BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007185
(614 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5BL31|CF106_DANRE Uncharacterized protein C6orf106 homolog OS=Danio rerio
GN=zgc:101577 PE=2 SV=1
Length = 283
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 71/139 (51%), Gaps = 12/139 (8%)
Query: 481 FILDVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPAD 540
F+ DV + +G + P TPFTK WR++NTG +WP G L ++GGD+F V++ + D
Sbjct: 77 FVEDVTIGEGESVPPDTPFTKTWRIQNTGTESWPPGVCLKYVGGDQFGH-VNMVMVRSLD 135
Query: 541 GVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWV--------LIQVLRALE 592
+ D++V +P +PG Y WRM + +G+ +G +WV L+ V + L
Sbjct: 136 PQEIS---DVSVQMRSPAVPGMYQGQWRMCTATGLFYGDVIWVILSVEEGGLLGVTQQLS 192
Query: 593 SIAISFEAYAFDNLVASYK 611
S F +L Y
Sbjct: 193 SFKTEFNTQPHRSLEGDYN 211
>sp|Q5RC94|NBR1_PONAB Next to BRCA1 gene 1 protein OS=Pongo abelii GN=NBR1 PE=2 SV=1
Length = 894
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 99/228 (43%), Gaps = 44/228 (19%)
Query: 375 MFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAA-MGSEADYI--RIDRPV----- 426
F + C+ C I G R++ + Y++C C A G + +++ ++ RPV
Sbjct: 210 QFSWHIACNNCQRR-IVGVRYQCSLCPSYNICEDCEAGPYGHDTNHVLLKLRRPVVGSSE 268
Query: 427 -----HYRHPRPFRGLYDHRQNFWLGTPGPDTQHVGALGAPHILRDRGIKPGRSRLDSCF 481
Y PR L R TP T L + F
Sbjct: 269 PFCHSKYSTPRLPAALEQVRLPLQPCTPVMPT-----------------------LSAAF 305
Query: 482 ILDVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGD-KFSDGVSVEIEVPAD 540
+ D N+ DGT + P T F K WRM+NTGN+ W ++L ++ G+ + ++ VP
Sbjct: 306 V-DENLPDGTHLQPGTKFIKHWRMKNTGNVKWSADTKLKFMWGNLTLASTEKKDVLVPCL 364
Query: 541 GVPVEGEID-IAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQV 587
G + ++V+F AP L G Y S+WR+S G +FG RVW I V
Sbjct: 365 KA---GHVGVVSVEFIAPALEGTYTSHWRLSH-KGQQFGPRVWCSIIV 408
>sp|Q5F3N9|CF106_CHICK Uncharacterized protein C6orf106 homolog OS=Gallus gallus
GN=RCJMB04_11e11 PE=2 SV=1
Length = 291
Score = 75.9 bits (185), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 59/107 (55%), Gaps = 4/107 (3%)
Query: 481 FILDVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPAD 540
F+ DV + +G + P T FTK WR++NTG WP G L ++GGD+F V + +
Sbjct: 77 FVEDVTIGEGESIPPDTQFTKTWRIQNTGTEVWPPGVCLKYVGGDQFG---HVNMVMVRS 133
Query: 541 GVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQV 587
P E D++V +P G Y WRM + +G+ +G +WV++ V
Sbjct: 134 LEPQE-IADVSVQMCSPSTAGMYQGQWRMCTATGLYYGDVIWVILSV 179
>sp|Q14596|NBR1_HUMAN Next to BRCA1 gene 1 protein OS=Homo sapiens GN=NBR1 PE=1 SV=3
Length = 966
Score = 75.9 bits (185), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 64/113 (56%), Gaps = 7/113 (6%)
Query: 477 LDSCFILDVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGD-KFSDGVSVEI 535
L + F+ D N+ DGT + P T F K WRM+NTGN+ W ++L ++ G+ + ++
Sbjct: 371 LSAAFV-DENLPDGTHLQPGTKFIKHWRMKNTGNVKWSADTKLKFMWGNLTLASTEKKDV 429
Query: 536 EVPADGVPVEGEID-IAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQV 587
VP G + ++V+F AP L G Y S+WR+S G +FG RVW I V
Sbjct: 430 LVPCLKA---GHVGVVSVEFIAPALEGTYTSHWRLSH-KGQQFGPRVWCSIIV 478
>sp|P97432|NBR1_MOUSE Next to BRCA1 gene 1 protein OS=Mus musculus GN=Nbr1 PE=1 SV=1
Length = 988
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 64/113 (56%), Gaps = 7/113 (6%)
Query: 477 LDSCFILDVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGD-KFSDGVSVEI 535
L + F+ D N+ DGT + P T F K WRM+NTGN+ W ++L ++ G+ + ++
Sbjct: 372 LSAAFV-DENLPDGTHLQPGTKFIKHWRMKNTGNVKWNTDTKLKFMWGNLTLASTEKKDV 430
Query: 536 EVPADGVPVEGEID-IAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQV 587
VP G + ++V+F AP L G Y S+WR+S G +FG RVW I V
Sbjct: 431 LVPCLKA---GHVGVVSVEFIAPTLEGTYTSHWRLSH-KGQQFGPRVWCSIIV 479
>sp|Q501R9|NBR1_RAT Next to BRCA1 gene 1 protein OS=Rattus norvegicus GN=Nbr1 PE=1 SV=1
Length = 983
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 63/113 (55%), Gaps = 7/113 (6%)
Query: 477 LDSCFILDVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGD-KFSDGVSVEI 535
L + F+ D N+ DGT + P T F K WRM+NTGN+ W ++L ++ G+ + ++
Sbjct: 373 LSAAFV-DENLPDGTHLQPGTKFIKHWRMKNTGNVKWSADTKLKFMWGNLTLASTEKKDV 431
Query: 536 EVPADGVPVEGEID-IAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQV 587
VP G I ++V+F AP L G Y +WR+S G +FG RVW I V
Sbjct: 432 LVPCLKA---GHIGVVSVEFIAPTLEGTYTLHWRLSH-KGQQFGPRVWCSIIV 480
>sp|Q9H6K1|CF106_HUMAN Uncharacterized protein C6orf106 OS=Homo sapiens GN=C6orf106 PE=1
SV=2
Length = 298
Score = 73.6 bits (179), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 58/107 (54%), Gaps = 4/107 (3%)
Query: 481 FILDVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPAD 540
F+ DV + +G + P T F K WR++N+G AWP G L ++GGD+F V +
Sbjct: 77 FVEDVTIGEGESIPPDTQFVKTWRIQNSGAEAWPPGVCLKYVGGDQFGHVNMVMVR---- 132
Query: 541 GVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQV 587
+ + D++V +P G Y WRM + +G+ +G +WV++ V
Sbjct: 133 SLEPQEIADVSVQMCSPSRAGMYQGQWRMCTATGLYYGDVIWVILSV 179
>sp|Q3TT38|CF106_MOUSE Uncharacterized protein C6orf106 homolog OS=Mus musculus
GN=D17Wsu92e PE=2 SV=2
Length = 291
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 58/107 (54%), Gaps = 4/107 (3%)
Query: 481 FILDVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPAD 540
F+ DV + +G + P T F K WR++N+G AWP G L ++GGD+F V +
Sbjct: 77 FVEDVTIGEGESIPPDTQFIKTWRIQNSGAEAWPPGVCLKYVGGDQFGHVNMVMVR---- 132
Query: 541 GVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQV 587
+ + D++V +P G Y WRM + +G+ +G +WV++ V
Sbjct: 133 SLEPQEIADVSVQMCSPSRAGMYQGQWRMCTATGLYYGDVIWVILSV 179
>sp|Q9P792|YN8B_SCHPO ZZ-type zinc finger-containing protein P35G2.11c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBP35G2.11c PE=4 SV=1
Length = 397
Score = 72.8 bits (177), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 88/230 (38%), Gaps = 50/230 (21%)
Query: 377 HKGVRCDGCGVHPITGPRFKSKVKDDYDLCSIC-FAAMGSEADYIRIDR-----PVHYRH 430
H+ V+CD C HPI GPRF V +DYDLCS C +R+ R P+H
Sbjct: 207 HRSVQCDNCLAHPIVGPRFHCLVCEDYDLCSSCVSHVHHDHHSMLRLTREISASPLHLSK 266
Query: 431 PRPFRGLYDHRQNFWLGTPGPDTQHVGALGAPHILRDRGIKPGRSRLDSCFILDVNVLDG 490
P KP D F L + +
Sbjct: 267 PE--------------------------------------KPKVLNFD--FKLVEDSILP 286
Query: 491 TMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGE-ID 549
++P PF KIW +RNT +WP + + GGDK G + P GE ++
Sbjct: 287 LELSPGCPFYKIWHIRNTSCQSWPSPLYVKFNGGDKLFPGDN-PYSFPITSSVHPGEDVN 345
Query: 550 IAVDFTAPELPGR--YISYWRMSSPSGVKFGQRVWVLIQVLRALESIAIS 597
V PE + + +++ + S G F + + ++V ++ I+ S
Sbjct: 346 FTVALKVPEKSNKEIFTAFFNICSDDGSVFHKSLCAFLRVPKSFSRISKS 395
>sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2
Length = 4834
Score = 56.2 bits (134), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 358 PRRGHFKRGFNRDALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAM--GS 415
P++ H+ + L+ H GV CDGC + PI G RFK + DD+D C CF +
Sbjct: 2684 PQQSHWTGLLSEMELVPSIHPGVTCDGCQMFPINGSRFKCRNCDDFDFCETCFKTKKHNT 2743
Query: 416 EADYIRIDRP 425
+ RI+ P
Sbjct: 2744 RHTFGRINEP 2753
>sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3
Length = 4836
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 358 PRRGHFKRGFNRDALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAM--GS 415
P++ H+ + L+ H GV CDGC PI G RFK + DD+D C CF +
Sbjct: 2685 PQQSHWTGLLSEMELVPSIHPGVTCDGCQTFPINGSRFKCRNCDDFDFCETCFKTKKHNT 2744
Query: 416 EADYIRIDRP 425
+ RI+ P
Sbjct: 2745 RHTFGRINEP 2754
>sp|P34664|YOY6_CAEEL Uncharacterized protein ZK652.6 OS=Caenorhabditis elegans
GN=ZK652.6 PE=4 SV=2
Length = 575
Score = 46.2 bits (108), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 377 HKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRPVH-YRHP 431
H+GV CDGC G R+K DYDLC CF D P+H HP
Sbjct: 9 HEGVSCDGCAFTAFAGNRYKCLRCSDYDLCFSCFTTKNYGDQQTIADIPIHDESHP 64
>sp|Q5ZIJ9|MIB2_CHICK E3 ubiquitin-protein ligase MIB2 OS=Gallus gallus GN=MIB2 PE=2 SV=1
Length = 954
Score = 45.8 bits (107), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 12/93 (12%)
Query: 360 RGHFKRGFN--------RDALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFA 411
R +++ GF +A +G+ H + CD C H I G R+K K+ DYDLC+ C+
Sbjct: 61 RTNYRTGFQGAYDLLLYDNAQIGVRHPNIICDCCKKHGIRGMRWKCKMCFDYDLCTQCY- 119
Query: 412 AMGSEADYIRIDRPVHYRHPRPFRGLYDHRQNF 444
M ++ D H +P L RQN
Sbjct: 120 -MNNKHDLSHAFERYETAHSQPV--LVSPRQNL 149
>sp|Q64337|SQSTM_MOUSE Sequestosome-1 OS=Mus musculus GN=Sqstm1 PE=1 SV=1
Length = 442
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 369 RDALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSIC 409
++A M H V CDGC P+ G R+K V DYDLCS+C
Sbjct: 115 QEAPRNMVHPNVICDGCN-GPVVGTRYKCSVCPDYDLCSVC 154
>sp|P14199|REF2P_DROME Protein ref(2)P OS=Drosophila melanogaster GN=ref(2)P PE=1 SV=2
Length = 599
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 376 FHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSIC 409
H V CDGCG+ P+ G R+K +YDLC C
Sbjct: 121 IHDAVECDGCGLAPLIGFRYKCVQCSNYDLCQKC 154
>sp|Q13501|SQSTM_HUMAN Sequestosome-1 OS=Homo sapiens GN=SQSTM1 PE=1 SV=1
Length = 440
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 369 RDALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRPVHY 428
++A M H V CDGC P+ G R+K V DYDLCS+C G + ++ P +
Sbjct: 115 QEAPRNMVHPNVICDGCN-GPVVGTRYKCSVCPDYDLCSVC-EGKGLHRGHTKLAFPSPF 172
Query: 429 RH 430
H
Sbjct: 173 GH 174
>sp|Q5RBA5|SQSTM_PONAB Sequestosome-1 OS=Pongo abelii GN=SQSTM1 PE=2 SV=1
Length = 440
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 369 RDALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRPVHY 428
++A M H V CDGC P+ G R+K V DYDLCS+C G + ++ P +
Sbjct: 115 QEAPRNMVHPNVICDGCN-GPVVGTRYKCSVCPDYDLCSVC-EGKGLHRGHTKLAFPSPF 172
Query: 429 RH 430
H
Sbjct: 173 GH 174
>sp|Q24629|REF2P_DROSI Protein ref(2)P OS=Drosophila simulans GN=ref(2)P PE=4 SV=1
Length = 599
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 376 FHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAA 412
H V+CDGCG+ P+ G R+K ++DLC C +A
Sbjct: 121 IHDSVQCDGCGLAPLIGFRYKCVQCSNFDLCQKCESA 157
>sp|Q8R516|MIB2_MOUSE E3 ubiquitin-protein ligase MIB2 OS=Mus musculus GN=Mib2 PE=1 SV=2
Length = 973
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 370 DALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRPVHYR 429
+A +G+ H + CD C H + G R+K +V DYDLC+ C+ M ++ D
Sbjct: 79 NAQIGIRHPNIICDCCKKHGLRGMRWKCRVCFDYDLCTQCY--MHNKHDLTHAFERYETS 136
Query: 430 HPRP 433
H RP
Sbjct: 137 HSRP 140
>sp|Q68LP1|MIB2_RAT E3 ubiquitin-protein ligase MIB2 OS=Rattus norvegicus GN=Mib2 PE=2
SV=2
Length = 971
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 370 DALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRPVHYR 429
+A +G+ H + CD C H + G R+K +V DYDLC+ C+ M ++ D
Sbjct: 79 NAQIGIRHPNIICDCCKKHGLRGMRWKCRVCFDYDLCTQCY--MHNKHDLTHAFERYETS 136
Query: 430 HPRP 433
H RP
Sbjct: 137 HSRP 140
>sp|O08623|SQSTM_RAT Sequestosome-1 OS=Rattus norvegicus GN=Sqstm1 PE=1 SV=1
Length = 439
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 375 MFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSIC 409
M H V CDGC P+ G R+K V DYDLCS+C
Sbjct: 118 MVHPNVICDGCN-GPVVGTRYKCSVCPDYDLCSVC 151
>sp|Q9VUX2|MIB_DROME E3 ubiquitin-protein ligase mind-bomb OS=Drosophila melanogaster
GN=mib1 PE=1 SV=3
Length = 1226
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 374 GMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICF 410
G+ H+G CD C PI G R+K +YDLCSIC+
Sbjct: 171 GVKHEGTMCDTCRQQPIFGIRWKCAECINYDLCSICY 207
>sp|Q96AX9|MIB2_HUMAN E3 ubiquitin-protein ligase MIB2 OS=Homo sapiens GN=MIB2 PE=1 SV=3
Length = 1013
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 370 DALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICF 410
+A +G+ H + CD C H + G R+K +V DYDLC+ C+
Sbjct: 137 NAQIGVRHPNIICDCCKKHGLRGMRWKCRVCLDYDLCTQCY 177
>sp|Q80SY4|MIB1_MOUSE E3 ubiquitin-protein ligase MIB1 OS=Mus musculus GN=Mib1 PE=1 SV=1
Length = 1006
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 374 GMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICF 410
G+ H G CD C PI G R+K +YDLC++C+
Sbjct: 77 GIKHDGTMCDTCRQQPIIGIRWKCAECTNYDLCTVCY 113
>sp|Q86YT6|MIB1_HUMAN E3 ubiquitin-protein ligase MIB1 OS=Homo sapiens GN=MIB1 PE=1 SV=1
Length = 1006
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 374 GMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICF 410
G+ H G CD C PI G R+K +YDLC++C+
Sbjct: 77 GIKHDGTMCDTCRQQPIIGIRWKCAECTNYDLCTVCY 113
>sp|Q6GNY1|MIB1_XENLA E3 ubiquitin-protein ligase mib1 OS=Xenopus laevis GN=mib1 PE=2
SV=1
Length = 1011
Score = 42.7 bits (99), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 374 GMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICF 410
G+ H G CD C PI G R+K +YDLC++C+
Sbjct: 77 GIKHDGTMCDTCRQQPIIGIRWKCAECTNYDLCTVCY 113
>sp|Q92734|TFG_HUMAN Protein TFG OS=Homo sapiens GN=TFG PE=1 SV=2
Length = 400
Score = 42.4 bits (98), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 68/138 (49%), Gaps = 23/138 (16%)
Query: 1 MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLF--NFPHDSDLTLTYVDE 58
+ ++IK + G+ +RR NE D+ D L ++ +F + ++T+ Y DE
Sbjct: 7 LSGKLIIKAQLGEDIRRIPIH---NE--DITYDELVLMMQRVFRGKLLSNDEVTIKYKDE 61
Query: 59 DGDIVTLVDDDDLCDVMRQRLKFLRIDVHLNNDKFGKAYARSSGSSTPLRSPRIQH---P 115
DGD++T+ D DL + Q + L++ + +N G PL S ++++
Sbjct: 62 DGDLITIFDSSDLSFAI-QCSRILKLTLFVN------------GQPRPLESSQVKYLRRE 108
Query: 116 LPDIDSKISEILKSVPEP 133
L ++ +K++ +L S+ P
Sbjct: 109 LIELRNKVNRLLDSLEPP 126
>sp|Q804S5|MIB1_DANRE E3 ubiquitin-protein ligase mib1 OS=Danio rerio GN=mib1 PE=1 SV=1
Length = 1030
Score = 41.6 bits (96), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 374 GMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICF 410
G+ H G CD C PI G R+K +YDLC+ C+
Sbjct: 77 GIKHDGTMCDTCRQQPIIGIRWKCAECTNYDLCTTCY 113
>sp|Q8LBL5|PRT1_ARATH E3 ubiquitin-protein ligase PRT1 OS=Arabidopsis thaliana GN=PRT1
PE=2 SV=2
Length = 410
Score = 39.7 bits (91), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 377 HKGVRCDGCGVHPITGPRFKSK-VKDD--YDLCSICF 410
H G CD CGV+PI G R++ K K++ YDLC C+
Sbjct: 306 HFGAGCDSCGVYPIIGDRYRCKDCKEEIGYDLCKDCY 342
>sp|Q6GPB6|KCMF1_XENLA E3 ubiquitin-protein ligase KCMF1 OS=Xenopus laevis GN=kcmf1 PE=2
SV=1
Length = 381
Score = 39.7 bits (91), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 377 HKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRPVH 427
H+GV CD C G R+K + DYDLC+ C+ + G+ D P+
Sbjct: 4 HEGVSCDACLKGNFRGRRYKCLICYDYDLCASCYES-GATTTRHTTDHPMQ 53
>sp|Q9P0J7|KCMF1_HUMAN E3 ubiquitin-protein ligase KCMF1 OS=Homo sapiens GN=KCMF1 PE=1
SV=2
Length = 381
Score = 39.3 bits (90), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 377 HKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRPVH 427
H+GV CD C G R+K + DYDLC+ C+ + G+ D P+
Sbjct: 4 HEGVSCDACLKGNFRGRRYKCLICYDYDLCASCYES-GATTTRHTTDHPMQ 53
>sp|Q1LZE1|KCMF1_BOVIN E3 ubiquitin-protein ligase KCMF1 OS=Bos taurus GN=KCMF1 PE=2 SV=1
Length = 381
Score = 39.3 bits (90), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 377 HKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRPVH 427
H+GV CD C G R+K + DYDLC+ C+ + G+ D P+
Sbjct: 4 HEGVSCDACLKGNFRGRRYKCLICYDYDLCASCYES-GATTTRHTTDHPMQ 53
>sp|Q7T321|KCMF1_DANRE E3 ubiquitin-protein ligase KCMF1 OS=Danio rerio GN=kcmf1 PE=2 SV=1
Length = 383
Score = 38.9 bits (89), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 377 HKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICF 410
H+GV CD C G R+K + DYDLC+ C+
Sbjct: 4 HEGVSCDACLKGNFRGRRYKCLICYDYDLCASCY 37
>sp|Q80UY2|KCMF1_MOUSE E3 ubiquitin-protein ligase KCMF1 OS=Mus musculus GN=Kcmf1 PE=2
SV=1
Length = 381
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 377 HKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICF 410
H+GV CD C G R+K + DYDLC+ C+
Sbjct: 4 HEGVSCDACLKGNFRGRRYKCLICYDYDLCASCY 37
>sp|Q4FMP8|SYD_PELUB Aspartate--tRNA ligase OS=Pelagibacter ubique (strain HTCC1062)
GN=aspS PE=3 SV=1
Length = 594
Score = 38.5 bits (88), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 260 LLSSVDLNLPPVDSAPSGSTMSI---APPASNITAGDDR---MDANENSVHQTTSVPMST 313
L S VD SG ++ APP I G DR + ANE ++ + T PM+
Sbjct: 506 LFSIAGYQKEQVDEKFSGMINALSYGAPPHGGIAPGIDRIVMLLANEKNIREVTMFPMNQ 565
Query: 314 SSVDPMW--PSDVNQPRTADLG 333
++ D M PS+VN+ + +LG
Sbjct: 566 NAQDLMMNAPSNVNEEQLKELG 587
>sp|Q9Y048|DTN1_CAEEL Dystrobrevin-1 OS=Caenorhabditis elegans GN=dyb-1 PE=1 SV=1
Length = 590
Score = 37.7 bits (86), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 367 FNRDALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICF 410
+R A + + V CD C V TG R+K + +Y LC CF
Sbjct: 249 LHRMASVSNVYHPVVCDACQVRSFTGFRYKCQRCANYQLCQSCF 292
>sp|Q54QG5|Y3893_DICDI Probable E3 ubiquitin-protein ligase DDB_G0283893 OS=Dictyostelium
discoideum GN=DDB_G0283893 PE=3 SV=2
Length = 5875
Score = 36.6 bits (83), Expect = 0.65, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 382 CDGCGVHPITGPRFKSKVKDDYDLCSICF 410
CD C ++PITG R+ D+DLC+ C+
Sbjct: 3231 CDLCNINPITGKRWNCSNCGDFDLCNQCY 3259
>sp|Q9BYG4|PAR6G_HUMAN Partitioning defective 6 homolog gamma OS=Homo sapiens GN=PARD6G
PE=1 SV=1
Length = 376
Score = 36.6 bits (83), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 3 STMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDI 62
S + +K K+G RRF+ + K + D L + N SD+T+ Y D GD+
Sbjct: 17 SAVEVKSKFGAEFRRFSLDRHKPGKFE-DFYKLVVHTHHISN----SDVTIGYADVHGDL 71
Query: 63 VTLVDDDDLCDVMRQRLKFLRI 84
+ + +DD+ C + LR+
Sbjct: 72 LPINNDDNFCKAVSSANPLLRV 93
>sp|Q9SRU2|BIG_ARATH Auxin transport protein BIG OS=Arabidopsis thaliana GN=BIG PE=1 SV=2
Length = 5098
Score = 35.8 bits (81), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 382 CDGCGVHPITGPRFKSKVKDDYDLCSICFAAM 413
CDGC PI R+ V D+DLC C+ +
Sbjct: 2618 CDGCSTVPILRRRWHCTVCPDFDLCEACYEVL 2649
>sp|Q9BYG5|PAR6B_HUMAN Partitioning defective 6 homolog beta OS=Homo sapiens GN=PARD6B
PE=1 SV=1
Length = 372
Score = 35.8 bits (81), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 11/144 (7%)
Query: 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIV 63
TM +K K+G RRF+ + K + + GL + + N D+ + Y D GD++
Sbjct: 16 TMEVKSKFGAEFRRFSLERSKPGKFE-EFYGLLQHVHKIPNV----DVLVGYADIHGDLL 70
Query: 64 TLVDDDDLCDVMRQRLKFLRIDVHLNNDKFGKAYARSSGSSTPLRSPRIQHPL--PDIDS 121
+ +DD+ + LRI + + A+ G+ T ++ + + PD
Sbjct: 71 PINNDDNYHKAVSTANPLLRIFIQKKEEADYSAF----GTDTLIKKKNVLTNVLRPDNHR 126
Query: 122 KISEILKSVPEPLREAISKLSTDV 145
K I+ S+P+ R S + D+
Sbjct: 127 KKPHIVISMPQDFRPVSSIIDVDI 150
>sp|B9G2A8|BIG_ORYSJ Auxin transport protein BIG OS=Oryza sativa subsp. japonica
GN=Os09g0247700 PE=2 SV=1
Length = 4965
Score = 35.8 bits (81), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 382 CDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRPVHYRHP 431
CDGC PI R+ + D+DLC C+ + ++ R+ P HP
Sbjct: 2474 CDGCSTVPILRRRWHCNICPDFDLCETCYEILDAD----RLPAPHSRDHP 2519
>sp|Q89AI8|KPYK_BUCBP Pyruvate kinase OS=Buchnera aphidicola subsp. Baizongia pistaciae
(strain Bp) GN=pykA PE=3 SV=1
Length = 479
Score = 35.4 bits (80), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 523 GGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVW 582
G +K G+S I D + IDI VD+ A P RY S + VKFG +
Sbjct: 161 GINKLGGGLSARILTKKDKRDIITSIDIGVDYLAVSFP-RYGSDLDHARKCAVKFGSKAK 219
Query: 583 VLIQVLRA 590
++ ++ RA
Sbjct: 220 IIAKIERA 227
>sp|Q9JK83|PAR6B_MOUSE Partitioning defective 6 homolog beta OS=Mus musculus GN=Pard6b
PE=1 SV=2
Length = 371
Score = 35.4 bits (80), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 11/144 (7%)
Query: 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIV 63
TM +K K+G RRF+ + K + + GL + + N D+ + Y D GD++
Sbjct: 16 TMEVKSKFGAEFRRFSLERSKPGKFE-EFYGLLQHVHKIPNV----DVLVGYADIHGDLL 70
Query: 64 TLVDDDDLCDVMRQRLKFLRIDVHLNNDKFGKAYARSSGSSTPLRSPRIQHPL--PDIDS 121
+ +DD+ + LRI + + A+ G+ T +R + + PD
Sbjct: 71 PINNDDNYHKAVSTANPLLRIFIQKKEEADYSAF----GTDTLIRKKNMLSNVLRPDNHR 126
Query: 122 KISEILKSVPEPLREAISKLSTDV 145
K I+ S+P+ R S + D+
Sbjct: 127 KKPHIVISMPQDFRPVSSIIDVDI 150
>sp|Q9NAN2|PAR6_CAEEL Partitioning defective protein 6 OS=Caenorhabditis elegans GN=par-6
PE=1 SV=2
Length = 309
Score = 34.7 bits (78), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 63/147 (42%), Gaps = 6/147 (4%)
Query: 3 STMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDI 62
ST+ +K K+ RRF+ + + + DG R+ ++ L + TL Y GD+
Sbjct: 13 STLQVKSKFDSEWRRFS--IPMHSASGVSYDGFRSLVEKLHHL-ESVQFTLCYNSTGGDL 69
Query: 63 VTLVDDDDLCDVMRQRLKFLRIDVHLNNDKFGKAYARSSGSSTPLRSPRIQHPLPDIDSK 122
+ + +DD+L LR+ + + + + Y G+ + R I + K
Sbjct: 70 LPITNDDNLRKSFESARPLLRLLIQRRGESWEEKYG--YGTDSDKRWKGISSLMAQKPPK 127
Query: 123 ISEILKSVPEPLREAISKLSTDVASKA 149
S + S PE R+ + + D+ +A
Sbjct: 128 RSYSI-SNPEDFRQVSAIIDVDIVPEA 153
>sp|O13965|MUG70_SCHPO Meiotically up-regulated gene 70 protein OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mug70 PE=1 SV=1
Length = 730
Score = 34.7 bits (78), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
Query: 51 LTLTYVDEDGDIVTLVDDDDLCD--VMRQRLKFLRIDV 86
+TLTY+D++GD+V LV D DL + ++ +R R++V
Sbjct: 613 VTLTYIDDEGDVVELVSDSDLREAILLARRRGLPRLEV 650
>sp|Q9JK84|PAR6G_MOUSE Partitioning defective 6 homolog gamma OS=Mus musculus GN=Pard6g
PE=2 SV=1
Length = 382
Score = 33.5 bits (75), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 3 STMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDI 62
S + +K K+G RRF+ + K + D L + N +++T+ Y D GD+
Sbjct: 17 SAVEVKSKFGAEFRRFSLDRHKPGKFE-DFYQLVVHTHHISN----TEVTIGYADVHGDL 71
Query: 63 VTLVDDDDLCDVMRQRLKFLRI 84
+ + +DD+ C + LR+
Sbjct: 72 LPINNDDNFCKAVSSANPLLRV 93
>sp|Q6YI48|PTPRU_CHICK Receptor-type tyrosine-protein phosphatase U OS=Gallus gallus
GN=PTPRU PE=2 SV=1
Length = 1434
Score = 32.7 bits (73), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 24/139 (17%)
Query: 163 FSKMGLSHVNVVPQSQYGAESSGKAEASENLMAHSVSNDPNVSKDDGLREVLPKTNLKEV 222
FS++G VN + + ++GKA +E + S EV+P ++K +
Sbjct: 191 FSRLGDVEVNAGQNATFQCVAAGKAAEAERFLMQRQSG-----------EVVPAASVKHI 239
Query: 223 FPKTSLKEVLPKTTAVDSTSKSSKDVD--IGIAARGVGVL-LSSVDLNLPPVDSAP---- 275
+ L T +D SK +D+ + ++RG GV + + + PP AP
Sbjct: 240 SHRRFL-----ATFQLDEVSKGEQDLYRCVTQSSRGSGVSNFAELIVKEPPTPIAPPQLL 294
Query: 276 -SGSTMSIAPPASNITAGD 293
+GST I +N GD
Sbjct: 295 RAGSTYLIIQLNTNSIIGD 313
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 240,718,321
Number of Sequences: 539616
Number of extensions: 11028474
Number of successful extensions: 28946
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 69
Number of HSP's that attempted gapping in prelim test: 28767
Number of HSP's gapped (non-prelim): 265
length of query: 614
length of database: 191,569,459
effective HSP length: 124
effective length of query: 490
effective length of database: 124,657,075
effective search space: 61081966750
effective search space used: 61081966750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)