Query 007183
Match_columns 614
No_of_seqs 313 out of 2636
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 19:16:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007183.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007183hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3beh_A MLL3241 protein; transm 100.0 8.8E-34 3E-38 299.4 5.9 184 312-583 159-343 (355)
2 2ptm_A Hyperpolarization-activ 100.0 1.3E-30 4.3E-35 251.9 21.4 186 369-582 2-188 (198)
3 3ukn_A Novel protein similar t 100.0 3.2E-31 1.1E-35 258.9 14.9 192 364-582 1-193 (212)
4 3bpz_A Potassium/sodium hyperp 100.0 3.5E-30 1.2E-34 249.7 20.4 186 368-582 2-188 (202)
5 1orq_C Potassium channel; volt 99.9 3.7E-22 1.2E-26 196.4 11.3 182 103-369 37-220 (223)
6 4f8a_A Potassium voltage-gated 99.8 3.3E-18 1.1E-22 158.0 14.4 140 417-582 5-145 (160)
7 3ocp_A PRKG1 protein; serine/t 99.7 6.6E-17 2.3E-21 146.0 12.3 130 423-580 7-137 (139)
8 2r9r_B Paddle chimera voltage 99.7 1.1E-17 3.7E-22 183.5 7.8 243 104-438 238-490 (514)
9 2a9h_A Voltage-gated potassium 99.6 1.4E-15 4.6E-20 139.6 11.3 66 312-377 82-147 (155)
10 3idb_B CAMP-dependent protein 99.6 1.3E-15 4.5E-20 141.1 11.4 128 428-579 27-155 (161)
11 4h33_A LMO2059 protein; bilaye 99.6 5.9E-16 2E-20 139.4 8.3 92 315-406 44-135 (137)
12 3gyd_A CNMP-BD protein, cyclic 99.6 8.3E-15 2.8E-19 139.5 16.4 143 417-582 13-160 (187)
13 1wgp_A Probable cyclic nucleot 99.6 1.7E-15 5.8E-20 136.1 10.5 126 439-579 6-134 (137)
14 2pqq_A Putative transcriptiona 99.6 5E-15 1.7E-19 134.6 12.1 122 438-582 4-126 (149)
15 2z69_A DNR protein; beta barre 99.6 1.4E-14 4.8E-19 132.4 14.9 124 437-582 10-134 (154)
16 3pna_A CAMP-dependent protein 99.6 1E-14 3.5E-19 134.0 12.9 117 435-579 34-151 (154)
17 3mdp_A Cyclic nucleotide-bindi 99.6 9E-15 3.1E-19 131.8 12.0 124 439-582 6-130 (142)
18 3vou_A ION transport 2 domain 99.6 2.3E-14 7.8E-19 131.1 14.6 86 315-400 53-148 (148)
19 3shr_A CGMP-dependent protein 99.6 1.1E-14 3.9E-19 148.9 13.7 132 418-577 18-150 (299)
20 1vp6_A CNBD, cyclic-nucleotide 99.6 2.6E-14 8.9E-19 128.3 12.7 116 437-582 9-125 (138)
21 4ev0_A Transcription regulator 99.5 8.3E-14 2.8E-18 135.1 16.1 119 441-582 1-120 (216)
22 3dn7_A Cyclic nucleotide bindi 99.5 4.7E-14 1.6E-18 134.6 12.9 122 438-582 6-129 (194)
23 2ih3_C Voltage-gated potassium 99.5 2.9E-14 1E-18 125.7 10.4 59 313-371 60-118 (122)
24 3fx3_A Cyclic nucleotide-bindi 99.5 7.8E-14 2.7E-18 137.5 14.1 125 435-582 7-132 (237)
25 2d93_A RAP guanine nucleotide 99.5 1.6E-14 5.6E-19 129.3 8.0 122 425-574 2-125 (134)
26 3d0s_A Transcriptional regulat 99.5 6.3E-14 2.1E-18 137.2 12.7 122 438-582 5-127 (227)
27 3e97_A Transcriptional regulat 99.5 1.5E-13 5.2E-18 134.8 13.7 122 438-582 5-127 (231)
28 4ava_A Lysine acetyltransferas 99.5 1.6E-13 5.3E-18 142.7 14.1 120 438-582 12-132 (333)
29 3of1_A CAMP-dependent protein 99.5 2E-13 6.7E-18 135.0 13.1 113 437-577 5-118 (246)
30 3of1_A CAMP-dependent protein 99.5 2.1E-13 7E-18 134.8 13.2 117 436-579 122-239 (246)
31 1zyb_A Transcription regulator 99.5 1.7E-13 5.7E-18 134.9 12.4 124 437-582 16-142 (232)
32 3dv8_A Transcriptional regulat 99.5 3.5E-13 1.2E-17 131.0 14.1 121 439-582 3-126 (220)
33 3dkw_A DNR protein; CRP-FNR, H 99.5 2.4E-13 8.3E-18 132.8 13.1 122 438-582 8-131 (227)
34 2gau_A Transcriptional regulat 99.5 4.1E-13 1.4E-17 131.8 13.1 117 443-582 14-131 (232)
35 2qcs_B CAMP-dependent protein 99.4 1E-12 3.5E-17 133.6 15.4 122 435-579 153-276 (291)
36 3shr_A CGMP-dependent protein 99.4 5.2E-13 1.8E-17 136.5 12.7 126 435-582 153-279 (299)
37 3iwz_A CAP-like, catabolite ac 99.4 1.2E-12 4.1E-17 128.1 14.5 115 438-574 10-124 (230)
38 3tnp_B CAMP-dependent protein 99.4 5.8E-13 2E-17 142.9 12.9 126 429-578 135-261 (416)
39 2qcs_B CAMP-dependent protein 99.4 8.6E-13 3E-17 134.1 12.9 119 433-579 33-152 (291)
40 3eff_K Voltage-gated potassium 99.4 5.4E-13 1.9E-17 120.6 9.8 59 313-371 39-97 (139)
41 1o7f_A CAMP-dependent RAP1 gua 99.4 9.9E-13 3.4E-17 143.2 13.0 137 423-581 26-163 (469)
42 4din_B CAMP-dependent protein 99.4 1.2E-12 4E-17 138.9 11.4 123 435-579 244-367 (381)
43 4din_B CAMP-dependent protein 99.4 8.3E-13 2.8E-17 140.1 9.8 120 431-578 122-242 (381)
44 3ryp_A Catabolite gene activat 99.4 3.8E-12 1.3E-16 122.7 13.6 116 445-582 2-118 (210)
45 2oz6_A Virulence factor regula 99.4 4.4E-12 1.5E-16 121.9 13.0 114 450-582 1-115 (207)
46 3tnp_B CAMP-dependent protein 99.4 2.4E-12 8.2E-17 138.1 12.2 119 438-579 266-391 (416)
47 4f7z_A RAP guanine nucleotide 99.3 3E-12 1E-16 152.3 13.7 137 420-579 24-161 (999)
48 2fmy_A COOA, carbon monoxide o 99.3 2.8E-12 9.5E-17 124.8 9.9 113 439-582 4-117 (220)
49 2q67_A Potassium channel prote 99.3 9.8E-12 3.3E-16 108.0 12.1 58 315-372 50-107 (114)
50 1o7f_A CAMP-dependent RAP1 gua 99.3 5.1E-12 1.7E-16 137.6 12.4 121 435-582 333-456 (469)
51 1ft9_A Carbon monoxide oxidati 99.3 3.4E-12 1.2E-16 124.4 9.6 112 440-582 1-113 (222)
52 3kcc_A Catabolite gene activat 99.3 1.1E-11 3.9E-16 124.1 13.5 113 448-582 55-168 (260)
53 1o5l_A Transcriptional regulat 99.3 1.1E-11 3.8E-16 120.1 10.9 116 444-581 4-120 (213)
54 2k1e_A Water soluble analogue 99.3 1.6E-12 5.4E-17 111.1 3.9 58 314-371 40-97 (103)
55 4f7z_A RAP guanine nucleotide 99.2 3.3E-11 1.1E-15 143.3 13.5 113 435-574 333-447 (999)
56 3e6c_C CPRK, cyclic nucleotide 99.2 2E-11 6.8E-16 121.3 9.8 116 441-582 11-127 (250)
57 3cf6_E RAP guanine nucleotide 99.2 6.7E-11 2.3E-15 134.3 13.4 133 418-578 12-147 (694)
58 3ouf_A Potassium channel prote 99.2 1.3E-10 4.4E-15 97.8 11.4 55 315-369 33-87 (97)
59 3la7_A Global nitrogen regulat 99.2 1.4E-10 4.7E-15 114.8 13.6 110 452-582 30-143 (243)
60 3ldc_A Calcium-gated potassium 99.2 5.2E-11 1.8E-15 97.0 7.3 53 315-367 29-81 (82)
61 3pjs_K KCSA, voltage-gated pot 99.1 4.7E-12 1.6E-16 117.9 -1.2 62 313-374 66-127 (166)
62 2bgc_A PRFA; bacterial infecti 99.1 7.6E-10 2.6E-14 109.0 14.5 111 449-582 3-118 (238)
63 3rvy_A ION transport protein; 99.0 4E-10 1.4E-14 114.5 6.5 61 312-372 178-244 (285)
64 1xl4_A Inward rectifier potass 99.0 1.5E-09 5.1E-14 110.3 10.3 58 313-370 81-138 (301)
65 3b02_A Transcriptional regulat 99.0 2.4E-09 8.4E-14 101.9 10.9 81 465-569 2-82 (195)
66 1p7b_A Integral membrane chann 98.9 1E-09 3.5E-14 112.7 7.7 59 314-372 96-154 (333)
67 3um7_A Potassium channel subfa 98.9 2.9E-09 9.8E-14 107.8 9.7 56 314-369 115-170 (309)
68 2zcw_A TTHA1359, transcription 98.8 1.1E-08 3.9E-13 97.7 8.8 87 458-569 1-89 (202)
69 2qks_A KIR3.1-prokaryotic KIR 98.8 9.6E-09 3.3E-13 105.1 7.6 59 314-372 78-136 (321)
70 3um7_A Potassium channel subfa 98.6 1.7E-08 6E-13 102.1 4.8 60 315-374 225-290 (309)
71 3ukm_A Potassium channel subfa 98.6 5.2E-08 1.8E-12 97.1 7.6 56 314-369 93-148 (280)
72 4gx0_A TRKA domain protein; me 98.6 1.3E-07 4.5E-12 105.2 11.1 53 315-367 52-105 (565)
73 3sya_A G protein-activated inw 98.5 3.8E-07 1.3E-11 93.4 11.2 58 314-371 91-150 (340)
74 3ukm_A Potassium channel subfa 98.5 6.7E-08 2.3E-12 96.3 3.7 55 315-369 202-263 (280)
75 3spc_A Inward-rectifier K+ cha 98.4 8.4E-07 2.9E-11 91.0 11.1 59 314-372 94-154 (343)
76 1lnq_A MTHK channels, potassiu 98.4 2.7E-08 9.2E-13 103.3 -2.1 57 315-371 46-102 (336)
77 4dxw_A Navrh, ION transport pr 97.5 0.00047 1.6E-08 67.0 10.3 58 312-369 163-225 (229)
78 2kyh_A KVAP, voltage-gated pot 95.9 0.0064 2.2E-07 54.6 4.6 48 105-168 52-99 (147)
79 1ors_C Potassium channel; volt 95.5 0.007 2.4E-07 53.3 3.0 48 104-168 36-84 (132)
80 2l53_B CAM, voltage-gated sodi 95.1 0.015 5E-07 36.9 2.8 23 588-611 4-26 (31)
81 2kxw_B Sodium channel protein 94.8 0.016 5.6E-07 35.5 2.4 20 589-609 5-24 (27)
82 4dck_A Sodium channel protein 66.2 3.5 0.00012 37.3 3.0 21 589-610 129-149 (168)
83 3kg2_A Glutamate receptor 2; I 63.0 8.6 0.00029 43.7 6.3 55 314-369 563-617 (823)
84 1n2d_C IQ2 and IQ3 motifs from 55.5 7.6 0.00026 26.9 2.6 20 589-609 27-46 (48)
85 3fjs_A Uncharacterized protein 54.8 55 0.0019 26.8 8.5 67 462-562 38-104 (114)
86 3rns_A Cupin 2 conserved barre 53.0 49 0.0017 31.0 8.8 68 462-563 39-106 (227)
87 2ozj_A Cupin 2, conserved barr 50.6 63 0.0022 26.1 8.2 43 467-529 45-87 (114)
88 1o5u_A Novel thermotoga mariti 47.7 56 0.0019 26.4 7.2 46 464-530 35-80 (101)
89 3lwc_A Uncharacterized protein 46.0 42 0.0014 28.0 6.4 45 465-530 45-89 (119)
90 2ix7_C Myosin-5A; contractIle 45.9 15 0.00051 26.5 3.0 16 592-608 30-45 (58)
91 1yhf_A Hypothetical protein SP 45.7 1E+02 0.0034 24.7 8.7 68 462-563 42-109 (115)
92 3ibm_A Cupin 2, conserved barr 44.4 1E+02 0.0035 27.2 9.1 89 464-586 60-162 (167)
93 3h8u_A Uncharacterized conserv 41.5 33 0.0011 28.4 5.0 49 462-529 41-90 (125)
94 3bcw_A Uncharacterized protein 40.0 23 0.00077 30.1 3.7 45 467-531 56-100 (123)
95 4b29_A Dimethylsulfoniopropion 39.8 45 0.0015 31.3 5.9 44 467-529 139-182 (217)
96 3es4_A Uncharacterized protein 39.6 30 0.001 29.1 4.3 44 468-531 50-93 (116)
97 1v70_A Probable antibiotics sy 39.5 54 0.0018 25.6 5.9 46 464-529 32-78 (105)
98 2pfw_A Cupin 2, conserved barr 38.5 53 0.0018 26.5 5.8 67 463-563 37-103 (116)
99 2gu9_A Tetracenomycin polyketi 37.9 48 0.0017 26.4 5.4 33 463-495 24-59 (113)
100 4e2g_A Cupin 2 conserved barre 37.4 52 0.0018 27.1 5.7 48 462-529 43-90 (126)
101 1dgw_A Canavalin; duplicated s 36.9 27 0.00092 31.6 4.0 52 462-529 43-94 (178)
102 1yfu_A 3-hydroxyanthranilate-3 31.5 37 0.0012 30.7 3.7 36 479-530 54-89 (174)
103 2fqp_A Hypothetical protein BP 31.4 29 0.001 27.5 2.9 48 464-530 22-71 (97)
104 3d0j_A Uncharacterized protein 28.8 45 0.0015 29.0 3.7 65 476-566 46-110 (140)
105 2bnm_A Epoxidase; oxidoreducta 28.8 56 0.0019 29.5 4.8 50 465-530 122-174 (198)
106 3es1_A Cupin 2, conserved barr 27.9 47 0.0016 30.0 3.9 46 464-528 83-128 (172)
107 2b8m_A Hypothetical protein MJ 27.4 67 0.0023 26.1 4.6 30 466-495 33-62 (117)
108 1zvf_A 3-hydroxyanthranilate 3 27.2 39 0.0013 30.5 3.0 63 453-530 12-92 (176)
109 2vpv_A Protein MIF2, MIF2P; nu 26.4 49 0.0017 29.7 3.7 32 479-530 109-140 (166)
110 3rns_A Cupin 2 conserved barre 24.7 91 0.0031 29.1 5.5 67 462-562 155-222 (227)
111 2f4p_A Hypothetical protein TM 24.5 1E+02 0.0036 26.4 5.5 32 464-495 52-83 (147)
112 2opk_A Hypothetical protein; p 24.5 71 0.0024 26.1 4.2 35 478-530 51-85 (112)
113 1o4t_A Putative oxalate decarb 24.3 88 0.003 26.3 4.9 45 464-528 61-106 (133)
114 3lag_A Uncharacterized protein 23.1 32 0.0011 27.7 1.6 34 462-495 19-53 (98)
115 1vj2_A Novel manganese-contain 23.0 81 0.0028 26.1 4.3 31 465-495 53-83 (126)
116 1y9q_A Transcriptional regulat 23.0 1.2E+02 0.004 27.2 5.8 45 465-529 109-155 (192)
117 3d82_A Cupin 2, conserved barr 22.9 1.4E+02 0.0048 23.0 5.6 50 481-564 51-100 (102)
118 3jzv_A Uncharacterized protein 22.7 66 0.0023 28.6 3.9 45 465-529 58-102 (166)
119 2pyt_A Ethanolamine utilizatio 22.4 76 0.0026 27.0 4.0 45 465-531 62-106 (133)
120 3kgz_A Cupin 2 conserved barre 22.3 71 0.0024 28.1 3.9 30 466-495 50-79 (156)
121 3euj_B Chromosome partition pr 22.1 9.3 0.00032 32.8 -1.9 43 389-431 3-59 (152)
122 4i4a_A Similar to unknown prot 21.9 1.1E+02 0.0036 25.2 4.9 31 465-495 39-69 (128)
123 3i7d_A Sugar phosphate isomera 21.4 82 0.0028 27.7 4.2 32 464-495 47-80 (163)
124 2i45_A Hypothetical protein; n 20.9 47 0.0016 26.6 2.3 68 468-568 36-103 (107)
125 4axo_A EUTQ, ethanolamine util 20.5 90 0.0031 27.4 4.1 31 479-529 83-113 (151)
126 2q30_A Uncharacterized protein 20.5 1.3E+02 0.0045 23.6 5.0 32 464-495 37-70 (110)
127 1sfn_A Conserved hypothetical 20.1 1.1E+02 0.0036 29.1 5.0 50 461-530 166-216 (246)
No 1
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.98 E-value=8.8e-34 Score=299.39 Aligned_cols=184 Identities=18% Similarity=0.212 Sum_probs=56.4
Q ss_pred hhHHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhhcC
Q 007183 312 PQKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQ 391 (614)
Q Consensus 312 ~~~Yl~SlYwa~~TmtTvGyGdi~p~~~~E~i~~i~~ml~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~i~~ym~~~ 391 (614)
+..|..|+||+++|||||||||++|.|..|+++++++|++|++++++.+|.+++.+.+.. ++
T Consensus 159 f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~------~~------------ 220 (355)
T 3beh_A 159 FGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEV------RR------------ 220 (355)
T ss_dssp HSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH------------
T ss_pred cccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH------------
Confidence 456889999999999999999999999999999999999999999999999988775411 10
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCChhHHhhcCChHHHHHHHHHHHHHHhccCcccccccHHHHHHHhhhccceeecCCc
Q 007183 392 KLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHT 471 (614)
Q Consensus 392 ~ip~~L~~rV~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~ei~~~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge 471 (614)
+++. .+.+.++++++|++++++.+++++..++++.|+|||
T Consensus 221 ----------~~~~------------------------------~~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge 260 (355)
T 3beh_A 221 ----------GDFV------------------------------RNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGA 260 (355)
T ss_dssp ----------HHHH------------------------------HHHC--------------------------------
T ss_pred ----------Hhhc------------------------------ccchhhhcccccccCCHHHHHHHHHhceEEEECCCC
Confidence 0010 024678889999999999999999999999999999
Q ss_pred EEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeeechhhHhhhccCcCCCCCCccce
Q 007183 472 HIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRS 551 (614)
Q Consensus 472 ~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~t 551 (614)
.|+++||.++++|||.+|.|+++. .+ + ..+++|++|||.+++.+ .+++++
T Consensus 261 ~I~~~G~~~~~ly~I~~G~v~v~~----~~--~---------------~~l~~G~~fGe~~~l~~---------~~~~~~ 310 (355)
T 3beh_A 261 VICRIGEPGDRMFFVVEGSVSVAT----PN--P---------------VELGPGAFFGEMALISG---------EPRSAT 310 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEeCCCcCceEEEEEeeEEEEEE----CC--e---------------eEECCCCEEeehHHhCC---------CCcceE
Confidence 999999999999999999999988 22 1 36889999999987631 257889
Q ss_pred EEEcceEEEEEeCHhhHHHHhhh-HHHHhHhhh
Q 007183 552 VQALKNVEAFGLMAHDLKHVFIE-HQVASSTEF 583 (614)
Q Consensus 552 v~A~~~~~l~~Ls~~df~~ll~~-~~l~~~~r~ 583 (614)
++|.++|+++.+++++|.+++++ |++.+.+..
T Consensus 311 ~~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~ 343 (355)
T 3beh_A 311 VSAATTVSLLSLHSADFQMLCSSSPEIAEIFRK 343 (355)
T ss_dssp ---------------------------------
T ss_pred EEECccEEEEEEeHHHHHHHHHHCHHHHHHHHH
Confidence 99999999999999999999999 888877653
No 2
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.97 E-value=1.3e-30 Score=251.87 Aligned_cols=186 Identities=19% Similarity=0.314 Sum_probs=171.9
Q ss_pred hccccHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHhcCCCCChhHHhhcCChHHHHHHHHHHHHHHhccCcccc
Q 007183 369 TKATRPKEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKRELCLDLLKNVKEFK 448 (614)
Q Consensus 369 ~~~~~~~~~~~~~~~i~~ym~~~~ip~~L~~rV~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~ei~~~~~~~~l~~i~~F~ 448 (614)
+++.+..+|+++++.+++||+.+++|++||.||++||+|.|+ .++.+++++++.||++||.++..+.+.++++++|+|+
T Consensus 2 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~ 80 (198)
T 2ptm_A 2 AMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR-GKMFDERHIFREVSESIRQDVANYNCRDLVASVPFFV 80 (198)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchh
Confidence 578889999999999999999999999999999999999998 4788999999999999999999999999999999999
Q ss_pred cccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCee
Q 007183 449 TLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFW 528 (614)
Q Consensus 449 ~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~F 528 (614)
++|++++..++..++++.|.|||+|+++||.++++|||.+|.|+++. .+|. . +..+++|++|
T Consensus 81 ~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~----~~g~--~------------~~~l~~G~~f 142 (198)
T 2ptm_A 81 GADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM----SDGV--I------------ATSLSDGSYF 142 (198)
T ss_dssp TCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEEC----TTSC--E------------EEEECTTCEE
T ss_pred cCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEe----cCCe--E------------EEEecCCCEe
Confidence 99999999999999999999999999999999999999999999997 4554 2 7899999999
Q ss_pred echhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHHhHhh
Q 007183 529 GEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 582 (614)
Q Consensus 529 Ge~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~~~r 582 (614)
||.+++.+ .+++++++|.++|+++.|++++|.+++++ |.+...+.
T Consensus 143 Ge~~~~~~---------~~~~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~ 188 (198)
T 2ptm_A 143 GEICLLTR---------ERRVASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTME 188 (198)
T ss_dssp SCHHHHHS---------SCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHH
T ss_pred chHHHcCC---------CccceEEEEeeEEEEEEEeHHHHHHHHHHChHHHHHHH
Confidence 99988742 15889999999999999999999999999 98886665
No 3
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.97 E-value=3.2e-31 Score=258.90 Aligned_cols=192 Identities=20% Similarity=0.313 Sum_probs=166.5
Q ss_pred HHHHHhccccHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHhcCCCCChhHHhhcCChHHHHHHHHHHHHHHhcc
Q 007183 364 QIYLQTKATRPKEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKRELCLDLLKN 443 (614)
Q Consensus 364 ~~il~~~~~~~~~~~~~~~~i~~ym~~~~ip~~L~~rV~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~ei~~~~~~~~l~~ 443 (614)
++|+++++.+..+|+++|+.+++||++++||++||.||++||+|.|+.+++.+++++++.||++||.++..+++..++ +
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~ 79 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-Q 79 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-G
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-h
Confidence 468899999999999999999999999999999999999999999998889999999999999999999999998887 7
Q ss_pred CcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecC
Q 007183 444 VKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLA 523 (614)
Q Consensus 444 i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~ 523 (614)
+|+|++++++++..++..++++.|.|||+|+++||.++++|||.+|.|+++. +| .. +..++
T Consensus 80 ~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~-----~~--~~------------~~~l~ 140 (212)
T 3ukn_A 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLK-----DN--TV------------LAILG 140 (212)
T ss_dssp SGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEES-----SS--CE------------EEEEC
T ss_pred cHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEE-----CC--eE------------EEEec
Confidence 9999999999999999999999999999999999999999999999999987 33 22 78999
Q ss_pred CCCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHHhHhh
Q 007183 524 DGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 582 (614)
Q Consensus 524 ~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~~~r 582 (614)
+|++|||.+++.+ ..++++++++|.++|+++.|++++|.+++++ |.+...+.
T Consensus 141 ~G~~fGe~~~~~~-------~~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~ 193 (212)
T 3ukn_A 141 KGDLIGSDSLTKE-------QVIKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFV 193 (212)
T ss_dssp TTCEEECSCCSSS-------SCCBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHH
T ss_pred CCCCcCcHHhccC-------CCCCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHH
Confidence 9999999977521 1115889999999999999999999999999 88876654
No 4
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.97 E-value=3.5e-30 Score=249.66 Aligned_cols=186 Identities=21% Similarity=0.285 Sum_probs=169.5
Q ss_pred HhccccHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHhcCCCCChhHHhhcCChHHHHHHHHHHHHHHhccCccc
Q 007183 368 QTKATRPKEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKRELCLDLLKNVKEF 447 (614)
Q Consensus 368 ~~~~~~~~~~~~~~~~i~~ym~~~~ip~~L~~rV~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~ei~~~~~~~~l~~i~~F 447 (614)
++++.+..+|+++++.+++||+.++||++||.||++||+|.|+. ++.+++++++.||++||.++..+.+.++++++|+|
T Consensus 2 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~-~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f 80 (202)
T 3bpz_A 2 SAMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREKIVNFNCRKLVASMPLF 80 (202)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-cCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCch
Confidence 46788999999999999999999999999999999999999984 78899999999999999999999999999999999
Q ss_pred ccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCe
Q 007183 448 KTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDF 527 (614)
Q Consensus 448 ~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~ 527 (614)
++++++++..|+..++++.|.|||+|+++||.++++|||.+|.|+++. .+| . ...+++|++
T Consensus 81 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~----~~g-~--------------~~~l~~G~~ 141 (202)
T 3bpz_A 81 ANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT----KGN-K--------------EMKLSDGSY 141 (202)
T ss_dssp HTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEC----TTS-C--------------CEEEETTCE
T ss_pred hcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEE----CCC-e--------------EEEEcCCCE
Confidence 999999999999999999999999999999999999999999999986 343 3 346899999
Q ss_pred eechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHHhHhh
Q 007183 528 WGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 582 (614)
Q Consensus 528 FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~~~r 582 (614)
|||.+++.+ .+++++++|.++|+++.|++++|.+++++ |.+...+.
T Consensus 142 fGe~~~~~~---------~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~ 188 (202)
T 3bpz_A 142 FGEICLLTR---------GRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFE 188 (202)
T ss_dssp ECHHHHHHC---------SBCSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHH
T ss_pred eccHHHhcC---------CCcccEEEEeeEEEEEEEEHHHHHHHHHHCHHHHHHHH
Confidence 999988742 15788999999999999999999999999 88876655
No 5
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.87 E-value=3.7e-22 Score=196.42 Aligned_cols=182 Identities=13% Similarity=0.185 Sum_probs=122.6
Q ss_pred ccchhhhHHHHHHHHHHHhhhhhceeeEeecccCCceeecCHHHHHHHHHhhhc-ccccccccHhHHHHHHhcCCccchh
Q 007183 103 LAVTATGLRSLFDFLYIFYITPQLLADLVASVNAKHEANNSLKSLMKFWLGSLF-VDLPAVFPLPQLVILSIIPRMSGLK 181 (614)
Q Consensus 103 ~~~~~~~~~~~~d~~f~~DI~l~F~t~y~~~~~~~g~~V~d~~~Ia~~Ylk~~F-~Dlls~lP~~~l~~~~~~~~~~~~~ 181 (614)
....+..+|.+++++|.+|++++|.++. + .++|+|+ + +|+++++|++....... +.....
T Consensus 37 ~~~~l~~~d~~~~~iF~~e~~lr~~~~~------~----------~~~y~~~-~iiDllailP~~~~~~~~~--~~~~~~ 97 (223)
T 1orq_C 37 YLVRLYLVDLILVIILWADYAYRAYKSG------D----------PAGYVKK-TLYEIPALVPAGLLALIEG--HLAGLG 97 (223)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHTTS------C----------HHHHHHH-HHHHCTTHHHHHHHHHHHH--HHHTTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcccc------c----------HHHHHHH-hHHHHHHHHHHHHHHHHhc--chhHHH
Confidence 3457889999999999999999999762 1 3799998 9 99999999987543110 000112
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhhHHHHHhccccCCC
Q 007183 182 ILSGMMLLKYSVLIQFVLRMIRIYPWTLGKLGEATWAIAAFNLL-LYVLASHVFGALWYFSAIERQTECWKKACLFNNTG 260 (614)
Q Consensus 182 ~l~~~rllrl~rl~~~l~rl~r~~~l~~~~~~~~~~~~~~~~Li-~~~l~~H~~aC~w~~i~~~~~~~~~~~~c~~~~~~ 260 (614)
.++.+|++|+.|++|.+.+..+..+. +........+..++ ..+++.|+.||+++++..
T Consensus 98 ~lr~lRllRllR~~r~~~~~~~~~~~----l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~----------------- 156 (223)
T 1orq_C 98 LFRLVRLLRFLRILLIISRGSKFLSA----IADAADKIRFYHLFGAVMLTVLYGAFAIYIVEY----------------- 156 (223)
T ss_dssp CHHHHHHHHHHHHHHHHHSCSSHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------
Confidence 34444555544444432111111110 00000011222233 333567889998877420
Q ss_pred CCCcccccCCCCCCcccccccCCCCCCCCCCcccchhhhhhccCcccCCChhhHHHHHHHHhhhhcccccCCCccCCChh
Q 007183 261 CTRGSFDCYDSLGNYEFLNEFCPTKPQNTTILDFGIFQHALQSGIVEVPDFPQKFLHCFRWGLRNLSCFGQNLQTSSNAW 340 (614)
Q Consensus 261 c~~~~l~~~~~~~~~sWi~~~~~~~~~~~~~~~~~~y~~~l~~~~~~~~~~~~~Yl~SlYwa~~TmtTvGyGdi~p~~~~ 340 (614)
.+ +++....|..|+||+++|||||||||++|.|..
T Consensus 157 -----------~~----------------------------------~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~ 191 (223)
T 1orq_C 157 -----------PD----------------------------------PNSSIKSVFDALWWAVVTATTVGYGDVVPATPI 191 (223)
T ss_dssp -----------SS----------------------------------TTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHH
T ss_pred -----------CC----------------------------------cCCCcCcchhHHHhHHhHHhccCCCCCCCCCHh
Confidence 00 012234689999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007183 341 ENFFVILVTISGLVLMLFLIGNIQIYLQT 369 (614)
Q Consensus 341 E~i~~i~~ml~G~~~fa~iig~i~~il~~ 369 (614)
|++++++.|++|.+++|+.+|.+++.+++
T Consensus 192 ~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 192 GKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999875
No 6
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.77 E-value=3.3e-18 Score=158.02 Aligned_cols=140 Identities=21% Similarity=0.287 Sum_probs=117.2
Q ss_pred hhHHhhcCChHHHHHHHHHHHHHHhccCcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEee
Q 007183 417 VESSLSILPKELRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTS 496 (614)
Q Consensus 417 ~~~il~~Lp~~Lr~ei~~~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~ 496 (614)
.+++++.||++||.++..+++.++++++++|++++++.++.++..++.+.|.+|++|+++|+.++++|||.+|.|+++.
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~- 83 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQ- 83 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEE-
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEE-
Confidence 3569999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred eccCCCCcccccccCcccccccceecCCCCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-H
Q 007183 497 KERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-H 575 (614)
Q Consensus 497 ~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~ 575 (614)
++ . . +..+++|++||+.+++.+ ...++.++++|.++|+++.|++++|.+++++ |
T Consensus 84 ----~~-~-~------------~~~~~~G~~fG~~~~~~~-------~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p 138 (160)
T 4f8a_A 84 ----DD-E-V------------VAILGKGDVFGDVFWKEA-------TLAQSCANVRALTYCDLHVIKRDALQKVLEFYT 138 (160)
T ss_dssp ----TT-E-E------------EEEEETTCEEECCTTTCS-------SCCBCSSEEEESSCEEEEEEEHHHHHHHHHHCH
T ss_pred ----CC-E-E------------EEEecCCCEeCcHHHhcC-------cccceEEEEEECCceEEEEEcHHHHHHHHHHHH
Confidence 22 1 2 789999999999977521 0025888999999999999999999999999 8
Q ss_pred HHHhHhh
Q 007183 576 QVASSTE 582 (614)
Q Consensus 576 ~l~~~~r 582 (614)
.+...+.
T Consensus 139 ~~~~~~~ 145 (160)
T 4f8a_A 139 AFSHSFS 145 (160)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887665
No 7
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.70 E-value=6.6e-17 Score=145.96 Aligned_cols=130 Identities=19% Similarity=0.310 Sum_probs=114.2
Q ss_pred cCChHHHHHHHHHHHHHHhccCcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCC
Q 007183 423 ILPKELRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNG 502 (614)
Q Consensus 423 ~Lp~~Lr~ei~~~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g 502 (614)
++|+.+|.+...+...++++++++|++++++.++.++..++.+.|.+|++|+++|+.++.+|||.+|.|++.. +|
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-----~g 81 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK-----EG 81 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE-----TT
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE-----CC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999965 44
Q ss_pred CcccccccCcccccccceecCCCCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHHhH
Q 007183 503 SANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASS 580 (614)
Q Consensus 503 ~~~~~~~~~n~~~~~~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~~ 580 (614)
. . +..+++|++||+.+++.+ .+++++++|.++|+++.|++++|.+++++ |.+++.
T Consensus 82 ~--~------------~~~~~~G~~fGe~~~l~~---------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~ 137 (139)
T 3ocp_A 82 V--K------------LCTMGPGKVFGELAILYN---------CTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHT 137 (139)
T ss_dssp E--E------------EEEECTTCEESCHHHHHC---------CCCSSEEEESSCEEEEEEEHHHHHHHHTC-------
T ss_pred E--E------------EEEeCCCCEeccHHHHCC---------CCcceEEEECcceEEEEEcHHHHHHHHhhChHhhhh
Confidence 2 2 789999999999998632 15788999999999999999999999999 877653
No 8
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.70 E-value=1.1e-17 Score=183.46 Aligned_cols=243 Identities=11% Similarity=0.098 Sum_probs=117.9
Q ss_pred cchhhhHHHHHHHHHHHhhhhhceeeEeecccCCceeecCHHHHHHHHHhh-hc-ccccccccHhHHHHHHhcCCccch-
Q 007183 104 AVTATGLRSLFDFLYIFYITPQLLADLVASVNAKHEANNSLKSLMKFWLGS-LF-VDLPAVFPLPQLVILSIIPRMSGL- 180 (614)
Q Consensus 104 ~~~~~~~~~~~d~~f~~DI~l~F~t~y~~~~~~~g~~V~d~~~Ia~~Ylk~-~F-~Dlls~lP~~~l~~~~~~~~~~~~- 180 (614)
...+.++++++.++|.+|++++|.++- . .++|+++ |. +|+++++|+.+.+....... .+.
T Consensus 238 ~~~l~~ie~i~~~iFtiE~ilR~~~~~------~----------k~~Y~ks~wniiDli~iip~~i~l~~~~~~~-~~~~ 300 (514)
T 2r9r_B 238 TDPFFIVETLCIIWFSFEFLVRFFACP------S----------KAGFFTNIMNIIDIVAIIPYYVTIFLTESNK-SVLQ 300 (514)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHSS------C----------SSSSTTSHHHHHHHHTTHHHHHHHHHHHTSC-SHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCC------c----------HHHHHhchhHHHHHHHHHHHHHHHHhhhccc-cchh
Confidence 346789999999999999999998642 1 1479998 56 99999999866544321110 011
Q ss_pred --hHHHHhhHHHHHHHHHHHHHHHhhhhcccccch--hhh--HHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhHHHHHh
Q 007183 181 --KILSGMMLLKYSVLIQFVLRMIRIYPWTLGKLG--EAT--WAIAAFNLLLY-VLASHVFGALWYFSAIERQTECWKKA 253 (614)
Q Consensus 181 --~~l~~~rllrl~rl~~~l~rl~r~~~l~~~~~~--~~~--~~~~~~~Li~~-~l~~H~~aC~w~~i~~~~~~~~~~~~ 253 (614)
..+..+|++|++|++ |++|+.+...+... .+. ....+..++++ ++..+++||++|++--
T Consensus 301 ~~~~~~~lrvlRllRvl----RilkL~r~~~~l~~l~~tl~~s~~~l~~ll~~l~i~~~if~~~~~~~e~---------- 366 (514)
T 2r9r_B 301 FQNVRRVVQIFRIMRIL----RIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEA---------- 366 (514)
T ss_dssp HHTTHHHHHHHHHHGGG----GGGGGGGSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHT----------
T ss_pred hhhHHHHHHHHHHHHHH----HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeec----------
Confidence 112233333333222 22222222111100 000 00112222222 2446777777765320
Q ss_pred ccccCCCCCCcccccCCCCCCcccccccCCCCCCCCCCcccchhhhhhccCcccCCChhhHHHHHHHHhhhhcccccCCC
Q 007183 254 CLFNNTGCTRGSFDCYDSLGNYEFLNEFCPTKPQNTTILDFGIFQHALQSGIVEVPDFPQKFLHCFRWGLRNLSCFGQNL 333 (614)
Q Consensus 254 c~~~~~~c~~~~l~~~~~~~~~sWi~~~~~~~~~~~~~~~~~~y~~~l~~~~~~~~~~~~~Yl~SlYwa~~TmtTvGyGd 333 (614)
.. +.+.+..|..|+||+++|||||||||
T Consensus 367 ------------------~~----------------------------------~~~~F~s~~~a~y~~~vT~TTvGYGD 394 (514)
T 2r9r_B 367 ------------------DE----------------------------------RDSQFPSIPDAFWWAVVSMTTVGYGD 394 (514)
T ss_dssp ------------------TC----------------------------------TTCSCSSHHHHHHHHHHHHTTCCCSS
T ss_pred ------------------cC----------------------------------CCccccchhhhhheeeeEEEecccCC
Confidence 00 11233457889999999999999999
Q ss_pred ccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHhcCC
Q 007183 334 QTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPD 413 (614)
Q Consensus 334 i~p~~~~E~i~~i~~ml~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~i~~ym~~~~ip~~L~~rV~~y~~~~~~~~~ 413 (614)
+.|.+..++++++++|++|++++++.+|.+.+.++....+++ .++..+.-++++.-...|.....+ + .+.+
T Consensus 395 i~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~~~~-~~~~~~l~~h~iicg~~~~~~~l~--~------~~~~ 465 (514)
T 2r9r_B 395 MVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRET-EGEEQAQYLQVTSSPKIPSSPDLK--K------SRSA 465 (514)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHC--------------------------------------
T ss_pred CCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCCEEEeCCCccchhHH--h------cccC
Confidence 999999999999999999999999999999987776544221 111122223344333333322211 0 1122
Q ss_pred CCChhHHhhcCChHHHHHHHHHHHH
Q 007183 414 TIDVESSLSILPKELRRNIKRELCL 438 (614)
Q Consensus 414 ~~~~~~il~~Lp~~Lr~ei~~~~~~ 438 (614)
...++.-..+|.+.++.++......
T Consensus 466 ~~~~~s~~~el~e~~~~~~~~~~~~ 490 (514)
T 2r9r_B 466 STISKSDYMEIQEGVNNSNEDFREE 490 (514)
T ss_dssp -------------------------
T ss_pred CCccccccccccccccccccccccc
Confidence 3334555677788887776654433
No 9
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.62 E-value=1.4e-15 Score=139.61 Aligned_cols=66 Identities=8% Similarity=0.279 Sum_probs=57.6
Q ss_pred hhHHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Q 007183 312 PQKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEM 377 (614)
Q Consensus 312 ~~~Yl~SlYwa~~TmtTvGyGdi~p~~~~E~i~~i~~ml~G~~~fa~iig~i~~il~~~~~~~~~~ 377 (614)
...|..|+||+++|||||||||++|.|..+++++++.|++|++++|+.+|.+++.+.+...++++.
T Consensus 82 ~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~~~~~ 147 (155)
T 2a9h_A 82 LISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQERRGH 147 (155)
T ss_dssp TTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC-----
T ss_pred cCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345889999999999999999999999999999999999999999999999999998877654333
No 10
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.62 E-value=1.3e-15 Score=141.06 Aligned_cols=128 Identities=16% Similarity=0.257 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHhccCcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccc
Q 007183 428 LRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTS 507 (614)
Q Consensus 428 Lr~ei~~~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~ 507 (614)
-|.+-......+.++++++|++++++.++.++..++.+.|.+|++|+++|+.++++|||.+|.|+++.. .+|....
T Consensus 27 ~~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~---~~g~~~~- 102 (161)
T 3idb_B 27 PKTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVK---CDGVGRC- 102 (161)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEE---ETTEEEE-
T ss_pred CCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEc---CCCCeEE-
Confidence 344455566788999999999999999999999999999999999999999999999999999999983 4555443
Q ss_pred cccCcccccccceecCCCCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHHh
Q 007183 508 HSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVAS 579 (614)
Q Consensus 508 ~~~~n~~~~~~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~ 579 (614)
+..+++|++||+.+++. ..+++++++|.++|+++.|++++|.+++++ |.+++
T Consensus 103 -----------~~~~~~G~~fGe~~~~~---------~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~ 155 (161)
T 3idb_B 103 -----------VGNYDNRGSFGELALMY---------NTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKR 155 (161)
T ss_dssp -----------EEEEESCCEECGGGGTC---------CCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSC
T ss_pred -----------EEEcCCCCEechHHHHc---------CCCcccEEEECCCeEEEEEeHHHHHHHHHHCHHHHH
Confidence 78999999999998862 125888999999999999999999999999 77764
No 11
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.62 E-value=5.9e-16 Score=139.43 Aligned_cols=92 Identities=7% Similarity=0.152 Sum_probs=56.2
Q ss_pred HHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhhcCCCC
Q 007183 315 FLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQKLS 394 (614)
Q Consensus 315 Yl~SlYwa~~TmtTvGyGdi~p~~~~E~i~~i~~ml~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~i~~ym~~~~ip 394 (614)
|..|+||+++|||||||||++|.|..|+++++++|++|++++|+++|.+++.+.+....+.+.++.....+...+..+++
T Consensus 44 ~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (137)
T 4h33_A 44 YPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDLT 123 (137)
T ss_dssp HHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC---------------------
T ss_pred HHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 78899999999999999999999999999999999999999999999999998876665554444333334444556677
Q ss_pred HHHHHHHHHHHH
Q 007183 395 RSVQQQLKIYQR 406 (614)
Q Consensus 395 ~~L~~rV~~y~~ 406 (614)
++.+..+++|.+
T Consensus 124 ~~~i~~l~~~l~ 135 (137)
T 4h33_A 124 KEEIAVVEQFLT 135 (137)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHh
Confidence 777777776654
No 12
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.62 E-value=8.3e-15 Score=139.54 Aligned_cols=143 Identities=17% Similarity=0.171 Sum_probs=120.7
Q ss_pred hhHHhhcCChHH----HHHHHHHHHHHHhccCcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEE
Q 007183 417 VESSLSILPKEL----RRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMW 492 (614)
Q Consensus 417 ~~~il~~Lp~~L----r~ei~~~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~ 492 (614)
+....+.++|+| +.+...+...+.++++++|++++++.+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+
T Consensus 13 ~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~ 92 (187)
T 3gyd_A 13 ENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVN 92 (187)
T ss_dssp HHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEE
T ss_pred cceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEE
Confidence 444555555544 3556667778999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeccCCCCcccccccCcccccccceecCCCCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHh
Q 007183 493 IYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVF 572 (614)
Q Consensus 493 v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll 572 (614)
++..+ .+|.+.. +..+++|++||+.+++.+ .++.++++|.++|+++.+++++|.+++
T Consensus 93 v~~~~--~~g~~~~------------~~~~~~G~~fGe~~~l~~---------~~~~~~v~A~~~~~v~~i~~~~~~~l~ 149 (187)
T 3gyd_A 93 VIKDI--PNKGIQT------------IAKVGAGAIIGEMSMIDG---------MPRSASCVASLPTDFAVLSRDALYQLL 149 (187)
T ss_dssp EEEEE--TTTEEEE------------EEEEETTCEESHHHHHHC---------CCCSSEEEEEEEEEEEEEEHHHHHHHH
T ss_pred EEEEC--CCCCeEE------------EEEccCCCeeeeHHHhCC---------CCeeEEEEECCCeEEEEEcHHHHHHHH
Confidence 99864 4554433 789999999999987631 157889999999999999999999999
Q ss_pred hh-HHHHhHhh
Q 007183 573 IE-HQVASSTE 582 (614)
Q Consensus 573 ~~-~~l~~~~r 582 (614)
++ |.+...+.
T Consensus 150 ~~~p~~~~~l~ 160 (187)
T 3gyd_A 150 ANMPKLGNKVL 160 (187)
T ss_dssp HHCHHHHHHHH
T ss_pred HHChHHHHHHH
Confidence 99 88876554
No 13
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.61 E-value=1.7e-15 Score=136.09 Aligned_cols=126 Identities=40% Similarity=0.727 Sum_probs=101.8
Q ss_pred HHhccCcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCccccccc
Q 007183 439 DLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISR 518 (614)
Q Consensus 439 ~~l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~ 518 (614)
++++++++|.+++++.++.++..++.+.|.+||+|+++||.++.+|||.+|.|++... .+|.+..
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~---~~g~~~~------------ 70 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTT---DGGRSGF------------ 70 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECC---SSCSSSS------------
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEc---CCCccee------------
Confidence 3578899999999999999999999999999999999999999999999999997642 3443332
Q ss_pred ce--ecCCCCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHHh
Q 007183 519 KD--HLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVAS 579 (614)
Q Consensus 519 ~~--~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~ 579 (614)
+. .+++|++|||.++++.+...+....++++++++|.++|+++.|++++|.+++++ |.+++
T Consensus 71 ~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~ 134 (137)
T 1wgp_A 71 YNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSGP 134 (137)
T ss_dssp SCEEECCTTCBSSTHHHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCTT
T ss_pred eeeeeecCCCEecHHHHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhHh
Confidence 45 999999999998622222211111124678999999999999999999999998 77654
No 14
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.60 E-value=5e-15 Score=134.59 Aligned_cols=122 Identities=21% Similarity=0.226 Sum_probs=106.8
Q ss_pred HHHhccCcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccc
Q 007183 438 LDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFIS 517 (614)
Q Consensus 438 ~~~l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~ 517 (614)
.+.++++++|.+++++.++.++..++.+.|.+|++|+++|+.++.+|||.+|.|+++..+ .+|.+..
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~--~~g~~~~----------- 70 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTS--PDGRENM----------- 70 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEEC--TTSSEEE-----------
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEEC--CCCcEEE-----------
Confidence 346889999999999999999999999999999999999999999999999999999853 3454433
Q ss_pred cceecCCCCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHHhHhh
Q 007183 518 RKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 582 (614)
Q Consensus 518 ~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~~~r 582 (614)
+..+++|++||+.+++.+ .++.++++|.++|+++.+++++|.+++++ |.+...+.
T Consensus 71 -~~~~~~g~~~G~~~~~~~---------~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~ 126 (149)
T 2pqq_A 71 -LAVVGPSELIGELSLFDP---------GPRTATGTALTEVKLLALGHGDLQPWLNVRPEVATALL 126 (149)
T ss_dssp -EEEECTTCEESGGGGTSC---------EECSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHH
T ss_pred -EEEcCCcCEechHHhcCC---------CCcceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHH
Confidence 789999999999977521 15788999999999999999999999999 88876654
No 15
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.59 E-value=1.4e-14 Score=132.45 Aligned_cols=124 Identities=15% Similarity=0.207 Sum_probs=105.0
Q ss_pred HHHHhccCcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCccccc
Q 007183 437 CLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFI 516 (614)
Q Consensus 437 ~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~ 516 (614)
..+.++++++|.+++++.++.++..++.+.|.+|++|+++|+.++.+|||.+|.|+++..+ .+|.+..
T Consensus 10 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~--~~g~~~~---------- 77 (154)
T 2z69_A 10 HQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLT--PEGQEKI---------- 77 (154)
T ss_dssp HHHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCC--C-----C----------
T ss_pred HHHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEEC--CCCCEEE----------
Confidence 3567899999999999999999999999999999999999999999999999999999743 3444433
Q ss_pred ccceecCCCCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHHhHhh
Q 007183 517 SRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 582 (614)
Q Consensus 517 ~~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~~~r 582 (614)
+..+++|++||+.+++.+ .+++.++++|.++|+++.|++++|.+++++ |.+...+.
T Consensus 78 --~~~~~~G~~~G~~~~~~~--------~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~ 134 (154)
T 2z69_A 78 --LEVTNERNTFAEAMMFMD--------TPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALL 134 (154)
T ss_dssp --CEEECTTEEESGGGGGSS--------CSBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHH
T ss_pred --EEEccCCCeeccHhhccC--------CCCCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHH
Confidence 789999999999987621 112788999999999999999999999999 88776554
No 16
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.58 E-value=1e-14 Score=134.05 Aligned_cols=117 Identities=18% Similarity=0.301 Sum_probs=103.6
Q ss_pred HHHHHHhccCcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCccc
Q 007183 435 ELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSK 514 (614)
Q Consensus 435 ~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~ 514 (614)
....++++++++|.+++++.+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++. +|..
T Consensus 34 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-----~~~~---------- 98 (154)
T 3pna_A 34 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV-----NNEW---------- 98 (154)
T ss_dssp HHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE-----TTEE----------
T ss_pred HHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE-----CCEE----------
Confidence 4456789999999999999999999999999999999999999999999999999999987 3322
Q ss_pred ccccceecCCCCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHHh
Q 007183 515 FISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVAS 579 (614)
Q Consensus 515 ~~~~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~ 579 (614)
+..+++|++||+.+++.+ .++.++++|.++|+++.|++++|.+++++ +.+++
T Consensus 99 ----~~~~~~G~~fGe~~~~~~---------~~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~ 151 (154)
T 3pna_A 99 ----ATSVGEGGSFGELALIYG---------TPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKR 151 (154)
T ss_dssp ----EEEECTTCEECCHHHHHC---------CCCSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC-
T ss_pred ----EEEecCCCEeeehHhhcC---------CCcceEEEECcceEEEEEeHHHHHHHHHhChHHHh
Confidence 678999999999988742 15788999999999999999999999998 66554
No 17
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.58 E-value=9e-15 Score=131.82 Aligned_cols=124 Identities=15% Similarity=0.181 Sum_probs=102.3
Q ss_pred HHhccCcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCccccccc
Q 007183 439 DLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISR 518 (614)
Q Consensus 439 ~~l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~ 518 (614)
+.++++++|++++++.++.++..++.+.|.+|++|+++|+.++.+|||.+|.|+++..+ .+|.+..+ +.
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~--~~g~~~~~---------~~ 74 (142)
T 3mdp_A 6 ERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSN--GGAGSAAN---------ST 74 (142)
T ss_dssp TGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC--------------------CE
T ss_pred HHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEEC--CCCCceEe---------ee
Confidence 46789999999999999999999999999999999999999999999999999999743 23322100 01
Q ss_pred ceecCCCCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHHhHhh
Q 007183 519 KDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 582 (614)
Q Consensus 519 ~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~~~r 582 (614)
+..+++|++||+.+++. ..++.++++|.++|+++.|++++|.+++++ |.+...+.
T Consensus 75 ~~~~~~G~~fG~~~~~~---------~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~ 130 (142)
T 3mdp_A 75 VCSVVPGAIFGVSSLIK---------PYHYTSSARATKPVRVVDINGARLREMSENNQALGQVLM 130 (142)
T ss_dssp EEEECTTCEECGGGSST---------TCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHH
T ss_pred EEEecCCCEechHHHcC---------CCCceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHH
Confidence 57899999999997752 125788999999999999999999999999 88875544
No 18
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.58 E-value=2.3e-14 Score=131.09 Aligned_cols=86 Identities=14% Similarity=0.263 Sum_probs=70.8
Q ss_pred HHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHh----ccccHHHHHHHHHHH
Q 007183 315 FLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQI------YLQT----KATRPKEMTLRMQEM 384 (614)
Q Consensus 315 Yl~SlYwa~~TmtTvGyGdi~p~~~~E~i~~i~~ml~G~~~fa~iig~i~~------il~~----~~~~~~~~~~~~~~i 384 (614)
|..|+||+++|+|||||||++|.|..+++++++.+++|++++++.++.+++ +... .+....+..++++++
T Consensus 53 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~i 132 (148)
T 3vou_A 53 PLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAI 132 (148)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999886 3332 345556667889999
Q ss_pred HhhhhcCCCCHHHHHH
Q 007183 385 NEHMPIQKLSRSVQQQ 400 (614)
Q Consensus 385 ~~ym~~~~ip~~L~~r 400 (614)
++++++++.|++|+.|
T Consensus 133 ~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 133 EKKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHHTTC------
T ss_pred HHHHHhcCCCcCCCCC
Confidence 9999999999999876
No 19
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.57 E-value=1.1e-14 Score=148.88 Aligned_cols=132 Identities=19% Similarity=0.309 Sum_probs=117.0
Q ss_pred hHHhhcCChHHHHHHHHHHHHHHhccCcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeee
Q 007183 418 ESSLSILPKELRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSK 497 (614)
Q Consensus 418 ~~il~~Lp~~Lr~ei~~~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~ 497 (614)
..-..++|+..|.+...+...+.++++++|++++++.+..|+..++.+.|.+|++|+++||.++.+|||.+|.|++..
T Consensus 18 ~~~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~-- 95 (299)
T 3shr_A 18 RGSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK-- 95 (299)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE--
T ss_pred ccccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE--
Confidence 344568999999999999999999999999999999999999999999999999999999999999999999999966
Q ss_pred ccCCCCcccccccCcccccccceecCCCCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HH
Q 007183 498 ERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQ 576 (614)
Q Consensus 498 ~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~ 576 (614)
+|.. +..+.+|++|||.+++.+ .+|+++++|.++|+++.|++++|.+++.. |.
T Consensus 96 ---~g~~--------------~~~~~~G~~fGe~~ll~~---------~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~ 149 (299)
T 3shr_A 96 ---EGVK--------------LCTMGPGKVFGELAILYN---------CTRTATVKTLVNVKLWAIDRQCFQTIMMRTGL 149 (299)
T ss_dssp ---TTEE--------------EEEECTTCEESCSGGGTT---------TBCCSEEEESSCEEEEEECHHHHHHHHHHHHH
T ss_pred ---CCEE--------------EEEeCCCCeeeHhHHhcC---------CCCCcEEEEcCCeEEEEEcHHHHHHHhhHhHH
Confidence 4422 789999999999988632 26889999999999999999999999998 54
Q ss_pred H
Q 007183 577 V 577 (614)
Q Consensus 577 l 577 (614)
.
T Consensus 150 ~ 150 (299)
T 3shr_A 150 I 150 (299)
T ss_dssp H
T ss_pred H
Confidence 3
No 20
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.55 E-value=2.6e-14 Score=128.33 Aligned_cols=116 Identities=22% Similarity=0.293 Sum_probs=103.1
Q ss_pred HHHHhccCcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCccccc
Q 007183 437 CLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFI 516 (614)
Q Consensus 437 ~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~ 516 (614)
..+.++++++|.+++++.+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++. .+ .
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~----~~--~------------ 70 (138)
T 1vp6_A 9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVAT----PN--P------------ 70 (138)
T ss_dssp HHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECS----SS--C------------
T ss_pred HHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEe----CC--c------------
Confidence 45689999999999999999999999999999999999999999999999999999987 22 1
Q ss_pred ccceecCCCCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHHhHhh
Q 007183 517 SRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 582 (614)
Q Consensus 517 ~~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~~~r 582 (614)
..+++|++||+.+++.+ .++.++++|.++|+++.|++++|.+++++ |.+...+.
T Consensus 71 ---~~~~~G~~~G~~~~~~~---------~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~ 125 (138)
T 1vp6_A 71 ---VELGPGAFFGEMALISG---------EPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFR 125 (138)
T ss_dssp ---EEECTTCEECHHHHHHC---------CCCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHH
T ss_pred ---ceECCCCEeeehHhccC---------CCceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHH
Confidence 36789999999988631 14678999999999999999999999999 88876655
No 21
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.54 E-value=8.3e-14 Score=135.05 Aligned_cols=119 Identities=20% Similarity=0.285 Sum_probs=103.0
Q ss_pred hccCcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccce
Q 007183 441 LKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKD 520 (614)
Q Consensus 441 l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~ 520 (614)
|+++|+|++++++.++.++..++++.|++|++|+++|+.++.+|||.+|.|+++..+ .+|.+.. +.
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~--~~g~~~~------------~~ 66 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTH--LGGQERT------------LA 66 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEEC--SSSCEEE------------EE
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEEC--CCCCEEE------------EE
Confidence 467899999999999999999999999999999999999999999999999999854 4555443 78
Q ss_pred ecCCCCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHHhHhh
Q 007183 521 HLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 582 (614)
Q Consensus 521 ~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~~~r 582 (614)
.+++|++||+.+++.+ .+++++++|.++|+++.+++++|.+++.+ |.+...+.
T Consensus 67 ~~~~g~~~G~~~~~~~---------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~ 120 (216)
T 4ev0_A 67 LLGPGELFGEMSLLDE---------GERSASAVAVEDTELLALFREDYLALIRRLPLVAHNLA 120 (216)
T ss_dssp EECTTCEECHHHHHHC---------CBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHH
T ss_pred EecCCCEEeehhhcCC---------CCcceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHH
Confidence 9999999999988631 14778999999999999999999999999 88876554
No 22
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.53 E-value=4.7e-14 Score=134.57 Aligned_cols=122 Identities=13% Similarity=0.186 Sum_probs=106.4
Q ss_pred HHHhccCcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccc
Q 007183 438 LDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFIS 517 (614)
Q Consensus 438 ~~~l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~ 517 (614)
..++++++.|.+++++.++.+...++.+.|++|++|+++||.++.+|||.+|.|+++..+ .+|.+..
T Consensus 6 ~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~--~~G~e~~----------- 72 (194)
T 3dn7_A 6 TALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFID--EKGIEQT----------- 72 (194)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEEC--TTSCEEE-----------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEEC--CCCCEEE-----------
Confidence 457778899999999999999999999999999999999999999999999999999854 4555544
Q ss_pred cceecCCCCeeech-hhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHHhHhh
Q 007183 518 RKDHLADGDFWGEE-LVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 582 (614)
Q Consensus 518 ~~~~l~~G~~FGe~-~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~~~r 582 (614)
+..+++|++|||. +++. ..++.++++|.++|+++.+++++|.+++++ |.+...+.
T Consensus 73 -~~~~~~g~~~ge~~~~~~---------~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~ 129 (194)
T 3dn7_A 73 -TQFAIENWWLSDYMAFQK---------QQPADFYIQSVENCELLSITYTEQENLFERIPALERYFR 129 (194)
T ss_dssp -EEEEETTCEECCHHHHHH---------TCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHH
T ss_pred -EEEccCCcEEeehHHHhc---------CCCCceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHH
Confidence 7889999999987 4442 124778999999999999999999999999 88887665
No 23
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.53 E-value=2.9e-14 Score=125.73 Aligned_cols=59 Identities=7% Similarity=0.289 Sum_probs=55.5
Q ss_pred hHHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007183 313 QKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKA 371 (614)
Q Consensus 313 ~~Yl~SlYwa~~TmtTvGyGdi~p~~~~E~i~~i~~ml~G~~~fa~iig~i~~il~~~~ 371 (614)
..|..|+||+++|+|||||||++|.|..+++++++.|++|..++|+.+|.+++.+.+..
T Consensus 60 ~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~ 118 (122)
T 2ih3_C 60 ITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGRE 118 (122)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45889999999999999999999999999999999999999999999999999987644
No 24
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.52 E-value=7.8e-14 Score=137.47 Aligned_cols=125 Identities=15% Similarity=0.186 Sum_probs=109.9
Q ss_pred HHHHHHhccCcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCccc
Q 007183 435 ELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSK 514 (614)
Q Consensus 435 ~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~ 514 (614)
....+.++++++|.+++++.++.++..++.+.|.+|++|+++|+.++.+|||.+|.|+++..+ .+|.+..
T Consensus 7 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~--~~G~~~~-------- 76 (237)
T 3fx3_A 7 EAQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMT--PTGSEAV-------- 76 (237)
T ss_dssp HHHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEC--TTSCEEE--------
T ss_pred HHHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEEC--CCCCEEE--------
Confidence 345678999999999999999999999999999999999999999999999999999999854 4555443
Q ss_pred ccccceecCCCCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHHhHhh
Q 007183 515 FISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 582 (614)
Q Consensus 515 ~~~~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~~~r 582 (614)
+..+++|++||+.+++.+ .++.++++|.++|+++.+++++|.+++.+ |.+...+.
T Consensus 77 ----~~~~~~G~~~G~~~~~~~---------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~ 132 (237)
T 3fx3_A 77 ----VSVFTRGESFGEAVALRN---------TPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISIL 132 (237)
T ss_dssp ----EEEEETTEEECHHHHHHT---------CCCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHH
T ss_pred ----EEEeCCCCEechHHHhcC---------CCCCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHH
Confidence 789999999999988631 15788999999999999999999999999 88876554
No 25
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.52 E-value=1.6e-14 Score=129.34 Aligned_cols=122 Identities=14% Similarity=0.179 Sum_probs=104.7
Q ss_pred ChHHHHHHHHHHHHHHhccCcccccccHHHHHHHhhhccceeec-CCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCC
Q 007183 425 PKELRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYF-KHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGS 503 (614)
Q Consensus 425 p~~Lr~ei~~~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~y~-~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~ 503 (614)
||+.|.+--.....+.++++++|..++++.++.++..++.+.|. +|++|+++|+.++.+|||.+|.|+++. .+|.
T Consensus 2 ~p~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~----~~g~ 77 (134)
T 2d93_A 2 SSGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISH----PDGK 77 (134)
T ss_dssp CCSCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEEC----SSSC
T ss_pred ChhhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEc----CCCc
Confidence 55666665556667789999999999999999999999999999 999999999999999999999999987 3443
Q ss_pred cccccccCcccccccceecCCCCeeechhhHhhhccCcCCCCCCccceE-EEcceEEEEEeCHhhHHHHhhh
Q 007183 504 ANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSV-QALKNVEAFGLMAHDLKHVFIE 574 (614)
Q Consensus 504 ~~~~~~~~n~~~~~~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv-~A~~~~~l~~Ls~~df~~ll~~ 574 (614)
...+++|++||+.+++.+ .++.+++ +|.++|+++.|++++|.+++++
T Consensus 78 ---------------~~~l~~G~~fG~~~~~~~---------~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~ 125 (134)
T 2d93_A 78 ---------------VENLFMGNSFGITPTLDK---------QYMHGIVRTKVDDCQFVCIAQQDYWRILNH 125 (134)
T ss_dssp ---------------EEEECTTCEESCCSSSCC---------EECCSEEEESSSSEEEEEEEHHHHHHHSSC
T ss_pred ---------------EEEecCCCccChhHhcCC---------CcceeEEEEEecceEEEEEeHHHHHHHHHH
Confidence 246889999999977521 2466788 9999999999999999999876
No 26
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.51 E-value=6.3e-14 Score=137.21 Aligned_cols=122 Identities=18% Similarity=0.274 Sum_probs=107.2
Q ss_pred HHHhccCcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccc
Q 007183 438 LDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFIS 517 (614)
Q Consensus 438 ~~~l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~ 517 (614)
.+.++++++|.+++++.++.++..++.+.|.+|++|+++||.++.+|||.+|.|+++..+ .+|.+..
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~--~~g~~~~----------- 71 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRA--PDGRENL----------- 71 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEEC--TTSCEEE-----------
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEEC--CCCcEEE-----------
Confidence 457899999999999999999999999999999999999999999999999999999854 4555443
Q ss_pred cceecCCCCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHHhHhh
Q 007183 518 RKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 582 (614)
Q Consensus 518 ~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~~~r 582 (614)
+..+++|++||+.+++.+ .++.++++|.++|+++.+++++|.+++++ |.+...+.
T Consensus 72 -~~~~~~G~~~G~~~~~~~---------~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~ 127 (227)
T 3d0s_A 72 -LTIMGPSDMFGELSIFDP---------GPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLL 127 (227)
T ss_dssp -EEEECTTCEESCHHHHSC---------SCCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHH
T ss_pred -EEEecCCCEEeeHHHcCC---------CCceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHH
Confidence 789999999999988621 25788999999999999999999999998 87776554
No 27
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.50 E-value=1.5e-13 Score=134.85 Aligned_cols=122 Identities=16% Similarity=0.163 Sum_probs=106.0
Q ss_pred HHHhccCcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccc
Q 007183 438 LDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFIS 517 (614)
Q Consensus 438 ~~~l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~ 517 (614)
.++++++++|.+++++.++.++..++.+.|.+|++|+++|+.++.+|||.+|.|+++..+ .+|.+..
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~--~~g~~~~----------- 71 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVS--LGGRERV----------- 71 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEEC--C--CEEE-----------
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEEC--CCCceEE-----------
Confidence 467899999999999999999999999999999999999999999999999999999854 4555443
Q ss_pred cceecCCCCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHHhHhh
Q 007183 518 RKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 582 (614)
Q Consensus 518 ~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~~~r 582 (614)
+..+++|++||+.+++. ..++.++++|.++|+++.+++++|.+++.+ |.+...+.
T Consensus 72 -~~~~~~g~~~G~~~~~~---------~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~ 127 (231)
T 3e97_A 72 -LGDIYAPGVVGETAVLA---------HQERSASVRALTPVRTLMLHREHFELILRRHPRVLWNLA 127 (231)
T ss_dssp -EEEEESSEEESTTTTTC---------CCCCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHH
T ss_pred -EEecCCCCEEeeHHHhC---------CCCceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHH
Confidence 78999999999997752 125888999999999999999999999988 87776544
No 28
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.49 E-value=1.6e-13 Score=142.72 Aligned_cols=120 Identities=16% Similarity=0.166 Sum_probs=105.2
Q ss_pred HHHhccCcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccc
Q 007183 438 LDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFIS 517 (614)
Q Consensus 438 ~~~l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~ 517 (614)
.+.++++++|++++++.+..++..++.+.|.+|++|+++||.++.+|||.+|.|+++..+ .+|.+ .
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~--~~g~~-~----------- 77 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVG--DDGVA-I----------- 77 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEEC--TTCCE-E-----------
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEEC--CCCcE-E-----------
Confidence 468899999999999999999999999999999999999999999999999999999853 33433 3
Q ss_pred cceecCCCCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHHhHhh
Q 007183 518 RKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 582 (614)
Q Consensus 518 ~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~~~r 582 (614)
+..+++|++|||.+++.+ .+|+++++|.++|+++.|++++|.+++ + |.+...+.
T Consensus 78 -~~~~~~G~~fGe~~l~~~---------~~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~ 132 (333)
T 4ava_A 78 -IARALPGMIVGEIALLRD---------SPRSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLL 132 (333)
T ss_dssp -EEEECTTCEESHHHHHHT---------CBCSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHH
T ss_pred -EEEecCCCEeeHHHhcCC---------CCceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHH
Confidence 789999999999988742 258899999999999999999999999 6 77665444
No 29
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.48 E-value=2e-13 Score=134.99 Aligned_cols=113 Identities=16% Similarity=0.225 Sum_probs=101.5
Q ss_pred HHHHhccCcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCccccc
Q 007183 437 CLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFI 516 (614)
Q Consensus 437 ~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~ 516 (614)
..+.++++++|++++++.++.++..++.+.|.+|++|+++||.++++|+|.+|.|+++. ++..
T Consensus 5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~-----~~~~------------ 67 (246)
T 3of1_A 5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV-----NDNK------------ 67 (246)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEES-----TTSC------------
T ss_pred HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEE-----CCEE------------
Confidence 46788999999999999999999999999999999999999999999999999999987 3332
Q ss_pred ccceecCCCCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHH
Q 007183 517 SRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQV 577 (614)
Q Consensus 517 ~~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l 577 (614)
+..+++|++|||.+++.+ .+|+++++|.++|+++.|++++|.+++.+ |..
T Consensus 68 --~~~~~~g~~fGe~~l~~~---------~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~ 118 (246)
T 3of1_A 68 --VNSSGPGSSFGELALMYN---------SPRAATVVATSDCLLWALDRLTFRKILLGSSFK 118 (246)
T ss_dssp --CEEECTTCEECHHHHHHT---------CCCSSEEEESSCEEEEEEEHHHHHHTTTTTTSH
T ss_pred --EEecCCCCeeehhHHhcC---------CCCCcEEEECCCeEEEEEEhHHHHHHHHHhHHH
Confidence 688999999999988742 15889999999999999999999999988 543
No 30
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.48 E-value=2.1e-13 Score=134.84 Aligned_cols=117 Identities=21% Similarity=0.233 Sum_probs=103.8
Q ss_pred HHHHHhccCcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccc
Q 007183 436 LCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKF 515 (614)
Q Consensus 436 ~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~ 515 (614)
.+..+++++++|+++++..+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++. .+++ .
T Consensus 122 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~----~~~~--~--------- 186 (246)
T 3of1_A 122 MYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSK----KGQG--V--------- 186 (246)
T ss_dssp HSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEE----TTTE--E---------
T ss_pred HHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEE----cCCc--e---------
Confidence 445678889999999999999999999999999999999999999999999999999998 2322 2
Q ss_pred cccceecCCCCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHHh
Q 007183 516 ISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVAS 579 (614)
Q Consensus 516 ~~~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~ 579 (614)
+..+++|++|||.+++.+ .+|+++++|.++|+++.|++++|.+++.+ |++.+
T Consensus 187 ---~~~l~~g~~fGe~~~~~~---------~~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~~ 239 (246)
T 3of1_A 187 ---INKLKDHDYFGEVALLND---------LPRQATVTATKRTKVATLGKSGFQRLLGPAVDVLK 239 (246)
T ss_dssp ---EEEEETTCEECHHHHHHT---------CBCSSEEEESSCEEEEEEEHHHHHHHCTTHHHHHH
T ss_pred ---EEEcCCCCcccHHHHhCC---------CCcccEEEECCCEEEEEEeHHHHHHHhccHHHHHh
Confidence 789999999999998742 25889999999999999999999999998 77653
No 31
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.48 E-value=1.7e-13 Score=134.94 Aligned_cols=124 Identities=13% Similarity=0.085 Sum_probs=106.8
Q ss_pred HHHHhccCcccccccHHHHHHHhhh--ccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCccc
Q 007183 437 CLDLLKNVKEFKTLDEEVLDALCDC--VKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSK 514 (614)
Q Consensus 437 ~~~~l~~i~~F~~~s~~~l~~L~~~--l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~ 514 (614)
....+.++++|.+++++.++.++.. ++.+.|.+||+|+++||.++.+|||.+|.|+++..+ .+|.+..
T Consensus 16 ~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~--~~G~~~~-------- 85 (232)
T 1zyb_A 16 MFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNA--KENIYTV-------- 85 (232)
T ss_dssp HHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEEC--GGGSCEE--------
T ss_pred HHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEEC--CCCCEEE--------
Confidence 3456889999999999999999998 999999999999999999999999999999998743 4454443
Q ss_pred ccccceecCCCCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHHhHhh
Q 007183 515 FISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 582 (614)
Q Consensus 515 ~~~~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~~~r 582 (614)
+..+++|++||+.+++. ..+++.++++|.++|+++.+++++|.+++.+ |.+...+.
T Consensus 86 ----l~~~~~G~~fG~~~~~~--------~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~ 142 (232)
T 1zyb_A 86 ----IEQIEAPYLIEPQSLFG--------MNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYM 142 (232)
T ss_dssp ----EEEEESSEEECGGGGSS--------SCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHH
T ss_pred ----EEEccCCCeeeehHHhC--------CCCCCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHH
Confidence 78999999999998752 1123788999999999999999999999998 88776554
No 32
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.47 E-value=3.5e-13 Score=131.02 Aligned_cols=121 Identities=17% Similarity=0.131 Sum_probs=105.0
Q ss_pred HHhccCcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCccccccc
Q 007183 439 DLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISR 518 (614)
Q Consensus 439 ~~l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~ 518 (614)
++++++|+|.+++++.++.+...++.+.|++|++|+++||.++.+|||.+|.|+++..+ .+|.+..
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~--~~G~~~~------------ 68 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILS--DEGREIT------------ 68 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEEC--TTSCEEE------------
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEEC--CCCCEEE------------
Confidence 57889999999999999999999999999999999999999999999999999999854 4555443
Q ss_pred ceecCCCCe--eechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHHhHhh
Q 007183 519 KDHLADGDF--WGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 582 (614)
Q Consensus 519 ~~~l~~G~~--FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~~~r 582 (614)
+..+++|++ ||+.+++. ..++.++++|.++|+++.+++++|.+++.+ |.+...+.
T Consensus 69 ~~~~~~G~~~~~g~~~~~~---------~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~ 126 (220)
T 3dv8_A 69 LYRLFDMDMCLLSASCIMR---------SIQFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTN 126 (220)
T ss_dssp EEEECTTCEESGGGGGGCT---------TCCCCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHH
T ss_pred EEecCCCCeeehhHHHHhC---------CCCCceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHH
Confidence 789999999 78887752 125788999999999999999999999999 88876654
No 33
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.47 E-value=2.4e-13 Score=132.80 Aligned_cols=122 Identities=15% Similarity=0.195 Sum_probs=106.3
Q ss_pred HHHhccCcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccc
Q 007183 438 LDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFIS 517 (614)
Q Consensus 438 ~~~l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~ 517 (614)
.+.++++++|.+++++.++.++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+ .+|.+..
T Consensus 8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~--~~G~~~~----------- 74 (227)
T 3dkw_A 8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLT--PEGQEKI----------- 74 (227)
T ss_dssp HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCC--GGGCCBC-----------
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEEC--CCCCEEE-----------
Confidence 467899999999999999999999999999999999999999999999999999998843 3444433
Q ss_pred cceecCCCCeeechhhHhhhccCcCCCCCC-ccceEEEcceEEEEEeCHhhHHHHhhh-HHHHhHhh
Q 007183 518 RKDHLADGDFWGEELVAWVLRDRSLSNIPM-STRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 582 (614)
Q Consensus 518 ~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~-r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~~~r 582 (614)
+..+++|++||+.+++.+ .+ +.++++|.++|+++.+++++|.+++++ |.+...+.
T Consensus 75 -~~~~~~g~~~G~~~~~~~---------~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~ 131 (227)
T 3dkw_A 75 -LEVTNERNTFAEAMMFMD---------TPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALL 131 (227)
T ss_dssp -CCEECTTEEESCTTTTTT---------CSBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHH
T ss_pred -EEEcCCCCEeeeHHhcCC---------CCCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHH
Confidence 788999999999977521 14 788999999999999999999999999 88776543
No 34
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.45 E-value=4.1e-13 Score=131.85 Aligned_cols=117 Identities=15% Similarity=0.201 Sum_probs=100.1
Q ss_pred cCcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceec
Q 007183 443 NVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHL 522 (614)
Q Consensus 443 ~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l 522 (614)
++|+|.+++++.++.++..++.+.|.+||+|+++||.++.+|||.+|.|+++..+ .+|.+.. +..+
T Consensus 14 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~--~~g~~~~------------~~~~ 79 (232)
T 2gau_A 14 LRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREG--VYGRFHI------------SRIV 79 (232)
T ss_dssp SHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-------CCCE------------EEEE
T ss_pred ccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEEC--CCCCEEE------------EEEe
Confidence 5789999999999999999999999999999999999999999999999999743 3455443 7899
Q ss_pred CCCCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHHhHhh
Q 007183 523 ADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 582 (614)
Q Consensus 523 ~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~~~r 582 (614)
++|++||+.+++.+ .++.++++|.++|+++.+++++|.+++++ |.+...+.
T Consensus 80 ~~G~~~G~~~~~~~---------~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~ 131 (232)
T 2gau_A 80 KPGQFFGMRPYFAE---------ETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFL 131 (232)
T ss_dssp CTTCEESHHHHHHT---------SCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHH
T ss_pred CCCCEeeeehhhCC---------CCcceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHH
Confidence 99999999988631 14778999999999999999999999998 77775544
No 35
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.44 E-value=1e-12 Score=133.61 Aligned_cols=122 Identities=17% Similarity=0.280 Sum_probs=105.0
Q ss_pred HHHHHHhccCcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCc-ccccccCcc
Q 007183 435 ELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSA-NTSHSRDNS 513 (614)
Q Consensus 435 ~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~-~~~~~~~n~ 513 (614)
.....++.++++|.++++..+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++... .+|++ ..
T Consensus 153 ~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~--~~~~~~~~------- 223 (291)
T 2qcs_B 153 KMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRR--SENEEFVE------- 223 (291)
T ss_dssp HHHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEEC--STTSCEEE-------
T ss_pred HHHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEec--CCCCccEE-------
Confidence 344567888999999999999999999999999999999999999999999999999998742 23322 22
Q ss_pred cccccceecCCCCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHHh
Q 007183 514 KFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVAS 579 (614)
Q Consensus 514 ~~~~~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~ 579 (614)
+..+++|++|||.+++. ..+|+++++|.++|+++.|++++|.+++.+ |.+.+
T Consensus 224 -----~~~l~~G~~fGe~~ll~---------~~~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~ 276 (291)
T 2qcs_B 224 -----VGRLGPSDYFGEIALLM---------NRPKAATVVARGPLKCVKLDRPRFERVLGPCSDILK 276 (291)
T ss_dssp -----EEEECTTCEECSGGGTC---------CCCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHT
T ss_pred -----EEEeCCCCEecHHHHcC---------CCCcceEEEECCcEEEEEEcHHHHHHHhccHHHHHH
Confidence 78999999999998862 125889999999999999999999999999 77654
No 36
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.43 E-value=5.2e-13 Score=136.51 Aligned_cols=126 Identities=23% Similarity=0.341 Sum_probs=107.7
Q ss_pred HHHHHHhccCcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCccc
Q 007183 435 ELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSK 514 (614)
Q Consensus 435 ~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~ 514 (614)
..+...++++++|.+++++.+..++..++.+.|.+|++|+++||.++.+|+|.+|.|+++..+. .+|.+..
T Consensus 153 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~-~~g~~~~-------- 223 (299)
T 3shr_A 153 TEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDS-PNEDPVF-------- 223 (299)
T ss_dssp HHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCS-SSCCCEE--------
T ss_pred HHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecC-CCCcceE--------
Confidence 4567788999999999999999999999999999999999999999999999999999998420 1233322
Q ss_pred ccccceecCCCCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHHhHhh
Q 007183 515 FISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 582 (614)
Q Consensus 515 ~~~~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~~~r 582 (614)
+..+++|++|||.+++.+ .+|+++++|.++|+++.|++++|.+++.+ |++...+.
T Consensus 224 ----~~~l~~G~~fGe~~ll~~---------~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~ 279 (299)
T 3shr_A 224 ----LRTLGKGDWFGEKALQGE---------DVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAY 279 (299)
T ss_dssp ----EEEEETTCEECGGGGSSS---------EECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHH
T ss_pred ----EEEcCCCCEeChHHHhCC---------CCcceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHH
Confidence 789999999999988631 25889999999999999999999999999 77765444
No 37
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.43 E-value=1.2e-12 Score=128.13 Aligned_cols=115 Identities=16% Similarity=0.219 Sum_probs=91.3
Q ss_pred HHHhccCcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccc
Q 007183 438 LDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFIS 517 (614)
Q Consensus 438 ~~~l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~ 517 (614)
...+++.++|.+++++.++.++..++.+.|.+|++|+++||.++.+|||.+|.|+++..+ .+|.+..
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~--~~G~~~~----------- 76 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEE--DDDRELV----------- 76 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEEC--TTSCEEE-----------
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEEC--CCCCEEE-----------
Confidence 457788999999999999999999999999999999999999999999999999999854 4555543
Q ss_pred cceecCCCCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh
Q 007183 518 RKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE 574 (614)
Q Consensus 518 ~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~ 574 (614)
+..+++|++||+.+++.. .++++++++|.++|+++.+++++|.+++++
T Consensus 77 -~~~~~~g~~~G~~~~~~~--------~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~ 124 (230)
T 3iwz_A 77 -LGYFGSGEFVGEMGLFIE--------SDTREVILRTRTQCELAEISYERLQQLFQT 124 (230)
T ss_dssp -EEEECTTCEESCGGGTSC--------CSBCCSEEEESSCEEEEEEEHHHHHHHHHT
T ss_pred -EEEecCCCEEEehhhhcC--------CCCceeEEEEcCcEEEEEEeHHHHHHHHHH
Confidence 789999999999987621 125778999999999999999999999876
No 38
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.42 E-value=5.8e-13 Score=142.87 Aligned_cols=126 Identities=17% Similarity=0.270 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHhccCcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCccccc
Q 007183 429 RRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSH 508 (614)
Q Consensus 429 r~ei~~~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~ 508 (614)
|.+-..+...+.++++++|++++++.+..|+..++.+.|.+|++|+++||.++.+|||.+|.|+++.. .+|....
T Consensus 135 ks~~~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~---~~G~~~~-- 209 (416)
T 3tnp_B 135 KTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVK---CDGVGRC-- 209 (416)
T ss_dssp CCHHHHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEE---CSSCEEE--
T ss_pred CCHHHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEe---cCCCEEE--
Confidence 34445566788999999999999999999999999999999999999999999999999999999873 3554433
Q ss_pred ccCcccccccceecCCCCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHH
Q 007183 509 SRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVA 578 (614)
Q Consensus 509 ~~~n~~~~~~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~ 578 (614)
+..+++|++|||.+++.+ .+|+++++|.++|+++.|++++|.+++.+ |...
T Consensus 210 ----------v~~l~~G~~fGe~all~~---------~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~ 261 (416)
T 3tnp_B 210 ----------VGNYDNRGSFGELALMYN---------TPKAATITATSPGALWGLDRVTFRRIIVKNNAKK 261 (416)
T ss_dssp ----------EEEEESCCEECGGGGTSC---------CCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHH
T ss_pred ----------EEEecCCCEEeeHHHhcC---------CCcccEEEEccCeEEEEEeehhhhhhhhcchhHH
Confidence 789999999999988631 26899999999999999999999999998 5554
No 39
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.41 E-value=8.6e-13 Score=134.13 Aligned_cols=119 Identities=18% Similarity=0.291 Sum_probs=104.8
Q ss_pred HHHHHHHHhccCcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCc
Q 007183 433 KRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDN 512 (614)
Q Consensus 433 ~~~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n 512 (614)
..+...+.++++++|++++++.+..++..++.+.|.+|++|+++||.++.+|+|.+|.|+++. +|..
T Consensus 33 ~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-----~g~~-------- 99 (291)
T 2qcs_B 33 TMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV-----NNEW-------- 99 (291)
T ss_dssp HHHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE-----TTEE--------
T ss_pred HHHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE-----CCeE--------
Confidence 345567889999999999999999999999999999999999999999999999999999988 3422
Q ss_pred ccccccceecCCCCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHHh
Q 007183 513 SKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVAS 579 (614)
Q Consensus 513 ~~~~~~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~ 579 (614)
+..+++|++|||.+++.+ .+|+++++|.++|+++.|++++|.+++.+ |.+..
T Consensus 100 ------~~~l~~G~~fGe~~l~~~---------~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~ 152 (291)
T 2qcs_B 100 ------ATSVGEGGSFGELALIYG---------TPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKR 152 (291)
T ss_dssp ------EEEECTTCEECGGGGTCC---------CBCSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred ------EEEcCCCCccchHHHhcC---------CCCceEEEECCCEEEEEEEhHHHHHHHhhhHHHHH
Confidence 789999999999987631 25889999999999999999999999988 55543
No 40
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.41 E-value=5.4e-13 Score=120.62 Aligned_cols=59 Identities=8% Similarity=0.341 Sum_probs=54.6
Q ss_pred hHHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007183 313 QKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKA 371 (614)
Q Consensus 313 ~~Yl~SlYwa~~TmtTvGyGdi~p~~~~E~i~~i~~ml~G~~~fa~iig~i~~il~~~~ 371 (614)
..|..|+||+++|+|||||||++|.|..+++++++.+++|+++++++++.+++.+.+..
T Consensus 39 ~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~ 97 (139)
T 3eff_K 39 ITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGRE 97 (139)
T ss_dssp CCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHH
T ss_pred CCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788999999999999999999999999999999999999999999999998776543
No 41
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.40 E-value=9.9e-13 Score=143.22 Aligned_cols=137 Identities=17% Similarity=0.189 Sum_probs=117.4
Q ss_pred cCChHHHHHHHHHHHHHHhccCcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCC
Q 007183 423 ILPKELRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNG 502 (614)
Q Consensus 423 ~Lp~~Lr~ei~~~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g 502 (614)
..|+..|.+-..+...+.++++++|++++++.+..++..++.+.|.+|++|+++||.++.+|+|.+|.|+++..+ .+|
T Consensus 26 ~~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~--~~g 103 (469)
T 1o7f_A 26 DKRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSE--TSS 103 (469)
T ss_dssp TSCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECS--SSC
T ss_pred cCChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEec--CCC
Confidence 357888888888888999999999999999999999999999999999999999999999999999999999843 344
Q ss_pred CcccccccCcccccccceecCCCCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHHhHh
Q 007183 503 SANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASST 581 (614)
Q Consensus 503 ~~~~~~~~~n~~~~~~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~~~ 581 (614)
.... ..+..+++|++||+.+ +.+ .+++++++|.++|+++.|++++|.+++.+ |.+...+
T Consensus 104 ~~~~----------~~~~~~~~G~~fGe~~-l~~---------~~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~~~l 163 (469)
T 1o7f_A 104 HQDA----------VTICTLGIGTAFGESI-LDN---------TPRHATIVTRESSELLRIEQEDFKALWEKYRQYMAGL 163 (469)
T ss_dssp GGGC----------EEEEEECTTCEECGGG-GGT---------CBCSSEEEESSSEEEEEEEHHHHHHHHHHHGGGTTTT
T ss_pred CCcc----------eEEEEccCCCCcchhh-hCC---------CCccceEEEccceeEEEEcHHHHHHHHHhCHHHHHHH
Confidence 2100 1178999999999997 531 25889999999999999999999999998 7765444
No 42
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.38 E-value=1.2e-12 Score=138.94 Aligned_cols=123 Identities=15% Similarity=0.262 Sum_probs=105.8
Q ss_pred HHHHHHhccCcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCccc
Q 007183 435 ELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSK 514 (614)
Q Consensus 435 ~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~ 514 (614)
.++..+++++++|.++++..+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++..+ .+|++..
T Consensus 244 ~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~--~~~~~~~-------- 313 (381)
T 4din_B 244 KMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRR--SPNEEYV-------- 313 (381)
T ss_dssp HHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCS--SSSSCCC--------
T ss_pred HHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEec--CCCCceE--------
Confidence 455678889999999999999999999999999999999999999999999999999999842 2333211
Q ss_pred ccccceecCCCCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHHh
Q 007183 515 FISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVAS 579 (614)
Q Consensus 515 ~~~~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~ 579 (614)
.+..+++|++|||.+++.+ .+|+++++|.++|+++.|++++|.+++.. |++.+
T Consensus 314 ---~v~~l~~Gd~fGe~all~~---------~~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~ 367 (381)
T 4din_B 314 ---EVGRLGPSDYFGEIALLLN---------RPRAATVVARGPLKCVKLDRPRFERVLGPCSEILK 367 (381)
T ss_dssp ---EEEEECTTCEECTTGGGSC---------CBCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHH
T ss_pred ---EEEEeCCCCEechHHHhCC---------CCceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHH
Confidence 1788999999999988631 26889999999999999999999999999 76654
No 43
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.37 E-value=8.3e-13 Score=140.08 Aligned_cols=120 Identities=14% Similarity=0.253 Sum_probs=105.6
Q ss_pred HHHHHHHHHHhccCcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCccccccc
Q 007183 431 NIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSR 510 (614)
Q Consensus 431 ei~~~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~ 510 (614)
+-..+...+.++++++|++++++.+..|+..++.+.|.+|++|+++||.++.+|+|.+|.|+++. +|..
T Consensus 122 ~~~~~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~-----~~~~------ 190 (381)
T 4din_B 122 YKTMTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV-----NGEW------ 190 (381)
T ss_dssp HHHHHHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE-----TTEE------
T ss_pred HHHHHHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE-----CCeE------
Confidence 33445567899999999999999999999999999999999999999999999999999999997 3322
Q ss_pred CcccccccceecCCCCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHH
Q 007183 511 DNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVA 578 (614)
Q Consensus 511 ~n~~~~~~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~ 578 (614)
+..+++|++|||.+++.+ .+|+++++|.++|+++.|++++|.+++.+ |..+
T Consensus 191 --------v~~l~~G~~fGe~all~~---------~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~ 242 (381)
T 4din_B 191 --------VTNISEGGSFGELALIYG---------TPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRK 242 (381)
T ss_dssp --------EEEEESSCCBCGGGGTSC---------CBCSSEEEESSSCEEEEEEHHHHHHHHHHHHHHH
T ss_pred --------eeeCCCCCEEEchHHhcC---------CCcceEEEECCCEEEEEEchHHHHHhhhhhhHHH
Confidence 678999999999988631 25889999999999999999999999988 5544
No 44
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.37 E-value=3.8e-12 Score=122.65 Aligned_cols=116 Identities=15% Similarity=0.149 Sum_probs=96.7
Q ss_pred cccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCC
Q 007183 445 KEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLAD 524 (614)
Q Consensus 445 ~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~ 524 (614)
++++.+|++.++.++..++.+.|.+|++|+++|+.++.+|||.+|.|+++..+ .+|.+.. +..+++
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~--~~g~~~~------------~~~~~~ 67 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKD--EEGKEMI------------LSYLNQ 67 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEEC--TTCCEEE------------EEEEET
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEEC--CCCCEEE------------EEEcCC
Confidence 45677999999999999999999999999999999999999999999999854 4555543 788999
Q ss_pred CCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHHhHhh
Q 007183 525 GDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 582 (614)
Q Consensus 525 G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~~~r 582 (614)
|++||+.+++.+ .+++.++++|.++|+++.+++++|.+++++ |.+...+.
T Consensus 68 g~~~G~~~~~~~--------~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~ 118 (210)
T 3ryp_A 68 GDFIGELGLFEE--------GQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLS 118 (210)
T ss_dssp TCEESCTTTTST--------TCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHH
T ss_pred CCEeeeHHHhcC--------CCCceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHH
Confidence 999999987631 124788999999999999999999999999 87776543
No 45
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.36 E-value=4.4e-12 Score=121.93 Aligned_cols=114 Identities=18% Similarity=0.228 Sum_probs=95.0
Q ss_pred ccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeee
Q 007183 450 LDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 529 (614)
Q Consensus 450 ~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FG 529 (614)
+|++.++.++..++.+.|.+|++|+++|+.++.+|||.+|.|+++..+ .+|.+.. +..+++|++||
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~--~~G~~~~------------~~~~~~g~~~G 66 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIED--DDGREMI------------IGYLNSGDFFG 66 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEEC--TTSCEEE------------EEEEETTCEES
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEEC--CCCCEEE------------EEEcCCCCCcc
Confidence 578899999999999999999999999999999999999999999754 4555543 78999999999
Q ss_pred chhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHHhHhh
Q 007183 530 EELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 582 (614)
Q Consensus 530 e~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~~~r 582 (614)
+.+++.+.. ..+++.++++|.++|+++.+++++|.+++++ |.+...+.
T Consensus 67 ~~~~~~~~~-----~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~ 115 (207)
T 2oz6_A 67 ELGLFEKEG-----SEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLG 115 (207)
T ss_dssp CTTTCC----------CBCCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHH
T ss_pred cHHHhcCCC-----CCCCcceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHH
Confidence 997752110 0004778999999999999999999999998 88776443
No 46
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.35 E-value=2.4e-12 Score=138.07 Aligned_cols=119 Identities=13% Similarity=0.226 Sum_probs=101.4
Q ss_pred HHHhccCcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCC------CCcccccccC
Q 007183 438 LDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTN------GSANTSHSRD 511 (614)
Q Consensus 438 ~~~l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~------g~~~~~~~~~ 511 (614)
..+++++++|..+++..+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++..+ .+ |....
T Consensus 266 ~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~--~~~~~~~~g~~~~----- 338 (416)
T 3tnp_B 266 ESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKR--KGKSEVEENGAVE----- 338 (416)
T ss_dssp SSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC--------------CE-----
T ss_pred HHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEec--CCcccccCCceeE-----
Confidence 346677899999999999999999999999999999999999999999999999999742 11 22222
Q ss_pred cccccccceecCCCCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHHh
Q 007183 512 NSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVAS 579 (614)
Q Consensus 512 n~~~~~~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~ 579 (614)
+..+++|++|||.+++. ..+|+++++|.++|+++.|++++|.+++.. |++.+
T Consensus 339 -------l~~l~~G~~fGE~all~---------~~~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~ 391 (416)
T 3tnp_B 339 -------IARCFRGQYFGELALVT---------NKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMK 391 (416)
T ss_dssp -------EEEECTTCEESGGGGTC---------CSCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHT
T ss_pred -------EEEeCCCCEecHHHHhC---------CCCceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHH
Confidence 78999999999998862 125899999999999999999999999999 77654
No 47
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.35 E-value=3e-12 Score=152.31 Aligned_cols=137 Identities=18% Similarity=0.216 Sum_probs=109.3
Q ss_pred HhhcCChHHHHHHHHHHHHHHhccCcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeecc
Q 007183 420 SLSILPKELRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKER 499 (614)
Q Consensus 420 il~~Lp~~Lr~ei~~~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~ 499 (614)
.|+.-| .-|.+=-.+.-.+.|+++++|+++++..+.+||..|+.+.|.+|++|+++||.++++|+|.+|.|+|+..+..
T Consensus 24 ~L~K~p-~~Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~ 102 (999)
T 4f7z_A 24 CLDKRP-LERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETS 102 (999)
T ss_dssp HHHSCS-SSCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSS
T ss_pred HhcCCc-ccCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCC
Confidence 344433 4454333345567889999999999999999999999999999999999999999999999999999984311
Q ss_pred CCCCcccccccCcccccccceecCCCCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHH
Q 007183 500 TNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVA 578 (614)
Q Consensus 500 ~~g~~~~~~~~~n~~~~~~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~ 578 (614)
.++... .+..+++|++||| +++.+ .+|++|++|.++|++++|++++|..++.. |+..
T Consensus 103 ~~~~~~------------~v~~l~~G~sFGE-all~n---------~pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~~ 160 (999)
T 4f7z_A 103 SHQDAV------------TICTLGIGTAFGE-SILDN---------TPRHATIVTRESSELLRIEQEDFKALWEKYRQYM 160 (999)
T ss_dssp CTTSCE------------EEEEEETTCEECG-GGGGT---------CCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHH
T ss_pred CCCCce------------eEEEecCCcchhh-hhccC---------CCcceEEEeccceEEEEEEHHHHHHHHHhChHHH
Confidence 112221 2789999999999 66532 16999999999999999999999999987 5544
Q ss_pred h
Q 007183 579 S 579 (614)
Q Consensus 579 ~ 579 (614)
.
T Consensus 161 ~ 161 (999)
T 4f7z_A 161 A 161 (999)
T ss_dssp T
T ss_pred H
Confidence 3
No 48
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.33 E-value=2.8e-12 Score=124.83 Aligned_cols=113 Identities=12% Similarity=0.191 Sum_probs=99.4
Q ss_pred HHhccCcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCccccccc
Q 007183 439 DLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISR 518 (614)
Q Consensus 439 ~~l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~ 518 (614)
.+++++++|.+++++.++.++..++.+.|.+|++|+++||.++.+|||.+|.|+++. + .+|.+..
T Consensus 4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-~--~~G~~~~------------ 68 (220)
T 2fmy_A 4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYL-A--YEDKEFT------------ 68 (220)
T ss_dssp TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEE-E--CSSCEEE------------
T ss_pred hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEE-C--CCCCEEE------------
Confidence 357889999999999999999999999999999999999999999999999999963 2 4555543
Q ss_pred ceecCCCCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHHhHhh
Q 007183 519 KDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 582 (614)
Q Consensus 519 ~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~~~r 582 (614)
+..+++|++||+. +.++++|.++|+++.+++++|.+++++ |.+...+.
T Consensus 69 ~~~~~~G~~~G~~----------------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~ 117 (220)
T 2fmy_A 69 LAILEAGDIFCTH----------------TRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMV 117 (220)
T ss_dssp EEEEETTCEEESC----------------SSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHH
T ss_pred EEEcCCCCEeCCc----------------cceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHH
Confidence 7899999999991 567999999999999999999999998 77776554
No 49
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.33 E-value=9.8e-12 Score=108.02 Aligned_cols=58 Identities=16% Similarity=0.297 Sum_probs=52.8
Q ss_pred HHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 007183 315 FLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKAT 372 (614)
Q Consensus 315 Yl~SlYwa~~TmtTvGyGdi~p~~~~E~i~~i~~ml~G~~~fa~iig~i~~il~~~~~ 372 (614)
|..|+||+++|+|||||||++|.|..+++++++.+++|+.++++.++.+++.++....
T Consensus 50 ~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~ 107 (114)
T 2q67_A 50 PIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSI 107 (114)
T ss_dssp HHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999999855443
No 50
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.32 E-value=5.1e-12 Score=137.59 Aligned_cols=121 Identities=16% Similarity=0.174 Sum_probs=101.6
Q ss_pred HHHHHHhccCcccccccHHHHHHHhhhccc-eeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcc
Q 007183 435 ELCLDLLKNVKEFKTLDEEVLDALCDCVKP-AFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNS 513 (614)
Q Consensus 435 ~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~-~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~ 513 (614)
+...+.+.++++|.+++++.+..++..++. +.|.+|++|+++||.++.+|||.+|.|+++. ++.. .
T Consensus 333 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~-----~~~~-~------- 399 (469)
T 1o7f_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVI-----YGKG-V------- 399 (469)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEE-----TTTE-E-------
T ss_pred HHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEE-----cCCe-e-------
Confidence 345677899999999999999999999985 4899999999999999999999999999998 2222 2
Q ss_pred cccccceecCCCCeeechhhHhhhccCcCCCCCCccceEEEcc-eEEEEEeCHhhHHHHhhh-HHHHhHhh
Q 007183 514 KFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALK-NVEAFGLMAHDLKHVFIE-HQVASSTE 582 (614)
Q Consensus 514 ~~~~~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~-~~~l~~Ls~~df~~ll~~-~~l~~~~r 582 (614)
+..+++|++|||.+++. ..+|+++++|.+ +|+++.|++++|.+++.+ |.+...+.
T Consensus 400 -----~~~l~~G~~fGe~~ll~---------~~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l~ 456 (469)
T 1o7f_A 400 -----VCTLHEGDDFGKLALVN---------DAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLK 456 (469)
T ss_dssp -----EEEEETTCEECGGGGTC---------CSCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC-----
T ss_pred -----EEEecCCCEEEEehhhc---------CCCceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHHH
Confidence 78999999999998862 125899999998 799999999999999999 77665544
No 51
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.31 E-value=3.4e-12 Score=124.43 Aligned_cols=112 Identities=12% Similarity=0.049 Sum_probs=98.4
Q ss_pred HhccCcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccc
Q 007183 440 LLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRK 519 (614)
Q Consensus 440 ~l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~ 519 (614)
+++++++|.+++++.++.++..++.+.|.+|++|+++|+.++.+|||.+|.|+++. + .+|.+.. +
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-~--~~G~~~~------------~ 65 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYL-V--GEEREIS------------L 65 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEE-E--ETTEEEE------------E
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEE-C--CCCCEEE------------E
Confidence 36789999999999999999999999999999999999999999999999999973 3 4555543 7
Q ss_pred eecCCCCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHHhHhh
Q 007183 520 DHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 582 (614)
Q Consensus 520 ~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~~~r 582 (614)
..+++|++|| . ++.++++|.++|+++.+++++|.+++.+ |.+...+.
T Consensus 66 ~~~~~G~~fG-~---------------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~ 113 (222)
T 1ft9_A 66 FYLTSGDMFC-M---------------HSGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLI 113 (222)
T ss_dssp EEEETTCEEE-S---------------CSSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHH
T ss_pred EEcCCCCEec-C---------------CCCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHH
Confidence 8999999999 1 3778999999999999999999999998 87776554
No 52
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.31 E-value=1.1e-11 Score=124.07 Aligned_cols=113 Identities=15% Similarity=0.181 Sum_probs=94.8
Q ss_pred ccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCe
Q 007183 448 KTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDF 527 (614)
Q Consensus 448 ~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~ 527 (614)
..++++.++.++..++.+.|.+|++|+++|+.++.+|||.+|.|+++..+ .+|.+.. +..+++|++
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~--~~G~e~~------------~~~~~~G~~ 120 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKD--EEGKEMI------------LSYLNQGDF 120 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEEC--TTCCEEE------------EEEEETTCE
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEEC--CCCCEEE------------EEEcCCCCE
Confidence 55899999999999999999999999999999999999999999999854 4555543 789999999
Q ss_pred eechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHHhHhh
Q 007183 528 WGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 582 (614)
Q Consensus 528 FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~~~r 582 (614)
||+.+++.+ .+++.++++|.++|+++.|++++|.+++.+ |.+...+.
T Consensus 121 ~Ge~~~~~~--------~~~~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~ 168 (260)
T 3kcc_A 121 IGELGLFEE--------GQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLS 168 (260)
T ss_dssp ESCTTTTST--------TCBCCSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHH
T ss_pred EeehHHhCC--------CCCCceEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHH
Confidence 999987631 125788999999999999999999999999 87776543
No 53
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.28 E-value=1.1e-11 Score=120.12 Aligned_cols=116 Identities=16% Similarity=0.160 Sum_probs=92.4
Q ss_pred CcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecC
Q 007183 444 VKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLA 523 (614)
Q Consensus 444 i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~ 523 (614)
-|.|...++.....+...++.+.|.+|++|+++|+.++.+|||.+|.|+++..+ .+|.+.. +..++
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~--~~G~~~~------------~~~~~ 69 (213)
T 1o5l_A 4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVS--ENGKTLE------------IDEIK 69 (213)
T ss_dssp ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEEC--TTSCEEE------------EEEEC
T ss_pred cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEEC--CCCCEEE------------EEEec
Confidence 467788888899999999999999999999999999999999999999999853 4555543 78999
Q ss_pred CCCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHHhHh
Q 007183 524 DGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASST 581 (614)
Q Consensus 524 ~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~~~ 581 (614)
+|++||+.+++.+ ..++.++++|.++|+++.+++++|.+++++ |.+...+
T Consensus 70 ~G~~~G~~~~~~~--------~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l 120 (213)
T 1o5l_A 70 PVQIIASGFIFSS--------EPRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFF 120 (213)
T ss_dssp SSEESSGGGTTSS--------SCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHH
T ss_pred CCCEeeeHHHhcC--------CCCceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHH
Confidence 9999999977521 124778999999999999999999999999 8886443
No 54
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.27 E-value=1.6e-12 Score=111.06 Aligned_cols=58 Identities=7% Similarity=0.152 Sum_probs=54.2
Q ss_pred HHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007183 314 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKA 371 (614)
Q Consensus 314 ~Yl~SlYwa~~TmtTvGyGdi~p~~~~E~i~~i~~ml~G~~~fa~iig~i~~il~~~~ 371 (614)
.|..|+||+++|||||||||++|.+..+++++++.|++|+.++++.+|.+++.+.+..
T Consensus 40 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~ 97 (103)
T 2k1e_A 40 SYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRRE 97 (103)
T ss_dssp CGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHH
T ss_pred cHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999887644
No 55
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.23 E-value=3.3e-11 Score=143.35 Aligned_cols=113 Identities=15% Similarity=0.136 Sum_probs=98.4
Q ss_pred HHHHHHhccCcccccccHHHHHHHhhhcccee-ecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcc
Q 007183 435 ELCLDLLKNVKEFKTLDEEVLDALCDCVKPAF-YFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNS 513 (614)
Q Consensus 435 ~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~-y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~ 513 (614)
+...+.+.+++.|++++....+.|+..+.... +.+|++|++|||.++.+|||.+|.|+|+. ...+.
T Consensus 333 e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~----~~~~~--------- 399 (999)
T 4f7z_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVI----YGKGV--------- 399 (999)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEE----TTTEE---------
T ss_pred HHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEE----cCCcc---------
Confidence 34567789999999999999999999999655 57799999999999999999999999987 22222
Q ss_pred cccccceecCCCCeeechhhHhhhccCcCCCCCCccceEEEcce-EEEEEeCHhhHHHHhhh
Q 007183 514 KFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKN-VEAFGLMAHDLKHVFIE 574 (614)
Q Consensus 514 ~~~~~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~-~~l~~Ls~~df~~ll~~ 574 (614)
++.+++|++|||.+++. ..||.+|++|.++ |++++++++||.+++.+
T Consensus 400 -----v~~L~~Gd~FGElALL~---------~~PR~aTV~a~~d~c~fl~i~k~df~~il~~ 447 (999)
T 4f7z_A 400 -----VCTLHEGDDFGKLALVN---------DAPRAASIVLREDNCHFLRVDKEDGNRILRD 447 (999)
T ss_dssp -----EEEEETTCEECGGGGTC---------SCBCSSEEEESSSSEEEEEEEHHHHHHHHHH
T ss_pred -----eEEecCCCcccchhhcc---------CCCeeEEEEEecCceEEEEeeHHHHHHHHhH
Confidence 78999999999999873 2269999999985 99999999999999988
No 56
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.23 E-value=2e-11 Score=121.35 Aligned_cols=116 Identities=15% Similarity=0.146 Sum_probs=97.5
Q ss_pred hccCcccccccHHHHHHHhhhccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccce
Q 007183 441 LKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKD 520 (614)
Q Consensus 441 l~~i~~F~~~s~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~ 520 (614)
+.++..+..++++.++.+...++.+.|.+|++|+++|+.++.+|||.+|.|+++..+ .+|.+.. +.
T Consensus 11 ~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~--~~G~~~~------------~~ 76 (250)
T 3e6c_C 11 CGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIF--EDGSEKL------------LY 76 (250)
T ss_dssp CCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEEC--TTSCEEE------------EE
T ss_pred hhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEEC--CCCCEEE------------EE
Confidence 344444588999999999999999999999999999999999999999999999854 4555543 78
Q ss_pred ecCCCCeeechhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHHhHhh
Q 007183 521 HLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 582 (614)
Q Consensus 521 ~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~~~r 582 (614)
.+++|++||+ ++ . .. +.++++|.++|+++.+++++|.+++.+ |.+...+.
T Consensus 77 ~~~~G~~~G~--~l---~------~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~ 127 (250)
T 3e6c_C 77 YAGGNSLIGK--LY---P------TG-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIF 127 (250)
T ss_dssp EECTTCEECC--CS---C------CS-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHH
T ss_pred EecCCCEEee--ec---C------CC-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHH
Confidence 9999999999 32 1 12 678999999999999999999999988 77765543
No 57
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.20 E-value=6.7e-11 Score=134.27 Aligned_cols=133 Identities=17% Similarity=0.171 Sum_probs=111.2
Q ss_pred hHHhhcCChHHHHHHHHHHHHHHhccCcccccccHHHHHHHhhhcc-ceeecCCcEEEecCCccCeEEEEEeeEEEEEee
Q 007183 418 ESSLSILPKELRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVK-PAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTS 496 (614)
Q Consensus 418 ~~il~~Lp~~Lr~ei~~~~~~~~l~~i~~F~~~s~~~l~~L~~~l~-~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~ 496 (614)
..++. -|+..|.+-..+...+.+.++++|.+++++.+..++..+. .+.|.+|++|+++||.++.+|||.+|.|+++.
T Consensus 12 r~iL~-k~p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~- 89 (694)
T 3cf6_E 12 RMILR-KPPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVI- 89 (694)
T ss_dssp HHHHH-SCGGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEE-
T ss_pred HHHHc-CChhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEE-
Confidence 44554 3455565555556678899999999999999999999998 78999999999999999999999999999998
Q ss_pred eccCCCCcccccccCcccccccceecCCCCeeechhhHhhhccCcCCCCCCccceEEEcc-eEEEEEeCHhhHHHHhhh-
Q 007183 497 KERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALK-NVEAFGLMAHDLKHVFIE- 574 (614)
Q Consensus 497 ~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~-~~~l~~Ls~~df~~ll~~- 574 (614)
. |. .. +..+++|++|||.+++.+ .++.++++|.+ +|+++.|++++|.+++++
T Consensus 90 ---~-g~-~i------------l~~l~~Gd~fGe~al~~~---------~~~~~tv~A~edd~~ll~I~~~~f~~ll~~~ 143 (694)
T 3cf6_E 90 ---Y-GK-GV------------VCTLHEGDDFGKLALVND---------APRAASIVLREDNCHFLRVDKEDFNRILRDV 143 (694)
T ss_dssp ---T-TT-EE------------EEEEETTCEECHHHHHHT---------CBCSSEEEECSSSEEEEEEEHHHHHHHTTTT
T ss_pred ---e-CC-EE------------EEEeCCCCEeehHHHhCC---------CCceEEEEEeeCceEEEEEeHHHHHHHHHHC
Confidence 2 32 22 789999999999988731 14788999999 599999999999999998
Q ss_pred HHHH
Q 007183 575 HQVA 578 (614)
Q Consensus 575 ~~l~ 578 (614)
|.+.
T Consensus 144 p~l~ 147 (694)
T 3cf6_E 144 EANT 147 (694)
T ss_dssp CCCC
T ss_pred HHHH
Confidence 5553
No 58
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.19 E-value=1.3e-10 Score=97.82 Aligned_cols=55 Identities=16% Similarity=0.298 Sum_probs=52.3
Q ss_pred HHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007183 315 FLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQT 369 (614)
Q Consensus 315 Yl~SlYwa~~TmtTvGyGdi~p~~~~E~i~~i~~ml~G~~~fa~iig~i~~il~~ 369 (614)
|..|+||+++|+|||||||++|.|..+++++++.+++|..+++++++.++..++.
T Consensus 33 ~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~ 87 (97)
T 3ouf_A 33 PIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL 87 (97)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 6789999999999999999999999999999999999999999999999988754
No 59
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.19 E-value=1.4e-10 Score=114.78 Aligned_cols=110 Identities=14% Similarity=0.157 Sum_probs=92.4
Q ss_pred HHHHHHHhhhcc---ceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCee
Q 007183 452 EEVLDALCDCVK---PAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFW 528 (614)
Q Consensus 452 ~~~l~~L~~~l~---~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~F 528 (614)
+++++.|..... .+.|.+||+|+++|+.++.+|||.+|.|+++..+ .+|.+.. +..+++|++|
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~--~~G~~~~------------l~~~~~g~~~ 95 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVY--EAGEEIT------------VALLRENSVF 95 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEEC--TTCCEEE------------EEEECTTCEE
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEEC--CCCCEEE------------EEEecCCCEE
Confidence 678888888888 9999999999999999999999999999999854 4555543 7899999999
Q ss_pred echhhHhhhccCcCCCCCCccceEEEcceEEEEEeCHhhHHHHhhh-HHHHhHhh
Q 007183 529 GEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 582 (614)
Q Consensus 529 Ge~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~-~~l~~~~r 582 (614)
|+.+++.+. + .++.++++|.++|+++.+++++|.+++++ |.+...+.
T Consensus 96 G~~~~~~~~---~----~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~ 143 (243)
T 3la7_A 96 GVLSLLTGN---K----SDRFYHAVAFTPVELLSAPIEQVEQALKENPELSMLML 143 (243)
T ss_dssp SCHHHHSSC---C----SBCCEEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHH
T ss_pred cchHHhCCC---C----CcceEEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHH
Confidence 999886311 0 02557999999999999999999999998 87776554
No 60
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.16 E-value=5.2e-11 Score=96.99 Aligned_cols=53 Identities=9% Similarity=0.268 Sum_probs=50.9
Q ss_pred HHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007183 315 FLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYL 367 (614)
Q Consensus 315 Yl~SlYwa~~TmtTvGyGdi~p~~~~E~i~~i~~ml~G~~~fa~iig~i~~il 367 (614)
|..|+||+++|+|||||||++|.|..+++++++.+++|..++++.++.+++.+
T Consensus 29 ~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 29 WTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67799999999999999999999999999999999999999999999999875
No 61
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.11 E-value=4.7e-12 Score=117.88 Aligned_cols=62 Identities=8% Similarity=0.325 Sum_probs=56.0
Q ss_pred hHHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Q 007183 313 QKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRP 374 (614)
Q Consensus 313 ~~Yl~SlYwa~~TmtTvGyGdi~p~~~~E~i~~i~~ml~G~~~fa~iig~i~~il~~~~~~~ 374 (614)
..|..|+||+++|+|||||||++|.|..+++++++.+++|++++++++|.+++.+.+...+.
T Consensus 66 ~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~~ 127 (166)
T 3pjs_K 66 ITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQ 127 (166)
T ss_dssp CSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHHH
T ss_pred CCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677999999999999999999999999999999999999999999999999887655433
No 62
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.10 E-value=7.6e-10 Score=108.98 Aligned_cols=111 Identities=14% Similarity=0.135 Sum_probs=89.1
Q ss_pred cccHHHHHHHhh--hccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCC
Q 007183 449 TLDEEVLDALCD--CVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGD 526 (614)
Q Consensus 449 ~~s~~~l~~L~~--~l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~ 526 (614)
+++++.+..++. .++.+.|.+|++|+++||.++.+|||.+|.|+++..+ .+|.+.. +..+ +|+
T Consensus 3 ~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~--~~G~e~~------------~~~~-~G~ 67 (238)
T 2bgc_A 3 NAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSIS--ENGTIMN------------LQYY-KGA 67 (238)
T ss_dssp -CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEEC--TTSCEEE------------EEEE-ESS
T ss_pred CCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEEC--CCCCEEE------------EEEc-CCC
Confidence 578888888885 5999999999999999999999999999999999854 4555443 6777 999
Q ss_pred eeechhhHhhhccCcCCCCCC-ccceEEEc-ceEEEEEeCHhhHHHHhhh-HHHHhHhh
Q 007183 527 FWGEELVAWVLRDRSLSNIPM-STRSVQAL-KNVEAFGLMAHDLKHVFIE-HQVASSTE 582 (614)
Q Consensus 527 ~FGe~~ll~~l~~~~~~~~~~-r~~tv~A~-~~~~l~~Ls~~df~~ll~~-~~l~~~~r 582 (614)
+||+.+++.+ .++ +..++.|. ++|+++.+++++|.+++.+ |.+...+.
T Consensus 68 ~~Ge~~~~~~--------~~~~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~ 118 (238)
T 2bgc_A 68 FVIMSGFIDT--------ETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVF 118 (238)
T ss_dssp EEEESBCTTT--------CCBSCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHH
T ss_pred EecchhhhcC--------CCcCcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHH
Confidence 9999977521 111 24577787 5999999999999999988 77775544
No 63
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=98.98 E-value=4e-10 Score=114.51 Aligned_cols=61 Identities=7% Similarity=-0.033 Sum_probs=48.4
Q ss_pred hhHHHHHHHHhhhhcccccCC-Ccc-CCChhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 007183 312 PQKFLHCFRWGLRNLSCFGQN-LQT-SSNAWE----NFFVILVTISGLVLMLFLIGNIQIYLQTKAT 372 (614)
Q Consensus 312 ~~~Yl~SlYwa~~TmtTvGyG-di~-p~~~~E----~i~~i~~ml~G~~~fa~iig~i~~il~~~~~ 372 (614)
+..+..|+||++.|+||+||| |+. |.+... ..+++++++.|.++.+..+|.+.+-+++...
T Consensus 178 F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~ 244 (285)
T 3rvy_A 178 FGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQ 244 (285)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678999999999999999 985 765543 8899999999999999999999887766544
No 64
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.97 E-value=1.5e-09 Score=110.32 Aligned_cols=58 Identities=14% Similarity=0.221 Sum_probs=53.5
Q ss_pred hHHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007183 313 QKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTK 370 (614)
Q Consensus 313 ~~Yl~SlYwa~~TmtTvGyGdi~p~~~~E~i~~i~~ml~G~~~fa~iig~i~~il~~~ 370 (614)
..|..|+|||++|||||||||++|.+...++++++.+++|++++|+++|.+.+.+...
T Consensus 81 ~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~~ 138 (301)
T 1xl4_A 81 GSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRP 138 (301)
T ss_dssp TCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3478899999999999999999999999999999999999999999999988887653
No 65
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=98.96 E-value=2.4e-09 Score=101.87 Aligned_cols=81 Identities=17% Similarity=0.256 Sum_probs=69.7
Q ss_pred eeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeeechhhHhhhccCcCCC
Q 007183 465 AFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSN 544 (614)
Q Consensus 465 ~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FGe~~ll~~l~~~~~~~ 544 (614)
+.|.+|++|+++|+.++.+|||.+|.|+++..+ .+|.+.. +..+++|++||+ +++.+
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~--~~g~~~~------------~~~~~~G~~~Ge-~~~~~-------- 58 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELL--PDGRLIT------------LRHVLPGDYFGE-EALEG-------- 58 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEEC--TTSCEEE------------EEEECTTCEECG-GGGTC--------
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEEC--CCCCEEE------------EEEecCCCEech-hhhCC--------
Confidence 578999999999999999999999999999853 4555443 789999999999 88621
Q ss_pred CCCccceEEEcceEEEEEeCHhhHH
Q 007183 545 IPMSTRSVQALKNVEAFGLMAHDLK 569 (614)
Q Consensus 545 ~~~r~~tv~A~~~~~l~~Ls~~df~ 569 (614)
.++.++++|.++|+++.+++++|.
T Consensus 59 -~~~~~~~~A~~~~~v~~i~~~~~~ 82 (195)
T 3b02_A 59 -KAYRYTAEAMTEAVVQGLEPRAMD 82 (195)
T ss_dssp -SBCSSEEEESSSEEEEEECGGGCC
T ss_pred -CCceeEEEECCcEEEEEEcHHHcC
Confidence 157889999999999999999997
No 66
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.93 E-value=1e-09 Score=112.67 Aligned_cols=59 Identities=12% Similarity=0.201 Sum_probs=54.9
Q ss_pred HHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 007183 314 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKAT 372 (614)
Q Consensus 314 ~Yl~SlYwa~~TmtTvGyGdi~p~~~~E~i~~i~~ml~G~~~fa~iig~i~~il~~~~~ 372 (614)
.|..|+||+++|||||||||++|.+..+++++++.|++|++++|+++|.+.+.+.....
T Consensus 96 s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~~ 154 (333)
T 1p7b_A 96 GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPRA 154 (333)
T ss_dssp STHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred cHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999998876543
No 67
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.91 E-value=2.9e-09 Score=107.77 Aligned_cols=56 Identities=14% Similarity=0.202 Sum_probs=54.1
Q ss_pred HHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007183 314 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQT 369 (614)
Q Consensus 314 ~Yl~SlYwa~~TmtTvGyGdi~p~~~~E~i~~i~~ml~G~~~fa~iig~i~~il~~ 369 (614)
.|..|+||+++|||||||||++|.|...++++++.+++|+.+++++++.+++.+.+
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~ 170 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGS 170 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999998865
No 68
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=98.79 E-value=1.1e-08 Score=97.73 Aligned_cols=87 Identities=16% Similarity=0.175 Sum_probs=70.2
Q ss_pred HhhhccceeecCCcEEEecCCcc--CeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeeechhhHh
Q 007183 458 LCDCVKPAFYFKHTHIVLEGDPI--YEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAW 535 (614)
Q Consensus 458 L~~~l~~~~y~~ge~I~~~G~~~--~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FGe~~ll~ 535 (614)
|...++.+.|.+|++|+++||.+ +.+|||.+|.|+++..+ .+|.+.. +..+++|++||+ +++.
T Consensus 1 l~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~--~~G~~~~------------~~~~~~g~~~G~-~~l~ 65 (202)
T 2zcw_A 1 MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVD--EEGNALT------------LRLVRPGGFFGE-EALF 65 (202)
T ss_dssp -----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEEC--TTSCEEE------------EEEECTTCEECT-HHHH
T ss_pred CCccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEEC--CCCcEEE------------EEEecCCCEeee-hhcC
Confidence 35678899999999999999999 99999999999999854 4555543 789999999999 7653
Q ss_pred hhccCcCCCCCCccceEEEcceEEEEEeCHhhHH
Q 007183 536 VLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLK 569 (614)
Q Consensus 536 ~l~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~ 569 (614)
+ .++.++++|.++|+++.+ +++|.
T Consensus 66 ~---------~~~~~~~~A~~~~~v~~i-~~~~~ 89 (202)
T 2zcw_A 66 G---------QERIYFAEAATDVRLEPL-PENPD 89 (202)
T ss_dssp T---------CCBCSEEEESSCEEEEEC-CSSCC
T ss_pred C---------CCcceEEEEcccEEEEEE-hHhcC
Confidence 1 147789999999999999 98875
No 69
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.76 E-value=9.6e-09 Score=105.12 Aligned_cols=59 Identities=14% Similarity=0.234 Sum_probs=54.8
Q ss_pred HHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 007183 314 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKAT 372 (614)
Q Consensus 314 ~Yl~SlYwa~~TmtTvGyGdi~p~~~~E~i~~i~~ml~G~~~fa~iig~i~~il~~~~~ 372 (614)
.|..|+|||++|||||||||++|.+...++++++.|++|++++|+++|.+.+.+.....
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~~ 136 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPKK 136 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47789999999999999999999999999999999999999999999999998876543
No 70
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.62 E-value=1.7e-08 Score=102.05 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=54.8
Q ss_pred HHHHHHHhhhhcccccCCCccCCChhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Q 007183 315 FLHCFRWGLRNLSCFGQNLQTSSNAWEN------FFVILVTISGLVLMLFLIGNIQIYLQTKATRP 374 (614)
Q Consensus 315 Yl~SlYwa~~TmtTvGyGdi~p~~~~E~------i~~i~~ml~G~~~fa~iig~i~~il~~~~~~~ 374 (614)
|+.|+||+++|||||||||++|.++.++ +++++++++|+.+++++++.+++.+.....+.
T Consensus 225 ~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~~r~ 290 (309)
T 3um7_A 225 KLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSRRT 290 (309)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTC
T ss_pred HHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999886 59999999999999999999999988776544
No 71
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.61 E-value=5.2e-08 Score=97.08 Aligned_cols=56 Identities=14% Similarity=0.234 Sum_probs=52.7
Q ss_pred HHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007183 314 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQT 369 (614)
Q Consensus 314 ~Yl~SlYwa~~TmtTvGyGdi~p~~~~E~i~~i~~ml~G~~~fa~iig~i~~il~~ 369 (614)
.|..|+||+++|+|||||||++|.|+..++++++.+++|+.+++++++.+++.+..
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~ 148 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITV 148 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999876544
No 72
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.59 E-value=1.3e-07 Score=105.22 Aligned_cols=53 Identities=17% Similarity=0.339 Sum_probs=48.4
Q ss_pred HHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 007183 315 FLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGN-IQIYL 367 (614)
Q Consensus 315 Yl~SlYwa~~TmtTvGyGdi~p~~~~E~i~~i~~ml~G~~~fa~iig~-i~~il 367 (614)
|..|+||+++|||||||||++|.|..+++++++++++|++++++.++. +.+.+
T Consensus 52 ~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 105 (565)
T 4gx0_A 52 FMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMF 105 (565)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577999999999999999999999999999999999999999999988 44433
No 73
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.52 E-value=3.8e-07 Score=93.38 Aligned_cols=58 Identities=10% Similarity=0.316 Sum_probs=51.7
Q ss_pred HHHHHHHHhhhhcccccCCCccCC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007183 314 KFLHCFRWGLRNLSCFGQNLQTSS--NAWENFFVILVTISGLVLMLFLIGNIQIYLQTKA 371 (614)
Q Consensus 314 ~Yl~SlYwa~~TmtTvGyGdi~p~--~~~E~i~~i~~ml~G~~~fa~iig~i~~il~~~~ 371 (614)
.+..++|||+.|+|||||||++|. +...++++++.+++|.++.|+.+|.+.+-++.-.
T Consensus 91 sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~ 150 (340)
T 3sya_A 91 GFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPK 150 (340)
T ss_dssp STTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred CHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 356799999999999999999996 6889999999999999999999999888776544
No 74
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.46 E-value=6.7e-08 Score=96.29 Aligned_cols=55 Identities=18% Similarity=0.270 Sum_probs=50.5
Q ss_pred HHHHHHHhhhhcccccCCCccCCChh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007183 315 FLHCFRWGLRNLSCFGQNLQTSSNAW-------ENFFVILVTISGLVLMLFLIGNIQIYLQT 369 (614)
Q Consensus 315 Yl~SlYwa~~TmtTvGyGdi~p~~~~-------E~i~~i~~ml~G~~~fa~iig~i~~il~~ 369 (614)
|+.|+||++.|+|||||||++|.++. -++++++++++|..+++++++.+++++..
T Consensus 202 ~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~ 263 (280)
T 3ukm_A 202 FLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHEL 263 (280)
T ss_dssp HHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHH
T ss_pred hhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999885 49999999999999999999999987644
No 75
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.43 E-value=8.4e-07 Score=90.96 Aligned_cols=59 Identities=19% Similarity=0.402 Sum_probs=52.5
Q ss_pred HHHHHHHHhhhhcccccCCCccC--CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 007183 314 KFLHCFRWGLRNLSCFGQNLQTS--SNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKAT 372 (614)
Q Consensus 314 ~Yl~SlYwa~~TmtTvGyGdi~p--~~~~E~i~~i~~ml~G~~~fa~iig~i~~il~~~~~ 372 (614)
.+..++|||+.|+|||||||+.| .+...++++.+.+++|.++.|+.+|.+..-++.-.+
T Consensus 94 sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~~ 154 (343)
T 3spc_A 94 GFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKK 154 (343)
T ss_dssp SHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSC
T ss_pred CHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 46789999999999999999986 489999999999999999999999988887766443
No 76
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=98.35 E-value=2.7e-08 Score=103.34 Aligned_cols=57 Identities=11% Similarity=0.295 Sum_probs=50.3
Q ss_pred HHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007183 315 FLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQTKA 371 (614)
Q Consensus 315 Yl~SlYwa~~TmtTvGyGdi~p~~~~E~i~~i~~ml~G~~~fa~iig~i~~il~~~~ 371 (614)
|..|+||+++|+|||||||++|.|..+++++++++++|+++++++++.+.+.+.+..
T Consensus 46 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (336)
T 1lnq_A 46 WTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINRE 102 (336)
T ss_dssp SSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC----
T ss_pred HHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345999999999999999999999999999999999999999999999998877644
No 77
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=97.46 E-value=0.00047 Score=67.01 Aligned_cols=58 Identities=9% Similarity=0.056 Sum_probs=36.3
Q ss_pred hhHHHHHHHHhhhhcccccCCCccC----CChhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007183 312 PQKFLHCFRWGLRNLSCFGQNLQTS----SNAWE-NFFVILVTISGLVLMLFLIGNIQIYLQT 369 (614)
Q Consensus 312 ~~~Yl~SlYwa~~TmtTvGyGdi~p----~~~~E-~i~~i~~ml~G~~~fa~iig~i~~il~~ 369 (614)
++....|++|.+.++|+.|++|+.. .+..- ..|..++.+.+.++....++-+.+-.++
T Consensus 163 F~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i~lNlfiavi~~~f~~ 225 (229)
T 4dxw_A 163 WGDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSITILNLVIAILVDVVIQ 225 (229)
T ss_dssp TSSHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446789999999999999999721 12222 2334444445555566666666655544
No 78
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=95.92 E-value=0.0064 Score=54.60 Aligned_cols=48 Identities=10% Similarity=0.060 Sum_probs=38.5
Q ss_pred chhhhHHHHHHHHHHHhhhhhceeeEeecccCCceeecCHHHHHHHHHhhhcccccccccHhHH
Q 007183 105 VTATGLRSLFDFLYIFYITPQLLADLVASVNAKHEANNSLKSLMKFWLGSLFVDLPAVFPLPQL 168 (614)
Q Consensus 105 ~~~~~~~~~~d~~f~~DI~l~F~t~y~~~~~~~g~~V~d~~~Ia~~Ylk~~F~Dlls~lP~~~l 168 (614)
..+..+|.++-++|.+|.++++..+- | .++|+++..+|++|++|+...
T Consensus 52 ~~~~~id~~~~~iF~~Ey~lRl~~a~------------~----k~~f~~~~iiDllailP~~~~ 99 (147)
T 2kyh_A 52 VRLYLVDLILVIILWADYAYRAYKSG------------D----PAGYVKKTLYEIPALVPAGLL 99 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT------------C----HHHHHHHSTTTHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC------------c----HHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999987541 2 247888755999999998654
No 79
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=95.47 E-value=0.007 Score=53.30 Aligned_cols=48 Identities=10% Similarity=0.016 Sum_probs=37.9
Q ss_pred cchhhhHHHHHHHHHHHhhhhhceeeEeecccCCceeecCHHHHHHHHHhhhc-ccccccccHhHH
Q 007183 104 AVTATGLRSLFDFLYIFYITPQLLADLVASVNAKHEANNSLKSLMKFWLGSLF-VDLPAVFPLPQL 168 (614)
Q Consensus 104 ~~~~~~~~~~~d~~f~~DI~l~F~t~y~~~~~~~g~~V~d~~~Ia~~Ylk~~F-~Dlls~lP~~~l 168 (614)
...+..+|.++-++|.+|.++++..+- + .++|++ |= +|+++++|+...
T Consensus 36 ~~~l~~~d~~~~~iFt~E~~lRl~~~~------------~----~~~y~~-~niiDllailp~~~~ 84 (132)
T 1ors_C 36 LVRLYLVDLILVIILWADYAYRAYKSG------------D----PAGYVK-KTLYEIPALVPAGLL 84 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT------------S----TTTTTT-TCGGGTGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC------------C----HHHHHH-HHHHHHHHHHHHHHH
Confidence 345788999999999999999987531 1 247899 75 999999998643
No 80
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=95.15 E-value=0.015 Score=36.89 Aligned_cols=23 Identities=39% Similarity=0.348 Sum_probs=18.8
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhh
Q 007183 588 SVKDAARIIQLAWRRRYSSRNLLK 611 (614)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~ 611 (614)
...|+|+.||-||| +|.-|+.++
T Consensus 4 ~Ee~aA~vIQrA~R-~yl~rr~~~ 26 (31)
T 2l53_B 4 SEEVSAMVIQRAFR-RHLLQRSLK 26 (31)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHCT
T ss_pred HHHHHHHHHHHHHH-HHHHHHhhc
Confidence 45789999999999 888776554
No 81
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=94.84 E-value=0.016 Score=35.54 Aligned_cols=20 Identities=35% Similarity=0.433 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHhhhh
Q 007183 589 VKDAARIIQLAWRRRYSSRNL 609 (614)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~ 609 (614)
..++|+.||-||| +|.-++.
T Consensus 5 Ee~aA~vIQrA~R-~yl~~~~ 24 (27)
T 2kxw_B 5 EEVSAIVIQRAYR-RYLLKQK 24 (27)
T ss_dssp HHHHHHHHHHHHH-HHHHHSC
T ss_pred HHHHHHHHHHHHH-HHHHHhh
Confidence 4689999999999 8876654
No 82
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=66.25 E-value=3.5 Score=37.26 Aligned_cols=21 Identities=33% Similarity=0.295 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhhh
Q 007183 589 VKDAARIIQLAWRRRYSSRNLL 610 (614)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~ 610 (614)
..+||..||-||| +|+.|+..
T Consensus 129 e~~aA~~IQra~R-~~~~r~~~ 149 (168)
T 4dck_A 129 EEVSAMVIQRAFR-RHLLQRSL 149 (168)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHhccc
Confidence 4579999999999 88766544
No 83
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=62.98 E-value=8.6 Score=43.74 Aligned_cols=55 Identities=9% Similarity=0.076 Sum_probs=45.1
Q ss_pred HHHHHHHHhhhhcccccCCCccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007183 314 KFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVTISGLVLMLFLIGNIQIYLQT 369 (614)
Q Consensus 314 ~Yl~SlYwa~~TmtTvGyGdi~p~~~~E~i~~i~~ml~G~~~fa~iig~i~~il~~ 369 (614)
....++++++.+++..| ++..|.+...+++.+++++++.++.+.--+++++++..
T Consensus 563 ~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 563 GIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45678999999999888 68899999999999999999999999999999999875
No 84
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=55.54 E-value=7.6 Score=26.85 Aligned_cols=20 Identities=30% Similarity=0.308 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHHHhhhh
Q 007183 589 VKDAARIIQLAWRRRYSSRNL 609 (614)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~ 609 (614)
++.||..||..|| .|..|+.
T Consensus 27 ~~~aai~IQ~~~R-g~~~Rk~ 46 (48)
T 1n2d_C 27 KVNCATLLQAAYR-GHSIRAN 46 (48)
T ss_dssp HHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHH-hHHHHHh
Confidence 4569999999999 8877764
No 85
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=54.85 E-value=55 Score=26.80 Aligned_cols=67 Identities=16% Similarity=0.128 Sum_probs=44.8
Q ss_pred ccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeeechhhHhhhccCc
Q 007183 462 VKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRS 541 (614)
Q Consensus 462 l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FGe~~ll~~l~~~~ 541 (614)
+....+.||..+-..-...+++++|++|++++.. ++ + ...+.+|+.+=-. +
T Consensus 38 v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i-----~~-~--------------~~~l~~Gd~i~ip---------~ 88 (114)
T 3fjs_A 38 VMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGV-----DG-A--------------QRRLHQGDLLYLG---------A 88 (114)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEESCEEEEE-----TT-E--------------EEEECTTEEEEEC---------T
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEECEEEEEE-----CC-E--------------EEEECCCCEEEEC---------C
Confidence 3445678888776655556799999999999987 33 2 3578898877432 1
Q ss_pred CCCCCCccceEEEcceEEEEE
Q 007183 542 LSNIPMSTRSVQALKNVEAFG 562 (614)
Q Consensus 542 ~~~~~~r~~tv~A~~~~~l~~ 562 (614)
....++++.+++.++.
T Consensus 89 -----~~~H~~~~~~~~~~~~ 104 (114)
T 3fjs_A 89 -----GAAHDVNAITNTSLLV 104 (114)
T ss_dssp -----TCCEEEEESSSEEEEE
T ss_pred -----CCcEEEEeCCCcEEEE
Confidence 1233577777766544
No 86
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=52.98 E-value=49 Score=31.03 Aligned_cols=68 Identities=18% Similarity=0.219 Sum_probs=50.6
Q ss_pred ccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeeechhhHhhhccCc
Q 007183 462 VKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRS 541 (614)
Q Consensus 462 l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FGe~~ll~~l~~~~ 541 (614)
+....+.||+.+-..-.+.+.+.+|++|++++.. +| + ...+++|+++=-. +
T Consensus 39 ~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i-----~~-~--------------~~~l~~Gd~~~~p---------~ 89 (227)
T 3rns_A 39 ISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFI-----EN-N--------------KKTISNGDFLEIT---------A 89 (227)
T ss_dssp EEEEEECTTCEEEECSCSSCEEEEEEESEEEEEE-----SS-C--------------EEEEETTEEEEEC---------S
T ss_pred EEEEEECCCCccCccccCCCEEEEEEeCEEEEEE-----CC-E--------------EEEECCCCEEEEC---------C
Confidence 3455678999988777788899999999999988 33 2 3578898876332 1
Q ss_pred CCCCCCccceEEEcceEEEEEe
Q 007183 542 LSNIPMSTRSVQALKNVEAFGL 563 (614)
Q Consensus 542 ~~~~~~r~~tv~A~~~~~l~~L 563 (614)
.....++|.+++.++.+
T Consensus 90 -----~~~H~~~a~~~~~~l~i 106 (227)
T 3rns_A 90 -----NHNYSIEARDNLKLIEI 106 (227)
T ss_dssp -----SCCEEEEESSSEEEEEE
T ss_pred -----CCCEEEEECCCcEEEEE
Confidence 13457889999998876
No 87
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=50.56 E-value=63 Score=26.09 Aligned_cols=43 Identities=19% Similarity=0.099 Sum_probs=30.4
Q ss_pred ecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeee
Q 007183 467 YFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 529 (614)
Q Consensus 467 y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FG 529 (614)
+.||..+-.......++++|++|++++.. ++ + ...+.+|+.+=
T Consensus 45 ~~~g~~~~~H~h~~~e~~~vl~G~~~~~i-----~~-~--------------~~~l~~Gd~i~ 87 (114)
T 2ozj_A 45 FADGESVSEEEYFGDTLYLILQGEAVITF-----DD-Q--------------KIDLVPEDVLM 87 (114)
T ss_dssp EETTSSCCCBCCSSCEEEEEEEEEEEEEE-----TT-E--------------EEEECTTCEEE
T ss_pred ECCCCccccEECCCCeEEEEEeCEEEEEE-----CC-E--------------EEEecCCCEEE
Confidence 56666554444456789999999999887 33 2 35788998763
No 88
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=47.71 E-value=56 Score=26.40 Aligned_cols=46 Identities=17% Similarity=0.026 Sum_probs=32.8
Q ss_pred ceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeeec
Q 007183 464 PAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGE 530 (614)
Q Consensus 464 ~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FGe 530 (614)
...+.||+.-.. ...+++++|++|++++.. ++++ ...+++||.+=-
T Consensus 35 ~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i-----~~g~--------------~~~l~~GD~i~i 80 (101)
T 1o5u_A 35 IWEKEVSEFDWY--YDTNETCYILEGKVEVTT-----EDGK--------------KYVIEKGDLVTF 80 (101)
T ss_dssp EEEECSEEEEEE--CSSCEEEEEEEEEEEEEE-----TTCC--------------EEEEETTCEEEE
T ss_pred EEEeCCCccccc--CCceEEEEEEeCEEEEEE-----CCCC--------------EEEECCCCEEEE
Confidence 455677776544 346799999999999987 3223 457889998743
No 89
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=45.99 E-value=42 Score=28.03 Aligned_cols=45 Identities=11% Similarity=0.234 Sum_probs=32.3
Q ss_pred eeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeeec
Q 007183 465 AFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGE 530 (614)
Q Consensus 465 ~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FGe 530 (614)
..+.||..+-.. ...+++++|++|++++.. +| + ...+++||.+--
T Consensus 45 ~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~-----~g-~--------------~~~l~~GD~v~i 89 (119)
T 3lwc_A 45 GRYAPGQSLTET-MAVDDVMIVLEGRLSVST-----DG-E--------------TVTAGPGEIVYM 89 (119)
T ss_dssp EEECTTCEEEEE-CSSEEEEEEEEEEEEEEE-----TT-E--------------EEEECTTCEEEE
T ss_pred EEECCCCCcCcc-CCCCEEEEEEeCEEEEEE-----CC-E--------------EEEECCCCEEEE
Confidence 446677665443 366799999999999987 33 3 357899998744
No 90
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=45.89 E-value=15 Score=26.48 Aligned_cols=16 Identities=38% Similarity=0.341 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHhhh
Q 007183 592 AARIIQLAWRRRYSSRN 608 (614)
Q Consensus 592 ~~~~~~~~~~~~~~~~~ 608 (614)
+|..||..|| .|.-|+
T Consensus 30 aai~IQ~~~R-g~~aR~ 45 (58)
T 2ix7_C 30 AAITVQRYVR-GYQARC 45 (58)
T ss_dssp HHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHH-HHHHHH
Confidence 5566666666 554443
No 91
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=45.68 E-value=1e+02 Score=24.73 Aligned_cols=68 Identities=15% Similarity=0.061 Sum_probs=43.0
Q ss_pred ccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeeechhhHhhhccCc
Q 007183 462 VKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRS 541 (614)
Q Consensus 462 l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FGe~~ll~~l~~~~ 541 (614)
+....+.||..+-..-....++++|.+|.+++.. ++ + ...+.+|+.+=-. +
T Consensus 42 ~~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~-----~~-~--------------~~~l~~Gd~~~ip---------~ 92 (115)
T 1yhf_A 42 ITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI-----DQ-E--------------TYRVAEGQTIVMP---------A 92 (115)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEESEEEEEE-----TT-E--------------EEEEETTCEEEEC---------T
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeCEEEEEE-----CC-E--------------EEEECCCCEEEEC---------C
Confidence 3445567887765433445789999999999987 33 2 3578898877432 1
Q ss_pred CCCCCCccceEEEcceEEEEEe
Q 007183 542 LSNIPMSTRSVQALKNVEAFGL 563 (614)
Q Consensus 542 ~~~~~~r~~tv~A~~~~~l~~L 563 (614)
.....+++.++++++.+
T Consensus 93 -----~~~H~~~~~~~~~~~~v 109 (115)
T 1yhf_A 93 -----GIPHALYAVEAFQMLLV 109 (115)
T ss_dssp -----TSCEEEEESSCEEEEEE
T ss_pred -----CCCEEEEECCCceEEEE
Confidence 12235666666666554
No 92
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=44.37 E-value=1e+02 Score=27.24 Aligned_cols=89 Identities=13% Similarity=0.035 Sum_probs=52.8
Q ss_pred ceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeeechhhHhhhccCcCC
Q 007183 464 PAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLS 543 (614)
Q Consensus 464 ~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FGe~~ll~~l~~~~~~ 543 (614)
...+.||..+-..-....++++|++|++++.. ++ + ...+.+|+++=-.+-
T Consensus 60 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i-----~~-~--------------~~~l~~Gd~i~ip~~---------- 109 (167)
T 3ibm_A 60 YFEVEPGGYTTLERHEHTHVVMVVRGHAEVVL-----DD-R--------------VEPLTPLDCVYIAPH---------- 109 (167)
T ss_dssp EEEECTTCBCCCBBCSSCEEEEEEESEEEEEE-----TT-E--------------EEEECTTCEEEECTT----------
T ss_pred EEEECCCCCCCCccCCCcEEEEEEeCEEEEEE-----CC-E--------------EEEECCCCEEEECCC----------
Confidence 34556776553333346789999999999887 33 2 357788887632210
Q ss_pred CCCCccceEEEcc---eEEEEEe-----------CHhhHHHHhhhHHHHhHhhhccc
Q 007183 544 NIPMSTRSVQALK---NVEAFGL-----------MAHDLKHVFIEHQVASSTEFNSN 586 (614)
Q Consensus 544 ~~~~r~~tv~A~~---~~~l~~L-----------s~~df~~ll~~~~l~~~~r~~~~ 586 (614)
....+++.+ .+.++++ +.+++.++.++|.+.++++..-+
T Consensus 110 ----~~H~~~n~~~~~~~~~l~i~~~~~d~p~~p~~~~~~~l~~~~~~~~~~~~~~~ 162 (167)
T 3ibm_A 110 ----AWHQIHATGANEPLGFLCIVDSDRDRPQRPDADDLARMCADPAVARRIRTEGH 162 (167)
T ss_dssp ----CCEEEEEESSSCCEEEEEEEESSCCCCBCCCHHHHHHHTTSHHHHHHCCCCC-
T ss_pred ----CcEEEEeCCCCCCEEEEEEEeCCcCcccCCCHHHHHHHHcChHHHHhhccccc
Confidence 111233322 3333333 46777777777999888876544
No 93
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=41.52 E-value=33 Score=28.45 Aligned_cols=49 Identities=16% Similarity=0.076 Sum_probs=32.2
Q ss_pred ccceeecCCcEEEecCCc-cCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeee
Q 007183 462 VKPAFYFKHTHIVLEGDP-IYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 529 (614)
Q Consensus 462 l~~~~y~~ge~I~~~G~~-~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FG 529 (614)
+....+.||..+-..-.. ..++++|++|++++.. ++++ ...+++|+.+=
T Consensus 41 ~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~-----~~~~--------------~~~l~~Gd~~~ 90 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQ-----GNGI--------------VTHLKAGDIAI 90 (125)
T ss_dssp EEEEEECTTCEECCC-CTTCEEEEEEEECEEEEEC-----STTC--------------EEEEETTEEEE
T ss_pred EEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEE-----CCCe--------------EEEeCCCCEEE
Confidence 334557788776444344 3689999999999876 2233 35778888763
No 94
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=40.02 E-value=23 Score=30.07 Aligned_cols=45 Identities=11% Similarity=0.085 Sum_probs=30.3
Q ss_pred ecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeeech
Q 007183 467 YFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEE 531 (614)
Q Consensus 467 y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FGe~ 531 (614)
..||..-....+ .+++++|++|++.+.. . +++ ...+++||.+---
T Consensus 56 ~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~----~-~g~--------------~~~l~~GD~~~ip 100 (123)
T 3bcw_A 56 STSGSFQSNTTG-YIEYCHIIEGEARLVD----P-DGT--------------VHAVKAGDAFIMP 100 (123)
T ss_dssp EEEEEEECCCTT-EEEEEEEEEEEEEEEC----T-TCC--------------EEEEETTCEEEEC
T ss_pred ECCCceeeEcCC-CcEEEEEEEEEEEEEE----C-CCe--------------EEEECCCCEEEEC
Confidence 345555443322 3799999999999987 2 333 3578999988543
No 95
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=39.82 E-value=45 Score=31.30 Aligned_cols=44 Identities=11% Similarity=-0.009 Sum_probs=29.4
Q ss_pred ecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeee
Q 007183 467 YFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 529 (614)
Q Consensus 467 y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FG 529 (614)
+.||-.+=.--...+++|+|++|.+++.. ++++ ...+++|+.+=
T Consensus 139 l~PG~~yP~HsHp~EEiy~VLsG~~e~~v-----~~g~--------------~~~l~pGd~v~ 182 (217)
T 4b29_A 139 WGPGLDYGWHEHLPEELYSVVSGRALFHL-----RNAP--------------DLMLEPGQTRF 182 (217)
T ss_dssp ECSSCEEEEEECSSEEEEEEEEECEEEEE-----TTSC--------------CEEECTTCEEE
T ss_pred ECCCCcCCCCCCCCceEEEEEeCCEEEEE-----CCCC--------------EEecCCCCEEE
Confidence 44444432223456799999999999987 3333 46788888763
No 96
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=39.60 E-value=30 Score=29.06 Aligned_cols=44 Identities=9% Similarity=0.064 Sum_probs=30.1
Q ss_pred cCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeeech
Q 007183 468 FKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEE 531 (614)
Q Consensus 468 ~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FGe~ 531 (614)
.||..-+.. +..++.+.|++|++.+.. .+ ++ ...+++||.|---
T Consensus 50 tPG~~~~~~-~~~~E~~~iLeG~~~lt~----dd-G~--------------~~~l~aGD~~~~P 93 (116)
T 3es4_A 50 EPGIYNYAG-RDLEETFVVVEGEALYSQ----AD-AD--------------PVKIGPGSIVSIA 93 (116)
T ss_dssp CSEEEEECC-CSEEEEEEEEECCEEEEE----TT-CC--------------CEEECTTEEEEEC
T ss_pred CCceeECee-CCCcEEEEEEEeEEEEEe----CC-Ce--------------EEEECCCCEEEEC
Confidence 455544443 334589999999999988 33 33 3578999988543
No 97
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=39.48 E-value=54 Score=25.57 Aligned_cols=46 Identities=9% Similarity=-0.008 Sum_probs=31.4
Q ss_pred ceeecCCcEEEecCCc-cCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeee
Q 007183 464 PAFYFKHTHIVLEGDP-IYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 529 (614)
Q Consensus 464 ~~~y~~ge~I~~~G~~-~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FG 529 (614)
...+.||..+-..-.. .+++++|.+|++++.. ++ + ...+++|+.+=
T Consensus 32 ~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~-----~~-~--------------~~~l~~Gd~~~ 78 (105)
T 1v70_A 32 LYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV-----GE-E--------------EALLAPGMAAF 78 (105)
T ss_dssp EEEECTTCEEEEECCSSCEEEEEEEESCEEEEE-----TT-E--------------EEEECTTCEEE
T ss_pred EEEECCCCcCCccCCCCCcEEEEEEeCEEEEEE-----CC-E--------------EEEeCCCCEEE
Confidence 4456788776443333 3579999999999887 32 2 35788888763
No 98
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=38.52 E-value=53 Score=26.55 Aligned_cols=67 Identities=10% Similarity=0.123 Sum_probs=42.4
Q ss_pred cceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeeechhhHhhhccCcC
Q 007183 463 KPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSL 542 (614)
Q Consensus 463 ~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FGe~~ll~~l~~~~~ 542 (614)
....+.||..+-.--....++++|++|.+++.. ++ + ...+.+|+.+=-- +
T Consensus 37 ~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~-----~~-~--------------~~~l~~Gd~~~ip---------~- 86 (116)
T 2pfw_A 37 VKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV-----DG-V--------------IKVLTAGDSFFVP---------P- 86 (116)
T ss_dssp EEEEECTTEEEEEECCSSEEEEEEEEECEEEEE-----TT-E--------------EEEECTTCEEEEC---------T-
T ss_pred EEEEECCCCcCCcEECCcceEEEEEeeEEEEEE-----CC-E--------------EEEeCCCCEEEEC---------c-
Confidence 345567887654333346789999999999887 33 2 3578899886332 1
Q ss_pred CCCCCccceEEEcceEEEEEe
Q 007183 543 SNIPMSTRSVQALKNVEAFGL 563 (614)
Q Consensus 543 ~~~~~r~~tv~A~~~~~l~~L 563 (614)
.....+++.+.+.++.+
T Consensus 87 ----~~~H~~~~~~~~~~l~v 103 (116)
T 2pfw_A 87 ----HVDHGAVCPTGGILIDT 103 (116)
T ss_dssp ----TCCEEEEESSCEEEEEE
T ss_pred ----CCceeeEeCCCcEEEEE
Confidence 12234666667766655
No 99
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=37.91 E-value=48 Score=26.43 Aligned_cols=33 Identities=12% Similarity=-0.057 Sum_probs=24.0
Q ss_pred cceeecCCcEEEec--CCc-cCeEEEEEeeEEEEEe
Q 007183 463 KPAFYFKHTHIVLE--GDP-IYEMLFIVQGKMWIYT 495 (614)
Q Consensus 463 ~~~~y~~ge~I~~~--G~~-~~~lyfI~~G~v~v~~ 495 (614)
....+.||..+-.. -.. ..++++|.+|++++..
T Consensus 24 ~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~ 59 (113)
T 2gu9_A 24 AEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV 59 (113)
T ss_dssp EEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEE
T ss_pred EEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEE
Confidence 34457888876543 333 5789999999999887
No 100
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=37.36 E-value=52 Score=27.11 Aligned_cols=48 Identities=10% Similarity=0.059 Sum_probs=33.7
Q ss_pred ccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeee
Q 007183 462 VKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 529 (614)
Q Consensus 462 l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FG 529 (614)
+....+.||..+-..-....++++|++|++++.. ++ + ...+.+|+.+=
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~-----~~-~--------------~~~l~~Gd~~~ 90 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTI-----GE-E--------------TRVLRPGMAYT 90 (126)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEECEEEEE-----TT-E--------------EEEECTTEEEE
T ss_pred EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEE-----CC-E--------------EEEeCCCCEEE
Confidence 3445677887765444445789999999999987 33 2 35788888763
No 101
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=36.94 E-value=27 Score=31.56 Aligned_cols=52 Identities=13% Similarity=0.153 Sum_probs=34.8
Q ss_pred ccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeee
Q 007183 462 VKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 529 (614)
Q Consensus 462 l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FG 529 (614)
+....+.||......-..++++++|++|++++...+ .+++. ...+++||.+=
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~--~~~~~--------------~~~l~~GDv~~ 94 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVN--PDGRD--------------TYKLDQGDAIK 94 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEE--TTEEE--------------EEEEETTEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEe--CCCcE--------------EEEECCCCEEE
Confidence 445567888776554334579999999999887642 22222 45788888764
No 102
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=31.52 E-value=37 Score=30.68 Aligned_cols=36 Identities=17% Similarity=0.415 Sum_probs=26.0
Q ss_pred ccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeeec
Q 007183 479 PIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGE 530 (614)
Q Consensus 479 ~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FGe 530 (614)
..++++++++|.+.+... ++++.. ...+++|+.|=-
T Consensus 54 ~~dE~FyvlkG~m~i~v~----d~g~~~------------~v~l~eGE~f~l 89 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLW----VDGRRE------------RADLKEGDIFLL 89 (174)
T ss_dssp SSCEEEEEEESCEEEEEE----ETTEEE------------EEEECTTCEEEE
T ss_pred CCceEEEEEeeEEEEEEE----cCCcee------------eEEECCCCEEEe
Confidence 457999999999999884 323211 467889998843
No 103
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=31.41 E-value=29 Score=27.48 Aligned_cols=48 Identities=10% Similarity=0.049 Sum_probs=30.7
Q ss_pred ceeecCCcEEE-ecCCccCeEEEEEeeEEEEEeeeccCCCC-cccccccCcccccccceecCCCCeeec
Q 007183 464 PAFYFKHTHIV-LEGDPIYEMLFIVQGKMWIYTSKERTNGS-ANTSHSRDNSKFISRKDHLADGDFWGE 530 (614)
Q Consensus 464 ~~~y~~ge~I~-~~G~~~~~lyfI~~G~v~v~~~~~~~~g~-~~~~~~~~n~~~~~~~~~l~~G~~FGe 530 (614)
...+.||...- ..-+..+++++|++|++++.. +++ + ...+.+|+.+=.
T Consensus 22 ~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~-----~~g~~--------------~~~l~~Gd~~~~ 71 (97)
T 2fqp_A 22 EWRFPPGGETGWHRHSMDYVVVPMTTGPLLLET-----PEGSV--------------TSQLTRGVSYTR 71 (97)
T ss_dssp EEEECTTCBCCSEECCSCEEEEESSCEEEEEEE-----TTEEE--------------EEEECTTCCEEE
T ss_pred EEEECCCCCCCCEECCCCcEEEEEeecEEEEEe-----CCCCE--------------EEEEcCCCEEEe
Confidence 34567776542 222222359999999999987 332 2 457889988743
No 104
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=28.78 E-value=45 Score=28.95 Aligned_cols=65 Identities=9% Similarity=0.053 Sum_probs=39.1
Q ss_pred cCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeeechhhHhhhccCcCCCCCCccceEEEc
Q 007183 476 EGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQAL 555 (614)
Q Consensus 476 ~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~ 555 (614)
.-+..|++|+|++|++.+...+...++.... ...+++|+++=-. +.. ..+-.|.
T Consensus 46 ~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~------------~V~l~~Ge~yvVP--------kGv------eH~p~a~ 99 (140)
T 3d0j_A 46 IHHSTDEQFILSAGKAILITAEKENDKFNIE------------LTLMEKGKVYNVP--------AEC------WFYSITQ 99 (140)
T ss_dssp EESSCCEEEEEEESCEEEEEEEEETTEEEEE------------EEECCTTCCEEEC--------TTC------EEEEEEC
T ss_pred cCCCCCeEEEEEecEEEEEEecCcCCCCccc------------eEEecCCCEEEeC--------CCc------cCcccCC
Confidence 3455689999999999998853100111111 4678888887443 111 1245666
Q ss_pred ceEEEEEeCHh
Q 007183 556 KNVEAFGLMAH 566 (614)
Q Consensus 556 ~~~~l~~Ls~~ 566 (614)
+.|.++.+...
T Consensus 100 ~e~~vLLiEp~ 110 (140)
T 3d0j_A 100 KDTKMMYVQDS 110 (140)
T ss_dssp TTCEEEEEEES
T ss_pred CceEEEEEEeC
Confidence 77777776544
No 105
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=28.77 E-value=56 Score=29.52 Aligned_cols=50 Identities=14% Similarity=0.116 Sum_probs=31.8
Q ss_pred eeecCCcEEEe---cCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeeec
Q 007183 465 AFYFKHTHIVL---EGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGE 530 (614)
Q Consensus 465 ~~y~~ge~I~~---~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FGe 530 (614)
..+.||...-. -...++++++|++|++++.. .+++... ...+++||.+=-
T Consensus 122 ~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~----~~~~~~~------------~~~l~~GD~~~~ 174 (198)
T 2bnm_A 122 VDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKW----GDKENPK------------EALLPTGASMFV 174 (198)
T ss_dssp EEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEE----SCTTSCE------------EEEECTTCEEEE
T ss_pred EEEcCCCCCcccccccCCCeEEEEEEeeeEEEEE----CCcCCcc------------cEEECCCCEEEe
Confidence 34567765431 22344689999999999988 2222111 568999998743
No 106
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=27.94 E-value=47 Score=29.98 Aligned_cols=46 Identities=9% Similarity=0.115 Sum_probs=30.0
Q ss_pred ceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCee
Q 007183 464 PAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFW 528 (614)
Q Consensus 464 ~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~F 528 (614)
...+.||...-.--....+..+|++|++++.. ++++ ...+++||.+
T Consensus 83 ~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~l-----d~ge--------------~~~L~~GDsi 128 (172)
T 3es1_A 83 VVDMLPGKESPMHRTNSIDYGIVLEGEIELEL-----DDGA--------------KRTVRQGGII 128 (172)
T ss_dssp EEEECTTCBCCCBCCSEEEEEEEEESCEEEEC-----GGGC--------------EEEECTTCEE
T ss_pred EEEECCCCCCCCeecCceEEEEEEeCEEEEEE-----CCCe--------------EEEECCCCEE
Confidence 34566665432222334568899999999987 2122 3578999998
No 107
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=27.42 E-value=67 Score=26.08 Aligned_cols=30 Identities=17% Similarity=0.201 Sum_probs=19.8
Q ss_pred eecCCcEEEecCCccCeEEEEEeeEEEEEe
Q 007183 466 FYFKHTHIVLEGDPIYEMLFIVQGKMWIYT 495 (614)
Q Consensus 466 ~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~ 495 (614)
.+.||...-.--....++++|.+|++.+..
T Consensus 33 ~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i 62 (117)
T 2b8m_A 33 VLPRGEQMPKHYSNSYVHLIIIKGEMTLTL 62 (117)
T ss_dssp EEETTCBCCCEECSSCEEEEEEESEEEEEE
T ss_pred EECCCCcCCCEeCCCcEEEEEEeCEEEEEE
Confidence 455665442212235689999999999987
No 108
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=27.17 E-value=39 Score=30.53 Aligned_cols=63 Identities=19% Similarity=0.227 Sum_probs=39.7
Q ss_pred HHHHHHhhhccc----eeecCCcEEEe--cC---------CccCeEEEEEeeEEEEEeeeccCCC---CcccccccCccc
Q 007183 453 EVLDALCDCVKP----AFYFKHTHIVL--EG---------DPIYEMLFIVQGKMWIYTSKERTNG---SANTSHSRDNSK 514 (614)
Q Consensus 453 ~~l~~L~~~l~~----~~y~~ge~I~~--~G---------~~~~~lyfI~~G~v~v~~~~~~~~g---~~~~~~~~~n~~ 514 (614)
+-+++....++| +....+++++. .| +..++++++++|.+.+...| +| ++..
T Consensus 12 ~wl~e~~~~~~PPV~Nk~v~~~~~~V~~vgGPn~r~D~H~~~~eE~Fy~lkG~m~l~v~d---~g~~~~~~~-------- 80 (176)
T 1zvf_A 12 KWLKENEGLLKPPVNNYCLHKGGFTVMIVGGPNERTDYHINPTPEWFYQKKGSMLLKVVD---ETDAEPKFI-------- 80 (176)
T ss_dssp HHHHHHGGGGSSSSCEEEEECSSEEEEEECSSBCCSCEEECSSCEEEEEEESCEEEEEEE---CSSSSCEEE--------
T ss_pred HHHHHhHhhcCCCcCCEEEecCCEEEEEEcCCCcCCcCcCCCCceEEEEEeCEEEEEEEc---CCCccccee--------
Confidence 345566667777 54444666543 22 23468999999999999853 23 1111
Q ss_pred ccccceecCCCCeeec
Q 007183 515 FISRKDHLADGDFWGE 530 (614)
Q Consensus 515 ~~~~~~~l~~G~~FGe 530 (614)
-..+++|+.|=-
T Consensus 81 ----dv~i~eGdmfll 92 (176)
T 1zvf_A 81 ----DIIINEGDSYLL 92 (176)
T ss_dssp ----EEEECTTEEEEE
T ss_pred ----eEEECCCCEEEc
Confidence 468899998843
No 109
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=26.41 E-value=49 Score=29.66 Aligned_cols=32 Identities=16% Similarity=0.145 Sum_probs=24.7
Q ss_pred ccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeeec
Q 007183 479 PIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGE 530 (614)
Q Consensus 479 ~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FGe 530 (614)
.+++++||++|++++.. ++ + ...+++|++|=-
T Consensus 109 ~gEE~~yVLeG~v~vtl-----~g-~--------------~~~L~~Gds~~i 140 (166)
T 2vpv_A 109 RTYITFHVIQGIVEVTV-----CK-N--------------KFLSVKGSTFQI 140 (166)
T ss_dssp SEEEEEEEEESEEEEEE-----TT-E--------------EEEEETTCEEEE
T ss_pred CceEEEEEEEeEEEEEE-----CC-E--------------EEEEcCCCEEEE
Confidence 45689999999999988 22 2 357889998743
No 110
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=24.71 E-value=91 Score=29.10 Aligned_cols=67 Identities=13% Similarity=0.133 Sum_probs=45.6
Q ss_pred ccceeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeeechhhHhhhccCc
Q 007183 462 VKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRS 541 (614)
Q Consensus 462 l~~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FGe~~ll~~l~~~~ 541 (614)
+....+.||..+-..-...+++++|++|++++.. +| + ...+.+|+.+=-. +
T Consensus 155 ~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i-----~g-~--------------~~~l~~Gd~i~ip---------~ 205 (227)
T 3rns_A 155 MTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYV-----DG-K--------------PFIVKKGESAVLP---------A 205 (227)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEE-----TT-E--------------EEEEETTEEEEEC---------T
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeEEEEEEE-----CC-E--------------EEEECCCCEEEEC---------C
Confidence 4456688999876555556789999999999987 33 2 3578898876432 1
Q ss_pred CCCCCCccceEEE-cceEEEEE
Q 007183 542 LSNIPMSTRSVQA-LKNVEAFG 562 (614)
Q Consensus 542 ~~~~~~r~~tv~A-~~~~~l~~ 562 (614)
.....+++ .+.+.++.
T Consensus 206 -----~~~H~~~~~~~~~~~ll 222 (227)
T 3rns_A 206 -----NIPHAVEAETENFKMLL 222 (227)
T ss_dssp -----TSCEEEECCSSCEEEEE
T ss_pred -----CCcEEEEeCCCCEEEEE
Confidence 12235677 77776654
No 111
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=24.54 E-value=1e+02 Score=26.40 Aligned_cols=32 Identities=13% Similarity=0.190 Sum_probs=22.0
Q ss_pred ceeecCCcEEEecCCccCeEEEEEeeEEEEEe
Q 007183 464 PAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYT 495 (614)
Q Consensus 464 ~~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~ 495 (614)
...+.||..+-..-....++++|.+|++.+..
T Consensus 52 ~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~ 83 (147)
T 2f4p_A 52 DVVFEPGARTHWHSHPGGQILIVTRGKGFYQE 83 (147)
T ss_dssp EEEECTTCEECSEECTTCEEEEEEEEEEEEEE
T ss_pred EEEECCCCccCceECCCceEEEEEeCEEEEEE
Confidence 34566776653222334689999999999987
No 112
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=24.54 E-value=71 Score=26.06 Aligned_cols=35 Identities=23% Similarity=0.351 Sum_probs=24.8
Q ss_pred CccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeeec
Q 007183 478 DPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGE 530 (614)
Q Consensus 478 ~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FGe 530 (614)
...+++++|++|++++.. +++.. ...+++||.+--
T Consensus 51 ~~~~E~~~Vl~G~~~l~~-----~~~~~-------------~~~l~~Gd~i~i 85 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIEC-----EGDTA-------------PRVMRPGDWLHV 85 (112)
T ss_dssp CSSEEEEEEEESCEEEEE-----TTCSS-------------CEEECTTEEEEE
T ss_pred CCccEEEEEEeCeEEEEE-----CCEEE-------------EEEECCCCEEEE
Confidence 345689999999999988 22220 157889988744
No 113
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=24.27 E-value=88 Score=26.27 Aligned_cols=45 Identities=18% Similarity=0.231 Sum_probs=30.4
Q ss_pred ceeecCCcEEEecCCc-cCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCee
Q 007183 464 PAFYFKHTHIVLEGDP-IYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFW 528 (614)
Q Consensus 464 ~~~y~~ge~I~~~G~~-~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~F 528 (614)
...+.||..+-.--.. ..++++|++|++++.. ++ + ...+.+|+.+
T Consensus 61 ~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i-----~~-~--------------~~~l~~Gd~i 106 (133)
T 1o4t_A 61 RMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD-----NG-K--------------DVPIKAGDVC 106 (133)
T ss_dssp EEEECTTCEEEEEECCSEEEEEEEEESEEEEEE-----TT-E--------------EEEEETTEEE
T ss_pred EEEECCCCccCceECCCccEEEEEEeCEEEEEE-----CC-E--------------EEEeCCCcEE
Confidence 3456788765332223 3689999999999987 33 2 3567888876
No 114
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=23.14 E-value=32 Score=27.67 Aligned_cols=34 Identities=15% Similarity=0.002 Sum_probs=23.5
Q ss_pred ccceeecCCcEEEecCC-ccCeEEEEEeeEEEEEe
Q 007183 462 VKPAFYFKHTHIVLEGD-PIYEMLFIVQGKMWIYT 495 (614)
Q Consensus 462 l~~~~y~~ge~I~~~G~-~~~~lyfI~~G~v~v~~ 495 (614)
.+...+.||+-+-..-- .....|+|.+|++.+..
T Consensus 19 V~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~ 53 (98)
T 3lag_A 19 VTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVA 53 (98)
T ss_dssp EEEEEECTTEECCSEECCSCEEEEESSCBC-CEEC
T ss_pred EEEEEECCCCccCcEECCCcEEEEEEeccEEEEEe
Confidence 44566888887754433 34568889999999887
No 115
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=22.98 E-value=81 Score=26.14 Aligned_cols=31 Identities=16% Similarity=0.170 Sum_probs=21.3
Q ss_pred eeecCCcEEEecCCccCeEEEEEeeEEEEEe
Q 007183 465 AFYFKHTHIVLEGDPIYEMLFIVQGKMWIYT 495 (614)
Q Consensus 465 ~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~ 495 (614)
..+.||...-.--....++++|.+|++++..
T Consensus 53 ~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i 83 (126)
T 1vj2_A 53 FTVEPGGLIDRHSHPWEHEIFVLKGKLTVLK 83 (126)
T ss_dssp EEEEEEEEEEEECCSSCEEEEEEESEEEEEC
T ss_pred EEECCCCcCCceeCCCcEEEEEEEeEEEEEE
Confidence 3455665543333346789999999999887
No 116
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=22.98 E-value=1.2e+02 Score=27.19 Aligned_cols=45 Identities=13% Similarity=0.262 Sum_probs=30.8
Q ss_pred eeecCCcEEEec--CCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeee
Q 007183 465 AFYFKHTHIVLE--GDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 529 (614)
Q Consensus 465 ~~y~~ge~I~~~--G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FG 529 (614)
..+.||...... .....++++|++|++++.. ++ + ...+.+||.+=
T Consensus 109 ~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~-----~~-~--------------~~~l~~GD~i~ 155 (192)
T 1y9q_A 109 ITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF-----DE-Q--------------WHELQQGEHIR 155 (192)
T ss_dssp EEECTTCEEEECCCSTTCEEEEEEEESCEEEEE-----TT-E--------------EEEECTTCEEE
T ss_pred EEECCCCCccCCCCCCCCEEEEEEEEeEEEEEE-----CC-E--------------EEEeCCCCEEE
Confidence 456777765421 1334689999999999887 32 2 45788999773
No 117
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=22.95 E-value=1.4e+02 Score=23.04 Aligned_cols=50 Identities=12% Similarity=0.146 Sum_probs=33.2
Q ss_pred CeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeeechhhHhhhccCcCCCCCCccceEEEcceEEE
Q 007183 481 YEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEA 560 (614)
Q Consensus 481 ~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~~~~~l 560 (614)
.++++|.+|.+.+.. ++. ...+.+|+.+=-- + .....+.+.+++.+
T Consensus 51 ~e~~~v~~G~~~~~~-----~~~---------------~~~l~~Gd~~~ip---------~-----~~~H~~~~~~~~~~ 96 (102)
T 3d82_A 51 DEVFIVMEGTLQIAF-----RDQ---------------NITLQAGEMYVIP---------K-----GVEHKPMAKEECKI 96 (102)
T ss_dssp CEEEEEEESEEEEEC-----SSC---------------EEEEETTEEEEEC---------T-----TCCBEEEEEEEEEE
T ss_pred cEEEEEEeCEEEEEE-----CCE---------------EEEEcCCCEEEEC---------C-----CCeEeeEcCCCCEE
Confidence 689999999999877 332 3567888876322 1 12234556678888
Q ss_pred EEeC
Q 007183 561 FGLM 564 (614)
Q Consensus 561 ~~Ls 564 (614)
+.++
T Consensus 97 l~i~ 100 (102)
T 3d82_A 97 MIIE 100 (102)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7764
No 118
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=22.74 E-value=66 Score=28.61 Aligned_cols=45 Identities=18% Similarity=0.039 Sum_probs=29.6
Q ss_pred eeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeee
Q 007183 465 AFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 529 (614)
Q Consensus 465 ~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FG 529 (614)
..+.||..+-..-....++++|++|++++.. ++ + ...+.+|+.+=
T Consensus 58 ~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v-----~g-~--------------~~~l~~GD~i~ 102 (166)
T 3jzv_A 58 FEVGPGGHSTLERHQHAHGVMILKGRGHAMV-----GR-A--------------VSAVAPYDLVT 102 (166)
T ss_dssp EEEEEEEECCCBBCSSCEEEEEEEECEEEEE-----TT-E--------------EEEECTTCEEE
T ss_pred EEECCCCccCceeCCCcEEEEEEeCEEEEEE-----CC-E--------------EEEeCCCCEEE
Confidence 3456666543333345689999999999877 33 2 35778888763
No 119
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=22.44 E-value=76 Score=27.03 Aligned_cols=45 Identities=11% Similarity=0.031 Sum_probs=30.7
Q ss_pred eeecCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeeech
Q 007183 465 AFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEE 531 (614)
Q Consensus 465 ~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FGe~ 531 (614)
..+.||..-... ..+++++|++|++++.. +| + ...+++||.+---
T Consensus 62 ~~~~pG~~~~h~--~~~E~~~VLeG~~~l~~-----~g-~--------------~~~l~~GD~i~~p 106 (133)
T 2pyt_A 62 MQWDNAFFPWTL--NYDEIDMVLEGELHVRH-----EG-E--------------TMIAKAGDVMFIP 106 (133)
T ss_dssp EEEEEEEEEEEC--SSEEEEEEEEEEEEEEE-----TT-E--------------EEEEETTCEEEEC
T ss_pred EEECCCCccccC--CCCEEEEEEECEEEEEE-----CC-E--------------EEEECCCcEEEEC
Confidence 346677432222 35799999999999987 33 3 3578999988543
No 120
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=22.31 E-value=71 Score=28.07 Aligned_cols=30 Identities=13% Similarity=-0.045 Sum_probs=20.5
Q ss_pred eecCCcEEEecCCccCeEEEEEeeEEEEEe
Q 007183 466 FYFKHTHIVLEGDPIYEMLFIVQGKMWIYT 495 (614)
Q Consensus 466 ~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~ 495 (614)
.+.||..+-..-....++++|++|++++..
T Consensus 50 ~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v 79 (156)
T 3kgz_A 50 EVDEGGYSTLERHAHVHAVMIHRGHGQCLV 79 (156)
T ss_dssp EEEEEEECCCBBCSSCEEEEEEEEEEEEEE
T ss_pred EECCCCccCceeCCCcEEEEEEeCEEEEEE
Confidence 345665543322345689999999999987
No 121
>3euj_B Chromosome partition protein MUKF; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_E*
Probab=22.08 E-value=9.3 Score=32.81 Aligned_cols=43 Identities=14% Similarity=0.233 Sum_probs=0.0
Q ss_pred hcCCCCHHHHHHHHHHHHHHHhcC-----C---------CCChhHHhhcCChHHHHH
Q 007183 389 PIQKLSRSVQQQLKIYQRYIWRKP-----D---------TIDVESSLSILPKELRRN 431 (614)
Q Consensus 389 ~~~~ip~~L~~rV~~y~~~~~~~~-----~---------~~~~~~il~~Lp~~Lr~e 431 (614)
|+|-.+..||+.|++||+.-|.-+ + ...++++..+||+.|.-|
T Consensus 3 KNRvFsQRLRqSi~~Yfd~pW~Lt~A~aeRL~DlRDEel~Lr~eEvtGelP~elEye 59 (152)
T 3euj_B 3 KNRVFGQRLRQSIQNYFSSPWLLYTAKAEALLDLRDDEAMLNEMEAVGELPMALEYE 59 (152)
T ss_dssp ---------------------------------------------------------
T ss_pred chHHHHHHHHHHHHHhccCchhhhhcchHHHhhhhHHHHhhhhhhhhcCCchhhhHH
Confidence 355678889999999999988631 1 122467788899888654
No 122
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=21.93 E-value=1.1e+02 Score=25.22 Aligned_cols=31 Identities=19% Similarity=0.285 Sum_probs=20.8
Q ss_pred eeecCCcEEEecCCccCeEEEEEeeEEEEEe
Q 007183 465 AFYFKHTHIVLEGDPIYEMLFIVQGKMWIYT 495 (614)
Q Consensus 465 ~~y~~ge~I~~~G~~~~~lyfI~~G~v~v~~ 495 (614)
..+.||...-..-....++++|.+|++++..
T Consensus 39 ~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i 69 (128)
T 4i4a_A 39 CIVRPETKSFRHSHNEYELFIVIQGNAIIRI 69 (128)
T ss_dssp EEECTTEECCCBCCSSEEEEEEEESEEEEEE
T ss_pred EEECCCCccCCEecCCeEEEEEEeCEEEEEE
Confidence 3455665433222345689999999999987
No 123
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=21.45 E-value=82 Score=27.71 Aligned_cols=32 Identities=6% Similarity=-0.056 Sum_probs=21.8
Q ss_pred ceeecCCcEEE--ecCCccCeEEEEEeeEEEEEe
Q 007183 464 PAFYFKHTHIV--LEGDPIYEMLFIVQGKMWIYT 495 (614)
Q Consensus 464 ~~~y~~ge~I~--~~G~~~~~lyfI~~G~v~v~~ 495 (614)
...+.||.... ..-+..+++++|++|++++..
T Consensus 47 ~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~ 80 (163)
T 3i7d_A 47 LVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVD 80 (163)
T ss_dssp EEEECTTCBSSSSEEESSCCEEEEEEESCEEEEE
T ss_pred EEEECCCCcCCCCccCCCCcEEEEEEECEEEEEE
Confidence 44567777442 222233699999999999988
No 124
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=20.87 E-value=47 Score=26.61 Aligned_cols=68 Identities=10% Similarity=0.006 Sum_probs=38.9
Q ss_pred cCCcEEEecCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeeechhhHhhhccCcCCCCCC
Q 007183 468 FKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPM 547 (614)
Q Consensus 468 ~~ge~I~~~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FGe~~ll~~l~~~~~~~~~~ 547 (614)
.||+.....-+..+++++|++|++++.. ++++ ...+++|+.+=-- +.
T Consensus 36 ~~g~~~~H~H~~~~E~~~Vl~G~~~~~~-----~~~~--------------~~~l~~Gd~~~ip---------~~----- 82 (107)
T 2i45_A 36 LLGDYGWHTHGYSDKVLFAVEGDMAVDF-----ADGG--------------SMTIREGEMAVVP---------KS----- 82 (107)
T ss_dssp EEEECCCBCC--CCEEEEESSSCEEEEE-----TTSC--------------EEEECTTEEEEEC---------TT-----
T ss_pred CCCCCcceeCCCCCEEEEEEeCEEEEEE-----CCCc--------------EEEECCCCEEEEC---------CC-----
Confidence 4555332232223799999999999987 3312 3578899887332 11
Q ss_pred ccceEEEcceEEEEEeCHhhH
Q 007183 548 STRSVQALKNVEAFGLMAHDL 568 (614)
Q Consensus 548 r~~tv~A~~~~~l~~Ls~~df 568 (614)
.....++.+.+.++.++....
T Consensus 83 ~~H~~~~~~~~~~l~i~~~~~ 103 (107)
T 2i45_A 83 VSHRPRSENGCSLVLIELSDP 103 (107)
T ss_dssp CCEEEEEEEEEEEEEEECC--
T ss_pred CcEeeEeCCCeEEEEEECCCc
Confidence 122344456777777765443
No 125
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=20.54 E-value=90 Score=27.40 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=23.8
Q ss_pred ccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeee
Q 007183 479 PIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 529 (614)
Q Consensus 479 ~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FG 529 (614)
..+++++|++|++++.. +| + ...+++||.+=
T Consensus 83 ~~eE~~yVLeG~~~l~i-----~g-~--------------~~~l~~GD~i~ 113 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIII-----DG-R--------------KVSASSGELIF 113 (151)
T ss_dssp SSEEEEEEEEEEEEEEE-----TT-E--------------EEEEETTCEEE
T ss_pred CCcEEEEEEEeEEEEEE-----CC-E--------------EEEEcCCCEEE
Confidence 35689999999999987 33 3 45788999874
No 126
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=20.51 E-value=1.3e+02 Score=23.61 Aligned_cols=32 Identities=9% Similarity=0.149 Sum_probs=21.4
Q ss_pred ceeecCCcEEEecCCcc-CeE-EEEEeeEEEEEe
Q 007183 464 PAFYFKHTHIVLEGDPI-YEM-LFIVQGKMWIYT 495 (614)
Q Consensus 464 ~~~y~~ge~I~~~G~~~-~~l-yfI~~G~v~v~~ 495 (614)
...+.||..+-..-... .++ ++|.+|++++..
T Consensus 37 ~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~ 70 (110)
T 2q30_A 37 SFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVG 70 (110)
T ss_dssp EEEECTTCEEEEECCSSSCEEEEEEEESCEEEEC
T ss_pred EEEECCCCcCCcccCCCCccEEEEEEeCEEEEEe
Confidence 34467887664333222 466 799999999877
No 127
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=20.11 E-value=1.1e+02 Score=29.09 Aligned_cols=50 Identities=12% Similarity=0.053 Sum_probs=35.9
Q ss_pred hccceeecCCcEEEe-cCCccCeEEEEEeeEEEEEeeeccCCCCcccccccCcccccccceecCCCCeeec
Q 007183 461 CVKPAFYFKHTHIVL-EGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGE 530 (614)
Q Consensus 461 ~l~~~~y~~ge~I~~-~G~~~~~lyfI~~G~v~v~~~~~~~~g~~~~~~~~~n~~~~~~~~~l~~G~~FGe 530 (614)
.+....+.||..+-. .-...++.++|++|+..+.. ++ + ...+++||++--
T Consensus 166 ~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~-----~~-~--------------~~~l~~GD~~~~ 216 (246)
T 1sfn_A 166 MVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL-----EE-N--------------YYPVTAGDIIWM 216 (246)
T ss_dssp EEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE-----TT-E--------------EEEEETTCEEEE
T ss_pred EEEEEEECCCCccCcccCCCceEEEEEEECEEEEEE-----CC-E--------------EEEcCCCCEEEE
Confidence 345567889887653 33455689999999999987 33 2 457889998753
Done!