Query 007184
Match_columns 614
No_of_seqs 349 out of 1563
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 19:18:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007184.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007184hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q8g_A CRAL-TRIO domain-contai 100.0 1.2E-54 4E-59 457.0 19.5 274 59-337 24-304 (320)
2 1aua_A Phosphatidylinositol tr 100.0 7.3E-54 2.5E-58 445.1 21.5 270 62-336 18-288 (296)
3 3hx3_A Retinaldehyde-binding p 100.0 5.5E-47 1.9E-51 397.9 18.5 240 61-316 42-294 (316)
4 1r5l_A Alpha-TTP, protein (alp 100.0 1.4E-46 4.6E-51 382.6 17.0 250 72-356 5-257 (262)
5 1olm_A SEC14-like protein 2; l 100.0 1.4E-45 4.8E-50 398.9 23.8 248 63-318 1-249 (403)
6 3pg7_A Neurofibromin; SEC lipi 99.0 1.6E-10 5.5E-15 117.4 7.0 128 156-306 16-144 (256)
7 3peg_A Neurofibromin; SEC14 do 98.8 3.5E-09 1.2E-13 109.3 5.4 128 156-305 35-162 (290)
8 2bni_A General control protein 74.2 3.5 0.00012 28.2 3.6 16 537-552 1-16 (34)
9 3c3g_A Alpha/beta peptide with 71.3 4.9 0.00017 27.2 3.7 14 538-551 1-14 (33)
10 2hy6_A General control protein 70.4 1.2 4.1E-05 30.4 0.6 16 537-552 1-16 (34)
11 2oxj_A Hybrid alpha/beta pepti 70.0 5.4 0.00018 27.2 3.7 30 537-574 1-30 (34)
12 3c3f_A Alpha/beta peptide with 69.5 6.5 0.00022 26.8 4.0 15 537-551 1-15 (34)
13 2wq1_A General control protein 68.3 7.2 0.00025 26.4 4.0 14 538-551 1-14 (33)
14 1uo4_A General control protein 67.6 5.4 0.00018 27.3 3.3 15 537-551 1-15 (34)
15 3m48_A General control protein 62.4 7.2 0.00025 26.5 3.2 14 538-551 1-14 (33)
16 1kd8_A GABH AIV, GCN4 acid bas 59.6 11 0.00038 26.0 3.8 14 537-550 1-14 (36)
17 1nkp_A C-MYC, MYC proto-oncoge 58.8 47 0.0016 27.5 8.5 67 537-603 16-86 (88)
18 1nkp_B MAX protein, MYC proto- 56.5 41 0.0014 27.3 7.7 64 537-600 12-78 (83)
19 3a8y_C BAG family molecular ch 54.9 26 0.00091 31.7 6.6 67 530-603 34-109 (142)
20 1kd8_B GABH BLL, GCN4 acid bas 54.1 23 0.00077 24.5 4.6 16 537-552 1-16 (36)
21 2r2v_A GCN4 leucine zipper; co 50.5 22 0.00077 24.3 4.0 16 537-552 1-16 (34)
22 1ugo_A BCL2-associated athanog 50.1 34 0.0012 29.2 6.2 69 530-602 18-92 (99)
23 1m62_A BAG-family molecular ch 48.4 60 0.002 27.0 7.4 66 529-601 10-84 (87)
24 1wgl_A TOLL-interacting protei 43.8 23 0.00079 27.3 3.9 40 76-123 10-49 (59)
25 1ic2_A Tropomyosin alpha chain 38.4 78 0.0027 25.6 6.6 60 531-594 14-73 (81)
26 2dhy_A CUE domain-containing p 37.9 47 0.0016 26.3 4.9 43 73-123 16-58 (67)
27 3htk_A Structural maintenance 37.1 1.3E+02 0.0044 22.5 7.4 46 560-605 10-55 (60)
28 1uk5_A BAG-family molecular ch 36.5 72 0.0025 27.8 6.3 68 529-603 29-105 (111)
29 1nyh_A Regulatory protein SIR4 36.5 78 0.0027 27.8 6.5 41 569-609 119-159 (166)
30 1m7k_A Silencer of death domai 34.0 80 0.0027 26.9 6.0 68 527-601 21-97 (99)
31 1pl5_A Regulatory protein SIR4 33.3 33 0.0011 29.5 3.5 41 569-609 95-135 (142)
32 3rrk_A V-type ATPase 116 kDa s 32.7 1.3E+02 0.0046 30.6 8.9 65 539-603 198-268 (357)
33 3etw_A Adhesin A; antiparallel 32.1 1E+02 0.0035 27.1 6.6 73 533-605 5-107 (119)
34 2dam_A ETEA protein; KIAA0887, 31.7 1.2E+02 0.004 23.7 6.4 41 72-120 15-55 (67)
35 1yke_B RNA polymerase II holoe 31.2 2.7E+02 0.0093 25.3 9.7 69 527-603 50-126 (151)
36 1ufz_A Hypothetical protein BA 29.8 79 0.0027 26.1 5.1 40 76-122 35-74 (83)
37 2di0_A Activating signal coint 29.3 92 0.0031 24.9 5.3 43 72-122 10-52 (71)
38 2oqq_A Transcription factor HY 29.1 37 0.0013 24.3 2.6 16 535-550 15-30 (42)
39 4aya_A DNA-binding protein inh 26.4 84 0.0029 26.7 4.8 45 536-580 34-82 (97)
40 1v92_A NSFL1 cofactor P47; 3-h 25.5 1.1E+02 0.0036 21.6 4.7 37 75-120 5-41 (46)
41 2p2u_A HOST-nuclease inhibitor 24.9 4.1E+02 0.014 24.4 10.2 67 527-606 13-79 (171)
42 2ql2_B Neurod1, neurogenic dif 24.4 86 0.0029 24.0 4.2 43 537-579 12-58 (60)
43 2dal_A Protein KIAA0794; FAS a 23.9 1.7E+02 0.0056 22.4 5.8 40 72-120 12-51 (62)
44 3hf0_A GCN4-PLI SIDE chain seq 23.4 1.4E+02 0.0049 19.6 4.4 28 560-587 6-33 (34)
45 3u1c_A Tropomyosin alpha-1 cha 23.1 1.5E+02 0.0051 25.0 5.9 57 534-594 20-76 (101)
46 1hlo_A Protein (transcription 22.4 1E+02 0.0035 24.7 4.6 48 536-583 21-71 (80)
47 3cve_A Homer protein homolog 1 22.2 3E+02 0.01 22.0 7.2 32 533-582 3-34 (72)
48 2z5i_I TM, tropomyosin alpha-1 22.2 61 0.0021 23.1 2.7 19 566-584 21-39 (40)
49 2ke4_A CDC42-interacting prote 22.0 1.2E+02 0.004 25.8 4.9 46 542-588 41-88 (98)
50 3he4_B Synzip5; heterodimeric 21.5 97 0.0033 21.7 3.5 37 535-582 8-44 (46)
51 2kvs_A Uncharacterized protein 21.2 2.4E+02 0.0081 23.0 6.4 47 78-125 21-67 (80)
No 1
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=1.2e-54 Score=456.98 Aligned_cols=274 Identities=34% Similarity=0.611 Sum_probs=247.2
Q ss_pred cccCCCcccccCCCHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCccccc
Q 007184 59 DYRVPSVPIEDVRDEREESAVLELRQKLLERDLLPPRQDDYHTLLRFLKAREFNIERTIQMWEEMLIWRKEYGTDTILED 138 (614)
Q Consensus 59 ~~~~~~~~~eel~e~~e~~~l~~LR~~L~~~~~Lp~~~dD~~~LLRFLrArkfdvekA~~~l~~~l~WRk~~~~d~i~~d 138 (614)
....+++...++ +++|+++|++||+||.++++ +...|| .+||||||||+||+++|.+||++|++||+++++|.+..+
T Consensus 24 ~~~~~~g~~~~l-t~~q~~~l~~lR~~l~~~~~-~~~~dD-~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~ 100 (320)
T 3q8g_A 24 SPNALPGTPGNL-TKEQEEALLQFRSILLEKNY-KERLDD-STLLRFLRARKFDINASVEMFVETERWREEYGANTIIED 100 (320)
T ss_dssp CTTSCTTSTTCC-CHHHHHHHHHHHHHHHHTTC-CSSCSH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHH
T ss_pred CCCCCCCCCCCC-CHHHHHHHHHHHHHHHhcCC-CCCCCH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCccccccc
Confidence 334566677777 67889999999999999885 455566 699999999999999999999999999999999988876
Q ss_pred hhhH------HHHHHHhhcccccccCCCCCCcEEEEecCCCCcccccccccHHHHHHHHHHHHHHHHHhhCccchhhhcC
Q 007184 139 FEFE------ELEEVLQYYPQGYHGVDKEGRPVYIELLGKAHPSRLMRITTVDRYLKYHVQEFERALLERFPACSVAAKR 212 (614)
Q Consensus 139 ~~~~------el~~v~~~~p~g~~G~Dk~GrpV~i~rlg~~dp~kl~~~~t~~~~ir~~v~~lE~~l~~~~p~cs~~~~~ 212 (614)
+.++ +...+.++++.+++|+|++||||+|+++|++|+.++++.++.+++++++++.+|.++...++.|+...+.
T Consensus 101 ~~~~~~~~~~e~~~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~ 180 (320)
T 3q8g_A 101 YENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGY 180 (320)
T ss_dssp HHHTHHHHHHHHHHHHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTS
T ss_pred cccccccchhHHHHHHHhCCceecCCCCCcCEEEEEeccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCC
Confidence 5544 4456778899999999999999999999999999987878899999999999999998777888887777
Q ss_pred CcCcEEEEEeCCCCCcCCcchHHHHHHHHHHHhcccccccccceEEEEeCChhHHHHHHHHHhhcCChhhhheeEEcCCC
Q 007184 213 RICSTTTILDVQGLGMKHFTRTAANLLAAVAKVDNCYYPETLHQMFIVNAGPGFKKMLWPAAQKFLDPKSIAKIHVLEPK 292 (614)
Q Consensus 213 ~i~g~t~IiD~~G~sl~~~~~~~~~~lk~i~kilq~~YPerLk~i~IINaP~~f~~~lw~lvKpfL~~ktr~KI~~~~~~ 292 (614)
.++++|+|+|++|+|++|++.. +.+++.+++++|++||+||+++||||+|++| .++|++++|||+++|++||+|++++
T Consensus 181 ~ve~~~~IiD~~g~sl~~~~~~-~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f-~~~~~~ikpfl~~~t~~KI~~~~~~ 258 (320)
T 3q8g_A 181 LIETSCTVLDLKGISLSNAYHV-LSYIKDVADISQNYYPERMGKFYIIHSPFGF-STMFKMVKPFLDPVTVSKIFILGSS 258 (320)
T ss_dssp CCCCEEEEEECTTCCHHHHHHT-HHHHHHHHHHHHHHSTTCEEEEEEESCCTTH-HHHHTTTGGGSCHHHHHTEEECCTT
T ss_pred CcceeEEEEECCCCCHHHHHHH-HHHHHHHHHHHHhhCchhhceEEEECCCHHH-HHHHHHHHHhCCHHHhhhEEEeCCC
Confidence 8999999999999999998753 7889999999999999999999999999999 9999999999999999999999987
Q ss_pred chhHHHccCCCCCCCccCCCCCCCCC-CCCcccCCCCCCCcHHHHH
Q 007184 293 SLGKLLEVIDASQLPDFLGGSCTCSV-EGGCLRSNKGPWNEPEIMK 337 (614)
Q Consensus 293 ~~~~L~e~Id~s~LP~eyGGt~~~~~-~~gcl~~~~gpw~~p~i~~ 337 (614)
+.+.|.++||+++||++|||+++|++ +|||+.+|.|||+||++.+
T Consensus 259 ~~~~L~~~i~~~~LP~~yGG~~~~~~~~ggc~~~~~gpw~~~~~~~ 304 (320)
T 3q8g_A 259 YKKELLKQIPIENLPVKYGGTSVLHNPNDKFYYSDIGPWRDPRYIG 304 (320)
T ss_dssp HHHHHHHHSCGGGSBGGGTSCBCCSSTTSCGGGBCBSGGGCTTTCC
T ss_pred cHHHHHhhCChhhCChhhCCCCCCCCCCCCeecCCCCCCCChhhcC
Confidence 78999999999999999999999987 6999999999999997644
No 2
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=7.3e-54 Score=445.11 Aligned_cols=270 Identities=36% Similarity=0.652 Sum_probs=242.9
Q ss_pred CCCcccccCCCHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCccccchhh
Q 007184 62 VPSVPIEDVRDEREESAVLELRQKLLERDLLPPRQDDYHTLLRFLKAREFNIERTIQMWEEMLIWRKEYGTDTILEDFEF 141 (614)
Q Consensus 62 ~~~~~~eel~e~~e~~~l~~LR~~L~~~~~Lp~~~dD~~~LLRFLrArkfdvekA~~~l~~~l~WRk~~~~d~i~~d~~~ 141 (614)
.++....++ +++|+++|++||+||.++++ +...|| .+|+||||||+||+++|.+||++|++||++++++.+..+...
T Consensus 18 ~~~~~~~~l-~~~q~~~l~~lr~~l~~~~~-~~~~dd-~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~ 94 (296)
T 1aua_A 18 ALPGTPGNL-DSAQEKALAELRKLLEDAGF-IERLDD-STLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHY 94 (296)
T ss_dssp SCTTSTTTC-CTTHHHHHHHHHHHHHHTTC-CSSCSH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHCCC
T ss_pred cCCCCCCCC-CHHHHHHHHHHHHHHHhcCC-CCCCch-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcchhhhcccc
Confidence 345555566 56678999999999999884 555666 699999999999999999999999999999998888766544
Q ss_pred HHHHHHHhhcccccccCCCCCCcEEEEecCCCCcccccccccHHHHHHHHHHHHHHHHHhhCccchhhhcCCcCcEEEEE
Q 007184 142 EELEEVLQYYPQGYHGVDKEGRPVYIELLGKAHPSRLMRITTVDRYLKYHVQEFERALLERFPACSVAAKRRICSTTTIL 221 (614)
Q Consensus 142 ~el~~v~~~~p~g~~G~Dk~GrpV~i~rlg~~dp~kl~~~~t~~~~ir~~v~~lE~~l~~~~p~cs~~~~~~i~g~t~Ii 221 (614)
.+...+.++++++++|+|++||||+|+++|++|++++.+..+.+++++++++.+|.++...+++|+...+.+++++++|+
T Consensus 95 ~~~~~~~~~~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~ 174 (296)
T 1aua_A 95 DEKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIM 174 (296)
T ss_dssp TTHHHHGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEE
T ss_pred CcHHHHHHhCCceecccCCCCCEEEEEeeccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEE
Confidence 33345677888889999999999999999999999988888999999999999999998877888887778899999999
Q ss_pred eCCCCCcCCcchHHHHHHHHHHHhcccccccccceEEEEeCChhHHHHHHHHHhhcCChhhhheeEEcCCCchhHHHccC
Q 007184 222 DVQGLGMKHFTRTAANLLAAVAKVDNCYYPETLHQMFIVNAGPGFKKMLWPAAQKFLDPKSIAKIHVLEPKSLGKLLEVI 301 (614)
Q Consensus 222 D~~G~sl~~~~~~~~~~lk~i~kilq~~YPerLk~i~IINaP~~f~~~lw~lvKpfL~~ktr~KI~~~~~~~~~~L~e~I 301 (614)
|++|+|++|++.. +.+++.++.++|++||+||+++||||+|++| .++|+++||||+++|++||+|+++++.+.|.++|
T Consensus 175 D~~g~s~~~~~~~-~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f-~~~~~iikpfl~~~t~~KI~~~~~~~~~~L~~~i 252 (296)
T 1aua_A 175 DLKGISISSAYSV-MSYVREASYISQNYYPERMGKFYIINAPFGF-STAFRLFKPFLDPVTVSKIFILGSSYQKELLKQI 252 (296)
T ss_dssp ECTTCCHHHHHHH-HHHHHHHHHHHHHHSTTCEEEEEEESCCHHH-HHHHHHHGGGSCHHHHTTEEECCSCCHHHHTTTS
T ss_pred ECCCCCHHHHHHH-HHHHHHHHHHHHHhHHHhhCeEEEECchHHH-HHHHHHHHhhcCHhhcceEEEeCcccHHHHHhhC
Confidence 9999999999864 7899999999999999999999999999999 9999999999999999999999987789999999
Q ss_pred CCCCCCccCCCCCCCCC-CCCcccCCCCCCCcHHHH
Q 007184 302 DASQLPDFLGGSCTCSV-EGGCLRSNKGPWNEPEIM 336 (614)
Q Consensus 302 d~s~LP~eyGGt~~~~~-~~gcl~~~~gpw~~p~i~ 336 (614)
|+++||++|||+++|++ +|||+.++.|||++|++.
T Consensus 253 ~~~~LP~~yGG~~~~~~~~~g~~~~~~~~w~~~~~~ 288 (296)
T 1aua_A 253 PAENLPVKFGGKSEVDESKGGLYLSDIGPWRDPKYI 288 (296)
T ss_dssp CSSSSBGGGTSCBCCCGGGCCSTTCCCSGGGCGGGC
T ss_pred CHhhCcHHhCCCCCCCCCCCCceeCCCCCCCChhhc
Confidence 99999999999999987 589999999999999774
No 3
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=5.5e-47 Score=397.92 Aligned_cols=240 Identities=20% Similarity=0.313 Sum_probs=199.4
Q ss_pred cCCCcccccCCCHHH--HHHHHHHHHHHHcCCCCCC----------CCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 007184 61 RVPSVPIEDVRDERE--ESAVLELRQKLLERDLLPP----------RQDDYHTLLRFLKAREFNIERTIQMWEEMLIWRK 128 (614)
Q Consensus 61 ~~~~~~~eel~e~~e--~~~l~~LR~~L~~~~~Lp~----------~~dD~~~LLRFLrArkfdvekA~~~l~~~l~WRk 128 (614)
.+...+.+|++++++ +++|++||+||.++||+++ +.+|+.+|+||||||+||+++|++||.+|++||+
T Consensus 42 ~~~~~a~~eL~E~~~~~~~~l~~LR~wi~~~p~l~~~l~~~~~~~~~~~dD~~LlRFLRarkfdv~kA~~~L~~~l~wR~ 121 (316)
T 3hx3_A 42 HTLQKAKDELNEREETREEAVRELQEMVQAQAASGEELAVAVAERVQEKDSGFFLRFIRARKFNVGRAYELLRGYVNFRL 121 (316)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHhCCCccccccccccccCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 456788899988764 8999999999999999752 3344479999999999999999999999999999
Q ss_pred HcCCCccccchhhHHHHHHH-hhcccccccCCCCCCcEEEEecCCCCcccccccccHHHHHHHHHHHHHHHHHhhCccch
Q 007184 129 EYGTDTILEDFEFEELEEVL-QYYPQGYHGVDKEGRPVYIELLGKAHPSRLMRITTVDRYLKYHVQEFERALLERFPACS 207 (614)
Q Consensus 129 ~~~~d~i~~d~~~~el~~v~-~~~p~g~~G~Dk~GrpV~i~rlg~~dp~kl~~~~t~~~~ir~~v~~lE~~l~~~~p~cs 207 (614)
+++. +..+..+.++.... ..++.+++|+|++||||+|+++|++|++++ +.+++++++++.+|.++..
T Consensus 122 ~~~~--~~~~~~~~~i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~~----~~~~~~r~~~~~lE~~l~~------ 189 (316)
T 3hx3_A 122 QYPE--LFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEI----TFDEILQAYCFILEKLLEN------ 189 (316)
T ss_dssp HCGG--GTTTCCHHHHHHHHHTTSSEECSSCCTTSCEEEEEECTTCCTTTS----CHHHHHHHHHHHHHHHTTS------
T ss_pred hCch--hhcCCCHHHHHHHHHcCCccccCCCCCCCCEEEEEecccCCCCCC----CHHHHHHHHHHHHHHHHhc------
Confidence 9984 33333444554443 345667899999999999999999999987 8999999999999998754
Q ss_pred hhhcCCcCcEEEEEeCCCCCcCCcchHHHHHHHHHHHhcccccccccceEEEEeCChhHHHHHHHHHhhcCChhhhheeE
Q 007184 208 VAAKRRICSTTTILDVQGLGMKHFTRTAANLLAAVAKVDNCYYPETLHQMFIVNAGPGFKKMLWPAAQKFLDPKSIAKIH 287 (614)
Q Consensus 208 ~~~~~~i~g~t~IiD~~G~sl~~~~~~~~~~lk~i~kilq~~YPerLk~i~IINaP~~f~~~lw~lvKpfL~~ktr~KI~ 287 (614)
.+.++.|+|+|+|++|+|++|+....+..++.+++++|++||+||+++||||+|++| .++|+++||||+++|++||+
T Consensus 190 --~~~~v~g~v~IiD~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f-~~i~~ivkpfl~~kt~~KI~ 266 (316)
T 3hx3_A 190 --EETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYF-TTTYNVVKPFLKSKLLERVF 266 (316)
T ss_dssp --HHHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTH-HHHHHHHGGGCCHHHHTTEE
T ss_pred --ccCCcceEEEEEECCCCCHHHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHH-HHHHHHHHHhCCHHhhhheE
Confidence 245789999999999999999877778899999999999999999999999999999 99999999999999999999
Q ss_pred EcCCCchhHHHccCCCCCCCccCCCCCCC
Q 007184 288 VLEPKSLGKLLEVIDASQLPDFLGGSCTC 316 (614)
Q Consensus 288 ~~~~~~~~~L~e~Id~s~LP~eyGGt~~~ 316 (614)
|++++ .+.|.++||+++||++|||++++
T Consensus 267 ~~~~~-~~~L~~~I~~~~LP~eyGG~~~~ 294 (316)
T 3hx3_A 267 VHGDD-LSGFYQEIDENILPSDFGGTLPK 294 (316)
T ss_dssp EEETC-CHHHHHHSCGGGSBGGGTSSBCC
T ss_pred EeCCC-HHHHHhhCCHhhCcHhhCCCCCC
Confidence 99865 47999999999999999999986
No 4
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=1.4e-46 Score=382.61 Aligned_cols=250 Identities=19% Similarity=0.272 Sum_probs=213.0
Q ss_pred CHHHHHHHHHHHHHHHcCC--CCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCccccchhhHHHHHH-H
Q 007184 72 DEREESAVLELRQKLLERD--LLPPRQDDYHTLLRFLKAREFNIERTIQMWEEMLIWRKEYGTDTILEDFEFEELEEV-L 148 (614)
Q Consensus 72 e~~e~~~l~~LR~~L~~~~--~Lp~~~dD~~~LLRFLrArkfdvekA~~~l~~~l~WRk~~~~d~i~~d~~~~el~~v-~ 148 (614)
++.++++|++||+|+.+++ ++|...+| .+|+|||||++||+++|.+||++|++||++++. +..+..+.++... .
T Consensus 5 s~~~~~~l~~lr~~l~~~~~~~~~~~~dd-~~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~~--i~~~~~~~~~~~~~~ 81 (262)
T 1r5l_A 5 SPLLQPGLAALRRRAREAGVPLAPLPLTD-SFLLRFLRARDFDLDLAWRLLKNYYKWRAECPE--ISADLHPRSIIGLLK 81 (262)
T ss_dssp ----CTTHHHHHHHHHHHTCCCSSSCCCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCHH--HHSCCCGGGTHHHHH
T ss_pred cHHHHHHHHHHHHHHHhCCcccCCCCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChH--hhhcCChHHHHHHHH
Confidence 4567789999999999765 55666666 699999999999999999999999999999973 2222222333322 2
Q ss_pred hhcccccccCCCCCCcEEEEecCCCCcccccccccHHHHHHHHHHHHHHHHHhhCccchhhhcCCcCcEEEEEeCCCCCc
Q 007184 149 QYYPQGYHGVDKEGRPVYIELLGKAHPSRLMRITTVDRYLKYHVQEFERALLERFPACSVAAKRRICSTTTILDVQGLGM 228 (614)
Q Consensus 149 ~~~p~g~~G~Dk~GrpV~i~rlg~~dp~kl~~~~t~~~~ir~~v~~lE~~l~~~~p~cs~~~~~~i~g~t~IiD~~G~sl 228 (614)
..+..+++|+|++||||+|+++|++|++++ +..++++++++.+|.++.. .+.++.|+++|+|++|+|+
T Consensus 82 ~g~~~~l~g~D~~GrpV~i~~~~~~d~~~~----~~~~~~r~~~~~~E~~~~~--------~~~~~~g~~~I~D~~g~s~ 149 (262)
T 1r5l_A 82 AGYHGVLRSRDPTGSKVLIYRIAHWDPKVF----TAYDVFRVSLITSELIVQE--------VETQRNGIKAIFDLEGWQF 149 (262)
T ss_dssp TTCEEECSSCCTTCCEEEEEEGGGCCTTTS----CHHHHHHHHHHHHHHHTTS--------HHHHHHCEEEEEECTTCCH
T ss_pred cCCccCCCCcCCCCCEEEEEeccccCcccC----CHHHHHHHHHHHHHHHHhC--------hhhcccceEEEEECCCCCH
Confidence 334556789999999999999999999987 8899999999999987654 2345789999999999999
Q ss_pred CCcchHHHHHHHHHHHhcccccccccceEEEEeCChhHHHHHHHHHhhcCChhhhheeEEcCCCchhHHHccCCCCCCCc
Q 007184 229 KHFTRTAANLLAAVAKVDNCYYPETLHQMFIVNAGPGFKKMLWPAAQKFLDPKSIAKIHVLEPKSLGKLLEVIDASQLPD 308 (614)
Q Consensus 229 ~~~~~~~~~~lk~i~kilq~~YPerLk~i~IINaP~~f~~~lw~lvKpfL~~ktr~KI~~~~~~~~~~L~e~Id~s~LP~ 308 (614)
+|+++..++.++.+++++|++||+||+++||||+|++| .++|++++|||+++|++||+|+++++.+.|.++|| ++||+
T Consensus 150 ~~~~~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f-~~~~~~vkpfl~~~t~~Ki~~~~~~~~~~L~~~i~-~~LP~ 227 (262)
T 1r5l_A 150 SHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIF-HAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFP-DILPL 227 (262)
T ss_dssp HHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGG-HHHHHHHGGGSCHHHHTTEEECCSSCHHHHHHHST-TTSCG
T ss_pred HHHhccCHHHHHHHHHHHHhhCChhhceEEEEeCCHHH-HHHHHHHHHhcCHHHHhheEEeCCCcHHHHHHHhh-hhCcH
Confidence 99987778999999999999999999999999999999 99999999999999999999998877899999999 99999
Q ss_pred cCCCCCCCCCCCCcccCCCCCCCcHHHHHHHhhhhhhhhhhccccccc
Q 007184 309 FLGGSCTCSVEGGCLRSNKGPWNEPEIMKLVHNAGATVVRQVSRVHDD 356 (614)
Q Consensus 309 eyGGt~~~~~~~gcl~~~~gpw~~p~i~~~~~~~~~~~~~~~~~~~~~ 356 (614)
+|||++++ +.++...|...+..+++++.+.
T Consensus 228 ~yGG~~~~------------------~~~~~~~w~~~l~~~~~~~~~~ 257 (262)
T 1r5l_A 228 EYGGEEFS------------------MEDICQEWTNFIMKSEDYLSSI 257 (262)
T ss_dssp GGTCSSCC------------------HHHHHHHHHHHHHHTHHHHHHT
T ss_pred hhCCCCCC------------------HHHHHHHHHHHHHHHHHHHHHh
Confidence 99999876 7888889999999999887654
No 5
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=1.4e-45 Score=398.90 Aligned_cols=248 Identities=28% Similarity=0.416 Sum_probs=218.9
Q ss_pred CCcccccCCCHHHHHHHHHHHHHHHcC-CCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCccccchhh
Q 007184 63 PSVPIEDVRDEREESAVLELRQKLLER-DLLPPRQDDYHTLLRFLKAREFNIERTIQMWEEMLIWRKEYGTDTILEDFEF 141 (614)
Q Consensus 63 ~~~~~eel~e~~e~~~l~~LR~~L~~~-~~Lp~~~dD~~~LLRFLrArkfdvekA~~~l~~~l~WRk~~~~d~i~~d~~~ 141 (614)
|++...++ ++.|+++|++||+||.++ +++|. .|| .+||||||||+||+++|.+||++|++||++++++.+..+. .
T Consensus 1 ~~g~~~~l-~~~q~~~l~~lr~~l~~~~~~l~~-~dD-~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~-~ 76 (403)
T 1olm_A 1 MSGRVGDL-SPRQKEALAKFRENVQDVLPALPN-PDD-YFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISWQ-P 76 (403)
T ss_dssp CCSBTTBC-CHHHHHHHHHHHHHHGGGGGGSSC-CCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGGSC-C
T ss_pred CCCCccCC-CHHHHHHHHHHHHHHHhhccCCCC-CCh-hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCcccccC-C
Confidence 34556666 688899999999999987 45664 566 6999999999999999999999999999999988776532 2
Q ss_pred HHHHHHHhhcccccccCCCCCCcEEEEecCCCCcccccccccHHHHHHHHHHHHHHHHHhhCccchhhhcCCcCcEEEEE
Q 007184 142 EELEEVLQYYPQGYHGVDKEGRPVYIELLGKAHPSRLMRITTVDRYLKYHVQEFERALLERFPACSVAAKRRICSTTTIL 221 (614)
Q Consensus 142 ~el~~v~~~~p~g~~G~Dk~GrpV~i~rlg~~dp~kl~~~~t~~~~ir~~v~~lE~~l~~~~p~cs~~~~~~i~g~t~Ii 221 (614)
++ .+..+++++++|+|++||||+|+++|++|++++++..+.+++++++++.+|.++..+. .|+...+.++.|+++|+
T Consensus 77 ~~--~~~~~~~~~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~~-~~s~~~g~~v~~~~~I~ 153 (403)
T 1olm_A 77 PE--VIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECA-HQTTKLGRKVETITIIY 153 (403)
T ss_dssp CH--HHHHHCCBEEEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHH-HHHHHHTSCCCCEEEEE
T ss_pred HH--HHHHhCCceeeccCCCcCEEEEEecCCCChHHhhccCCHHHHHHHHHHHHHHHHHHHH-hhHHhhCCcccceEEEE
Confidence 22 3556788889999999999999999999999877777999999999999999988642 34444455789999999
Q ss_pred eCCCCCcCCcchHHHHHHHHHHHhcccccccccceEEEEeCChhHHHHHHHHHhhcCChhhhheeEEcCCCchhHHHccC
Q 007184 222 DVQGLGMKHFTRTAANLLAAVAKVDNCYYPETLHQMFIVNAGPGFKKMLWPAAQKFLDPKSIAKIHVLEPKSLGKLLEVI 301 (614)
Q Consensus 222 D~~G~sl~~~~~~~~~~lk~i~kilq~~YPerLk~i~IINaP~~f~~~lw~lvKpfL~~ktr~KI~~~~~~~~~~L~e~I 301 (614)
|++|++++|+++..+.+++.+++++|++||+||+++||||+|++| .++|+++||||+++|++||+|+++++.+.|.++|
T Consensus 154 D~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f-~~i~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~I 232 (403)
T 1olm_A 154 DCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLF-PVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHI 232 (403)
T ss_dssp ECTTCCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTH-HHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTTS
T ss_pred ECCCCCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHH-HHHHHHHHhhcCHhhhceEEEEChhHHHHHHhhc
Confidence 999999999988888999999999999999999999999999999 9999999999999999999999877778999999
Q ss_pred CCCCCCccCCCCCCCCC
Q 007184 302 DASQLPDFLGGSCTCSV 318 (614)
Q Consensus 302 d~s~LP~eyGGt~~~~~ 318 (614)
|+++||++|||++++++
T Consensus 233 ~~~~LP~~yGG~~~~~~ 249 (403)
T 1olm_A 233 SPDQVPVEYGGTMTDPD 249 (403)
T ss_dssp CGGGSBGGGTSSBCCTT
T ss_pred ChhhCchhhCCCcCCCC
Confidence 99999999999998853
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.05 E-value=1.6e-10 Score=117.45 Aligned_cols=128 Identities=14% Similarity=0.177 Sum_probs=105.7
Q ss_pred ccCCCCCCcEEEEecCCCCcccccccccHHHHHHHHHHHHHHHHHhhCccchhhhcCCcCcEEEEEeCCCCCcCCcchHH
Q 007184 156 HGVDKEGRPVYIELLGKAHPSRLMRITTVDRYLKYHVQEFERALLERFPACSVAAKRRICSTTTILDVQGLGMKHFTRTA 235 (614)
Q Consensus 156 ~G~Dk~GrpV~i~rlg~~dp~kl~~~~t~~~~ir~~v~~lE~~l~~~~p~cs~~~~~~i~g~t~IiD~~G~sl~~~~~~~ 235 (614)
.|.|++||||+++.++++++..+ +.+.++.|.+..++.... ..+++|+|++|++..+.. .
T Consensus 16 ~G~d~dGrpViv~~~~~l~~~~~----D~e~Ll~~vl~tl~~~~~--------------~~y~lV~d~T~~~~~n~p--~ 75 (256)
T 3pg7_A 16 AGTSKAGNPIFYYVARRFKTGQI----NGDLLIYHVLLTLKPYYA--------------KPYEIVVDLTHTGPSNRF--K 75 (256)
T ss_dssp EEECTTSCEEEEEEGGGCCBTTB----CHHHHHHHHHHHHTTTTT--------------SCEEEEEECTTCCGGGCC--C
T ss_pred cCcCCCCCEEEEEEeecCCCCCC----CHHHHHHHHHHHHHHhcC--------------CCeEEEEECCCCCcccCC--c
Confidence 38999999999999999998766 788888777776664432 368999999999987654 3
Q ss_pred HHHHHHHHHhcccccccccceEEEEeCChhHHHHHHH-HHhhcCChhhhheeEEcCCCchhHHHccCCCCCC
Q 007184 236 ANLLAAVAKVDNCYYPETLHQMFIVNAGPGFKKMLWP-AAQKFLDPKSIAKIHVLEPKSLGKLLEVIDASQL 306 (614)
Q Consensus 236 ~~~lk~i~kilq~~YPerLk~i~IINaP~~f~~~lw~-lvKpfL~~ktr~KI~~~~~~~~~~L~e~Id~s~L 306 (614)
...++.+..++...|...|+++||+|++++| +..|. +.++|.+.+...|++++++ ..+|.++|+.++|
T Consensus 76 ~~wl~~~~~llp~~~~kNlk~~Yivnpt~~~-k~~~~~~~~~~~~~k~~~Ki~fv~s--l~eL~~~i~~~~L 144 (256)
T 3pg7_A 76 TDFLSKWFVVFPGFAYDNVSAVYIYNCNSWV-REYTKYHERLLTGLKGSKRLVFIDC--PGKLAEHIEHEQQ 144 (256)
T ss_dssp HHHHHHTTTSSCHHHHHTEEEEEEESCCHHH-HHHHHHTHHHHTTTTTCTTEEEESS--TTGGGGTSCGGGC
T ss_pred HHHHHHHHHHcCHHHHhcccEEEEECCCHHH-HHHHHHHhccccccccCCcEEEECC--HHHHHhhcCHHHc
Confidence 6788999999999999999999999999999 65544 4577777788899999964 7999999987665
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=98.78 E-value=3.5e-09 Score=109.35 Aligned_cols=128 Identities=14% Similarity=0.179 Sum_probs=97.5
Q ss_pred ccCCCCCCcEEEEecCCCCcccccccccHHHHHHHHHHHHHHHHHhhCccchhhhcCCcCcEEEEEeCCCCCcCCcchHH
Q 007184 156 HGVDKEGRPVYIELLGKAHPSRLMRITTVDRYLKYHVQEFERALLERFPACSVAAKRRICSTTTILDVQGLGMKHFTRTA 235 (614)
Q Consensus 156 ~G~Dk~GrpV~i~rlg~~dp~kl~~~~t~~~~ir~~v~~lE~~l~~~~p~cs~~~~~~i~g~t~IiD~~G~sl~~~~~~~ 235 (614)
.|.|++|+||+++.+++++...+ +.+.++-+.+..++.... ..+++|+|++|++..+-. .
T Consensus 35 ~g~d~dG~PViv~~~~~~~~~~~----D~e~Lly~il~tl~~~~~--------------~~y~lV~D~T~~~~~n~p--~ 94 (290)
T 3peg_A 35 AGTSKAGNPIFYYVARRFKTGQI----NGDLLIYHVLLTLKPYYA--------------KPYEIVVDLTHTGPSNRF--K 94 (290)
T ss_dssp EEECTTSCEEEEEEGGGCCBTTB----CHHHHHHHHHHHHTTTTT--------------SCEEEEEECTTCCGGGCC--C
T ss_pred eccCCCCCEEEEEEeecCCccCC----CHHHHHHHHHHHHHHhcC--------------CCeEEEEEcCCCCccCCC--h
Confidence 37899999999999999998766 777777777666654332 468999999999987644 3
Q ss_pred HHHHHHHHHhcccccccccceEEEEeCChhHHHHHHHHHhhcCChhhhheeEEcCCCchhHHHccCCCCC
Q 007184 236 ANLLAAVAKVDNCYYPETLHQMFIVNAGPGFKKMLWPAAQKFLDPKSIAKIHVLEPKSLGKLLEVIDASQ 305 (614)
Q Consensus 236 ~~~lk~i~kilq~~YPerLk~i~IINaP~~f~~~lw~lvKpfL~~ktr~KI~~~~~~~~~~L~e~Id~s~ 305 (614)
...++.+..++...|+..++++||+|++++||..+|.+.++|.+.+..+|+.++++ ...|..+++.++
T Consensus 95 ~~~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~--~~~L~~~i~~~~ 162 (290)
T 3peg_A 95 TDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC--PGKLAEHIEHEQ 162 (290)
T ss_dssp HHHHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESS--SCC---------
T ss_pred HHHHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCC--HHHHHhhCCHHH
Confidence 67889999999999999999999999999994456667788888899999999864 455888888765
No 8
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=74.20 E-value=3.5 Score=28.20 Aligned_cols=16 Identities=31% Similarity=0.590 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhcCC
Q 007184 537 ERLQKLEKAYEELRHK 552 (614)
Q Consensus 537 kRl~eLE~k~~~L~~K 552 (614)
+||..||+||++|-.+
T Consensus 1 eRMnQLEdKvEeLl~~ 16 (34)
T 2bni_A 1 XRMKQIEDKLEEILSK 16 (34)
T ss_dssp --CHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHc
Confidence 5899999999988643
No 9
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=71.26 E-value=4.9 Score=27.24 Aligned_cols=14 Identities=21% Similarity=0.477 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhcC
Q 007184 538 RLQKLEKAYEELRH 551 (614)
Q Consensus 538 Rl~eLE~k~~~L~~ 551 (614)
||..||+||++|-.
T Consensus 1 RMnQLEdKvEeLl~ 14 (33)
T 3c3g_A 1 RMKXIEXKLXEIXS 14 (33)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHH
Confidence 78889999988754
No 10
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=70.36 E-value=1.2 Score=30.37 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhcCC
Q 007184 537 ERLQKLEKAYEELRHK 552 (614)
Q Consensus 537 kRl~eLE~k~~~L~~K 552 (614)
+||..||+||++|-++
T Consensus 1 ~RMnQLEdkVEeLl~~ 16 (34)
T 2hy6_A 1 MKVKQLADAVEELASA 16 (34)
T ss_dssp --CHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHh
Confidence 5888999999887643
No 11
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=69.98 E-value=5.4 Score=27.22 Aligned_cols=30 Identities=30% Similarity=0.455 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhHHhh
Q 007184 537 ERLQKLEKAYEELRHKPAAIPLEKEQMLVESLQRIKSV 574 (614)
Q Consensus 537 kRl~eLE~k~~~L~~KP~~mP~EKEe~L~aa~~Ri~~l 574 (614)
+||..||+||++|-.+ |+ -|.+-+.|.++|
T Consensus 1 eRMnQLE~kVEeLl~~-------n~-~Le~eV~rLk~l 30 (34)
T 2oxj_A 1 XRMXQLEXKVXELLXK-------NX-HLEXEVXRLKXL 30 (34)
T ss_dssp -CHHHHHHHHHHHHHH-------HH-HHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHh-------hh-hHHHHHHHHHHH
Confidence 5899999999988543 32 244455555543
No 12
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=69.49 E-value=6.5 Score=26.78 Aligned_cols=15 Identities=20% Similarity=0.430 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHhcC
Q 007184 537 ERLQKLEKAYEELRH 551 (614)
Q Consensus 537 kRl~eLE~k~~~L~~ 551 (614)
+||..||+||++|-.
T Consensus 1 eRMnQLEdKVEeLl~ 15 (34)
T 3c3f_A 1 XRMXQIEXKLEXILS 15 (34)
T ss_dssp -CHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHh
Confidence 589999999988754
No 13
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=68.28 E-value=7.2 Score=26.43 Aligned_cols=14 Identities=36% Similarity=0.508 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhcC
Q 007184 538 RLQKLEKAYEELRH 551 (614)
Q Consensus 538 Rl~eLE~k~~~L~~ 551 (614)
||..||+||++|-+
T Consensus 1 RMnQLEdKVEell~ 14 (33)
T 2wq1_A 1 RMKQLEDKIEENTS 14 (33)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHH
Confidence 78889999988754
No 14
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=67.61 E-value=5.4 Score=27.26 Aligned_cols=15 Identities=27% Similarity=0.470 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhcC
Q 007184 537 ERLQKLEKAYEELRH 551 (614)
Q Consensus 537 kRl~eLE~k~~~L~~ 551 (614)
.||..||+||++|-.
T Consensus 1 ~RM~QLEdKVEeLl~ 15 (34)
T 1uo4_A 1 XRMKQIEDKGEEILS 15 (34)
T ss_dssp --CHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHH
Confidence 388899999988744
No 15
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=62.39 E-value=7.2 Score=26.51 Aligned_cols=14 Identities=43% Similarity=0.555 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHhcC
Q 007184 538 RLQKLEKAYEELRH 551 (614)
Q Consensus 538 Rl~eLE~k~~~L~~ 551 (614)
||..||+||++|-.
T Consensus 1 RM~QLE~kVEeLl~ 14 (33)
T 3m48_A 1 RMAQLEAKVEELLS 14 (33)
T ss_dssp --CHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHH
Confidence 78889999988743
No 16
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=59.61 E-value=11 Score=25.99 Aligned_cols=14 Identities=29% Similarity=0.529 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHhc
Q 007184 537 ERLQKLEKAYEELR 550 (614)
Q Consensus 537 kRl~eLE~k~~~L~ 550 (614)
+||..||.||++|-
T Consensus 1 eRMnQLE~kVEeLl 14 (36)
T 1kd8_A 1 XEVKQLEAEVEEIE 14 (36)
T ss_dssp -CCHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHH
Confidence 57788888887764
No 17
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=58.77 E-value=47 Score=27.51 Aligned_cols=67 Identities=19% Similarity=0.251 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCc----hhHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007184 537 ERLQKLEKAYEELRHKPAAIP----LEKEQMLVESLQRIKSVESDLEKTKKVLHATVVKQHEIAEALENLR 603 (614)
Q Consensus 537 kRl~eLE~k~~~L~~KP~~mP----~EKEe~L~aa~~Ri~~lE~eL~~TKKaL~~tl~kQ~El~~yie~~k 603 (614)
+|-.+|=+.|..|..-=|.+| ..|-.+|..|++=|+.|+.+...-..-...--.+|.+|..-|+.++
T Consensus 16 ~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 16 QRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 677888888888887766565 5799999999999999998877655555555566677776666543
No 18
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=56.55 E-value=41 Score=27.25 Aligned_cols=64 Identities=9% Similarity=0.226 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCc---hhHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007184 537 ERLQKLEKAYEELRHKPAAIP---LEKEQMLVESLQRIKSVESDLEKTKKVLHATVVKQHEIAEALE 600 (614)
Q Consensus 537 kRl~eLE~k~~~L~~KP~~mP---~EKEe~L~aa~~Ri~~lE~eL~~TKKaL~~tl~kQ~El~~yie 600 (614)
+|...|=+.+..|..=-|..| ..|-.+|..|++=|+.|+.+...-+.-+.+.-..+.+|-+-|.
T Consensus 12 ~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 12 KRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888877644332 3899999999999999998877766555555444555544443
No 19
>3a8y_C BAG family molecular chaperone regulator 5; BAG domain, HSP70, ATPase domain, protein complex, triple helix, structural genomics, NPPSFA; 2.30A {Homo sapiens}
Probab=54.88 E-value=26 Score=31.75 Aligned_cols=67 Identities=15% Similarity=0.221 Sum_probs=52.0
Q ss_pred hhhhHHHHHHHHHHHHHHHhcCCCCCCchhHH-----HHHHHHHHhHHhhHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 007184 530 DLVVPCIERLQKLEKAYEELRHKPAAIPLEKE-----QMLVESLQRIKSVESD----LEKTKKVLHATVVKQHEIAEALE 600 (614)
Q Consensus 530 ~~~~~~~kRl~eLE~k~~~L~~KP~~mP~EKE-----e~L~aa~~Ri~~lE~e----L~~TKKaL~~tl~kQ~El~~yie 600 (614)
..+..+..++++|+..|+....| +.||| |||.--+=+.|+||.+ +-..+|+ ++-+=.-++++||
T Consensus 34 ~aI~~V~~eVd~L~~eV~~F~G~----~~dkey~~L~E~L~k~LLKLD~IdteGd~~vR~aRK~---aVk~VQ~~Le~LD 106 (142)
T 3a8y_C 34 KAVWNVLGNLSEIQGEVLSFDGN----RTDKNYIRLEELLTKQLLALDAVDPQGEEKCKAARKQ---AVRLAQNILSYLD 106 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSC----TTSHHHHHHHHHHHHHHHHHHTCCCTTCHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC----chHHHHHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHH---HHHHHHHHHHHHH
Confidence 36788999999999999999777 56774 7999999999999887 4444444 4555566788888
Q ss_pred HHh
Q 007184 601 NLR 603 (614)
Q Consensus 601 ~~k 603 (614)
.+.
T Consensus 107 ~k~ 109 (142)
T 3a8y_C 107 LKS 109 (142)
T ss_dssp HHH
T ss_pred Hhh
Confidence 765
No 20
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=54.13 E-value=23 Score=24.50 Aligned_cols=16 Identities=31% Similarity=0.588 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhcCC
Q 007184 537 ERLQKLEKAYEELRHK 552 (614)
Q Consensus 537 kRl~eLE~k~~~L~~K 552 (614)
+||..||+||++|-.+
T Consensus 1 eRMnQLE~KVEeLl~~ 16 (36)
T 1kd8_B 1 XKVKQLKAKVEELKSK 16 (36)
T ss_dssp -CHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHH
Confidence 5888999999887543
No 21
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=50.47 E-value=22 Score=24.25 Aligned_cols=16 Identities=25% Similarity=0.439 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhcCC
Q 007184 537 ERLQKLEKAYEELRHK 552 (614)
Q Consensus 537 kRl~eLE~k~~~L~~K 552 (614)
+||..||.||++|-+|
T Consensus 1 ~RMnQledKvEel~~~ 16 (34)
T 2r2v_A 1 MKLKQVADKLEEVASK 16 (34)
T ss_dssp -CHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHH
Confidence 4888999999888654
No 22
>1ugo_A BCL2-associated athanogene 5; triple helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics, chaperone; NMR {Mus musculus} SCOP: a.7.7.1
Probab=50.10 E-value=34 Score=29.24 Aligned_cols=69 Identities=14% Similarity=0.208 Sum_probs=47.6
Q ss_pred hhhhHHHHHHHHHHHHHHHhcCCCCCCchhH-----HHHHHHHHHhHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 007184 530 DLVVPCIERLQKLEKAYEELRHKPAAIPLEK-----EQMLVESLQRIKSVESDLEKT-KKVLHATVVKQHEIAEALENL 602 (614)
Q Consensus 530 ~~~~~~~kRl~eLE~k~~~L~~KP~~mP~EK-----Ee~L~aa~~Ri~~lE~eL~~T-KKaL~~tl~kQ~El~~yie~~ 602 (614)
..+..+...+.+|+..|+....|+. || +|||.--+=.+|+||.|=..+ +-+=.+++-+=.-++++||++
T Consensus 18 ~kI~~I~~ev~~L~~~V~~f~g~k~----dkey~~L~E~L~k~LLkLD~IeteG~~~iR~~RK~~Vk~iQ~~l~~LD~k 92 (99)
T 1ugo_A 18 SRLQEIQREVKAIEPQVVGFSGLSD----DKNYKRLERILTKQLFEIDSVDTEGKGDIQQARKRAAQETERLLKELEQN 92 (99)
T ss_dssp HHHHHHHHHHHHSHHHHHTCCCCTT----SSHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCch----hHHHHHHHHHHHHHHHHHcCcCcCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3678888999999999999988873 55 488888899999998773321 222223333334566666653
No 23
>1m62_A BAG-family molecular chaperone regulator-4; BAG domain, SODD, silencer of death domains, HSP70/HSC70 CO-chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=48.40 E-value=60 Score=27.01 Aligned_cols=66 Identities=32% Similarity=0.451 Sum_probs=48.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHhcCCCCCCchhHH-----HHHHHHHHhHHhhHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 007184 529 EDLVVPCIERLQKLEKAYEELRHKPAAIPLEKE-----QMLVESLQRIKSVESD----LEKTKKVLHATVVKQHEIAEAL 599 (614)
Q Consensus 529 ~~~~~~~~kRl~eLE~k~~~L~~KP~~mP~EKE-----e~L~aa~~Ri~~lE~e----L~~TKKaL~~tl~kQ~El~~yi 599 (614)
-.-+..+...+.+|+..|+....| +.||| |||.--+=.+|++|.| +-..+|+. +-+=.-++++|
T Consensus 10 ~~~I~~I~~ev~~L~~~V~~f~g~----~~dkey~~L~E~L~k~LLkLD~Ie~eG~~~~R~~RK~~---Vk~iQ~~l~~L 82 (87)
T 1m62_A 10 IKKIIHVLEKVQYLEQEVEEFVGK----KTDKAYWLLEEMLTKELLELDSVETGGQDSVRQARKEA---VCKIQAILEKL 82 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCC----TTSHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC----cchHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHHH---HHHHHHHHHHH
Confidence 346788899999999999999987 46674 7899999999999887 55555543 33334455666
Q ss_pred HH
Q 007184 600 EN 601 (614)
Q Consensus 600 e~ 601 (614)
|.
T Consensus 83 D~ 84 (87)
T 1m62_A 83 EK 84 (87)
T ss_dssp HH
T ss_pred Hh
Confidence 55
No 24
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=43.77 E-value=23 Score=27.28 Aligned_cols=40 Identities=20% Similarity=0.299 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 007184 76 ESAVLELRQKLLERDLLPPRQDDYHTLLRFLKAREFNIERTIQMWEEM 123 (614)
Q Consensus 76 ~~~l~~LR~~L~~~~~Lp~~~dD~~~LLRFLrArkfdvekA~~~l~~~ 123 (614)
++++++|++.. |. .+. ..+-.-|++++.|++.|..+|.++
T Consensus 10 ee~l~~L~emF------P~-ld~-~~I~~vL~a~~gdvd~aI~~LL~m 49 (59)
T 1wgl_A 10 EEDLKAIQDMF------PN-MDQ-EVIRSVLEAQRGNKDAAINSLLQM 49 (59)
T ss_dssp HHHHHHHHHHC------SS-SCH-HHHHHHHTTTTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHC------CC-CCH-HHHHHHHHHcCCCHHHHHHHHHcC
Confidence 35677777765 33 344 589999999999999999988653
No 25
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=38.37 E-value=78 Score=25.60 Aligned_cols=60 Identities=18% Similarity=0.212 Sum_probs=42.9
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHH
Q 007184 531 LVVPCIERLQKLEKAYEELRHKPAAIPLEKEQMLVESLQRIKSVESDLEKTKKVLHATVVKQHE 594 (614)
Q Consensus 531 ~~~~~~kRl~eLE~k~~~L~~KP~~mP~EKEe~L~aa~~Ri~~lE~eL~~TKKaL~~tl~kQ~E 594 (614)
+.-....|+..+|.++.....+- ...|+-+.+=-.||..||.||+++.-.|..+..+-++
T Consensus 14 e~d~a~~~~~~~e~~l~~~e~~~----~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 14 DKENALDRAEQAEADKKAAEERS----KQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777766655432 3456667777788999999999999999888777544
No 26
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.87 E-value=47 Score=26.27 Aligned_cols=43 Identities=19% Similarity=0.206 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 007184 73 EREESAVLELRQKLLERDLLPPRQDDYHTLLRFLKAREFNIERTIQMWEEM 123 (614)
Q Consensus 73 ~~e~~~l~~LR~~L~~~~~Lp~~~dD~~~LLRFLrArkfdvekA~~~l~~~ 123 (614)
.+..+++++|++.. |. .+. ..+..-|+++++|++.|...|..+
T Consensus 16 ~~~~~~v~~L~~MF------P~-lD~-~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 16 LEFNQAMDDFKTMF------PN-MDY-DIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp CCSHHHHHHHHHHC------SS-SCH-HHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHC------CC-CCH-HHHHHHHHHcCCCHHHHHHHHHhc
Confidence 34467788888776 33 333 588999999999999999988765
No 27
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=37.05 E-value=1.3e+02 Score=22.50 Aligned_cols=46 Identities=13% Similarity=0.158 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007184 560 KEQMLVESLQRIKSVESDLEKTKKVLHATVVKQHEIAEALENLRQS 605 (614)
Q Consensus 560 KEe~L~aa~~Ri~~lE~eL~~TKKaL~~tl~kQ~El~~yie~~k~~ 605 (614)
.++-+...=.+++.++.++..+|..|..+...+..+.+.|.+++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556788899999999999999999999999999888643
No 28
>1uk5_A BAG-family molecular chaperone regulator-3; triple helix bandle, CAIR-1, BIS, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.7.7.1
Probab=36.51 E-value=72 Score=27.76 Aligned_cols=68 Identities=26% Similarity=0.358 Sum_probs=49.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHhcCCCCCCchhHH-----HHHHHHHHhHHhhHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 007184 529 EDLVVPCIERLQKLEKAYEELRHKPAAIPLEKE-----QMLVESLQRIKSVESD----LEKTKKVLHATVVKQHEIAEAL 599 (614)
Q Consensus 529 ~~~~~~~~kRl~eLE~k~~~L~~KP~~mP~EKE-----e~L~aa~~Ri~~lE~e----L~~TKKaL~~tl~kQ~El~~yi 599 (614)
-..+..+...+.+|+..|+....++ .||| |||.--+=.+|+||.| +-..+|+ ++-+=.-++++|
T Consensus 29 ~~~I~~I~~eV~~L~~qV~~f~g~k----~dkey~~L~E~L~k~LLkLD~IeteG~~~vR~aRK~---aVk~iQ~~l~~L 101 (111)
T 1uk5_A 29 VLKVEAILEKVQGLEQAVDSFEGKK----TDKKYLMIEEYLTKELLALDSVDPEGRADVRQARRD---GVRKVQTILEKL 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSCS----SSHHHHHHHHHHHHHHHHHHSCCCSSCHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCc----chHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHH---HHHHHHHHHHHH
Confidence 3457788888899999999998876 6674 7899999999999987 4444444 343445566667
Q ss_pred HHHh
Q 007184 600 ENLR 603 (614)
Q Consensus 600 e~~k 603 (614)
|.+.
T Consensus 102 D~k~ 105 (111)
T 1uk5_A 102 EQKA 105 (111)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 6643
No 29
>1nyh_A Regulatory protein SIR4; coiled-coil, transcription regulation, repressor, transcript repressor; 3.10A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=36.45 E-value=78 Score=27.82 Aligned_cols=41 Identities=29% Similarity=0.366 Sum_probs=32.4
Q ss_pred HhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 007184 569 QRIKSVESDLEKTKKVLHATVVKQHEIAEALENLRQSKFHQ 609 (614)
Q Consensus 569 ~Ri~~lE~eL~~TKKaL~~tl~kQ~El~~yie~~k~~k~~~ 609 (614)
-||-+|.-||--|||.|+.|-..--|--|-|.++-++.|+.
T Consensus 119 iritslqgdltftkkclenarsqisekdakinklmekdfqv 159 (166)
T 1nyh_A 119 IRITSLQGDLTFTKKCLENARSQISEKDAKINKLMEKDFQV 159 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-----
T ss_pred eeeeeeccchhhHHHHHHHHHhhhhhhhHHHHHHHHHhhcc
Confidence 48999999999999999999888888888888887777765
No 30
>1m7k_A Silencer of death domains; three helix bundle, chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=34.03 E-value=80 Score=26.89 Aligned_cols=68 Identities=31% Similarity=0.434 Sum_probs=49.4
Q ss_pred cchhhhhHHHHHHHHHHHHHHHhcCCCCCCchhHH-----HHHHHHHHhHHhhHHH----HHHHHHHHHHHHHHHHHHHH
Q 007184 527 NEEDLVVPCIERLQKLEKAYEELRHKPAAIPLEKE-----QMLVESLQRIKSVESD----LEKTKKVLHATVVKQHEIAE 597 (614)
Q Consensus 527 ~~~~~~~~~~kRl~eLE~k~~~L~~KP~~mP~EKE-----e~L~aa~~Ri~~lE~e----L~~TKKaL~~tl~kQ~El~~ 597 (614)
..-.-+..+...+.+|+..|+.+..++ .||| |||.--+=.+|+||.| +-..+|++ +-+=.-+++
T Consensus 21 ~~~~kI~~I~~ev~~L~~~V~~f~G~k----~dkey~~L~E~L~k~LLkLD~IeteG~~~vR~~RK~~---Vk~iQ~~l~ 93 (99)
T 1m7k_A 21 PSIKKIIHVLEKVQYLEQEVEEFVGKK----TDKAYWLLEEMLTKELLELDSVETGGQDSVRQARKEA---VCKIQAILE 93 (99)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCCSCT----TSHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHH---HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCc----hHHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHHH---HHHHHHHHH
Confidence 334468899999999999999999874 5664 7899999999999887 44455543 333344556
Q ss_pred HHHH
Q 007184 598 ALEN 601 (614)
Q Consensus 598 yie~ 601 (614)
+||.
T Consensus 94 ~LD~ 97 (99)
T 1m7k_A 94 KLEK 97 (99)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 31
>1pl5_A Regulatory protein SIR4; parallel coiled coil homodimer, DNA binding protein/transcription complex; 2.50A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=33.30 E-value=33 Score=29.49 Aligned_cols=41 Identities=29% Similarity=0.366 Sum_probs=32.3
Q ss_pred HhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 007184 569 QRIKSVESDLEKTKKVLHATVVKQHEIAEALENLRQSKFHQ 609 (614)
Q Consensus 569 ~Ri~~lE~eL~~TKKaL~~tl~kQ~El~~yie~~k~~k~~~ 609 (614)
-||-+|.-||--|||.|+.|-..--|--|-|.++-++.|+.
T Consensus 95 iritslqgdltftkkclenarsqisekdakinklmekdfqv 135 (142)
T 1pl5_A 95 IRITSLQGDLTFTKKCLENARSQISEKDAKINKLMEKDFQV 135 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----
T ss_pred eeeeeeccchhhHHHHHHHHHhhhhhhhHHHHHHHHHhhhc
Confidence 48999999999999999999888888888888887777765
No 32
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=32.65 E-value=1.3e+02 Score=30.59 Aligned_cols=65 Identities=8% Similarity=0.065 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhcCCCCCCchh-----HHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh
Q 007184 539 LQKLEKAYEELRHKPAAIPLE-----KEQMLVESLQRIKSVESDLEKTKKVLHATVVK-QHEIAEALENLR 603 (614)
Q Consensus 539 l~eLE~k~~~L~~KP~~mP~E-----KEe~L~aa~~Ri~~lE~eL~~TKKaL~~tl~k-Q~El~~yie~~k 603 (614)
.+++.+.+..+.-..-.+|.. =.++|..--.|+..|+.+|..+++.|.+-+.+ ...|.++.+...
T Consensus 198 ~~~v~~il~s~~f~~~~~p~~~~~~~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~ 268 (357)
T 3rrk_A 198 LEAARSSLSRLGLAELRFPGAYGAMPLGKAAARMKERARLAPEELVGIREEVARLSRESGEALIALWTRAK 268 (357)
T ss_dssp HHHHHHHHHTTTCCBCCCCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCeeccCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677788888888889853 35788888899999999999999999998888 666776666554
No 33
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=32.15 E-value=1e+02 Score=27.08 Aligned_cols=73 Identities=25% Similarity=0.326 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCCch--------------hHHHHHHHHHHhHHhhH----------------HHHHHHH
Q 007184 533 VPCIERLQKLEKAYEELRHKPAAIPL--------------EKEQMLVESLQRIKSVE----------------SDLEKTK 582 (614)
Q Consensus 533 ~~~~kRl~eLE~k~~~L~~KP~~mP~--------------EKEe~L~aa~~Ri~~lE----------------~eL~~TK 582 (614)
.+++-||..||..+..|..+-.++-. +.++|.+.--.|+.-|+ .++.+.+
T Consensus 5 ~~i~~~l~~Leae~q~L~~~E~qry~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~~~~~~~yk~~y~~l~k~Y~~~~ 84 (119)
T 3etw_A 5 ASLVGELQALDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDAL 84 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Confidence 45666777777777776665444432 22344444445555554 3678889
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 007184 583 KVLHATVVKQHEIAEALENLRQS 605 (614)
Q Consensus 583 KaL~~tl~kQ~El~~yie~~k~~ 605 (614)
|.|+.-+.+|++++.+.|..+.-
T Consensus 85 keLd~~ik~qekiIdnFE~ik~l 107 (119)
T 3etw_A 85 KKLEAEMEQQKAVISDFEKIQAL 107 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987753
No 34
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.70 E-value=1.2e+02 Score=23.71 Aligned_cols=41 Identities=15% Similarity=0.217 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHH
Q 007184 72 DEREESAVLELRQKLLERDLLPPRQDDYHTLLRFLKAREFNIERTIQMW 120 (614)
Q Consensus 72 e~~e~~~l~~LR~~L~~~~~Lp~~~dD~~~LLRFLrArkfdvekA~~~l 120 (614)
...+.+.|.+|...-- ..|...-..||...+||++.|...+
T Consensus 15 s~~~~e~i~qF~~ITg--------~~d~~~A~~~Le~~~WnLe~Av~~f 55 (67)
T 2dam_A 15 TQEQTEKLLQFQDLTG--------IESMDQCRHTLEQHNWNIEAAVQDR 55 (67)
T ss_dssp CHHHHHHHHHHHHHHC--------CSCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred ChhHHHHHHHHHHHhC--------CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4556778999887662 1344678999999999999998765
No 35
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=31.24 E-value=2.7e+02 Score=25.26 Aligned_cols=69 Identities=17% Similarity=0.287 Sum_probs=52.6
Q ss_pred cchhhhhHHHHHH--------HHHHHHHHHhcCCCCCCchhHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007184 527 NEEDLVVPCIERL--------QKLEKAYEELRHKPAAIPLEKEQMLVESLQRIKSVESDLEKTKKVLHATVVKQHEIAEA 598 (614)
Q Consensus 527 ~~~~~~~~~~kRl--------~eLE~k~~~L~~KP~~mP~EKEe~L~aa~~Ri~~lE~eL~~TKKaL~~tl~kQ~El~~y 598 (614)
.+.+.|..-+++| +..|.-++.| |..=-.|.|+ +.||+.||.|+...-+-|.+++.+=+++++-
T Consensus 50 ~~~~~f~~~~~ela~dli~kakqIe~LIdsL---Pg~~~seeeQ-----~~ri~~Le~E~~~~~~el~~~v~eae~ll~~ 121 (151)
T 1yke_B 50 VPPEEFSNTIDELSTDIILKTRQINKLIDSL---PGVDVSAEEQ-----LRKIDMLQKKLVEVEDEKIEAIKKKEKLLRH 121 (151)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---TTSSSCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777 6677777666 3332355554 5899999999999999999999999999998
Q ss_pred HHHHh
Q 007184 599 LENLR 603 (614)
Q Consensus 599 ie~~k 603 (614)
|+..-
T Consensus 122 v~~~l 126 (151)
T 1yke_B 122 VDSLI 126 (151)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
No 36
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=29.81 E-value=79 Score=26.05 Aligned_cols=40 Identities=18% Similarity=0.246 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 007184 76 ESAVLELRQKLLERDLLPPRQDDYHTLLRFLKAREFNIERTIQMWEE 122 (614)
Q Consensus 76 ~~~l~~LR~~L~~~~~Lp~~~dD~~~LLRFLrArkfdvekA~~~l~~ 122 (614)
..+|+++|..|- +...| ..|.+-....+||+++|...+-+
T Consensus 35 ~SCLd~iR~VlG------dsV~e-~~Lv~ailk~dfD~ekALd~vL~ 74 (83)
T 1ufz_A 35 YSCLDHMREVLG------DAVPD-DILTEAILKHKFDVQKALSVVLE 74 (83)
T ss_dssp HHHHHHHHHHTT------TTSCH-HHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHc------ccCCH-HHHHHHHHHhcCCHHHHHHHHHh
Confidence 578999999883 22345 58889999999999999988754
No 37
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=29.30 E-value=92 Score=24.92 Aligned_cols=43 Identities=19% Similarity=0.252 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 007184 72 DEREESAVLELRQKLLERDLLPPRQDDYHTLLRFLKAREFNIERTIQMWEE 122 (614)
Q Consensus 72 e~~e~~~l~~LR~~L~~~~~Lp~~~dD~~~LLRFLrArkfdvekA~~~l~~ 122 (614)
..+-...|.++++.+ |+ ..+ .|+.+.|..+++|+|.+...|-+
T Consensus 10 ~~~l~s~I~qV~DLf------Pd-LG~-gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 10 GVELDSLISQVKDLL------PD-LGE-GFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp SHHHHHHHHHHHHHC------CS-SCH-HHHHHHHHHTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc------cc-CCH-HHHHHHHHHhCCCHHHHHHHHHc
Confidence 444467788888776 43 355 59999999999999999988754
No 38
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=29.06 E-value=37 Score=24.33 Aligned_cols=16 Identities=19% Similarity=0.243 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHhc
Q 007184 535 CIERLQKLEKAYEELR 550 (614)
Q Consensus 535 ~~kRl~eLE~k~~~L~ 550 (614)
+=.|.+|||+++..|+
T Consensus 15 le~~naeLEervstLq 30 (42)
T 2oqq_A 15 LENKNSELEERLSTLQ 30 (42)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3345555555555554
No 39
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=26.36 E-value=84 Score=26.67 Aligned_cols=45 Identities=20% Similarity=0.392 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCchh----HHHHHHHHHHhHHhhHHHHHH
Q 007184 536 IERLQKLEKAYEELRHKPAAIPLE----KEQMLVESLQRIKSVESDLEK 580 (614)
Q Consensus 536 ~kRl~eLE~k~~~L~~KP~~mP~E----KEe~L~aa~~Ri~~lE~eL~~ 580 (614)
..||..|-+-++.|...-|.+|++ |=|.|..|++-|..|..-|..
T Consensus 34 r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 34 MSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 469999999999999998889988 789999999999999887754
No 40
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=25.52 E-value=1.1e+02 Score=21.56 Aligned_cols=37 Identities=11% Similarity=0.199 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHH
Q 007184 75 EESAVLELRQKLLERDLLPPRQDDYHTLLRFLKAREFNIERTIQMW 120 (614)
Q Consensus 75 e~~~l~~LR~~L~~~~~Lp~~~dD~~~LLRFLrArkfdvekA~~~l 120 (614)
+.+.|.+|...- . .+......||.+.+||++.|...+
T Consensus 5 ~~~~i~~F~~iT-------g--~~~~~A~~~L~~~~wdle~Ai~~f 41 (46)
T 1v92_A 5 RQDALREFVAVT-------G--AEEDRARFFLESAGWDLQIALASF 41 (46)
T ss_dssp HHHHHHHHHHHT-------C--CCHHHHHHHHHHTTSCSHHHHHHH
T ss_pred HHHHHHHHHHHh-------C--cCHHHHHHHHHHcCCCHHHHHHHH
Confidence 445677777543 1 133588999999999999998664
No 41
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=24.91 E-value=4.1e+02 Score=24.43 Aligned_cols=67 Identities=10% Similarity=0.122 Sum_probs=49.9
Q ss_pred cchhhhhHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007184 527 NEEDLVVPCIERLQKLEKAYEELRHKPAAIPLEKEQMLVESLQRIKSVESDLEKTKKVLHATVVKQHEIAEALENLRQSK 606 (614)
Q Consensus 527 ~~~~~~~~~~kRl~eLE~k~~~L~~KP~~mP~EKEe~L~aa~~Ri~~lE~eL~~TKKaL~~tl~kQ~El~~yie~~k~~k 606 (614)
.+.+++...+++|++|...+..+ |..+|+.+.||+.=.+.. .+..+...---|..|.+|.+..+..-
T Consensus 13 ~~~~~~~~alr~ia~l~r~~~~i-----------~~~~n~eI~~ik~~~~~~--~~~l~~~i~~l~~~l~~y~e~~r~el 79 (171)
T 2p2u_A 13 ADIRQAEGALAEIATIDRKVGEI-----------EAQMNEAIDAAKARASQK--SAPLLARRKELEDGVATFATLNKTEM 79 (171)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhHHHh
Confidence 67778999999999999999877 456788888888654443 33445555566778889998886543
No 42
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=24.41 E-value=86 Score=24.03 Aligned_cols=43 Identities=21% Similarity=0.207 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCch----hHHHHHHHHHHhHHhhHHHHH
Q 007184 537 ERLQKLEKAYEELRHKPAAIPL----EKEQMLVESLQRIKSVESDLE 579 (614)
Q Consensus 537 kRl~eLE~k~~~L~~KP~~mP~----EKEe~L~aa~~Ri~~lE~eL~ 579 (614)
+|+..|-+-+..|..--|.+|. -|=+.|..|+.=|..|+.-|+
T Consensus 12 ~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 12 NRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999998887875 478999999999999987664
No 43
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.91 E-value=1.7e+02 Score=22.40 Aligned_cols=40 Identities=13% Similarity=0.096 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHH
Q 007184 72 DEREESAVLELRQKLLERDLLPPRQDDYHTLLRFLKAREFNIERTIQMW 120 (614)
Q Consensus 72 e~~e~~~l~~LR~~L~~~~~Lp~~~dD~~~LLRFLrArkfdvekA~~~l 120 (614)
...+.+.|.+|...-. .+......||.+.+||++.|...+
T Consensus 12 s~~~~e~i~qF~~iTg---------~~~~~A~~~Le~~~WnLe~Av~~f 51 (62)
T 2dal_A 12 SSALKGLIQQFTTITG---------ASESVGKHMLEACNNNLEMAVTMF 51 (62)
T ss_dssp CHHHHHHHHHHHHHTC---------CCHHHHHHHHHTTTSCHHHHHHHH
T ss_pred CccHHHHHHHHHHHhC---------CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3455667888886541 123578999999999999998665
No 44
>3hf0_A GCN4-PLI SIDE chain sequence on AN (alpha-alpha- beta-alpha-beta-alpha-beta) backbone...; helix bundle, foldamer, alpha/beta-peptide, coiled coil; HET: BIL XCP B3Y XPC 16A; 2.10A {Synthetic}
Probab=23.40 E-value=1.4e+02 Score=19.61 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhHHhhHHHHHHHHHHHHH
Q 007184 560 KEQMLVESLQRIKSVESDLEKTKKVLHA 587 (614)
Q Consensus 560 KEe~L~aa~~Ri~~lE~eL~~TKKaL~~ 587 (614)
.|.-|.+.+....-.|.||...|..|.+
T Consensus 6 ~e~kl~e~l~kl~h~e~el~r~k~ll~e 33 (34)
T 3hf0_A 6 XEXKLXEXLXKLXHXEXELXRXKXLLXE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 4566788888999999999999988865
No 45
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=23.12 E-value=1.5e+02 Score=25.04 Aligned_cols=57 Identities=12% Similarity=0.163 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHH
Q 007184 534 PCIERLQKLEKAYEELRHKPAAIPLEKEQMLVESLQRIKSVESDLEKTKKVLHATVVKQHE 594 (614)
Q Consensus 534 ~~~kRl~eLE~k~~~L~~KP~~mP~EKEe~L~aa~~Ri~~lE~eL~~TKKaL~~tl~kQ~E 594 (614)
..+.|...+|.++..+..+- ..+|+=+.+=-.|+..||.||+.+...|.++..+-++
T Consensus 20 ~a~drae~~e~~~k~~e~~~----~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee 76 (101)
T 3u1c_A 20 NALDRAEQAEADKKAAEERS----KQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLF 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666554442 2356666666688999999999998888888666444
No 46
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=22.43 E-value=1e+02 Score=24.69 Aligned_cols=48 Identities=13% Similarity=0.283 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCCc---hhHHHHHHHHHHhHHhhHHHHHHHHH
Q 007184 536 IERLQKLEKAYEELRHKPAAIP---LEKEQMLVESLQRIKSVESDLEKTKK 583 (614)
Q Consensus 536 ~kRl~eLE~k~~~L~~KP~~mP---~EKEe~L~aa~~Ri~~lE~eL~~TKK 583 (614)
=+|...|=+.|..|..--|.+| ..|=.+|..|++=|+.|+.++..-+.
T Consensus 21 r~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~ 71 (80)
T 1hlo_A 21 RKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777777777766544443 47999999999999999987765443
No 47
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=22.24 E-value=3e+02 Score=21.96 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhHHhhHHHHHHHH
Q 007184 533 VPCIERLQKLEKAYEELRHKPAAIPLEKEQMLVESLQRIKSVESDLEKTK 582 (614)
Q Consensus 533 ~~~~kRl~eLE~k~~~L~~KP~~mP~EKEe~L~aa~~Ri~~lE~eL~~TK 582 (614)
..+.+||+++|.+=..|. .||..||.+|+.++
T Consensus 3 ~~~~~kLq~~E~~N~~Le------------------~~v~~le~~Le~s~ 34 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLE------------------GQLSEMEQRLEKSQ 34 (72)
T ss_dssp CHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHH------------------HHHHHHHHHHHHHH
Confidence 356788888888777654 46778888887776
No 48
>2z5i_I TM, tropomyosin alpha-1 chain and general control protein GCN4; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Oryctolagus cuniculus} PDB: 2z5h_I 2g9j_A 1tmz_A
Probab=22.23 E-value=61 Score=23.06 Aligned_cols=19 Identities=26% Similarity=0.573 Sum_probs=17.1
Q ss_pred HHHHhHHhhHHHHHHHHHH
Q 007184 566 ESLQRIKSVESDLEKTKKV 584 (614)
Q Consensus 566 aa~~Ri~~lE~eL~~TKKa 584 (614)
+|++|.+.+|+++-.++|.
T Consensus 21 ~A~drAe~~E~~~k~~~~~ 39 (40)
T 2z5i_I 21 NALDRAEQLENEVARLKKL 39 (40)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHhhcc
Confidence 7899999999999998874
No 49
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=21.98 E-value=1.2e+02 Score=25.76 Aligned_cols=46 Identities=22% Similarity=0.380 Sum_probs=36.1
Q ss_pred HHHHHHHhcCCCCCC--chhHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Q 007184 542 LEKAYEELRHKPAAI--PLEKEQMLVESLQRIKSVESDLEKTKKVLHAT 588 (614)
Q Consensus 542 LE~k~~~L~~KP~~m--P~EKEe~L~aa~~Ri~~lE~eL~~TKKaL~~t 588 (614)
|+++..+....|. | |.--|.-|+++-.+|+.|+.+|-+=...|.++
T Consensus 41 l~Km~~vY~~nP~-~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~ 88 (98)
T 2ke4_A 41 LKKMKDVYEKTPQ-MGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEA 88 (98)
T ss_dssp HHHHHHHHHHCGG-GCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666665 6 77779999999999999999999888888776
No 50
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=21.52 E-value=97 Score=21.70 Aligned_cols=37 Identities=27% Similarity=0.346 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhHHhhHHHHHHHH
Q 007184 535 CIERLQKLEKAYEELRHKPAAIPLEKEQMLVESLQRIKSVESDLEKTK 582 (614)
Q Consensus 535 ~~kRl~eLE~k~~~L~~KP~~mP~EKEe~L~aa~~Ri~~lE~eL~~TK 582 (614)
+-.-+||||+.-.+|.+ =||.+--|- -.||+||.+-|
T Consensus 8 lknyiqeleernaelkn-------lkehlkfak----aelefelaahk 44 (46)
T 3he4_B 8 LKNYIQELEERNAELKN-------LKEHLKFAK----AELEFELAAHK 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHH----HHHHHHHHHTT
T ss_pred HHHHHHHHHHHhHHHHh-------HHHHHHHHH----HHHHHHHHhhc
Confidence 33457888888777654 244433221 24788887654
No 51
>2kvs_A Uncharacterized protein MW0776; PSI-2, NESG, BIG target, structural genomics, protein structure initiative; NMR {Staphylococcus aureus}
Probab=21.22 E-value=2.4e+02 Score=23.05 Aligned_cols=47 Identities=9% Similarity=0.113 Sum_probs=36.8
Q ss_pred HHHHHHHHHHcCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 007184 78 AVLELRQKLLERDLLPPRQDDYHTLLRFLKAREFNIERTIQMWEEMLI 125 (614)
Q Consensus 78 ~l~~LR~~L~~~~~Lp~~~dD~~~LLRFLrArkfdvekA~~~l~~~l~ 125 (614)
-+.+|-+|+..+...|...+|+..|.+||....++-+. .+.+++.+.
T Consensus 21 p~g~LA~~i~~D~~FPK~~~d~~eIs~Yle~~~~~~~~-~e~vkrals 67 (80)
T 2kvs_A 21 PFGILAEHVSEDKAFPRLEERHQVIRAYVMSNYTDHQL-IETTNRAIS 67 (80)
T ss_dssp HHHHHHHHHHTSCCCCSSCSSSHHHHHHHHHHCCCHHH-HHHHHHHHH
T ss_pred hHHHHHHHHhhCcCCCCCCCCHHHHHHHHHHcCCCHHH-HHHHHHHHH
Confidence 46778889988888999889999999999998887655 555544443
Done!