~~~~~~d~~f~~DI~l~F~t~y~~~~~~~g~~V~d~~~Ia~~Ylk~~-F-~Dlls~lP~~~l~~~~~~~~~~~~ 180 (614)
....|..+|+++|++|++||+++.+|||++ +|.+|+|-++.++||..+. | +|++|.+|+|+++++.. ..
T Consensus 27 y~~~wl~ld~~~D~vyllDi~v~~R~gyle----qGllV~~~~Kl~~hY~~s~~f~lD~l~liP~D~l~~~~~-----~~ 97 (536)
T KOG0500|consen 27 YLENWLPLDYLFDFVYLLDIIVRSRTGYLE----QGLLVKDTSKLRKHYVHSTQFKLDVLSLIPLDLLLFKDG-----SA 97 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHh----cCeeehhhHHHHHHHHHhhhhhhhhhhhcchhHHhhcCC-----cc
Confidence 345789999999999999999999999998 9999999999999999876 8 99999999999988642 23
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhHHHHHhccccCC
Q 007183 181 KILSGMMLLKYSVLIQFVLRMIRIYPWTLGKLGEATWAIAAFNLLLYV-LASHVFGALWYFSAIERQTECWKKACLFNNT 259 (614)
Q Consensus 181 ~~l~~~rllrl~rl~~~l~rl~r~~~l~~~~~~~~~~~~~~~~Li~~~-l~~H~~aC~w~~i~~~~~~~~~~~~c~~~~~ 259 (614)
...+++|++|+.|+..++.|-.+ .+....+.++.+|+.++ ++.||.||++|+++..
T Consensus 98 ~~~r~nRllk~yRl~~F~~rTet--------rT~~Pn~fri~~lv~~~~ilfHWNaClYf~iS~~--------------- 154 (536)
T KOG0500|consen 98 SLERLNRLLKIYRLFEFFDRTET--------RTTYPNAFRISKLVHYCLILFHWNACLYFLISKA--------------- 154 (536)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcc--------ccCCchHHHHHHHHHHHHHHHHHhhHHHHhhhHh---------------
Confidence 55667888887777776555432 11122334577888666 5689999999999942
Q ss_pred CCCCcccccCCCCCCcccccccCCCCCCCCCCcccchhhhhhccCcccCCChhhHHHHHHHHhhhhcccccCCCccCCCh
Q 007183 260 GCTRGSFDCYDSLGNYEFLNEFCPTKPQNTTILDFGIFQHALQSGIVEVPDFPQKFLHCFRWGLRNLSCFGQNLQTSSNA 339 (614)
Q Consensus 260 ~c~~~~l~~~~~~~~~sWi~~~~~~~~~~~~~~~~~~y~~~l~~~~~~~~~~~~~Yl~SlYwa~~TmtTvGyGdi~p~~~ 339 (614)
.+++.++|+... -.++.|+ . .+..++..+|+.|+||+..||||+|- --+|.++
T Consensus 155 ----------~g~~~d~wvY~~-------i~d~~~~---~------c~~~n~~ReY~~S~YWStLTlTTiGe-~P~P~t~ 207 (536)
T KOG0500|consen 155 ----------IGFTTDDWVYPK-------INDPEFA---T------CDAGNLTREYLYSLYWSTLTLTTIGE-QPPPVTS 207 (536)
T ss_pred ----------cCccccccccCC-------ccCcccc---c------cchhHHHHHHHHHHHHHhhhhhhccC-CCCCCcC
Confidence 156677898631 1111221 0 11246889999999999999999985 3468899
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHhcCCCCChhH
Q 007183 340 WENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPDTIDVES 419 (614)
Q Consensus 340 ~E~i~~i~~ml~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~i~~ym~~~~ip~~L~~rV~~y~~~~~~~~~~~~~~~ 419 (614)
.|.+|.|+-.++|+++||-++|+++++++++|..+.+||.+|+.+++||+.|++|+.|+.||.+||+|.|.+.+..||++
T Consensus 208 ~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmna~r~EFq~~mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~~~~~DEee 287 (536)
T KOG0500|consen 208 SEYAFVIVDTLIGVLIFATIVGNVGSMVTNMNAARTEFQAKMDGIKQYMRYRKVPKALQTRVIKWFDYLWAHKKIVDEEE 287 (536)
T ss_pred chhhHHHHHHHHHHHHHhhhhccHhHHHHhhhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCChHHHHHHHHHHHHHHhccCcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeecc
Q 007183 420 SLSILPKELRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKER 499 (614)
Q Consensus 420 il~~Lp~~Lr~ei~~~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~ 499 (614)
+++.||+.||+||+.+++.+.|+++++|+++.+.++.+|+.+++++.|.|||+|+++||++.+||+|.+|.+++..
T Consensus 288 vl~~LP~kL~aeIA~nvh~dTLkkV~iF~~ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~---- 363 (536)
T KOG0500|consen 288 VLKLLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVA---- 363 (536)
T ss_pred HHHhCCHHHHhHhHHHHHHHHHHhhhHHHhcchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEEEe----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccCcccccccceecCCCCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHH
Q 007183 500 TNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVA 578 (614)
Q Consensus 500 ~~g~~~~~~~~~n~~~~~~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~ 578 (614)
.+|+. . ...+.+|++|||+++++ .+ +.-++.+|++++++++++++++|+|+|+.+++++ |+-+
T Consensus 364 dDg~t-~------------~~~L~~G~~FGEisIln-i~--g~~~gNRRtanvrSvGYSDlfvLskdDl~~aL~eYP~a~ 427 (536)
T KOG0500|consen 364 DDGVT-V------------FVTLKAGSVFGEISILN-IK--GNKNGNRRTANVRSVGYSDLFVLSKDDLWEALSEYPDAR 427 (536)
T ss_pred cCCcE-E------------EEEecCCceeeeeEEEE-Ec--CcccCCcceeeeeeeccceeeEeeHHHHHHHHHhCCHHH
Confidence 34433 3 78999999999999973 22 3334558999999999999999999999999999 6555
Q ss_pred hHhh
Q 007183 579 SSTE 582 (614)
Q Consensus 579 ~~~r 582 (614)
+...
T Consensus 428 ~~L~ 431 (536)
T KOG0500|consen 428 KRLE 431 (536)
T ss_pred HHHH
Confidence 4433
No 4
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-66 Score=532.88 Aligned_cols=462 Identities=16% Similarity=0.234 Sum_probs=377.8
Q ss_pred cCccccccccccccchhHHhhcceEEEEecCCCCcchhhHHHHHHHHhhheeeeeEEEeCCceEEEecccccchhhhHHH
Q 007183 33 GGIVKLLELSDKNCLLKALVNWNKIIVHLQGNSGSSIQLFLSMAAVSIDPLFFYIPVVNDNKKCIRLDYKLAVTATGLRS 112 (614)
Q Consensus 33 ~~~~k~~~~~~i~P~s~~~~~Wd~~~~~~~~~~~~~~~~~~~~~~~~v~pl~~y~~~~~~~~~~f~~~~~~~~~~~~~~~ 112 (614)
.+.+|.- |.+|.-.+.|+..||-++++ |.||.++++||+++|.........|.+++.
T Consensus 200 QEaPKTp-PHIiLHYcaFKt~WDWvIL~----------------------LTFYTAimVPyNvaFKnk~~~~vs~lvvDS 256 (971)
T KOG0501|consen 200 QEAPKTP-PHIILHYCAFKTIWDWVILI----------------------LTFYTAIMVPYNVAFKNKQRNNVSWLVVDS 256 (971)
T ss_pred hcCCCCC-CeEEEeeehhhhHHHHHHHH----------------------HHHHHHheeeeeeeecccccCceeEEEecc
Confidence 3455544 88888899999999988776 347888899999999877655567899999
Q ss_pred HHHHHHHHhhhhhceeeEeecccCCceeecCHHHHHHHHHhhhc-ccccccccHhHHHHHHhcCC-c-cchhHHHHhhHH
Q 007183 113 LFDFLYIFYITPQLLADLVASVNAKHEANNSLKSLMKFWLGSLF-VDLPAVFPLPQLVILSIIPR-M-SGLKILSGMMLL 189 (614)
Q Consensus 113 ~~d~~f~~DI~l~F~t~y~~~~~~~g~~V~d~~~Ia~~Ylk~~F-~Dlls~lP~~~l~~~~~~~~-~-~~~~~l~~~rll 189 (614)
++|++|++||++||+|.|+.| .|++|.||+.|+.||+|+|| +|++||+|++.+..+-.... . +..+.++..|||
T Consensus 257 iVDVIF~vDIvLNFHTTFVGP---gGEVvsdPkvIRmNYlKsWFvIDLLSCLPYDi~naF~~~degI~SLFSaLKVVRLL 333 (971)
T KOG0501|consen 257 IVDVIFFVDIVLNFHTTFVGP---GGEVVSDPKVIRMNYLKSWFVIDLLSCLPYDIFNAFERDDEGIGSLFSALKVVRLL 333 (971)
T ss_pred hhhhhhhhhhhhhcceeeecC---CCceecChhHHhHHHHHHHHHHHHHhcccHHHHHHhhcccccHHHHHHHHHHHHHH
Confidence 999999999999999999998 99999999999999999999 99999999999876543221 0 112456666666
Q ss_pred HHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhccccCCCCCCcccccC
Q 007183 190 KYSVLIQFVLRMIRIYPWTLGKLGEATWAIAAFNLLLYVLASHVFGALWYFSAIERQTECWKKACLFNNTGCTRGSFDCY 269 (614)
Q Consensus 190 rl~rl~~~l~rl~r~~~l~~~~~~~~~~~~~~~~Li~~~l~~H~~aC~w~~i~~~~~~~~~~~~c~~~~~~c~~~~l~~~ 269 (614)
|+-|+.|.+.+.+. ...+..++.+..|++++||+||+||.+|-.+. ..+..
T Consensus 334 RLGRVaRKLD~YlE-----------YGAA~LvLLlC~y~lvAHWlACiWysIGd~ev------------------~~~~~ 384 (971)
T KOG0501|consen 334 RLGRVARKLDHYLE-----------YGAAVLVLLLCVYGLVAHWLACIWYSIGDYEV------------------RDEMD 384 (971)
T ss_pred HHHHHHHHHHHHHH-----------hhHHHHHHHHHHHHHHHHHHHHhheeccchhe------------------ecccc
Confidence 66666554433322 11222233444677999999999999994221 11111
Q ss_pred CCCCCcccccccCCCCCCCCCCcccchhhhhhccCc-ccCCChhhHHHHHHHHhhhhcccccCCCccCCChhhHHHHHHH
Q 007183 270 DSLGNYEFLNEFCPTKPQNTTILDFGIFQHALQSGI-VEVPDFPQKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILV 348 (614)
Q Consensus 270 ~~~~~~sWi~~~~~~~~~~~~~~~~~~y~~~l~~~~-~~~~~~~~~Yl~SlYwa~~TmtTvGyGdi~p~~~~E~i~~i~~ 348 (614)
+....++|+..... ..++.|+|..-. .|. +..++....|+.|+||.++.|||||+|+|.|.|+.|.+|++.+
T Consensus 385 n~i~~dsWL~kLa~---~~~tpY~~~~s~----~~~~~gGPSr~S~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~m 457 (971)
T KOG0501|consen 385 NTIQPDSWLWKLAN---DIGTPYNYNLSN----KGTLVGGPSRTSAYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCM 457 (971)
T ss_pred cccccchHHHHHHh---hcCCCceeccCC----CceeecCCcccceehhhhhhhhhhhhcccccccCCCccHHHHHHHHH
Confidence 12345788764321 123444443100 011 2356777899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHhcCCCCChhHHhhcCChHH
Q 007183 349 TISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKEL 428 (614)
Q Consensus 349 ml~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~i~~ym~~~~ip~~L~~rV~~y~~~~~~~~~~~~~~~il~~Lp~~L 428 (614)
|++|.++||-++|++..|++++.+..++|++.++.+.+||+-.++|+.|.+||.+|.--.|.-++|.|-+++|...|.++
T Consensus 458 Mii~aLLYAtIFG~vTTI~QQM~s~T~rYHeMlnnVReFlKL~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDM 537 (971)
T KOG0501|consen 458 MIIGALLYATIFGHVTTIIQQMTSNTNRYHEMLNNVREFLKLYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDM 537 (971)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCccccc
Q 007183 429 RRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSH 508 (614)
Q Consensus 429 r~ei~~~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~ 508 (614)
|++|..|+++++++..|.|+-.|+..+++|+..++.....|||.|+..||..|.+.||++|.+||... ++.
T Consensus 538 kADICVHLNRKVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQD-----DEV---- 608 (971)
T KOG0501|consen 538 KADICVHLNRKVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQD-----DEV---- 608 (971)
T ss_pred ccceeeecchhhhccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEeec-----CcE----
Confidence 99999999999999999999999999999999999999999999999999999999999999999983 322
Q ss_pred ccCcccccccceecCCCCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHHhHhh
Q 007183 509 SRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 582 (614)
Q Consensus 509 ~~~n~~~~~~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~~~r 582 (614)
++++++||.||+...-- . ....+.++|+|+++|++..|.|+.++++++- ..+.+.|-
T Consensus 609 ----------VAILGKGDVFGD~FWK~----~---t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFYtAFanSFa 666 (971)
T KOG0501|consen 609 ----------VAILGKGDVFGDEFWKE----N---TLGQSAANVRALTYCDLHMIKRDKLLKVLDFYTAFANSFA 666 (971)
T ss_pred ----------EEEeecCccchhHHhhh----h---hhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHhh
Confidence 79999999999984421 1 1224778999999999999999999999987 55555443
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-59 Score=482.97 Aligned_cols=428 Identities=16% Similarity=0.265 Sum_probs=361.9
Q ss_pred ccccccch-hHHhhcceEEEEecCCCCcchhhHHHHHHHHhhheeeeeEEEeCCceEEEeccc-ccchhhhHHHHHHHHH
Q 007183 41 LSDKNCLL-KALVNWNKIIVHLQGNSGSSIQLFLSMAAVSIDPLFFYIPVVNDNKKCIRLDYK-LAVTATGLRSLFDFLY 118 (614)
Q Consensus 41 ~~~i~P~s-~~~~~Wd~~~~~~~~~~~~~~~~~~~~~~~~v~pl~~y~~~~~~~~~~f~~~~~-~~~~~~~~~~~~d~~f 118 (614)
+.-|||.. ++...|=. ++++. +.|.++++|.+.+|-.+.. .-.-|.+.|+++|+++
T Consensus 217 ~~sidp~~~r~Y~~WL~------------------lVtla----f~~N~w~IPlR~sfPyQT~dN~~~Wli~Dy~cDiIY 274 (815)
T KOG0499|consen 217 PNSIDPYTDRLYLLWLL------------------LVTLA----FNWNCWFIPLRLSFPYQTADNIHYWLIADYICDIIY 274 (815)
T ss_pred CcccCcccchHHHHHHH------------------HHHHH----HhhceeEEeeeccCCccccccchhhhhHHHHhhHHH
Confidence 56777777 67777733 33221 3455566666665544321 1235889999999999
Q ss_pred HHhhhh-hceeeEeecccCCceeecCHHHHHHHHHhhh-c-ccccccccHhHHHHHHhcCCccchhHHHHhhHHHHHHHH
Q 007183 119 IFYITP-QLLADLVASVNAKHEANNSLKSLMKFWLGSL-F-VDLPAVFPLPQLVILSIIPRMSGLKILSGMMLLKYSVLI 195 (614)
Q Consensus 119 ~~DI~l-~F~t~y~~~~~~~g~~V~d~~~Ia~~Ylk~~-F-~Dlls~lP~~~l~~~~~~~~~~~~~~l~~~rllrl~rl~ 195 (614)
++|+++ +=+.-|.- .|.+|+|.+..++||+++. | +|++|++|++++++.+. .....|++|+|++..++
T Consensus 275 llDmlf~q~Rl~fvr----gG~~ik~kndtrk~Yl~sr~FklDllsiLPldllY~~~G-----~~p~wR~~R~lK~~sF~ 345 (815)
T KOG0499|consen 275 LLDMLFIQPRLQFVR----GGDIIKDKNDTRKHYLTSRKFKLDLLSILPLDLLYLFFG-----FNPMWRANRMLKYTSFF 345 (815)
T ss_pred HHHHhhhhhhheeee----CceEEEechHHHHHHHHhhhhhhhHHhhhhHHHHHHHhc-----cchhhhhhhHHHHHHHH
Confidence 999985 55666776 8999999999999999986 9 99999999999988763 34667888888887777
Q ss_pred HHHHHHHhhhhcccccchhhhHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhHHHHHhccccCCCCCCcccccCCCCCC
Q 007183 196 QFVLRMIRIYPWTLGKLGEATWAIAAFNLLLYV-LASHVFGALWYFSAIERQTECWKKACLFNNTGCTRGSFDCYDSLGN 274 (614)
Q Consensus 196 ~~l~rl~r~~~l~~~~~~~~~~~~~~~~Li~~~-l~~H~~aC~w~~i~~~~~~~~~~~~c~~~~~~c~~~~l~~~~~~~~ 274 (614)
.++.++-+++ ...+..++++...|+ +++|+-||++|+.+-. ++.+.
T Consensus 346 e~~~~Le~i~--------s~~y~~RV~rT~~YmlyilHinacvYY~~Say-------------------------qglG~ 392 (815)
T KOG0499|consen 346 EFNHHLESIM--------SKAYIYRVIRTTGYLLYILHINACVYYWASAY-------------------------QGLGT 392 (815)
T ss_pred HHHHHHHHHh--------cchhhhhhHHHHHHHHHHHhhhHHHHHHHHhh-------------------------ccccc
Confidence 7554444432 345666777777777 5689999999998721 15678
Q ss_pred cccccccCCCCCCCCCCcccchhhhhhccCcccCCChhhHHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHH
Q 007183 275 YEFLNEFCPTKPQNTTILDFGIFQHALQSGIVEVPDFPQKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLV 354 (614)
Q Consensus 275 ~sWi~~~~~~~~~~~~~~~~~~y~~~l~~~~~~~~~~~~~Yl~SlYwa~~TmtTvGyGdi~p~~~~E~i~~i~~ml~G~~ 354 (614)
+.|+.+ +-...|++|+|||+-|++|+| |.-.|.|..|++|..+--+.|++
T Consensus 393 ~rWVyd-----------------------------g~Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGVF 442 (815)
T KOG0499|consen 393 TRWVYD-----------------------------GEGNEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGVF 442 (815)
T ss_pred ceeEEc-----------------------------CCCCceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHH
Confidence 889963 123569999999999999999 67788999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHhcCCCCChhHHhhcCChHHHHHHHH
Q 007183 355 LMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKR 434 (614)
Q Consensus 355 ~fa~iig~i~~il~~~~~~~~~~~~~~~~i~~ym~~~~ip~~L~~rV~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~ei~~ 434 (614)
+||.+||+|-.++.+.+..+++|++.|+..-.||++-+||++.|+||+.+|+|.|+.++..||.++++.||..||.+++.
T Consensus 443 vFslliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~ll~~LP~klq~dlAi 522 (815)
T KOG0499|consen 443 VFSLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESDLLKTLPTKLQLDLAI 522 (815)
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccHHHHHHhcchhheeeeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCccc
Q 007183 435 ELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSK 514 (614)
Q Consensus 435 ~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~ 514 (614)
.++...+.++.+|++|+.+.+.+++.+++.+.|.|||+||++||++.+||+|..|+|+|..- .++...
T Consensus 523 ~V~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlGG----p~~~~V-------- 590 (815)
T KOG0499|consen 523 DVNYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLGG----PDGTKV-------- 590 (815)
T ss_pred EeehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEecC----CCCCEE--------
Confidence 99999999999999999999999999999999999999999999999999999999999983 333322
Q ss_pred ccccceecCCCCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHHhHhhhc
Q 007183 515 FISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTEFN 584 (614)
Q Consensus 515 ~~~~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~~~r~~ 584 (614)
+.+|.+|++|||++++. .....+|||+|+|.++|.+++|+++|+.+++.. |+-|+.+|..
T Consensus 591 ----l~tL~~GsVFGEISLLa------igG~nRRTAnV~a~Gf~nLfvL~KkdLneil~~YP~sq~iLrkk 651 (815)
T KOG0499|consen 591 ----LVTLKAGSVFGEISLLA------IGGGNRRTANVVAHGFANLFVLDKKDLNEILVHYPDSQRILRKK 651 (815)
T ss_pred ----EEEecccceeeeeeeee------ecCCCccchhhhhcccceeeEecHhHHHHHHHhCccHHHHHHHH
Confidence 89999999999999972 333447999999999999999999999999999 8877777744
No 6
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.50 E-value=1.6e-13 Score=143.46 Aligned_cols=187 Identities=14% Similarity=0.175 Sum_probs=111.5
Q ss_pred chhhhHHHHHHHHHHHhhhhhceeeEeecccCCceeecCHHHHHHHHHhhhc--ccccccccHhHHHHHHhcCC--ccc-
Q 007183 105 VTATGLRSLFDFLYIFYITPQLLADLVASVNAKHEANNSLKSLMKFWLGSLF--VDLPAVFPLPQLVILSIIPR--MSG- 179 (614)
Q Consensus 105 ~~~~~~~~~~d~~f~~DI~l~F~t~y~~~~~~~g~~V~d~~~Ia~~Ylk~~F--~Dlls~lP~~~l~~~~~~~~--~~~- 179 (614)
..+.+++.++-+.|-+..+++|..+= =..+++|+-. +|++|++||.+=+....... .+.
T Consensus 240 p~l~~vE~vCi~WFT~E~llR~~~~P----------------~k~~F~k~pLNIIDllAIlPFYielll~~~~~~~~~~l 303 (477)
T KOG3713|consen 240 PILTYVETVCIAWFTFEYLLRFLVAP----------------NKLEFFKSPLNIIDLLAILPFYLELLLTLFGGESLKEL 303 (477)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHcCc----------------hHHHHHhCcchHHHHHHHHHHHHHHHHHHhccchHHHH
Confidence 35789999999999999999997431 1357899988 99999999976543332221 111
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHhhhhcccccch--hh--hHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhHHHHHhc
Q 007183 180 LKILSGMMLLKYSVLIQFVLRMIRIYPWTLGKLG--EA--TWAIAAFNLLLYV-LASHVFGALWYFSAIERQTECWKKAC 254 (614)
Q Consensus 180 ~~~l~~~rllrl~rl~~~l~rl~r~~~l~~~~~~--~~--~~~~~~~~Li~~~-l~~H~~aC~w~~i~~~~~~~~~~~~c 254 (614)
......+|+||++|++ |++++-+...|... .+ +-..-+..|++|+ +-+-++|-+-|++=..
T Consensus 304 ~~~~~vvrvlR~lRI~----RI~KLaRhS~GLr~lg~Tlr~S~~ElglLllfL~~GI~iFStlvY~~Ek~---------- 369 (477)
T KOG3713|consen 304 ENAGLVVRVLRVLRIL----RIFKLARHSTGLRTLGLTLRRSYRELGLLLLFLAVGIVIFSTLVYFAEKD---------- 369 (477)
T ss_pred hhhhhhHHHHHHHHHH----HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----------
Confidence 0111223333332222 22222222223211 01 1111122233333 2245555555553210
Q ss_pred cccCCCCCCcccccCCCCCCcccccccCCCCCCCCCCcccchhhhhhccCcccCCChhhHHHHHHHHhhhhcccccCCCc
Q 007183 255 LFNNTGCTRGSFDCYDSLGNYEFLNEFCPTKPQNTTILDFGIFQHALQSGIVEVPDFPQKFLHCFRWGLRNLSCFGQNLQ 334 (614)
Q Consensus 255 ~~~~~~c~~~~l~~~~~~~~~sWi~~~~~~~~~~~~~~~~~~y~~~l~~~~~~~~~~~~~Yl~SlYwa~~TmtTvGyGdi 334 (614)
. .+++ +..--.+++||++|||||||||+
T Consensus 370 ------------------~--------------~~~~--------------------FtSIPa~~WWaiVTMTTVGYGDm 397 (477)
T KOG3713|consen 370 ------------------E--------------PDTK--------------------FTSIPAGFWWAVVTMTTVGYGDM 397 (477)
T ss_pred ------------------C--------------CCCC--------------------CccccchhheeeEEEeeecccCc
Confidence 0 0000 11223589999999999999999
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 007183 335 TSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATR 373 (614)
Q Consensus 335 ~p~~~~E~i~~i~~ml~G~~~fa~iig~i~~il~~~~~~ 373 (614)
+|.|...++++..+.+.|+++.|+-|..|-+=+......
T Consensus 398 ~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~ 436 (477)
T KOG3713|consen 398 VPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYSE 436 (477)
T ss_pred cccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHH
Confidence 999999999999999999999998777666655544433
No 7
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.34 E-value=1.1e-11 Score=123.82 Aligned_cols=121 Identities=15% Similarity=0.126 Sum_probs=105.1
Q ss_pred HHHhccCcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccc
Q 007183 438 LDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFIS 517 (614)
Q Consensus 438 ~~~l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~ 517 (614)
.+.++.+++|..++++.++.+....+.+.|.+|++|+++|+.++.+|+|.+|.|+++.. .+|++..
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~---~~~~~~~----------- 71 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSAS---SQDRETT----------- 71 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEc---CCCceEE-----------
Confidence 45788999999999999999999999999999999999999999999999999999974 2344433
Q ss_pred cceecCCCCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHHhHhh
Q 007183 518 RKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 582 (614)
Q Consensus 518 ~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~~~r 582 (614)
+..+++|++||+.+++. ..++.++++|.++|+++.+++++|.+++.+ |.+...+.
T Consensus 72 -i~~~~~g~~~g~~~~~~---------~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~ 127 (236)
T PRK09392 72 -LAILRPVSTFILAAVVL---------DAPYLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVV 127 (236)
T ss_pred -EEEeCCCchhhhHHHhC---------CCCCceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHH
Confidence 78999999999997752 124778999999999999999999999999 77776543
No 8
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.33 E-value=1.4e-11 Score=107.05 Aligned_cols=113 Identities=24% Similarity=0.391 Sum_probs=96.6
Q ss_pred ccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCC
Q 007183 446 EFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADG 525 (614)
Q Consensus 446 ~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G 525 (614)
+|+.++++.+..++..++.+.+.+|+.|+.+|+..+.+|+|.+|.+.++..+ .+|.+.. +..+.+|
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~--~~g~~~~------------~~~~~~g 66 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLD--EDGREQI------------VGFLGPG 66 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEEC--CCCcEEE------------EEecCCc
Confidence 4788999999999999999999999999999999999999999999999854 3443332 7889999
Q ss_pred CeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHHhHh
Q 007183 526 DFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASST 581 (614)
Q Consensus 526 ~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~~~ 581 (614)
++||+..++. ..++..+++|.+.|.++.+++++|.+++.+ |.+...+
T Consensus 67 ~~~g~~~~~~---------~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 114 (115)
T cd00038 67 DLFGELALLG---------NGPRSATVRALTDSELLVLPRSDFRRLLQEYPELARRL 114 (115)
T ss_pred cCcChHHHhc---------CCCCCceEEEcCceEEEEEeHHHHHHHHHHCcHhHHhc
Confidence 9999997751 114677899999999999999999999988 7776543
No 9
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.31 E-value=2e-12 Score=134.77 Aligned_cols=115 Identities=22% Similarity=0.393 Sum_probs=105.7
Q ss_pred HHHHHHHHHhccCcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccC
Q 007183 432 IKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRD 511 (614)
Q Consensus 432 i~~~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~ 511 (614)
=..++-++.+.+..|.++++.+.+++++..|.+..|.+|..|++|||+++++|.+.+|+++|.. .|..
T Consensus 147 ~~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~-----~g~l------- 214 (732)
T KOG0614|consen 147 GAKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSR-----EGKL------- 214 (732)
T ss_pred cHHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEee-----CCee-------
Confidence 3456677888999999999999999999999999999999999999999999999999999988 3322
Q ss_pred cccccccceecCCCCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh
Q 007183 512 NSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE 574 (614)
Q Consensus 512 n~~~~~~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~ 574 (614)
+..+++|..|||.++++++ +|+|+|+|+++|.+|+|.|+.|+.++..
T Consensus 215 -------l~~m~~gtvFGELAILync---------tRtAsV~alt~~~lWaidR~vFq~IM~~ 261 (732)
T KOG0614|consen 215 -------LGKMGAGTVFGELAILYNC---------TRTASVRALTDVRLWAIDREVFQAIMMR 261 (732)
T ss_pred -------eeccCCchhhhHHHHHhCC---------cchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 7899999999999999866 4999999999999999999999999988
No 10
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.30 E-value=3.8e-12 Score=122.61 Aligned_cols=190 Identities=19% Similarity=0.209 Sum_probs=111.6
Q ss_pred hHHHHHHHHHHHhhhhhceeeEeecccCCceeecCHHHHHHHHHhhh-c-ccccccccHhHHHHHHhcCCccchhHHHHh
Q 007183 109 GLRSLFDFLYIFYITPQLLADLVASVNAKHEANNSLKSLMKFWLGSL-F-VDLPAVFPLPQLVILSIIPRMSGLKILSGM 186 (614)
Q Consensus 109 ~~~~~~d~~f~~DI~l~F~t~y~~~~~~~g~~V~d~~~Ia~~Ylk~~-F-~Dlls~lP~~~l~~~~~~~~~~~~~~l~~~ 186 (614)
+++.+++++|.+|+++++++... . +++|++++ . +|+++++|..........+..+.....+..
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~-----~----------~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGF-----K----------RRRYFRSWWNWFDFISVIPSIVSVILRSYGSASAQSLLRIF 65 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCC-----G-----------GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--HHCHCHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHhcc-----H----------HHHHhcChhhcccccccccccccccccccccccccceEEEE
Confidence 47889999999999999985432 1 77899976 5 999999998554432211110001233444
Q ss_pred hHHHHHHHHHHHHHHHhhhhcccccch-hhhHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhhHHHHHhccccCCCCCCc
Q 007183 187 MLLKYSVLIQFVLRMIRIYPWTLGKLG-EATWAIAAFNLL-LYVLASHVFGALWYFSAIERQTECWKKACLFNNTGCTRG 264 (614)
Q Consensus 187 rllrl~rl~~~l~rl~r~~~l~~~~~~-~~~~~~~~~~Li-~~~l~~H~~aC~w~~i~~~~~~~~~~~~c~~~~~~c~~~ 264 (614)
|++|+.|+++ +.+..+....... ...-...+.+++ .++++.|.+||+++.+.....+.|+ .
T Consensus 66 ~~l~~~R~l~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~-----------~-- 128 (200)
T PF00520_consen 66 RLLRLLRLLR----LLRRFRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCC-----------D-- 128 (200)
T ss_dssp HHHHHHHHHH----HHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS------------------
T ss_pred Eeeccccccc----cccccccccccccccccccccccccccccccccccccchhheeccccccccc-----------c--
Confidence 4444444333 2222221000000 001111233333 3446789999999988732111100 0
Q ss_pred ccccCCCCCCcccccccCCCCCCCCCCcccchhhhhhccCcccCCChhhHHHHHHHHhhhhcccccCCCccCC-----Ch
Q 007183 265 SFDCYDSLGNYEFLNEFCPTKPQNTTILDFGIFQHALQSGIVEVPDFPQKFLHCFRWGLRNLSCFGQNLQTSS-----NA 339 (614)
Q Consensus 265 ~l~~~~~~~~~sWi~~~~~~~~~~~~~~~~~~y~~~l~~~~~~~~~~~~~Yl~SlYwa~~TmtTvGyGdi~p~-----~~ 339 (614)
..+-.. + . ....+..+.|..|+||+++++|+.|+||+.+. +.
T Consensus 129 ----------~~~~~~--------~--~-------------~~~~~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~ 175 (200)
T PF00520_consen 129 ----------PTWDSE--------N--D-------------IYGYENFDSFGESLYWLFQTMTGEGWGDVMPSCMSARSW 175 (200)
T ss_dssp ------------SS---------------------------SSTHHHHSSHHHHHHHHHHHHTTTTCCCCHHHHHHTTST
T ss_pred ----------cccccc--------c--c-------------cccccccccccccccccccccccCCccccccccccccch
Confidence 000000 0 0 11335567899999999999999999999887 88
Q ss_pred hhHHHH-HHHHHHHHHHHHHHHHHH
Q 007183 340 WENFFV-ILVTISGLVLMLFLIGNI 363 (614)
Q Consensus 340 ~E~i~~-i~~ml~G~~~fa~iig~i 363 (614)
.+.++. ++..+.+.++++.++|.|
T Consensus 176 ~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 176 LAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 999999 666666668889998875
No 11
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.27 E-value=7.4e-11 Score=115.62 Aligned_cols=112 Identities=15% Similarity=0.188 Sum_probs=95.4
Q ss_pred ccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCe
Q 007183 448 KTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDF 527 (614)
Q Consensus 448 ~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~ 527 (614)
+.+|++.++.++..++.+.|.+|++|+.+|+.++.+|||.+|.++++..+ .+|.+.. +..+++|++
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~--~~g~~~~------------~~~~~~g~~ 71 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKD--EEGKEMI------------LSYLNQGDF 71 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEEC--CCCCEEE------------EEEcCCCCE
Confidence 45899999999999999999999999999999999999999999999743 3455443 788999999
Q ss_pred eechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHHhHh
Q 007183 528 WGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASST 581 (614)
Q Consensus 528 FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~~~ 581 (614)
||+.+++. ..++++++++|.++|+++.+++++|.+++.+ |.+...+
T Consensus 72 ~g~~~~~~--------~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~ 118 (211)
T PRK11753 72 IGELGLFE--------EGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMAL 118 (211)
T ss_pred Eeehhhcc--------CCCCceEEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHH
Confidence 99997752 1124677899999999999999999999999 7776543
No 12
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.24 E-value=1.7e-11 Score=122.91 Aligned_cols=109 Identities=19% Similarity=0.296 Sum_probs=99.1
Q ss_pred HHHhccCcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccc
Q 007183 438 LDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFIS 517 (614)
Q Consensus 438 ~~~l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~ 517 (614)
.+.+++.-+|++++++.+.++...|.++.+..|+.|++||+.++.+|+|.+|+++|+. ++..
T Consensus 121 ~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv-----~~~~------------- 182 (368)
T KOG1113|consen 121 EEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYV-----NGTY------------- 182 (368)
T ss_pred HHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEE-----CCeE-------------
Confidence 4566778899999999999999999999999999999999999999999999999998 4332
Q ss_pred cceecCCCCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh
Q 007183 518 RKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE 574 (614)
Q Consensus 518 ~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~ 574 (614)
+..+++|..|||.+|+++ +||.+|+.|.+++.+|.|.+..|.+++-.
T Consensus 183 -v~~~~~g~sFGElALmyn---------~PRaATv~a~t~~klWgldr~SFrrIi~~ 229 (368)
T KOG1113|consen 183 -VTTYSPGGSFGELALMYN---------PPRAATVVAKSLKKLWGLDRTSFRRIIMK 229 (368)
T ss_pred -EeeeCCCCchhhhHhhhC---------CCcccceeeccccceEEEeeceeEEEeec
Confidence 789999999999999752 37999999999999999999999998776
No 13
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.23 E-value=4.9e-11 Score=99.78 Aligned_cols=90 Identities=22% Similarity=0.285 Sum_probs=75.8
Q ss_pred ceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeeechhhHhhhccCcCC
Q 007183 464 PAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLS 543 (614)
Q Consensus 464 ~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FGe~~ll~~l~~~~~~ 543 (614)
++.|.+|++|+++|+.++++|||.+|.+++...+ .++.... +..+++|++||+.+++...
T Consensus 1 ~~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~--~~~~~~~------------~~~~~~g~~~g~~~~~~~~------ 60 (91)
T PF00027_consen 1 EKTYKKGEVIYRQGDPCDHIYIILSGEVKVSSIN--EDGKEQI------------IFFLGPGDIFGEIELLTGK------ 60 (91)
T ss_dssp -EEESTTEEEEETTSBESEEEEEEESEEEEEEET--TTSEEEE------------EEEEETTEEESGHHHHHTS------
T ss_pred CeEECCCCEEEeCCCcCCEEEEEEECceEEEece--ecceeee------------ecceeeeccccceeecCCC------
Confidence 3679999999999999999999999999999953 3332222 6889999999999887421
Q ss_pred CCCCccceEEEcceEEEEEeCHhhHHHHhhh-HH
Q 007183 544 NIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQ 576 (614)
Q Consensus 544 ~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~ 576 (614)
++..+++|.++|+++.|++++|.+++++ |+
T Consensus 61 ---~~~~~~~a~~~~~~~~i~~~~~~~~~~~~p~ 91 (91)
T PF00027_consen 61 ---PSPFTVIALTDSEVLRIPREDFLQLLQQDPE 91 (91)
T ss_dssp ---BBSSEEEESSSEEEEEEEHHHHHHHHHHSHH
T ss_pred ---ccEEEEEEccCEEEEEEeHHHHHHHHHhCcC
Confidence 4778999999999999999999999987 53
No 14
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.23 E-value=1.6e-10 Score=100.93 Aligned_cols=112 Identities=25% Similarity=0.355 Sum_probs=94.0
Q ss_pred ccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCC
Q 007183 446 EFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADG 525 (614)
Q Consensus 446 ~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G 525 (614)
+|.+++++.++.++..++.+.|.+|++|+++|+..+++|||.+|.++++..+ .+|.... +..+++|
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~--~~g~~~~------------~~~~~~g 66 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVL--EDGREQI------------LGILGPG 66 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEEC--CCCceEE------------EEeecCC
Confidence 4788999999999999999999999999999999999999999999999853 3444433 7889999
Q ss_pred CeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHH
Q 007183 526 DFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVA 578 (614)
Q Consensus 526 ~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~ 578 (614)
++||+..++.. ...++..++.|.+.|+++.++.+++.+.+.. +.+.
T Consensus 67 ~~~g~~~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 113 (120)
T smart00100 67 DFFGELALLTN-------SRRAASATAVALELATLLRIDFRDFLQLLQENPQLL 113 (120)
T ss_pred ceechhhhccC-------CCcccceEEEEEeeEEEEccCHHHHHHHHHHhHHHH
Confidence 99999977511 1124667899999999999999999999888 4443
No 15
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.22 E-value=2.2e-11 Score=127.01 Aligned_cols=124 Identities=21% Similarity=0.353 Sum_probs=107.1
Q ss_pred HHHHHHHhccCcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcc
Q 007183 434 RELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNS 513 (614)
Q Consensus 434 ~~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~ 513 (614)
.+.+.++|+++|+|+++|++.+..++..|+...|..|++|+++|+.++..|+|.+|.|.+...++.+ +...
T Consensus 267 ~~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~-~q~~-------- 337 (732)
T KOG0614|consen 267 HEQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGS-TQPQ-------- 337 (732)
T ss_pred HHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCC-Cchh--------
Confidence 4567889999999999999999999999999999999999999999999999999999999854211 1111
Q ss_pred cccccceecCCCCeeechhhHhhhccCcCCCCCCccceEEEcce-EEEEEeCHhhHHHHhhh-HHHHh
Q 007183 514 KFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKN-VEAFGLMAHDLKHVFIE-HQVAS 579 (614)
Q Consensus 514 ~~~~~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~-~~l~~Ls~~df~~ll~~-~~l~~ 579 (614)
.+..++.|++|||-+++.. -.|+|++.|... ++++.|+++.|.+++.+ .++++
T Consensus 338 ----~lr~l~kGd~FGE~al~~e---------dvRtAniia~~~gv~cl~lDresF~~liG~l~~l~e 392 (732)
T KOG0614|consen 338 ----ELRTLNKGDYFGERALLGE---------DVRTANIIAQAPGVECLTLDRESFKKLIGDLEELKE 392 (732)
T ss_pred ----HHhhccccchhhHHHhhcc---------CccchhhhccCCCceEEEecHHHHHHhcccHHHhhh
Confidence 2789999999999998731 158999999987 99999999999999998 66664
No 16
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.16 E-value=2.1e-10 Score=94.06 Aligned_cols=55 Identities=13% Similarity=0.321 Sum_probs=49.4
Q ss_pred HHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007183 314 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQ 368 (614)
Q Consensus 314 ~Yl~SlYwa~~TmtTvGyGdi~p~~~~E~i~~i~~ml~G~~~fa~iig~i~~il~ 368 (614)
.|..|+||+++|+||+||||+.|.++.+++++++.+++|..++++.++.+++.+.
T Consensus 24 ~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 24 SFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp SHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678999999999999999999999999999999999999999999999999875
No 17
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.15 E-value=1.7e-10 Score=114.57 Aligned_cols=106 Identities=18% Similarity=0.226 Sum_probs=89.0
Q ss_pred HHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeeechh
Q 007183 453 EVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEEL 532 (614)
Q Consensus 453 ~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FGe~~ 532 (614)
-|..+|....+.+.|++|++|+.+||.++.+|||.+|.|+++..+ .+|.+.. +..+.+|++||+.+
T Consensus 22 ~~~~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~--~~G~e~~------------~~~~~~g~~~G~~~ 87 (226)
T PRK10402 22 CFSFDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATL--ANGKVSL------------IDFFAAPCFIGEIE 87 (226)
T ss_pred cCCHHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEEC--CCCCEee------------eeecCCCCeEEeeh
Confidence 344468888999999999999999999999999999999999864 4565543 78899999999997
Q ss_pred hHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHHhHh
Q 007183 533 VAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASST 581 (614)
Q Consensus 533 ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~~~ 581 (614)
++. ..+++++++|.++|+++.+++++|.+++.+ |.+...+
T Consensus 88 ~~~---------~~~~~~~~~A~~~~~i~~i~~~~~~~ll~~~p~~~~~~ 128 (226)
T PRK10402 88 LID---------KDHETKAVQAIEECWCLALPMKDCRPLLLNDALFLRKL 128 (226)
T ss_pred hhc---------CCCCCccEEEeccEEEEEEEHHHHHHHHhcCHHHHHHH
Confidence 652 125778999999999999999999999988 7666543
No 18
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.11 E-value=7.2e-10 Score=108.12 Aligned_cols=118 Identities=22% Similarity=0.272 Sum_probs=98.8
Q ss_pred ccCcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCccccccccee
Q 007183 442 KNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDH 521 (614)
Q Consensus 442 ~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~ 521 (614)
...+.|...++.....+....+.+.+++|++|+.+||.++.+|+|.+|.++++... .+|.+.. +..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~--~~G~~~~------------~~~ 68 (214)
T COG0664 3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANT--EDGREII------------LGF 68 (214)
T ss_pred ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEEC--CCCcEEE------------EEE
Confidence 34566666777888888889999999999999999999999999999999999964 4444433 778
Q ss_pred cCCCCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHHhHhh
Q 007183 522 LADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 582 (614)
Q Consensus 522 l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~~~r 582 (614)
+++|++||+.+++.. .+++++++|.++|+++.+++++|.+++.+ |.+...+.
T Consensus 69 ~~~g~~fg~~~l~~~---------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~ 121 (214)
T COG0664 69 LGPGDFFGELALLGG---------DPRSASAVALTDVEVLEIPRKDFLELLAESPKLALALL 121 (214)
T ss_pred ecCCchhhhHHHhcC---------CCccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHH
Confidence 999999999988631 15888999999999999999999999998 77765544
No 19
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.09 E-value=2.8e-11 Score=120.60 Aligned_cols=49 Identities=14% Similarity=0.254 Sum_probs=42.9
Q ss_pred HHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007183 317 HCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQI 365 (614)
Q Consensus 317 ~SlYwa~~TmtTvGyGdi~p~~~~E~i~~i~~ml~G~~~fa~iig~i~~ 365 (614)
.|+|||++|||||||||..|.|...+++..++.+.|++-.|.-+-.|.+
T Consensus 396 daFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIVs 444 (507)
T KOG1545|consen 396 DAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIVS 444 (507)
T ss_pred ccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEEe
Confidence 4899999999999999999999999999999999999887766554433
No 20
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.08 E-value=1.4e-09 Score=108.49 Aligned_cols=117 Identities=18% Similarity=0.179 Sum_probs=94.5
Q ss_pred hccCcccccccHHHHHHHhhhccc-eeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccc
Q 007183 441 LKNVKEFKTLDEEVLDALCDCVKP-AFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRK 519 (614)
Q Consensus 441 l~~i~~F~~~s~~~l~~L~~~l~~-~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~ 519 (614)
+++.+.|..++++.++.|....+. +.|.+||.|+.+||.++++|+|.+|.|+++..+ .+|.+.. +
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~--~~G~e~i------------~ 80 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTIT--EQGDEQI------------T 80 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEEC--CCCCEEE------------E
Confidence 344445557999999999988865 679999999999999999999999999999864 4555543 6
Q ss_pred eecCCCCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHHhHh
Q 007183 520 DHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASST 581 (614)
Q Consensus 520 ~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~~~ 581 (614)
..+.+|++||+.+++. + ....+++|.++|+++.+++++|.+++.+ |.+...+
T Consensus 81 ~~~~~gd~~g~~~~~~--------~--~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~ 133 (235)
T PRK11161 81 GFHLAGDLVGFDAIGS--------G--QHPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQI 133 (235)
T ss_pred EeccCCceeccccccC--------C--CCcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHH
Confidence 7789999999875421 0 2345899999999999999999999998 7766543
No 21
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.06 E-value=1.3e-09 Score=117.94 Aligned_cols=111 Identities=19% Similarity=0.252 Sum_probs=95.9
Q ss_pred HHHhccCcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccc
Q 007183 438 LDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFIS 517 (614)
Q Consensus 438 ~~~l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~ 517 (614)
.+.++++++|++++++.++.++..++.+.|.+||+|+++||.++.+|+|.+|.|+++..+ .+| +..
T Consensus 7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~--~~g-e~~----------- 72 (413)
T PLN02868 7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPA--EEE-SRP----------- 72 (413)
T ss_pred HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEEC--CCC-cEE-----------
Confidence 456789999999999999999999999999999999999999999999999999998853 333 322
Q ss_pred cceecCCCCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh
Q 007183 518 RKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE 574 (614)
Q Consensus 518 ~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~ 574 (614)
+..+++|++||+. + . ..++.++++|.++|+++.|++++|..+...
T Consensus 73 -l~~l~~Gd~fG~~-l----~------~~~~~~~~~A~~d~~v~~ip~~~~~~~~~~ 117 (413)
T PLN02868 73 -EFLLKRYDYFGYG-L----S------GSVHSADVVAVSELTCLVLPHEHCHLLSPK 117 (413)
T ss_pred -EEEeCCCCEeehh-h----C------CCCcccEEEECCCEEEEEEcHHHHhhhccc
Confidence 7888999999975 2 1 124788999999999999999999888665
No 22
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.04 E-value=1.9e-09 Score=114.47 Aligned_cols=131 Identities=23% Similarity=0.275 Sum_probs=111.5
Q ss_pred HHHhccCcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccc
Q 007183 438 LDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFIS 517 (614)
Q Consensus 438 ~~~l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~ 517 (614)
.+++.+.|.|..++++.+.+|...+....|.+||.|...|.+..+||+|.+|.|++.. .+| +.
T Consensus 6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~----~~g-~v------------ 68 (610)
T COG2905 6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRS----DGG-EV------------ 68 (610)
T ss_pred HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEc----CCC-ee------------
Confidence 4678899999999999999999999999999999999999999999999999999998 344 32
Q ss_pred cceecCCCCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHHhHhhhcccchhhHHHHHH
Q 007183 518 RKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTEFNSNYSVKDAARII 596 (614)
Q Consensus 518 ~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~~~r~~~~~~~~~~~~~~ 596 (614)
+..+..|+.||-.+++.... ....+.|.+++-+|.|+++.|.+++.+ |.+++.|. +.||.|+-
T Consensus 69 -~~~~~~gdlFg~~~l~~~~~---------~~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~ff~------~~~akR~~ 132 (610)
T COG2905 69 -LDRLAAGDLFGFSSLFTELN---------KQRYMAAEEDSLCYLLPKSVFMQLMEENPEFADFFL------RSLAKRLR 132 (610)
T ss_pred -eeeeccCccccchhhcccCC---------CcceeEeeccceEEecCHHHHHHHHHhCcHHHHHHH------HHHHHHHH
Confidence 78999999999998874221 233678888999999999999999999 99998887 34666666
Q ss_pred HHHHH
Q 007183 597 QLAWR 601 (614)
Q Consensus 597 ~~~~~ 601 (614)
++|=|
T Consensus 133 ~~~~~ 137 (610)
T COG2905 133 DIADR 137 (610)
T ss_pred HHHHH
Confidence 66644
No 23
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=98.90 E-value=5.2e-09 Score=110.17 Aligned_cols=89 Identities=13% Similarity=0.174 Sum_probs=68.7
Q ss_pred ChhhHHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhh
Q 007183 310 DFPQKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMP 389 (614)
Q Consensus 310 ~~~~~Yl~SlYwa~~TmtTvGyGdi~p~~~~E~i~~i~~ml~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~i~~ym~ 389 (614)
+-+..|..|++|++.|||||||||.+|+|...++++.+..++|+.+||.--|.+++=+.-+-+ ++.+ =++|-+
T Consensus 265 ~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKVQ--eq~R-----QKHf~r 337 (654)
T KOG1419|consen 265 DEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKVQ--EQHR-----QKHFNR 337 (654)
T ss_pred ccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhhH--HHHH-----HHHHHh
Confidence 456789999999999999999999999999999999999999999999888777764432111 1111 134556
Q ss_pred cCCCCHHHHHHHHHHH
Q 007183 390 IQKLSRSVQQQLKIYQ 405 (614)
Q Consensus 390 ~~~ip~~L~~rV~~y~ 405 (614)
+++.-.+|-+-.-+||
T Consensus 338 rr~pAA~LIQc~WR~y 353 (654)
T KOG1419|consen 338 RRNPAASLIQCAWRYY 353 (654)
T ss_pred hcchHHHHHHHHHHHH
Confidence 7777777777666665
No 24
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=98.85 E-value=1.4e-08 Score=101.11 Aligned_cols=100 Identities=17% Similarity=0.134 Sum_probs=82.2
Q ss_pred HHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeeechhhHhh
Q 007183 457 ALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWV 536 (614)
Q Consensus 457 ~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FGe~~ll~~ 536 (614)
.+....+.+.|.+|++|+.+||.++.+|||.+|.|+++..+ .+|++.. +..+.+|++||+..
T Consensus 33 ~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~--~~G~e~i------------~~~~~~Gd~fG~~~---- 94 (230)
T PRK09391 33 HAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLL--SDGRRQI------------GAFHLPGDVFGLES---- 94 (230)
T ss_pred cccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEEC--CCCcEEE------------EEEecCCceecccC----
Confidence 34566778999999999999999999999999999999854 4555543 67889999999651
Q ss_pred hccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHHhHhh
Q 007183 537 LRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 582 (614)
Q Consensus 537 l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~~~r 582 (614)
..++..+++|+++|+++.+++++|.+++.. |.+...+.
T Consensus 95 --------~~~~~~~~~A~~ds~v~~i~~~~f~~l~~~~p~l~~~l~ 133 (230)
T PRK09391 95 --------GSTHRFTAEAIVDTTVRLIKRRSLEQAAATDVDVARALL 133 (230)
T ss_pred --------CCcCCeEEEEcCceEEEEEEHHHHHHHHhhChHHHHHHH
Confidence 013668999999999999999999999998 77765443
No 25
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=98.82 E-value=2.9e-08 Score=95.70 Aligned_cols=92 Identities=15% Similarity=0.156 Sum_probs=75.4
Q ss_pred CcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeeechhhHhhhccCcCCCCCCcc
Q 007183 470 HTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMST 549 (614)
Q Consensus 470 ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~ 549 (614)
|+.|+++||..+.+|+|.+|.|+++..+ .+|.+.. +..+++|++||+.+++... ..++.
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~--~~G~e~~------------l~~~~~g~~~G~~~~~~~~-------~~~~~ 59 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVY--ESGEEIT------------VALLRENSVFGVLSLITGH-------RSDRF 59 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeC--CCCcEee------------eEEccCCCEeeeeeeccCC-------CCccc
Confidence 7899999999999999999999999854 4555543 7899999999998775211 11345
Q ss_pred ceEEEcceEEEEEeCHhhHHHHhhh-HHHHhHhh
Q 007183 550 RSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 582 (614)
Q Consensus 550 ~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~~~r 582 (614)
.+++|.++|+++.+++++|.+++.+ |.+...+.
T Consensus 60 ~~~~A~~~~~v~~i~~~~~~~l~~~~p~l~~~~~ 93 (193)
T TIGR03697 60 YHAVAFTRVELLAVPIEQVEKAIEEDPDLSMLLL 93 (193)
T ss_pred eEEEEecceEEEEeeHHHHHHHHHHChHHHHHHH
Confidence 6899999999999999999999999 77776544
No 26
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.82 E-value=9.7e-09 Score=103.33 Aligned_cols=115 Identities=17% Similarity=0.254 Sum_probs=102.8
Q ss_pred HHHHHHHHhccCcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCc
Q 007183 433 KRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDN 512 (614)
Q Consensus 433 ~~~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n 512 (614)
..-+|.+.|+++|+++.+....-..++..+.++.|.+|+.|..+|+.++.+|+|.+|+|.+... .++ ..
T Consensus 234 krkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~----~~~-v~------ 302 (368)
T KOG1113|consen 234 KRKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKK----RDG-VE------ 302 (368)
T ss_pred hhhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhc----cCC-eE------
Confidence 3567888999999999999999999999999999999999999999999999999999999872 222 22
Q ss_pred ccccccceecCCCCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh
Q 007183 513 SKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE 574 (614)
Q Consensus 513 ~~~~~~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~ 574 (614)
+ .++.|++|||.+++.+. +|.++|.|.+...+..+.++.|+.++.-
T Consensus 303 ------v-kl~~~dyfge~al~~~~---------pr~Atv~a~~~~kc~~~dk~~ferllgp 348 (368)
T KOG1113|consen 303 ------V-KLKKGDYFGELALLKNL---------PRAATVVAKGRLKCAKLDKPRFERLLGP 348 (368)
T ss_pred ------E-EechhhhcchHHHHhhc---------hhhceeeccCCceeeeeChHHHHHHhhH
Confidence 4 89999999999998532 5899999999999999999999999987
No 27
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.79 E-value=1.2e-08 Score=107.22 Aligned_cols=127 Identities=12% Similarity=0.203 Sum_probs=91.0
Q ss_pred hHHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhhcCC
Q 007183 313 QKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQK 392 (614)
Q Consensus 313 ~~Yl~SlYwa~~TmtTvGyGdi~p~~~~E~i~~i~~ml~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~i~~ym~~~~ 392 (614)
..|..|+|+-++||+||||||+...|...+.|.+|..+.|..+||--+..|..++.+-++-.-+|+..- .+++
T Consensus 287 ltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~kyggeyk~eh-------gkkh 359 (1103)
T KOG1420|consen 287 LTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGEYKAEH-------GKKH 359 (1103)
T ss_pred chhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCceeehhc-------CCee
Confidence 468999999999999999999999999999999999999999999999999999988665444443210 1111
Q ss_pred C--CH-HHHHHHHHHHHH-HHhcCCCCC-hhHHhhcCChHHHHHHHHHHHHHHhccCccccc
Q 007183 393 L--SR-SVQQQLKIYQRY-IWRKPDTID-VESSLSILPKELRRNIKRELCLDLLKNVKEFKT 449 (614)
Q Consensus 393 i--p~-~L~~rV~~y~~~-~~~~~~~~~-~~~il~~Lp~~Lr~ei~~~~~~~~l~~i~~F~~ 449 (614)
| -. -..+.|..|+.- ..+....+| |--+|...||+|--| .+++..+.++.+|++
T Consensus 360 ivvcghityesvshflkdflhedrddvdvevvflhr~~pdlele---glfkrhft~veffqg 418 (1103)
T KOG1420|consen 360 IVVCGHITYESVSHFLKDFLHEDRDDVDVEVVFLHRISPDLELE---GLFKRHFTQVEFFQG 418 (1103)
T ss_pred EEEecceeHHHHHHHHHHHhhccccccceEEEEEecCCCCcchH---HHHhhheeeEEEecc
Confidence 1 00 012233333332 333334455 344688999998754 567788889999987
No 28
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=98.73 E-value=3.9e-08 Score=95.66 Aligned_cols=84 Identities=20% Similarity=0.218 Sum_probs=70.1
Q ss_pred hccceeecCCcEEEecCC--ccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeeechhhHhhhc
Q 007183 461 CVKPAFYFKHTHIVLEGD--PIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLR 538 (614)
Q Consensus 461 ~l~~~~y~~ge~I~~~G~--~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FGe~~ll~~l~ 538 (614)
..+.+.|++|++|+++|| .++.+|+|.+|.|+++..+ .+|.+.. +..+.+|++||+.+++ .
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~--~~G~e~~------------l~~~~~Gd~~G~~~~~---~ 67 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVD--DEGNALT------------LRYVRPGEYFGEEALA---G 67 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEEC--CCCCEEE------------EEEecCCCeechHHhc---C
Confidence 457788999999999999 7799999999999999864 5666544 7888999999997543 1
Q ss_pred cCcCCCCCCccceEEEcceEEEEEeCHhhH
Q 007183 539 DRSLSNIPMSTRSVQALKNVEAFGLMAHDL 568 (614)
Q Consensus 539 ~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df 568 (614)
.+++.++.|.++|+++.+++++|
T Consensus 68 -------~~~~~~~~A~~~~~v~~i~~~~~ 90 (202)
T PRK13918 68 -------AERAYFAEAVTDSRIDVLNPALM 90 (202)
T ss_pred -------CCCCceEEEcCceEEEEEEHHHc
Confidence 14677899999999999998776
No 29
>PRK10537 voltage-gated potassium channel; Provisional
Probab=98.34 E-value=1.8e-05 Score=84.57 Aligned_cols=54 Identities=19% Similarity=0.215 Sum_probs=49.9
Q ss_pred HHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007183 314 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYL 367 (614)
Q Consensus 314 ~Yl~SlYwa~~TmtTvGyGdi~p~~~~E~i~~i~~ml~G~~~fa~iig~i~~il 367 (614)
.+..|+||++.|+|||||||+.|.+...++++++++++|+.+|++.++.+...+
T Consensus 168 s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 168 SLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred CHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356799999999999999999999999999999999999999999999887644
No 30
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=98.21 E-value=4.5e-08 Score=98.78 Aligned_cols=54 Identities=13% Similarity=0.303 Sum_probs=46.8
Q ss_pred HHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHh
Q 007183 316 LHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLF----LIGNIQIYLQT 369 (614)
Q Consensus 316 l~SlYwa~~TmtTvGyGdi~p~~~~E~i~~i~~ml~G~~~fa~----iig~i~~il~~ 369 (614)
-.+||+.++||||.||||.+|.|....+|..++.+.|+++.|. ++.+.+.|-.+
T Consensus 358 PaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIYHQ 415 (632)
T KOG4390|consen 358 PAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYHQ 415 (632)
T ss_pred cHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechhHHHhh
Confidence 4589999999999999999999999999999999999998875 55666666544
No 31
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=97.90 E-value=0.00033 Score=73.33 Aligned_cols=91 Identities=13% Similarity=0.120 Sum_probs=71.8
Q ss_pred hhhHHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhhc
Q 007183 311 FPQKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPI 390 (614)
Q Consensus 311 ~~~~Yl~SlYwa~~TmtTvGyGdi~p~~~~E~i~~i~~ml~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~i~~ym~~ 390 (614)
....|+.|++....|..++||||+.|.|...+.++++.-++|+++-|.+++-++.=+. ..+--+.+++||-+
T Consensus 284 ~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKLe--------Lt~aEKhVhNFMmD 355 (489)
T KOG3684|consen 284 VTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKLE--------LTKAEKHVHNFMMD 355 (489)
T ss_pred hHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Confidence 4567999999999999999999999999999999999999999999999998886553 33334457777777
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 007183 391 QKLSRSVQQQLKIYQRYIW 409 (614)
Q Consensus 391 ~~ip~~L~~rV~~y~~~~~ 409 (614)
.++-+++++-..+-++..|
T Consensus 356 tqLTk~~KnAAA~VLqeTW 374 (489)
T KOG3684|consen 356 TQLTKEHKNAAANVLQETW 374 (489)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7766666555444444444
No 32
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.77 E-value=0.00021 Score=74.55 Aligned_cols=60 Identities=18% Similarity=0.362 Sum_probs=48.3
Q ss_pred hHHHHHHHHhhhhcccccCCC--ccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 007183 313 QKFLHCFRWGLRNLSCFGQNL--QTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKAT 372 (614)
Q Consensus 313 ~~Yl~SlYwa~~TmtTvGyGd--i~p~~~~E~i~~i~~ml~G~~~fa~iig~i~~il~~~~~ 372 (614)
..+..+|+||+.|+||+|||. ++|....-.+++++=+++|.++.|+++|-+-.=++.-.+
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP~~ 144 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSRPKK 144 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 457889999999999999999 678778888888899999999999999998887766443
No 33
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.58 E-value=7.4e-05 Score=81.01 Aligned_cols=58 Identities=19% Similarity=0.397 Sum_probs=53.7
Q ss_pred HHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007183 314 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKA 371 (614)
Q Consensus 314 ~Yl~SlYwa~~TmtTvGyGdi~p~~~~E~i~~i~~ml~G~~~fa~iig~i~~il~~~~ 371 (614)
-+..|+|++.+++||+|||+++|.|...++++|+..++|.-++..+++.++..+...-
T Consensus 115 ~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~ 172 (433)
T KOG1418|consen 115 SFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSL 172 (433)
T ss_pred ecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3567999999999999999999999999999999999999999999999999887643
No 34
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.31 E-value=0.00021 Score=79.93 Aligned_cols=103 Identities=16% Similarity=0.146 Sum_probs=82.7
Q ss_pred HHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeeechh
Q 007183 453 EVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEEL 532 (614)
Q Consensus 453 ~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FGe~~ 532 (614)
.++..+=..+.-....||+.++++||..|++|+|.+|.++.... ..+++. ..+..++.||.+|+..
T Consensus 499 p~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~---~~~~k~-----------~i~~EygrGd~iG~~E 564 (1158)
T KOG2968|consen 499 PFLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIR---QSGGKK-----------EIVGEYGRGDLIGEVE 564 (1158)
T ss_pred HHHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhh---ccCccc-----------hhhhhccCcceeehhH
Confidence 35555556667788999999999999999999999999987773 233332 1278999999999998
Q ss_pred hHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHH
Q 007183 533 VAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVA 578 (614)
Q Consensus 533 ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~ 578 (614)
.+.. .+|..|+.|+.++|+.+|+..-|..+... |++-
T Consensus 565 ~lt~---------~~R~tTv~AvRdSelariPe~l~~~ik~ryP~v~ 602 (1158)
T KOG2968|consen 565 MLTK---------QPRATTVMAVRDSELARIPEGLLNFIKLRYPQVV 602 (1158)
T ss_pred Hhhc---------CCccceEEEEeehhhhhccHHHHHHHHHhccHHH
Confidence 7642 25888999999999999999999888777 6554
No 35
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=96.80 E-value=0.031 Score=53.85 Aligned_cols=94 Identities=7% Similarity=-0.036 Sum_probs=70.5
Q ss_pred HHHHHhhhccceeecCCcEE-EecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeeechh
Q 007183 454 VLDALCDCVKPAFYFKHTHI-VLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEEL 532 (614)
Q Consensus 454 ~l~~L~~~l~~~~y~~ge~I-~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FGe~~ 532 (614)
..+.+...-++..+.+|..+ +.+....+..+++.+|.|.+.. .++ .. +.+..+...||-..
T Consensus 14 L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsirr----~d~-ll-------------~~t~~aP~IlGl~~ 75 (207)
T PRK11832 14 LDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRR----EEN-VL-------------IGITQAPYIMGLAD 75 (207)
T ss_pred HHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEEe----cCC-eE-------------EEeccCCeEeeccc
Confidence 45566677778889999997 5444444679999999999954 343 21 67778888999864
Q ss_pred hHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh
Q 007183 533 VAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE 574 (614)
Q Consensus 533 ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~ 574 (614)
.+. + .......+|.++|+++.+++++|.+++++
T Consensus 76 ~~~---~------~~~~~~l~ae~~c~~~~i~~~~~~~iie~ 108 (207)
T PRK11832 76 GLM---K------NDIPYKLISEGNCTGYHLPAKQTITLIEQ 108 (207)
T ss_pred ccC---C------CCceEEEEEcCccEEEEeeHHHHHHHHHH
Confidence 331 0 12346799999999999999999999998
No 36
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=96.58 E-value=0.016 Score=65.53 Aligned_cols=118 Identities=13% Similarity=0.118 Sum_probs=86.2
Q ss_pred HHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeeech-hhHh
Q 007183 457 ALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEE-LVAW 535 (614)
Q Consensus 457 ~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FGe~-~ll~ 535 (614)
+++.+++...+..||+|++.|+..+.+|.+.+|..+++..+ .+|+... +..+.+|+.|-.. +++-
T Consensus 110 ~L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~--~~g~~~l------------lk~V~~G~~~tSllSiLd 175 (1158)
T KOG2968|consen 110 ELDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRN--GDGKEYL------------LKTVPPGGSFTSLLSILD 175 (1158)
T ss_pred eechhhhhhcccCCceeccCCCCCceEEEEeccceEEEecC--CCCceee------------EeeccCCCchHhHHHHHH
Confidence 35588888999999999999999999999999999999842 2333322 7888999766543 3432
Q ss_pred hhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHHhHhhhcccchhhHHHHHHHHHHHHHHHh
Q 007183 536 VLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTEFNSNYSVKDAARIIQLAWRRRYSS 606 (614)
Q Consensus 536 ~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 606 (614)
.+.. .-...++..++|.++|.+..++.+.|..+... |+- .+++||++=- |.+|
T Consensus 176 ~l~~---~ps~~~~i~akA~t~~tv~~~p~~sF~~~~~k~P~s--------------~iriiQvvmT-RLq~ 229 (1158)
T KOG2968|consen 176 SLPG---FPSLSRTIAAKAATDCTVARIPYTSFRESFHKNPES--------------SIRIIQVVMT-RLQR 229 (1158)
T ss_pred hccC---CCcccceeeeeeecCceEEEeccchhhhhhccChHH--------------HHHHHHHHHH-HHHH
Confidence 2221 11135778899999999999999999988776 432 2567777766 5544
No 37
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=96.49 E-value=0.00091 Score=67.20 Aligned_cols=55 Identities=22% Similarity=0.340 Sum_probs=48.3
Q ss_pred HHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007183 314 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQ 368 (614)
Q Consensus 314 ~Yl~SlYwa~~TmtTvGyGdi~p~~~~E~i~~i~~ml~G~~~fa~iig~i~~il~ 368 (614)
+..-|||||.+.+||+|||-.+|.|+..++|+|+.-++|+-+--.++.++++-+.
T Consensus 80 kF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gERln 134 (350)
T KOG4404|consen 80 KFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGERLN 134 (350)
T ss_pred ccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHHHHH
Confidence 4567999999999999999999999999999999999998887777777766543
No 38
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=96.39 E-value=0.0006 Score=54.76 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=27.7
Q ss_pred ccccccchhHHhhcceEEEEecCCCCcchhhHHHHHHHHhhhe
Q 007183 41 LSDKNCLLKALVNWNKIIVHLQGNSGSSIQLFLSMAAVSIDPL 83 (614)
Q Consensus 41 ~~~i~P~s~~~~~Wd~~~~~~~~~~~~~~~~~~~~~~~~v~pl 83 (614)
..+|||.|+++.+||.++++ +++++++++|+
T Consensus 36 ~~IIHP~S~fR~~WD~~m~~------------~~~~~~~~iP~ 66 (77)
T PF08412_consen 36 PWIIHPFSKFRFYWDLIMLI------------LLLYNLIIIPF 66 (77)
T ss_pred CeEEcCCccHHHHHHHHHHH------------HHHHHHHHHhh
Confidence 57999999999999999998 88888888774
No 39
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=96.35 E-value=0.0036 Score=63.00 Aligned_cols=58 Identities=14% Similarity=0.260 Sum_probs=45.9
Q ss_pred HHHHHHHhhhhcccccCCCccCC-------Chhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 007183 315 FLHCFRWGLRNLSCFGQNLQTSS-------NAWE-NFFVILVTISGLVLMLFLIGNIQIYLQTKAT 372 (614)
Q Consensus 315 Yl~SlYwa~~TmtTvGyGdi~p~-------~~~E-~i~~i~~ml~G~~~fa~iig~i~~il~~~~~ 372 (614)
|..|+|+++.|+||+|+||.+|. +..+ +.++.+.+++|..+++-.++-+.-.+.+++.
T Consensus 187 yfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~~~ 252 (350)
T KOG4404|consen 187 YFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTMNA 252 (350)
T ss_pred hhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 67899999999999999999873 2233 4567777889999998888888777766554
No 40
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=96.26 E-value=0.063 Score=48.67 Aligned_cols=110 Identities=15% Similarity=0.174 Sum_probs=81.9
Q ss_pred ccHHHHHHHhhh-ccceeecCCcEEEecC-CccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCe
Q 007183 450 LDEEVLDALCDC-VKPAFYFKHTHIVLEG-DPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDF 527 (614)
Q Consensus 450 ~s~~~l~~L~~~-l~~~~y~~ge~I~~~G-~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~ 527 (614)
.|...-+.|+.. .+.....+|+.-..|| .+.|.+-++++|++.|.. +|.- +..+.|-++
T Consensus 15 Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~-----~g~f--------------LH~I~p~qF 75 (153)
T PF04831_consen 15 VSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSC-----DGRF--------------LHYIYPYQF 75 (153)
T ss_pred CCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEE-----CCEe--------------eEeeccccc
Confidence 677777778777 5556788999988888 566899999999999988 4432 556666666
Q ss_pred eechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHHhHhh
Q 007183 528 WGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 582 (614)
Q Consensus 528 FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~~~r 582 (614)
.....+.. .++ .....-..|+.|.+.|..++.+|+.+..++.. |-++..|.
T Consensus 76 lDSPEW~s-~~~---s~~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L~~vF~ 127 (153)
T PF04831_consen 76 LDSPEWES-LRP---SEDDKFQVTITAEEDCRYLCWPREKLYLLLAKDPFLAAVFS 127 (153)
T ss_pred ccChhhhc-ccc---CCCCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHHHHHHH
Confidence 66554431 111 11123567899999999999999999999999 88877766
No 41
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=95.79 E-value=0.028 Score=61.41 Aligned_cols=110 Identities=15% Similarity=0.260 Sum_probs=84.9
Q ss_pred HHHHhccCcccccccHHHHHHHhhhccceee-cCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccc
Q 007183 437 CLDLLKNVKEFKTLDEEVLDALCDCVKPAFY-FKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKF 515 (614)
Q Consensus 437 ~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~y-~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~ 515 (614)
..++..+.|-|.+++-..-++||..|..... .+|.+|...|+.-|..+.|+.|.|++.. .+|+.
T Consensus 279 LLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~----PdGk~----------- 343 (1283)
T KOG3542|consen 279 LLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVK----PDGKR----------- 343 (1283)
T ss_pred HHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEec----CCCce-----------
Confidence 3456677899999999999999999886554 6899999999999999999999999999 56654
Q ss_pred cccceecCCCCeeechhhHhhhccCcCCCCCCccceE-EEcceEEEEEeCHhhHHHHhhh
Q 007183 516 ISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSV-QALKNVEAFGLMAHDLKHVFIE 574 (614)
Q Consensus 516 ~~~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv-~A~~~~~l~~Ls~~df~~ll~~ 574 (614)
..+.-|+.||...-. +. .. -..-+ .-+.+|+..++..+|+-.++.+
T Consensus 344 ----e~l~mGnSFG~~PT~---dk-qy-----m~G~mRTkVDDCqFVciaqqDycrIln~ 390 (1283)
T KOG3542|consen 344 ----EELKMGNSFGAEPTP---DK-QY-----MIGEMRTKVDDCQFVCIAQQDYCRILNT 390 (1283)
T ss_pred ----EEeecccccCCCCCc---ch-hh-----hhhhhheecccceEEEeehhhHHHHHHH
Confidence 467789999975211 00 00 01112 2357899999999999999988
No 42
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=95.37 E-value=0.006 Score=66.01 Aligned_cols=48 Identities=17% Similarity=0.304 Sum_probs=41.4
Q ss_pred hHHHHHHHHhhhhcccccCCCccCCChhhH--------HHHHHHHHHHHHHHHHHH
Q 007183 313 QKFLHCFRWGLRNLSCFGQNLQTSSNAWEN--------FFVILVTISGLVLMLFLI 360 (614)
Q Consensus 313 ~~Yl~SlYwa~~TmtTvGyGdi~p~~~~E~--------i~~i~~ml~G~~~fa~ii 360 (614)
--|+.|+||+++++||+|+||+.|.+...+ ....++.++|....+...
T Consensus 241 w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 241 WSFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 457889999999999999999999998866 577888888888887776
No 43
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=94.69 E-value=0.16 Score=52.81 Aligned_cols=56 Identities=18% Similarity=0.409 Sum_probs=43.1
Q ss_pred HHHHHHHHhhhhcccccCCCcc--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007183 314 KFLHCFRWGLRNLSCFGQNLQT--SSNAWENFFVILVTISGLVLMLFLIGNIQIYLQT 369 (614)
Q Consensus 314 ~Yl~SlYwa~~TmtTvGyGdi~--p~~~~E~i~~i~~ml~G~~~fa~iig~i~~il~~ 369 (614)
....||-|++-|=||+|||-=. ..-+.-.+..++=+++|+++-|+++|.+-.=++.
T Consensus 112 sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiar 169 (400)
T KOG3827|consen 112 SFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIAR 169 (400)
T ss_pred chhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3567899999999999999744 4445556666677889999999999987665544
No 44
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=93.59 E-value=0.11 Score=57.01 Aligned_cols=104 Identities=16% Similarity=0.190 Sum_probs=78.8
Q ss_pred ChHHHHHHHHHHHHHHhccCcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCc
Q 007183 425 PKELRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSA 504 (614)
Q Consensus 425 p~~Lr~ei~~~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~ 504 (614)
|+.||...-..--...|.+...|.++-..-++.++...+.+.++...++++.|+++++.|++++|.|-+..
T Consensus 23 ~~~~~t~~~~rN~~~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~g--------- 93 (1283)
T KOG3542|consen 23 PPHLRTPDDIRNVYEQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVEG--------- 93 (1283)
T ss_pred CcccCChhhhhhHHHHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEeec---------
Confidence 44444333222223356677888888888999999999999999999999999999999999999998765
Q ss_pred ccccccCcccccccceecCCCCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeC
Q 007183 505 NTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLM 564 (614)
Q Consensus 505 ~~~~~~~n~~~~~~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls 564 (614)
..+-|..+||.- ... .|+.++-.++.+|+.+++
T Consensus 94 ---------------qi~mp~~~fgkr---------~g~---~r~~nclllq~semivid 126 (1283)
T KOG3542|consen 94 ---------------QIYMPYGCFGKR---------TGQ---NRTHNCLLLQESEMIVID 126 (1283)
T ss_pred ---------------ceecCccccccc---------ccc---ccccceeeecccceeeee
Confidence 234466678875 222 488889999999999883
No 45
>PLN03223 Polycystin cation channel protein; Provisional
Probab=90.53 E-value=7.9 Score=46.89 Aligned_cols=24 Identities=8% Similarity=-0.305 Sum_probs=16.9
Q ss_pred cchhhhHHHHHHHHHHHhhhhhce
Q 007183 104 AVTATGLRSLFDFLYIFYITPQLL 127 (614)
Q Consensus 104 ~~~~~~~~~~~d~~f~~DI~l~F~ 127 (614)
...|-+++++.-++-+.=|++-|.
T Consensus 1212 KSfWNwLEIl~IlLS~AAIvLYFv 1235 (1634)
T PLN03223 1212 LSGWNYVDFASIGLHLATIMMWFV 1235 (1634)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHH
Confidence 346788888877777777776553
No 46
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=89.36 E-value=0.51 Score=27.77 Aligned_cols=19 Identities=47% Similarity=0.655 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 007183 591 DAARIIQLAWRRRYSSRNLL 610 (614)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~ 610 (614)
-+|..||..|| .|.-|+..
T Consensus 2 ~aai~iQ~~~R-~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWR-GYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHhc
Confidence 47999999999 88887754
No 47
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=87.19 E-value=0.22 Score=53.50 Aligned_cols=40 Identities=15% Similarity=0.144 Sum_probs=29.0
Q ss_pred HHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHH
Q 007183 316 LHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVL 355 (614)
Q Consensus 316 l~SlYwa~~TmtTvGyGdi~p~~~~E~i~~i~~ml~G~~~ 355 (614)
..|+|+.++|.+||||||-.|.-..-.++.++++.++.++
T Consensus 219 f~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ 258 (1087)
T KOG3193|consen 219 FTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGL 258 (1087)
T ss_pred eeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhc
Confidence 4589999999999999999996555555544444444443
No 48
>COG4709 Predicted membrane protein [Function unknown]
Probab=85.65 E-value=3.3 Score=38.99 Aligned_cols=79 Identities=16% Similarity=0.172 Sum_probs=60.5
Q ss_pred HHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHhc--CCCCChhHHhhcC--ChHHHHHHHHHHHHHHhccCcccccccHH
Q 007183 378 TLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRK--PDTIDVESSLSIL--PKELRRNIKRELCLDLLKNVKEFKTLDEE 453 (614)
Q Consensus 378 ~~~~~~i~~ym~~~~ip~~L~~rV~~y~~~~~~~--~~~~~~~~il~~L--p~~Lr~ei~~~~~~~~l~~i~~F~~~s~~ 453 (614)
++-++++++|++ ++|++.++.+..||+-.+.+ ..+.+|+++..+| |.++-+|+..+.-.+..+.-|-+++.+..
T Consensus 4 ~efL~eL~~yL~--~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~~a 81 (195)
T COG4709 4 TEFLNELEQYLE--GLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVRRA 81 (195)
T ss_pred HHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchHHH
Confidence 345677888885 79999999999999888775 3567799999998 77888888887777777777777776665
Q ss_pred HHHHH
Q 007183 454 VLDAL 458 (614)
Q Consensus 454 ~l~~L 458 (614)
.+..+
T Consensus 82 ii~~~ 86 (195)
T COG4709 82 IIALI 86 (195)
T ss_pred HHHHH
Confidence 44443
No 49
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=82.25 E-value=1.7 Score=27.01 Aligned_cols=20 Identities=50% Similarity=0.702 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhh
Q 007183 590 KDAARIIQLAWRRRYSSRNLL 610 (614)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~ 610 (614)
+.+|..||..|| .|..|+..
T Consensus 3 ~~aa~~IQa~~R-g~~~r~~y 22 (26)
T smart00015 3 TRAAIIIQAAWR-GYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHH-HHHHHHhh
Confidence 468999999999 88888765
No 50
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=80.01 E-value=7.6 Score=36.88 Aligned_cols=59 Identities=20% Similarity=0.326 Sum_probs=46.6
Q ss_pred HHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHhc--CCCCChhHHhhcC--ChHHHHHHHHHHHH
Q 007183 378 TLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRK--PDTIDVESSLSIL--PKELRRNIKRELCL 438 (614)
Q Consensus 378 ~~~~~~i~~ym~~~~ip~~L~~rV~~y~~~~~~~--~~~~~~~~il~~L--p~~Lr~ei~~~~~~ 438 (614)
++=+++++++++ ++|++-++++.+||+-..++ .+|.+|+++.++| |.++-+++..+...
T Consensus 4 ~efL~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~~i 66 (181)
T PF08006_consen 4 NEFLNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEYSI 66 (181)
T ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhhhh
Confidence 345778888886 59999999999999888875 4567899999998 67777777665433
No 51
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=78.43 E-value=50 Score=39.01 Aligned_cols=38 Identities=18% Similarity=0.180 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHhhhhhce-eeEeecccCCceeecCHHHHHHHHHhh-hc-cccc
Q 007183 109 GLRSLFDFLYIFYITPQLL-ADLVASVNAKHEANNSLKSLMKFWLGS-LF-VDLP 160 (614)
Q Consensus 109 ~~~~~~d~~f~~DI~l~F~-t~y~~~~~~~g~~V~d~~~Ia~~Ylk~-~F-~Dll 160 (614)
.=|+++-.+|++++.++-. .|.+- |+ ..|+++ |= +|.+
T Consensus 1160 lsnyIFtaIfV~Em~lKVVALGl~f-----ge---------~aYl~ssWN~LDgf 1200 (1956)
T KOG2302|consen 1160 LSNYIFTAIFVVEMTLKVVALGLYF-----GE---------QAYLRSSWNVLDGF 1200 (1956)
T ss_pred ecchHHHHHHHHHHHHHHHhhhhcc-----ch---------HHHHHHHHHhhhHH
Confidence 3458889999999988754 35332 21 459986 43 7754
No 52
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=71.74 E-value=67 Score=40.72 Aligned_cols=80 Identities=19% Similarity=0.182 Sum_probs=48.2
Q ss_pred cchhhhHHHHHHHHHHHhhhhhceeeEeecccCCceeecCHHHHHHHHHhhh-c-ccccccccHhHHHHHHhcCCccchh
Q 007183 104 AVTATGLRSLFDFLYIFYITPQLLADLVASVNAKHEANNSLKSLMKFWLGSL-F-VDLPAVFPLPQLVILSIIPRMSGLK 181 (614)
Q Consensus 104 ~~~~~~~~~~~d~~f~~DI~l~F~t~y~~~~~~~g~~V~d~~~Ia~~Ylk~~-F-~Dlls~lP~~~l~~~~~~~~~~~~~ 181 (614)
...+.+.+.++-.+|..++.+.-- ..+ | +.|+++. - +|.+-+. ++.+... .....+.+
T Consensus 472 ~~~l~~~~~vF~~lF~~Em~~ki~--al~-----------~----~~yF~~~~n~fD~~iv~-l~~~~~~--~~~~~g~s 531 (1592)
T KOG2301|consen 472 NYLLYLGNVVFTGLFTVEMILKIY--ALG-----------P----RNYFRRGWNIFDLIIVL-LSLLELL--LKNVYGLS 531 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HcC-----------c----HHHHhhhcchheEEEEe-hhhHHhc--ccchHHHH
Confidence 345566677777778888877642 111 1 3588765 4 9988777 5554332 11223456
Q ss_pred HHHHhhHHHHHHHHHHHHHHHh
Q 007183 182 ILSGMMLLKYSVLIQFVLRMIR 203 (614)
Q Consensus 182 ~l~~~rllrl~rl~~~l~rl~r 203 (614)
.++..|++|++|+.++-+.+..
T Consensus 532 vLr~frllRIfkl~k~wp~l~~ 553 (1592)
T KOG2301|consen 532 VLRSFRLLRIFKLIKSWPTLND 553 (1592)
T ss_pred HHHHHHHHHHHHHHHhhHHHHH
Confidence 7777777777777776554433
No 53
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=71.39 E-value=66 Score=37.17 Aligned_cols=74 Identities=18% Similarity=0.209 Sum_probs=52.2
Q ss_pred ccccCCCccCCChh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHhhhhcCCCCHHHHH
Q 007183 327 SCFGQNLQTSSNAW------ENFFVILVTISGLVLMLFLIGNIQIYLQTKATRP-KEMTLRMQEMNEHMPIQKLSRSVQQ 399 (614)
Q Consensus 327 tTvGyGdi~p~~~~------E~i~~i~~ml~G~~~fa~iig~i~~il~~~~~~~-~~~~~~~~~i~~ym~~~~ip~~L~~ 399 (614)
.|+|+||....... -.+|.+++.++.++++-.+|+-|++...+..... .+.+.+-. .--.|-++.+|+.++.
T Consensus 601 ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q~A-~~iL~lErs~p~~~r~ 679 (782)
T KOG3676|consen 601 FTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQWA-ATILMLERSLPPALRK 679 (782)
T ss_pred HhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHH-HHHHHHHhcCCHHHHH
Confidence 78999998754332 4556666777777777888888888887776655 55554443 3345667899999988
Q ss_pred HH
Q 007183 400 QL 401 (614)
Q Consensus 400 rV 401 (614)
+-
T Consensus 680 ~~ 681 (782)
T KOG3676|consen 680 RF 681 (782)
T ss_pred HH
Confidence 73
No 54
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=70.82 E-value=7.6 Score=33.55 Aligned_cols=45 Identities=29% Similarity=0.475 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHHHHHHHhc----------CCCCChhHHhhcCChHHHHHHHHH
Q 007183 391 QKLSRSVQQQLKIYQRYIWRK----------PDTIDVESSLSILPKELRRNIKRE 435 (614)
Q Consensus 391 ~~ip~~L~~rV~~y~~~~~~~----------~~~~~~~~il~~Lp~~Lr~ei~~~ 435 (614)
.-||.++|..|..++.-.-.. ....|...++..||+.||++|...
T Consensus 51 ~ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 51 AALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLD 105 (108)
T ss_pred HhCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhc
Confidence 358999999999998765332 223456789999999999999764
No 55
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=66.25 E-value=10 Score=29.25 Aligned_cols=31 Identities=13% Similarity=0.110 Sum_probs=24.1
Q ss_pred eeecCCcEEEecCCccC-eEEEEEeeEEEEEe
Q 007183 465 AFYFKHTHIVLEGDPIY-EMLFIVQGKMWIYT 495 (614)
Q Consensus 465 ~~y~~ge~I~~~G~~~~-~lyfI~~G~v~v~~ 495 (614)
..++||+..-..-.... ++++|++|++++..
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~ 34 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV 34 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEEE
Confidence 45778887665555555 89999999999986
No 56
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=62.94 E-value=18 Score=45.49 Aligned_cols=44 Identities=11% Similarity=0.129 Sum_probs=31.8
Q ss_pred cchhhhHHHHHHHHHHHhhhhhceeeEeecccCCceeecCHHHHHHHHHhhh-c-cccccccc
Q 007183 104 AVTATGLRSLFDFLYIFYITPQLLADLVASVNAKHEANNSLKSLMKFWLGSL-F-VDLPAVFP 164 (614)
Q Consensus 104 ~~~~~~~~~~~d~~f~~DI~l~F~t~y~~~~~~~g~~V~d~~~Ia~~Ylk~~-F-~Dlls~lP 164 (614)
...+...|+++-.+|.+.+++..- + .|-.. |+++. . +|++-+.-
T Consensus 871 ~~~L~y~D~~Ft~iFt~Em~lK~i----a----~Gf~~---------y~rn~w~~lDf~Vv~v 916 (1592)
T KOG2301|consen 871 NGILEYADYIFTYIFTFEMLLKWI----A----YGFFF---------YFRNAWNWLDFVVVIV 916 (1592)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH----H----hHHHH---------HHhhHHhhhhHHHhhh
Confidence 346788999999999999999843 1 33222 99875 4 99886543
No 57
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=62.79 E-value=12 Score=33.66 Aligned_cols=76 Identities=8% Similarity=0.098 Sum_probs=51.4
Q ss_pred ChhhHHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhh
Q 007183 310 DFPQKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMP 389 (614)
Q Consensus 310 ~~~~~Yl~SlYwa~~TmtTvGyGdi~p~~~~E~i~~i~~ml~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~i~~ym~ 389 (614)
........++++.+.+++. +-++..|.+...|++.+++++++.++.+.--|++++++..-. ++..++.+++..+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~-----~~~~i~sl~dL~~ 113 (148)
T PF00060_consen 40 RWRFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVPK-----YEPPIDSLEDLAN 113 (148)
T ss_dssp -HHHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----HTSS-SSHHHHHT
T ss_pred cCcccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-----cCCCCCCHHHHHH
Confidence 3445677788888888876 556789999999999999999999999999999999887632 2223445555554
Q ss_pred cC
Q 007183 390 IQ 391 (614)
Q Consensus 390 ~~ 391 (614)
..
T Consensus 114 ~~ 115 (148)
T PF00060_consen 114 SG 115 (148)
T ss_dssp HS
T ss_pred CC
Confidence 44
No 58
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=56.05 E-value=20 Score=28.52 Aligned_cols=31 Identities=16% Similarity=0.295 Sum_probs=24.1
Q ss_pred CeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeeec
Q 007183 481 YEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGE 530 (614)
Q Consensus 481 ~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FGe 530 (614)
++..+|++|+|.+.. . ++. ...+++||.|=-
T Consensus 26 ~E~~~vleG~v~it~----~-~G~--------------~~~~~aGD~~~~ 56 (74)
T PF05899_consen 26 DEFFYVLEGEVTITD----E-DGE--------------TVTFKAGDAFFL 56 (74)
T ss_dssp EEEEEEEEEEEEEEE----T-TTE--------------EEEEETTEEEEE
T ss_pred CEEEEEEEeEEEEEE----C-CCC--------------EEEEcCCcEEEE
Confidence 788899999999998 3 333 367889988743
No 59
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=55.27 E-value=75 Score=23.96 Aligned_cols=39 Identities=10% Similarity=0.064 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccH---HHHHHHHHHHHhhhhc
Q 007183 349 TISGLVLMLFLIGNIQIYLQTKATRP---KEMTLRMQEMNEHMPI 390 (614)
Q Consensus 349 ml~G~~~fa~iig~i~~il~~~~~~~---~~~~~~~~~i~~ym~~ 390 (614)
.+++.+.|+. -+-.++.+.+.+. ...++|++.+-+.+++
T Consensus 16 ~vl~~~~Ftl---~IRri~~~s~~kkq~~~~~eqKLDrIIeLLEK 57 (58)
T PF13314_consen 16 IVLFGASFTL---FIRRILINSNAKKQDVDSMEQKLDRIIELLEK 57 (58)
T ss_pred HHHHHHHHHH---HHHHHHHhccccccchhHHHHHHHHHHHHHcc
Confidence 3334444443 3445555544333 3588899988877654
No 60
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=48.20 E-value=84 Score=27.88 Aligned_cols=50 Identities=10% Similarity=0.153 Sum_probs=32.1
Q ss_pred cceeecCCcEEEecCCccCeEEEEEeeEEEEE-eeeccCCCCcccccccCcccccccceecCCCCeeech
Q 007183 463 KPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIY-TSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEE 531 (614)
Q Consensus 463 ~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~-~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FGe~ 531 (614)
....+.||..+-..-....++++|++|++++. . ++++ ...+.+|+.+---
T Consensus 38 ~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i-----~~g~--------------~~~L~aGD~i~~~ 88 (125)
T PRK13290 38 HETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDL-----ATGE--------------VHPIRPGTMYALD 88 (125)
T ss_pred EEEEECCCCcccceeCCCEEEEEEEeCEEEEEEc-----CCCE--------------EEEeCCCeEEEEC
Confidence 33466788654322112247999999999998 4 2233 4678999987543
No 61
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=46.00 E-value=49 Score=28.52 Aligned_cols=51 Identities=14% Similarity=0.190 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHHHHHHHhcC---------C-C--CC-hhHHhhcCChHHHHHHHHHHHHHHhc
Q 007183 392 KLSRSVQQQLKIYQRYIWRKP---------D-T--ID-VESSLSILPKELRRNIKRELCLDLLK 442 (614)
Q Consensus 392 ~ip~~L~~rV~~y~~~~~~~~---------~-~--~~-~~~il~~Lp~~Lr~ei~~~~~~~~l~ 442 (614)
.||.++|.+|..-+...-... . . .+ ..++|..||++||.||..+.....-.
T Consensus 8 aLPeDiR~Evl~~~~~~~~~~~~~~~~~~~~~~~~~~I~pefL~ALP~diR~EVl~qe~~~~~~ 71 (108)
T PF14377_consen 8 ALPEDIREEVLAQQQRERRAQASQRQSPQSSAPQPSQIDPEFLAALPPDIREEVLAQERRERRR 71 (108)
T ss_pred HCCHHHHHHHHHHHHhhccchhcccCcccccCCCccccCHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 489999999865543321100 0 0 01 36899999999999998877665443
No 62
>PF15157 IQ-like: IQ-like
Probab=45.53 E-value=16 Score=29.65 Aligned_cols=16 Identities=50% Similarity=0.910 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHhh
Q 007183 591 DAARIIQLAWRRRYSSR 607 (614)
Q Consensus 591 ~~~~~~~~~~~~~~~~~ 607 (614)
-.+.+||.||| +|-+|
T Consensus 48 skvkiiqrawr-e~lq~ 63 (97)
T PF15157_consen 48 SKVKIIQRAWR-EYLQR 63 (97)
T ss_pred HHHHHHHHHHH-HHHHh
Confidence 45789999999 77664
No 63
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=40.28 E-value=54 Score=30.44 Aligned_cols=39 Identities=13% Similarity=0.330 Sum_probs=27.3
Q ss_pred EecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeee
Q 007183 474 VLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 529 (614)
Q Consensus 474 ~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FG 529 (614)
+...+ .+++|++++|.+.+... ++++.. ...+++|+.|=
T Consensus 43 ~H~~~-tdE~FyqleG~~~l~v~----d~g~~~------------~v~L~eGd~fl 81 (159)
T TIGR03037 43 FHDDP-GEEFFYQLKGEMYLKVT----EEGKRE------------DVPIREGDIFL 81 (159)
T ss_pred cccCC-CceEEEEEcceEEEEEE----cCCcEE------------EEEECCCCEEE
Confidence 44433 68999999999999873 433311 46788998874
No 64
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=38.83 E-value=51 Score=22.04 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=20.3
Q ss_pred HHHHHHhhhhcCCCC-----HHHHHHHHHHH
Q 007183 380 RMQEMNEHMPIQKLS-----RSVQQQLKIYQ 405 (614)
Q Consensus 380 ~~~~i~~ym~~~~ip-----~~L~~rV~~y~ 405 (614)
+..++.++++.+++| .+|.+|+.+|+
T Consensus 5 ~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 5 TVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 456788999999998 57888988874
No 65
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=38.35 E-value=1.7e+02 Score=28.12 Aligned_cols=59 Identities=24% Similarity=0.294 Sum_probs=40.7
Q ss_pred hcCChHHHHHHHHHHHHHHhccCcccc-cccHHHHHHHhhhcccee--ecCCcEEEecCCccC
Q 007183 422 SILPKELRRNIKRELCLDLLKNVKEFK-TLDEEVLDALCDCVKPAF--YFKHTHIVLEGDPIY 481 (614)
Q Consensus 422 ~~Lp~~Lr~ei~~~~~~~~l~~i~~F~-~~s~~~l~~L~~~l~~~~--y~~ge~I~~~G~~~~ 481 (614)
..+|+. ..++...+...++.---.|. ..++...++......+.. +.+||.|+++|+..+
T Consensus 146 ~~~~~~-~~~~~~~l~~~~i~PNl~~d~~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 146 SNLPSE-LRELLKELLSNFIRPNLIYDEEATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred cCCCHH-HHHHHHHHHHhcCCchhhcCHHHHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 345555 44455555455444333343 367778888899999988 999999999999765
No 66
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=37.91 E-value=1e+02 Score=32.91 Aligned_cols=138 Identities=13% Similarity=0.099 Sum_probs=77.4
Q ss_pred hhhHHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhhc
Q 007183 311 FPQKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPI 390 (614)
Q Consensus 311 ~~~~Yl~SlYwa~~TmtTvGyGdi~p~~~~E~i~~i~~ml~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~i~~ym~~ 390 (614)
..--|+.++-+++..+.+++-++....-..-..+++++.+++++.+-+.|..++..++--+.-..-.
T Consensus 97 vLg~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i~~~iqv~~ii~~i~------------- 163 (371)
T PF10011_consen 97 VLGTFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHIARSIQVSNIIARIE------------- 163 (371)
T ss_pred HHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH-------------
Confidence 4457899999999999888877763322333777778888888888888888887764422222111
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCChhHHhhcCChHHHHHHHHHHHHHHhccCcccccccHHHHHHHhhhcccee---e
Q 007183 391 QKLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAF---Y 467 (614)
Q Consensus 391 ~~ip~~L~~rV~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~ei~~~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~---y 467 (614)
++.++.+++.+.-...........+ ...|.+-. . =.-.+.-+.+..+.+-+.+++..-..++ .
T Consensus 164 ----~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~-~-------i~a~~~GYvq~Id~~~L~~~a~~~~~~i~l~~ 229 (371)
T PF10011_consen 164 ----EDARKAIDRLYPEPDGGARPAEPPE--EPPPEEAQ-P-------IRAPRSGYVQAIDYDRLVELAEEHDVVIRLEV 229 (371)
T ss_pred ----HHHHHHHHHhhcCccccCCcCCCCC--CcCCCCce-E-------EecCCCcEEEEecHHHHHHHHHHCCcEEEEEe
Confidence 2233333333322221111000000 00011000 0 0112345677888888889888766444 5
Q ss_pred cCCcEEEe
Q 007183 468 FKHTHIVL 475 (614)
Q Consensus 468 ~~ge~I~~ 475 (614)
.|||+|.+
T Consensus 230 ~~G~fV~~ 237 (371)
T PF10011_consen 230 RPGDFVVE 237 (371)
T ss_pred CCCCeECC
Confidence 78998853
No 67
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=37.52 E-value=7.8e+02 Score=29.34 Aligned_cols=41 Identities=20% Similarity=0.457 Sum_probs=28.1
Q ss_pred hcCChHHHHHHHHHHHHHHhc----cCcccccccHHHHHHHhhhc
Q 007183 422 SILPKELRRNIKRELCLDLLK----NVKEFKTLDEEVLDALCDCV 462 (614)
Q Consensus 422 ~~Lp~~Lr~ei~~~~~~~~l~----~i~~F~~~s~~~l~~L~~~l 462 (614)
+.+|+.||.++..+.....=. .-.+++.+|+....+++..+
T Consensus 327 ~~lp~~lq~ri~~y~~~~~~~~~~~~~~~l~~Lp~~Lr~~i~~~l 371 (823)
T PLN03192 327 NRLPPRLKDQILAYMCLRFKAESLNQQQLIDQLPKSICKSICQHL 371 (823)
T ss_pred cCCCHHHHHHHHHHHHHHHhhccccHHHHHHHcCHHHHHHHHHHH
Confidence 469999999998877554322 22455667777777777654
No 68
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=34.20 E-value=37 Score=25.58 Aligned_cols=19 Identities=21% Similarity=0.412 Sum_probs=16.1
Q ss_pred hHHhhcCChHHHHHHHHHH
Q 007183 418 ESSLSILPKELRRNIKREL 436 (614)
Q Consensus 418 ~~il~~Lp~~Lr~ei~~~~ 436 (614)
-++++.||+.|++|+...+
T Consensus 5 yelfqkLPDdLKrEvldY~ 23 (65)
T COG5559 5 YELFQKLPDDLKREVLDYI 23 (65)
T ss_pred HHHHHHCcHHHHHHHHHHH
Confidence 3688999999999998765
No 69
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=33.57 E-value=89 Score=27.61 Aligned_cols=36 Identities=8% Similarity=0.047 Sum_probs=27.0
Q ss_pred hhccceeecCCcEE-EecCCccCeEEEEEeeEEEEEe
Q 007183 460 DCVKPAFYFKHTHI-VLEGDPIYEMLFIVQGKMWIYT 495 (614)
Q Consensus 460 ~~l~~~~y~~ge~I-~~~G~~~~~lyfI~~G~v~v~~ 495 (614)
..+....+.||+-+ .+--...++.|+|++|+..+..
T Consensus 36 ~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~ 72 (127)
T COG0662 36 YSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTI 72 (127)
T ss_pred EEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEE
Confidence 34556778888875 4444446899999999999988
No 70
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=30.29 E-value=1e+02 Score=27.80 Aligned_cols=56 Identities=16% Similarity=0.168 Sum_probs=34.9
Q ss_pred hccceeecCCcEEEecCC-ccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeeec
Q 007183 461 CVKPAFYFKHTHIVLEGD-PIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGE 530 (614)
Q Consensus 461 ~l~~~~y~~ge~I~~~G~-~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FGe 530 (614)
.+....+.||...-..-. ..+++++|++|+..+...+ .++.+.. ...+.+|+.+=.
T Consensus 31 ~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~--~~~~~~~------------~~~l~~GD~~~i 87 (146)
T smart00835 31 SAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVD--PNGNKVY------------DARLREGDVFVV 87 (146)
T ss_pred EEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEe--CCCCeEE------------EEEecCCCEEEE
Confidence 344456677777544432 2568999999999998732 1122211 467888887643
No 71
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=29.85 E-value=1e+02 Score=27.12 Aligned_cols=49 Identities=14% Similarity=0.141 Sum_probs=37.6
Q ss_pred cceeecCCcEEEecCCc-cCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeeech
Q 007183 463 KPAFYFKHTHIVLEGDP-IYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEE 531 (614)
Q Consensus 463 ~~~~y~~ge~I~~~G~~-~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FGe~ 531 (614)
....+.||..+-.--.+ .+...+|++|++++.. + ++ ...+.+||++-..
T Consensus 46 ~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~-----~-g~--------------~~~l~~Gd~i~ip 95 (131)
T COG1917 46 VLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQL-----E-GE--------------KKELKAGDVIIIP 95 (131)
T ss_pred EEEEECCCcccccccCCCcceEEEEEecEEEEEe-----c-CC--------------ceEecCCCEEEEC
Confidence 35567888888766665 6789999999999988 3 33 4678899998765
No 72
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=29.25 E-value=77 Score=29.95 Aligned_cols=36 Identities=17% Similarity=0.446 Sum_probs=26.4
Q ss_pred CccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeee
Q 007183 478 DPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 529 (614)
Q Consensus 478 ~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FG 529 (614)
+..++++++++|.+.+... ++++.. ...+++|+.|=
T Consensus 52 ~~tdE~FyqleG~~~l~v~----d~g~~~------------~v~L~eGd~fl 87 (177)
T PRK13264 52 DPGEEFFYQLEGDMYLKVQ----EDGKRR------------DVPIREGEMFL 87 (177)
T ss_pred CCCceEEEEECCeEEEEEE----cCCcee------------eEEECCCCEEE
Confidence 4568999999999999884 333211 46788998873
No 73
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=29.08 E-value=37 Score=38.67 Aligned_cols=17 Identities=53% Similarity=0.837 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 007183 592 AARIIQLAWRRRYSSRNL 609 (614)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~ 609 (614)
-|+.||-||| ||-+||.
T Consensus 698 ~A~~IQkAWR-rfv~rrk 714 (1106)
T KOG0162|consen 698 MARRIQKAWR-RFVARRK 714 (1106)
T ss_pred HHHHHHHHHH-HHHHHHH
Confidence 3888999999 8877664
No 74
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=27.75 E-value=3.6e+02 Score=22.43 Aligned_cols=61 Identities=8% Similarity=-0.027 Sum_probs=40.5
Q ss_pred HHHHHHHHhhhhcC-CCCHHHHHHHHHHHHHHHhcCCCCCh--hHHhhcCChHHHHHHHHHHHH
Q 007183 378 TLRMQEMNEHMPIQ-KLSRSVQQQLKIYQRYIWRKPDTIDV--ESSLSILPKELRRNIKRELCL 438 (614)
Q Consensus 378 ~~~~~~i~~ym~~~-~ip~~L~~rV~~y~~~~~~~~~~~~~--~~il~~Lp~~Lr~ei~~~~~~ 438 (614)
.+..+.+.++|.+. +++++-+.++++.++..-.......+ +.+-..+++..|..+...+..
T Consensus 18 ~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~ 81 (104)
T cd07313 18 EEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWE 81 (104)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34556778888874 99999999999998876544322221 334445677787777666544
No 75
>PF15128 T_cell_tran_alt: T-cell leukemia translocation-altered
Probab=26.53 E-value=95 Score=25.31 Aligned_cols=30 Identities=17% Similarity=0.078 Sum_probs=17.8
Q ss_pred HHHHhHhhhcccchhhHHHHHHHHHHHHHHH
Q 007183 575 HQVASSTEFNSNYSVKDAARIIQLAWRRRYS 605 (614)
Q Consensus 575 ~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 605 (614)
.+++-.+=.....|--=-...||+||| +|-
T Consensus 21 ~Dmrv~ifkllL~WlvlsLl~I~lAWk-~yG 50 (92)
T PF15128_consen 21 NDMRVQIFKLLLGWLVLSLLAIHLAWK-VYG 50 (92)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Confidence 344433333334555555678999999 774
No 76
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=25.54 E-value=2.1e+02 Score=28.20 Aligned_cols=31 Identities=16% Similarity=0.020 Sum_probs=20.8
Q ss_pred eeecCCcEEEecCCccCeEEEEEeeEEEEEe
Q 007183 465 AFYFKHTHIVLEGDPIYEMLFIVQGKMWIYT 495 (614)
Q Consensus 465 ~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~ 495 (614)
....+||..-.+-...+....++.|++.+..
T Consensus 34 ~~L~~Ges~~~~~~~~E~clV~v~Gk~~vs~ 64 (270)
T COG3718 34 LRLAAGESATEETGDRERCLVLVTGKATVSA 64 (270)
T ss_pred EEccCCCcccccCCCceEEEEEEeeeEEEee
Confidence 3456788765554444456667899999877
No 77
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=25.48 E-value=69 Score=24.18 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=19.4
Q ss_pred cCCCCHHHHHHHHHHHHHHHhc
Q 007183 390 IQKLSRSVQQQLKIYQRYIWRK 411 (614)
Q Consensus 390 ~~~ip~~L~~rV~~y~~~~~~~ 411 (614)
..++|++|.+.|.+|.+|..++
T Consensus 8 fqkLPDdLKrEvldY~EfLlek 29 (65)
T COG5559 8 FQKLPDDLKREVLDYIEFLLEK 29 (65)
T ss_pred HHHCcHHHHHHHHHHHHHHHHH
Confidence 4689999999999999998764
No 78
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=25.01 E-value=2.8e+02 Score=23.36 Aligned_cols=46 Identities=9% Similarity=0.057 Sum_probs=30.1
Q ss_pred eecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeeech
Q 007183 466 FYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEE 531 (614)
Q Consensus 466 ~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FGe~ 531 (614)
+..|||+=+.- ...+..=|.+|.+++.. +...+ ...+.+|+.|--.
T Consensus 29 Vm~pGeY~F~T--~~~E~M~vvsG~l~V~l----pg~~e--------------w~~~~aGesF~Vp 74 (94)
T PF06865_consen 29 VMLPGEYTFGT--SAPERMEVVSGELEVKL----PGEDE--------------WQTYSAGESFEVP 74 (94)
T ss_dssp EE-SECEEEEE--SS-EEEEEEESEEEEEE----TT-SS---------------EEEETT-EEEE-
T ss_pred EEeeeEEEEcC--CCCEEEEEEEeEEEEEc----CCCcc--------------cEEeCCCCeEEEC
Confidence 46788866644 44578889999999998 22222 6789999999765
No 79
>PF14841 FliG_M: FliG middle domain; PDB: 3HJL_A 3AJC_A 1LKV_X 3SOH_D 3USY_B 3USW_A.
Probab=24.81 E-value=81 Score=25.41 Aligned_cols=40 Identities=25% Similarity=0.516 Sum_probs=30.1
Q ss_pred hHHhhcCChHHHHHHHHHHHHHHhccCcccccccHHHHHHHhhhccce
Q 007183 418 ESSLSILPKELRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPA 465 (614)
Q Consensus 418 ~~il~~Lp~~Lr~ei~~~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~ 465 (614)
.++|..||+.+|.++...+ --+...+++.++.+-..++.+
T Consensus 30 A~VL~~lp~e~r~~v~~Ri--------a~~~~v~~~~i~~ie~~L~~~ 69 (79)
T PF14841_consen 30 AEVLSQLPEELRAEVVRRI--------ARLESVSPEVIEEIEEVLEEK 69 (79)
T ss_dssp HHHHHTS-HHHHHHHHHHH--------HTCCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHH--------HccCCCCHHHHHHHHHHHHHH
Confidence 5788899999988777664 456778999888887777654
No 80
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=24.79 E-value=53 Score=36.35 Aligned_cols=48 Identities=8% Similarity=0.008 Sum_probs=34.5
Q ss_pred cchhhhHHHHHHHHHHHhhhhhceee-----EeecccCCceeecCHHHHHHHHHhhhc--ccccccc
Q 007183 104 AVTATGLRSLFDFLYIFYITPQLLAD-----LVASVNAKHEANNSLKSLMKFWLGSLF--VDLPAVF 163 (614)
Q Consensus 104 ~~~~~~~~~~~d~~f~~DI~l~F~t~-----y~~~~~~~g~~V~d~~~Ia~~Ylk~~F--~Dlls~l 163 (614)
+..+++++++.-++|.++.+++.-.+ |.. ..| +.+|.+..| +|++-++
T Consensus 124 ~~~L~~LEiv~IV~Fg~EfivRlWSAGC~~rYrG---~~G---------RLrFarkp~cvIDiivi~ 178 (654)
T KOG1419|consen 124 SGILYILEIVMIVFFGLEFIVRLWSAGCCCRYRG---WYG---------RLRFARKPFCVIDIIVII 178 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccccc---cee---------eEEeecCCceEEEEeeee
Confidence 45788999999999999999987643 322 123 346788887 9988543
No 81
>PRK10579 hypothetical protein; Provisional
Probab=24.38 E-value=4.3e+02 Score=22.23 Aligned_cols=47 Identities=6% Similarity=0.104 Sum_probs=34.2
Q ss_pred eeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeeech
Q 007183 465 AFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEE 531 (614)
Q Consensus 465 ~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FGe~ 531 (614)
-+..|||+=+ |....+..=|++|.+++..+ ...+ ...+.+|+.|--.
T Consensus 28 GVm~pGey~F--~T~~~E~MeivsG~l~V~Lp----g~~e--------------w~~~~aG~sF~Vp 74 (94)
T PRK10579 28 GVMAEGEYTF--STAEPEEMTVISGALNVLLP----GATD--------------WQVYEAGEVFNVP 74 (94)
T ss_pred EEEeeeEEEE--cCCCcEEEEEEeeEEEEECC----CCcc--------------cEEeCCCCEEEEC
Confidence 3467888555 55556888899999999982 2222 6789999999765
No 82
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=24.35 E-value=3.4e+02 Score=31.69 Aligned_cols=154 Identities=14% Similarity=0.116 Sum_probs=84.6
Q ss_pred hcCChHHHHHHHHHHHHHHhc--c---CcccccccHHHHHHHhhhccceeec-----C--------------CcEEEecC
Q 007183 422 SILPKELRRNIKRELCLDLLK--N---VKEFKTLDEEVLDALCDCVKPAFYF-----K--------------HTHIVLEG 477 (614)
Q Consensus 422 ~~Lp~~Lr~ei~~~~~~~~l~--~---i~~F~~~s~~~l~~L~~~l~~~~y~-----~--------------ge~I~~~G 477 (614)
+.||++||+.|..+...+... . -.+.+++|++.-++|+.++-..... . ....+.+|
T Consensus 371 ~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pg 450 (727)
T KOG0498|consen 371 RQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPG 450 (727)
T ss_pred ccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCC
Confidence 469999999999988887766 2 3578899999999998887432221 1 12234444
Q ss_pred CccCeEEEEEeeEE--EEEeeeccCCCCcccccccCcccccccceecCCCCeeechhhHhhhccCcCC-CCCCccceEEE
Q 007183 478 DPIYEMLFIVQGKM--WIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLS-NIPMSTRSVQA 554 (614)
Q Consensus 478 ~~~~~lyfI~~G~v--~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FGe~~ll~~l~~~~~~-~~~~r~~tv~A 554 (614)
| |+|.+|.+ +.+.. ..|.-. +..-..| -|.-.+.+- ++..++ +. ..-+.. -
T Consensus 451 e-----~iireGd~v~~myFI---~rG~le-------------~~~~~~g-~~~~~~~L~--~Gd~~GeEl-~~~~~~-~ 504 (727)
T KOG0498|consen 451 E-----YIIREGDPVTDMYFI---VRGSLE-------------SITTDGG-GFFVVAILG--PGDFFGEEL-LTWCLD-L 504 (727)
T ss_pred C-----eEEecCCccceeEEE---EeeeEE-------------EEEccCC-ceEEEEEec--CCCccchHH-HHHHhc-C
Confidence 4 88999976 23321 223221 1222222 121122221 111111 11 001110 1
Q ss_pred cceEEEEEeCHhhHHHHhhh--HHHHhHhhhcccchhhHHHHHHHHHHH
Q 007183 555 LKNVEAFGLMAHDLKHVFIE--HQVASSTEFNSNYSVKDAARIIQLAWR 601 (614)
Q Consensus 555 ~~~~~l~~Ls~~df~~ll~~--~~l~~~~r~~~~~~~~~~~~~~~~~~~ 601 (614)
-....+-.++.-++..+-.+ ..+.+.++.......++..++.+--||
T Consensus 505 p~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~~~r 553 (727)
T KOG0498|consen 505 PQTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYSHLWR 553 (727)
T ss_pred CCCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhhhhhh
Confidence 12455666666677776666 777777775555555566677777777
No 83
>PRK06771 hypothetical protein; Provisional
Probab=24.32 E-value=3.1e+02 Score=22.97 Aligned_cols=48 Identities=19% Similarity=0.335 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhhcCCCCHHHHHHHHH
Q 007183 356 MLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQKLSRSVQQQLKI 403 (614)
Q Consensus 356 fa~iig~i~~il~~~~~~~~~~~~~~~~i~~ym~~~~ip~~L~~rV~~ 403 (614)
|-|+.-.+..+.+..+.+....+.+++.+.+.+.--...+.+..++++
T Consensus 14 ~i~i~~~l~~~~~~~~~~~k~ie~~L~~I~~~~Gi~~~~~~~~~e~~~ 61 (93)
T PRK06771 14 FIYIVEKLTKIEKKTDARLKRMEDRLQLITKEMGIVDREPPVNKELRQ 61 (93)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHH
Confidence 445666677777777777777788888887776554443233333333
No 84
>KOG2378 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=23.18 E-value=70 Score=34.50 Aligned_cols=42 Identities=17% Similarity=0.306 Sum_probs=33.3
Q ss_pred CCCeeechhhHhhhccCcCCCCCCccceEEEcc-eEEEEEeCHhhHHHHhhh
Q 007183 524 DGDFWGEELVAWVLRDRSLSNIPMSTRSVQALK-NVEAFGLMAHDLKHVFIE 574 (614)
Q Consensus 524 ~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~-~~~l~~Ls~~df~~ll~~ 574 (614)
+||-||..++. |..||.+++...+ +|..+..++.+|.+++.+
T Consensus 1 eGddfgklalv---------nd~praativl~ed~~~fl~vDk~~Fn~I~~~ 43 (573)
T KOG2378|consen 1 EGDDFGKLALV---------NDAPRAATIVLREDNCHFLRVDKHDFNRILHD 43 (573)
T ss_pred CCcccchhccc---------cccccccceeeecCCCcceeecHHHHHHHHHh
Confidence 58999999775 2235777765554 699999999999999988
No 85
>PHA03029 hypothetical protein; Provisional
Probab=22.33 E-value=2.8e+02 Score=22.05 Aligned_cols=39 Identities=26% Similarity=0.318 Sum_probs=26.6
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHH
Q 007183 338 NAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKE 376 (614)
Q Consensus 338 ~~~E~i~~i~~ml~G~~~fa~iig~i~~il~~~~~~~~~ 376 (614)
++.|.++-++..++=.++.--+||.+-..+-+.++-+..
T Consensus 2 ~d~ei~~~ii~~iiyiilila~igiiwg~llsi~k~raa 40 (92)
T PHA03029 2 DDAEIVFLIIAIIIYIILILAIIGIIWGFLLSINKIRAA 40 (92)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888877777777776666777777777666554433
No 86
>PF07146 DUF1389: Protein of unknown function (DUF1389); InterPro: IPR010792 This family consists of several hypothetical bacterial proteins, which seem to be specific to Chlamydia pneumoniae (Chlamydophila pneumoniae). Members of this family are typically around 400 residues in length. The function of this family is unknown.
Probab=21.58 E-value=8.9e+02 Score=25.23 Aligned_cols=79 Identities=15% Similarity=0.144 Sum_probs=46.9
Q ss_pred hcCCCCHHHHHHHHHHH-----HHHHhcCCCCC-------------hhHHhhcCChHHHHHHHHHHHHHH---hccCc--
Q 007183 389 PIQKLSRSVQQQLKIYQ-----RYIWRKPDTID-------------VESSLSILPKELRRNIKRELCLDL---LKNVK-- 445 (614)
Q Consensus 389 ~~~~ip~~L~~rV~~y~-----~~~~~~~~~~~-------------~~~il~~Lp~~Lr~ei~~~~~~~~---l~~i~-- 445 (614)
+.+.||..++..|++.| ++.-+++-.+. ...-+..+|++||+++...=...+ +....
T Consensus 35 k~~~IP~gf~~vIk~~YP~~i~~~v~~q~LtiqE~r~li~~L~~~~~s~~l~~l~~~L~~kl~~FGi~~l~~~~~~~~Lp 114 (314)
T PF07146_consen 35 KNKNIPQGFRSVIKENYPKVIYDFVVKQDLTIQEFRLLIDGLRNISSSGSLESLPPKLKEKLEDFGIERLQSDCEGIDLP 114 (314)
T ss_pred cCCCCcHHHHHHHHHHCcHHHHHHHHHccCcHHHHHHHHHHHhhhccccccccCCHHHHHHHHHcChHHHHHhhcccCCC
Confidence 46789999999888775 33333222222 223356789999999987544444 33332
Q ss_pred -----ccccccHHHHHHHhhhccceee
Q 007183 446 -----EFKTLDEEVLDALCDCVKPAFY 467 (614)
Q Consensus 446 -----~F~~~s~~~l~~L~~~l~~~~y 467 (614)
+.++||=-.+...+....+...
T Consensus 115 ~Ld~iLlknCPlYwL~kFI~lg~~~~~ 141 (314)
T PF07146_consen 115 DLDDILLKNCPLYWLKKFIDLGSREVP 141 (314)
T ss_pred CHHHHHHHcCCHHHHHHHHHhCCCccc
Confidence 2356777777777555544443
Done!