Query 007185
Match_columns 614
No_of_seqs 269 out of 755
Neff 4.3
Searched_HMMs 46136
Date Thu Mar 28 20:06:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007185.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007185hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06398 PB1_Joka2 The PB1 doma 99.8 7.8E-21 1.7E-25 166.5 10.9 85 5-90 1-90 (91)
2 cd06401 PB1_TFG The PB1 domain 99.8 7E-20 1.5E-24 157.0 9.1 77 5-86 1-80 (81)
3 cd06397 PB1_UP1 Uncharacterize 99.7 2.6E-18 5.7E-23 146.8 8.0 78 5-89 1-78 (82)
4 KOG4351 Uncharacterized conser 99.5 6.2E-15 1.4E-19 147.0 3.7 108 478-589 74-192 (244)
5 smart00666 PB1 PB1 domain. Pho 99.5 1.1E-13 2.5E-18 116.1 9.2 75 5-86 2-80 (81)
6 cd06402 PB1_p62 The PB1 domain 99.5 1.6E-13 3.5E-18 119.8 10.2 80 5-88 1-86 (87)
7 PF00564 PB1: PB1 domain; Int 99.5 2.3E-13 4.9E-18 114.5 10.2 78 4-88 1-83 (84)
8 cd02344 ZZ_HERC2 Zinc finger, 99.5 3.8E-14 8.3E-19 109.8 3.3 43 380-422 1-45 (45)
9 cd06407 PB1_NLP A PB1 domain i 99.5 3.8E-13 8.3E-18 116.0 9.8 77 5-87 1-81 (82)
10 cd02342 ZZ_UBA_plant Zinc fing 99.4 5E-14 1.1E-18 107.8 2.8 43 380-422 1-43 (43)
11 cd05992 PB1 The PB1 domain is 99.4 6.1E-13 1.3E-17 111.1 9.5 76 5-86 1-80 (81)
12 cd06396 PB1_NBR1 The PB1 domai 99.4 1.2E-12 2.6E-17 113.0 9.8 76 5-87 1-79 (81)
13 KOG4582 Uncharacterized conser 99.4 4.4E-13 9.4E-18 138.4 5.3 117 370-528 138-261 (278)
14 cd02339 ZZ_Mind_bomb Zinc fing 99.3 5.3E-13 1.2E-17 103.4 3.4 43 380-422 1-45 (45)
15 cd06404 PB1_aPKC PB1 domain is 99.3 5.3E-12 1.1E-16 109.2 9.2 77 5-87 1-81 (83)
16 cd02340 ZZ_NBR1_like Zinc fing 99.3 3.3E-12 7.1E-17 98.0 3.2 42 380-422 1-43 (43)
17 cd06403 PB1_Par6 The PB1 domai 99.2 4.7E-11 1E-15 102.4 8.8 78 5-87 1-78 (80)
18 cd02341 ZZ_ZZZ3 Zinc finger, Z 99.2 6.5E-12 1.4E-16 98.6 3.3 43 380-422 1-48 (48)
19 PF00569 ZZ: Zinc finger, ZZ t 99.2 6.1E-12 1.3E-16 97.4 2.6 44 376-419 1-46 (46)
20 cd02334 ZZ_dystrophin Zinc fin 99.2 7.5E-12 1.6E-16 98.7 3.0 41 380-420 1-47 (49)
21 cd02338 ZZ_PCMF_like Zinc fing 99.1 3.1E-11 6.8E-16 94.8 3.2 41 380-420 1-47 (49)
22 KOG4351 Uncharacterized conser 99.1 4.2E-11 9.1E-16 120.0 4.3 84 473-583 38-121 (244)
23 cd02345 ZZ_dah Zinc finger, ZZ 99.1 6.1E-11 1.3E-15 93.3 2.5 41 380-420 1-47 (49)
24 cd06408 PB1_NoxR The PB1 domai 99.0 4.2E-10 9E-15 98.3 7.2 63 4-75 2-64 (86)
25 cd02343 ZZ_EF Zinc finger, ZZ 99.0 2.2E-10 4.7E-15 90.1 2.6 32 380-412 1-32 (48)
26 cd02335 ZZ_ADA2 Zinc finger, Z 98.9 7.6E-10 1.6E-14 86.8 3.5 41 381-421 2-48 (49)
27 cd02249 ZZ Zinc finger, ZZ typ 98.9 8.9E-10 1.9E-14 85.2 3.4 42 380-422 1-46 (46)
28 smart00291 ZnF_ZZ Zinc-binding 98.9 1.2E-09 2.6E-14 83.9 3.2 35 377-412 2-36 (44)
29 cd02337 ZZ_CBP Zinc finger, ZZ 98.8 1.9E-09 4.1E-14 82.2 2.1 40 381-422 2-41 (41)
30 KOG1280 Uncharacterized conser 98.8 2.2E-09 4.8E-14 112.9 3.0 53 375-427 4-62 (381)
31 cd06409 PB1_MUG70 The MUG70 pr 98.5 8.2E-07 1.8E-11 77.9 9.0 74 7-87 5-84 (86)
32 KOG4286 Dystrophin-like protei 98.2 2.8E-07 6E-12 104.6 1.2 53 373-426 598-656 (966)
33 cd06406 PB1_P67 A PB1 domain i 98.1 8.8E-06 1.9E-10 70.6 7.7 72 5-85 3-76 (80)
34 KOG4301 Beta-dystrobrevin [Cyt 97.8 2.6E-06 5.7E-11 90.1 -1.7 48 358-412 226-273 (434)
35 cd06399 PB1_P40 The PB1 domain 97.5 0.00024 5.2E-09 62.7 6.3 61 12-77 12-72 (92)
36 KOG0457 Histone acetyltransfer 97.5 4.7E-05 1E-09 82.9 2.1 45 379-424 14-65 (438)
37 cd06410 PB1_UP2 Uncharacterize 97.3 0.0012 2.6E-08 59.2 8.4 61 8-76 16-80 (97)
38 cd02336 ZZ_RSC8 Zinc finger, Z 96.9 0.00069 1.5E-08 53.0 2.5 32 380-412 1-32 (45)
39 cd06395 PB1_Map2k5 PB1 domain 96.8 0.0028 6E-08 55.5 5.9 62 5-73 3-64 (91)
40 KOG3606 Cell polarity protein 96.8 0.0017 3.6E-08 67.8 5.2 84 3-91 17-100 (358)
41 COG5114 Histone acetyltransfer 96.4 0.0013 2.8E-08 69.7 1.2 46 379-424 5-56 (432)
42 KOG0695 Serine/threonine prote 95.7 0.035 7.7E-07 60.2 8.1 79 4-88 15-97 (593)
43 cd06411 PB1_p51 The PB1 domain 95.1 0.1 2.3E-06 45.5 7.8 55 30-85 17-74 (78)
44 PF07705 CARDB: CARDB; InterP 95.1 0.081 1.8E-06 44.8 7.0 68 489-564 11-78 (101)
45 PF14874 PapD-like: Flagellar- 93.1 1.2 2.6E-05 38.7 10.3 77 492-574 15-91 (102)
46 PF02017 CIDE-N: CIDE-N domain 91.9 0.47 1E-05 41.4 6.2 58 6-75 4-61 (78)
47 PF10633 NPCBM_assoc: NPCBM-as 91.8 1.4 3.1E-05 37.0 8.9 73 493-569 1-75 (78)
48 PF07649 C1_3: C1-like domain; 91.2 0.12 2.5E-06 36.7 1.4 28 381-410 2-30 (30)
49 PF14646 MYCBPAP: MYCBP-associ 90.1 1.5 3.2E-05 48.4 9.5 86 494-585 244-339 (426)
50 cd06536 CIDE_N_ICAD CIDE_N dom 88.2 1.8 3.9E-05 38.1 6.6 59 7-75 5-63 (80)
51 PF11543 UN_NPL4: Nuclear pore 86.4 1 2.2E-05 39.1 4.2 51 1-59 1-51 (80)
52 cd01615 CIDE_N CIDE_N domain, 85.4 2.9 6.4E-05 36.6 6.4 57 7-75 5-61 (78)
53 PF14560 Ubiquitin_2: Ubiquiti 85.3 2 4.4E-05 37.0 5.5 43 29-72 23-66 (87)
54 smart00266 CAD Domains present 85.1 3 6.4E-05 36.3 6.3 57 7-75 3-59 (74)
55 cd01789 Alp11_N Ubiquitin-like 84.4 4.5 9.8E-05 35.0 7.2 72 4-82 3-76 (84)
56 PF03107 C1_2: C1 domain; Int 83.4 0.74 1.6E-05 32.9 1.6 27 381-409 2-29 (30)
57 cd01812 BAG1_N Ubiquitin-like 82.0 5.1 0.00011 32.5 6.3 58 5-74 1-58 (71)
58 KOG1778 CREB binding protein/P 78.4 1 2.2E-05 48.6 1.3 44 379-424 169-212 (319)
59 smart00213 UBQ Ubiquitin homol 71.7 9.5 0.00021 29.7 5.0 57 6-74 2-58 (64)
60 cd06538 CIDE_N_FSP27 CIDE_N do 69.9 13 0.00028 32.9 5.7 56 7-75 5-60 (79)
61 KOG4151 Myosin assembly protei 69.3 2.1 4.6E-05 50.6 1.1 59 6-73 291-349 (748)
62 cd01803 Ubiquitin Ubiquitin. U 69.1 20 0.00044 29.2 6.6 71 5-88 3-73 (76)
63 PF09379 FERM_N: FERM N-termin 67.0 19 0.0004 29.9 6.1 56 14-75 7-63 (80)
64 PF02309 AUX_IAA: AUX/IAA fami 64.2 2.2 4.8E-05 42.9 0.0 73 5-85 110-203 (215)
65 cd06535 CIDE_N_CAD CIDE_N doma 63.4 24 0.00051 31.1 6.1 56 7-75 5-60 (77)
66 COG1470 Predicted membrane pro 62.4 72 0.0016 36.6 11.1 105 477-589 374-484 (513)
67 PF03915 AIP3: Actin interacti 61.0 2.8 6E-05 46.9 0.0 114 9-139 2-117 (424)
68 PF11325 DUF3127: Domain of un 60.6 29 0.00062 30.9 6.2 49 511-569 32-83 (84)
69 cd01792 ISG15_repeat1 ISG15 ub 58.1 48 0.001 28.1 7.1 76 1-87 1-76 (80)
70 PF02221 E1_DerP2_DerF2: ML do 55.3 38 0.00082 30.5 6.4 35 541-575 87-123 (134)
71 cd01809 Scythe_N Ubiquitin-lik 54.9 47 0.001 26.7 6.3 68 5-85 3-70 (72)
72 cd06539 CIDE_N_A CIDE_N domain 54.6 35 0.00077 30.1 5.7 57 7-75 5-61 (78)
73 COG2967 ApaG Uncharacterized p 53.8 54 0.0012 31.3 7.1 76 499-578 30-111 (126)
74 cd06537 CIDE_N_B CIDE_N domain 52.8 31 0.00068 30.6 5.1 56 7-75 5-60 (81)
75 PF07610 DUF1573: Protein of u 52.7 28 0.0006 26.9 4.3 44 503-554 2-45 (45)
76 cd01806 Nedd8 Nebb8-like ubiq 51.8 78 0.0017 25.7 7.2 70 5-87 3-72 (76)
77 PF11976 Rad60-SLD: Ubiquitin- 51.3 61 0.0013 26.4 6.5 47 6-57 2-48 (72)
78 cd01799 Hoil1_N Ubiquitin-like 49.5 39 0.00084 28.9 5.1 55 5-73 5-60 (75)
79 PF00643 zf-B_box: B-box zinc 48.5 16 0.00034 27.2 2.3 39 380-422 4-42 (42)
80 PRK10301 hypothetical protein; 46.1 47 0.001 31.1 5.5 33 548-580 86-118 (124)
81 cd06405 PB1_Mekk2_3 The PB1 do 45.0 1.4E+02 0.0031 26.4 7.8 71 6-87 2-77 (79)
82 KOG4317 Predicted Zn-finger pr 44.8 11 0.00023 41.0 1.2 32 380-415 8-40 (383)
83 PTZ00044 ubiquitin; Provisiona 44.6 71 0.0015 26.3 5.9 71 5-88 3-73 (76)
84 PF13473 Cupredoxin_1: Cupredo 44.4 18 0.0004 31.8 2.5 61 488-569 34-94 (104)
85 cd01800 SF3a120_C Ubiquitin-li 44.0 63 0.0014 27.1 5.6 62 17-88 9-70 (76)
86 PF04234 CopC: CopC domain; I 41.4 45 0.00096 29.4 4.4 30 548-577 59-88 (97)
87 smart00737 ML Domain involved 41.1 62 0.0014 28.9 5.4 35 541-575 73-109 (118)
88 PF07929 PRiA4_ORF3: Plasmid p 39.9 95 0.0021 30.1 6.9 46 3-54 3-52 (179)
89 cd01793 Fubi Fubi ubiquitin-li 39.3 97 0.0021 25.7 5.9 70 7-89 3-72 (74)
90 PF13598 DUF4139: Domain of un 37.8 1.2E+02 0.0026 31.7 7.7 48 497-552 167-214 (317)
91 PF01835 A2M_N: MG2 domain; I 37.1 29 0.00062 30.0 2.5 63 542-607 11-77 (99)
92 PF07975 C1_4: TFIIH C1-like d 34.4 28 0.0006 28.4 1.8 30 381-412 1-38 (51)
93 cd00917 PG-PI_TP The phosphati 34.2 91 0.002 28.6 5.4 33 541-574 78-112 (122)
94 PRK05461 apaG CO2+/MG2+ efflux 34.1 1.3E+02 0.0028 28.6 6.5 81 481-577 31-111 (127)
95 cd01810 ISG15_repeat2 ISG15 ub 33.9 1.2E+02 0.0027 25.1 5.8 70 6-88 2-71 (74)
96 KOG4582 Uncharacterized conser 33.8 14 0.0003 39.2 -0.0 142 7-166 10-151 (278)
97 COG5474 Uncharacterized conser 33.4 27 0.00059 33.9 1.9 55 19-73 4-66 (159)
98 cd01804 midnolin_N Ubiquitin-l 32.5 1.6E+02 0.0035 25.0 6.3 71 4-88 3-73 (78)
99 PLN02560 enoyl-CoA reductase 32.3 1.1E+02 0.0024 32.9 6.5 65 5-73 3-69 (308)
100 cd01802 AN1_N ubiquitin-like d 31.5 1.7E+02 0.0036 26.5 6.6 61 18-88 40-100 (103)
101 cd00029 C1 Protein kinase C co 31.4 23 0.0005 26.6 0.9 25 376-401 8-35 (50)
102 PF11906 DUF3426: Protein of u 31.1 3.3E+02 0.0072 25.3 8.8 64 495-559 66-139 (149)
103 KOG2990 C2C2-type Zn-finger pr 31.1 25 0.00054 37.8 1.4 22 374-395 47-68 (317)
104 COG1470 Predicted membrane pro 31.0 1.2E+02 0.0026 35.0 6.6 76 481-565 267-354 (513)
105 PF14445 Prok-RING_2: Prokaryo 30.5 8.6 0.00019 31.5 -1.6 34 379-412 7-50 (57)
106 PF15000 TUSC2: Tumour suppres 29.5 21 0.00046 33.3 0.5 9 54-62 53-61 (111)
107 COG2372 CopC Uncharacterized p 29.4 1.9E+02 0.0041 27.8 6.7 37 545-581 84-120 (127)
108 COG4815 Uncharacterized protei 29.3 2.1E+02 0.0045 27.8 6.9 58 544-602 36-100 (145)
109 PF02207 zf-UBR: Putative zinc 29.3 33 0.00071 28.9 1.5 33 393-425 12-48 (71)
110 PF00130 C1_1: Phorbol esters/ 28.8 43 0.00093 26.0 2.0 25 376-401 8-35 (53)
111 PF09544 DUF2381: Protein of u 28.5 1.9E+02 0.004 31.0 7.3 73 497-574 202-278 (289)
112 cd01794 DC_UbP_C dendritic cel 28.4 1.8E+02 0.0038 24.4 5.8 66 8-84 2-67 (70)
113 KOG2807 RNA polymerase II tran 28.2 25 0.00054 38.5 0.8 30 382-412 333-362 (378)
114 KOG0010 Ubiquitin-like protein 28.0 6E+02 0.013 29.5 11.4 79 4-94 15-93 (493)
115 PF10989 DUF2808: Protein of u 27.9 1.2E+02 0.0026 28.9 5.3 26 539-564 96-122 (146)
116 PF00394 Cu-oxidase: Multicopp 27.6 1.4E+02 0.003 28.3 5.6 69 492-568 63-136 (159)
117 cd01796 DDI1_N DNA damage indu 26.5 2E+02 0.0044 23.8 5.8 57 5-74 1-59 (71)
118 PF05753 TRAP_beta: Translocon 26.3 1.9E+02 0.0041 28.9 6.5 67 492-564 33-104 (181)
119 cd01805 RAD23_N Ubiquitin-like 26.0 3.7E+02 0.008 22.0 7.3 70 5-86 3-73 (77)
120 TIGR02656 cyanin_plasto plasto 25.5 3.2E+02 0.007 24.0 7.2 22 542-569 64-85 (99)
121 PF06030 DUF916: Bacterial pro 25.4 1.3E+02 0.0028 28.1 4.9 30 541-570 88-119 (121)
122 smart00109 C1 Protein kinase C 24.7 39 0.00084 25.1 1.1 24 377-401 9-34 (49)
123 COG0047 PurL Phosphoribosylfor 24.5 1.1E+02 0.0023 32.1 4.5 40 14-61 136-175 (231)
124 PF06280 DUF1034: Fn3-like dom 24.4 1.7E+02 0.0036 26.2 5.3 34 542-575 66-104 (112)
125 cd01813 UBP_N UBP ubiquitin pr 24.3 1.9E+02 0.0041 24.4 5.3 60 6-74 2-61 (74)
126 PF12969 DUF3857: Domain of Un 23.1 4.8E+02 0.01 24.3 8.3 50 536-590 84-135 (177)
127 cd01798 parkin_N amino-termina 23.1 1.9E+02 0.0041 23.6 4.9 66 6-84 2-67 (70)
128 cd01807 GDX_N ubiquitin-like d 23.1 2.3E+02 0.0049 23.5 5.5 69 5-86 3-71 (74)
129 cd00912 ML The ML (MD-2-relate 22.9 1.8E+02 0.0038 26.6 5.2 35 541-575 81-118 (127)
130 PF11470 TUG-UBL1: GLUT4 regul 22.7 1.2E+02 0.0025 25.7 3.7 40 14-58 5-44 (65)
131 TIGR02376 Cu_nitrite_red nitri 21.8 3.3E+02 0.0071 29.2 7.7 87 492-589 205-297 (311)
132 PRK02710 plastocyanin; Provisi 21.8 3.3E+02 0.0072 24.9 6.8 60 488-569 46-105 (119)
133 TIGR00622 ssl1 transcription f 21.4 58 0.0012 30.6 1.7 31 380-412 56-98 (112)
134 PF04379 DUF525: Protein of un 20.6 3.8E+02 0.0081 24.0 6.6 71 485-573 18-90 (90)
135 cd01808 hPLIC_N Ubiquitin-like 20.6 3.3E+02 0.0072 22.3 6.0 67 4-84 2-68 (71)
136 PF12760 Zn_Tnp_IS1595: Transp 20.3 61 0.0013 25.1 1.4 26 376-401 15-44 (46)
137 PF12744 ATG19_autophagy: Auto 20.2 1.4E+02 0.0031 31.3 4.5 22 500-521 94-115 (236)
No 1
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=99.84 E-value=7.8e-21 Score=166.47 Aligned_cols=85 Identities=60% Similarity=0.983 Sum_probs=79.8
Q ss_pred eEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHc-----cC
Q 007185 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQ-----RL 79 (614)
Q Consensus 5 lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q-----~l 79 (614)
|+|||+||+++|||+++..++ +.++++.+|+.||++.|+++++.+|+|+|+|||||+|+|++|+||.+||.. +.
T Consensus 1 l~vKv~y~~~~rRf~l~~~~~-~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~~~~~~~~ 79 (91)
T cd06398 1 LVVKVKYGGTLRRFTFPVAEN-QLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQYFCSGSRL 79 (91)
T ss_pred CEEEEEeCCEEEEEEeccccc-cCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHHHHHhccCCC
Confidence 689999999999999998766 789999999999999999999999999999999999999999999999843 69
Q ss_pred ceEEEEEEecC
Q 007185 80 KFLRIDVHLNN 90 (614)
Q Consensus 80 ~~L~i~V~l~~ 90 (614)
++|||.|++++
T Consensus 80 ~~lrl~v~~~~ 90 (91)
T cd06398 80 NPLRIDVTVDY 90 (91)
T ss_pred ceEEEEEEEec
Confidence 99999999876
No 2
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=99.81 E-value=7e-20 Score=157.01 Aligned_cols=77 Identities=30% Similarity=0.537 Sum_probs=67.8
Q ss_pred eEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcC--CCCCCcceEEEecCCCCEEEecCchhHHHHH-HccCce
Q 007185 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFN--FPHDSDLTLTYVDEDGDIVTLVDDDDLCDVM-RQRLKF 81 (614)
Q Consensus 5 lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~--l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~-~q~l~~ 81 (614)
++||+.||||+|||++|+ .++++.+|++|||++|+ ++++.+|.|||+|+|||+|||++++||..|+ ..++++
T Consensus 1 ~iiK~~~g~DiR~~~~~~-----~~~t~~~L~~~v~~~F~~~~~~~~~flIKYkD~dGDlVTIts~~dL~~A~~~~~~~~ 75 (81)
T cd06401 1 LILKAQLGDDIRRIPIHN-----EDITYDELLLMMQRVFRGKLGSSDDVLIKYKDEDGDLITIFDSSDLSFAIQCSRILK 75 (81)
T ss_pred CeEEEEeCCeEEEEeccC-----ccccHHHHHHHHHHHhccccCCcccEEEEEECCCCCEEEeccHHHHHHHHhcCcceE
Confidence 589999999999999993 24677789999999996 8889999999999999999999999999998 556766
Q ss_pred EEEEE
Q 007185 82 LRIDV 86 (614)
Q Consensus 82 L~i~V 86 (614)
|+|.|
T Consensus 76 l~~~~ 80 (81)
T cd06401 76 LTLFV 80 (81)
T ss_pred EEEec
Confidence 66654
No 3
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=99.75 E-value=2.6e-18 Score=146.78 Aligned_cols=78 Identities=26% Similarity=0.354 Sum_probs=66.1
Q ss_pred eEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceEEE
Q 007185 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRI 84 (614)
Q Consensus 5 lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L~i 84 (614)
+.+|++||+++|||+.+. ++++++|+.||.++|+|++++ |.|||.|||||+|||+||+||.+|++|.-.-+.+
T Consensus 1 ~~fKv~~~g~~RRf~~~~------~pt~~~L~~kl~~Lf~lp~~~-~~vtYiDeD~D~ITlssd~eL~d~~~~~~~~~~~ 73 (82)
T cd06397 1 TQFKSSFLGDTRRIVFPD------IPTWEALASKLENLYNLPEIK-VGVTYIDNDNDEITLSSNKELQDFYRLSHRESTE 73 (82)
T ss_pred CeEEEEeCCceEEEecCC------CccHHHHHHHHHHHhCCChhH-eEEEEEcCCCCEEEecchHHHHHHHHhcccccCc
Confidence 468999999999999883 689999999999999998775 9999999999999999999999999654332444
Q ss_pred EEEec
Q 007185 85 DVHLN 89 (614)
Q Consensus 85 ~V~l~ 89 (614)
...+|
T Consensus 74 v~k~~ 78 (82)
T cd06397 74 VIKLN 78 (82)
T ss_pred eeEee
Confidence 44433
No 4
>KOG4351 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.51 E-value=6.2e-15 Score=147.01 Aligned_cols=108 Identities=22% Similarity=0.455 Sum_probs=96.0
Q ss_pred ceEEeeeeecCCCcee-----------CCCCcEEEEEEEEeccCCCCCCCcEEEEecCCCCCCCCceeeeccCCCCCCCC
Q 007185 478 DSCFILDVNVLDGTMM-----------APSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEG 546 (614)
Q Consensus 478 ~A~FV~DVTipDGT~V-----------~Pgt~FtKtWrLrN~Gt~~WP~G~~L~fvgGd~m~~~~sv~~~ipv~~v~PGe 546 (614)
.+.|+.++++.++.++ +|+.+|++.|||+|.|...||.|.+|.+++||.+....-. . .+.+.|+|
T Consensus 74 ~~~~~~~lsv~~~~~i~~e~~v~v~f~aP~~~y~s~WRl~n~G~~~Wp~~~~lk~~~~d~~~~~n~~--~--~~sLdP~E 149 (244)
T KOG4351|consen 74 GMLFVASLSVKDQEVIGHEGVVSVEFIAPALEYTSHWRLQNSGPRVWPSDPCLKEVSPDQIEKGNIS--S--SPSLDPQE 149 (244)
T ss_pred ccceeeeeeecceeeeccccceeeeecCCCccceeeEEEecCCceeCCCCCcccccCCccccceeee--c--ccccCchh
Confidence 4678888888888866 9999999999999999999999999999999998764311 1 23577999
Q ss_pred EEEEEEEEecCCCCceEEEEEEEECCCCCccCCeEEEEEEEec
Q 007185 547 EIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRVWVLIQVLR 589 (614)
Q Consensus 547 evdVSV~L~AP~~pG~yiSyWRL~tpdG~~FG~~LWv~I~V~~ 589 (614)
+.+|.+.+.+|.++|.|...||+++++|.+||+.||+++.+..
T Consensus 150 ~~~I~~~~s~P~e~g~~~~~~q~vt~e~~~~GesiwvI~~~~~ 192 (244)
T KOG4351|consen 150 ETDILAKESRPGEVGEIPGKWQNVTSENLLYGESIWVIPAGDL 192 (244)
T ss_pred hhhhhhhhcCCCccccccchheeecccceeeecceEEeecCCC
Confidence 9999999999999999999999999999999999999999754
No 5
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=99.49 E-value=1.1e-13 Score=116.13 Aligned_cols=75 Identities=36% Similarity=0.669 Sum_probs=65.0
Q ss_pred eEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHH-cc---Cc
Q 007185 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMR-QR---LK 80 (614)
Q Consensus 5 lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~-q~---l~ 80 (614)
+.||++||+++|||.++. +.++++|+.+|++.|++. ...|.|+|+|||||+|||.+|+||..|+. .+ ..
T Consensus 2 ~~vK~~~~~~~~~~~~~~------~~s~~dL~~~i~~~~~~~-~~~~~l~Y~Dedgd~v~l~sd~Dl~~a~~~~~~~~~~ 74 (81)
T smart00666 2 VDVKLRYGGETRRLSVPR------DISFEDLRSKVAKRFGLD-NQSFTLKYQDEDGDLVSLTSDEDLEEAIEEYDSLGSK 74 (81)
T ss_pred ccEEEEECCEEEEEEECC------CCCHHHHHHHHHHHhCCC-CCCeEEEEECCCCCEEEecCHHHHHHHHHHHHHcCCc
Confidence 679999999999999983 468889999999999985 47899999999999999999999999882 22 35
Q ss_pred eEEEEE
Q 007185 81 FLRIDV 86 (614)
Q Consensus 81 ~L~i~V 86 (614)
.|+|.|
T Consensus 75 ~l~l~v 80 (81)
T smart00666 75 KLRLHV 80 (81)
T ss_pred eEEEEe
Confidence 677765
No 6
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=99.49 E-value=1.6e-13 Score=119.77 Aligned_cols=80 Identities=21% Similarity=0.381 Sum_probs=67.6
Q ss_pred eEEEEee-----CCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHc-c
Q 007185 5 MVIKVKY-----GDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQ-R 78 (614)
Q Consensus 5 lviKvk~-----gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q-~ 78 (614)
+.|||-+ ..++|||.++. ....++..|+.+|+++|.+..+.+|+|||+|||||+|||.+|+||..|+.+ .
T Consensus 1 ~~vkayl~~~~~~~EIRRf~l~~----~~~~s~~~L~~~V~~~f~~l~~~~ftlky~DeeGDlvtIssdeEL~~A~~~~~ 76 (87)
T cd06402 1 LTVKAYLLGKDANAEIRRFAIDE----DVSTSYEYLVEKVAAVFPSLRGKNFQLFWKDEEGDLVAFSSDEELVMALGSLN 76 (87)
T ss_pred CeEEEeecCCCCccceEEEEecC----CCCcCHHHHHHHHHHHccccCCCcEEEEEECCCCCEEeecCHHHHHHHHHcCC
Confidence 3577766 35799999984 345788899999999998777899999999999999999999999999954 3
Q ss_pred CceEEEEEEe
Q 007185 79 LKFLRIDVHL 88 (614)
Q Consensus 79 l~~L~i~V~l 88 (614)
-..|||.|+.
T Consensus 77 ~~~~RlyI~~ 86 (87)
T cd06402 77 DDTFRIYIKE 86 (87)
T ss_pred CCcEEEEEEe
Confidence 5678888863
No 7
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=99.48 E-value=2.3e-13 Score=114.47 Aligned_cols=78 Identities=42% Similarity=0.694 Sum_probs=67.2
Q ss_pred eeEEEEeeCCccee-eeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHc----c
Q 007185 4 TMVIKVKYGDTLRR-FNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQ----R 78 (614)
Q Consensus 4 ~lviKvk~gddlRR-f~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q----~ 78 (614)
|+.||+.|+++.|| |.+.. ..++++|+.+|++.|++. ..+|.|+|+|+|||+|+|.+|+||.+|+.. .
T Consensus 1 t~~vK~~~~~~~~~~~~~~~------~~s~~~L~~~i~~~~~~~-~~~~~l~Y~D~dgD~V~i~sd~Dl~~a~~~~~~~~ 73 (84)
T PF00564_consen 1 TVRVKVRYGGDIRRIISLPS------DVSFDDLRSKIREKFGLL-DEDFQLKYKDEDGDLVTISSDEDLQEAIEQAKESG 73 (84)
T ss_dssp SEEEEEEETTEEEEEEEECS------TSHHHHHHHHHHHHHTTS-TSSEEEEEEETTSSEEEESSHHHHHHHHHHHHHCT
T ss_pred CEEEEEEECCeeEEEEEcCC------CCCHHHHHHHHHHHhCCC-CccEEEEeeCCCCCEEEeCCHHHHHHHHHHHHhcC
Confidence 57899999999999 66662 248889999999999986 789999999999999999999999998732 3
Q ss_pred CceEEEEEEe
Q 007185 79 LKFLRIDVHL 88 (614)
Q Consensus 79 l~~L~i~V~l 88 (614)
-.+|+|.|+-
T Consensus 74 ~~~lrl~v~~ 83 (84)
T PF00564_consen 74 SKTLRLFVQD 83 (84)
T ss_dssp TSCEEEEEEE
T ss_pred CCcEEEEEEe
Confidence 4589888863
No 8
>cd02344 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=99.45 E-value=3.8e-14 Score=109.81 Aligned_cols=43 Identities=47% Similarity=1.048 Sum_probs=39.7
Q ss_pred eecCCCCCCCccccceecCCCCCcchhhhhhhh--CCCCcceEEe
Q 007185 380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAA--MGSEADYIRI 422 (614)
Q Consensus 380 V~CDgC~~~pI~G~RYKCsvC~DyDLC~~C~a~--~~~~H~~~ki 422 (614)
|.||+|+..||.|.||||++|.|||||+.||.. |...|.|.||
T Consensus 1 V~Cd~C~~~pI~G~RykC~~C~dyDLC~~Cf~~~~H~~~H~F~ri 45 (45)
T cd02344 1 VTCDGCQMFPINGPRFKCRNCDDFDFCENCFKTRKHNTRHTFGRI 45 (45)
T ss_pred CCCCCCCCCCCccCeEECCCCCCccchHHhhCCCCcCCCCceeeC
Confidence 689999989999999999999999999999987 5568999886
No 9
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=99.45 E-value=3.8e-13 Score=116.01 Aligned_cols=77 Identities=27% Similarity=0.440 Sum_probs=66.9
Q ss_pred eEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHH----HccCc
Q 007185 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVM----RQRLK 80 (614)
Q Consensus 5 lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~----~q~l~ 80 (614)
+.|||.||+|++||.+.. +..+.+|+.+|++.|++.....|.|||+|+|||.|+|..|+||.+|+ ..+..
T Consensus 1 ~~vK~~~~~d~~r~~l~~------~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL~eai~i~~~~~~~ 74 (82)
T cd06407 1 VRVKATYGEEKIRFRLPP------SWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADLEECIDVYRSSGSH 74 (82)
T ss_pred CEEEEEeCCeEEEEEcCC------CCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHHHHHHHHHHHCCCC
Confidence 469999999999999994 35788999999999999655899999999999999999999999965 33567
Q ss_pred eEEEEEE
Q 007185 81 FLRIDVH 87 (614)
Q Consensus 81 ~L~i~V~ 87 (614)
.++|.|+
T Consensus 75 ~v~l~v~ 81 (82)
T cd06407 75 TIRLLVH 81 (82)
T ss_pred eEEEEee
Confidence 7777774
No 10
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=99.43 E-value=5e-14 Score=107.84 Aligned_cols=43 Identities=72% Similarity=1.507 Sum_probs=40.6
Q ss_pred eecCCCCCCCccccceecCCCCCcchhhhhhhhCCCCcceEEe
Q 007185 380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRI 422 (614)
Q Consensus 380 V~CDgC~~~pI~G~RYKCsvC~DyDLC~~C~a~~~~~H~~~ki 422 (614)
|.||+|++.||+|.||||.+|.|||||+.||..+++...|++|
T Consensus 1 I~CDgCg~~PI~G~RykC~~C~dyDLC~~C~~~~~n~~~y~~~ 43 (43)
T cd02342 1 IQCDGCGVLPITGPRYKSKVKEDYDLCTICFSRMGNEGEYTRI 43 (43)
T ss_pred CCCCCCCCCcccccceEeCCCCCCccHHHHhhhhcChhheeeC
Confidence 6899999999999999999999999999999999999888875
No 11
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=99.43 E-value=6.1e-13 Score=111.13 Aligned_cols=76 Identities=38% Similarity=0.631 Sum_probs=65.2
Q ss_pred eEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHc----cCc
Q 007185 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQ----RLK 80 (614)
Q Consensus 5 lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q----~l~ 80 (614)
+.||++|++++|||.+.. -..++++|+++|++.|++.. ..|.|+|+|||||+|+|.+|+||..|+.+ .-.
T Consensus 1 ~~vK~~~~~~~~~~~~~~-----~~~s~~~L~~~i~~~~~~~~-~~~~l~y~D~e~d~v~l~sd~Dl~~a~~~~~~~~~~ 74 (81)
T cd05992 1 VRVKVKYGGEIRRFVVVS-----RSISFEDLRSKIAEKFGLDA-VSFKLKYPDEDGDLVTISSDEDLEEAIEEARRSGSK 74 (81)
T ss_pred CcEEEEecCCCEEEEEec-----CCCCHHHHHHHHHHHhCCCC-CcEEEEeeCCCCCEEEeCCHHHHHHHHHHHhhcCCc
Confidence 469999999999999993 34688899999999999865 89999999999999999999999999843 245
Q ss_pred eEEEEE
Q 007185 81 FLRIDV 86 (614)
Q Consensus 81 ~L~i~V 86 (614)
+|+|.|
T Consensus 75 ~l~l~v 80 (81)
T cd05992 75 KLRLFV 80 (81)
T ss_pred cEEEEe
Confidence 666654
No 12
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=99.41 E-value=1.2e-12 Score=112.97 Aligned_cols=76 Identities=21% Similarity=0.399 Sum_probs=66.8
Q ss_pred eEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHH---HccCce
Q 007185 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVM---RQRLKF 81 (614)
Q Consensus 5 lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~---~q~l~~ 81 (614)
+.|||.||++.+||.+..++ ...+.+|..+|+..|+|. .|.|||.|+|||.|||..|.||.+|+ ..+-+.
T Consensus 1 V~vKaty~~d~~rf~~~~~~----~~~~~~L~~ev~~rf~l~---~f~lKYlDde~e~v~lssd~eLeE~~rl~~~~~~~ 73 (81)
T cd06396 1 VNLKVTYNGESQSFLVSDSE----NTTWASVEAMVKVSFGLN---DIQIKYVDEENEEVSVNSQGEYEEALKSAVRQGNL 73 (81)
T ss_pred CEEEEEECCeEEEEEecCCC----CCCHHHHHHHHHHHhCCC---cceeEEEcCCCCEEEEEchhhHHHHHHHHHhCCCE
Confidence 46999999999999999532 357889999999999996 99999999999999999999999976 445688
Q ss_pred EEEEEE
Q 007185 82 LRIDVH 87 (614)
Q Consensus 82 L~i~V~ 87 (614)
||+.|.
T Consensus 74 l~~~v~ 79 (81)
T cd06396 74 LQMNVY 79 (81)
T ss_pred EEEEEe
Confidence 999884
No 13
>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only]
Probab=99.36 E-value=4.4e-13 Score=138.40 Aligned_cols=117 Identities=25% Similarity=0.374 Sum_probs=83.1
Q ss_pred CccCCcccCc-----eecCCCCCCCccccceecCCCCCcchhhhhhhh--CCCCcceEEecCCcCcCCCCCccCcCCCCC
Q 007185 370 DALMGMFHKG-----VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAA--MGSEADYIRIDRPVHYRHPRPFRGLYDHRQ 442 (614)
Q Consensus 370 ~~~~~vvH~G-----V~CDgC~~~pI~G~RYKCsvC~DyDLC~~C~a~--~~~~H~~~ki~~Pv~~~~~~~~~g~~d~~~ 442 (614)
+...+.+|.+ +.||+|+..+|+|.||||++|.|||||+.||+. ++..|.|++|.+- ...+.+ ..+.
T Consensus 138 ~~~~~~~H~~~~~~~v~CD~C~~~~IvG~RyKC~~C~dYDLCe~Ce~~~~~h~~H~~lR~~t~-----~t~~~~--~~~~ 210 (278)
T KOG4582|consen 138 NPVVGEMHPNISKLSVPCDNCGKPGIVGARYKCTVCPDYDLCERCEAGNEHHAAHAMLRLHTN-----ETPFSG--YVML 210 (278)
T ss_pred CCCccccCCCcccccccCCCccCCccccceeeecCCCccchhHHhhcCCCCCcccceeecccc-----cCCCCc--ceec
Confidence 3455789999 999999976999999999999999999999998 5778999997661 111111 0000
Q ss_pred CccCCCCCCCccCCCCCCCccccccCCCCCCCCCcceEEeeeeecCCCceeCCCCcEEEEEEEEeccCCCCCCCcEEEEe
Q 007185 443 NFWLGTPGPDTQHVGALGAPHILRDRGIKPGRSRLDSCFILDVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWI 522 (614)
Q Consensus 443 ~~~~~~p~~~~~~~~~~~~p~v~~~~~~~~~~~~l~A~FV~DVTipDGT~V~Pgt~FtKtWrLrN~Gt~~WP~G~~L~fv 522 (614)
. + . .....+.. -+-.+.+...|.+.|.+++.|...|+.|+...+.
T Consensus 211 ~------~--------p------------~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (278)
T KOG4582|consen 211 S------S--------P------------PNPVNLNK---------RPIFVGHSKVRGNDWYWTSLGGGEGRIGRVNEIV 255 (278)
T ss_pred c------C--------C------------CCcccccc---------cccccccccccccCCccccccCCCCCCccccccc
Confidence 0 0 0 00000111 1224456678999999999999999999999998
Q ss_pred cCCCCC
Q 007185 523 GGDKFS 528 (614)
Q Consensus 523 gGd~m~ 528 (614)
+++...
T Consensus 256 ~~~~~~ 261 (278)
T KOG4582|consen 256 LWINGP 261 (278)
T ss_pred cccccc
Confidence 887544
No 14
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=99.34 E-value=5.3e-13 Score=103.40 Aligned_cols=43 Identities=33% Similarity=0.716 Sum_probs=39.2
Q ss_pred eecCCCCCCCccccceecCCCCCcchhhhhhhh--CCCCcceEEe
Q 007185 380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAA--MGSEADYIRI 422 (614)
Q Consensus 380 V~CDgC~~~pI~G~RYKCsvC~DyDLC~~C~a~--~~~~H~~~ki 422 (614)
|.||+|+..+|.|.||||++|.|||||+.||.. |++.|+|+++
T Consensus 1 i~Cd~C~~~~i~G~RykC~~C~dyDLC~~C~~~~~H~~~H~f~r~ 45 (45)
T cd02339 1 IICDTCRKQGIIGIRWKCAECPNYDLCTTCYHGDKHDLEHRFYRY 45 (45)
T ss_pred CCCCCCCCCCcccCeEECCCCCCccchHHHhCCCCCCCCCCEEeC
Confidence 689999988999999999999999999999976 5678999874
No 15
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=99.33 E-value=5.3e-12 Score=109.18 Aligned_cols=77 Identities=21% Similarity=0.396 Sum_probs=67.0
Q ss_pred eEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHH----HccCc
Q 007185 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVM----RQRLK 80 (614)
Q Consensus 5 lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~----~q~l~ 80 (614)
+-||+.|++|++++.+.+. +++..|..+|+++|+|..+..|+|||+|||||.|||..|.+|..|+ ..+-.
T Consensus 1 i~~K~~y~gdi~it~~d~~------~s~e~L~~~v~~~c~~~~~q~ft~kw~DEEGDp~tiSS~~EL~EA~rl~~~n~~~ 74 (83)
T cd06404 1 VRVKAAYNGDIMITSIDPS------ISLEELCNEVRDMCRFHNDQPFTLKWIDEEGDPCTISSQMELEEAFRLYELNKDS 74 (83)
T ss_pred CeEEEEecCcEEEEEcCCC------cCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCceeecCHHHHHHHHHHHHhcCcc
Confidence 3589999999999999953 5777899999999999999999999999999999999999999875 33555
Q ss_pred eEEEEEE
Q 007185 81 FLRIDVH 87 (614)
Q Consensus 81 ~L~i~V~ 87 (614)
.|.|-|+
T Consensus 75 ~l~ihvf 81 (83)
T cd06404 75 ELNIHVF 81 (83)
T ss_pred cEEEEec
Confidence 6777665
No 16
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=99.25 E-value=3.3e-12 Score=97.98 Aligned_cols=42 Identities=48% Similarity=0.884 Sum_probs=37.8
Q ss_pred eecCCCCCCCccccceecCCCCCcchhhhhhhh-CCCCcceEEe
Q 007185 380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAA-MGSEADYIRI 422 (614)
Q Consensus 380 V~CDgC~~~pI~G~RYKCsvC~DyDLC~~C~a~-~~~~H~~~ki 422 (614)
|.||+|+. +|.|.||||++|+|||||+.||.. .++.|+|++|
T Consensus 1 v~Cd~C~~-~i~G~ry~C~~C~d~dLC~~C~~~~~H~~H~f~~~ 43 (43)
T cd02340 1 VICDGCQG-PIVGVRYKCLVCPDYDLCESCEAKGVHPEHAMLKI 43 (43)
T ss_pred CCCCCCCC-cCcCCeEECCCCCCccchHHhhCcCCCCCCCEEeC
Confidence 58999995 999999999999999999999988 2478999875
No 17
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=99.22 E-value=4.7e-11 Score=102.41 Aligned_cols=78 Identities=22% Similarity=0.479 Sum_probs=67.7
Q ss_pred eEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceEEE
Q 007185 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRI 84 (614)
Q Consensus 5 lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L~i 84 (614)
+.||.||+...|||++.-+. .-.+.++..+|+++++|. +.+|+|+|+|.|||+++|..|+.|..|+...---|||
T Consensus 1 veVKSkfdaEfRRFsl~r~~----~~~f~ef~~ll~~lH~l~-~~~f~i~Y~D~~gDLLPInNDdNf~kAlssa~plLRl 75 (80)
T cd06403 1 VEVKSKFDAEFRRFSLDRNK----PGKFEDFYKLLEHLHHIP-NVDFLIGYTDPHGDLLPINNDDNFLKALSSANPLLRI 75 (80)
T ss_pred CceecccCCeEEEEEecccc----CcCHHHHHHHHHHHhCCC-CCcEEEEEeCCCCCEecccCcHHHHHHHHcCCCceEE
Confidence 47999999999999999652 357788999999999995 7999999999999999999999999999543344788
Q ss_pred EEE
Q 007185 85 DVH 87 (614)
Q Consensus 85 ~V~ 87 (614)
.||
T Consensus 76 ~iq 78 (80)
T cd06403 76 FIQ 78 (80)
T ss_pred EEE
Confidence 886
No 18
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=99.22 E-value=6.5e-12 Score=98.64 Aligned_cols=43 Identities=35% Similarity=0.869 Sum_probs=38.5
Q ss_pred eecCCCCCCCccccceecCCCC--Ccchhhhhhhh---CCCCcceEEe
Q 007185 380 VRCDGCGVHPITGPRFKSKVKD--DYDLCSICFAA---MGSEADYIRI 422 (614)
Q Consensus 380 V~CDgC~~~pI~G~RYKCsvC~--DyDLC~~C~a~---~~~~H~~~ki 422 (614)
+.||+|+..||+|.||+|++|. |||||+.||.. |..+|.|.+|
T Consensus 1 y~Cd~C~~~pI~G~R~~C~~C~~~d~DlC~~C~~~~~~H~~~H~~~~i 48 (48)
T cd02341 1 FKCDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVKGESHQEDHWLVKI 48 (48)
T ss_pred CCCCCCCCCccccceEECCCCCCCCCccCHHHHhCcCCCCCCCceeeC
Confidence 4699999889999999999999 99999999987 4678888875
No 19
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=99.21 E-value=6.1e-12 Score=97.42 Aligned_cols=44 Identities=43% Similarity=0.953 Sum_probs=35.2
Q ss_pred ccCceecCCCCCCCccccceecCCCCCcchhhhhhhh--CCCCcce
Q 007185 376 FHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAA--MGSEADY 419 (614)
Q Consensus 376 vH~GV~CDgC~~~pI~G~RYKCsvC~DyDLC~~C~a~--~~~~H~~ 419 (614)
+|.++.||+|+..+|.|.||+|.+|+|||||+.||.. ....|.|
T Consensus 1 ~h~~~~C~~C~~~~i~g~Ry~C~~C~d~dLC~~C~~~g~~~~~H~~ 46 (46)
T PF00569_consen 1 IHHGYTCDGCGTDPIIGVRYHCLVCPDYDLCEDCFSKGRHSHNHKM 46 (46)
T ss_dssp -CSSCE-SSS-SSSEESSEEEESSSSS-EEEHHHHHH--H-SSSSE
T ss_pred CCCCeECcCCCCCcCcCCeEECCCCCCCchhhHHHhCcCCCCCcCc
Confidence 4899999999977999999999999999999999988 4556654
No 20
>cd02334 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.
Probab=99.20 E-value=7.5e-12 Score=98.68 Aligned_cols=41 Identities=32% Similarity=0.647 Sum_probs=35.9
Q ss_pred eecCCCCCCCccccceecCCCCCcchhhhhhhh------CCCCcceE
Q 007185 380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAA------MGSEADYI 420 (614)
Q Consensus 380 V~CDgC~~~pI~G~RYKCsvC~DyDLC~~C~a~------~~~~H~~~ 420 (614)
+.||+|+..||.|.||||++|.|||||+.||.. |.+.|+|.
T Consensus 1 ~~Cd~C~~~pi~g~RykC~~C~d~DLC~~Cf~~g~~~~~H~~~Hp~~ 47 (49)
T cd02334 1 AKCNICKEFPITGFRYRCLKCFNYDLCQSCFFSGRTSKSHKNSHPMK 47 (49)
T ss_pred CCCCCCCCCCceeeeEECCCCCCcCchHHHHhCCCcCCCCCCCCCee
Confidence 579999988999999999999999999999976 45567664
No 21
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=99.12 E-value=3.1e-11 Score=94.83 Aligned_cols=41 Identities=39% Similarity=0.788 Sum_probs=35.9
Q ss_pred eecCCCCCCCccccceecCCCCCcchhhhhhhh------CCCCcceE
Q 007185 380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAA------MGSEADYI 420 (614)
Q Consensus 380 V~CDgC~~~pI~G~RYKCsvC~DyDLC~~C~a~------~~~~H~~~ 420 (614)
|.||+|+..+|.|.||+|.+|.|||||+.||.. |.++|+|.
T Consensus 1 i~C~~C~~~~i~g~R~~C~~C~d~dlC~~Cf~~~~~~~~H~~~H~~~ 47 (49)
T cd02338 1 VSCDGCGKSNFTGRRYKCLICYDYDLCADCYDSGVTTERHLFDHPMQ 47 (49)
T ss_pred CCCCCCcCCCcEEeeEEeCCCCCCccchhHHhCCCcCCCCCCCCCEE
Confidence 689999988999999999999999999999987 34467764
No 22
>KOG4351 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=4.2e-11 Score=119.95 Aligned_cols=84 Identities=33% Similarity=0.658 Sum_probs=70.0
Q ss_pred CCCCcceEEeeeeecCCCceeCCCCcEEEEEEEEeccCCCCCCCcEEEEecCCCCCCCCceeeeccCCCCCCCCEEEEEE
Q 007185 473 GRSRLDSCFILDVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAV 552 (614)
Q Consensus 473 ~~~~l~A~FV~DVTipDGT~V~Pgt~FtKtWrLrN~Gt~~WP~G~~L~fvgGd~m~~~~sv~~~ipv~~v~PGeevdVSV 552 (614)
..+.+.|+|+.|+ |.|+|||.|++.|+.++.|++++|+.+....++.... ..|-+..|+|
T Consensus 38 m~P~~~aaF~Ld~---------------knW~lqna~sv~~d~~t~l~~m~~~~~~~~lsv~~~~-----~i~~e~~v~v 97 (244)
T KOG4351|consen 38 MNPMLSAAFVLDM---------------KNWNLQNAGSVYWDQDTKLKSMPGMLFVASLSVKDQE-----VIGHEGVVSV 97 (244)
T ss_pred cCcccccceeeec---------------cceeccccccEEEcCCCceeeccccceeeeeeeccee-----eeccccceee
Confidence 3456889999996 9999999999999999999999999776533332222 2588999999
Q ss_pred EEecCCCCceEEEEEEEECCCCCccCCeEEE
Q 007185 553 DFTAPELPGRYISYWRMSSPSGVKFGQRVWV 583 (614)
Q Consensus 553 ~L~AP~~pG~yiSyWRL~tpdG~~FG~~LWv 583 (614)
+|+||..+ |++||||.+. |.+.||
T Consensus 98 ~f~aP~~~--y~s~WRl~n~-----G~~~Wp 121 (244)
T KOG4351|consen 98 EFIAPALE--YTSHWRLQNS-----GPRVWP 121 (244)
T ss_pred eecCCCcc--ceeeEEEecC-----CceeCC
Confidence 99999999 9999999985 777777
No 23
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=99.07 E-value=6.1e-11 Score=93.26 Aligned_cols=41 Identities=32% Similarity=0.631 Sum_probs=35.5
Q ss_pred eecCCCCCCCccccceecCCCCCcchhhhhhhh------CCCCcceE
Q 007185 380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAA------MGSEADYI 420 (614)
Q Consensus 380 V~CDgC~~~pI~G~RYKCsvC~DyDLC~~C~a~------~~~~H~~~ 420 (614)
+.||+|+..+|.|.||+|++|.|||||..||.. |.+.|+|.
T Consensus 1 ~~C~~C~~~~i~g~R~~C~~C~dydLC~~Cf~~~~~~~~H~~~H~~~ 47 (49)
T cd02345 1 LSCSACRKQDISGIRFPCQVCRDYSLCLGCYTKGRETKRHNSLHIMY 47 (49)
T ss_pred CcCCCCCCCCceEeeEECCCCCCcCchHHHHhCCCcCCCCCCCCCcc
Confidence 579999977999999999999999999999985 34566664
No 24
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=99.05 E-value=4.2e-10 Score=98.32 Aligned_cols=63 Identities=29% Similarity=0.445 Sum_probs=58.1
Q ss_pred eeEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHH
Q 007185 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVM 75 (614)
Q Consensus 4 ~lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~ 75 (614)
++-|||.|++|+|-+.++. ++.|.+|..+|+..|+|. ..|+|||+|| ||.|||.|++||..||
T Consensus 2 ~ikVKv~~~~Dv~~i~v~~------~i~f~dL~~kIrdkf~~~--~~~~iKykDE-GD~iti~sq~DLd~Ai 64 (86)
T cd06408 2 KIRVKVHAQDDTRYIMIGP------DTGFADFEDKIRDKFGFK--RRLKIKMKDD-GDMITMGDQDDLDMAI 64 (86)
T ss_pred cEEEEEEecCcEEEEEcCC------CCCHHHHHHHHHHHhCCC--CceEEEEEcC-CCCccccCHHHHHHHH
Confidence 4789999999999999983 578899999999999994 6999999999 9999999999999987
No 25
>cd02343 ZZ_EF Zinc finger, ZZ type. Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=98.98 E-value=2.2e-10 Score=90.15 Aligned_cols=32 Identities=34% Similarity=0.783 Sum_probs=29.7
Q ss_pred eecCCCCCCCccccceecCCCCCcchhhhhhhh
Q 007185 380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAA 412 (614)
Q Consensus 380 V~CDgC~~~pI~G~RYKCsvC~DyDLC~~C~a~ 412 (614)
|.||+|.. .+.|.||||+.|+|||||+.||..
T Consensus 1 i~CdgC~~-~~~~~RykCl~C~d~DlC~~Cf~~ 32 (48)
T cd02343 1 ISCDGCDE-IAPWHRYRCLQCTDMDLCKTCFLG 32 (48)
T ss_pred CCCCCCCC-cCCCceEECCCCCCchhHHHHHhC
Confidence 57999995 689999999999999999999987
No 26
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=98.92 E-value=7.6e-10 Score=86.84 Aligned_cols=41 Identities=32% Similarity=0.585 Sum_probs=35.8
Q ss_pred ecCCCCCCCccccceecCCCCCcchhhhhhhh------CCCCcceEE
Q 007185 381 RCDGCGVHPITGPRFKSKVKDDYDLCSICFAA------MGSEADYIR 421 (614)
Q Consensus 381 ~CDgC~~~pI~G~RYKCsvC~DyDLC~~C~a~------~~~~H~~~k 421 (614)
.||+|....+.|.||+|.+|.|||||..||.. |.++|+|+.
T Consensus 2 ~Cd~C~~~~~~g~r~~C~~C~d~dLC~~Cf~~g~~~~~H~~~H~~~~ 48 (49)
T cd02335 2 HCDYCSKDITGTIRIKCAECPDFDLCLECFSAGAEIGKHRNDHNYRV 48 (49)
T ss_pred CCCCcCCCCCCCcEEECCCCCCcchhHHhhhCcCCCCCCCCCCCeEe
Confidence 69999977888899999999999999999987 456788764
No 27
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=98.91 E-value=8.9e-10 Score=85.17 Aligned_cols=42 Identities=40% Similarity=0.877 Sum_probs=35.8
Q ss_pred eecCCCCCCCccccceecCCCCCcchhhhhhhhC----CCCcceEEe
Q 007185 380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAM----GSEADYIRI 422 (614)
Q Consensus 380 V~CDgC~~~pI~G~RYKCsvC~DyDLC~~C~a~~----~~~H~~~ki 422 (614)
+.||+|+. +|.|.||+|..|.|||||..||... .+.|+|.+|
T Consensus 1 ~~C~~C~~-~i~g~r~~C~~C~d~dLC~~Cf~~~~~~H~~~H~~~~~ 46 (46)
T cd02249 1 YSCDGCLK-PIVGVRYHCLVCEDFDLCSSCYAKGKKGHPPDHSFTEI 46 (46)
T ss_pred CCCcCCCC-CCcCCEEECCCCCCCcCHHHHHCcCcCCCCCCCCEeEC
Confidence 36999995 9999999999999999999999873 336777654
No 28
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=98.88 E-value=1.2e-09 Score=83.88 Aligned_cols=35 Identities=51% Similarity=1.080 Sum_probs=33.2
Q ss_pred cCceecCCCCCCCccccceecCCCCCcchhhhhhhh
Q 007185 377 HKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAA 412 (614)
Q Consensus 377 H~GV~CDgC~~~pI~G~RYKCsvC~DyDLC~~C~a~ 412 (614)
|.++.||+|+. +|.|.||+|.+|+|||||..||..
T Consensus 2 ~~~~~C~~C~~-~i~g~ry~C~~C~d~dlC~~Cf~~ 36 (44)
T smart00291 2 HHSYSCDTCGK-PIVGVRYHCLVCPDYDLCQSCFAK 36 (44)
T ss_pred CCCcCCCCCCC-CCcCCEEECCCCCCccchHHHHhC
Confidence 67899999996 999999999999999999999987
No 29
>cd02337 ZZ_CBP Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.
Probab=98.81 E-value=1.9e-09 Score=82.18 Aligned_cols=40 Identities=25% Similarity=0.654 Sum_probs=35.2
Q ss_pred ecCCCCCCCccccceecCCCCCcchhhhhhhhCCCCcceEEe
Q 007185 381 RCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRI 422 (614)
Q Consensus 381 ~CDgC~~~pI~G~RYKCsvC~DyDLC~~C~a~~~~~H~~~ki 422 (614)
.||+|.. +.|.||+|.+|+|||||..||....+.|.+.++
T Consensus 2 ~C~~C~~--~~~~r~~C~~C~dfDLC~~C~~~~~H~H~~~~~ 41 (41)
T cd02337 2 TCNECKH--HVETRWHCTVCEDYDLCITCYNTKNHPHKMEKL 41 (41)
T ss_pred cCCCCCC--cCCCceECCCCcchhhHHHHhCCCCCCcccccC
Confidence 6999984 789999999999999999999987778887654
No 30
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=98.80 E-value=2.2e-09 Score=112.88 Aligned_cols=53 Identities=36% Similarity=0.621 Sum_probs=45.0
Q ss_pred cccCceecCCCCCCCccccceecCCCCCcchhhhhhhh------CCCCcceEEecCCcC
Q 007185 375 MFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAA------MGSEADYIRIDRPVH 427 (614)
Q Consensus 375 vvH~GV~CDgC~~~pI~G~RYKCsvC~DyDLC~~C~a~------~~~~H~~~ki~~Pv~ 427 (614)
..|.||.||||......|.||||..|.|||||..||.. |..+|++.-|-.++.
T Consensus 4 ~rHe~v~CdgC~k~~~t~rrYkCL~C~DyDlC~sCyen~~tt~~H~~dHPmqcil~~~d 62 (381)
T KOG1280|consen 4 SRHEGVSCDGCGKTAFTFRRYKCLRCSDYDLCFSCYENGATTPIHDEDHPMQCILSRVD 62 (381)
T ss_pred CCcCCceeccccccceeeeeeEeeeecchhHHHHHhhcCCCCcccCCCCceeEEeeccc
Confidence 36999999999988999999999999999999999987 456788765555443
No 31
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=98.47 E-value=8.2e-07 Score=77.87 Aligned_cols=74 Identities=32% Similarity=0.492 Sum_probs=58.6
Q ss_pred EEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCC--CcceEEEecCCCCEEEecCchhHHHHH----HccCc
Q 007185 7 IKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHD--SDLTLTYVDEDGDIVTLVDDDDLCDVM----RQRLK 80 (614)
Q Consensus 7 iKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~--~~~~lkY~DeDGD~VTl~Dd~DL~~a~----~q~l~ 80 (614)
+|..-|+ +=||++..+. .+.+|+..|.+=|+.... ..|.|+|.|.|||.|.|+-|+||.+|+ ....+
T Consensus 5 ~~~~~Gr-vhRf~~~~s~------~~~~L~~~I~~Rl~~d~~~~~~~~L~YlDDEgD~VllT~D~DL~e~v~iar~~g~~ 77 (86)
T cd06409 5 FKDPKGR-VHRFRLRPSE------SLEELRTLISQRLGDDDFETHLYALSYVDDEGDIVLITSDSDLVAAVLVARSAGLK 77 (86)
T ss_pred eeCCCCC-EEEEEecCCC------CHHHHHHHHHHHhCCccccCCcccEEEEcCCCCEEEEeccchHHHHHHHHHHcCCC
Confidence 5566555 5577776432 677899999999998653 799999999999999999999999976 44667
Q ss_pred eEEEEEE
Q 007185 81 FLRIDVH 87 (614)
Q Consensus 81 ~L~i~V~ 87 (614)
.++|.|.
T Consensus 78 ~v~L~v~ 84 (86)
T cd06409 78 KLDLHLH 84 (86)
T ss_pred EEEEEEe
Confidence 7777764
No 32
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=98.25 E-value=2.8e-07 Score=104.55 Aligned_cols=53 Identities=26% Similarity=0.539 Sum_probs=44.6
Q ss_pred CCcccCceecCCCCCCCccccceecCCCCCcchhhhhhhh------CCCCcceEEecCCc
Q 007185 373 MGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAA------MGSEADYIRIDRPV 426 (614)
Q Consensus 373 ~~vvH~GV~CDgC~~~pI~G~RYKCsvC~DyDLC~~C~a~------~~~~H~~~ki~~Pv 426 (614)
....|. .+|++|+..||+|+||+|.+|.|||+|..||.. |...|+|.-+-.|-
T Consensus 598 E~~kH~-~kCniCk~~pIvG~RyR~l~~fn~dlCq~CF~sgraak~hk~~~pM~Ey~~~t 656 (966)
T KOG4286|consen 598 ETAKHQ-AKCNICKECPIIGFRYRSLKHFNYDICQSCFFSGRAAKGHKMHYPMVEYCTPT 656 (966)
T ss_pred HHHHhh-hhcchhhhCccceeeeeehhhcChhHHhhHhhhcccccCCCCCCCceeeeCCC
Confidence 356776 899999999999999999999999999999986 45678886555554
No 33
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=98.13 E-value=8.8e-06 Score=70.61 Aligned_cols=72 Identities=28% Similarity=0.375 Sum_probs=60.3
Q ss_pred eEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCC-CEEEecCchhHHHHH-HccCceE
Q 007185 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDG-DIVTLVDDDDLCDVM-RQRLKFL 82 (614)
Q Consensus 5 lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDG-D~VTl~Dd~DL~~a~-~q~l~~L 82 (614)
.+|||.|.+ .|.|.+. .++.|.+|+.||.+=|+++ .+.+.|.|+||++ +.|-| .|+||.+|+ +-+-.+|
T Consensus 3 ~vvKV~f~~---tIaIrvp----~~~~y~~L~~ki~~kLkl~-~e~i~LsYkde~s~~~v~l-~d~dle~aws~~~~~~l 73 (80)
T cd06406 3 YVVKVHFKY---TVAIQVA----RGLSYATLLQKISSKLELP-AEHITLSYKSEASGEDVIL-SDTNMEDVWSQAKDGCL 73 (80)
T ss_pred eEEEEEEEE---EEEEEcC----CCCCHHHHHHHHHHHhCCC-chhcEEEeccCCCCCccCc-ChHHHHHHHHhhcCCeE
Confidence 799999998 5577764 4689999999999999997 6789999999985 78888 999999999 4466677
Q ss_pred EEE
Q 007185 83 RID 85 (614)
Q Consensus 83 ~i~ 85 (614)
++=
T Consensus 74 TLw 76 (80)
T cd06406 74 TLW 76 (80)
T ss_pred EEE
Confidence 653
No 34
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=97.80 E-value=2.6e-06 Score=90.14 Aligned_cols=48 Identities=27% Similarity=0.663 Sum_probs=41.0
Q ss_pred CCccccccCCCcCccCCcccCceecCCCCCCCccccceecCCCCCcchhhhhhhh
Q 007185 358 PRRGHFKRGFNRDALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAA 412 (614)
Q Consensus 358 p~~~~~~~~~~~~~~~~vvH~GV~CDgC~~~pI~G~RYKCsvC~DyDLC~~C~a~ 412 (614)
|++.++. ....+.|+ +.|+.|...+|.|.||+|..|.+|.+|..||..
T Consensus 226 pLmhrla------~v~nv~hp-v~cs~c~srs~~gfry~cq~C~nyqlcq~cfwr 273 (434)
T KOG4301|consen 226 PLMHRLA------TVENVFHP-VECSYCRSRSMMGFRYRCQQCHNYQLCQQCFWR 273 (434)
T ss_pred HHHHHHH------hhcccCCC-ccCcceecccccchhhhHhhcCCccccchhhcc
Confidence 3556665 22477888 999999999999999999999999999999987
No 35
>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes , such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domain of p40 represents a type I PB1 domain which interacts with the PB1 domain of oxidase activator p67 w
Probab=97.50 E-value=0.00024 Score=62.70 Aligned_cols=61 Identities=26% Similarity=0.446 Sum_probs=48.8
Q ss_pred CCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHc
Q 007185 12 GDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQ 77 (614)
Q Consensus 12 gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q 77 (614)
|-++|-+.++ +|=...-.|-+|...|++.|+ .+|+.|.|.|-+||+|-|-||+|+..++.+
T Consensus 12 ~~~~rdi~ve--e~l~~~P~~kdLl~lmr~~f~---~~dIaLNYrD~EGDLIRllddeDv~LMV~~ 72 (92)
T cd06399 12 ISTIRDIAVE--EDLSSTPLLKDLLELTRREFQ---REDIALNYRDAEGDLIRLLSDEDVALMVRQ 72 (92)
T ss_pred CccccceEee--cccccCccHHHHHHHHHHHhc---hhheeeeeecCCCCEEEEcchhhHHHHHHH
Confidence 4456766666 222344567899999999998 459999999999999999999999997743
No 36
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.48 E-value=4.7e-05 Score=82.87 Aligned_cols=45 Identities=33% Similarity=0.608 Sum_probs=39.0
Q ss_pred ceecCCCCCCCccccc-eecCCCCCcchhhhhhhh------CCCCcceEEecC
Q 007185 379 GVRCDGCGVHPITGPR-FKSKVKDDYDLCSICFAA------MGSEADYIRIDR 424 (614)
Q Consensus 379 GV~CDgC~~~pI~G~R-YKCsvC~DyDLC~~C~a~------~~~~H~~~ki~~ 424 (614)
.+.||+|. ..|.|.. .||++|+|||||-.||.. |.+.|+|-.+++
T Consensus 14 ky~C~~C~-~dit~~i~ikCaeCp~fdLCl~CFs~GaE~~~H~~~H~Yrim~~ 65 (438)
T KOG0457|consen 14 KYNCDYCS-LDITGLIRIKCAECPDFDLCLQCFSVGAETGKHQNDHPYRIMDT 65 (438)
T ss_pred CCCCccHh-HHhccceEEEeecCCCcchhHHHHhcccccCCCCCCCCceeecC
Confidence 36899999 5788877 999999999999999987 678999976666
No 37
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=97.30 E-value=0.0012 Score=59.22 Aligned_cols=61 Identities=30% Similarity=0.530 Sum_probs=49.1
Q ss_pred EEee-CCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEe--cCCCC-EEEecCchhHHHHHH
Q 007185 8 KVKY-GDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYV--DEDGD-IVTLVDDDDLCDVMR 76 (614)
Q Consensus 8 Kvk~-gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~--DeDGD-~VTl~Dd~DL~~a~~ 76 (614)
|++| |++-|-+.+.- +..+.+|+.++.+.|+...+ ++|||. +||-| +|+|.+|+||..+|.
T Consensus 16 ~l~Y~GG~tr~i~V~r------~~s~~el~~kl~~~~~~~~~--~~lky~Lp~edld~Lisv~~DeDl~~M~~ 80 (97)
T cd06410 16 QLRYVGGETRIVSVDR------SISFKELVSKLSELFGAGVV--VTLKYQLPDEDLDALISVSNDEDLKNMME 80 (97)
T ss_pred CEEEcCCceEEEEEcC------CCCHHHHHHHHHHHhCCCCc--eEEEEEcCCCCcceeEEecCcHHHHHHHH
Confidence 3444 55666666662 26888999999999997533 999998 99999 999999999999773
No 38
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=96.88 E-value=0.00069 Score=52.99 Aligned_cols=32 Identities=31% Similarity=0.768 Sum_probs=28.9
Q ss_pred eecCCCCCCCccccceecCCCCCcchhhhhhhh
Q 007185 380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAA 412 (614)
Q Consensus 380 V~CDgC~~~pI~G~RYKCsvC~DyDLC~~C~a~ 412 (614)
+.|+.|+ ..+...||+|+.+.+||||..||.+
T Consensus 1 y~C~~Cg-~D~t~vryh~~~~~~~dLC~~CF~~ 32 (45)
T cd02336 1 YHCFTCG-NDCTRVRYHNLKAKKYDLCPSCYQE 32 (45)
T ss_pred CcccCCC-CccCceEEEecCCCccccChHHHhC
Confidence 3699999 4678899999999999999999987
No 39
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=96.82 E-value=0.0028 Score=55.50 Aligned_cols=62 Identities=23% Similarity=0.372 Sum_probs=48.2
Q ss_pred eEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHH
Q 007185 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCD 73 (614)
Q Consensus 5 lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~ 73 (614)
+-||+..|+++ --.++ -...|+|.+|...|.+++. ....--.-|-|||||-||+-.|+++..
T Consensus 3 IRIk~p~gg~v---Dw~V~--~~~~L~F~DvL~~I~~vlp--~aT~tAFeYEDE~gDRITVRSDeEm~A 64 (91)
T cd06395 3 IRIKIPNGGAV---DWTVQ--SGPQLLFRDVLDVIGQVLP--EATTTAFEYEDEDGDRITVRSDEEMKA 64 (91)
T ss_pred EEEeCCCCCcc---ccccc--CcccccHHHHHHHHHHhcc--cccccceeeccccCCeeEecchHHHHH
Confidence 45788888877 33332 2467999999999999986 333444589999999999999999986
No 40
>KOG3606 consensus Cell polarity protein PAR6 [Signal transduction mechanisms]
Probab=96.78 E-value=0.0017 Score=67.81 Aligned_cols=84 Identities=24% Similarity=0.469 Sum_probs=69.7
Q ss_pred ceeEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceE
Q 007185 3 STMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFL 82 (614)
Q Consensus 3 ~~lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L 82 (614)
+++.+|-||+-.-|||++.-..-+ .|.+....++.+-++ ++.+|+|-|.|--||+.-|..|+-|..|+..---.|
T Consensus 17 ~~veVKSKFdaEfRRfsl~r~~~~----~f~~F~~Lv~~~H~i-~nvdvllgY~d~hgDLLPinNDDn~~ka~~sa~PlL 91 (358)
T KOG3606|consen 17 STVEVKSKFDAEFRRFSLPRHSAS----SFDEFYSLVEHLHHI-PNVDVLLGYADTHGDLLPINNDDNLHKALSSARPLL 91 (358)
T ss_pred ceEEeeccccchhheecccccCcc----cHHHHHHHHHHHhcC-CCceEEEEEecCCCceecccCchhHHHHhhccCchh
Confidence 478999999999999999966432 566788888888888 599999999999999999999999999995543458
Q ss_pred EEEEEecCC
Q 007185 83 RIDVHLNND 91 (614)
Q Consensus 83 ~i~V~l~~~ 91 (614)
||.||=..+
T Consensus 92 R~~iQkr~e 100 (358)
T KOG3606|consen 92 RLLIQKREE 100 (358)
T ss_pred hhhhhhhhh
Confidence 888875533
No 41
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=96.37 E-value=0.0013 Score=69.74 Aligned_cols=46 Identities=24% Similarity=0.372 Sum_probs=38.1
Q ss_pred ceecCCCCCCCccccceecCCCCCcchhhhhhhh------CCCCcceEEecC
Q 007185 379 GVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAA------MGSEADYIRIDR 424 (614)
Q Consensus 379 GV~CDgC~~~pI~G~RYKCsvC~DyDLC~~C~a~------~~~~H~~~ki~~ 424 (614)
-+.||.|...-..-++-+|..|++||||-.||.+ |++.|.|-.|.+
T Consensus 5 k~hCdvC~~d~T~~~~i~C~eC~~~DLC~pCF~~g~~tg~H~pyH~YRiiet 56 (432)
T COG5114 5 KIHCDVCFLDMTDLTFIKCNECPAVDLCLPCFVNGIETGVHSPYHGYRIIET 56 (432)
T ss_pred eeeehHHHHhhhcceeeeeecccccceehhhhhccccccccCCCCCeeEeec
Confidence 3679999865556688999999999999999987 678888866655
No 42
>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=95.68 E-value=0.035 Score=60.17 Aligned_cols=79 Identities=22% Similarity=0.342 Sum_probs=61.6
Q ss_pred eeEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHH----HccC
Q 007185 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVM----RQRL 79 (614)
Q Consensus 4 ~lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~----~q~l 79 (614)
.+-+|+.|++++--..+. ..+.+.+|-..+...-++....+|++||.|||||-+|+..--+|.+|. ..+-
T Consensus 15 ~vrlka~y~g~i~i~~~~------p~~~~e~~~~~vrd~c~~h~~q~~t~kwideegdp~tv~sqmeleea~r~~~~~~d 88 (593)
T KOG0695|consen 15 RVRLKAHYGGDIFITSVD------PATTFEELCEEVRDMCRLHQQQPLTLKWIDEEGDPCTVSSQMELEEAFRLARQCRD 88 (593)
T ss_pred cEEEEEeecCcEEEEecc------CcccHHHHHHHHHHHHHHhhcCCceeEeecCCCCcceechhhhHHHHHHHHHhccc
Confidence 477999999998433332 346777888888777777778899999999999999999999998864 3355
Q ss_pred ceEEEEEEe
Q 007185 80 KFLRIDVHL 88 (614)
Q Consensus 80 ~~L~i~V~l 88 (614)
.-|-|-|++
T Consensus 89 ~el~ihvf~ 97 (593)
T KOG0695|consen 89 EELIIHVFP 97 (593)
T ss_pred cceEEEEcc
Confidence 667777764
No 43
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=95.15 E-value=0.1 Score=45.48 Aligned_cols=55 Identities=16% Similarity=0.158 Sum_probs=44.9
Q ss_pred ccHHHHHHHHHHhcCCCCCCcceEEEecCCCC--EEEecCchhHHHHH-HccCceEEEE
Q 007185 30 LDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGD--IVTLVDDDDLCDVM-RQRLKFLRID 85 (614)
Q Consensus 30 l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD--~VTl~Dd~DL~~a~-~q~l~~L~i~ 85 (614)
+++++|+.||.+.|++.++. ..|.|+++|.| +|.|..++|+.+|- .-+-.+|++-
T Consensus 17 ~~y~~L~~~ls~kL~l~~~~-~~LSY~~~~~~~~~v~l~~e~~me~aW~~v~~~~ltLw 74 (78)
T cd06411 17 ADVSSLRALLSQALPQQAQR-GQLSYRAPGEDGHWVPISGEESLQRAWQDVADGPRGLQ 74 (78)
T ss_pred CCHHHHHHHHHHHhcCChhh-cEEEecCCCCCccEeecCcchHHHHHHHhccCCceEEE
Confidence 67789999999999997665 99999999885 77787799999987 3455666553
No 44
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=95.12 E-value=0.081 Score=44.82 Aligned_cols=68 Identities=16% Similarity=0.240 Sum_probs=46.9
Q ss_pred CCceeCCCCcEEEEEEEEeccCCCCCCCcEEEEecCCCCCCCCceeeeccCCCCCCCCEEEEEEEEecCCCCceEE
Q 007185 489 DGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYI 564 (614)
Q Consensus 489 DGT~V~Pgt~FtKtWrLrN~Gt~~WP~G~~L~fvgGd~m~~~~sv~~~ipv~~v~PGeevdVSV~L~AP~~pG~yi 564 (614)
.-..+.+|+.++-+|+|+|.|.... .++.+.+..++... . ...+..++||++..+++.+.++ .+|.|.
T Consensus 11 ~~~~~~~g~~~~i~~~V~N~G~~~~-~~~~v~~~~~~~~~--~----~~~i~~L~~g~~~~v~~~~~~~-~~G~~~ 78 (101)
T PF07705_consen 11 SPSNVVPGEPVTITVTVKNNGTADA-ENVTVRLYLDGNSV--S----TVTIPSLAPGESETVTFTWTPP-SPGSYT 78 (101)
T ss_dssp C-SEEETTSEEEEEEEEEE-SSS-B-EEEEEEEEETTEEE--E----EEEESEB-TTEEEEEEEEEE-S-S-CEEE
T ss_pred CCCcccCCCEEEEEEEEEECCCCCC-CCEEEEEEECCcee--c----cEEECCcCCCcEEEEEEEEEeC-CCCeEE
Confidence 4457888999999999999999985 56777655443222 1 2223578999999999999987 999887
No 45
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=93.07 E-value=1.2 Score=38.70 Aligned_cols=77 Identities=13% Similarity=0.247 Sum_probs=53.1
Q ss_pred eeCCCCcEEEEEEEEeccCCCCCCCcEEEEecCCCCCCCCceeeeccCCCCCCCCEEEEEEEEecCCCCceEEEEEEEEC
Q 007185 492 MMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSS 571 (614)
Q Consensus 492 ~V~Pgt~FtKtWrLrN~Gt~~WP~G~~L~fvgGd~m~~~~sv~~~ipv~~v~PGeevdVSV~L~AP~~pG~yiSyWRL~t 571 (614)
.+..|+.-.++=+|+|.|... +++.+......... ..+...-..++||+++++.|.|.++...|.|...-.+..
T Consensus 15 ~v~~g~~~~~~v~l~N~s~~p----~~f~v~~~~~~~~~--~~v~~~~g~l~PG~~~~~~V~~~~~~~~g~~~~~l~i~~ 88 (102)
T PF14874_consen 15 NVFVGQTYSRTVTLTNTSSIP----ARFRVRQPESLSSF--FSVEPPSGFLAPGESVELEVTFSPTKPLGDYEGSLVITT 88 (102)
T ss_pred EEccCCEEEEEEEEEECCCCC----EEEEEEeCCcCCCC--EEEECCCCEECCCCEEEEEEEEEeCCCCceEEEEEEEEE
Confidence 466899999999999999874 33333322211111 112222234899999999999998888999998888876
Q ss_pred CCC
Q 007185 572 PSG 574 (614)
Q Consensus 572 pdG 574 (614)
..|
T Consensus 89 e~~ 91 (102)
T PF14874_consen 89 EGG 91 (102)
T ss_pred CCe
Confidence 443
No 46
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=91.95 E-value=0.47 Score=41.45 Aligned_cols=58 Identities=24% Similarity=0.391 Sum_probs=44.9
Q ss_pred EEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHH
Q 007185 6 VIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVM 75 (614)
Q Consensus 6 viKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~ 75 (614)
-+||+-.+--+|+-|-+. ++.+|+.|.+..|++.. ..+.| +.+||| |++||+|+...+
T Consensus 4 p~kv~~~~r~~k~Gv~A~-------sL~eL~~K~~~~l~~~~-~~~~l-vL~eDG---T~VddEeyF~tL 61 (78)
T PF02017_consen 4 PFKVRNHDRSVKKGVAAS-------SLEELLEKACDKLQLPE-EPVRL-VLEEDG---TEVDDEEYFQTL 61 (78)
T ss_dssp EEEEEETTSSCEEEEEES-------SHHHHHHHHHHHHT-SS-STCEE-EETTTT---CBESSCHHHCCS
T ss_pred cEEEecCCCCceEeEEcC-------CHHHHHHHHHHHhCCCC-cCcEE-EEeCCC---cEEccHHHHhhC
Confidence 368888887888887754 77889999999999964 66666 889999 666888876544
No 47
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=91.81 E-value=1.4 Score=36.98 Aligned_cols=73 Identities=19% Similarity=0.292 Sum_probs=42.3
Q ss_pred eCCCCcEEEEEEEEeccCCCCCCCcEEEEecCCCCCCCCceeeeccCCCCCCCCEEEEEEEEecCCC--CceEEEEEEE
Q 007185 493 MAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPEL--PGRYISYWRM 569 (614)
Q Consensus 493 V~Pgt~FtKtWrLrN~Gt~~WP~G~~L~fvgGd~m~~~~sv~~~ipv~~v~PGeevdVSV~L~AP~~--pG~yiSyWRL 569 (614)
+.||+.++-+=+|+|.|...- .+..|..-.-+-.. ....+..++ .|+||+++.+++.++.|.. +|.|.--.++
T Consensus 1 v~~G~~~~~~~tv~N~g~~~~-~~v~~~l~~P~GW~-~~~~~~~~~--~l~pG~s~~~~~~V~vp~~a~~G~y~v~~~a 75 (78)
T PF10633_consen 1 VTPGETVTVTLTVTNTGTAPL-TNVSLSLSLPEGWT-VSASPASVP--SLPPGESVTVTFTVTVPADAAPGTYTVTVTA 75 (78)
T ss_dssp --TTEEEEEEEEEE--SSS-B-SS-EEEEE--TTSE----EEEEE----B-TTSEEEEEEEEEE-TT--SEEEEEEEEE
T ss_pred CCCCCEEEEEEEEEECCCCce-eeEEEEEeCCCCcc-ccCCccccc--cCCCCCEEEEEEEEECCCCCCCceEEEEEEE
Confidence 468999999999999998876 46666554322122 111223333 6899999999999999955 8998755443
No 48
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=91.17 E-value=0.12 Score=36.73 Aligned_cols=28 Identities=43% Similarity=0.920 Sum_probs=13.3
Q ss_pred ecCCCCCCCccc-cceecCCCCCcchhhhhh
Q 007185 381 RCDGCGVHPITG-PRFKSKVKDDYDLCSICF 410 (614)
Q Consensus 381 ~CDgC~~~pI~G-~RYKCsvC~DyDLC~~C~ 410 (614)
.|+.|+ .++.| ..|.|..| ||+|...|.
T Consensus 2 ~C~~C~-~~~~~~~~Y~C~~C-df~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACG-KPIDGGWFYRCSEC-DFDLHEECA 30 (30)
T ss_dssp --TTTS-----S--EEE-TTT------HHHH
T ss_pred cCCcCC-CcCCCCceEECccC-CCccChhcC
Confidence 699999 57887 99999999 799988873
No 49
>PF14646 MYCBPAP: MYCBP-associated protein family
Probab=90.10 E-value=1.5 Score=48.38 Aligned_cols=86 Identities=15% Similarity=0.213 Sum_probs=54.9
Q ss_pred CCCCcEEEEEE-EEeccCCCCCCCcEEEEecCCCCC------CC--CceeeeccCCCCCCCCEEEEEEEEecCCCCceEE
Q 007185 494 APSTPFTKIWR-MRNTGNLAWPRGSQLVWIGGDKFS------DG--VSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYI 564 (614)
Q Consensus 494 ~Pgt~FtKtWr-LrN~Gt~~WP~G~~L~fvgGd~m~------~~--~sv~~~ipv~~v~PGeevdVSV~L~AP~~pG~yi 564 (614)
.||+.-.|.=. |.|+|+++ .+..|.-.+... .. ...-+.---..+.|||+..|.|.|+ |..+|.|.
T Consensus 244 ~p~e~~~~~v~~l~N~Gt~~----I~y~W~~~~~~~~~~~~~~~~~~~F~Fd~~~gvilPGe~~~~~~~F~-s~~~Gif~ 318 (426)
T PF14646_consen 244 HPGERVSKEVVRLENNGTTA----IYYSWRRVPFFKNFGSLFRAQDQRFYFDTSSGVILPGETRNFPFMFK-SRKVGIFK 318 (426)
T ss_pred ccCceeeEEEEEEecCCceE----EEEEEEecccccccchhccccCCeEEEeCCCCEECCCceEEEEEEEe-CCCceEEE
Confidence 57888888888 99999975 233333333211 00 0001111112478999999999998 79999999
Q ss_pred EEEEEECCCCCccC-CeEEEEE
Q 007185 565 SYWRMSSPSGVKFG-QRVWVLI 585 (614)
Q Consensus 565 SyWRL~tpdG~~FG-~~LWv~I 585 (614)
..|+|.+ .=..|| ..|-+.+
T Consensus 319 E~W~L~t-~P~l~~~~~l~v~L 339 (426)
T PF14646_consen 319 ERWELRT-FPPLFGGASLTVRL 339 (426)
T ss_pred EEEEEEE-eccccCCCceEEEE
Confidence 9999998 333344 5444443
No 50
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=88.18 E-value=1.8 Score=38.15 Aligned_cols=59 Identities=22% Similarity=0.281 Sum_probs=44.6
Q ss_pred EEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHH
Q 007185 7 IKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVM 75 (614)
Q Consensus 7 iKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~ 75 (614)
+||+-.+--+|+-|-.+ ++.+|+.|.+..|++.......-=|.+||| |.+||+|....|
T Consensus 5 fkV~~~~r~~k~GV~A~-------sL~eL~~K~~~~l~l~~~~~~~~lvL~eDG---T~VddEeyF~tL 63 (80)
T cd06536 5 CVVCNVSRQKQHGVAAS-------SLEELRIKACESLGFDSSSAPITLVLAEDG---TIVEDEDYFLCL 63 (80)
T ss_pred eEEecCCCCeeEeEEcC-------CHHHHHHHHHHHhCCCCCCCceEEEEecCC---cEEccHHHHhhC
Confidence 67777777777777653 677899999999999744333444899999 677888887666
No 51
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=86.43 E-value=1 Score=39.11 Aligned_cols=51 Identities=24% Similarity=0.490 Sum_probs=31.3
Q ss_pred CCceeEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCC
Q 007185 1 MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDED 59 (614)
Q Consensus 1 m~~~lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeD 59 (614)
|.+.++|.|+=-|-..|+.+.-+ . ++.+|..+|++.|+++.+ .+.| |+|.+
T Consensus 1 ~~~~milRvrS~dG~~Rie~~~~---~---t~~~L~~kI~~~l~~~~~-~~~L-~~~~~ 51 (80)
T PF11543_consen 1 MASSMILRVRSKDGMKRIEVSPS---S---TLSDLKEKISEQLSIPDS-SQSL-SKDRN 51 (80)
T ss_dssp -----EEEEE-SSEEEEEEE-TT---S---BHHHHHHHHHHHS---TT-T----BSSGG
T ss_pred CCccEEEEEECCCCCEEEEcCCc---c---cHHHHHHHHHHHcCCCCc-ceEE-EecCC
Confidence 88999999999999999998833 2 788999999999998644 6766 66653
No 52
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=85.36 E-value=2.9 Score=36.62 Aligned_cols=57 Identities=26% Similarity=0.414 Sum_probs=44.0
Q ss_pred EEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHH
Q 007185 7 IKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVM 75 (614)
Q Consensus 7 iKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~ 75 (614)
+||+-.+.-+|+-|-.+ ++.+|+.|.++.|+++ +.++. =|.+||| |.+||+|....|
T Consensus 5 ~kV~~~~r~~k~GV~A~-------sL~eL~~K~~~~l~l~-~~~~~-lvL~eDG---TeVddEeYF~tL 61 (78)
T cd01615 5 FKVCDSDRSRKKGVAAS-------SLEELLSKACEKLKLP-SAPVT-LVLEEDG---TEVDDEEYFQTL 61 (78)
T ss_pred EEEecCCCCeeEEEEcC-------CHHHHHHHHHHHcCCC-CCCeE-EEEeCCC---cEEccHHHHhcC
Confidence 67777777777777753 6778999999999996 44444 4899999 667888887665
No 53
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=85.33 E-value=2 Score=37.00 Aligned_cols=43 Identities=30% Similarity=0.543 Sum_probs=33.4
Q ss_pred cccHHHHHHHHHHhcCCCCCCcceEEEe-cCCCCEEEecCchhHH
Q 007185 29 DLDIDGLRAKIKSLFNFPHDSDLTLTYV-DEDGDIVTLVDDDDLC 72 (614)
Q Consensus 29 ~l~~~~L~~~i~~~F~l~~~~~~~lkY~-DeDGD~VTl~Dd~DL~ 72 (614)
..++.+|+.++..+|+++ -..+.|.|. |++|..+...||++-.
T Consensus 23 ~~Tv~eLK~kl~~~~Gi~-~~~m~L~l~~~~~~~~~~~~~dd~~~ 66 (87)
T PF14560_consen 23 SITVSELKQKLEKLTGIP-PSDMRLQLKSDKDDSKIEELDDDDAT 66 (87)
T ss_dssp TSBHHHHHHHHHHHHTS--TTTEEEEEE-TSSSSEEEESSGSSSB
T ss_pred CCCHHHHHHHHHHHhCCC-cccEEEEEEecCCCccccccCCCccE
Confidence 468889999999999996 558899999 7778877776654433
No 54
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=85.11 E-value=3 Score=36.29 Aligned_cols=57 Identities=26% Similarity=0.450 Sum_probs=42.4
Q ss_pred EEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHH
Q 007185 7 IKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVM 75 (614)
Q Consensus 7 iKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~ 75 (614)
+||+-.+--+|+-|-.+ ++.+|+.|.+..|+++.. .+. =|.+||| |.+||+|....+
T Consensus 3 ~kV~~~~r~~k~GV~A~-------sL~eL~~K~~~~l~l~~~-~~~-l~L~eDG---T~VddEeyF~tL 59 (74)
T smart00266 3 FKVRDHDRNVRKGVAAS-------SLEELLSKVCDKLALPDS-PVT-LVLEEDG---TIVDDEEYFQTL 59 (74)
T ss_pred EEEecCCCCeeEEEEcC-------CHHHHHHHHHHHhCCCCC-CcE-EEEecCC---cEEccHHHHhcC
Confidence 56766666666666643 677899999999999643 444 4899999 677888887655
No 55
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=84.39 E-value=4.5 Score=35.02 Aligned_cols=72 Identities=24% Similarity=0.289 Sum_probs=46.3
Q ss_pred eeEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEE-ecCchhHHHHH-HccCce
Q 007185 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVT-LVDDDDLCDVM-RQRLKF 81 (614)
Q Consensus 4 ~lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VT-l~Dd~DL~~a~-~q~l~~ 81 (614)
++.|++.. ..|.+...+. ..++..+|+.|+.++|+.+++ .+.|-|.|.+|..|. |.||+..+.+. .+....
T Consensus 3 ~v~i~~~~--~~~~~ekr~~----~~~Tv~~lK~kl~~~~G~~~~-~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~ 75 (84)
T cd01789 3 TVNITSSA--DSFSFEKKYS----RGLTIAELKKKLELVVGTPAS-SMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCR 75 (84)
T ss_pred EEEEEeCC--CceeeeEecC----CCCcHHHHHHHHHHHHCCCcc-ceEEEEEcCCCCeEeecCCCccEeeeccCCCCCE
Confidence 35667666 2666665553 347888999999999999655 688887777776655 44444433333 343433
Q ss_pred E
Q 007185 82 L 82 (614)
Q Consensus 82 L 82 (614)
+
T Consensus 76 I 76 (84)
T cd01789 76 I 76 (84)
T ss_pred E
Confidence 3
No 56
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=83.43 E-value=0.74 Score=32.87 Aligned_cols=27 Identities=26% Similarity=0.486 Sum_probs=23.1
Q ss_pred ecCCCCCCCcccc-ceecCCCCCcchhhhh
Q 007185 381 RCDGCGVHPITGP-RFKSKVKDDYDLCSIC 409 (614)
Q Consensus 381 ~CDgC~~~pI~G~-RYKCsvC~DyDLC~~C 409 (614)
.|+.|+ ..+.|. .|+|..|. |++...|
T Consensus 2 ~C~~C~-~~~~~~~~Y~C~~c~-f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCR-RKIDGFYFYHCSECC-FTLHVRC 29 (30)
T ss_pred CCCCCC-CCcCCCEeEEeCCCC-CeEcCcc
Confidence 699998 678999 99999997 8887666
No 57
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=81.99 E-value=5.1 Score=32.47 Aligned_cols=58 Identities=14% Similarity=0.196 Sum_probs=39.6
Q ss_pred eEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHH
Q 007185 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDV 74 (614)
Q Consensus 5 lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a 74 (614)
+.|+||+++.. +.+.+.. +.+.++|+.+|++.++++ -..+.|.|.. .. |.|+.-|.++
T Consensus 1 i~i~vk~~g~~--~~i~v~~----~~tv~~lK~~i~~~~gi~-~~~q~L~~~g---~~--l~d~~~L~~~ 58 (71)
T cd01812 1 IRVRVKHGGES--HDLSISS----QATFGDLKKMLAPVTGVE-PRDQKLIFKG---KE--RDDAETLDMS 58 (71)
T ss_pred CEEEEEECCEE--EEEEECC----CCcHHHHHHHHHHhhCCC-hHHeEEeeCC---cc--cCccCcHHHc
Confidence 35788898654 4555543 347889999999999986 4578888873 32 3455555553
No 58
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=78.36 E-value=1 Score=48.55 Aligned_cols=44 Identities=20% Similarity=0.385 Sum_probs=35.7
Q ss_pred ceecCCCCCCCccccceecCCCCCcchhhhhhhhCCCCcceEEecC
Q 007185 379 GVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDR 424 (614)
Q Consensus 379 GV~CDgC~~~pI~G~RYKCsvC~DyDLC~~C~a~~~~~H~~~ki~~ 424 (614)
...|..|.. .. ..+|.|.+|++||.|..|+.+..+.|.|..+..
T Consensus 169 ~~~c~~c~~-~~-~~~~~c~~~~d~d~~~~~~~k~~h~h~~~~~~~ 212 (319)
T KOG1778|consen 169 AYTCPICKL-EV-LTAWHCEVCPDYDRCRACEEKPLHPHLYEAMES 212 (319)
T ss_pred eeecCcccc-cc-ccccccccCCchhhhhcccCCCCCCcchhcccc
Confidence 478999984 34 889999999999999999998766777765433
No 59
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=71.67 E-value=9.5 Score=29.69 Aligned_cols=57 Identities=28% Similarity=0.343 Sum_probs=40.0
Q ss_pred EEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHH
Q 007185 6 VIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDV 74 (614)
Q Consensus 6 viKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a 74 (614)
.|.|+..+ +.+.+.+.. +.+..+|+.+|++.++++ ...+.|.|.. - -|.|+..|.++
T Consensus 2 ~i~vk~~~--~~~~~~v~~----~~tv~~lk~~i~~~~~~~-~~~~~L~~~g---~--~L~d~~tL~~~ 58 (64)
T smart00213 2 ELTVKTLD--GTITLEVKP----SDTVSELKEKIAELTGIP-VEQQRLIYKG---K--VLEDDRTLADY 58 (64)
T ss_pred EEEEEECC--ceEEEEECC----CCcHHHHHHHHHHHHCCC-HHHEEEEECC---E--ECCCCCCHHHc
Confidence 36667766 566666653 348899999999999996 4478898863 2 26666666553
No 60
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=69.95 E-value=13 Score=32.86 Aligned_cols=56 Identities=23% Similarity=0.338 Sum_probs=41.8
Q ss_pred EEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHH
Q 007185 7 IKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVM 75 (614)
Q Consensus 7 iKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~ 75 (614)
+||+-.+--+|+-|-.+ ++.+|+.|.++.|++. . ..-=|.+||| |.+||+|....+
T Consensus 5 ~kV~~~~rs~k~GV~A~-------sL~eL~~K~~~~l~l~-~--~~~lvL~eDG---T~Vd~EeyF~tL 60 (79)
T cd06538 5 FRVSNADRSLRKGIMAD-------SLEDLLNKVLDALLLD-C--ISSLVLDEDG---TGVDTEEFFQAL 60 (79)
T ss_pred EEEecCCCceeEeEEcC-------CHHHHHHHHHHHcCCC-C--ccEEEEecCC---cEEccHHHHhhC
Confidence 56766666666666643 6778999999999994 2 2556899999 667888887666
No 61
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=69.29 E-value=2.1 Score=50.58 Aligned_cols=59 Identities=31% Similarity=0.516 Sum_probs=47.8
Q ss_pred EEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHH
Q 007185 6 VIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCD 73 (614)
Q Consensus 6 viKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~ 73 (614)
.+|.-||+++|+=-+.++ -++..||.-|-. | ++-..+.|||.|-+||.|||.+.+.|..
T Consensus 291 ~~~~v~~~~i~laql~~~------~~~~~lR~ii~~-~--~~~~~v~ik~~~~~~~~vtit~~a~l~l 349 (748)
T KOG4151|consen 291 TLKLVYGDDIRLAQLPLN------CTVKILREIIHS-F--PSLRAVLIKYRDTEGDLVTITTTAELRL 349 (748)
T ss_pred hhhhhhccHHHHHhcchh------hchHHHHHHHhc-c--cchhhheeeeccCCcceeeeeehhhhhh
Confidence 467788999988777743 355668877777 4 4666999999999999999999999996
No 62
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=69.13 E-value=20 Score=29.19 Aligned_cols=71 Identities=24% Similarity=0.350 Sum_probs=47.7
Q ss_pred eEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceEEE
Q 007185 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRI 84 (614)
Q Consensus 5 lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L~i 84 (614)
+.||...|. .+.+.++. +.+.++|+.+|++.+++++ ....|.|. |.. |.|+..|.++=.+.-..|.|
T Consensus 3 i~v~~~~g~---~~~~~v~~----~~tV~~lK~~i~~~~g~~~-~~q~L~~~---g~~--L~d~~~L~~~~i~~~~~i~l 69 (76)
T cd01803 3 IFVKTLTGK---TITLEVEP----SDTIENVKAKIQDKEGIPP-DQQRLIFA---GKQ--LEDGRTLSDYNIQKESTLHL 69 (76)
T ss_pred EEEEcCCCC---EEEEEECC----cCcHHHHHHHHHHHhCCCH-HHeEEEEC---CEE--CCCCCcHHHcCCCCCCEEEE
Confidence 556665554 34566643 3578899999999999854 57888884 433 66777777754455566766
Q ss_pred EEEe
Q 007185 85 DVHL 88 (614)
Q Consensus 85 ~V~l 88 (614)
.+.+
T Consensus 70 ~~~~ 73 (76)
T cd01803 70 VLRL 73 (76)
T ss_pred EEEc
Confidence 6653
No 63
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=67.04 E-value=19 Score=29.94 Aligned_cols=56 Identities=21% Similarity=0.261 Sum_probs=46.0
Q ss_pred cceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEE-ecCCCCEEEecCchhHHHHH
Q 007185 14 TLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTY-VDEDGDIVTLVDDDDLCDVM 75 (614)
Q Consensus 14 dlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY-~DeDGD~VTl~Dd~DL~~a~ 75 (614)
..+.|.+..+ -+-.+|..+|++-++|....-|.|.| .|.+|...-|..+.-|.+.+
T Consensus 7 ~~~~~~v~~~------~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~ 63 (80)
T PF09379_consen 7 TTKTFEVDPK------TTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQL 63 (80)
T ss_dssp EEEEEEEETT------SBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGST
T ss_pred CcEEEEEcCC------CcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHc
Confidence 3466666643 25678999999999999999999999 89999999999999888855
No 64
>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []. The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.
Probab=64.15 E-value=2.2 Score=42.91 Aligned_cols=73 Identities=22% Similarity=0.357 Sum_probs=0.0
Q ss_pred eEEEEeeCC--cceeeeeecCCCCCccccHHHHHHHHHHhc---CCC----------------CCCcceEEEecCCCCEE
Q 007185 5 MVIKVKYGD--TLRRFNARVDENEKLDLDIDGLRAKIKSLF---NFP----------------HDSDLTLTYVDEDGDIV 63 (614)
Q Consensus 5 lviKvk~gd--dlRRf~~~~~~n~~~~l~~~~L~~~i~~~F---~l~----------------~~~~~~lkY~DeDGD~V 63 (614)
.-+||.--+ ..|++.|..-. .|.+|...+..+| .+. ...+++|+|.|.|||+.
T Consensus 110 ~~vKV~mdG~~igRkVDL~~~~------sY~~L~~~L~~MF~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~Y~D~egd~m 183 (215)
T PF02309_consen 110 SYVKVNMDGVPIGRKVDLSAYS------SYEELSSALEKMFSCFSIEQCGSHGLNESGLLDLLNGSEYVLVYEDKEGDWM 183 (215)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeEEEecCcccceecCHHHhh------CHHHHHHHHHHhcCCCCccccccccccchhhccccCCcceeEEEECCCCCEE
Confidence 446666543 45777766332 4557888888888 332 34588999999999986
Q ss_pred EecCchhHHHHHHccCceEEEE
Q 007185 64 TLVDDDDLCDVMRQRLKFLRID 85 (614)
Q Consensus 64 Tl~Dd~DL~~a~~q~l~~L~i~ 85 (614)
-+-|+ =....+ .-.++|||.
T Consensus 184 lvGD~-PW~~F~-~~vkRl~I~ 203 (215)
T PF02309_consen 184 LVGDV-PWEEFV-KSVKRLRIM 203 (215)
T ss_dssp ----------------------
T ss_pred EecCC-CHHHHH-HHhhccEEe
Confidence 55554 344333 224556664
No 65
>cd06535 CIDE_N_CAD CIDE_N domain of CAD nuclease. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and the release of active DFF40/CAD nuclease.
Probab=63.43 E-value=24 Score=31.09 Aligned_cols=56 Identities=18% Similarity=0.334 Sum_probs=39.7
Q ss_pred EEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHH
Q 007185 7 IKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVM 75 (614)
Q Consensus 7 iKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~ 75 (614)
+||+--+--+|+-|-.+ ++.+|+.|.++.|+++.. . +-=|.+|||=.|| +|+...+
T Consensus 5 ~kV~~~~rs~k~GV~A~-------sL~eL~~K~~~~l~l~~~-~-~~l~L~eDGTeVt----EeyF~tL 60 (77)
T cd06535 5 VKIRSLNSAQKYGVAAK-------NLKELLRKGCRLLQLPCA-G-SRLCLYEDGTEVT----EEYFPTL 60 (77)
T ss_pred eEEecCCCCeeEeEEcC-------CHHHHHHHHHHHhCCCCC-C-cEEEEecCCcEeh----HHHHhcC
Confidence 56766666666666643 677899999999999643 3 3457899998883 4554444
No 66
>COG1470 Predicted membrane protein [Function unknown]
Probab=62.39 E-value=72 Score=36.61 Aligned_cols=105 Identities=15% Similarity=0.071 Sum_probs=72.8
Q ss_pred cceEEeeeeecCCC---ceeCCCCcEEEEEEEEeccCCCCCCCcEEEEecCCCCCCC-CceeeeccCCCCCCCCEEEEEE
Q 007185 477 LDSCFILDVNVLDG---TMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDG-VSVEIEVPADGVPVEGEIDIAV 552 (614)
Q Consensus 477 l~A~FV~DVTipDG---T~V~Pgt~FtKtWrLrN~Gt~~WP~G~~L~fvgGd~m~~~-~sv~~~ipv~~v~PGeevdVSV 552 (614)
...++..+++++.| ..+.||+.-+--=.+-|.|+.+- .+..|.--+ . ++-. .-.+.. ++.++|||...|++
T Consensus 374 ~~g~~~~~v~l~~g~~~lt~taGee~~i~i~I~NsGna~L-tdIkl~v~~-P-qgWei~Vd~~~--I~sL~pge~~tV~l 448 (513)
T COG1470 374 NTGSYNELVKLDNGPYRLTITAGEEKTIRISIENSGNAPL-TDIKLTVNG-P-QGWEIEVDEST--IPSLEPGESKTVSL 448 (513)
T ss_pred eccccceeEEccCCcEEEEecCCccceEEEEEEecCCCcc-ceeeEEecC-C-ccceEEECccc--ccccCCCCcceEEE
Confidence 34556666777664 47899999999999999999877 566664332 2 2210 011223 45799999999999
Q ss_pred EEecC--CCCceEEEEEEEECCCCCccCCeEEEEEEEec
Q 007185 553 DFTAP--ELPGRYISYWRMSSPSGVKFGQRVWVLIQVLR 589 (614)
Q Consensus 553 ~L~AP--~~pG~yiSyWRL~tpdG~~FG~~LWv~I~V~~ 589 (614)
+.++| ..+|.|.-..+-.+ |-.---++|.| .|..
T Consensus 449 tI~vP~~a~aGdY~i~i~~ks-Dq~s~e~tlrV--~V~~ 484 (513)
T COG1470 449 TITVPEDAGAGDYRITITAKS-DQASSEDTLRV--VVGQ 484 (513)
T ss_pred EEEcCCCCCCCcEEEEEEEee-ccccccceEEE--EEec
Confidence 99999 45899999999887 44445666654 4444
No 67
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=61.01 E-value=2.8 Score=46.91 Aligned_cols=114 Identities=16% Similarity=0.295 Sum_probs=0.0
Q ss_pred EeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCC-Ccc-eEEEecCCCCEEEecCchhHHHHHHccCceEEEEE
Q 007185 9 VKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHD-SDL-TLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRIDV 86 (614)
Q Consensus 9 vk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~-~~~-~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L~i~V 86 (614)
.+||+.++|+.++. .++++.|++..-+-|.-++. ++| .|--.|..=++----+|+-|.|.-.-.++.|.+..
T Consensus 2 Lq~~~~tKk~~~~~------~~t~~~lr~lFv~~F~~~~~~~~~p~IyI~Dp~~~v~yELed~~l~dikd~s~l~l~~~~ 75 (424)
T PF03915_consen 2 LQYGDKTKKCVLPN------PLTINSLRLLFVEKFAYSPGMDDFPEIYIQDPKSGVFYELEDSNLSDIKDGSVLSLNEEP 75 (424)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcCCeeeeeeCCC------CCCHHHHHHHHHHHccCCCCCCCCCceEeecCCCCceeeecccccccccCCeeEEEeccc
Confidence 47999999999993 35688999999999964443 345 45556765555554555446654444454443332
Q ss_pred EecCCccCCccccCCCCCCCCCCCcccCCchhhhhHHHHHHhcCCchHHHHHH
Q 007185 87 HLNNDKFGKAYARSSGSSTPLRSPRIQHPLPDIDSKISEILKSVPEPLREAIS 139 (614)
Q Consensus 87 ~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~v~~~l~~~~ep~~~~~~ 139 (614)
++.. .+...+ .+..+.+.+..||..|++.-..+-..+.+...
T Consensus 76 -ldev------k~h~d~----~~~~l~~~i~~lk~~l~~~~~~~~~~~~~~~~ 117 (424)
T PF03915_consen 76 -LDEV------KKHIDS----GIGGLSEEIEELKQELDEQQETILQRVKERQQ 117 (424)
T ss_dssp -----------------------------------------------------
T ss_pred -ccch------hhhhcc----chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0111 000011 12345566667777766655555333333333
No 68
>PF11325 DUF3127: Domain of unknown function (DUF3127); InterPro: IPR021474 This bacterial family of proteins has no known function.
Probab=60.56 E-value=29 Score=30.94 Aligned_cols=49 Identities=27% Similarity=0.544 Sum_probs=38.0
Q ss_pred CCCCCCcEEEEecCCCCCCCCceeeeccCCCCCCCCEEEEEEEEecCCCCceE---EEEEEE
Q 007185 511 LAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRY---ISYWRM 569 (614)
Q Consensus 511 ~~WP~G~~L~fvgGd~m~~~~sv~~~ipv~~v~PGeevdVSV~L~AP~~pG~y---iSyWRL 569 (614)
..+|.-..+.+.+ |.... +..+.+|+++.|++++.+=+-.|+| +.-||+
T Consensus 32 ~qYP~~i~f~~~~-dk~~~---------l~~~~~Gd~V~Vsf~i~~RE~~gr~fn~i~aWri 83 (84)
T PF11325_consen 32 EQYPQKICFEFWG-DKIDL---------LDNFQVGDEVKVSFNIEGREWNGRWFNSIRAWRI 83 (84)
T ss_pred CcCCceEEEEEEc-chhhh---------hccCCCCCEEEEEEEeeccEecceEeeEeEEEEe
Confidence 4699999998887 64332 1247899999999999998888988 466775
No 69
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=58.15 E-value=48 Score=28.08 Aligned_cols=76 Identities=17% Similarity=0.215 Sum_probs=50.1
Q ss_pred CCceeEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCc
Q 007185 1 MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLK 80 (614)
Q Consensus 1 m~~~lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~ 80 (614)
|+=.+.||...|.. |.+.+.. +.+.++|..+|++.++++ -....|+|.. +|= -|.|+.-|.++=.+...
T Consensus 1 ~~~~i~Vk~~~G~~---~~~~v~~----~~TV~~lK~~I~~~~~i~-~~~qrL~~~~-~G~--~L~D~~tL~~~gi~~gs 69 (80)
T cd01792 1 MGWDLKVKMLGGNE---FLVSLRD----SMTVSELKQQIAQKIGVP-AFQQRLAHLD-SRE--VLQDGVPLVSQGLGPGS 69 (80)
T ss_pred CceEEEEEeCCCCE---EEEEcCC----CCcHHHHHHHHHHHhCCC-HHHEEEEecc-CCC--CCCCCCCHHHcCCCCCC
Confidence 66457888877754 5666542 358889999999999985 5678886544 343 35566556665334456
Q ss_pred eEEEEEE
Q 007185 81 FLRIDVH 87 (614)
Q Consensus 81 ~L~i~V~ 87 (614)
.|.+.+.
T Consensus 70 ~l~l~~~ 76 (80)
T cd01792 70 TVLLVVQ 76 (80)
T ss_pred EEEEEEE
Confidence 6665553
No 70
>PF02221 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The MD-2-related lipid-recognition (ML) domain is implicated in lipid recognition, particularly in the recognition of pathogen related products. It has an immunoglobulin-like beta-sandwich fold similar to that of E-set Ig domains. This domain is present in the following proteins: Epididymal secretory protein E1 (also known as Niemann-Pick C2 protein), which is known to bind cholesterol. Niemann-Pick disease type C2 is a fatal hereditary disease characterised by accumulation of low-density lipoprotein-derived cholesterol in lysosomes []. House-dust mite allergen proteins such as Der f 2 from Dermatophagoides farinae and Der p 2 from Dermatophagoides pteronyssinus []. ; PDB: 2AG9_B 1G13_B 2AG2_B 2AG4_A 1TJJ_C 1PU5_C 1PUB_A 2AF9_A 3T6Q_D 3M7O_B ....
Probab=55.33 E-value=38 Score=30.54 Aligned_cols=35 Identities=17% Similarity=0.515 Sum_probs=28.1
Q ss_pred CCCCCCEEEEEEEEecCCC--CceEEEEEEEECCCCC
Q 007185 541 GVPVEGEIDIAVDFTAPEL--PGRYISYWRMSSPSGV 575 (614)
Q Consensus 541 ~v~PGeevdVSV~L~AP~~--pG~yiSyWRL~tpdG~ 575 (614)
++.+|+....++++..|.. +|.|.-.|+|.+.+|.
T Consensus 87 Pi~~G~~~~~~~~~~i~~~~p~~~~~i~~~l~d~~~~ 123 (134)
T PF02221_consen 87 PIKAGEYYTYTYTIPIPKIYPPGKYTIQWKLTDQDGE 123 (134)
T ss_dssp TBTTTEEEEEEEEEEESTTSSSEEEEEEEEEEETTTE
T ss_pred ccCCCcEEEEEEEEEcccceeeEEEEEEEEEEeCCCC
Confidence 4789998788777766643 6999999999998754
No 71
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=54.88 E-value=47 Score=26.70 Aligned_cols=68 Identities=22% Similarity=0.328 Sum_probs=43.5
Q ss_pred eEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceEEE
Q 007185 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRI 84 (614)
Q Consensus 5 lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L~i 84 (614)
+.||.-.|.. +.+.+.. +-+..+|+.+|++.++++ -....|.|. |. .|.|+..|.++=.+....|.+
T Consensus 3 i~vk~~~g~~---~~~~v~~----~~tv~~lK~~i~~~~gi~-~~~q~L~~~---g~--~L~d~~~L~~~~i~~~~~l~l 69 (72)
T cd01809 3 IKVKTLDSQT---HTFTVEE----EITVLDLKEKIAEEVGIP-VEQQRLIYS---GR--VLKDDETLSEYKVEDGHTIHL 69 (72)
T ss_pred EEEEeCCCCE---EEEEECC----CCcHHHHHHHHHHHHCcC-HHHeEEEEC---CE--ECCCcCcHHHCCCCCCCEEEE
Confidence 5566666653 3555543 257889999999999985 447888893 54 355666666642344445544
Q ss_pred E
Q 007185 85 D 85 (614)
Q Consensus 85 ~ 85 (614)
.
T Consensus 70 ~ 70 (72)
T cd01809 70 V 70 (72)
T ss_pred E
Confidence 3
No 72
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=54.61 E-value=35 Score=30.09 Aligned_cols=57 Identities=23% Similarity=0.351 Sum_probs=39.5
Q ss_pred EEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHH
Q 007185 7 IKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVM 75 (614)
Q Consensus 7 iKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~ 75 (614)
+||+-.+.-.|+-+-.. ++.+|+.|.+..|++.. ..+.| -.+||| |.+||+|+...+
T Consensus 5 fkV~~~~r~~k~GV~A~-------sL~EL~~K~~~~l~~~~-~~~~l-vL~eDG---T~Vd~EeyF~~L 61 (78)
T cd06539 5 FRVSNHDRSSRRGVMAS-------SLQELISKTLDALVITS-GLVTL-VLEEDG---TVVDTEEFFQTL 61 (78)
T ss_pred EEEecCCCCceEEEEec-------CHHHHHHHHHHHhCCCC-CCcEE-EEeCCC---CEEccHHHHhhC
Confidence 56665554445555532 77889999999999953 33443 468999 667888887665
No 73
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=53.85 E-value=54 Score=31.26 Aligned_cols=76 Identities=17% Similarity=0.180 Sum_probs=46.3
Q ss_pred EEEEEEEEeccCCCCCC-CcEEEEecCCCCCCCCce-----eeeccCCCCCCCCEEEEEEEEecCCCCceEEEEEEEECC
Q 007185 499 FTKIWRMRNTGNLAWPR-GSQLVWIGGDKFSDGVSV-----EIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSSP 572 (614)
Q Consensus 499 FtKtWrLrN~Gt~~WP~-G~~L~fvgGd~m~~~~sv-----~~~ipv~~v~PGeevdVSV~L~AP~~pG~yiSyWRL~tp 572 (614)
|-=+=+|+|.|.++|-- +.+-.-.+|+ +.++.+ -=+-| -++||++..-+=-..-....|.-..++.|.+.
T Consensus 30 faYtitI~N~g~~~vqLlsR~W~ITd~~--g~v~eV~G~GVVGeQP--~l~PG~~y~YtSg~~l~Tp~G~M~GhY~M~~e 105 (126)
T COG2967 30 FAYTVTIRNLGEVPVQLLSRYWLITDGN--GRVTEVEGEGVVGEQP--LLAPGEEYQYTSGCPLDTPSGTMQGHYEMIDE 105 (126)
T ss_pred EEEEEEEecCCCccceeeeeEEEEecCC--CcEEEEEcCceecccc--ccCCCCceEEcCCcCccCCcceEEEEEEEecC
Confidence 55555688888888731 2222333333 222111 01223 37999998887433334557999999999999
Q ss_pred CCCccC
Q 007185 573 SGVKFG 578 (614)
Q Consensus 573 dG~~FG 578 (614)
+|..|-
T Consensus 106 ~G~~F~ 111 (126)
T COG2967 106 DGETFD 111 (126)
T ss_pred CCcEEE
Confidence 998874
No 74
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=52.85 E-value=31 Score=30.64 Aligned_cols=56 Identities=27% Similarity=0.334 Sum_probs=40.6
Q ss_pred EEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHH
Q 007185 7 IKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVM 75 (614)
Q Consensus 7 iKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~ 75 (614)
+||+-.+.-.|+-+-.. ++.+|+.|.+..|.++. .+.| -.+||| |.+||+|+...|
T Consensus 5 fkv~~~~r~~kkGV~A~-------sL~EL~~K~~~~L~~~~--~~~l-vLeeDG---T~Vd~EeyF~tL 60 (81)
T cd06537 5 FRVCDHKRTVRKGLTAA-------SLQELLAKALETLLLSG--VLTL-VLEEDG---TAVDSEDFFELL 60 (81)
T ss_pred eEEecCCCCeeEeEEcc-------CHHHHHHHHHHHhCCCC--ceEE-EEecCC---CEEccHHHHhhC
Confidence 57776666666666643 67789999999999952 2333 568999 667888887766
No 75
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=52.73 E-value=28 Score=26.86 Aligned_cols=44 Identities=14% Similarity=0.139 Sum_probs=26.8
Q ss_pred EEEEeccCCCCCCCcEEEEecCCCCCCCCceeeeccCCCCCCCCEEEEEEEE
Q 007185 503 WRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDF 554 (614)
Q Consensus 503 WrLrN~Gt~~WP~G~~L~fvgGd~m~~~~sv~~~ipv~~v~PGeevdVSV~L 554 (614)
++++|.|.... .+.-+.-..-+ .. .+.+...++|||+..|.|.|
T Consensus 2 F~~~N~g~~~L----~I~~v~tsCgC--t~--~~~~~~~i~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPL----VITDVQTSCGC--TT--AEYSKKPIAPGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcE----EEEEeeEccCC--EE--eeCCcceECCCCEEEEEEEC
Confidence 57999999765 34433322111 11 13333458999999999875
No 76
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=51.80 E-value=78 Score=25.71 Aligned_cols=70 Identities=14% Similarity=0.293 Sum_probs=46.9
Q ss_pred eEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceEEE
Q 007185 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRI 84 (614)
Q Consensus 5 lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L~i 84 (614)
+.||...|.. +.+.+.. +.+..+|+.+|++.++++++ ...|.|. |- -|.|+.-|.++=.+.-..|.+
T Consensus 3 i~v~~~~g~~---~~~~v~~----~~tv~~lK~~i~~~~g~~~~-~qrL~~~---g~--~L~d~~tl~~~~i~~g~~i~l 69 (76)
T cd01806 3 IKVKTLTGKE---IEIDIEP----TDKVERIKERVEEKEGIPPQ-QQRLIYS---GK--QMNDDKTAADYKLEGGSVLHL 69 (76)
T ss_pred EEEEeCCCCE---EEEEECC----CCCHHHHHHHHhHhhCCChh-hEEEEEC---Ce--EccCCCCHHHcCCCCCCEEEE
Confidence 5677776765 3455542 35788999999999998655 6788885 43 345777777753344456666
Q ss_pred EEE
Q 007185 85 DVH 87 (614)
Q Consensus 85 ~V~ 87 (614)
.+.
T Consensus 70 ~~~ 72 (76)
T cd01806 70 VLA 72 (76)
T ss_pred EEE
Confidence 654
No 77
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=51.31 E-value=61 Score=26.40 Aligned_cols=47 Identities=19% Similarity=0.259 Sum_probs=32.7
Q ss_pred EEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEec
Q 007185 6 VIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVD 57 (614)
Q Consensus 6 viKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~D 57 (614)
.||++.-+ -+.+.+++.. +-.+..|..+.++..+++...++.|.|..
T Consensus 2 ~i~v~~~~-~~~~~~~v~~----~~~~~~l~~~~~~~~~i~~~~~~~l~fdG 48 (72)
T PF11976_consen 2 TIKVRSQD-GKEIKFKVKP----TTTVSKLIEKYCEKKGIPPEESIRLIFDG 48 (72)
T ss_dssp EEEEEETT-SEEEEEEEET----TSCCHHHHHHHHHHHTTTT-TTEEEEETT
T ss_pred EEEEEeCC-CCEEEEEECC----CCcHHHHHHHHHHhhCCCccceEEEEECC
Confidence 34555543 3356666653 24777899999999999876899999954
No 78
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=49.52 E-value=39 Score=28.87 Aligned_cols=55 Identities=18% Similarity=0.241 Sum_probs=37.9
Q ss_pred eEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCch-hHHH
Q 007185 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDD-DLCD 73 (614)
Q Consensus 5 lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~-DL~~ 73 (614)
+.=|+++|+++. +.+. .+.+..+|+.+|+..++++++ ...| |.... |.||+ -|.+
T Consensus 5 ~~~~~~~~~t~~-l~v~------~~~TV~~lK~kI~~~~gip~~-~QrL-~~G~~-----L~dD~~tL~~ 60 (75)
T cd01799 5 VEDAQSHTVTIW-LTVR------PDMTVAQLKDKVFLDYGFPPA-VQRW-VIGQR-----LARDQETLYS 60 (75)
T ss_pred EeccccCCCeEE-EEEC------CCCcHHHHHHHHHHHHCcCHH-HEEE-EcCCe-----eCCCcCCHHH
Confidence 344788888764 5554 246889999999999999755 6777 86443 55554 4444
No 79
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=48.49 E-value=16 Score=27.20 Aligned_cols=39 Identities=15% Similarity=0.220 Sum_probs=29.1
Q ss_pred eecCCCCCCCccccceecCCCCCcchhhhhhhhCCCCcceEEe
Q 007185 380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRI 422 (614)
Q Consensus 380 V~CDgC~~~pI~G~RYKCsvC~DyDLC~~C~a~~~~~H~~~ki 422 (614)
..|+.|.. .-.+|-|..|.. -+|..|....+..|.+..|
T Consensus 4 ~~C~~H~~---~~~~~~C~~C~~-~~C~~C~~~~H~~H~~~~i 42 (42)
T PF00643_consen 4 PKCPEHPE---EPLSLFCEDCNE-PLCSECTVSGHKGHKIVPI 42 (42)
T ss_dssp SB-SSTTT---SBEEEEETTTTE-EEEHHHHHTSTTTSEEEEC
T ss_pred ccCccCCc---cceEEEecCCCC-ccCccCCCCCCCCCEEeEC
Confidence 46777773 237899999975 6999999887777887654
No 80
>PRK10301 hypothetical protein; Provisional
Probab=46.12 E-value=47 Score=31.11 Aligned_cols=33 Identities=24% Similarity=0.396 Sum_probs=26.4
Q ss_pred EEEEEEEecCCCCceEEEEEEEECCCCCccCCe
Q 007185 548 IDIAVDFTAPELPGRYISYWRMSSPSGVKFGQR 580 (614)
Q Consensus 548 vdVSV~L~AP~~pG~yiSyWRL~tpdG~~FG~~ 580 (614)
-.++|.+..+-.+|.|.-.||....||..-.-.
T Consensus 86 ~~~~v~l~~~L~~G~YtV~Wrvvs~DGH~~~G~ 118 (124)
T PRK10301 86 KQLIVPLADSLKPGTYTVDWHVVSVDGHKTKGH 118 (124)
T ss_pred cEEEEECCCCCCCccEEEEEEEEecCCCccCCe
Confidence 446777777789999999999999999764433
No 81
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=44.99 E-value=1.4e+02 Score=26.43 Aligned_cols=71 Identities=21% Similarity=0.344 Sum_probs=53.4
Q ss_pred EEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHH-----ccCc
Q 007185 6 VIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMR-----QRLK 80 (614)
Q Consensus 6 viKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~-----q~l~ 80 (614)
-||.-|.+.=|=|.++- -+.+.+|+.|+..+|+. .+-|-|+... =+|-|-+-+||-.|+. -.++
T Consensus 2 RiKfE~~gEKRIi~f~R------Pvkf~dl~~kv~~afGq----~mdl~ytn~e-L~iPl~~Q~DLDkAie~ld~s~~~k 70 (79)
T cd06405 2 RIKFEHNGEKRIIQFPR------PVKFKDLQQKVTTAFGQ----PMDLHYTNNE-LLIPLKNQEDLDRAIELLDRSPHMK 70 (79)
T ss_pred eEEEEecCceEEEecCC------CccHHHHHHHHHHHhCC----eeeEEEeccc-EEEeccCHHHHHHHHHHHccCcccc
Confidence 48888988777777772 36778999999999986 3567787654 6788899999988762 2455
Q ss_pred eEEEEEE
Q 007185 81 FLRIDVH 87 (614)
Q Consensus 81 ~L~i~V~ 87 (614)
-|||.+.
T Consensus 71 sLRilL~ 77 (79)
T cd06405 71 SLRILLS 77 (79)
T ss_pred ceeEeEe
Confidence 6777664
No 82
>KOG4317 consensus Predicted Zn-finger protein [Function unknown]
Probab=44.83 E-value=11 Score=41.01 Aligned_cols=32 Identities=22% Similarity=0.600 Sum_probs=24.6
Q ss_pred eecCCCCCCCccccceecCCCCCcchhhh-hhhhCCC
Q 007185 380 VRCDGCGVHPITGPRFKSKVKDDYDLCSI-CFAAMGS 415 (614)
Q Consensus 380 V~CDgC~~~pI~G~RYKCsvC~DyDLC~~-C~a~~~~ 415 (614)
+.|-.|++++ .||+|-.| |+-+|+. ||..|.+
T Consensus 8 ~~C~ic~vq~---~~YtCPRC-n~~YCsl~CYr~h~~ 40 (383)
T KOG4317|consen 8 LACGICGVQK---REYTCPRC-NLLYCSLKCYRNHKH 40 (383)
T ss_pred eecccccccc---ccccCCCC-CccceeeeeecCCCc
Confidence 5677787655 67999999 5778987 9987543
No 83
>PTZ00044 ubiquitin; Provisional
Probab=44.63 E-value=71 Score=26.30 Aligned_cols=71 Identities=17% Similarity=0.240 Sum_probs=47.9
Q ss_pred eEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceEEE
Q 007185 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRI 84 (614)
Q Consensus 5 lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L~i 84 (614)
+.||.--|.. +.+.+.. +.+..+|+.+|++..++++ .+..|-|. |-. |.|+..|.++=.+.-..|.+
T Consensus 3 i~vk~~~G~~---~~l~v~~----~~tv~~lK~~i~~~~gi~~-~~q~L~~~---g~~--L~d~~~l~~~~i~~~~~i~l 69 (76)
T PTZ00044 3 ILIKTLTGKK---QSFNFEP----DNTVQQVKMALQEKEGIDV-KQIRLIYS---GKQ--MSDDLKLSDYKVVPGSTIHM 69 (76)
T ss_pred EEEEeCCCCE---EEEEECC----CCcHHHHHHHHHHHHCCCH-HHeEEEEC---CEE--ccCCCcHHHcCCCCCCEEEE
Confidence 4566655653 4566543 3578899999999999864 56778895 433 56777777754455567777
Q ss_pred EEEe
Q 007185 85 DVHL 88 (614)
Q Consensus 85 ~V~l 88 (614)
.+.+
T Consensus 70 ~~~~ 73 (76)
T PTZ00044 70 VLQL 73 (76)
T ss_pred EEEc
Confidence 6654
No 84
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=44.40 E-value=18 Score=31.83 Aligned_cols=61 Identities=20% Similarity=0.320 Sum_probs=33.0
Q ss_pred CCCceeCCCCcEEEEEEEEeccCCCCCCCcEEEEecCCCCCCCCceeeeccCCCCCCCCEEEEEEEEecCCCCceEEEEE
Q 007185 488 LDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYW 567 (614)
Q Consensus 488 pDGT~V~Pgt~FtKtWrLrN~Gt~~WP~G~~L~fvgGd~m~~~~sv~~~ipv~~v~PGeevdVSV~L~AP~~pG~yiSyW 567 (614)
|+--.+++|++.+ ++++|.|... -.++.-+ +. .. ..+.||++..+++ +|.++|+|.=|-
T Consensus 34 P~~i~v~~G~~v~--l~~~N~~~~~----h~~~i~~---~~------~~---~~l~~g~~~~~~f---~~~~~G~y~~~C 92 (104)
T PF13473_consen 34 PSTITVKAGQPVT--LTFTNNDSRP----HEFVIPD---LG------IS---KVLPPGETATVTF---TPLKPGEYEFYC 92 (104)
T ss_dssp S-EEEEETTCEEE--EEEEE-SSS-----EEEEEGG---GT------EE---EEE-TT-EEEEEE---EE-S-EEEEEB-
T ss_pred cCEEEEcCCCeEE--EEEEECCCCc----EEEEECC---Cc------eE---EEECCCCEEEEEE---cCCCCEEEEEEc
Confidence 4445788888777 4467888763 3343333 11 11 1368999976665 589999998666
Q ss_pred EE
Q 007185 568 RM 569 (614)
Q Consensus 568 RL 569 (614)
+|
T Consensus 93 ~~ 94 (104)
T PF13473_consen 93 TM 94 (104)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 85
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=44.04 E-value=63 Score=27.11 Aligned_cols=62 Identities=15% Similarity=0.163 Sum_probs=44.1
Q ss_pred eeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceEEEEEEe
Q 007185 17 RFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRIDVHL 88 (614)
Q Consensus 17 Rf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L~i~V~l 88 (614)
.+++.++. +.+..+|+.+|+....++ -+...|.|... .|.|+..|.++=.+...+|.+.+.+
T Consensus 9 ~~~l~v~~----~~TV~~lK~~i~~~~gip-~~~q~L~~~G~-----~L~d~~tL~~~~i~~g~~l~v~~~~ 70 (76)
T cd01800 9 MLNFTLQL----SDPVSVLKVKIHEETGMP-AGKQKLQYEGI-----FIKDSNSLAYYNLANGTIIHLQLKE 70 (76)
T ss_pred EEEEEECC----CCcHHHHHHHHHHHHCCC-HHHEEEEECCE-----EcCCCCcHHHcCCCCCCEEEEEEec
Confidence 44555542 358889999999999985 45788889863 5778777877544556777776654
No 86
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=41.37 E-value=45 Score=29.45 Aligned_cols=30 Identities=30% Similarity=0.598 Sum_probs=22.1
Q ss_pred EEEEEEEecCCCCceEEEEEEEECCCCCcc
Q 007185 548 IDIAVDFTAPELPGRYISYWRMSSPSGVKF 577 (614)
Q Consensus 548 vdVSV~L~AP~~pG~yiSyWRL~tpdG~~F 577 (614)
-.+++.+..+-.+|+|.-.||....||..-
T Consensus 59 ~~~~~~l~~~l~~G~YtV~wrvvs~DGH~~ 88 (97)
T PF04234_consen 59 KTLTVPLPPPLPPGTYTVSWRVVSADGHPV 88 (97)
T ss_dssp TEEEEEESS---SEEEEEEEEEEETTSCEE
T ss_pred eEEEEECCCCCCCceEEEEEEEEecCCCCc
Confidence 456677766788999999999999999753
No 87
>smart00737 ML Domain involved in innate immunity and lipid metabolism. ML (MD-2-related lipid-recognition) is a novel domain identified in MD-1, MD-2, GM2A, Npc2 and multiple proteins of unknown function in plants, animals and fungi. These single-domain proteins were predicted to form a beta-rich fold containing multiple strands, and to mediate diverse biological functions through interacting with specific lipids.
Probab=41.09 E-value=62 Score=28.94 Aligned_cols=35 Identities=20% Similarity=0.576 Sum_probs=27.9
Q ss_pred CCCCCCEEEEEEEEecCCC--CceEEEEEEEECCCCC
Q 007185 541 GVPVEGEIDIAVDFTAPEL--PGRYISYWRMSSPSGV 575 (614)
Q Consensus 541 ~v~PGeevdVSV~L~AP~~--pG~yiSyWRL~tpdG~ 575 (614)
++.+|+.+.....|..|.. +|.|...|+|.+.+|.
T Consensus 73 Pl~~G~~~~~~~~~~v~~~~P~~~~~v~~~l~d~~~~ 109 (118)
T smart00737 73 PIEKGETVNYTNSLTVPGIFPPGKYTVKWELTDEDGE 109 (118)
T ss_pred CCCCCeeEEEEEeeEccccCCCeEEEEEEEEEcCCCC
Confidence 3688999888877666643 7999999999997754
No 88
>PF07929 PRiA4_ORF3: Plasmid pRiA4b ORF-3-like protein; InterPro: IPR012912 Members of this family are similar to the protein product of ORF-3 (Q44206 from SWISSPROT) found on plasmid pRiA4 in the bacterium Agrobacterium rhizogenes. This plasmid is responsible for tumourigenesis at wound sites of plants infected by this bacterium, but the ORF-3 product does not seem to be involved in the pathogenetic process []. Other proteins found in this family are annotated as being putative TnpR resolvases (Q9LCU7 from SWISSPROT, Q50439 from SWISSPROT), but no further evidence was found to back this. Moreover, another member of this family is described as a probable lexA repressor (Q7UEI4 from SWISSPROT) and in fact carries a LexA DNA binding domain (IPR006199 from INTERPRO), but no references were found to expand on this. ; PDB: 2I1S_A.
Probab=39.90 E-value=95 Score=30.13 Aligned_cols=46 Identities=20% Similarity=0.331 Sum_probs=31.4
Q ss_pred ceeEEEEeeCC----cceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEE
Q 007185 3 STMVIKVKYGD----TLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLT 54 (614)
Q Consensus 3 ~~lviKvk~gd----dlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lk 54 (614)
+.+.|||++-+ .-|||.|+. ++++.+|-..||.+|....+.=+...
T Consensus 3 ~~y~lkV~L~~~~p~iwRri~Vp~------~~tl~~Lh~~Iq~afgw~~~HL~~F~ 52 (179)
T PF07929_consen 3 KVYQLKVSLKGSKPPIWRRIEVPA------DITLADLHEVIQAAFGWDDDHLYEFF 52 (179)
T ss_dssp EEEEEEEEETT-SS-EEEEEEEET------T-BHHHHHHHHHHHTT----S-EEEE
T ss_pred eEEEEEEEEcCCCCCeEEEEEECC------CCCHHHHHHHHHHHhCcCCCEeEEEE
Confidence 46889999864 379999993 46888999999999987654433333
No 89
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=39.26 E-value=97 Score=25.72 Aligned_cols=70 Identities=20% Similarity=0.185 Sum_probs=49.0
Q ss_pred EEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceEEEEE
Q 007185 7 IKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRIDV 86 (614)
Q Consensus 7 iKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L~i~V 86 (614)
|.||-+ +.+.+.+.. +-+.++|+.+|++.++++ -++..|-|. |-. |.|+.-|.++=.+....|.+.+
T Consensus 3 i~vk~~---~~~~l~v~~----~~tV~~lK~~i~~~~gip-~~~q~Li~~---Gk~--L~D~~tL~~~~i~~~~tl~l~~ 69 (74)
T cd01793 3 LFVRAQ---NTHTLEVTG----QETVSDIKAHVAGLEGID-VEDQVLLLA---GVP--LEDDATLGQCGVEELCTLEVAG 69 (74)
T ss_pred EEEECC---CEEEEEECC----cCcHHHHHHHHHhhhCCC-HHHEEEEEC---CeE--CCCCCCHHHcCCCCCCEEEEEE
Confidence 444543 567777754 358889999999999985 557788885 433 6677667775456667888877
Q ss_pred Eec
Q 007185 87 HLN 89 (614)
Q Consensus 87 ~l~ 89 (614)
.+.
T Consensus 70 ~l~ 72 (74)
T cd01793 70 RLL 72 (74)
T ss_pred ecC
Confidence 654
No 90
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=37.78 E-value=1.2e+02 Score=31.69 Aligned_cols=48 Identities=17% Similarity=0.296 Sum_probs=34.6
Q ss_pred CcEEEEEEEEeccCCCCCCCcEEEEecCCCCCCCCceeeeccCCCCCCCCEEEEEE
Q 007185 497 TPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAV 552 (614)
Q Consensus 497 t~FtKtWrLrN~Gt~~WP~G~~L~fvgGd~m~~~~sv~~~ipv~~v~PGeevdVSV 552 (614)
..|... +++|.....||.|-.-+|.+|...+.. .+ +.+++||++.++.
T Consensus 167 ~a~l~a-~~~n~~~~~L~~G~~~v~~dg~~vG~~-----~l--~~~~~ge~~~l~~ 214 (317)
T PF13598_consen 167 NAYLVA-RFKNTSGLPLLPGPVSVYRDGTFVGES-----RL--PHTAPGEEFELSF 214 (317)
T ss_pred CeEEEE-EEECCCCCcccCCcEEEEECCEEEEee-----ec--CCCCCCCEEEEEc
Confidence 445544 689999999999999999998755521 22 3467888877654
No 91
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=37.09 E-value=29 Score=29.99 Aligned_cols=63 Identities=11% Similarity=-0.033 Sum_probs=32.1
Q ss_pred CCCCCEEEEEEEEecCC----CCceEEEEEEEECCCCCccCCeEEEEEEEecCCcchhhhHHHHhhhhcc
Q 007185 542 VPVEGEIDIAVDFTAPE----LPGRYISYWRMSSPSGVKFGQRVWVLIQVLRALESIAISFEAYAFDNLV 607 (614)
Q Consensus 542 v~PGeevdVSV~L~AP~----~pG~yiSyWRL~tpdG~~FG~~LWv~I~V~~~~~~i~ls~Q~~~~~~lg 607 (614)
-.|||+|.|.+-++... .+-...-+..+.+|+|...-...+ ......+.+.+++++.+-..+|
T Consensus 11 YrPGetV~~~~~~~~~~~~~~~~~~~~~~v~i~dp~g~~v~~~~~---~~~~~~G~~~~~~~lp~~~~~G 77 (99)
T PF01835_consen 11 YRPGETVHFRAIVRDLDNDFKPPANSPVTVTIKDPSGNEVFRWSV---NTTNENGIFSGSFQLPDDAPLG 77 (99)
T ss_dssp E-TTSEEEEEEEEEEECTTCSCESSEEEEEEEEETTSEEEEEEEE---EETTCTTEEEEEEE--SS---E
T ss_pred cCCCCEEEEEEEEeccccccccccCCceEEEEECCCCCEEEEEEe---eeeCCCCEEEEEEECCCCCCCE
Confidence 36788888877655444 122244557777777755433222 2334456666666666555555
No 92
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=34.42 E-value=28 Score=28.37 Aligned_cols=30 Identities=23% Similarity=0.590 Sum_probs=17.8
Q ss_pred ecCCCCCCCccc--------cceecCCCCCcchhhhhhhh
Q 007185 381 RCDGCGVHPITG--------PRFKSKVKDDYDLCSICFAA 412 (614)
Q Consensus 381 ~CDgC~~~pI~G--------~RYKCsvC~DyDLC~~C~a~ 412 (614)
.|-+|.. ++.. .||+|..|.. +||-.|-.-
T Consensus 1 ~CfgC~~-~~~~~~~~~~~~~~y~C~~C~~-~FC~dCD~f 38 (51)
T PF07975_consen 1 YCFGCQK-PFPDGPEKKADSSRYRCPKCKN-HFCIDCDVF 38 (51)
T ss_dssp EETTTTE-E-TTS-------EEE--TTTT---B-HHHHHT
T ss_pred CCccCCC-CCCCcccccccCCeEECCCCCC-ccccCcChh
Confidence 4778874 3333 6999999975 499999654
No 93
>cd00917 PG-PI_TP The phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP) has been shown to bind phosphatidylglycerol and phosphatidylinositol, but the biological significance of this is still obscure. These proteins belong to the ML domain family.
Probab=34.19 E-value=91 Score=28.65 Aligned_cols=33 Identities=15% Similarity=0.234 Sum_probs=26.5
Q ss_pred CCCCCCEEEEEEEEecCC--CCceEEEEEEEECCCC
Q 007185 541 GVPVEGEIDIAVDFTAPE--LPGRYISYWRMSSPSG 574 (614)
Q Consensus 541 ~v~PGeevdVSV~L~AP~--~pG~yiSyWRL~tpdG 574 (614)
++++|+.. ++.++.-|. -+|+|.-.|+|.+.++
T Consensus 78 Pi~~G~~~-~~~~~~ip~~~P~g~y~v~~~l~d~~~ 112 (122)
T cd00917 78 PIEPGDKF-LTKLVDLPGEIPPGKYTVSARAYTKDD 112 (122)
T ss_pred CcCCCcEE-EEEEeeCCCCCCCceEEEEEEEECCCC
Confidence 46889987 776777775 4899999999999765
No 94
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=34.07 E-value=1.3e+02 Score=28.64 Aligned_cols=81 Identities=14% Similarity=0.265 Sum_probs=46.4
Q ss_pred EeeeeecCCCceeCCCCcEEEEEEEEeccCCCCCCCcEEEEecCCCCCCCCceeeeccCCCCCCCCEEEEEEEEecCCCC
Q 007185 481 FILDVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELP 560 (614)
Q Consensus 481 FV~DVTipDGT~V~Pgt~FtKtWrLrN~Gt~~WP~G~~L~fvgGd~m~~~~sv~~~ipv~~v~PGeevdVSV~L~AP~~p 560 (614)
|.--|+|-+-. -.+=+--...|.|.+.- |. +.-|.|+ +.+. +.| -|.|||...-+=-..-....
T Consensus 31 f~Y~ItI~N~~-~~~vQL~~R~W~I~d~~------g~-~~~V~G~--GVVG----~qP--~L~PGe~F~Y~S~~~l~tp~ 94 (127)
T PRK05461 31 FAYTITIENLG-RVPVQLLSRHWLITDAN------GR-VQEVRGE--GVVG----EQP--VLAPGESFEYTSGAVLETPS 94 (127)
T ss_pred EEEEEEEEECC-CCCEEEEeeeEEEEECC------CC-EEEEECC--ceec----CCc--eECCCCCeEEeCCCCccCCC
Confidence 33345554422 23345556788888641 22 4456665 2211 223 37899977665322223567
Q ss_pred ceEEEEEEEECCCCCcc
Q 007185 561 GRYISYWRMSSPSGVKF 577 (614)
Q Consensus 561 G~yiSyWRL~tpdG~~F 577 (614)
|.-..++.|.+.+|..|
T Consensus 95 G~M~G~y~~~~~~G~~F 111 (127)
T PRK05461 95 GTMQGHYQMVDEDGERF 111 (127)
T ss_pred EEEEEEEEEEeCCCCEE
Confidence 88899999998888654
No 95
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=33.91 E-value=1.2e+02 Score=25.07 Aligned_cols=70 Identities=11% Similarity=0.158 Sum_probs=46.8
Q ss_pred EEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceEEEE
Q 007185 6 VIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRID 85 (614)
Q Consensus 6 viKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L~i~ 85 (614)
.||.-.|.. +.+.+.. +.+.++|+.+|++..+++ -.++.|.|. |- .|.|+.-|.++=.+.-..|.+.
T Consensus 2 ~vk~~~g~~---~~l~v~~----~~tV~~lK~~I~~~~gi~-~~~q~L~~~---G~--~L~D~~tL~~~~i~~~~tl~l~ 68 (74)
T cd01810 2 LVRNDKGRS---SIYEVQL----TQTVATLKQQVSQRERVQ-ADQFWLSFE---GR--PMEDEHPLGEYGLKPGCTVFMN 68 (74)
T ss_pred EEECCCCCE---EEEEECC----cChHHHHHHHHHHHhCCC-HHHeEEEEC---CE--ECCCCCCHHHcCCCCCCEEEEE
Confidence 456666653 3555542 358899999999999985 567888885 33 3567777777434555677776
Q ss_pred EEe
Q 007185 86 VHL 88 (614)
Q Consensus 86 V~l 88 (614)
+.+
T Consensus 69 ~~l 71 (74)
T cd01810 69 LRL 71 (74)
T ss_pred EEc
Confidence 654
No 96
>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only]
Probab=33.79 E-value=14 Score=39.17 Aligned_cols=142 Identities=33% Similarity=0.447 Sum_probs=84.0
Q ss_pred EEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceEEEEE
Q 007185 7 IKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRIDV 86 (614)
Q Consensus 7 iKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L~i~V 86 (614)
-.+.|+..-++ ....+-+..+...++....++...|.+..+.....+|.|+++..+.+..+.|+.+.-+++....-+.|
T Consensus 10 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 88 (278)
T KOG4582|consen 10 EETEYGPVERR-RVPVKLNGQIDEEMAGSKEKVAALFNLSTDAALSRTYSDEDGVGMRVVRGNDLFDVTNQRLADEIGHV 88 (278)
T ss_pred chheecccccc-CCcccccceeeecCchhhhhhhhhcCcchhHHHhhhhhhccccceeEEecCCceEeecccCccccccc
Confidence 34556655555 55555455666677788888999999888999999999999999999999999873332222222222
Q ss_pred EecCCccCCccccCCCCCCCCCCCcccCCchhhhhHHHHHHhcCCchHHHHHHhhhhhhhhhhccCCchHHHHHHHHHhh
Q 007185 87 HLNNDKFGKAYARSSGSSTPLRSPRIQHPLPDIDSKISEILKSVPEPLREAISKLSTDVASKAASTSPMIADLVGCFSKM 166 (614)
Q Consensus 87 ~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~v~~~l~~~~ep~~~~~~k~s~~~~~~a~~s~p~~~~l~~~~~k~ 166 (614)
..... .. ..+.+++++++......+......- +|-.+ | +..+.++.-...|.+.++-+..+++
T Consensus 89 ~~~~~-~~-~~~~~s~~~~~~~~~~~~~~~~~s~------~k~~~--------~-~~~~~~~~~~~~~~~~~~H~~~~~~ 151 (278)
T KOG4582|consen 89 NAVRS-FN-SAAPSSGSSTPATVPVPWDKIPRSI------IKVLE--------K-YQKLASLVITLNPVVGEMHPNISKL 151 (278)
T ss_pred cceee-ec-cccccccccCccccccccchhhhhh------hhhhH--------H-HhhhhhhhhhcCCCccccCCCcccc
Confidence 11111 00 0011344444433222222221111 11111 5 6666777777788888888777777
No 97
>COG5474 Uncharacterized conserved protein [Function unknown]
Probab=33.38 E-value=27 Score=33.91 Aligned_cols=55 Identities=18% Similarity=0.252 Sum_probs=40.0
Q ss_pred eeecCCCCCccccHHHHHHHHHHhcCCCC--------CCcceEEEecCCCCEEEecCchhHHH
Q 007185 19 NARVDENEKLDLDIDGLRAKIKSLFNFPH--------DSDLTLTYVDEDGDIVTLVDDDDLCD 73 (614)
Q Consensus 19 ~~~~~~n~~~~l~~~~L~~~i~~~F~l~~--------~~~~~lkY~DeDGD~VTl~Dd~DL~~ 73 (614)
++-++.++-..||++....||-|.|.+.. .-.|.|-|.||.||-=-|..--+++.
T Consensus 4 ti~ls~e~v~~LDLSpi~q~mer~~r~~e~~ia~~ekqv~f~i~y~~e~gDpRELsEIPEvRl 66 (159)
T COG5474 4 TIVLSKEEVEELDLSPINQMMERYFRTKELLIANREKQVFFIIGYDDEPGDPRELSEIPEVRL 66 (159)
T ss_pred EEEeCHHHHhhcCccHHHHHHHHHHHhHHHhhhchhheEEEEEeccCCCCChHHhhhchHHHH
Confidence 45555444566888889999999884322 34588999999999777776666664
No 98
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=32.53 E-value=1.6e+02 Score=24.96 Aligned_cols=71 Identities=23% Similarity=0.290 Sum_probs=46.6
Q ss_pred eeEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceEE
Q 007185 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLR 83 (614)
Q Consensus 4 ~lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L~ 83 (614)
++.||...|. ++.+.++. +-+..+|+.+|++.+++++ +...|.|. |-+ |.|+ -|.++=.+.-.+|.
T Consensus 3 ~I~Vk~~~G~---~~~l~v~~----~~TV~~LK~~I~~~~~~~~-~~qrL~~~---Gk~--L~d~-~L~~~gi~~~~~i~ 68 (78)
T cd01804 3 NLNIHSTTGT---RFDLSVPP----DETVEGLKKRISQRLKVPK-ERLALLHR---ETR--LSSG-KLQDLGLGDGSKLT 68 (78)
T ss_pred EEEEEECCCC---EEEEEECC----cCHHHHHHHHHHHHhCCCh-HHEEEEEC---CcC--CCCC-cHHHcCCCCCCEEE
Confidence 3567776664 46777753 3478899999999999864 57888888 432 4555 56664233345666
Q ss_pred EEEEe
Q 007185 84 IDVHL 88 (614)
Q Consensus 84 i~V~l 88 (614)
+.+.+
T Consensus 69 l~~~~ 73 (78)
T cd01804 69 LVPTV 73 (78)
T ss_pred EEeec
Confidence 55543
No 99
>PLN02560 enoyl-CoA reductase
Probab=32.27 E-value=1.1e+02 Score=32.92 Aligned_cols=65 Identities=18% Similarity=0.146 Sum_probs=45.2
Q ss_pred eEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCC--EEEecCchhHHH
Q 007185 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGD--IVTLVDDDDLCD 73 (614)
Q Consensus 5 lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD--~VTl~Dd~DL~~ 73 (614)
+.||.+-|..+.+..+.+.. +-+..+|..+|++..+..+-+...|+|.+.+|. -+.|.||.-|.+
T Consensus 3 I~Vk~~~Gk~i~~~~lev~~----~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d 69 (308)
T PLN02560 3 VTVVSRSGREIIKGGLEVPD----SATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKD 69 (308)
T ss_pred EEEEcCCCCeecceeEEcCC----CCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHh
Confidence 67888778766444555542 236789999999998754456789999776664 345667776776
No 100
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=31.51 E-value=1.7e+02 Score=26.54 Aligned_cols=61 Identities=23% Similarity=0.224 Sum_probs=42.3
Q ss_pred eeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceEEEEEEe
Q 007185 18 FNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRIDVHL 88 (614)
Q Consensus 18 f~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L~i~V~l 88 (614)
+.+.+.. +-+.++|+.+|++..+++ -+...|.|--. .|.|+.-|.++=.+.-..|.+.+.+
T Consensus 40 ~~leV~~----~~TV~~lK~kI~~~~gip-~~~QrLi~~Gk-----~L~D~~tL~dy~I~~~stL~l~~~l 100 (103)
T cd01802 40 FELRVSP----FETVISVKAKIQRLEGIP-VAQQHLIWNNM-----ELEDEYCLNDYNISEGCTLKLVLAM 100 (103)
T ss_pred EEEEeCC----CCcHHHHHHHHHHHhCCC-hHHEEEEECCE-----ECCCCCcHHHcCCCCCCEEEEEEec
Confidence 4555542 357889999999999985 55788888533 3777777777534555677777664
No 101
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=31.35 E-value=23 Score=26.65 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=19.3
Q ss_pred ccCceecCCCCCCCccc---cceecCCCC
Q 007185 376 FHKGVRCDGCGVHPITG---PRFKSKVKD 401 (614)
Q Consensus 376 vH~GV~CDgC~~~pI~G---~RYKCsvC~ 401 (614)
.+....|+.|+ ..|.| ..|+|..|.
T Consensus 8 ~~~~~~C~~C~-~~i~~~~~~~~~C~~C~ 35 (50)
T cd00029 8 FFKPTFCDVCR-KSIWGLFKQGLRCSWCK 35 (50)
T ss_pred CCCCCChhhcc-hhhhccccceeEcCCCC
Confidence 34567899998 57777 788898884
No 102
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=31.08 E-value=3.3e+02 Score=25.35 Aligned_cols=64 Identities=14% Similarity=0.171 Sum_probs=40.1
Q ss_pred CCCcEEEEEEEEec--cCCCCCCCcEEEEecCC--CCCCCCcee---eecc---CCCCCCCCEEEEEEEEecCCC
Q 007185 495 PSTPFTKIWRMRNT--GNLAWPRGSQLVWIGGD--KFSDGVSVE---IEVP---ADGVPVEGEIDIAVDFTAPEL 559 (614)
Q Consensus 495 Pgt~FtKtWrLrN~--Gt~~WP~G~~L~fvgGd--~m~~~~sv~---~~ip---v~~v~PGeevdVSV~L~AP~~ 559 (614)
-+..|+-..+|+|. ....|| ...|.+.+-+ .+..-.-.+ +.-. ...++||+++.|.+.|..|..
T Consensus 66 ~~~~l~v~g~i~N~~~~~~~~P-~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~pg~~~~~~~~~~~p~~ 139 (149)
T PF11906_consen 66 GPGVLVVSGTIRNRADFPQALP-ALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPPGESVPFRLRLEDPPP 139 (149)
T ss_pred CCCEEEEEEEEEeCCCCcccCc-eEEEEEECCCCCEEEEEEEChHHhcccccccccccCCCCeEEEEEEeeCCCC
Confidence 35789999999996 456787 5666666432 111000000 0000 336899999999999987755
No 103
>KOG2990 consensus C2C2-type Zn-finger protein [Function unknown]
Probab=31.07 E-value=25 Score=37.75 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=13.8
Q ss_pred CcccCceecCCCCCCCccccce
Q 007185 374 GMFHKGVRCDGCGVHPITGPRF 395 (614)
Q Consensus 374 ~vvH~GV~CDgC~~~pI~G~RY 395 (614)
-..-++|.||||...--.|+||
T Consensus 47 FEMPynIWC~gC~nhIgmGvRy 68 (317)
T KOG2990|consen 47 FEMPYNIWCDGCKNHIGMGVRY 68 (317)
T ss_pred EecccchhhccHHHhhhcccee
Confidence 3445678999997433345555
No 104
>COG1470 Predicted membrane protein [Function unknown]
Probab=30.98 E-value=1.2e+02 Score=34.96 Aligned_cols=76 Identities=21% Similarity=0.322 Sum_probs=53.5
Q ss_pred EeeeeecCCC-ceeCCCCcEEEEEEEEeccCCC---------CCCCcEEEEecCCCCCCCCceeeeccCCCCCCCCEEEE
Q 007185 481 FILDVNVLDG-TMMAPSTPFTKIWRMRNTGNLA---------WPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDI 550 (614)
Q Consensus 481 FV~DVTipDG-T~V~Pgt~FtKtWrLrN~Gt~~---------WP~G~~L~fvgGd~m~~~~sv~~~ipv~~v~PGeevdV 550 (614)
|....|..|+ -.+.+++.|.-+=+|.|.|... -|+|....|..|+. ++.---|.|||+-+|
T Consensus 267 ~ftEl~~s~~~~~i~~~~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~---------~vt~vkL~~gE~kdv 337 (513)
T COG1470 267 YFTELNSSDIYLEISPSTTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGEL---------RVTSVKLKPGEEKDV 337 (513)
T ss_pred eEEEeecccceeEEccCCceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCce---------EEEEEEecCCCceEE
Confidence 3334466664 3679999999999999998764 45566666665542 111113789999999
Q ss_pred EEEEecC--CCCceEEE
Q 007185 551 AVDFTAP--ELPGRYIS 565 (614)
Q Consensus 551 SV~L~AP--~~pG~yiS 565 (614)
+|+++.| ..||.|.-
T Consensus 338 tleV~ps~na~pG~Ynv 354 (513)
T COG1470 338 TLEVYPSLNATPGTYNV 354 (513)
T ss_pred EEEEecCCCCCCCceeE
Confidence 9999977 56999953
No 105
>PF14445 Prok-RING_2: Prokaryotic RING finger family 2
Probab=30.48 E-value=8.6 Score=31.53 Aligned_cols=34 Identities=32% Similarity=0.658 Sum_probs=24.4
Q ss_pred ceecCCCCC-CCc-------cccceecCCC--CCcchhhhhhhh
Q 007185 379 GVRCDGCGV-HPI-------TGPRFKSKVK--DDYDLCSICFAA 412 (614)
Q Consensus 379 GV~CDgC~~-~pI-------~G~RYKCsvC--~DyDLC~~C~a~ 412 (614)
.+.||-|.. .|+ .-.||-|+.| +.|-+|-.|-..
T Consensus 7 ry~CDLCn~~~p~~~LRQCvlCGRWaC~sCW~deYY~CksC~Gi 50 (57)
T PF14445_consen 7 RYSCDLCNSSHPISELRQCVLCGRWACNSCWQDEYYTCKSCNGI 50 (57)
T ss_pred hHhHHhhcccCcHHHHHHHhhhchhhhhhhhhhhHhHHHhhhch
Confidence 367899864 243 3457999999 568889999754
No 106
>PF15000 TUSC2: Tumour suppressor candidate 2
Probab=29.54 E-value=21 Score=33.31 Aligned_cols=9 Identities=67% Similarity=1.272 Sum_probs=7.9
Q ss_pred EEecCCCCE
Q 007185 54 TYVDEDGDI 62 (614)
Q Consensus 54 kY~DeDGD~ 62 (614)
-|.|||||+
T Consensus 53 ~y~DeDGdl 61 (111)
T PF15000_consen 53 MYFDEDGDL 61 (111)
T ss_pred eeEcCCcch
Confidence 489999997
No 107
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=29.39 E-value=1.9e+02 Score=27.83 Aligned_cols=37 Identities=22% Similarity=0.430 Sum_probs=30.5
Q ss_pred CCEEEEEEEEecCCCCceEEEEEEEECCCCCccCCeE
Q 007185 545 EGEIDIAVDFTAPELPGRYISYWRMSSPSGVKFGQRV 581 (614)
Q Consensus 545 GeevdVSV~L~AP~~pG~yiSyWRL~tpdG~~FG~~L 581 (614)
.+...+.|.+..|-++|.|+--||..+.||..-+-.+
T Consensus 84 ~~~~~l~v~l~~~L~aG~Y~v~WrvvS~DGH~v~G~~ 120 (127)
T COG2372 84 QNHTQLEVPLPQPLKAGVYTVDWRVVSSDGHVVKGSI 120 (127)
T ss_pred cCCcEEEecCcccCCCCcEEEEEEEEecCCcEeccEE
Confidence 3336688999999999999999999999998755443
No 108
>COG4815 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.30 E-value=2.1e+02 Score=27.83 Aligned_cols=58 Identities=14% Similarity=0.312 Sum_probs=38.9
Q ss_pred CCCEEEEEEEEecCCCCceEEEEEEEECCCC--CccCC-----eEEEEEEEecCCcchhhhHHHHh
Q 007185 544 VEGEIDIAVDFTAPELPGRYISYWRMSSPSG--VKFGQ-----RVWVLIQVLRALESIAISFEAYA 602 (614)
Q Consensus 544 PGeevdVSV~L~AP~~pG~yiSyWRL~tpdG--~~FG~-----~LWv~I~V~~~~~~i~ls~Q~~~ 602 (614)
-+++..+..-=++|.+||-|..+|. .+..| .+|-+ -|-|.|.=+.-.+-+.+++|.+.
T Consensus 36 ~~et~~~R~arkTptK~G~FVafW~-rde~g~n~Pfs~~~~a~~LlI~V~de~~~G~F~Fpre~L~ 100 (145)
T COG4815 36 EGETWHVRTARKTPTKPGAFVAFWQ-RDEGGQNQPFSDDGMAAGLLIFVIDEVLRGVFRFPREHLA 100 (145)
T ss_pred cccEEEEEecccCCCCCceEEEEEE-eCCCCCcCCCCcccccCeeEEEEEccccceEEEecHHHHH
Confidence 3778888888889999999999996 44555 35763 44333333334466677776544
No 109
>PF02207 zf-UBR: Putative zinc finger in N-recognin (UBR box); InterPro: IPR003126 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The N-end rule-based degradation signal, which targets a protein for ubiquitin-dependent proteolysis, comprises a destabilising amino-terminal residue and a specific internal lysine residue. This entry describes a putative zinc finger in N-recognin, a recognition component of the N-end rule pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0004842 ubiquitin-protein ligase activity, 0008270 zinc ion binding; PDB: 3NY1_B 3NIS_F 3NIM_A 3NIK_A 3NII_A 3NIH_A 3NIL_D 3NIN_B 3NIJ_A 3NIT_A ....
Probab=29.29 E-value=33 Score=28.91 Aligned_cols=33 Identities=12% Similarity=0.201 Sum_probs=23.1
Q ss_pred cceecCCCCC---cchhhhhhhh-CCCCcceEEecCC
Q 007185 393 PRFKSKVKDD---YDLCSICFAA-MGSEADYIRIDRP 425 (614)
Q Consensus 393 ~RYKCsvC~D---yDLC~~C~a~-~~~~H~~~ki~~P 425 (614)
.-|+|..|.. .-+|..||+. -+..|.+..+...
T Consensus 12 ~~y~C~tC~~~~~~~iC~~CF~~~~H~gH~~~~~~~~ 48 (71)
T PF02207_consen 12 IFYRCLTCSLDESSGICEECFANSCHEGHRVVYYRSS 48 (71)
T ss_dssp EEEEETTTBSSTT-BBEHHHHCTSGGGGSSEEEEE--
T ss_pred EEEECccCCCCCCEEEchhhCCCCCcCCCcEEEEEeC
Confidence 4588888854 7789999877 4668988776554
No 110
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=28.77 E-value=43 Score=25.96 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=18.5
Q ss_pred ccCceecCCCCCCCc---cccceecCCCC
Q 007185 376 FHKGVRCDGCGVHPI---TGPRFKSKVKD 401 (614)
Q Consensus 376 vH~GV~CDgC~~~pI---~G~RYKCsvC~ 401 (614)
+.....|+.|+ ..| ...-|+|..|.
T Consensus 8 ~~~~~~C~~C~-~~i~g~~~~g~~C~~C~ 35 (53)
T PF00130_consen 8 FSKPTYCDVCG-KFIWGLGKQGYRCSWCG 35 (53)
T ss_dssp SSSTEB-TTSS-SBECSSSSCEEEETTTT
T ss_pred CCCCCCCcccC-cccCCCCCCeEEECCCC
Confidence 45678999999 567 56788998885
No 111
>PF09544 DUF2381: Protein of unknown function (DUF2381); InterPro: IPR011754 This family consists of at least 8 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. The function is unknown.
Probab=28.48 E-value=1.9e+02 Score=31.04 Aligned_cols=73 Identities=16% Similarity=0.334 Sum_probs=46.0
Q ss_pred CcEEEEEEEEe-ccCCCCC-CCcEEEEecCCCCCCCCceeeeccCCCCCCCCEEEEEEEEecCCC--CceEEEEEEEECC
Q 007185 497 TPFTKIWRMRN-TGNLAWP-RGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPEL--PGRYISYWRMSSP 572 (614)
Q Consensus 497 t~FtKtWrLrN-~Gt~~WP-~G~~L~fvgGd~m~~~~sv~~~ipv~~v~PGeevdVSV~L~AP~~--pG~yiSyWRL~tp 572 (614)
..---.++|+| .|...|- .+-+|.-..|..+.. ..+..-...+.||++..|-|..-+|.. .|.|. -+|...
T Consensus 202 ~~vav~v~l~N~~g~~PW~~~~A~L~g~~G~~lr~---~~V~~~~~~i~PG~~grVvVe~e~~~~~~~~~ft--Lel~~~ 276 (289)
T PF09544_consen 202 GWVAVVVTLRNLSGQPPWTPGEARLTGPSGEPLRA---LAVRWQEGPIAPGGSGRVVVEAEAPAFSAGGPFT--LELWDA 276 (289)
T ss_pred CeEEEEEEEECCCCCCCceeeEEEEECCCCCccee---eeeecccCccCCCCceeEEEEecCCCcCCCCcEE--EEEEcC
Confidence 33445678999 8999995 356666444433321 112222346899999999999887743 36666 455566
Q ss_pred CC
Q 007185 573 SG 574 (614)
Q Consensus 573 dG 574 (614)
+|
T Consensus 277 dG 278 (289)
T PF09544_consen 277 DG 278 (289)
T ss_pred CC
Confidence 66
No 112
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=28.44 E-value=1.8e+02 Score=24.40 Aligned_cols=66 Identities=12% Similarity=0.163 Sum_probs=43.5
Q ss_pred EEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceEEE
Q 007185 8 KVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRI 84 (614)
Q Consensus 8 Kvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L~i 84 (614)
|||.-.. +.|.+.+.++ -+..+|+.+|++.+++++ .+..|-|.-. -|.|+.-|.++=.+.-..+.+
T Consensus 2 ~vk~~~G-~~~~l~v~~~----~TV~~lK~~I~~~~gi~~-~~q~Li~~G~-----~L~D~~~l~~~~i~~~~tv~~ 67 (70)
T cd01794 2 KVRLSTG-KDVKLSVSSK----DTVGQLKKQLQAAEGVDP-CCQRWFFSGK-----LLTDKTRLQETKIQKDYVVQV 67 (70)
T ss_pred eEEcCCC-CEEEEEECCc----ChHHHHHHHHHHHhCCCH-HHeEEEECCe-----ECCCCCCHHHcCCCCCCEEEE
Confidence 4444332 5678887643 488899999999999854 5678878543 377887777742234444443
No 113
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=28.25 E-value=25 Score=38.49 Aligned_cols=30 Identities=17% Similarity=0.444 Sum_probs=25.1
Q ss_pred cCCCCCCCccccceecCCCCCcchhhhhhhh
Q 007185 382 CDGCGVHPITGPRFKSKVKDDYDLCSICFAA 412 (614)
Q Consensus 382 CDgC~~~pI~G~RYKCsvC~DyDLC~~C~a~ 412 (614)
|-+|+-....+.||+|..|.++ ||..|-.-
T Consensus 333 Cf~C~~~~~~~~~y~C~~Ck~~-FCldCDv~ 362 (378)
T KOG2807|consen 333 CFACQGELLSSGRYRCESCKNV-FCLDCDVF 362 (378)
T ss_pred eeeeccccCCCCcEEchhccce-eeccchHH
Confidence 9999656678899999999977 99999543
No 114
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=28.02 E-value=6e+02 Score=29.55 Aligned_cols=79 Identities=23% Similarity=0.243 Sum_probs=55.7
Q ss_pred eeEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceEE
Q 007185 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLR 83 (614)
Q Consensus 4 ~lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L~ 83 (614)
.+.|-||..++---|.+. . |-+.-+|+.+|+..|+.. -+.++|-|... .|-|++.|..+=.+-..++.
T Consensus 15 ~irV~Vkt~~dk~~~~V~--~----~ssV~qlKE~I~~~f~a~-~dqlvLIfaGr-----ILKD~dTL~~~gI~Dg~TvH 82 (493)
T KOG0010|consen 15 LIRVTVKTPKDKYEVNVA--S----DSSVLQLKELIAQRFGAP-PDQLVLIYAGR-----ILKDDDTLKQYGIQDGHTVH 82 (493)
T ss_pred eeEEEEecCCcceeEecc--c----chHHHHHHHHHHHhcCCC-hhHeeeeecCc-----cccChhhHHHcCCCCCcEEE
Confidence 467889999994444444 2 346778999999999885 56889999876 34577777775457677777
Q ss_pred EEEEecCCccC
Q 007185 84 IDVHLNNDKFG 94 (614)
Q Consensus 84 i~V~l~~~~~~ 94 (614)
+......+..+
T Consensus 83 LVik~~~~~~~ 93 (493)
T KOG0010|consen 83 LVIKSQPRPTG 93 (493)
T ss_pred EEeccCCCCCC
Confidence 76665544444
No 115
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=27.86 E-value=1.2e+02 Score=28.87 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=21.8
Q ss_pred CCCCCCCCEEEEEE-EEecCCCCceEE
Q 007185 539 ADGVPVEGEIDIAV-DFTAPELPGRYI 564 (614)
Q Consensus 539 v~~v~PGeevdVSV-~L~AP~~pG~yi 564 (614)
-++|+||+++.|.+ .++-|...|.|.
T Consensus 96 ~~PV~pG~tv~V~l~~v~NP~~~G~Y~ 122 (146)
T PF10989_consen 96 DEPVPPGTTVTVVLSPVRNPRSGGTYQ 122 (146)
T ss_pred CCCCCCCCEEEEEEEeeeCCCCCCeEE
Confidence 34689999999999 688899988885
No 116
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=27.61 E-value=1.4e+02 Score=28.35 Aligned_cols=69 Identities=20% Similarity=0.184 Sum_probs=40.7
Q ss_pred eeCCCCcEEEEEEEEeccCCCCCCCcEEEEecCCCCCC--CCceee---eccCCCCCCCCEEEEEEEEecCCCCceEEEE
Q 007185 492 MMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSD--GVSVEI---EVPADGVPVEGEIDIAVDFTAPELPGRYISY 566 (614)
Q Consensus 492 ~V~Pgt~FtKtWrLrN~Gt~~WP~G~~L~fvgGd~m~~--~~sv~~---~ipv~~v~PGeevdVSV~L~AP~~pG~yiSy 566 (614)
.+.||+. .-|||-|.|... +.-..++|..|.. .+-.++ .+..-.+.|||.++|-|++.. .+|.|.-.
T Consensus 63 ~v~~g~~--~rlRliNa~~~~----~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~--~~g~y~i~ 134 (159)
T PF00394_consen 63 KVKPGER--YRLRLINAGAST----SFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQ--PPGNYWIR 134 (159)
T ss_dssp EEETTTE--EEEEEEEESSS-----BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECS--CSSEEEEE
T ss_pred EEcCCcE--EEEEEEeccCCe----eEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCC--CCCeEEEE
Confidence 6788887 469999988853 2333456655431 121111 111114689999999998844 48877544
Q ss_pred EE
Q 007185 567 WR 568 (614)
Q Consensus 567 WR 568 (614)
=+
T Consensus 135 ~~ 136 (159)
T PF00394_consen 135 AS 136 (159)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 117
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=26.55 E-value=2e+02 Score=23.81 Aligned_cols=57 Identities=26% Similarity=0.401 Sum_probs=38.4
Q ss_pred eEEEEe-eCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchh-HHHH
Q 007185 5 MVIKVK-YGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDD-LCDV 74 (614)
Q Consensus 5 lviKvk-~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~D-L~~a 74 (614)
|.||.- .|.. +.+.+.. +.+.++|+.+|++.+.++ .++..|.|... .|.||.. |.++
T Consensus 1 l~v~~~~~g~~---~~l~v~~----~~TV~~lK~~I~~~~gip-~~~q~Li~~Gk-----~L~D~~~~L~~~ 59 (71)
T cd01796 1 ITVYTARSETT---FSLDVDP----DLELENFKALCEAESGIP-ASQQQLIYNGR-----ELVDNKRLLALY 59 (71)
T ss_pred CEEEECCCCCE---EEEEECC----cCCHHHHHHHHHHHhCCC-HHHeEEEECCe-----EccCCcccHHHc
Confidence 456776 5553 5677653 478899999999999995 46778888533 4455544 4443
No 118
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=26.28 E-value=1.9e+02 Score=28.91 Aligned_cols=67 Identities=13% Similarity=0.235 Sum_probs=44.8
Q ss_pred eeCCCCcEEEEEEEEeccCCCCCCCcEEEEecCCCCCC-----CCceeeeccCCCCCCCCEEEEEEEEecCCCCceEE
Q 007185 492 MMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSD-----GVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYI 564 (614)
Q Consensus 492 ~V~Pgt~FtKtWrLrN~Gt~~WP~G~~L~fvgGd~m~~-----~~sv~~~ipv~~v~PGeevdVSV~L~AP~~pG~yi 564 (614)
.+..|+.++-+..|.|.|..+ =+.+...+ |.+.. ... ....-.+.++||+.+..++.++ |.+.|.|.
T Consensus 33 ~~v~g~~v~V~~~iyN~G~~~---A~dV~l~D-~~fp~~~F~lvsG-~~s~~~~~i~pg~~vsh~~vv~-p~~~G~f~ 104 (181)
T PF05753_consen 33 YLVEGEDVTVTYTIYNVGSSA---AYDVKLTD-DSFPPEDFELVSG-SLSASWERIPPGENVSHSYVVR-PKKSGYFN 104 (181)
T ss_pred cccCCcEEEEEEEEEECCCCe---EEEEEEEC-CCCCccccEeccC-ceEEEEEEECCCCeEEEEEEEe-eeeeEEEE
Confidence 566788999999999999863 34444454 22211 000 0111223589999999999998 89999985
No 119
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=26.03 E-value=3.7e+02 Score=22.02 Aligned_cols=70 Identities=24% Similarity=0.285 Sum_probs=44.1
Q ss_pred eEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCC-CCCCcceEEEecCCCCEEEecCchhHHHHHHccCceEE
Q 007185 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNF-PHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLR 83 (614)
Q Consensus 5 lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l-~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L~ 83 (614)
+.||.--| +.|.+.+.. +.+..+|+.+|++.+++ .+-.+..|.|. |- .|.|+.-|.++=.+.-..|.
T Consensus 3 i~vk~~~g---~~~~l~v~~----~~TV~~lK~~i~~~~~i~~~~~~q~L~~~---G~--~L~d~~~L~~~~i~~~~~i~ 70 (77)
T cd01805 3 ITFKTLKQ---QTFPIEVDP----DDTVAELKEKIEEEKGCDYPPEQQKLIYS---GK--ILKDDTTLEEYKIDEKDFVV 70 (77)
T ss_pred EEEEeCCC---CEEEEEECC----CCcHHHHHHHHHHhhCCCCChhHeEEEEC---CE--EccCCCCHHHcCCCCCCEEE
Confidence 44555444 456777653 35788999999999987 13557888885 44 44577777774233344454
Q ss_pred EEE
Q 007185 84 IDV 86 (614)
Q Consensus 84 i~V 86 (614)
+.|
T Consensus 71 ~~~ 73 (77)
T cd01805 71 VMV 73 (77)
T ss_pred EEE
Confidence 443
No 120
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=25.49 E-value=3.2e+02 Score=24.02 Aligned_cols=22 Identities=18% Similarity=0.569 Sum_probs=15.8
Q ss_pred CCCCCEEEEEEEEecCCCCceEEEEEEE
Q 007185 542 VPVEGEIDIAVDFTAPELPGRYISYWRM 569 (614)
Q Consensus 542 v~PGeevdVSV~L~AP~~pG~yiSyWRL 569 (614)
+.||++.++ .|.+ +|.| .||+.
T Consensus 64 ~~pG~t~~~--tF~~---~G~y-~y~C~ 85 (99)
T TIGR02656 64 NSPGESYEV--TFST---PGTY-TFYCE 85 (99)
T ss_pred cCCCCEEEE--EeCC---CEEE-EEEcC
Confidence 689999766 5543 8988 66654
No 121
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=25.40 E-value=1.3e+02 Score=28.09 Aligned_cols=30 Identities=13% Similarity=0.200 Sum_probs=26.2
Q ss_pred CCCCCCEEEEEEEEecCCC--CceEEEEEEEE
Q 007185 541 GVPVEGEIDIAVDFTAPEL--PGRYISYWRMS 570 (614)
Q Consensus 541 ~v~PGeevdVSV~L~AP~~--pG~yiSyWRL~ 570 (614)
.|+|+++..|+++++.|.+ .|...+=|++.
T Consensus 88 tl~~~~sk~V~~~i~~P~~~f~G~ilGGi~~~ 119 (121)
T PF06030_consen 88 TLPPNESKTVTFTIKMPKKAFDGIILGGIYFS 119 (121)
T ss_pred EECCCCEEEEEEEEEcCCCCcCCEEEeeEEEE
Confidence 3789999999999999977 99998888764
No 122
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=24.75 E-value=39 Score=25.08 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=18.2
Q ss_pred cCceecCCCCCCCcccc--ceecCCCC
Q 007185 377 HKGVRCDGCGVHPITGP--RFKSKVKD 401 (614)
Q Consensus 377 H~GV~CDgC~~~pI~G~--RYKCsvC~ 401 (614)
+....|+.|+ ..|.|. .|+|..|.
T Consensus 9 ~~~~~C~~C~-~~i~~~~~~~~C~~C~ 34 (49)
T smart00109 9 KKPTKCCVCR-KSIWGSFQGLRCSWCK 34 (49)
T ss_pred CCCCCccccc-cccCcCCCCcCCCCCC
Confidence 5567899999 577774 68888883
No 123
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=24.54 E-value=1.1e+02 Score=32.15 Aligned_cols=40 Identities=15% Similarity=0.319 Sum_probs=27.9
Q ss_pred cceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCC
Q 007185 14 TLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGD 61 (614)
Q Consensus 14 dlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD 61 (614)
.+-++++-|. +|....+-+.|.. |..+..+.++|.|++|+
T Consensus 136 ~~i~ipVAHg-EGr~~~~~~~l~~-------l~~ngqvvfrY~d~~G~ 175 (231)
T COG0047 136 EVIPIPVAHG-EGRYYADDETLAE-------LEENGQVVFRYVDNNGE 175 (231)
T ss_pred ceEEEEEeec-ceeEEccHHHHHH-------HhhCCeEEEEEecCCCc
Confidence 6777787776 4566666433322 23578899999999999
No 124
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=24.35 E-value=1.7e+02 Score=26.18 Aligned_cols=34 Identities=26% Similarity=0.438 Sum_probs=24.0
Q ss_pred CCCCCEEEEEEEEecCC----CCc-eEEEEEEEECCCCC
Q 007185 542 VPVEGEIDIAVDFTAPE----LPG-RYISYWRMSSPSGV 575 (614)
Q Consensus 542 v~PGeevdVSV~L~AP~----~pG-~yiSyWRL~tpdG~ 575 (614)
|+||++.+|+|.|..|. .-| -|.+|=+|...+|.
T Consensus 66 V~ag~s~~v~vti~~p~~~~~~~~~~~eG~I~~~~~~~~ 104 (112)
T PF06280_consen 66 VPAGQSKTVTVTITPPSGLDASNGPFYEGFITFKSSDGE 104 (112)
T ss_dssp E-TTEEEEEEEEEE--GGGHHTT-EEEEEEEEEESSTTS
T ss_pred ECCCCEEEEEEEEEehhcCCcccCCEEEEEEEEEcCCCC
Confidence 68999999999999887 334 45677788887775
No 125
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=24.25 E-value=1.9e+02 Score=24.43 Aligned_cols=60 Identities=18% Similarity=0.245 Sum_probs=41.4
Q ss_pred EEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHH
Q 007185 6 VIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDV 74 (614)
Q Consensus 6 viKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a 74 (614)
.|.|||++. +|.+.++. +-+.++|..+|++..+++++ ..-|-|.---|= .+.|+..|.++
T Consensus 2 ~i~vk~~g~--~~~v~v~~----~~Tv~~lK~~i~~~tgvp~~-~QKLi~~~~~Gk--~l~D~~~L~~~ 61 (74)
T cd01813 2 PVIVKWGGQ--EYSVTTLS----EDTVLDLKQFIKTLTGVLPE-RQKLLGLKVKGK--PAEDDVKISAL 61 (74)
T ss_pred EEEEEECCE--EEEEEECC----CCCHHHHHHHHHHHHCCCHH-HEEEEeecccCC--cCCCCcCHHHc
Confidence 578888884 46666653 35888999999999998655 556666100143 47788888875
No 126
>PF12969 DUF3857: Domain of Unknown Function with PDB structure (DUF3857); InterPro: IPR024618 This domain is based on the first domain of the PDB structure 3KD4 (residues 1-228). It is structurally similar to domains in other hydrolases, eg. M1 family aminopeptidase, despite lack of any significant sequence similarity. The domain is N-terminal to a transglutaminase domain, which is found in many proteins known to have transglutaminase activity. The function of this domain is unknown. ; PDB: 3KD4_A.
Probab=23.14 E-value=4.8e+02 Score=24.34 Aligned_cols=50 Identities=16% Similarity=0.182 Sum_probs=25.8
Q ss_pred eccCCCCCCCCEEEEEEEE--ecCCCCceEEEEEEEECCCCCccCCeEEEEEEEecC
Q 007185 536 EVPADGVPVEGEIDIAVDF--TAPELPGRYISYWRMSSPSGVKFGQRVWVLIQVLRA 590 (614)
Q Consensus 536 ~ipv~~v~PGeevdVSV~L--~AP~~pG~yiSyWRL~tpdG~~FG~~LWv~I~V~~~ 590 (614)
.+.++.|.+|..++++.+. ..|..+|.+...|.+...- ...+..++|..|
T Consensus 84 ~~~~p~v~~GdiIe~~y~~~~~~p~~~~~~~~~~~f~~~~-----pv~~~~~~v~~P 135 (177)
T PF12969_consen 84 VFAFPDVRVGDIIEYSYTIKSKNPYFPGYFSDSFYFQSSI-----PVRRSRFTVIVP 135 (177)
T ss_dssp EEE--S--TT-EEEEEEEEEE-TTS-SS-EEEEE---SS-------EEEEEEEEEEE
T ss_pred EEEcCCCCCCcEEEEEEEEEecCCccCCccccEEEeccCC-----ceeeEEEEEEeC
Confidence 4666789999999998765 4566788888888877411 455566666543
No 127
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=23.09 E-value=1.9e+02 Score=23.63 Aligned_cols=66 Identities=20% Similarity=0.332 Sum_probs=44.2
Q ss_pred EEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceEEE
Q 007185 6 VIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRI 84 (614)
Q Consensus 6 viKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L~i 84 (614)
.||.-.|.. +.+.+.. +.+..+|+.+|++.++++ .++..|-|.-. . |.|+.-|.++=.+.-..|.+
T Consensus 2 ~vk~~~g~~---~~~~v~~----~~tV~~lK~~i~~~~gi~-~~~q~Li~~G~---~--L~d~~~l~~~~i~~~stl~l 67 (70)
T cd01798 2 YVRTNTGHT---FPVEVDP----DTDIKQLKEVVAKRQGVP-PDQLRVIFAGK---E--LRNTTTIQECDLGQQSILHA 67 (70)
T ss_pred EEEcCCCCE---EEEEECC----CChHHHHHHHHHHHHCCC-HHHeEEEECCe---E--CCCCCcHHHcCCCCCCEEEE
Confidence 456555553 5677654 358889999999999985 56788888743 3 66776666642344455544
No 128
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=23.07 E-value=2.3e+02 Score=23.45 Aligned_cols=69 Identities=23% Similarity=0.339 Sum_probs=46.3
Q ss_pred eEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceEEE
Q 007185 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRI 84 (614)
Q Consensus 5 lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L~i 84 (614)
+.||.-.|.. +.+++.. +-+..+|+++|++.+++++ ++..|-|. |-. |.|+.-|.++=.+....|.+
T Consensus 3 i~vk~~~G~~---~~l~v~~----~~tV~~lK~~i~~~~gi~~-~~q~L~~~---G~~--L~d~~~L~~~~i~~~~~l~l 69 (74)
T cd01807 3 LTVKLLQGRE---CSLQVSE----KESVSTLKKLVSEHLNVPE-EQQRLLFK---GKA--LADDKRLSDYSIGPNAKLNL 69 (74)
T ss_pred EEEEeCCCCE---EEEEECC----CCcHHHHHHHHHHHHCCCH-HHeEEEEC---CEE--CCCCCCHHHCCCCCCCEEEE
Confidence 5666666653 4566643 3588899999999999964 57777786 333 67777777753455556655
Q ss_pred EE
Q 007185 85 DV 86 (614)
Q Consensus 85 ~V 86 (614)
.+
T Consensus 70 ~~ 71 (74)
T cd01807 70 VV 71 (74)
T ss_pred EE
Confidence 44
No 129
>cd00912 ML The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of unknown function in plants, animals and fungi. These single-domain proteins form two anti-parallel beta-pleated sheets stabilized by three disulfide bonds and with an accessible central hydrophobic cavity, and are predicted to mediate diverse biological functions through interaction with specific lipids.
Probab=22.88 E-value=1.8e+02 Score=26.61 Aligned_cols=35 Identities=17% Similarity=0.198 Sum_probs=28.0
Q ss_pred CCCCCCEEEEEEEEecCC--CC-ceEEEEEEEECCCCC
Q 007185 541 GVPVEGEIDIAVDFTAPE--LP-GRYISYWRMSSPSGV 575 (614)
Q Consensus 541 ~v~PGeevdVSV~L~AP~--~p-G~yiSyWRL~tpdG~ 575 (614)
++.+||.+.++..+.-|. .| +.|.-.|+|.+.+|.
T Consensus 81 Pl~~G~~~~~~~~~~v~~~~~P~~~~~v~~~l~~~~~~ 118 (127)
T cd00912 81 PLRKGQQYSYAKTVNVPEFTIPTIEYQVVLEDVTDKGE 118 (127)
T ss_pred CcCCCCEEEEEEEEecCcccCCCeeEEEEEEEEcCCCC
Confidence 478999999988887774 44 689999999986553
No 130
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=22.73 E-value=1.2e+02 Score=25.72 Aligned_cols=40 Identities=18% Similarity=0.325 Sum_probs=26.8
Q ss_pred cceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecC
Q 007185 14 TLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDE 58 (614)
Q Consensus 14 dlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~De 58 (614)
.-||+.+.++.+ -.+.++.....+-|+|+++ +..|+|...
T Consensus 5 ~~rr~~vkvtp~----~~l~~VL~eac~k~~l~~~-~~~L~h~~k 44 (65)
T PF11470_consen 5 NFRRFKVKVTPN----TTLNQVLEEACKKFGLDPS-SYDLKHNNK 44 (65)
T ss_dssp TS-EEEE---TT----SBHHHHHHHHHHHTT--GG-G-EEEETTE
T ss_pred CCcEEEEEECCC----CCHHHHHHHHHHHcCCCcc-ceEEEECCE
Confidence 358999998854 4778899999999999766 999999764
No 131
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=21.81 E-value=3.3e+02 Score=29.18 Aligned_cols=87 Identities=15% Similarity=0.144 Sum_probs=45.7
Q ss_pred eeCCCCcEEEEEEEEeccCCCCCC----C--cEEEEecCCCCCCCCceeeeccCCCCCCCCEEEEEEEEecCCCCceEEE
Q 007185 492 MMAPSTPFTKIWRMRNTGNLAWPR----G--SQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYIS 565 (614)
Q Consensus 492 ~V~Pgt~FtKtWrLrN~Gt~~WP~----G--~~L~fvgGd~m~~~~sv~~~ipv~~v~PGeevdVSV~L~AP~~pG~yiS 565 (614)
.+.+|+. .-|||.|.|...+-. | -.++..+|..+..... .+..-.+.|||..+|-|++ +. ||.
T Consensus 205 ~v~~G~~--~RlRiiNa~~~~~~~~~~~g~~~~~v~~DG~~~~~~~~---~~~~~~i~PG~R~dv~v~~--~~-pG~--- 273 (311)
T TIGR02376 205 ALTAGVG--ERVLFVHSQPNRDSRPHLIGGHGDYVWVTGKFANPPNR---DVETWFIPGGSAAAALYTF--EQ-PGV--- 273 (311)
T ss_pred ccccCCc--EEEEEEcCCCCCCCCCeEecCCceEEEECCcccCCCCC---CcceEEECCCceEEEEEEe--CC-CeE---
Confidence 5677764 589999998754311 1 2234555654443220 0111137899999977765 43 684
Q ss_pred EEEEECCCCCccCCeEEEEEEEec
Q 007185 566 YWRMSSPSGVKFGQRVWVLIQVLR 589 (614)
Q Consensus 566 yWRL~tpdG~~FG~~LWv~I~V~~ 589 (614)
||-.+.+....+....--.|.|+.
T Consensus 274 y~~~~~~~~~~~~~g~~~~i~~~g 297 (311)
T TIGR02376 274 YAYVDHNLIEAFEKGAAAQVKVEG 297 (311)
T ss_pred EEEECcHHHHHHhCCCEEEEEECC
Confidence 555555433322222334445554
No 132
>PRK02710 plastocyanin; Provisional
Probab=21.78 E-value=3.3e+02 Score=24.92 Aligned_cols=60 Identities=17% Similarity=0.355 Sum_probs=32.2
Q ss_pred CCCceeCCCCcEEEEEEEEeccCCCCCCCcEEEEecCCCCCCCCceeeeccCCCCCCCCEEEEEEEEecCCCCceEEEEE
Q 007185 488 LDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYW 567 (614)
Q Consensus 488 pDGT~V~Pgt~FtKtWrLrN~Gt~~WP~G~~L~fvgGd~m~~~~sv~~~ipv~~v~PGeevdVSV~L~AP~~pG~yiSyW 567 (614)
|+--.|++|..+ +|+ |.+.. |.+ +.+-+++.+... .+ .+.||++.. +.|.. +|.| .||
T Consensus 46 P~~i~v~~Gd~V--~~~--N~~~~--~H~--v~~~~~~~~~~~-----~~---~~~pg~t~~--~tF~~---~G~y-~y~ 103 (119)
T PRK02710 46 PSTLTIKAGDTV--KWV--NNKLA--PHN--AVFDGAKELSHK-----DL---AFAPGESWE--ETFSE---AGTY-TYY 103 (119)
T ss_pred CCEEEEcCCCEE--EEE--ECCCC--Cce--EEecCCcccccc-----cc---ccCCCCEEE--EEecC---CEEE-EEE
Confidence 344467777764 464 66543 333 444443323211 11 257899866 44543 8999 566
Q ss_pred EE
Q 007185 568 RM 569 (614)
Q Consensus 568 RL 569 (614)
+-
T Consensus 104 C~ 105 (119)
T PRK02710 104 CE 105 (119)
T ss_pred cC
Confidence 54
No 133
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.39 E-value=58 Score=30.57 Aligned_cols=31 Identities=26% Similarity=0.449 Sum_probs=22.6
Q ss_pred eecCCCCCCCcc------------ccceecCCCCCcchhhhhhhh
Q 007185 380 VRCDGCGVHPIT------------GPRFKSKVKDDYDLCSICFAA 412 (614)
Q Consensus 380 V~CDgC~~~pI~------------G~RYKCsvC~DyDLC~~C~a~ 412 (614)
..|-+|.. ++. ..||+|..|. -+||..|-.-
T Consensus 56 ~~C~~C~~-~f~~~~~~~~~~~~~~~~y~C~~C~-~~FC~dCD~f 98 (112)
T TIGR00622 56 RFCFGCQG-PFPKPPVSPFDELKDSHRYVCAVCK-NVFCVDCDVF 98 (112)
T ss_pred CcccCcCC-CCCCcccccccccccccceeCCCCC-Cccccccchh
Confidence 45999984 332 3599999997 4599999543
No 134
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=20.57 E-value=3.8e+02 Score=23.99 Aligned_cols=71 Identities=10% Similarity=0.251 Sum_probs=40.2
Q ss_pred eecCCCceeCCCCcEEEEEEEEeccCCCCCCCcEEEEecCCCCCCCCceeeeccCCCCCCCCEEEEE--EEEecCCCCce
Q 007185 485 VNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIA--VDFTAPELPGR 562 (614)
Q Consensus 485 VTipDGT~V~Pgt~FtKtWrLrN~Gt~~WP~G~~L~fvgGd~m~~~~sv~~~ipv~~v~PGeevdVS--V~L~AP~~pG~ 562 (614)
|+|.+.... +=+--.+.|+|++.. | .+..|.|+=. +.. .| -|.|||+..-+ +.|.+| .|.
T Consensus 18 I~I~N~~~~-~vqL~sR~W~I~d~~------g-~~~~V~G~GV--VG~----~P--~L~pGe~f~Y~S~~~l~t~--~G~ 79 (90)
T PF04379_consen 18 IRIENHSDE-SVQLLSRHWIITDAD------G-HVEEVEGEGV--VGQ----QP--VLAPGESFEYTSGCPLSTP--SGS 79 (90)
T ss_dssp EEEEE-SSS--EEEEEEEEEEEETT------S--EEEEEEESB--TTB--------EE-TTEEEEEEEEEEESSS--EEE
T ss_pred EEEEECCCC-CEEEEccEEEEEeCC------C-CEEEEECCce--Ecc----Cc--eECCCCcEEEcCCCCcCCC--CEE
Confidence 444443322 345567899999742 2 4556776522 222 22 37899987775 456554 598
Q ss_pred EEEEEEEECCC
Q 007185 563 YISYWRMSSPS 573 (614)
Q Consensus 563 yiSyWRL~tpd 573 (614)
-..++.|.+.|
T Consensus 80 M~G~y~~~~~~ 90 (90)
T PF04379_consen 80 MEGSYTMVDED 90 (90)
T ss_dssp EEEEEEEEET-
T ss_pred EEEEEEEEECc
Confidence 88999887643
No 135
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=20.56 E-value=3.3e+02 Score=22.25 Aligned_cols=67 Identities=16% Similarity=0.286 Sum_probs=42.1
Q ss_pred eeEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceEE
Q 007185 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLR 83 (614)
Q Consensus 4 ~lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L~ 83 (614)
++.||...|. +.+.+.. +.+..+|+.+|++.+++ +-+.+.|-|. |- .|.|+.-|.++=.+.-..|.
T Consensus 2 ~i~vk~~~g~----~~l~v~~----~~TV~~lK~~I~~~~~i-~~~~~~Li~~---Gk--~L~d~~tL~~~~i~~~stl~ 67 (71)
T cd01808 2 KVTVKTPKDK----EEIEIAE----DASVKDFKEAVSKKFKA-NQEQLVLIFA---GK--ILKDTDTLTQHNIKDGLTVH 67 (71)
T ss_pred EEEEEcCCCC----EEEEECC----CChHHHHHHHHHHHhCC-CHHHEEEEEC---Ce--EcCCCCcHHHcCCCCCCEEE
Confidence 3667755442 3455532 34788999999999987 4567888883 43 35677767764223334444
Q ss_pred E
Q 007185 84 I 84 (614)
Q Consensus 84 i 84 (614)
+
T Consensus 68 l 68 (71)
T cd01808 68 L 68 (71)
T ss_pred E
Confidence 4
No 136
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=20.29 E-value=61 Score=25.07 Aligned_cols=26 Identities=23% Similarity=0.590 Sum_probs=19.7
Q ss_pred ccCceecCCCCCC---Cccc-cceecCCCC
Q 007185 376 FHKGVRCDGCGVH---PITG-PRFKSKVKD 401 (614)
Q Consensus 376 vH~GV~CDgC~~~---pI~G-~RYKCsvC~ 401 (614)
+-.|+.|-.|+.. .|.+ .+|+|..|.
T Consensus 15 W~~g~~CP~Cg~~~~~~~~~~~~~~C~~C~ 44 (46)
T PF12760_consen 15 WPDGFVCPHCGSTKHYRLKTRGRYRCKACR 44 (46)
T ss_pred CCCCCCCCCCCCeeeEEeCCCCeEECCCCC
Confidence 4457889999852 4666 899999984
No 137
>PF12744 ATG19_autophagy: Autophagy protein Atg19, Atg8-binding; InterPro: IPR024543 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are sequestered into double-membrane vesicles to form the autophagosome. The contents of the autophagosome are delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. In contrast to autophagy, the cytoplasm to vacuole transport (Cvt) pathway is a highly selective process that involves the sequestration of at least two specific cargos that are resident vacuolar hydrolases: aminopeptidase I (Ape1) and alpha-mannosidase (Ams1). These proteins are sequestered within a double-membrane vesicle, termed a Cvt vesicle. The Cvt vesicle is fairly consistent in size, and is much smaller than the autophagosome, being 140-160 nm in diameter. The genes involved in autophagy in yeast are termed autophagy-related (Atg) genes. Autophagy and the Cvt pathway are topologically and mechanistically similar and share most of the Atg components []. The precursor of Ape1 (prApe1) is sequestered within either Cvt vesicles or autophagosomes, depending on the nutrient conditions, and delivered to the vacuole. Atg19 is a peripheral membrane protein with differing binding sites for both Ape1 and Ams1. Atg19 plays a central role in cargo sorting and transport to the vacuole by linking Ams1 and prApe1 to Atg8 and Atg11 []. This entry represents the C-terminal region of Atg19 and homologue Atg34 (Yol083wp) [, ]. The Atg8-binding region is thought to be in the very C-terminal residues [].; PDB: 2KZK_A 2ZPN_H 2KZB_A.
Probab=20.24 E-value=1.4e+02 Score=31.31 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=15.5
Q ss_pred EEEEEEEeccCCCCCCCcEEEE
Q 007185 500 TKIWRMRNTGNLAWPRGSQLVW 521 (614)
Q Consensus 500 tKtWrLrN~Gt~~WP~G~~L~f 521 (614)
.=+++|+|.|+.+-|.||+|+|
T Consensus 94 ~L~F~L~N~g~~~lpg~l~Lvf 115 (236)
T PF12744_consen 94 SLTFTLYNNGDSTLPGNLTLVF 115 (236)
T ss_dssp EEEEEEEE-SSS---SS-EEEB
T ss_pred eEEEEEEcCCCcccCCCceEEE
Confidence 3678999999999999999999
Done!