Query 007185
Match_columns 614
No_of_seqs 269 out of 755
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 19:19:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007185.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007185hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kkc_A Sequestosome-1; P62, PB 99.6 2E-15 6.7E-20 133.9 11.0 84 4-87 5-100 (102)
2 1wmh_B Partitioning defective- 99.6 4.3E-15 1.5E-19 128.0 10.6 80 3-87 5-84 (86)
3 1vd2_A Protein kinase C, IOTA 99.6 4.1E-15 1.4E-19 129.0 10.5 80 3-88 5-88 (89)
4 2ktr_A Sequestosome-1; autopha 99.6 6.3E-15 2.1E-19 133.4 10.8 85 1-87 18-115 (117)
5 2e5r_A Dystrobrevin alpha; ZZ 99.5 2.7E-14 9.3E-19 116.4 5.2 53 371-424 4-62 (63)
6 2fc7_A ZZZ3 protein; structure 99.5 2.9E-14 1E-18 121.7 5.5 58 370-427 12-78 (82)
7 2dip_A Zinc finger SWIM domain 99.4 4.4E-14 1.5E-18 124.4 4.3 54 373-426 25-79 (98)
8 2bkf_A Zinc-finger protein NBR 99.3 1.9E-11 6.4E-16 105.5 10.9 80 1-87 3-85 (87)
9 1tot_A CREB-binding protein; z 99.2 3.1E-12 1.1E-16 100.7 3.5 49 376-426 3-51 (52)
10 1wj6_A KIAA0049 protein, RSGI 99.2 1.7E-11 5.8E-16 108.1 8.6 80 1-87 11-93 (101)
11 1q1o_A Cell division control p 99.2 5.3E-11 1.8E-15 104.8 7.6 67 4-76 5-83 (98)
12 1pqs_A Cell division control p 98.9 2.4E-09 8.2E-14 90.6 5.8 48 29-76 11-62 (77)
13 1oey_J P40-PHOX, neutrophil cy 98.8 1.4E-08 4.6E-13 90.0 7.7 45 30-77 33-77 (107)
14 1oey_A P67-PHOX, neutrophil cy 98.0 2.6E-05 8.8E-10 66.9 8.6 73 5-86 6-80 (83)
15 1ip9_A BEM1 protein; ubiquitin 97.2 0.00089 3E-08 57.7 7.6 70 4-84 12-82 (85)
16 2npt_A Dual specificity mitoge 96.3 0.01 3.6E-07 52.0 7.5 60 7-73 19-78 (106)
17 2cu1_A Mitogen-activated prote 92.7 1.3 4.4E-05 39.4 11.3 77 4-91 8-89 (103)
18 1v5n_A PDI-like hypothetical p 85.9 0.33 1.1E-05 41.6 2.2 31 380-412 48-78 (89)
19 2jrh_A Mitogen-activated prote 85.5 10 0.00036 33.0 11.2 81 1-92 1-86 (94)
20 2ys4_A Hydrocephalus-inducing 84.7 1.2 4.1E-05 39.1 5.3 72 492-574 36-107 (122)
21 1wx7_A Ubiquilin 3; ubiquitin- 83.0 9.5 0.00032 32.5 10.1 76 4-91 17-92 (106)
22 1t0y_A Tubulin folding cofacto 82.9 3.7 0.00013 36.4 7.8 79 1-84 3-83 (122)
23 2e6j_A Hydin protein; PAPD, st 81.5 3.9 0.00013 34.6 7.1 89 493-589 22-111 (112)
24 1v6e_A Cytoskeleton-associated 80.4 4.4 0.00015 34.1 7.0 74 5-83 8-83 (95)
25 1wjn_A Tubulin-folding protein 80.3 4.9 0.00017 33.9 7.3 43 29-72 32-76 (97)
26 2hj8_A Interferon-induced 17 k 76.9 9.7 0.00033 31.3 8.0 77 1-88 1-77 (88)
27 2qsv_A Uncharacterized protein 76.3 5.2 0.00018 38.6 7.0 71 492-571 130-204 (220)
28 2eel_A Cell death activator CI 75.2 6.2 0.00021 34.3 6.4 59 5-75 10-68 (91)
29 4b6w_A Tubulin-specific chaper 73.4 3 0.0001 35.0 3.9 56 29-85 24-81 (86)
30 1d4b_A CIDE B, human cell deat 70.6 6.6 0.00022 35.9 5.7 57 6-75 37-93 (122)
31 2kut_A Uncharacterized protein 67.9 12 0.00041 33.9 6.8 66 493-560 12-77 (122)
32 2kjr_A CG11242; UBL, ubiquitin 66.3 33 0.0011 29.2 9.0 74 5-84 16-92 (95)
33 2npt_B Mitogen-activated prote 65.8 36 0.0012 30.0 9.1 74 4-88 20-98 (100)
34 1wh3_A 59 kDa 2'-5'-oligoadeny 65.0 40 0.0014 27.0 9.0 74 4-88 7-80 (87)
35 3mtn_B UBA80, ubcep1, ubiquiti 65.0 11 0.00036 30.0 5.4 77 3-90 2-78 (85)
36 2c60_A Human mitogen-activated 64.7 47 0.0016 29.7 9.7 73 4-87 31-108 (111)
37 3phx_B Ubiquitin-like protein 64.6 16 0.00055 28.9 6.4 76 1-87 1-76 (79)
38 3idu_A Uncharacterized protein 64.4 13 0.00044 33.6 6.4 79 484-575 22-101 (127)
39 2xzz_A Protein-glutamine gamma 64.3 23 0.0008 30.8 7.8 71 485-564 10-80 (102)
40 2kj6_A Tubulin folding cofacto 64.1 26 0.00088 30.1 8.0 76 4-84 14-92 (97)
41 1w8o_A Bacterial sialidase; 3D 63.7 24 0.00083 38.0 9.6 82 486-575 363-446 (601)
42 1f2r_I Inhibitor of caspase-ac 63.4 13 0.00045 32.8 6.0 61 5-75 19-79 (100)
43 1yqb_A Ubiquilin 3; structural 63.2 33 0.0011 29.1 8.4 74 3-88 21-94 (100)
44 2l7r_A Ubiquitin-like protein 62.2 15 0.00053 30.6 6.1 70 4-86 19-88 (93)
45 2i1s_A Hypothetical protein; m 61.1 32 0.0011 32.6 8.8 40 3-48 7-50 (188)
46 1v5o_A 1700011N24RIK protein; 60.4 53 0.0018 27.7 9.3 72 5-86 8-83 (102)
47 1wxv_A BAG-family molecular ch 60.0 49 0.0017 27.1 8.8 75 2-84 5-81 (92)
48 1ibx_B Chimera of IGG binding 59.4 7.9 0.00027 36.3 4.1 42 31-75 83-124 (145)
49 1v5t_A 8430435I17RIK protein; 57.9 40 0.0014 27.8 7.9 69 4-84 7-79 (90)
50 3n3k_B Ubiquitin; hydrolase, p 56.9 13 0.00046 29.5 4.7 76 4-90 3-78 (85)
51 2cal_A Rusticyanin; iron respi 55.9 94 0.0032 28.4 10.8 87 491-587 63-153 (154)
52 1wx8_A Riken cDNA 4931431F19; 55.7 24 0.00082 29.1 6.2 71 4-86 17-87 (96)
53 2i1j_A Moesin; FERM, coiled-co 54.9 26 0.00088 39.0 8.0 67 1-73 1-67 (575)
54 2dzi_A Ubiquitin-like protein 54.2 25 0.00087 27.6 5.8 69 5-84 8-76 (81)
55 1ef1_A Moesin; membrane, FERM 53.1 34 0.0012 33.7 7.8 63 5-73 2-64 (294)
56 2uyz_B Small ubiquitin-related 51.7 52 0.0018 25.9 7.3 75 1-87 1-75 (79)
57 1j8c_A Ubiquitin-like protein 51.4 31 0.0011 30.6 6.5 72 4-87 32-103 (125)
58 2kan_A Uncharacterized protein 51.1 73 0.0025 26.6 8.5 72 5-88 16-88 (94)
59 1v86_A DNA segment, CHR 7, way 50.7 41 0.0014 28.2 6.9 68 4-84 17-84 (95)
60 3isy_A Bsupi, intracellular pr 49.4 34 0.0012 30.9 6.5 24 541-564 73-96 (120)
61 2l0d_A Cell surface protein; s 47.9 48 0.0016 29.5 7.1 65 492-565 14-80 (114)
62 2pjh_A Protein NPL4, nuclear p 47.5 12 0.00041 31.0 2.9 48 1-55 1-48 (80)
63 3o27_A Putative uncharacterize 47.0 13 0.00044 30.8 2.9 31 35-65 29-59 (68)
64 3k9o_B Ubiquitin, UBB+1; E2-25 46.3 35 0.0012 27.9 5.7 74 6-90 3-76 (96)
65 2f1e_A Protein APAG; APAG prot 45.6 82 0.0028 28.6 8.4 64 497-577 46-111 (127)
66 2bwf_A Ubiquitin-like protein 44.8 48 0.0017 25.6 6.1 58 5-74 5-62 (77)
67 1wgd_A Homocysteine-responsive 44.2 84 0.0029 25.7 7.8 73 5-87 8-85 (93)
68 2kk8_A Uncharacterized protein 44.1 59 0.002 26.6 6.7 70 5-86 13-82 (84)
69 1wy8_A NP95-like ring finger p 43.8 1.2E+02 0.0042 24.2 9.7 76 4-89 7-83 (89)
70 1we7_A SF3A1 protein; structur 43.1 1.2E+02 0.0041 26.0 8.9 76 4-89 25-109 (115)
71 3a9j_A Ubiquitin; protein comp 41.4 51 0.0017 25.2 5.7 61 17-87 12-72 (76)
72 2vrw_B P95VAV, VAV1, proto-onc 41.0 14 0.00049 38.2 3.1 36 376-413 354-392 (406)
73 3v6c_B Ubiquitin; structural g 40.6 40 0.0014 27.5 5.2 71 5-86 18-88 (91)
74 1xvs_A Protein APAG; MCSG APC2 40.0 94 0.0032 28.2 7.9 64 497-577 45-110 (126)
75 3nis_A E3 ubiquitin-protein li 39.4 20 0.00067 30.5 3.1 48 375-424 4-55 (82)
76 3dbh_I NEDD8; cell cycle, acti 39.3 39 0.0013 26.9 4.8 71 5-86 13-83 (88)
77 2klc_A Ubiquilin-1; ubiquitin- 39.1 79 0.0027 26.7 6.9 70 5-86 26-95 (101)
78 1xq4_A Protein APAG; all beta 39.0 88 0.003 28.9 7.6 64 497-577 50-115 (139)
79 3rfr_A PMOB; membrane, oxidore 38.8 91 0.0031 33.6 8.7 46 541-587 111-157 (419)
80 1wf9_A NPL4 family protein; be 38.3 64 0.0022 27.6 6.3 47 5-57 8-54 (107)
81 2d8v_A Zinc finger FYVE domain 37.9 16 0.00056 30.1 2.2 43 381-427 10-57 (67)
82 4b6d_A RAC GTPase-activating p 37.8 14 0.00049 29.4 1.9 25 376-401 16-42 (61)
83 1x1m_A Ubiquitin-like protein 37.7 1.2E+02 0.004 25.8 7.8 76 5-86 13-98 (107)
84 1tza_A APAG protein, SOR45; st 37.4 85 0.0029 28.8 7.2 34 542-577 75-110 (134)
85 2c9r_A COPC, copper resistance 36.9 26 0.00089 30.3 3.6 31 546-577 63-93 (102)
86 1qhq_A Protein (auracyanin); e 36.4 2.2E+02 0.0074 24.8 10.0 37 541-583 99-136 (140)
87 2gim_A Plastocyanin; beta shee 36.3 44 0.0015 27.6 4.8 26 541-571 66-91 (106)
88 2kzr_A Ubiquitin thioesterase 35.9 83 0.0028 25.6 6.3 61 7-74 3-64 (86)
89 2kd0_A LRR repeats and ubiquit 35.4 66 0.0023 26.2 5.7 60 3-74 11-70 (85)
90 4hci_A Cupredoxin 1; structura 34.8 68 0.0023 26.5 5.8 56 488-564 27-82 (100)
91 4hcn_B Polyubiquitin, ubiquiti 34.6 41 0.0014 28.1 4.4 72 5-87 23-94 (98)
92 3m62_B UV excision repair prot 34.4 26 0.00091 29.9 3.2 69 7-87 4-73 (106)
93 2ojr_A Ubiquitin; lanthide-bin 34.3 84 0.0029 26.8 6.4 73 4-87 35-107 (111)
94 1yew_A Particulate methane mon 33.4 1.5E+02 0.0051 31.7 9.2 44 542-586 84-128 (382)
95 4dwf_A HLA-B-associated transc 32.7 1.3E+02 0.0045 24.1 7.1 72 4-87 5-76 (90)
96 1lyq_A PCOC copper resistance 32.7 41 0.0014 29.2 4.1 30 547-577 66-95 (104)
97 2fnj_B Transcription elongatio 32.1 1.9E+02 0.0064 25.9 8.4 71 5-87 3-80 (118)
98 1ndd_A NEDD8, protein (ubiquit 32.0 83 0.0028 24.0 5.5 60 17-86 12-71 (76)
99 1wgg_A Ubiquitin carboxyl-term 31.1 1.2E+02 0.004 25.5 6.6 58 4-74 7-65 (96)
100 2dzm_A FAS-associated factor 1 31.0 1.2E+02 0.0041 26.1 6.8 69 5-84 10-78 (100)
101 1we6_A Splicing factor, putati 30.2 66 0.0023 27.5 5.0 75 4-87 27-103 (111)
102 3ny3_A E3 ubiquitin-protein li 30.1 24 0.00082 29.4 2.1 33 392-424 15-51 (75)
103 3cvb_A Plastocyanin; cupredoxi 29.9 73 0.0025 26.1 5.1 25 542-571 66-90 (105)
104 1h4r_A Merlin; FERM, neurofibr 28.5 1.1E+02 0.0037 30.5 7.0 65 2-73 20-84 (314)
105 1wia_A Hypothetical ubiquitin- 28.5 1E+02 0.0035 25.2 5.8 68 5-86 8-76 (95)
106 2kvz_A ISPE; structural genomi 28.1 37 0.0013 28.9 3.0 24 44-69 2-25 (85)
107 2enz_A NPKC-theta, protein kin 27.9 39 0.0013 26.6 2.9 27 374-401 18-47 (65)
108 2rb6_A Uncharacterized protein 27.6 87 0.003 25.4 4.9 46 1-69 1-46 (61)
109 1xg8_A Hypothetical protein SA 27.5 58 0.002 29.2 4.2 57 31-91 31-88 (111)
110 1ttn_A DC-UBP, dendritic cell- 27.3 1.5E+02 0.0051 25.0 6.7 70 5-86 24-94 (106)
111 1uh6_A Ubiquitin-like 5; beta- 27.1 1.2E+02 0.004 26.4 6.0 67 5-84 29-97 (100)
112 1cuo_A Protein (azurin ISO-2); 27.0 2.9E+02 0.0098 24.5 8.8 26 541-571 86-113 (129)
113 1mby_A SAK, serine/threonine k 27.0 18 0.00061 31.4 0.8 39 52-90 43-82 (88)
114 3qij_A Protein 4.1; cytoskelet 26.9 1.4E+02 0.0048 29.8 7.5 67 3-75 16-83 (296)
115 2row_A RHO-associated protein 26.9 29 0.00099 29.5 2.1 36 374-411 30-70 (84)
116 2jn0_A Hypothetical lipoprotei 26.9 70 0.0024 25.9 4.2 46 1-69 1-46 (61)
117 2aan_A Auracyanin A; cupredoxi 25.8 2.6E+02 0.009 24.3 8.3 20 541-563 100-119 (139)
118 4fbj_B NEDD8; effector-HOST ta 25.4 69 0.0024 26.1 4.1 65 16-90 11-75 (88)
119 2iaa_C Azurin; quinoprotein, t 25.3 1.2E+02 0.0041 27.1 5.9 25 541-568 85-111 (128)
120 3ky9_A Proto-oncogene VAV; cal 25.1 32 0.0011 37.7 2.5 38 374-413 524-564 (587)
121 2k57_A Putative lipoprotein; s 25.1 1.3E+02 0.0045 24.3 5.5 46 1-69 1-46 (61)
122 2ffw_A Midline-1; B-BOX, ring 25.0 40 0.0014 27.7 2.5 35 379-414 30-65 (78)
123 1wju_A NEDD8 ultimate buster-1 24.5 2.9E+02 0.0098 23.9 8.0 65 16-91 30-94 (100)
124 1yx5_B Ubiquitin; proteasome, 24.4 1.3E+02 0.0046 24.7 5.8 61 17-87 12-72 (98)
125 2dyb_A Neutrophil cytosol fact 24.4 64 0.0022 33.0 4.5 38 31-71 268-305 (341)
126 1vjj_A Protein-glutamine gluta 24.0 2.1E+02 0.0071 32.9 8.9 71 494-570 605-675 (692)
127 1wyw_B Ubiquitin-like protein 24.0 2.3E+02 0.0079 23.4 7.2 72 5-87 22-93 (97)
128 3t9w_A Small laccase, multi-co 23.7 96 0.0033 31.1 5.6 91 493-594 194-292 (299)
129 3tas_A Small laccase, multi-co 23.7 56 0.0019 32.9 3.9 91 493-594 178-276 (313)
130 3qbt_B Inositol polyphosphate 23.7 1.2E+02 0.0042 27.2 5.8 61 492-556 38-100 (140)
131 3vta_A Cucumisin; subtilisin-l 23.6 3.4E+02 0.012 30.0 10.5 95 482-589 519-619 (621)
132 1nep_A EPV20, BNPC2, epididyma 23.3 1.4E+02 0.005 26.3 6.1 35 541-575 81-117 (130)
133 3vdz_A Ubiquitin-40S ribosomal 22.9 1.6E+02 0.0056 25.1 6.2 73 4-87 35-107 (111)
134 1ptq_A Protein kinase C delta 22.6 45 0.0015 24.5 2.2 26 375-401 7-35 (50)
135 2faz_A Ubiquitin-like containi 22.5 1.3E+02 0.0046 23.3 5.2 70 5-86 5-75 (78)
136 3zyq_A Hepatocyte growth facto 22.4 47 0.0016 32.4 2.9 32 380-412 165-197 (226)
137 1dvp_A HRS, hepatocyte growth 22.0 42 0.0015 32.3 2.5 33 379-412 161-194 (220)
138 1sdd_B Coagulation factor V; c 21.6 1.5E+02 0.0052 32.8 7.1 85 492-588 242-326 (647)
139 3ay2_A Lipid modified azurin p 21.5 4.1E+02 0.014 24.9 9.1 26 541-571 125-151 (167)
140 2q3z_A Transglutaminase 2; tra 21.3 2.1E+02 0.0071 32.8 8.2 71 494-570 598-669 (687)
141 2wyq_A HHR23A, UV excision rep 21.0 1.7E+02 0.0059 22.9 5.6 71 5-86 6-79 (85)
142 1sif_A Ubiquitin; hydrophobic 20.9 1.2E+02 0.004 24.7 4.7 62 16-87 20-81 (88)
143 1v2y_A 3300001G02RIK protein; 20.4 1.4E+02 0.0049 25.9 5.3 78 5-91 8-99 (105)
144 2daf_A FLJ35834 protein; hypot 20.4 4.7E+02 0.016 23.5 10.5 75 3-87 14-88 (118)
145 1uel_A HHR23B, UV excision rep 20.4 3.1E+02 0.011 22.4 7.2 69 5-86 3-74 (95)
146 2yuu_A NPKC-delta, protein kin 20.3 47 0.0016 27.4 2.1 27 374-401 23-52 (83)
No 1
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=99.61 E-value=2e-15 Score=133.90 Aligned_cols=84 Identities=20% Similarity=0.339 Sum_probs=68.9
Q ss_pred eeEEEEee------CCcceeeeeecCCCCCc-----cccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHH
Q 007185 4 TMVIKVKY------GDTLRRFNARVDENEKL-----DLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLC 72 (614)
Q Consensus 4 ~lviKvk~------gddlRRf~~~~~~n~~~-----~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~ 72 (614)
.++|||.| ++++|||.++++.+-.. -.++..|+.+|+++|..-.+.+|+|+|+|||||+|||.+|+||.
T Consensus 5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~~~~f~l~Y~DedGDlItiSsDeEL~ 84 (102)
T 2kkc_A 5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALRPGGFQAHYRAERGDLVAFSSDEELT 84 (102)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEECTTCCEEEECSHHHHH
T ss_pred eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccccCCCcEEEEEECCCCCEEEecCHHHHH
Confidence 48999999 68999999997532111 14788999999999953347789999999999999999999999
Q ss_pred HHH-HccCceEEEEEE
Q 007185 73 DVM-RQRLKFLRIDVH 87 (614)
Q Consensus 73 ~a~-~q~l~~L~i~V~ 87 (614)
.|+ ..+...|||.|+
T Consensus 85 ~Al~~~~~~~lRlyVk 100 (102)
T 2kkc_A 85 MAMSYVKDDIFRIYIK 100 (102)
T ss_dssp HHHHHCCSSEEEEEEE
T ss_pred HHHHhcCCCeEEEEEE
Confidence 998 435568899886
No 2
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=99.59 E-value=4.3e-15 Score=128.01 Aligned_cols=80 Identities=24% Similarity=0.389 Sum_probs=69.4
Q ss_pred ceeEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceE
Q 007185 3 STMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFL 82 (614)
Q Consensus 3 ~~lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L 82 (614)
+.++||+|||.++|||++.-+. ...+.+|..+++++|+| .+.+|+|+|+|+|||+|+|.+|++|..|+...--.|
T Consensus 5 ~~l~vKskf~aE~RRFs~d~~~----~~~fe~f~~lv~~lh~L-~~~~f~i~Y~D~dGDLlpInnDdnl~~Al~~a~plL 79 (86)
T 1wmh_B 5 SIVEVKSKFDAEFRRFALPRAS----VSGFQEFSRLLRAVHQI-PGLDVLLGYTDAHGDLLPLTNDDSLHRALASGPPPL 79 (86)
T ss_dssp CEEEEEEEETTEEEEEEEEGGG----CCCHHHHHHHHHHHTTC-TTCCCEEEEECTTSCEEECCSHHHHHHHTTSSSSCE
T ss_pred CEEEEEeecCCeeeEeEccCCC----CCCHHHHHHHHHHHcCC-CCCCEEEEEECCCCCEeeecCHHHHHHHHHhCCCcE
Confidence 5699999999999999998542 35788899999999999 688999999999999999999999999994322268
Q ss_pred EEEEE
Q 007185 83 RIDVH 87 (614)
Q Consensus 83 ~i~V~ 87 (614)
||.|+
T Consensus 80 Rl~Iq 84 (86)
T 1wmh_B 80 RLLVQ 84 (86)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88886
No 3
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=99.59 E-value=4.1e-15 Score=128.95 Aligned_cols=80 Identities=21% Similarity=0.376 Sum_probs=71.7
Q ss_pred ceeEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHH----cc
Q 007185 3 STMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMR----QR 78 (614)
Q Consensus 3 ~~lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~----q~ 78 (614)
..+.|||.|+||+|+|.++. ++++.+|..||+++|++..+..|+|||+|||||.|||.+|+||..||+ .+
T Consensus 5 ~~vkvK~~~~gdi~~~~v~~------~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~itisSd~EL~eAl~l~~~n~ 78 (89)
T 1vd2_A 5 SQVRVKAYYRGDIMITHFEP------SISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYELNK 78 (89)
T ss_dssp SCEEEEEESSSCEEEEEECT------TCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEECCSHHHHHHHHHHHHHTS
T ss_pred CeEEEEEEeCCeEEEEECCC------CCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCcccccCHHHHHHHHHHHHccC
Confidence 35899999999999999983 478889999999999999899999999999999999999999999873 46
Q ss_pred CceEEEEEEe
Q 007185 79 LKFLRIDVHL 88 (614)
Q Consensus 79 l~~L~i~V~l 88 (614)
-..|.|-|+.
T Consensus 79 ~~~l~ihvf~ 88 (89)
T 1vd2_A 79 DSELLIHVFP 88 (89)
T ss_dssp CCCEEEEEEE
T ss_pred CCCEEEEEcc
Confidence 6778888874
No 4
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=99.58 E-value=6.3e-15 Score=133.44 Aligned_cols=85 Identities=22% Similarity=0.364 Sum_probs=68.9
Q ss_pred CCceeEEEEeeC------CcceeeeeecCCCCCc-----cccHHHHHHHHHHhc-CCCCCCcceEEEecCCCCEEEecCc
Q 007185 1 MESTMVIKVKYG------DTLRRFNARVDENEKL-----DLDIDGLRAKIKSLF-NFPHDSDLTLTYVDEDGDIVTLVDD 68 (614)
Q Consensus 1 m~~~lviKvk~g------ddlRRf~~~~~~n~~~-----~l~~~~L~~~i~~~F-~l~~~~~~~lkY~DeDGD~VTl~Dd 68 (614)
|.+ ++|||.|. +++|||.++++.+-.+ ..++..|+.+|+++| .| .+.+|+|+|+|||||+|||.+|
T Consensus 18 ~~~-l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L-~~~~f~l~YkDEdGDlItISsD 95 (117)
T 2ktr_A 18 MGS-LTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPAL-RPGGFQAHYRAERGDLVAFSSD 95 (117)
T ss_dssp --C-EEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTS-CSSCEEEEEECTTCCEEEECSH
T ss_pred ccc-EEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHcccc-CCCcEEEEEECCCCCEEEecCH
Confidence 445 99999996 7999999997532111 248889999999999 55 4678999999999999999999
Q ss_pred hhHHHHHHc-cCceEEEEEE
Q 007185 69 DDLCDVMRQ-RLKFLRIDVH 87 (614)
Q Consensus 69 ~DL~~a~~q-~l~~L~i~V~ 87 (614)
+||..|+.. +...|||.|+
T Consensus 96 eEL~~Al~~~~~~~lRlyVk 115 (117)
T 2ktr_A 96 EELTMAMSYVKDDIFRIYIK 115 (117)
T ss_dssp HHHHHHHHHCCSSEEEEEEE
T ss_pred HHHHHHHHhcCCCeEEEEEE
Confidence 999999843 5567888886
No 5
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=2.7e-14 Score=116.36 Aligned_cols=53 Identities=25% Similarity=0.568 Sum_probs=46.9
Q ss_pred ccCCcccCceecCCCCCCCccccceecCCCCCcchhhhhhhh------CCCCcceEEecC
Q 007185 371 ALMGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAA------MGSEADYIRIDR 424 (614)
Q Consensus 371 ~~~~vvH~GV~CDgC~~~pI~G~RYKCsvC~DyDLC~~C~a~------~~~~H~~~ki~~ 424 (614)
+...+.|. +.||+|+..||.|.||||++|+|||||+.||.. |.++|+|.+|.+
T Consensus 4 ~~~~v~H~-~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~~~~~H~~~H~~~~~~t 62 (63)
T 2e5r_A 4 GSSGVFHP-VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKEYTS 62 (63)
T ss_dssp CSSSCCSC-SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCCCCSSSCTTCCEEEECC
T ss_pred CcCCceeC-CCCcCCCCcceecceEEecCCCCchhHHHHHhCCCcCCCCCCCCCEEEEeC
Confidence 45678888 999999988999999999999999999999987 467899988864
No 6
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=99.47 E-value=2.9e-14 Score=121.73 Aligned_cols=58 Identities=26% Similarity=0.497 Sum_probs=51.5
Q ss_pred CccCCcccCceecCCCCCCCccccceecCCCCC---cchhhhhhhh------CCCCcceEEecCCcC
Q 007185 370 DALMGMFHKGVRCDGCGVHPITGPRFKSKVKDD---YDLCSICFAA------MGSEADYIRIDRPVH 427 (614)
Q Consensus 370 ~~~~~vvH~GV~CDgC~~~pI~G~RYKCsvC~D---yDLC~~C~a~------~~~~H~~~ki~~Pv~ 427 (614)
.....++|.++.||+|...||+|.||||++|+| ||||+.||.. |.++|+|..|.+|..
T Consensus 12 ~~~~~~~H~~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~~~~~ 78 (82)
T 2fc7_A 12 AESGFVQHVGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRSSG 78 (82)
T ss_dssp SSTTSCEESSCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECSCCC
T ss_pred ccccCCeeCcCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEeeCCCC
Confidence 334578999999999998899999999999999 9999999974 568999999998864
No 7
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=99.44 E-value=4.4e-14 Score=124.39 Aligned_cols=54 Identities=24% Similarity=0.482 Sum_probs=49.0
Q ss_pred CCcccCceecCCCCCCCccccceecCCCCCcchhhhhhhh-CCCCcceEEecCCc
Q 007185 373 MGMFHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAA-MGSEADYIRIDRPV 426 (614)
Q Consensus 373 ~~vvH~GV~CDgC~~~pI~G~RYKCsvC~DyDLC~~C~a~-~~~~H~~~ki~~Pv 426 (614)
..++|.|+.||+|+..||.|.||||++|+|||||+.||.. .|+.|.|++|.+|.
T Consensus 25 ~~~~H~gv~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~~H~~H~f~~i~~~~ 79 (98)
T 2dip_A 25 RLDKHLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSYCHLSHTFTFREKRN 79 (98)
T ss_dssp CCSSCCCCCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTTSGGGSCEEECCSSS
T ss_pred cccccCCCCCcCCCCCCcccCeEECCCCCCccHHHHHHccCCCCCCCeeEecCCC
Confidence 4679999999999988999999999999999999999988 34799999998874
No 8
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=99.28 E-value=1.9e-11 Score=105.46 Aligned_cols=80 Identities=18% Similarity=0.391 Sum_probs=70.6
Q ss_pred CCceeEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHH---Hc
Q 007185 1 MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVM---RQ 77 (614)
Q Consensus 1 m~~~lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~---~q 77 (614)
|+..+++||.|.++.+||.+.. .-+.++++|..|+...|+|. +|.|||+|||||.|+|..+.++.+|+ ..
T Consensus 3 ~~~~v~lkV~f~ge~~rf~vs~----~~~~tweel~~mvk~~f~L~---~~~ikY~DEenD~v~i~Sq~E~eEAlkva~k 75 (87)
T 2bkf_A 3 MEPQVTLNVTFKNEIQSFLVSD----PENTTWADIEAMVKVSFDLN---TIQIKYLDEENEEVSINSQGEYEEALKMAVK 75 (87)
T ss_dssp CCCCEEEEEEETTEEEEEEESC----GGGCCHHHHHHHHHHHHTCS---SEEEEEECTTSCEEEECSHHHHHHHHHHHHH
T ss_pred CCceEEEEEEEcCCeeEEEecc----CCCCCHHHHHHHHHHHcCCC---ceEEEEEcCCCCEEEEecHHHHHHHHHHhcc
Confidence 8889999999999999999963 23578899999999999995 89999999999999999999999986 33
Q ss_pred cCceEEEEEE
Q 007185 78 RLKFLRIDVH 87 (614)
Q Consensus 78 ~l~~L~i~V~ 87 (614)
+-+.|++.|.
T Consensus 76 ~~n~L~m~v~ 85 (87)
T 2bkf_A 76 QGNQLQMQVH 85 (87)
T ss_dssp TTTEEEEEEE
T ss_pred CCCEEEEEEe
Confidence 4678998885
No 9
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=99.24 E-value=3.1e-12 Score=100.68 Aligned_cols=49 Identities=20% Similarity=0.467 Sum_probs=43.5
Q ss_pred ccCceecCCCCCCCccccceecCCCCCcchhhhhhhhCCCCcceEEecCCc
Q 007185 376 FHKGVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMGSEADYIRIDRPV 426 (614)
Q Consensus 376 vH~GV~CDgC~~~pI~G~RYKCsvC~DyDLC~~C~a~~~~~H~~~ki~~Pv 426 (614)
-|.++.||+|.. .| |.||||++|+|||||..||....+.|+|.+|..|+
T Consensus 3 ~~~~~~Cd~C~~-~i-g~R~~C~~C~dyDLC~~C~~~~~H~H~m~~~~~~l 51 (52)
T 1tot_A 3 DRFVYTCNECKH-HV-ETRWHCTVCEDYDLCINCYNTKSHTHKMVKWGLGL 51 (52)
T ss_dssp CSSCEEETTTTE-EE-SSEEEESSSSSCEECHHHHHHHCCCSSEEEECSSC
T ss_pred CcCEEECCCCCC-CC-cceEEcCCCCCchhHHHHHhCCCCCCceEEecCCC
Confidence 367899999995 45 99999999999999999999966689999998876
No 10
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=99.24 E-value=1.7e-11 Score=108.12 Aligned_cols=80 Identities=18% Similarity=0.390 Sum_probs=70.3
Q ss_pred CCceeEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHH---Hc
Q 007185 1 MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVM---RQ 77 (614)
Q Consensus 1 m~~~lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~---~q 77 (614)
|+-.+++||.|.++.+||.|... -+.++++|..|+...|+|. +|.|||+|||||.|+|..+.++.+|+ ..
T Consensus 11 m~~~v~lkV~f~ge~~rF~Vs~~----~~~tweel~~mvk~~f~L~---~~~IkY~DEenD~V~i~Sq~E~eEAlkva~k 83 (101)
T 1wj6_A 11 MEPQVTLNVTFKNEIQSFLVSDP----ENTTWADIEAMVKVSFDLN---TIQIKYLDEENEEVSINSQGEYEEALKMAVK 83 (101)
T ss_dssp SCSCEEEEEEETTEEEEEEESCT----TTSCHHHHHHHHHHHHCCS---SBCCEEECTTSCEECCCSHHHHHHHHHHHHH
T ss_pred cCccEEEEEEEcCCeeEEEecCC----CCCCHHHHHHHHHHHcCCC---ceEEEEecCCCCEEEEecHHHHHHHHHHhcc
Confidence 88889999999999999999732 3578889999999999995 89999999999999999999999986 33
Q ss_pred cCceEEEEEE
Q 007185 78 RLKFLRIDVH 87 (614)
Q Consensus 78 ~l~~L~i~V~ 87 (614)
+-+.|++.|.
T Consensus 84 ~~n~L~m~V~ 93 (101)
T 1wj6_A 84 QGNQLQMQVH 93 (101)
T ss_dssp HTSEEEEECC
T ss_pred CCCEEEEEEe
Confidence 4678988874
No 11
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=99.15 E-value=5.3e-11 Score=104.85 Aligned_cols=67 Identities=24% Similarity=0.408 Sum_probs=57.9
Q ss_pred eeEEEEeeC--------CcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCc----ceEEEecCCCCEEEecCchhH
Q 007185 4 TMVIKVKYG--------DTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSD----LTLTYVDEDGDIVTLVDDDDL 71 (614)
Q Consensus 4 ~lviKvk~g--------ddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~----~~lkY~DeDGD~VTl~Dd~DL 71 (614)
.+-|||.|+ +|+|.+.+. .+.+|.+|..||++-|++..+++ +.|||+|||||.|||.+|+||
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~------~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDEdGD~Vtl~sddDl 78 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVE------KVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDW 78 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEEC------TTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECSSSCEEEECSHHHH
T ss_pred cEEEEEEecCcccccccCcEEEEEec------CCCCHHHHHHHHHHHHcCCccccccceeEEEEEcCCCCEEEEcCHHHH
Confidence 378999999 778888877 34688899999999998765556 799999999999999999999
Q ss_pred HHHHH
Q 007185 72 CDVMR 76 (614)
Q Consensus 72 ~~a~~ 76 (614)
..|+.
T Consensus 79 ~~A~e 83 (98)
T 1q1o_A 79 NVAKE 83 (98)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98873
No 12
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=98.85 E-value=2.4e-09 Score=90.59 Aligned_cols=48 Identities=31% Similarity=0.399 Sum_probs=41.9
Q ss_pred cccHHHHHHHHHHhcCCCCC----CcceEEEecCCCCEEEecCchhHHHHHH
Q 007185 29 DLDIDGLRAKIKSLFNFPHD----SDLTLTYVDEDGDIVTLVDDDDLCDVMR 76 (614)
Q Consensus 29 ~l~~~~L~~~i~~~F~l~~~----~~~~lkY~DeDGD~VTl~Dd~DL~~a~~ 76 (614)
+.+|.+|..||++-|++..+ ..+.|||+|||||.|||.+|+||..|+.
T Consensus 11 ~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkDEdGD~Vti~sddDl~~A~~ 62 (77)
T 1pqs_A 11 VWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKE 62 (77)
T ss_dssp CCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEETTTEEEECCSTTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcccccccccceeEEEEEcCCCCEEEEcCHHHHHHHHH
Confidence 46777999999999996432 5699999999999999999999999874
No 13
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=98.76 E-value=1.4e-08 Score=89.95 Aligned_cols=45 Identities=31% Similarity=0.548 Sum_probs=40.8
Q ss_pred ccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHc
Q 007185 30 LDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQ 77 (614)
Q Consensus 30 l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q 77 (614)
-.+.+|..+|++.|+ .+|+.|+|+|+|||+|+|.||+|+..++.+
T Consensus 33 P~ykdLl~lmr~~F~---~~DIaLNYrD~eGDLIrilddeDv~lmi~~ 77 (107)
T 1oey_J 33 PLLKDLLELTRREFQ---REDIALNYRDAEGDLVRLLSDEDVALMVRQ 77 (107)
T ss_dssp CCHHHHHHHHHHHHC---CSSEEEEEECTTSCEEECCSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhc---ccceeeeeecCCCCEEEEcchHHHHHHHHH
Confidence 466789999999999 679999999999999999999999998833
No 14
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=97.96 E-value=2.6e-05 Score=66.94 Aligned_cols=73 Identities=18% Similarity=0.259 Sum_probs=58.0
Q ss_pred eEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecC-CCCEEEecCchhHHHHHHc-cCceE
Q 007185 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDE-DGDIVTLVDDDDLCDVMRQ-RLKFL 82 (614)
Q Consensus 5 lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~De-DGD~VTl~Dd~DL~~a~~q-~l~~L 82 (614)
++|||.|.+++ .|.+. .++++.+|+.||++-|++. .....|.|+|| +|..| |..|+||.+|+.+ +-.+|
T Consensus 6 ~~VKV~~~~tv---airvp----~~~~y~~L~~~l~~kL~l~-~~~~~LsYk~~~s~~~v-i~~d~dl~~aw~~~~n~~L 76 (83)
T 1oey_A 6 YTLKVHYKYTV---VMKTQ----PGLPYSQVRDMVSKKLELR-LEHTKLSYRPRDSNELV-PLSEDSMKDAWGQVKNYCL 76 (83)
T ss_dssp EEEEEESSSEE---EEEEC----TTCCHHHHHHHHHHHTTCC-GGGCCEEECCTTCSSCE-ECCTTTHHHHHTTCBTTEE
T ss_pred EEEEEEEEEEE---EEECC----CCCCHHHHHHHHHHHhCCC-cceeEEEeeCCCCCCee-ccChHHHHHHHHhccCCcE
Confidence 78999999633 55543 4578999999999999996 66899999995 66778 9999999999944 34457
Q ss_pred EEEE
Q 007185 83 RIDV 86 (614)
Q Consensus 83 ~i~V 86 (614)
+|-+
T Consensus 77 tL~C 80 (83)
T 1oey_A 77 TLWC 80 (83)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6655
No 15
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=97.20 E-value=0.00089 Score=57.68 Aligned_cols=70 Identities=21% Similarity=0.260 Sum_probs=56.9
Q ss_pred eeEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecC-CCCEEEecCchhHHHHHHccCceE
Q 007185 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDE-DGDIVTLVDDDDLCDVMRQRLKFL 82 (614)
Q Consensus 4 ~lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~De-DGD~VTl~Dd~DL~~a~~q~l~~L 82 (614)
.+=||+-|.|||=-+.++ .++++.+|+.||..=.++ ++...+.|+|| .|+ -|.+|+||..|| ||-.+|
T Consensus 12 ~~KVK~yy~DDIiAIrvP------~di~~~~L~dKi~~RLk~--~~~~l~~ykde~~g~--~i~sD~dl~~ai-qrn~KL 80 (85)
T 1ip9_A 12 TTKIKFYYKDDIFALMLK------GDTTYKELRSKIAPRIDT--DNFKLQTKLFDGSGE--EIKTDSQVSNII-QAKLKI 80 (85)
T ss_dssp CEEEEECBTTCCEEEEEC------SCCCHHHHHHHHHHHHTS--SCEEEEECCSSSCCS--CCCSHHHHHHHH-HTTCCE
T ss_pred ceEEEEEecCcEEEEECC------CCCCHHHHHHHHHHHhcc--cceEEEEecCCCCCC--cccCHHHHHHHH-HhcCee
Confidence 467999999999666666 358899999999999998 56777888888 788 899999999999 444555
Q ss_pred EE
Q 007185 83 RI 84 (614)
Q Consensus 83 ~i 84 (614)
.|
T Consensus 81 ~l 82 (85)
T 1ip9_A 81 SV 82 (85)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 16
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=96.29 E-value=0.01 Score=52.02 Aligned_cols=60 Identities=22% Similarity=0.345 Sum_probs=44.4
Q ss_pred EEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHH
Q 007185 7 IKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCD 73 (614)
Q Consensus 7 iKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~ 73 (614)
||+.-|+++ --.++ -...|+|.+|...|.+++. .-..--.-|-|||||-||+-.|++|..
T Consensus 19 Ik~p~~g~v---DwaV~--~~~~L~FrDvL~~I~~vmP--~aT~TAFeYEDE~gDRITVRSDeE~kA 78 (106)
T 2npt_A 19 IKIPNSGAV---DWTVH--SGPQLLFRDVLDVIGQVLP--EATTTAFEYEDEDGDRITVRSDEEMKA 78 (106)
T ss_dssp EEETTTEEE---EEEEC--C--CCCHHHHHHHHHHHST--TSCCSEEEEECTTSCEEEECSHHHHHH
T ss_pred EECCCCCcc---ccccC--CcccccHHHHHHHHHHhCc--cceeeeeeeccccCCeeEEcchHHHHH
Confidence 555555655 33332 2468999999999999986 333445689999999999999999985
No 17
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=92.72 E-value=1.3 Score=39.36 Aligned_cols=77 Identities=22% Similarity=0.344 Sum_probs=60.6
Q ss_pred eeEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHH-----cc
Q 007185 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMR-----QR 78 (614)
Q Consensus 4 ~lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~-----q~ 78 (614)
++-||.-|++-=|=+.++- -+.|.+|+.|+.++|.. .+.|.|+|- -=+|-|...+||-.||. .-
T Consensus 8 dvRiKfE~~GEkRIi~f~R------Pv~f~eL~~Kv~~~fGq----~ldL~y~n~-EllIpl~sQeDLDkaIellDrss~ 76 (103)
T 2cu1_A 8 DVRVKFEHRGEKRILQFPR------PVKLEDLRSKAKIAFGQ----SMDLHYTNN-ELVIPLTTQDDLDKAVELLDRSIH 76 (103)
T ss_dssp EEEEEEEETTEEEEEEEES------SCCHHHHHHHHHHHHSS----CEEEEECSS-SSCEECCSHHHHHHHHHHHHHCSS
T ss_pred cEEEEEEecCeEEEEeccC------CccHHHHHHHHHHHhCC----eeeEEEecc-eEEEeccCHHHHHHHHHHHccCCc
Confidence 5789999999877777772 37888999999999986 688999955 45789999999988762 24
Q ss_pred CceEEEEEEecCC
Q 007185 79 LKFLRIDVHLNND 91 (614)
Q Consensus 79 l~~L~i~V~l~~~ 91 (614)
.+.|||.+....+
T Consensus 77 ~kSLrIlL~~~~~ 89 (103)
T 2cu1_A 77 MKSLKILLVINGS 89 (103)
T ss_dssp CCSEEEEEEECCC
T ss_pred ccceEEEEecCCC
Confidence 5678887765543
No 18
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=85.91 E-value=0.33 Score=41.57 Aligned_cols=31 Identities=26% Similarity=0.387 Sum_probs=26.9
Q ss_pred eecCCCCCCCccccceecCCCCCcchhhhhhhh
Q 007185 380 VRCDGCGVHPITGPRFKSKVKDDYDLCSICFAA 412 (614)
Q Consensus 380 V~CDgC~~~pI~G~RYKCsvC~DyDLC~~C~a~ 412 (614)
..||.|+. .+.|.+|+|..| ||+|-..|...
T Consensus 48 ~~C~~C~~-~~~~~~Y~C~~C-~f~lH~~Ca~~ 78 (89)
T 1v5n_A 48 YTCDKCEE-EGTIWSYHCDEC-DFDLHAKCALN 78 (89)
T ss_dssp CCCTTTSC-CCCSCEEECTTT-CCCCCHHHHHC
T ss_pred eEeCCCCC-cCCCcEEEcCCC-CCeEcHHhcCC
Confidence 68999994 589999999999 69998889754
No 19
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=85.51 E-value=10 Score=33.01 Aligned_cols=81 Identities=22% Similarity=0.316 Sum_probs=63.1
Q ss_pred CCceeEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHH-----
Q 007185 1 MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVM----- 75 (614)
Q Consensus 1 m~~~lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~----- 75 (614)
|-.++-||.-|.+.=|=|.+. --+.|.+|+.|++.+|+- .+.|-|+ +.-=+|-|..-+||-.|+
T Consensus 1 ~q~dvRIKfE~~gEKRIi~f~------RPvkf~dl~qkv~~afGq----~ldl~y~-nnEL~iPL~~Q~DLDkAvelLDr 69 (94)
T 2jrh_A 1 MQSDVRIKFEHNGERRIIAFS------RPVKYEDVEHKVTTVFGQ----PLDLHYM-NNELSILLKNQDDLDKAIDILDR 69 (94)
T ss_dssp -CCCEEEEEEETTEEEEEEEC------SSCCHHHHHHHHHHHHCS----SEEEEEE-CSSCEEECCSHHHHHHHHHHHHH
T ss_pred CCCceEEEEEecCceEEEecC------CCccHHHHHHHHHHHhCC----eeeeEEe-cceeEEeccCHHHHHHHHHHhcc
Confidence 667889999999977766666 236788899999999975 5778999 556788899999998766
Q ss_pred HccCceEEEEEEecCCc
Q 007185 76 RQRLKFLRIDVHLNNDK 92 (614)
Q Consensus 76 ~q~l~~L~i~V~l~~~~ 92 (614)
..-++-|||.+......
T Consensus 70 s~~mkSLRIlL~~~~~~ 86 (94)
T 2jrh_A 70 SSSMKSLRILLLSQDRN 86 (94)
T ss_dssp STTTTEEEEEEEECSSC
T ss_pred CccccceEEEEEcCCcc
Confidence 23677899998766543
No 20
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.70 E-value=1.2 Score=39.12 Aligned_cols=72 Identities=22% Similarity=0.250 Sum_probs=50.0
Q ss_pred eeCCCCcEEEEEEEEeccCCCCCCCcEEEEecCCCCCCCCceeeeccCCCCCCCCEEEEEEEEecCCCCceEEEEEEEEC
Q 007185 492 MMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSS 571 (614)
Q Consensus 492 ~V~Pgt~FtKtWrLrN~Gt~~WP~G~~L~fvgGd~m~~~~sv~~~ipv~~v~PGeevdVSV~L~AP~~pG~yiSyWRL~t 571 (614)
.+.-|+.=+|+-.|||.|.. ...+.|..-..|. +.-....|+||+++.|.|.|. |...|.|...-.+..
T Consensus 36 ~~~v~~~~~~~~~l~N~g~~----~~~f~~~~~~~F~------i~P~~g~L~pg~~~~i~V~F~-P~~~g~~~~~l~v~~ 104 (122)
T 2ys4_A 36 TCPVKYSTQKILLVRNIGNK----NAVFHIKTCRPFS------IEPAIGTLNVGESMQLEVEFE-PQSVGDHSGRLIVCY 104 (122)
T ss_dssp SEESSSCEEEEEEEECCSSS----CEEEEEECCTTEE------EESSEEEECTTCEEEEEEEEC-CSSSBCCCCBCEEEE
T ss_pred CeecCCeEEEEEEEEECCCC----CEEEEEecCCCeE------EECCcCEECCCCEEEEEEEEE-cCCCccEEEEEEEEE
Confidence 45667888999999999985 3444444322222 111112478999999999995 999999988777766
Q ss_pred CCC
Q 007185 572 PSG 574 (614)
Q Consensus 572 pdG 574 (614)
.+|
T Consensus 105 ~~g 107 (122)
T 2ys4_A 105 DTG 107 (122)
T ss_dssp SSS
T ss_pred CCC
Confidence 455
No 21
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=82.96 E-value=9.5 Score=32.52 Aligned_cols=76 Identities=18% Similarity=0.251 Sum_probs=51.1
Q ss_pred eeEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceEE
Q 007185 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLR 83 (614)
Q Consensus 4 ~lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L~ 83 (614)
.+.|+|+..+. +|.+.+.. +-+..+|+.+|++.++++ -....|.|. |- .|.|+.-|.++=.+....|.
T Consensus 17 ~m~I~Vk~~~g--~~~l~v~~----~~TV~~LK~~I~~~~gip-~~~qrLi~~---Gk--~L~D~~tL~~~gi~~g~~i~ 84 (106)
T 1wx7_A 17 LIKVTVKTPKD--KEDFSVTD----TCTIQQLKEEISQRFKAH-PDQLVLIFA---GK--ILKDPDSLAQCGVRDGLTVH 84 (106)
T ss_dssp EEEEEEECSSC--EEEEEEET----TCCHHHHHHHHHHHHTCC-TTTEEEEET---TE--ECCTTSCHHHHTCCTTEEEE
T ss_pred eEEEEEEeCCC--cEEEEECC----CCcHHHHHHHHHHHHCcC-hhhEEEEEC---CE--ECCCcCcHHHcCCCCCCEEE
Confidence 35677776553 36677653 357889999999999986 457888885 32 45677777776444556676
Q ss_pred EEEEecCC
Q 007185 84 IDVHLNND 91 (614)
Q Consensus 84 i~V~l~~~ 91 (614)
+.+.+...
T Consensus 85 l~~~~~~~ 92 (106)
T 1wx7_A 85 LVIKRQHR 92 (106)
T ss_dssp EEECCCCC
T ss_pred EEEcCCCC
Confidence 66655443
No 22
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=82.95 E-value=3.7 Score=36.38 Aligned_cols=79 Identities=11% Similarity=0.147 Sum_probs=54.3
Q ss_pred CCceeEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEE-e-cCchhHHHHHHcc
Q 007185 1 MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVT-L-VDDDDLCDVMRQR 78 (614)
Q Consensus 1 m~~~lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VT-l-~Dd~DL~~a~~q~ 78 (614)
|...+.|+|+....-+.+.+.+. .+.+..+|..+|++.++++ -....|.|.+.+|-.+. | .|+.-|.++=.+.
T Consensus 3 m~~~v~l~V~~~~~~~~~e~~v~----~~~TV~~lK~ki~~~~Gip-~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~ 77 (122)
T 1t0y_A 3 MTEVYDLEITTNATDFPMEKKYP----AGMSLNDLKKKLELVVGTT-VDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRD 77 (122)
T ss_dssp CCCEEEEEEEESSCCSCEEEEEE----TTSBHHHHHHHHHHHHCCC-TTTEEEEEECSSSSEEEECCCCSSBTTTTTCCS
T ss_pred CCCEEEEEEEECCCCccEEEEeC----CCCcHHHHHHHHHHHhCCC-HHHeEEEEecCCCccccccCCCcCCHHHCCCCC
Confidence 77778888887654345666664 3468889999999999996 55889999998887663 4 3444455542344
Q ss_pred CceEEE
Q 007185 79 LKFLRI 84 (614)
Q Consensus 79 l~~L~i 84 (614)
-..|.|
T Consensus 78 g~~ihv 83 (122)
T 1t0y_A 78 GYRIHA 83 (122)
T ss_dssp SEEEEE
T ss_pred CCEEEE
Confidence 444443
No 23
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.46 E-value=3.9 Score=34.60 Aligned_cols=89 Identities=9% Similarity=0.074 Sum_probs=55.4
Q ss_pred eCCCCcEEEEEEEEeccCCCCCCCcEEEEecCCC-CCCCCceeeeccCCCCCCCCEEEEEEEEecCCCCceEEEEEEEEC
Q 007185 493 MAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDK-FSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSS 571 (614)
Q Consensus 493 V~Pgt~FtKtWrLrN~Gt~~WP~G~~L~fvgGd~-m~~~~sv~~~ipv~~v~PGeevdVSV~L~AP~~pG~yiSyWRL~t 571 (614)
+.-|+.-+++-+|+|+|.. ...+.++-... .+.. ..+.-+...++||++..|.|.|. |..+|.|...-.+..
T Consensus 22 v~~g~~~~~~~~l~N~g~~----p~~~~~~~~~~~~~~~--f~v~p~~g~i~pg~~~~i~V~f~-~~~~g~f~~~i~v~~ 94 (112)
T 2e6j_A 22 VFTGSAHCYEAILYNKGSI----DALFNMTPPTSALGAC--FVFSPKEGIIEPSGVQAIQISFS-SIILGNFEEEFLVNV 94 (112)
T ss_dssp EESSCCEEEEEEEEECCSS----CEEEEECCCSSHHHHH--CEEESSEEEECTTBCCEEEEEEC-CCCCEEEEEEECEEE
T ss_pred EEECCEEEEEEEEEECCcc----eEEEEEecCCccccCc--EEEECCcCEECCCCEEEEEEEEE-CCCcceEEEEEEEEE
Confidence 4567788999999999996 34444442111 0000 11121222478999999999997 689999987766654
Q ss_pred CCCCccCCeEEEEEEEec
Q 007185 572 PSGVKFGQRVWVLIQVLR 589 (614)
Q Consensus 572 pdG~~FG~~LWv~I~V~~ 589 (614)
+|..--..|.+.=+|..
T Consensus 95 -~g~~~~~~L~i~G~vv~ 111 (112)
T 2e6j_A 95 -NGSPEPVKLTIRGCVIG 111 (112)
T ss_dssp -SSCSSCCCEEEEEEEEC
T ss_pred -CCCCceEEEEEEEEEEC
Confidence 34333355665555543
No 24
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=80.39 E-value=4.4 Score=34.12 Aligned_cols=74 Identities=16% Similarity=0.159 Sum_probs=50.0
Q ss_pred eEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEE-e-cCchhHHHHHHccCceE
Q 007185 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVT-L-VDDDDLCDVMRQRLKFL 82 (614)
Q Consensus 5 lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VT-l-~Dd~DL~~a~~q~l~~L 82 (614)
+.|+|++...-+.+.+.+.. +.+..+|+.+|++.++++ -+...|.|.+.+|-.+. | .|+.-|.++=.+....|
T Consensus 8 v~l~I~~~~~~~~~~~~v~~----~~TV~~lK~ki~~~~gip-~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l 82 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSR----SLTIAEFKCKLELVVGSP-ASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRI 82 (95)
T ss_dssp EEEEEEETTSSSCEEEEECT----TSBHHHHHHHHHHHTCSC-TTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEE
T ss_pred EEEEEEECCCCeeEEEEcCc----cCHHHHHHHHHHHHHCCC-HHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEE
Confidence 66777775543567777753 458889999999999996 55888999988777653 4 44444555423444444
Q ss_pred E
Q 007185 83 R 83 (614)
Q Consensus 83 ~ 83 (614)
.
T Consensus 83 ~ 83 (95)
T 1v6e_A 83 H 83 (95)
T ss_dssp E
T ss_pred E
Confidence 3
No 25
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=80.34 E-value=4.9 Score=33.87 Aligned_cols=43 Identities=19% Similarity=0.313 Sum_probs=31.9
Q ss_pred cccHHHHHHHHHHhcCCCCCCcceEEEecCC-CCEEE-ecCchhHH
Q 007185 29 DLDIDGLRAKIKSLFNFPHDSDLTLTYVDED-GDIVT-LVDDDDLC 72 (614)
Q Consensus 29 ~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeD-GD~VT-l~Dd~DL~ 72 (614)
+++..+|+.+|+++|++++ ..+.|-|.|++ +..+. |.||+--+
T Consensus 32 ~~TV~~LK~~i~~~~gip~-~~q~L~~~~~~~~~~~~~L~~d~~~L 76 (97)
T 1wjn_A 32 SMTVQKVKGLLSRLLKVPV-SELLLSYESSKMPGREIELENDLQPL 76 (97)
T ss_dssp TSBHHHHHHHHHTTTTCCT-TTCEEEEECTTSCSCEEECCCSSSBS
T ss_pred CCCHHHHHHHHHHHHCCCh-hHeEEEEEcCCCCceeeccCCCcccH
Confidence 4788999999999999965 68889999864 44444 65554433
No 26
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=76.94 E-value=9.7 Score=31.29 Aligned_cols=77 Identities=19% Similarity=0.233 Sum_probs=51.7
Q ss_pred CCceeEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCc
Q 007185 1 MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLK 80 (614)
Q Consensus 1 m~~~lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~ 80 (614)
|...+.|+|+.-+- +.|.+.+.. +-+..+|+.+|++..++++ ....|.|. |- .|.|+.-|.++=.+...
T Consensus 1 m~~~m~I~Vk~~~g-~~~~~~v~~----~~TV~~LK~~I~~~~gip~-~~qrL~~~---Gk--~L~D~~tL~~~~I~~g~ 69 (88)
T 2hj8_A 1 MDEPLSILVRNNKG-RSSTYEVRL----TQTVAHLKQQVSGLEGVQD-DLFWLTFE---GK--PLEDQLPLGEYGLKPLS 69 (88)
T ss_dssp -CCEEEEEEEETTS-CEEEEEEES----SSBHHHHHHHHHHHTCSCT-TTEEEESS---SS--CCCTTSBHHHHHCSTTC
T ss_pred CCccEEEEEECCCC-CEEEEEECC----CCcHHHHHHHHHHHhCCCh-hHEEEEEC---CE--ECCCCCcHHHcCCCCCC
Confidence 76777888886322 555666653 3478899999999999864 57788885 43 35677778886445556
Q ss_pred eEEEEEEe
Q 007185 81 FLRIDVHL 88 (614)
Q Consensus 81 ~L~i~V~l 88 (614)
.|.+.+.+
T Consensus 70 ~i~l~~~~ 77 (88)
T 2hj8_A 70 TVFMNLRL 77 (88)
T ss_dssp EEEEEEC-
T ss_pred EEEEEEEc
Confidence 67666543
No 27
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=76.34 E-value=5.2 Score=38.59 Aligned_cols=71 Identities=7% Similarity=0.032 Sum_probs=48.2
Q ss_pred eeCCCCcEEEEEEEEeccCCCCCCCcEEEEecCCCCCCCCceeeeccCCCCCCCCEEEEEEEEecCCCCce----EEEEE
Q 007185 492 MMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGR----YISYW 567 (614)
Q Consensus 492 ~V~Pgt~FtKtWrLrN~Gt~~WP~G~~L~fvgGd~m~~~~sv~~~ipv~~v~PGeevdVSV~L~AP~~pG~----yiSyW 567 (614)
.+. |+.-+.+.+++|+|...| .+.-+... +. +.. ...+...++|||+..|.|.+.+-..+|. +...-
T Consensus 130 ~i~-g~~~~~~f~i~N~G~~pL----~I~~v~~s--cg-ct~-~~~~~~~i~PGe~~~i~v~~~~~~~~g~~~~~~~~~i 200 (220)
T 2qsv_A 130 QLD-GETTKAAIEIRNVGAGPL----RLHSVTTR--NP-ALT-AVPDRTEIKPGGSTLLRIAVDPQVMKAEGWQSIAADI 200 (220)
T ss_dssp ECT-TSCEEEEEEEEECSSSCE----EEEEEEEC--ST-TEE-EEESCSEECTTCEEEEEEEECHHHHHHTTCSEEEEEE
T ss_pred ccC-CCeEEEEEEEEECCCCCE----EEEEEEeC--CC-CEe-eecCCccCCCCCEEEEEEEEecCCCCCcccceeccEE
Confidence 567 899999999999999977 23233221 11 111 1233345899999999999985444487 77777
Q ss_pred EEEC
Q 007185 568 RMSS 571 (614)
Q Consensus 568 RL~t 571 (614)
.+.+
T Consensus 201 ~v~~ 204 (220)
T 2qsv_A 201 SIIC 204 (220)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7765
No 28
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.20 E-value=6.2 Score=34.31 Aligned_cols=59 Identities=19% Similarity=0.260 Sum_probs=42.6
Q ss_pred eEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHH
Q 007185 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVM 75 (614)
Q Consensus 5 lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~ 75 (614)
--+||+-.+--+|+-|-+. ++.+|+.|.+..|++. ..+ .-=+.+||| |++||+|....+
T Consensus 10 kpfkV~~~~Rs~k~GV~A~-------sL~EL~~K~~~~l~l~-~~~-~~lvLeeDG---T~VddEeyF~tL 68 (91)
T 2eel_A 10 RPFRVSNHDRSSRRGVMAS-------SLQELISKTLDALVIA-TGL-VTLVLEEDG---TVVDTEEFFQTL 68 (91)
T ss_dssp EEEEEECTTSCCCEEEEES-------SHHHHHHHHHHHTTCS-SSC-EEEEETTTC---CBCCCHHHHTTS
T ss_pred CCEEEecCCCCeEEeEEcC-------CHHHHHHHHHHHhcCC-CCC-cEEEEeeCC---cEEechhhhhhC
Confidence 3478886665566666643 6778999999999995 334 445789999 666788875444
No 29
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=73.39 E-value=3 Score=35.05 Aligned_cols=56 Identities=14% Similarity=0.278 Sum_probs=40.8
Q ss_pred cccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEE--ecCchhHHHHHHccCceEEEE
Q 007185 29 DLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVT--LVDDDDLCDVMRQRLKFLRID 85 (614)
Q Consensus 29 ~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VT--l~Dd~DL~~a~~q~l~~L~i~ 85 (614)
..+..+|+.||++.+++++ +...|-|.|.+|..+- +.|+.-|.+|=.+.-..|.|.
T Consensus 24 s~TI~~lK~ki~~~~Gip~-~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlv 81 (86)
T 4b6w_A 24 AQTIESIKENVFTHFATPP-EYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVV 81 (86)
T ss_dssp TSBHHHHHHHHHTTSCCCG-GGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEE
T ss_pred cCcHHHHHHHHHHHHCCCH-HHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEE
Confidence 3588899999999999965 5778999999998775 344444555534556666553
No 30
>1d4b_A CIDE B, human cell death-inducing effector B; alpha/beta roll, apoptosis; NMR {Homo sapiens} SCOP: d.15.2.1
Probab=70.56 E-value=6.6 Score=35.88 Aligned_cols=57 Identities=23% Similarity=0.239 Sum_probs=41.9
Q ss_pred EEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHH
Q 007185 6 VIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVM 75 (614)
Q Consensus 6 viKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~ 75 (614)
-+||+-.+.-+|+-|-.+ ++.+|+.|.+..|++ +.++ -=+.+||| |..||+|....+
T Consensus 37 PfKV~~~~Rs~k~GV~A~-------SL~EL~~K~~~~l~l--~~~~-~lvLeeDG---T~VddEeYF~tL 93 (122)
T 1d4b_A 37 PFRVCDHKRTIRKGLTAA-------TRQELLAKALETLLL--NGVL-TLVLEEDG---TAVDSEDFFQLL 93 (122)
T ss_dssp EEEEECSSSSCEEEEEEC-------CSSTHHHHHHHHHSC--CSSC-EEEETTTT---EEECSTHHHHHS
T ss_pred CEEEecCCCCeEEeEEcC-------CHHHHHHHHHHHhcc--CCCc-EEEEEeCC---cEEechhHhhcC
Confidence 467777776677776653 455699999999999 3333 34778999 677899987666
No 31
>2kut_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Geobacter metallireducens}
Probab=67.88 E-value=12 Score=33.92 Aligned_cols=66 Identities=18% Similarity=0.114 Sum_probs=43.2
Q ss_pred eCCCCcEEEEEEEEeccCCCCCCCcEEEEecCCCCCCCCceeeeccCCCCCCCCEEEEEEEEecCCCC
Q 007185 493 MAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELP 560 (614)
Q Consensus 493 V~Pgt~FtKtWrLrN~Gt~~WP~G~~L~fvgGd~m~~~~sv~~~ipv~~v~PGeevdVSV~L~AP~~p 560 (614)
..+|+.++-.=+|+|.|+..=+ ...+.|.-|+.-.....+ -...++.|++|++..++|.+..+..+
T Consensus 12 p~~g~~vTvsatVkN~Gt~~s~-a~~V~~yl~~p~~gg~~v-gt~tv~~LaaG~s~t~~v~~~~~~~~ 77 (122)
T 2kut_A 12 PFEGEEITVSARVTNRGAAEAH-NVPVAVYLGNPAQGGVEI-GRDTISRIPVGGTGLARVQWKATRKL 77 (122)
T ss_dssp CCTTCEEEEEEEEECCSSSCBC-CCCEEECSSCTTTCCCCC-BCCCCSCBCTTCEEECCEEEECCCCC
T ss_pred CCCCCeEEEEEEEEeCCCcccC-cEEEEEEeCCCccCCeEE-eeEEccccCCCCeEEEEEEEecCCcc
Confidence 4567777777789999999765 466666555421111111 12335689999999988887777554
No 32
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=66.27 E-value=33 Score=29.20 Aligned_cols=74 Identities=16% Similarity=0.200 Sum_probs=48.0
Q ss_pred eEEEEeeCCc-ceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEE-Ee-cCchhHHHHHHccCce
Q 007185 5 MVIKVKYGDT-LRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIV-TL-VDDDDLCDVMRQRLKF 81 (614)
Q Consensus 5 lviKvk~gdd-lRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~V-Tl-~Dd~DL~~a~~q~l~~ 81 (614)
+.|+|+.... -+.+.+.+. .+.+..+|+.||++.+++++ +...|-|.| +|-.+ .| .|+.-|.++=.+.-.+
T Consensus 16 v~l~It~s~~~~~~~~~~v~----~~~TV~~LK~kI~~~~GiP~-~~QrL~~~~-~g~~~~~L~~D~~tL~~Y~i~~gst 89 (95)
T 2kjr_A 16 IKVNVSNSHNDAVAFEVKLA----KDLTVAQLKTKLEILTGGCA-GTMKVQVFK-GDTCVSTMDNNDAQLGYYANSDGLR 89 (95)
T ss_dssp EEEEEEESSCSCEEEEEEEE----TTCBHHHHHHHHHHHHCSCT-TTEEEEEEE-TTEEEEECCCTTSBHHHHCCSSSCE
T ss_pred EEEEEEECCCCceEEEEEeC----ccCHHHHHHHHHHHHHCcCH-HHeEEEEec-CCcccceeCCCCCCHhHCCcCCCCE
Confidence 5566665432 356777765 34688899999999999964 577888887 46554 45 4444566653444444
Q ss_pred EEE
Q 007185 82 LRI 84 (614)
Q Consensus 82 L~i 84 (614)
|.|
T Consensus 90 ihl 92 (95)
T 2kjr_A 90 LHV 92 (95)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 33
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=65.80 E-value=36 Score=30.01 Aligned_cols=74 Identities=22% Similarity=0.333 Sum_probs=56.6
Q ss_pred eeEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHH-----Hcc
Q 007185 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVM-----RQR 78 (614)
Q Consensus 4 ~lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~-----~q~ 78 (614)
++-||.-|.+.=|=|.++ --+.|.+|+.|+..+|+. .+.|-|+ ..-=+|-|..-+||-.|+ ..-
T Consensus 20 dvRIKfE~~gEkRIi~f~------RPv~f~el~~kv~~afGq----~ldl~y~-nnEL~iPL~~Q~DLDkAvelLDrs~~ 88 (100)
T 2npt_B 20 DVRVKFEHRGEKRILQFP------RPVKLEDLRSKAKIAFGQ----SMDLHYT-NNELVIPLTTQDDLDKAVELLDRSIH 88 (100)
T ss_dssp CEEEEEEETTEEEEEEEC------SSCCHHHHHHHHHHHHTS----CEEEEEE-ETTEEEECCCHHHHHHHHHHHHHCSS
T ss_pred ceEEEEEecCceEEEecC------CCccHHHHHHHHHHHhCC----eeeeEEe-cceeEEecccHHHHHHHHHHhccCcc
Confidence 477999999977767766 236788899999999986 4778999 445678888889988776 225
Q ss_pred CceEEEEEEe
Q 007185 79 LKFLRIDVHL 88 (614)
Q Consensus 79 l~~L~i~V~l 88 (614)
++-|||.+..
T Consensus 89 ~kSLrIlL~~ 98 (100)
T 2npt_B 89 MKSLKILLVI 98 (100)
T ss_dssp CCSEEEEEEE
T ss_pred ccceEEEEec
Confidence 6778888754
No 34
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=65.05 E-value=40 Score=26.98 Aligned_cols=74 Identities=19% Similarity=0.132 Sum_probs=49.2
Q ss_pred eeEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceEE
Q 007185 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLR 83 (614)
Q Consensus 4 ~lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L~ 83 (614)
.+.|+|+.-+ =+.|.+.+.. +-+..+|+.+|++...++ -....|.|.. - .|.|+.-|.++=.+.-..|.
T Consensus 7 ~m~i~Vk~~~-g~~~~~~v~~----~~tV~~lK~~i~~~~gi~-~~~qrL~~~G---k--~L~d~~tL~~~~i~~g~~i~ 75 (87)
T 1wh3_A 7 GIQVFVKNPD-GGSYAYAINP----NSFILGLKQQIEDQQGLP-KKQQQLEFQG---Q--VLQDWLGLGIYGIQDSDTLI 75 (87)
T ss_dssp SEEEEEEETT-TEEEEEEECS----SSBHHHHHHHHHHHTCCC-TTTEEEEETT---E--ECCSSSBHHHHTCCTTEEEE
T ss_pred CEEEEEEcCC-CCEEEEEeCC----CChHHHHHHHHHHHhCCC-hHHEEEEECC---E--EccCCCCHHHCCCCCCCEEE
Confidence 3566776532 1455666653 357889999999999986 4577888853 2 46777778886444456666
Q ss_pred EEEEe
Q 007185 84 IDVHL 88 (614)
Q Consensus 84 i~V~l 88 (614)
+.+.+
T Consensus 76 l~~~~ 80 (87)
T 1wh3_A 76 LSKKK 80 (87)
T ss_dssp EEECS
T ss_pred EEEec
Confidence 65543
No 35
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=65.04 E-value=11 Score=30.03 Aligned_cols=77 Identities=25% Similarity=0.262 Sum_probs=50.1
Q ss_pred ceeEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceE
Q 007185 3 STMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFL 82 (614)
Q Consensus 3 ~~lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L 82 (614)
+.+.|+|+.-+ =+.|.+.++. +-+..+|+.+|++.+++++ ....|.|... .|.|+.-|.++=.+.-..|
T Consensus 2 s~m~i~vk~~~-g~~~~~~v~~----~~tV~~lK~~i~~~~~i~~-~~qrL~~~g~-----~L~d~~tL~~~~i~~~~~l 70 (85)
T 3mtn_B 2 SHMQIFVKTLT-GKTITLEVEP----SDTIENVKAKIQDKEGIPP-DQQRLIFAGK-----QLEDGRTLSDYNIQKWSTL 70 (85)
T ss_dssp -CEEEEEECTT-SCEEEEEECT----TCBHHHHHHHHHHHHCCCG-GGCEEEETTE-----ECCTTSBTGGGTCCTTCEE
T ss_pred CeEEEEEEcCC-CCEEEEEECC----CCCHHHHHHHHHHHHCcCh-HHEEEEECCE-----ECCCCCCHHHcCCCCCCEE
Confidence 34667777643 2456666653 3588899999999999864 4778889542 4667766766433445666
Q ss_pred EEEEEecC
Q 007185 83 RIDVHLNN 90 (614)
Q Consensus 83 ~i~V~l~~ 90 (614)
.+.+.+..
T Consensus 71 ~l~~r~~G 78 (85)
T 3mtn_B 71 FLLLRLRG 78 (85)
T ss_dssp EEECCCCC
T ss_pred EEEEECcC
Confidence 66665443
No 36
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=64.67 E-value=47 Score=29.67 Aligned_cols=73 Identities=22% Similarity=0.307 Sum_probs=55.6
Q ss_pred eeEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHH-----Hcc
Q 007185 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVM-----RQR 78 (614)
Q Consensus 4 ~lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~-----~q~ 78 (614)
++-||.-|.+.=|=|.+. --+.|.+|+.|++.+|+- .+.|-|+ +.-=+|-|..-+||-.|+ ..-
T Consensus 31 dvRIKfE~~gEKRIiqf~------RPvkf~dl~qkv~~afGq----~ldl~y~-nnEL~IPL~~Q~DLDkAvelLDrs~~ 99 (111)
T 2c60_A 31 DVRIKFEHNGERRIIAFS------RPVKYEDVEHKVTTVFGQ----PLDLHYM-NNELSILLKNQDDLDKAIDILDRSSS 99 (111)
T ss_dssp CEEEEEEETTEEEEEEEC------SSCCHHHHHHHHHHHHSS----CCEEEEE-CSSCEEECCSHHHHHHHHHHHHHCSS
T ss_pred ceEEEEEecCceEEEecC------CCccHHHHHHHHHHHhCC----eeeeEEe-cceEEEecccHHHHHHHHHHhccCcc
Confidence 467888888866666665 236788899999999975 4678898 556788888999998776 225
Q ss_pred CceEEEEEE
Q 007185 79 LKFLRIDVH 87 (614)
Q Consensus 79 l~~L~i~V~ 87 (614)
++-|||.+.
T Consensus 100 mkSLRIlL~ 108 (111)
T 2c60_A 100 MKSLRILLL 108 (111)
T ss_dssp CCSEEEEEE
T ss_pred ccceEEEEe
Confidence 677888775
No 37
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=64.55 E-value=16 Score=28.91 Aligned_cols=76 Identities=20% Similarity=0.213 Sum_probs=50.3
Q ss_pred CCceeEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCc
Q 007185 1 MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLK 80 (614)
Q Consensus 1 m~~~lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~ 80 (614)
|...+.|+||.-+ =+.|.+.+.. +-+..+|+.+|++.++++++ ...|.|. | -.|.|+.-|.++=.+.-.
T Consensus 1 ~~~~m~i~Vk~~~-g~~~~~~v~~----~~tV~~lK~~i~~~~gip~~-~qrL~~~---G--~~L~d~~tL~~~~i~~~~ 69 (79)
T 3phx_B 1 MDEPLSILVRNNK-GRSSTYEVRL----TQTVAHLKQQVSGLEGVQDD-LFWLTFE---G--KPLEDQLPLGEYGLKPLS 69 (79)
T ss_dssp --CCEEEEEECTT-SCEEEEEECT----TSBHHHHHHHHHHHHTCCGG-GEEEEET---T--EECCTTSBGGGGTCCTTC
T ss_pred CCCCEEEEEEeCC-CCEEEEEECC----cChHHHHHHHHHhhcCCCHH-HEEEEEC---C--EECCCCCcHHHCCCCCCC
Confidence 6777888888633 1455666653 34888999999999999654 6788884 3 245677677775434456
Q ss_pred eEEEEEE
Q 007185 81 FLRIDVH 87 (614)
Q Consensus 81 ~L~i~V~ 87 (614)
.|.+.+.
T Consensus 70 ~l~l~~r 76 (79)
T 3phx_B 70 TVFMNLR 76 (79)
T ss_dssp EEEEEEC
T ss_pred EEEEEEe
Confidence 6666554
No 38
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=64.41 E-value=13 Score=33.65 Aligned_cols=79 Identities=13% Similarity=0.194 Sum_probs=57.7
Q ss_pred eeecCCCceeCCCCcEEEEEEEEeccCCCCCCCcEEEE-ecCCCCCCCCceeeeccCCCCCCCCEEEEEEEEecCCCCce
Q 007185 484 DVNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVW-IGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGR 562 (614)
Q Consensus 484 DVTipDGT~V~Pgt~FtKtWrLrN~Gt~~WP~G~~L~f-vgGd~m~~~~sv~~~ipv~~v~PGeevdVSV~L~AP~~pG~ 562 (614)
+++.|+ .+.+|+..+=.=+|+|.|...= .++.+.+ ++|.... . ..+ .|++|++..|++.+. |..+|.
T Consensus 22 ~is~P~--~v~~G~~~ti~vtV~N~G~~~a-~~~~V~lyvng~~v~---t----~~v-~La~G~s~tv~f~~~-~~~~G~ 89 (127)
T 3idu_A 22 EIKGPD--VVGVNKLAEYEVHVKNLGGIGV-PSTKVRVYINGTLYK---N----WTV-SLGPKEEKVLTFNWT-PTQEGM 89 (127)
T ss_dssp EEESCS--EECTTCCEEEEEEEEECSSSCE-EEEEEEEEETTEEEE---E----EEE-EECTTCEEEEEEEEC-CSSCEE
T ss_pred EecCCC--cccCCCEEEEEEEEEECCCCcc-CCcEEEEEECCEEEe---e----EEe-ccCCCCeEEEEEEEE-cCCCcE
Confidence 667777 8899999999999999999875 4677754 4443222 1 122 489999999999986 788998
Q ss_pred EEEEEEEECCCCC
Q 007185 563 YISYWRMSSPSGV 575 (614)
Q Consensus 563 yiSyWRL~tpdG~ 575 (614)
| ...-..++++.
T Consensus 90 ~-~v~AvVD~~n~ 101 (127)
T 3idu_A 90 Y-RINATVDEENT 101 (127)
T ss_dssp E-EEEEEESTTCC
T ss_pred E-EEEEEEcCCCc
Confidence 8 44455666663
No 39
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=64.35 E-value=23 Score=30.77 Aligned_cols=71 Identities=10% Similarity=0.122 Sum_probs=51.1
Q ss_pred eecCCCceeCCCCcEEEEEEEEeccCCCCCCCcEEEEecCCCCCCCCceeeeccCCCCCCCCEEEEEEEEecCCCCceEE
Q 007185 485 VNVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYI 564 (614)
Q Consensus 485 VTipDGT~V~Pgt~FtKtWrLrN~Gt~~WP~G~~L~fvgGd~m~~~~sv~~~ipv~~v~PGeevdVSV~L~AP~~pG~yi 564 (614)
+.+++-. .-|+.+.-.-.++|.=.++- .+|.|..-|.. +.. +..+.+..++||+++.+.+.|+ |.++|.-+
T Consensus 10 I~v~g~~--~v~~~l~v~vsf~NPL~~~L-~~c~~~vEG~G-L~~----~~~~~~~~v~pg~~~~~~~~~~-P~~~G~~~ 80 (102)
T 2xzz_A 10 LTLLGAA--VVGQECEVQIVFKNPLPVTL-TNVVFRLEGSG-LQR----PKILNVGDIGGNETVTLRQSFV-PVRPGPRQ 80 (102)
T ss_dssp EEESSCC--CSSSCEEEEEEEECCSSSCB-CSEEEEEEETT-TEE----EEEEEECCBCTTCEEEEEEEEC-CCSCSSCC
T ss_pred EEECCCc--ccCCeEEEEEEEECCCCCcc-cCEEEEEECCC-CCc----ceEEEcCcCCCCCEEEEEEEEe-cCcccceE
Confidence 3455433 33899999999999877776 79998655533 221 1344456799999999999995 99999643
No 40
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=64.14 E-value=26 Score=30.07 Aligned_cols=76 Identities=16% Similarity=0.162 Sum_probs=49.7
Q ss_pred eeEEEEeeCCc-ceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEE-Ee-cCchhHHHHHHccCc
Q 007185 4 TMVIKVKYGDT-LRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIV-TL-VDDDDLCDVMRQRLK 80 (614)
Q Consensus 4 ~lviKvk~gdd-lRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~V-Tl-~Dd~DL~~a~~q~l~ 80 (614)
.+.|.|+.... -+.+.+.+. .+.+..+|+.||++.++++ -+...|-|.+.+|-.| .| .|+.-|.+|=.+.-.
T Consensus 14 ~v~l~It~s~~~~~~~e~~v~----~~~TV~~LK~kIe~~~Gip-~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~ 88 (97)
T 2kj6_A 14 SVHLHITHANLKSFSADARFS----PQMSVEAVKEKLWKKCGTS-VNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGF 88 (97)
T ss_dssp CEEEEEEETTSSCCCEEEEEC----TTCCHHHHHHHHHHHHCCC-TTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCC
T ss_pred eEEEEEEECCCCceEEEEEeC----CCChHHHHHHHHHHHHCcC-HHHeEEEEecCCCcccceecCCcCCHHHCCCCCCC
Confidence 34555555332 245666664 3468899999999999996 5588999999887764 34 444446665445555
Q ss_pred eEEE
Q 007185 81 FLRI 84 (614)
Q Consensus 81 ~L~i 84 (614)
+|.|
T Consensus 89 ~Ihl 92 (97)
T 2kj6_A 89 RLHI 92 (97)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5543
No 41
>1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A*
Probab=63.72 E-value=24 Score=38.01 Aligned_cols=82 Identities=18% Similarity=0.228 Sum_probs=55.8
Q ss_pred ecCCCceeCCCCcEEEEEEEEeccCCCCCCCcEEEEecCCCCCCCCceeeeccCCCCCCCCEEEEEEEEecC--CCCceE
Q 007185 486 NVLDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAP--ELPGRY 563 (614)
Q Consensus 486 TipDGT~V~Pgt~FtKtWrLrN~Gt~~WP~G~~L~fvgGd~m~~~~sv~~~ipv~~v~PGeevdVSV~L~AP--~~pG~y 563 (614)
++|+ ..++||..++-+|+|.|.+..+=. |-.+...-. -+ .....++..++||+...+.|+++.| ..+|.|
T Consensus 363 ~~~~-~~~~~g~~~~~~~~vtn~~~~~~~-~~~~~~~~~--~~----~~~~~~~~~~~~g~~~t~~~~vt~~~~~~~g~y 434 (601)
T 1w8o_A 363 TIPD-VALEPGQQVTVPVAVTNQSGIAVP-KPSLQLDAS--PD----WQVQGSVEPLMPGRQAKGQVTITVPAGTTPGRY 434 (601)
T ss_dssp ECCC-EEECTTCEEEEEEEEECCSSSCBS-SCEEEEECC--TT----SEEEEEECCBCTTCEEEEEEEEECCTTCCCEEE
T ss_pred cCcc-ceecCCceeEEEEEEECCCceecc-CceEEEecC--CC----cEEeccccccCCCCceEEEEEEecCCCCCCCcE
Confidence 4444 568899999999999998876553 444442111 11 1111134568999999998888888 457899
Q ss_pred EEEEEEECCCCC
Q 007185 564 ISYWRMSSPSGV 575 (614)
Q Consensus 564 iSyWRL~tpdG~ 575 (614)
.--.++...+|.
T Consensus 435 ~l~~~~~~~~~~ 446 (601)
T 1w8o_A 435 RVGATLRTSAGN 446 (601)
T ss_dssp EEEEEEEETTEE
T ss_pred EeeEEEEecCce
Confidence 888888776663
No 42
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=63.40 E-value=13 Score=32.83 Aligned_cols=61 Identities=21% Similarity=0.292 Sum_probs=41.4
Q ss_pred eEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHH
Q 007185 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVM 75 (614)
Q Consensus 5 lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~ 75 (614)
--+||+--.+=+|+-|-.+ ++.+|+.|.+..|++..+....-=|.+||| |++||+|....+
T Consensus 19 kPfkV~~~~~r~k~GV~A~-------SL~EL~~K~~~~l~l~~~~~~~~lvLeeDG---T~VddEeYF~tL 79 (100)
T 1f2r_I 19 KPCLLRRNHSRDQHGVAAS-------SLEELRSKACELLAIDKSLTPITLVLAEDG---TIVDDDDYFLCL 79 (100)
T ss_dssp EEEEEEETTEEEEEEEEES-------SHHHHHHHHHHHHCCCGGGCSCEEEESSSC---CBCCSSSSSSSS
T ss_pred CCEEEeeCCCccEEeEEcC-------CHHHHHHHHHHHhccCCCCCceEEEEeeCC---cEEechhHhhcC
Confidence 4578884444446666543 778899999999999754333444778999 566788874333
No 43
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=63.20 E-value=33 Score=29.11 Aligned_cols=74 Identities=19% Similarity=0.249 Sum_probs=49.6
Q ss_pred ceeEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceE
Q 007185 3 STMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFL 82 (614)
Q Consensus 3 ~~lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L 82 (614)
..+.|+|+..+. +|.+.+.. +-+..+|+.+|++.++++ -....|.|. |- .|.|+.-|.++=.+....|
T Consensus 21 ~~m~I~Vk~~~g--~~~l~v~~----~~TV~~LK~~I~~~~gip-~~~QrLi~~---Gk--~L~D~~tL~~ygI~~gstI 88 (100)
T 1yqb_A 21 HLIKVTVKTPKD--KEDFSVTD----TCTIQQLKEEISQRFKAH-PDQLVLIFA---GK--ILKDPDSLAQCGVRDGLTV 88 (100)
T ss_dssp TEEEEEEECSSC--EEEEEEET----TCBHHHHHHHHHHHHTCC-GGGEEEEET---TE--ECCTTSBHHHHTCCTTCEE
T ss_pred CeEEEEEEcCCC--cEEEEECC----CCcHHHHHHHHHHHHCcC-hhhEEEEEC---CE--ECCCcCcHHHCCCCCCCEE
Confidence 346677776553 36677653 357889999999999986 457888885 42 4567777777644445566
Q ss_pred EEEEEe
Q 007185 83 RIDVHL 88 (614)
Q Consensus 83 ~i~V~l 88 (614)
.+.+.+
T Consensus 89 ~l~~r~ 94 (100)
T 1yqb_A 89 HLVIKR 94 (100)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 665543
No 44
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=62.22 E-value=15 Score=30.57 Aligned_cols=70 Identities=19% Similarity=0.212 Sum_probs=47.1
Q ss_pred eeEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceEE
Q 007185 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLR 83 (614)
Q Consensus 4 ~lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L~ 83 (614)
.+.|+||.| +.+.+.++. +-+..+|+.+|++..+++ -....|.|. |- .|.|+.-|.++=.+.-..|.
T Consensus 19 ~m~I~Vk~g---~~~~l~v~~----~~TV~~LK~~I~~~~gip-~~~qrLi~~---Gk--~L~D~~tL~~y~I~~gstI~ 85 (93)
T 2l7r_A 19 SMQLFVRAQ---ELHTFEVTG----QETVAQIKAHVASLEGIA-PEDQVVLLA---GA--PLEDEATLGQCGVEALTTLE 85 (93)
T ss_dssp -CEEEEESS---SEEEEECCS----SCBHHHHHHHHHHHHTCC-GGGCEEEET---TE--ECCTTSBHHHHTCCSSCEEE
T ss_pred cEEEEEECC---CEEEEEeCC----CCcHHHHHHHHHHHhCcC-hhHEEEEEC---CE--ECCCCCcHHHCCCCCCCEEE
Confidence 356777775 455666653 357889999999999986 457888886 32 46677777776444455565
Q ss_pred EEE
Q 007185 84 IDV 86 (614)
Q Consensus 84 i~V 86 (614)
+.+
T Consensus 86 lv~ 88 (93)
T 2l7r_A 86 VAG 88 (93)
T ss_dssp EEC
T ss_pred EEE
Confidence 544
No 45
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=61.13 E-value=32 Score=32.58 Aligned_cols=40 Identities=13% Similarity=0.228 Sum_probs=32.9
Q ss_pred ceeEEEEeeCC----cceeeeeecCCCCCccccHHHHHHHHHHhcCCCCC
Q 007185 3 STMVIKVKYGD----TLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHD 48 (614)
Q Consensus 3 ~~lviKvk~gd----dlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~ 48 (614)
+.+.|||.+-+ .-|||.|+- +++|.+|-..||.+|....+
T Consensus 7 ~iy~lrV~L~~~~p~iWRri~Vp~------~~TL~~LH~vIq~afgw~~~ 50 (188)
T 2i1s_A 7 KVYHLKLSIKGITPQIWRRIQVPE------NYTFLDLHKAIQAVMDWEDY 50 (188)
T ss_dssp EEEEEEEEETTCSSCEEEEEEEET------TCBHHHHHHHHHHHTTCCCC
T ss_pred cEEEEEEEECCCCCCeEEEEEECC------CCCHHHHHHHHHHHhCCCCC
Confidence 35889999985 679999993 46888999999999988644
No 46
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=60.42 E-value=53 Score=27.72 Aligned_cols=72 Identities=21% Similarity=0.292 Sum_probs=46.8
Q ss_pred eEEEEee--CC-cceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCch-hHHHHHHccCc
Q 007185 5 MVIKVKY--GD-TLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDD-DLCDVMRQRLK 80 (614)
Q Consensus 5 lviKvk~--gd-dlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~-DL~~a~~q~l~ 80 (614)
+.|.|+. |+ .=++|.+.+.. +.+..+|+.+|++.+++++ +...|.|.. -.|.||+ -|.++=.+...
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~----~~TV~~LK~~I~~~~gip~-~~qrL~~~g-----k~L~D~~~tL~~ygI~~g~ 77 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNP----DFELSNFRVLCELESGVPA-EEAQIVYME-----QLLTDDHCSLGSYGLKDGD 77 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECT----TCBHHHHHHHHHHHTCCCG-GGBCEEETT-----EEECCSSSBHHHHTCCTTE
T ss_pred EEEEEEECCCCcCceEEEEEcCC----CCCHHHHHHHHHHHHCcCh-HHeEEEECC-----EECCCCcccHHHCCCCCCC
Confidence 4555555 54 22677787753 3578899999999999964 577888864 2466664 47776334444
Q ss_pred eEEEEE
Q 007185 81 FLRIDV 86 (614)
Q Consensus 81 ~L~i~V 86 (614)
.|.|.+
T Consensus 78 ~l~l~~ 83 (102)
T 1v5o_A 78 MVVLLQ 83 (102)
T ss_dssp EEEECB
T ss_pred EEEEEE
Confidence 554433
No 47
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=60.00 E-value=49 Score=27.06 Aligned_cols=75 Identities=15% Similarity=0.210 Sum_probs=48.3
Q ss_pred CceeEEEEeeCCcceeeeeecCCC-CCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCch-hHHHHHHccC
Q 007185 2 ESTMVIKVKYGDTLRRFNARVDEN-EKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDD-DLCDVMRQRL 79 (614)
Q Consensus 2 ~~~lviKvk~gddlRRf~~~~~~n-~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~-DL~~a~~q~l 79 (614)
+..+.|+|++++ +++.+.+..+ ++.+.+..+|+.+|++..+++ -+...|.|. |- .|.||+ -|.++-.+.-
T Consensus 5 ~~~~~v~Vk~~~--~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip-~~~qrL~~~---Gk--~L~D~~~~L~~~~i~~g 76 (92)
T 1wxv_A 5 SSGLTVTVTHSN--EKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVP-QSFQKLIFK---GK--SLKEMETPLSALGIQDG 76 (92)
T ss_dssp CSSEEEEEECSS--SEEEEEECCCSSSSSCBHHHHHHHHHHHTCCC-TTTCEEEET---TE--EECCSSSBHHHHTCCSS
T ss_pred CCeEEEEEEECC--EEEEEEECCCcCcccCcHHHHHHHHHHHHCcC-HHHEEEEEC---Ce--ecCCCcccHHHCCCCCC
Confidence 445778888865 4566666532 122467889999999999986 457788886 32 355634 5777643334
Q ss_pred ceEEE
Q 007185 80 KFLRI 84 (614)
Q Consensus 80 ~~L~i 84 (614)
..|.+
T Consensus 77 ~~i~l 81 (92)
T 1wxv_A 77 CRVML 81 (92)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 44433
No 48
>1ibx_B Chimera of IGG binding protein G and DNA fragmentation factor 45; DFF40, DFF45, protein-protein complex, CIDE, CIDE domain complex; HET: DNA; NMR {Streptococcus SP} SCOP: d.15.2.1
Probab=59.45 E-value=7.9 Score=36.31 Aligned_cols=42 Identities=29% Similarity=0.414 Sum_probs=32.6
Q ss_pred cHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHH
Q 007185 31 DIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVM 75 (614)
Q Consensus 31 ~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~ 75 (614)
++.+|+.|.+..|++.......-=+.+||| |++||+|....|
T Consensus 83 SL~EL~~K~~~kL~l~~~~~~~~LvLeeDG---TeVddEeYF~tL 124 (145)
T 1ibx_B 83 CLEDLRSKACDILAIDKSLTPVTLVLAEDG---TIVDDDDYFLCL 124 (145)
T ss_dssp SHHHHHHHHHHHHTCSCTTSCCEEEETTTC---CBCSSHHHHHHS
T ss_pred CHHHHHHHHHHHhcCCCCccccEEEEeeCC---cEEechhHhhcC
Confidence 778899999999999654234444788999 667899987666
No 49
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=57.88 E-value=40 Score=27.83 Aligned_cols=69 Identities=19% Similarity=0.231 Sum_probs=45.7
Q ss_pred eeEEEEeeCCcceeeee-ecCCCCCccccHHHHHHHHHHhcCCCCCCcceEE---EecCCCCEEEecCchhHHHHHHccC
Q 007185 4 TMVIKVKYGDTLRRFNA-RVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLT---YVDEDGDIVTLVDDDDLCDVMRQRL 79 (614)
Q Consensus 4 ~lviKvk~gddlRRf~~-~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lk---Y~DeDGD~VTl~Dd~DL~~a~~q~l 79 (614)
.+.|+||+++ +.|.+ .+.. +-+..+|+.+|++..+++++ ...|. |. | -.|.|+..|.++=.+.-
T Consensus 7 ~m~i~Vk~~g--~~~~i~~v~~----~~TV~~lK~~I~~~~gip~~-~QkLi~~k~~---G--k~L~D~~~L~~~~i~~g 74 (90)
T 1v5t_A 7 GLPIIVKWGG--QEYSVTTLSE----DDTVLDLKQFLKTLTGVLPE-RQKLLGLKVK---G--KPAENDVKLGALKLKPN 74 (90)
T ss_dssp SCCEEEEETT--EEEEECSCCS----SSBHHHHHHHHHHHTCCCTT-TCEEESCEET---T--EECCTTSBHHHHTCCTT
T ss_pred eEEEEEEECC--EEEEEEEeCC----CCCHHHHHHHHHHHHCcCHH-HeEEEeeccC---C--cCcCCCCCHHHcCCCCC
Confidence 3567788876 56777 6653 24778999999999999765 55555 63 4 24677778887533333
Q ss_pred ceEEE
Q 007185 80 KFLRI 84 (614)
Q Consensus 80 ~~L~i 84 (614)
..|.+
T Consensus 75 ~~l~l 79 (90)
T 1v5t_A 75 TKIMM 79 (90)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 44444
No 50
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=56.94 E-value=13 Score=29.48 Aligned_cols=76 Identities=24% Similarity=0.225 Sum_probs=48.8
Q ss_pred eeEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceEE
Q 007185 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLR 83 (614)
Q Consensus 4 ~lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L~ 83 (614)
.+.|+|+.-+ =+.|.+.+.. +-+..+|+.+|++.+++++ +.+.|.|... .|.|+.-|.++=.+.-..|.
T Consensus 3 ~m~i~vk~~~-g~~~~~~v~~----~~tV~~lK~~i~~~~~ip~-~~qrL~~~g~-----~L~d~~tL~~~~i~~~~~i~ 71 (85)
T 3n3k_B 3 HMRIVVKTLM-GRTIILEVEP----SDTIENVKAKIQDKEGIPP-DQQRLIFAGK-----QLEDGRTLSDYNIHNHSALY 71 (85)
T ss_dssp -CEEEEECGG-GCEEEEECCT----TCBHHHHHHHHHHHHCCCG-GGEEEEETBE-----ECCTTCBTTTTTCCTTCEEE
T ss_pred eEEEEEEeCC-CCEEEEEECC----CCcHHHHHHHHHHHHCCCH-HHEEEEECCe-----ECCCCCCHHHCCCCCCCEEE
Confidence 3556666432 2345666653 3588899999999999864 5788999542 36676667775334456677
Q ss_pred EEEEecC
Q 007185 84 IDVHLNN 90 (614)
Q Consensus 84 i~V~l~~ 90 (614)
+.+.+..
T Consensus 72 l~~rl~G 78 (85)
T 3n3k_B 72 LLLKLRG 78 (85)
T ss_dssp EEECCC-
T ss_pred EEEeccC
Confidence 7665443
No 51
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Probab=55.89 E-value=94 Score=28.36 Aligned_cols=87 Identities=11% Similarity=-0.005 Sum_probs=45.6
Q ss_pred ceeCCCCcEEEEEEEEeccCCCCCCCcEEEEecCCCCCCC-Cceeee--c-cCCCCCCCCEEEEEEEEecCCCCceEEEE
Q 007185 491 TMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDG-VSVEIE--V-PADGVPVEGEIDIAVDFTAPELPGRYISY 566 (614)
Q Consensus 491 T~V~Pgt~FtKtWrLrN~Gt~~WP~G~~L~fvgGd~m~~~-~sv~~~--i-pv~~v~PGeevdVSV~L~AP~~pG~yiSy 566 (614)
-.|++|.++ ++++.|.|...| .+-.+.-. |..+... ....+. . -...+.||+....++.|++ ++|. |
T Consensus 63 i~V~~GD~V--~~~~tN~~~~~~-H~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~i~PG~sgt~t~tft~--~pGt---Y 133 (154)
T 2cal_A 63 LEIPAGATV--DVTFINTNKGFG-HSFDITKK-GPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTDFTWHP--TAGT---Y 133 (154)
T ss_dssp EEECTTCEE--EEEEEECCTTCC-CCCEEESC-CSCCCSSCCCCSEEEEBCCCCCCBTTBEEEEEEEECC--CSEE---E
T ss_pred EEEeCCCEE--EEEEEcCCCCee-eEEEEeec-CcchhccccccccccccccccccCCCCceEEEEEEEE--CCce---E
Confidence 366777755 477889764443 66655432 2222110 000000 0 0125789997778888874 9995 5
Q ss_pred EEEECCCCCccCCeEEEEEEE
Q 007185 567 WRMSSPSGVKFGQRVWVLIQV 587 (614)
Q Consensus 567 WRL~tpdG~~FG~~LWv~I~V 587 (614)
|=.|+--|.. ..-.+-.|.|
T Consensus 134 ~y~C~~~gH~-~~GM~G~IiV 153 (154)
T 2cal_A 134 YYVCQIPGMA-ATGMFGKIVV 153 (154)
T ss_dssp EEECCSTTTG-GGTCEEEEEE
T ss_pred EEECCCCCHH-HCCCEEEEEE
Confidence 6666533332 1124555554
No 52
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=55.67 E-value=24 Score=29.13 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=46.4
Q ss_pred eeEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceEE
Q 007185 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLR 83 (614)
Q Consensus 4 ~lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L~ 83 (614)
.+.|+|+..+ +.|.+.+.. +-+..+|+.+|++.+++++ ....|.|. |- .|.|+.-|.++=.+.-..|.
T Consensus 17 ~m~i~Vk~~g--~~~~~~v~~----~~TV~~LK~~I~~~~gip~-~~qrL~~~---Gk--~L~D~~tL~~~gi~~g~~i~ 84 (96)
T 1wx8_A 17 IIRVSVKTPQ--DCHEFFLAE----NSNVRRFKKQISKYLHCNA-DRLVLIFT---GK--ILRDQDILSQRGILDGSTVH 84 (96)
T ss_dssp EEEEEEECSS--SEEEEEEET----TCCHHHHHHHHHHHTCSCT-TTBCCEET---TE--ECCTTSCHHHHTCCTTEEEE
T ss_pred cEEEEEEECC--eEEEEEECC----CCCHHHHHHHHHHHhCCCH-HHEEEEEC---CE--ECCCcCCHHHCCCCCCCEEE
Confidence 4567777642 455666642 3578899999999999865 46777885 32 45677777776434444554
Q ss_pred EEE
Q 007185 84 IDV 86 (614)
Q Consensus 84 i~V 86 (614)
+.+
T Consensus 85 l~~ 87 (96)
T 1wx8_A 85 VVV 87 (96)
T ss_dssp CCB
T ss_pred EEE
Confidence 443
No 53
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=54.88 E-value=26 Score=38.97 Aligned_cols=67 Identities=16% Similarity=0.161 Sum_probs=51.3
Q ss_pred CCceeEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHH
Q 007185 1 MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCD 73 (614)
Q Consensus 1 m~~~lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~ 73 (614)
|.+.+.+||.+-|.--.|.+..+ -+-.+|..+|++-++|....-|.|.|.|.+|...-|.-+.-+.+
T Consensus 1 ~~k~i~v~V~llDgt~e~~vd~~------tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~ 67 (575)
T 2i1j_A 1 MPKSMNVRVTTMDAELEFAIQQT------TTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQ 67 (575)
T ss_dssp --CEEEEEEECSSCEEEEEEETT------CBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGG
T ss_pred CCceEEEEEEeCCCeEEEEECCC------CCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHH
Confidence 77889999999887444555432 35678999999999999888999999999998877766555544
No 54
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.17 E-value=25 Score=27.56 Aligned_cols=69 Identities=25% Similarity=0.289 Sum_probs=43.0
Q ss_pred eEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceEEE
Q 007185 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRI 84 (614)
Q Consensus 5 lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L~i 84 (614)
+.|+|+.-+. +.|.+.+.. +-+..+|+.+|++.+++++ ....|.|. |- .|.|+.-|.++=.+.-..|.+
T Consensus 8 m~i~vk~~~g-~~~~~~v~~----~~tV~~LK~~i~~~~~i~~-~~qrL~~~---gk--~L~d~~tL~~~~i~~g~~i~l 76 (81)
T 2dzi_A 8 MQLTVKALQG-RECSLQVPE----DELVSTLKQLVSEKLNVPV-RQQRLLFK---GK--ALADGKRLSDYSIGPNSKLNL 76 (81)
T ss_dssp EEEEEEETTS-CEEEEEECS----SCBHHHHHHHHHHHTCCCT-TTCEEEET---TE--ECCTTSBGGGGTCCSSBCCEE
T ss_pred EEEEEEeCCC-CEEEEEECC----CCcHHHHHHHHHHHHCcCH-HHEEEEEC---Ce--ECCCCCcHHHcCCCCCCEEEE
Confidence 5566664221 456666653 3578899999999999864 57888885 43 356666666642233344444
No 55
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=53.14 E-value=34 Score=33.72 Aligned_cols=63 Identities=14% Similarity=0.095 Sum_probs=49.4
Q ss_pred eEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHH
Q 007185 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCD 73 (614)
Q Consensus 5 lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~ 73 (614)
+.+||.+-|.-..|.+..+ -+-.+|..+|++-++|...+-|.|.|.|.+|...-|.-+.-+.+
T Consensus 2 i~~~V~l~d~~~~~~v~~~------tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~ 64 (294)
T 1ef1_A 2 ISVRVTTMDAELEFAIQPN------TTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTA 64 (294)
T ss_dssp EEEEEEETTEEEEEEECTT------CBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGG
T ss_pred EEEEEEECCceEEEEECCC------CcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHh
Confidence 6799999987444444422 35668999999999999989999999999998877766666654
No 56
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=51.65 E-value=52 Score=25.87 Aligned_cols=75 Identities=15% Similarity=0.250 Sum_probs=50.0
Q ss_pred CCceeEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCc
Q 007185 1 MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLK 80 (614)
Q Consensus 1 m~~~lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~ 80 (614)
|+. +.|+|+.-+. +.+.+.+.. +-++.+|..+|++..+++++ ...|.| +|. .|.|+.-|.++=.+...
T Consensus 1 m~~-m~i~vk~~~g-~~~~~~v~~----~~tv~~lk~~i~~~~gi~~~-~qrL~~---~G~--~L~d~~tl~~~~i~~~~ 68 (79)
T 2uyz_B 1 MEY-IKLKVIGQDS-SEIHFKVKM----TTHLKKLKESYCQRQGVPMN-SLRFLF---EGQ--RIADNHTPKELGMEEED 68 (79)
T ss_dssp CCE-EEEEEECTTC-CEEEEEEET----TSCTHHHHHHHHHHHTCCGG-GEEEEE---TTE--ECCTTCCHHHHTCCTTE
T ss_pred CCe-EEEEEECCCC-CEEEEEECC----CChHHHHHHHHHHHHCCCcc-cEEEEE---CCE--EeCCCCCHHHcCCCCCC
Confidence 555 6777775332 445566543 24778899999999999654 888888 465 45677777776445556
Q ss_pred eEEEEEE
Q 007185 81 FLRIDVH 87 (614)
Q Consensus 81 ~L~i~V~ 87 (614)
.|.+.+.
T Consensus 69 ~i~l~~~ 75 (79)
T 2uyz_B 69 VIEVYQE 75 (79)
T ss_dssp EEEEEEC
T ss_pred EEEEEEe
Confidence 6666553
No 57
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=51.37 E-value=31 Score=30.64 Aligned_cols=72 Identities=18% Similarity=0.232 Sum_probs=47.8
Q ss_pred eeEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceEE
Q 007185 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLR 83 (614)
Q Consensus 4 ~lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L~ 83 (614)
.+.|+||.. -+.|.+.+.. +.+..+|+.+|++.++++ -....|.|. |- .|.|+.-|.++=.+.-..|.
T Consensus 32 ~m~I~Vk~~--g~~~~l~v~~----~~TV~~LK~~I~~~~gip-~~~QrLi~~---Gk--~L~D~~tL~dygI~~gstI~ 99 (125)
T 1j8c_A 32 IIKVTVKTP--KEKEEFAVPE----NSSVQQFKEAISKRFKSQ-TDQLVLIFA---GK--ILKDQDTLIQHGIHDGLTVH 99 (125)
T ss_dssp CEEEEEECS--SCEEEEEECT----TCCHHHHHHHHHHHHCSC-SSSEEEEET---TE--EESTTSCGGGTTCSSSEEEE
T ss_pred cEEEEEEeC--CeEEEEEECC----CCcHHHHHHHHHHHHCcC-cceEEEEEC---CE--EcCCCCCHHHcCCCCCCEEE
Confidence 366777764 2456777653 357889999999999986 457888885 32 35677677775334455555
Q ss_pred EEEE
Q 007185 84 IDVH 87 (614)
Q Consensus 84 i~V~ 87 (614)
+.+.
T Consensus 100 lv~~ 103 (125)
T 1j8c_A 100 LVIK 103 (125)
T ss_dssp EEEC
T ss_pred EEec
Confidence 5443
No 58
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=51.13 E-value=73 Score=26.57 Aligned_cols=72 Identities=22% Similarity=0.351 Sum_probs=48.6
Q ss_pred eEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCc-hhHHHHHHccCceEE
Q 007185 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDD-DDLCDVMRQRLKFLR 83 (614)
Q Consensus 5 lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd-~DL~~a~~q~l~~L~ 83 (614)
+.|.||.... .|.+.+.. +-+..+|+.+|++..+++ -....|.|.. -.|.|+ .-|.++=.+....|.
T Consensus 16 ~~I~Vk~~~~--~~~l~v~~----~~TV~~LK~~I~~~~gip-~~~QrLi~~G-----k~L~D~~~tL~~ygI~~gstl~ 83 (94)
T 2kan_A 16 IHVTVKFPSK--QFTVEVDR----TETVSSLKDKIHIVENTP-IKRMQLYYSG-----IELADDYRNLNEYGITEFSEIV 83 (94)
T ss_dssp EEEEEECSSC--EEEEEECT----TCBHHHHHHHHHHHSSSC-TTTEEEEETT-----EEECCTTSBHHHHTCCTTEEEE
T ss_pred EEEEEEcCCc--EEEEEECC----CCcHHHHHHHHHHHHCcC-HHHEEEEECC-----EECCCCcccHHHCCCCCCCEEE
Confidence 5566665543 56777753 347789999999999996 4577788863 246677 678876445556666
Q ss_pred EEEEe
Q 007185 84 IDVHL 88 (614)
Q Consensus 84 i~V~l 88 (614)
+.+.+
T Consensus 84 lv~r~ 88 (94)
T 2kan_A 84 VFLKS 88 (94)
T ss_dssp EEECC
T ss_pred EEEeC
Confidence 65543
No 59
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=50.68 E-value=41 Score=28.17 Aligned_cols=68 Identities=16% Similarity=0.242 Sum_probs=44.8
Q ss_pred eeEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceEE
Q 007185 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLR 83 (614)
Q Consensus 4 ~lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L~ 83 (614)
.+.|+|++++ +.|.+.+.. +-+..+|+.+|++..+++++ ...|.|... + | ||..|.++=.+....|.
T Consensus 17 ~~~i~Vk~~g--~~~~i~v~~----~~TV~~LK~~I~~~tgip~~-~QrL~~~Gk---~--L-dd~tL~~~~i~~g~~i~ 83 (95)
T 1v86_A 17 LVDLKIIWNK--TKHDVKVPL----DSTGSELKQKIHSITGLPPA-MQKVMYKGL---V--P-EDKTLREIKVTSGAKIM 83 (95)
T ss_dssp CEEEEEEETT--EEEEEEECT----TSBHHHHHHHHHHHHCSCST-TCCCBSSSB---C--C-SSSBHHHHCCCTTEEEE
T ss_pred eEEEEEEECC--EEEEEEECC----CCcHHHHHHHHHHHHCcCHH-HeEEEECCe---e--C-CcCcHHHCCCCCCCEEE
Confidence 3667888876 566777653 35788999999999999765 555667543 2 4 66677775333334443
Q ss_pred E
Q 007185 84 I 84 (614)
Q Consensus 84 i 84 (614)
|
T Consensus 84 l 84 (95)
T 1v86_A 84 V 84 (95)
T ss_dssp E
T ss_pred E
Confidence 3
No 60
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=49.42 E-value=34 Score=30.87 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=21.2
Q ss_pred CCCCCCEEEEEEEEecCCCCceEE
Q 007185 541 GVPVEGEIDIAVDFTAPELPGRYI 564 (614)
Q Consensus 541 ~v~PGeevdVSV~L~AP~~pG~yi 564 (614)
.++|||+..+.+.+-.+..||.|+
T Consensus 73 tl~pGE~~~f~~~w~~~~~pG~Yt 96 (120)
T 3isy_A 73 TLESGETYDFSDVWKEVPEPGTYE 96 (120)
T ss_dssp EECTTCEEEEEEEESSCCCSEEEE
T ss_pred EECCCCEEEEEEEeCCCCCCccEE
Confidence 378999999999998778899996
No 61
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=47.90 E-value=48 Score=29.46 Aligned_cols=65 Identities=15% Similarity=0.212 Sum_probs=47.1
Q ss_pred eeCCCCcEEEEEEEEeccCCCCCCCcEEEEe-cCCCCCCCCceeeeccCCCCCCCCEEEEEEEEecCC-CCceEEE
Q 007185 492 MMAPSTPFTKIWRMRNTGNLAWPRGSQLVWI-GGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPE-LPGRYIS 565 (614)
Q Consensus 492 ~V~Pgt~FtKtWrLrN~Gt~~WP~G~~L~fv-gGd~m~~~~sv~~~ipv~~v~PGeevdVSV~L~AP~-~pG~yiS 565 (614)
.+.+|+..+-.=.|+|.|+.. ...+.+.|. +|...+ ..++..|.+|++..|++... |. ..|.|.-
T Consensus 14 ~~~~~~~~ti~atVkN~G~~~-a~~~~V~ly~~g~~v~-------t~~v~~LaaG~s~tv~~~w~-~~~~~G~ytl 80 (114)
T 2l0d_A 14 TVVPNTVNTMTATIENQGNKD-STSFNVSLLVDGIVVD-------TQTVTSLESENSTNVDFHWT-LDGTANSYTL 80 (114)
T ss_dssp EECTTSEEEEEEEEEECSSSC-BCCEEEEEEETTEEEE-------EEEESCBCBTCEEEEEEEEE-CCCSCSEEEE
T ss_pred CcCCCCeEEEEEEEEECCCCC-CCCEEEEEEECCEEEc-------ceecccccCCCEEEEEEEEe-ecCcCceEEE
Confidence 367788888888999999987 356777664 554222 22445789999999999876 55 5898863
No 62
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=47.48 E-value=12 Score=30.99 Aligned_cols=48 Identities=19% Similarity=0.362 Sum_probs=34.7
Q ss_pred CCceeEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEE
Q 007185 1 MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTY 55 (614)
Q Consensus 1 m~~~lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY 55 (614)
|...++|.++--+-..|+++.-+ =++.+|..+|++.|+++ ...+.|+|
T Consensus 1 ~~~~m~lRvrs~~G~~Ri~v~~~------~t~~~L~~~I~~~~~i~-~~~~~l~~ 48 (80)
T 2pjh_A 1 MAESIIIRVQSPDGVKRITATKR------ETAATFLKKVAKEFGFQ-NNGFSVYI 48 (80)
T ss_dssp -CCCCCCEEECSSEEEECCCCSS------CCHHHHHHHHHHHTCCC-TTTCCCCC
T ss_pred CCCcEEEEEECCCCCEEEEcCCc------ChHHHHHHHHHHHcCCC-CCcceEEe
Confidence 66678888888877888875521 27889999999999975 34555544
No 63
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=47.04 E-value=13 Score=30.81 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=26.7
Q ss_pred HHHHHHHhcCCCCCCcceEEEecCCCCEEEe
Q 007185 35 LRAKIKSLFNFPHDSDLTLTYVDEDGDIVTL 65 (614)
Q Consensus 35 L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl 65 (614)
+=.-|++.|.|..++.|.+++-|.||++|-.
T Consensus 29 IPaeI~kaLgIk~gD~fel~ve~kdgeIvLc 59 (68)
T 3o27_A 29 IPKDIAEALDIKPDDTFILNMEQKDGDIVLS 59 (68)
T ss_dssp ECHHHHHHTTCCTTCCEEEEEEEETTEEEEE
T ss_pred CcHHHHHHhCCCCCCEEEEEEecCCCeEEEE
Confidence 3467889999999999999999999998753
No 64
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=46.35 E-value=35 Score=27.92 Aligned_cols=74 Identities=23% Similarity=0.258 Sum_probs=48.1
Q ss_pred EEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceEEEE
Q 007185 6 VIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRID 85 (614)
Q Consensus 6 viKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L~i~ 85 (614)
.|+|+.-+ =+.|.+.+.. +-+..+|+.+|++.+++++ +...|.|... .|.|+..|.++=.+.-..|.+.
T Consensus 3 ~i~vk~~~-g~~~~~~v~~----~~TV~~LK~~i~~~~gip~-~~qrL~~~G~-----~L~d~~tL~~~~i~~~~~i~l~ 71 (96)
T 3k9o_B 3 QIFVKTLT-GKTITLEVEP----SDTIENVKAKIQDKEGIPP-DQQRLIFAGK-----QLEDGRTLSDYNIQKESTLHLV 71 (96)
T ss_dssp EEEEEETT-CCEEEEECCT----TCBHHHHHHHHHHHHCCCG-GGEEEEETTE-----ECCTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEeCC-CCEEEEEECC----CCCHHHHHHHHHhhhCCCh-hHEEEEECCE-----ECCCCCcHHHcCCCCCCEEEEE
Confidence 34555422 1345666643 3588899999999999964 5778889432 3677777777533445667776
Q ss_pred EEecC
Q 007185 86 VHLNN 90 (614)
Q Consensus 86 V~l~~ 90 (614)
+.+.+
T Consensus 72 ~r~~g 76 (96)
T 3k9o_B 72 LRLRG 76 (96)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 66544
No 65
>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV}
Probab=45.59 E-value=82 Score=28.56 Aligned_cols=64 Identities=17% Similarity=0.306 Sum_probs=41.9
Q ss_pred CcEEEEEEEEeccCCCCCCCcEEEEecCCCCCCCCceeeeccCCCCCCCCEEEEE--EEEecCCCCceEEEEEEEECCCC
Q 007185 497 TPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIA--VDFTAPELPGRYISYWRMSSPSG 574 (614)
Q Consensus 497 t~FtKtWrLrN~Gt~~WP~G~~L~fvgGd~m~~~~sv~~~ipv~~v~PGeevdVS--V~L~AP~~pG~yiSyWRL~tpdG 574 (614)
+--...|+|.+. + | .+.-|.|+= .+. +-| -|.|||+..-+ ..|.+| .|.-..++.|.+++|
T Consensus 46 QL~sRhW~Itd~-~-----g-~~~eV~G~G--VVG----~qP--~L~PGe~f~YtSg~~L~tp--~G~M~G~y~m~~~~G 108 (127)
T 2f1e_A 46 RLVARHWQITDG-N-----G-RTEQVDGEG--VVG----EQP--WLRPGEAFHYTSGVLLETE--QGQMQGHYDMVADDG 108 (127)
T ss_dssp EEEEEEEEEEET-T-----S-CEEEEEESS--BTT----BCC--EECTTCEEEEEEEEEESSS--CEEEEEEEEEEETTC
T ss_pred EEEeceEEEEeC-C-----C-CEEEEECCC--eec----CCC--cCCCCCceEEeCCcCcCCC--cEEEEEEEEEEECCC
Confidence 556677888863 1 1 244566652 111 123 37899987775 567666 699999999999887
Q ss_pred Ccc
Q 007185 575 VKF 577 (614)
Q Consensus 575 ~~F 577 (614)
..|
T Consensus 109 ~~F 111 (127)
T 2f1e_A 109 TEF 111 (127)
T ss_dssp CEE
T ss_pred CEE
Confidence 644
No 66
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=44.81 E-value=48 Score=25.62 Aligned_cols=58 Identities=19% Similarity=0.342 Sum_probs=39.4
Q ss_pred eEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHH
Q 007185 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDV 74 (614)
Q Consensus 5 lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a 74 (614)
+.|.|+.++ +.+.+.+.. +-+..+|+.+|++.++++ -....|.|.. - .|.|+.-|.++
T Consensus 5 m~i~vk~~g--~~~~~~v~~----~~tV~~LK~~i~~~~~i~-~~~qrL~~~g---k--~L~d~~tL~~~ 62 (77)
T 2bwf_A 5 LNIHIKSGQ--DKWEVNVAP----ESTVLQFKEAINKANGIP-VANQRLIYSG---K--ILKDDQTVESY 62 (77)
T ss_dssp EEEEEEETT--EEEEEEECT----TCBHHHHHHHHHHHHCCC-GGGEEEEETT---E--ECCTTSBTGGG
T ss_pred EEEEEEECC--EEEEEEECC----CCcHHHHHHHHHHHhCCC-HHHEEEEECC---e--EcCCCCCHHHc
Confidence 456666643 456666653 357889999999999986 4578888863 2 35666666664
No 67
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=44.25 E-value=84 Score=25.73 Aligned_cols=73 Identities=21% Similarity=0.347 Sum_probs=46.6
Q ss_pred eEEEEeeCC-cceeeeeecCCCCCccccHHHHHHHHHHhc--CCCCCCcceEEEecCCCCEEEecCchhHHHHH--HccC
Q 007185 5 MVIKVKYGD-TLRRFNARVDENEKLDLDIDGLRAKIKSLF--NFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVM--RQRL 79 (614)
Q Consensus 5 lviKvk~gd-dlRRf~~~~~~n~~~~l~~~~L~~~i~~~F--~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~--~q~l 79 (614)
+.|+||..+ ....|.+.+.. +-+..+|+.+|++.+ +++ -++..|.|. | -.|.|+..|.++. .+.-
T Consensus 8 m~i~Vk~~~~~~~~~~v~v~~----~~TV~~lK~~I~~~~~~~i~-~~~QrLi~~---G--k~L~D~~tL~~~~~~i~~~ 77 (93)
T 1wgd_A 8 VTLLVKSPNQRHRDLELSGDR----GWSVGHLKAHLSRVYPERPR-PEDQRLIYS---G--KLLLDHQCLRDLLPKQEKR 77 (93)
T ss_dssp CEEEEECSSSSCCCEEEECCT----TSCHHHHHHHHHHHSTTCCC-TTTCEEEET---T--EECCSSSCHHHHSCSSSCS
T ss_pred EEEEEEeCCCCeEEEEEecCC----CCcHHHHHHHHHHHhcCCCC-hHHeEEEEC---C--EECcCcCCHHHHhcCCCCC
Confidence 455555432 23355666532 357889999999999 775 457788886 4 2567888888873 3445
Q ss_pred ceEEEEEE
Q 007185 80 KFLRIDVH 87 (614)
Q Consensus 80 ~~L~i~V~ 87 (614)
..|.+.+.
T Consensus 78 ~~i~lv~~ 85 (93)
T 1wgd_A 78 HVLHLVCN 85 (93)
T ss_dssp EEEEEECC
T ss_pred CEEEEEeC
Confidence 55655443
No 68
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=44.14 E-value=59 Score=26.58 Aligned_cols=70 Identities=20% Similarity=0.171 Sum_probs=45.5
Q ss_pred eEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceEEE
Q 007185 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRI 84 (614)
Q Consensus 5 lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L~i 84 (614)
+.||.--| +.|.+.+.. +-+..+|..+|++..+++ -+...|.|.. - +-|.|+.-|.++=.+....|.+
T Consensus 13 i~vk~l~g---~~~~l~v~~----~~TV~~LK~~I~~~~gip-~~~QrLi~~G---k-~lL~D~~tL~~y~I~~gs~i~l 80 (84)
T 2kk8_A 13 FLVENLNG---SSFELEVDY----RDTLLVVKQKIERSQHIP-VSKQTLIVDG---I-VILREDLTVEQCQIVPTSDIQL 80 (84)
T ss_dssp EEEEETTS---CEEEEEECT----TSBHHHHHHHHHHHHTCC-GGGEEEEETT---E-ECCCSSSBHHHHTCCTTSCEEE
T ss_pred EEEEecCC---cEEEEEECC----CChHHHHHHHHHHHHCcC-hHHEEEEECC---E-EecCCcCCHHHcCCCCCCEEEE
Confidence 34444445 556677653 347889999999999986 4577888863 2 1167777788864444555655
Q ss_pred EE
Q 007185 85 DV 86 (614)
Q Consensus 85 ~V 86 (614)
.+
T Consensus 81 v~ 82 (84)
T 2kk8_A 81 EV 82 (84)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 69
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=43.80 E-value=1.2e+02 Score=24.18 Aligned_cols=76 Identities=22% Similarity=0.256 Sum_probs=48.0
Q ss_pred eeEEEEeeCCcceeeeee-cCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceE
Q 007185 4 TMVIKVKYGDTLRRFNAR-VDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFL 82 (614)
Q Consensus 4 ~lviKvk~gddlRRf~~~-~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L 82 (614)
.+.|+||.-+--+.|.+. +.. +-+..+|+.+|++..+++ -....|.|. |- .|.|+.-|.++=.+.-..|
T Consensus 7 ~m~i~Vk~~~g~~~~~l~~v~~----~~tV~~lK~~i~~~~gip-~~~qrL~~~---gk--~L~d~~tL~~~~i~~g~~i 76 (89)
T 1wy8_A 7 GMWIQVRTIDGSKTCTIEDVSR----KATIEELRERVWALFDVR-PECQRLFYR---GK--QLENGYTLFDYDVGLNDII 76 (89)
T ss_dssp CEEEEEEETTCSCEEEEEEECT----TCBHHHHHHHHHHHSCCC-TTTEEEEET---TE--ECCSSSBHHHHTCCTTCEE
T ss_pred cEEEEEEECCCCceEEEEecCC----CCCHHHHHHHHHHHHCcC-hhhEEEEEC---Ce--ECCCCCCHHHCCCCCCCEE
Confidence 355666642211345663 543 357889999999999986 557888884 42 4567777877633445666
Q ss_pred EEEEEec
Q 007185 83 RIDVHLN 89 (614)
Q Consensus 83 ~i~V~l~ 89 (614)
.+.+.+.
T Consensus 77 ~l~~~~~ 83 (89)
T 1wy8_A 77 QLLVRPD 83 (89)
T ss_dssp EEEECCC
T ss_pred EEEEeCC
Confidence 6665443
No 70
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=43.13 E-value=1.2e+02 Score=26.01 Aligned_cols=76 Identities=14% Similarity=0.164 Sum_probs=50.7
Q ss_pred eeEEEEeeCC---------cceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHH
Q 007185 4 TMVIKVKYGD---------TLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDV 74 (614)
Q Consensus 4 ~lviKvk~gd---------dlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a 74 (614)
.+.|+|+.-+ +=+.+.+.+.. +-+..+|..+|+....+++ ....|.|. |- .|.|+.-|.++
T Consensus 25 ~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~----~~TV~~LK~~I~~~~gip~-~~QrL~~~---Gk--~L~D~~tL~~y 94 (115)
T 1we7_A 25 PVSIKVQVPNMQDKTEWKLNGQGLVFTLPL----TDQVSVIKVKIHEATGMPA-GKQKLQYE---GI--FIKDSNSLAYY 94 (115)
T ss_dssp CEEEEEEECCCSSSCSSCCSSEEEEEEECS----CSBTHHHHHHHHHHSSCCT-TTEEEEET---TE--EECTTSBHHHH
T ss_pred CEEEEEEcCCCccccccccCCeEEEEEECC----CCCHHHHHHHHHHHHCCCh-HHEEEEEC---CE--ECCCCCCHHHC
Confidence 3566666643 12566677653 3577899999999999864 57788884 43 46777778886
Q ss_pred HHccCceEEEEEEec
Q 007185 75 MRQRLKFLRIDVHLN 89 (614)
Q Consensus 75 ~~q~l~~L~i~V~l~ 89 (614)
=.+....|.+.+.+.
T Consensus 95 ~i~~g~~i~lv~rl~ 109 (115)
T 1we7_A 95 NMASGAVIHLALKER 109 (115)
T ss_dssp TCCSSCEEEEEECCC
T ss_pred CCCCCCEEEEEEEcC
Confidence 445556676666443
No 71
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=41.41 E-value=51 Score=25.19 Aligned_cols=61 Identities=25% Similarity=0.343 Sum_probs=39.9
Q ss_pred eeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceEEEEEE
Q 007185 17 RFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRIDVH 87 (614)
Q Consensus 17 Rf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L~i~V~ 87 (614)
.+.+.++. +-+..+|+.+|++.++++ -....|.|. |- .|.|+.-|.++=.+.-..|.+.+.
T Consensus 12 ~~~i~v~~----~~tv~~lK~~i~~~~~i~-~~~q~L~~~---g~--~L~d~~tL~~~~i~~g~~i~l~~~ 72 (76)
T 3a9j_A 12 TITLEVEP----SDTIENVKAKIQDKEGIP-PDQQRLIFA---GK--QLEDGRTLSDYNIQRESTLHLVLR 72 (76)
T ss_dssp EEEEECCT----TCBHHHHHHHHHHHHCCC-GGGEEEEET---TE--ECCTTCBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEECC----CCcHHHHHHHHHHHHCcC-HHHeEEEEC---Ce--ECCCCCcHHHcCCCCCCEEEEEEe
Confidence 44566543 357889999999999996 458889995 32 356666666642233455555543
No 72
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=41.00 E-value=14 Score=38.16 Aligned_cols=36 Identities=14% Similarity=0.394 Sum_probs=28.4
Q ss_pred ccCceecCCCCCCCccc---cceecCCCCCcchhhhhhhhC
Q 007185 376 FHKGVRCDGCGVHPITG---PRFKSKVKDDYDLCSICFAAM 413 (614)
Q Consensus 376 vH~GV~CDgC~~~pI~G---~RYKCsvC~DyDLC~~C~a~~ 413 (614)
.+.-..|+.|+ ..+.| .+|+|..|- +..|..|....
T Consensus 354 ~~~~t~C~~C~-~~~~g~~~qg~~C~~C~-~~~h~~C~~~~ 392 (406)
T 2vrw_B 354 FEETTSCKACQ-MLLRGTFYQGYRCYRCR-APAHKECLGRV 392 (406)
T ss_dssp CSSCCBCTTTC-CBCCSSSSCEEEETTTC-CEECGGGGGGS
T ss_pred CCCCCCCcccc-chhceeCCCCCCCCCCc-CccchhhhhhC
Confidence 34558899999 55655 789999995 88999998763
No 73
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=40.63 E-value=40 Score=27.52 Aligned_cols=71 Identities=24% Similarity=0.270 Sum_probs=45.2
Q ss_pred eEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceEEE
Q 007185 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRI 84 (614)
Q Consensus 5 lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L~i 84 (614)
+.|+||.-+ =+.|.+.+.. +-+..+|+.+|++.+++++ ....|.|. |- .|.|+..|.++=.+.-..|.+
T Consensus 18 m~i~Vk~~~-g~~~~l~v~~----~~TV~~LK~~I~~~~gip~-~~qrL~~~---Gk--~L~D~~tL~~~gi~~g~~i~l 86 (91)
T 3v6c_B 18 MQIFVNTLT-GTHITLEVEP----SDTIENVKAKIQDKEGIPP-DQQRLIFA---GK--QLEDGRTLSDYNIQKESTLHL 86 (91)
T ss_dssp EEEEEECTT-SCEEEEEECT----TCBHHHHHHHHHHHHCCCG-GGCEEEET---TE--ECCTTCBTGGGTCCTTCEEEE
T ss_pred EEEEEEeCC-CCEEEEEECC----CCCHHHHHHHHHhhhCCCh-hhEEEEEC---Ce--ECCCcCcHHHCCCCCCCEEEE
Confidence 556666322 1455666653 3588899999999999864 56788884 32 367777777753344445554
Q ss_pred EE
Q 007185 85 DV 86 (614)
Q Consensus 85 ~V 86 (614)
.+
T Consensus 87 ~~ 88 (91)
T 3v6c_B 87 VL 88 (91)
T ss_dssp EC
T ss_pred EE
Confidence 43
No 74
>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1
Probab=40.05 E-value=94 Score=28.17 Aligned_cols=64 Identities=19% Similarity=0.374 Sum_probs=41.0
Q ss_pred CcEEEEEEEEeccCCCCCCCcEEEEecCCCCCCCCceeeeccCCCCCCCCEEEEE--EEEecCCCCceEEEEEEEECCCC
Q 007185 497 TPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIA--VDFTAPELPGRYISYWRMSSPSG 574 (614)
Q Consensus 497 t~FtKtWrLrN~Gt~~WP~G~~L~fvgGd~m~~~~sv~~~ipv~~v~PGeevdVS--V~L~AP~~pG~yiSyWRL~tpdG 574 (614)
+--.+.|+|.+. + | .+.-|.|+-. +. +-| -|.|||+..-+ ..|.+| .|.-..++.|.+.+|
T Consensus 45 QL~sRhW~Itd~-~-----g-~~~eV~G~GV--VG----~qP--~L~PGe~f~YtSg~~L~tp--~G~M~G~y~m~~~~G 107 (126)
T 1xvs_A 45 QLMSRRWLITDA-D-----G-KQTVVEGDGV--VG----EQP--RIKANDEYTYSSGTALDTP--VGVMQGQYLMIDEQG 107 (126)
T ss_dssp EEEEEEEEEEET-T-----C-CEEEEEEESB--TT----BCC--EECTTCEEEEEEEEEESSS--EEEEEEEEEEECTTS
T ss_pred EEEecEEEEEeC-C-----C-CEEEEECCce--Ec----CCC--cCCCCCceEEeCCcCcCCC--cEEEEEEEEEEECCC
Confidence 445677888762 1 1 2345555421 11 123 37899987775 567666 699999999999888
Q ss_pred Ccc
Q 007185 575 VKF 577 (614)
Q Consensus 575 ~~F 577 (614)
..|
T Consensus 108 ~~F 110 (126)
T 1xvs_A 108 ESF 110 (126)
T ss_dssp CEE
T ss_pred CEE
Confidence 654
No 75
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=39.42 E-value=20 Score=30.48 Aligned_cols=48 Identities=19% Similarity=0.248 Sum_probs=31.9
Q ss_pred cccCceecCCCCCCCccccceecCCCC---Ccchhhhhhhh-CCCCcceEEecC
Q 007185 375 MFHKGVRCDGCGVHPITGPRFKSKVKD---DYDLCSICFAA-MGSEADYIRIDR 424 (614)
Q Consensus 375 vvH~GV~CDgC~~~pI~G~RYKCsvC~---DyDLC~~C~a~-~~~~H~~~ki~~ 424 (614)
..|+|-.|-. +-..-..-|+|..|. .+-||..||.. .|..|.+.....
T Consensus 4 ~~h~g~~Cg~--vf~~ge~~Y~C~~C~~d~tcvlC~~CF~~s~H~gH~~~~~~s 55 (82)
T 3nis_A 4 HKHTGRNCGR--KFKIGEPLYRCHECGCDDTCVLCIHCFNPKDHVNHHVCTDIC 55 (82)
T ss_dssp CCCTTSCCCC--BCCTTCEEEEETTTBSSTTCCBCTTTCCGGGGTTSCEEEEEC
T ss_pred cccCCCCCCC--cccCCCEEEEeeccCCCCCceEchhhCCCCCcCCceEEEEEe
Confidence 4577766642 112345669999994 35689999977 466788876543
No 76
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=39.25 E-value=39 Score=26.94 Aligned_cols=71 Identities=15% Similarity=0.249 Sum_probs=45.7
Q ss_pred eEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceEEE
Q 007185 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRI 84 (614)
Q Consensus 5 lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L~i 84 (614)
+.|+|+.-+ =+.|.+.+.. +-+..+|+.+|++.+.++ -+...|-|... .|.|+.-|.++=.+.-..|.+
T Consensus 13 m~i~vk~~~-g~~~~~~v~~----~~tV~~lK~~i~~~~gip-~~~qrL~~~G~-----~L~d~~tL~~~~i~~~~~i~l 81 (88)
T 3dbh_I 13 MLIKVKTLT-GKEIEIDIEP----TDKVERIKERVEEKEGIP-PQQQRLIYSGK-----QMNDEKTAADYKILGGSVLHL 81 (88)
T ss_dssp EEEEEECTT-SCEEEEEECT----TCBHHHHHHHHHHHHCCC-GGGCCEEETTE-----ECCTTSBGGGGTCCTTCEEEE
T ss_pred EEEEEEcCC-CCEEEEEECC----CCCHHHHHHHHHHHHCcC-HHHEEEEECCe-----ECCCCCcHHHcCCCCCCEEEE
Confidence 567777422 1445666653 347889999999999986 45778888432 366776777753344455555
Q ss_pred EE
Q 007185 85 DV 86 (614)
Q Consensus 85 ~V 86 (614)
.+
T Consensus 82 ~~ 83 (88)
T 3dbh_I 82 VL 83 (88)
T ss_dssp CC
T ss_pred EE
Confidence 44
No 77
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=39.11 E-value=79 Score=26.65 Aligned_cols=70 Identities=20% Similarity=0.269 Sum_probs=45.1
Q ss_pred eEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceEEE
Q 007185 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRI 84 (614)
Q Consensus 5 lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L~i 84 (614)
+.|+|+..+ +.|.+.+.. +-+..+|+.+|++.++++ -....|.|. |- .|.|+.-|.++=.+....|.+
T Consensus 26 m~I~Vk~~g--~~~~l~v~~----~~TV~~LK~~I~~~~gip-~~~qrLi~~---Gk--~L~D~~tL~~~gI~~g~~I~l 93 (101)
T 2klc_A 26 MKVTVKTPK--EKEEFAVPE----NSSVQQFKEEISKRFKSH-TDQLVLIFA---GK--ILKDQDTLSQHGIHDGLTVHL 93 (101)
T ss_dssp EEEEEECSS--CEEEEEECS----CCCHHHHHHHHHHHHTCC-GGGEEEEET---TE--EECTTCCTGGGTCCTTCEEEE
T ss_pred EEEEEEeCC--cEEEEEECC----CCCHHHHHHHHHHHHCcC-hhhEEEEEC---CE--ECCCcCcHHHcCCCCCCEEEE
Confidence 556666542 456677653 357889999999999986 457888885 42 356666666643333455555
Q ss_pred EE
Q 007185 85 DV 86 (614)
Q Consensus 85 ~V 86 (614)
.+
T Consensus 94 ~~ 95 (101)
T 2klc_A 94 VI 95 (101)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 78
>1xq4_A Protein APAG; all beta protein, structural genomics, protein structure initiative, PSI, northeast structural genomics consortium, NESG; 2.70A {Bordetella pertussis} SCOP: b.1.23.1
Probab=39.04 E-value=88 Score=28.91 Aligned_cols=64 Identities=11% Similarity=0.224 Sum_probs=40.2
Q ss_pred CcEEEEEEEEeccCCCCCCCcEEEEecCCCCCCCCceeeeccCCCCCCCCEEEEE--EEEecCCCCceEEEEEEEECCCC
Q 007185 497 TPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIA--VDFTAPELPGRYISYWRMSSPSG 574 (614)
Q Consensus 497 t~FtKtWrLrN~Gt~~WP~G~~L~fvgGd~m~~~~sv~~~ipv~~v~PGeevdVS--V~L~AP~~pG~yiSyWRL~tpdG 574 (614)
+--...|+|.+. + | .+.-|.|+= .+. +-| -|.|||+..-+ +.|.+| .|.-..++.|.+++|
T Consensus 50 QL~sRhW~ItD~-~-----G-~~~eV~G~G--VVG----eqP--vL~PGe~F~YtSg~~L~Tp--~G~M~G~y~m~~~~G 112 (139)
T 1xq4_A 50 QVISRHWIITDG-E-----E-RVQEVRGLG--VVG----QQP--LLAPGETFEYTSGCPLPTP--IGTMRGTYHCVGENG 112 (139)
T ss_dssp EEEEEEEEEECT-T-----S-CEEEEEEES--SSS----CCC--EECTTCEEEEEEEEEESSS--EEEEEEEEEEEETTS
T ss_pred EEEecEEEEEeC-C-----C-CEEEEECCC--eec----CCC--cCCCCCceEEcCCcCcCCC--ceEEEEEEEEEeCCC
Confidence 445567777752 1 1 244555542 111 123 37899987765 556665 799999999999887
Q ss_pred Ccc
Q 007185 575 VKF 577 (614)
Q Consensus 575 ~~F 577 (614)
..|
T Consensus 113 ~~F 115 (139)
T 1xq4_A 113 IPF 115 (139)
T ss_dssp CEE
T ss_pred CEE
Confidence 644
No 79
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=38.81 E-value=91 Score=33.63 Aligned_cols=46 Identities=13% Similarity=0.333 Sum_probs=37.9
Q ss_pred CCCCCCEEEEEEEEecCCCCceEEEEEEEECCCCC-ccCCeEEEEEEE
Q 007185 541 GVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGV-KFGQRVWVLIQV 587 (614)
Q Consensus 541 ~v~PGeevdVSV~L~AP~~pG~yiSyWRL~tpdG~-~FG~~LWv~I~V 587 (614)
.++.|.+.++.|.|+| .+||+|--+=.|.-.++- .-|.--|+.|+=
T Consensus 111 ~l~~G~~Y~fki~lka-R~PG~~HVH~~lNV~~~Gp~iGPG~~v~I~G 157 (419)
T 3rfr_A 111 SLEIGKDYAFSINLRG-RRAGRWHVHAQINVEGGGPIIGPGQWIEIKG 157 (419)
T ss_dssp CCCTTCEEEEEEEEEE-CSCEEEEEEEEEEETTTEEEEEEEEEEEEES
T ss_pred EecCCCeEeEEEEEec-ccCcccccceeEeeccCCCCcCCceEEEEcc
Confidence 3678999999999998 899999888777765554 489999998863
No 80
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=38.26 E-value=64 Score=27.60 Aligned_cols=47 Identities=19% Similarity=0.350 Sum_probs=30.0
Q ss_pred eEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEec
Q 007185 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVD 57 (614)
Q Consensus 5 lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~D 57 (614)
+.|+||--+-.-|+.+. + .+-++.+|+.+|++.++++++ ...|.|..
T Consensus 8 M~irvrs~~G~~~v~v~--~---~~~Tv~~LK~kI~~~~gip~~-~QrL~~~~ 54 (107)
T 1wf9_A 8 TMLRVRSRDGLERVSVD--G---PHITVSQLKTLIQDQLQIPIH-NQTLSTNR 54 (107)
T ss_dssp EEEEEECSSCEEEEEEC--C---TTSBHHHHHHHHHHHSCCCTT-TCCCBSSG
T ss_pred EEEEEECCCCCEEEEEC--C---CCCcHHHHHHHHHHHhCcCcc-cCEEEECC
Confidence 56777654433345443 1 234788999999999998765 45565543
No 81
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=37.93 E-value=16 Score=30.14 Aligned_cols=43 Identities=16% Similarity=0.205 Sum_probs=31.4
Q ss_pred ecCCCCCCCccccceecCCCCCcchhhhhhhhCC-----CCcceEEecCCcC
Q 007185 381 RCDGCGVHPITGPRFKSKVKDDYDLCSICFAAMG-----SEADYIRIDRPVH 427 (614)
Q Consensus 381 ~CDgC~~~pI~G~RYKCsvC~DyDLC~~C~a~~~-----~~H~~~ki~~Pv~ 427 (614)
-|-.|.-. .-++|.-|.+-=+|..||...| ..|..+++..|-.
T Consensus 10 WC~ICneD----AtlrC~gCdgDLYC~rC~rE~H~~~d~r~Hk~v~y~~~~k 57 (67)
T 2d8v_A 10 WCCICNED----ATLRCAGCDGDLYCARCFREGHDNFDLKEHQTSPYHPRRP 57 (67)
T ss_dssp SCTTTCSC----CCEEETTTTSEEECSSHHHHHTTTSSTTTCCEECCCCSSS
T ss_pred eeEEeCCC----CeEEecCCCCceehHHHHHHHccchhhhccceeeccCCCC
Confidence 46667632 4499999987667999998843 4688888877754
No 82
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=37.78 E-value=14 Score=29.35 Aligned_cols=25 Identities=28% Similarity=0.402 Sum_probs=18.4
Q ss_pred ccCceecCCCCCCCc-cc-cceecCCCC
Q 007185 376 FHKGVRCDGCGVHPI-TG-PRFKSKVKD 401 (614)
Q Consensus 376 vH~GV~CDgC~~~pI-~G-~RYKCsvC~ 401 (614)
+.....||.|+ ..| +| .-|||..|.
T Consensus 16 ~~~~~~C~~Cg-~~i~~gkq~~kC~dC~ 42 (61)
T 4b6d_A 16 VIKPESCVPCG-KRIKFGKLSLKCRDCR 42 (61)
T ss_dssp CCSCEECTTTC-CEECTTCEEEEESSSS
T ss_pred ccCCccccccc-CEEEEeeEeeECCCCC
Confidence 44569999997 455 44 459999994
No 83
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=37.72 E-value=1.2e+02 Score=25.81 Aligned_cols=76 Identities=21% Similarity=0.195 Sum_probs=47.8
Q ss_pred eEEEEeeCCc--ceeeeeecCC----CCCc-cccHHHHHHHHHHhc--CCCCCCc-ceEEEecCCCCEEEecCchhHHHH
Q 007185 5 MVIKVKYGDT--LRRFNARVDE----NEKL-DLDIDGLRAKIKSLF--NFPHDSD-LTLTYVDEDGDIVTLVDDDDLCDV 74 (614)
Q Consensus 5 lviKvk~gdd--lRRf~~~~~~----n~~~-~l~~~~L~~~i~~~F--~l~~~~~-~~lkY~DeDGD~VTl~Dd~DL~~a 74 (614)
+.|+||..+. .+.|.+.+.. +=.. +-+..+|+.+|++.. +++++ . ..|-|... .|.|+.-|.++
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~-~~qrLi~~Gk-----~L~D~~tL~~y 86 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDP-ELIDLIYCGR-----KLKDDQTLDFY 86 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCS-SSEEEEETTE-----ECCTTCBHHHH
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChh-hcEEEEECCe-----ECCCCCcHHHc
Confidence 4566665543 3667777542 0112 257889999999999 88654 5 67778642 35677777776
Q ss_pred HHccCceEEEEE
Q 007185 75 MRQRLKFLRIDV 86 (614)
Q Consensus 75 ~~q~l~~L~i~V 86 (614)
=.+....|.+.+
T Consensus 87 ~i~~g~~i~lv~ 98 (107)
T 1x1m_A 87 GIQPGSTVHVLR 98 (107)
T ss_dssp TCCTTCEEEEEE
T ss_pred CCCCCCEEEEEe
Confidence 444455565544
No 84
>1tza_A APAG protein, SOR45; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG, unknown function; 2.40A {Shewanella oneidensis} SCOP: b.1.23.1
Probab=37.39 E-value=85 Score=28.81 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=26.8
Q ss_pred CCCCCEEEEE--EEEecCCCCceEEEEEEEECCCCCcc
Q 007185 542 VPVEGEIDIA--VDFTAPELPGRYISYWRMSSPSGVKF 577 (614)
Q Consensus 542 v~PGeevdVS--V~L~AP~~pG~yiSyWRL~tpdG~~F 577 (614)
|.|||+..-+ +.|.+| .|.-..++.|.+++|..|
T Consensus 75 L~PGe~F~YtSg~~L~Tp--~G~M~G~y~m~~~~G~~F 110 (134)
T 1tza_A 75 IPPNTAYQYTSGTVLDTP--FGIMYGTYGMVSESGEHF 110 (134)
T ss_dssp ECTTEEEEEEEEEEESSS--EEEEEEEEEEEETTCCEE
T ss_pred CCCCCceEEcCCcCcCCC--ceEEEEEEEEEECCCCEE
Confidence 7899987775 456655 889999999999887654
No 85
>2c9r_A COPC, copper resistance protein C; copper transport, copper proteins, copper dissociation const metal-binding, electron transport; 2.0A {Pseudomonas syringae PV} PDB: 1m42_A 1nm4_A 1ot4_A 2c9p_A 2c9q_A
Probab=36.95 E-value=26 Score=30.31 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=24.9
Q ss_pred CEEEEEEEEecCCCCceEEEEEEEECCCCCcc
Q 007185 546 GEIDIAVDFTAPELPGRYISYWRMSSPSGVKF 577 (614)
Q Consensus 546 eevdVSV~L~AP~~pG~yiSyWRL~tpdG~~F 577 (614)
....+++.+. |-.+|.|.-.||....||..-
T Consensus 63 ~~~~~~~~l~-~L~~G~YtV~WrvvS~DGH~~ 93 (102)
T 2c9r_A 63 PKTMVITPAS-PLTAGTYKVDWRAVSSDTFPI 93 (102)
T ss_dssp TTEEEEEESS-CCCSEEEEEEEEECCTTCCCE
T ss_pred CCcEEEEECC-CCCCceEEEEEEEEecCCCcc
Confidence 3456677774 788999999999999999753
No 86
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=36.42 E-value=2.2e+02 Score=24.85 Aligned_cols=37 Identities=14% Similarity=0.139 Sum_probs=22.3
Q ss_pred CCCCCCEEEEEEEEecCCCCceEEEEEEEECCCCCc-cCCeEEE
Q 007185 541 GVPVEGEIDIAVDFTAPELPGRYISYWRMSSPSGVK-FGQRVWV 583 (614)
Q Consensus 541 ~v~PGeevdVSV~L~AP~~pG~yiSyWRL~tpdG~~-FG~~LWv 583 (614)
.|.||++..+++.+ .++|.| |=.|+--|.. -|-+.++
T Consensus 99 ~l~pG~~~~~~~~~---~~~G~y---~f~C~~~~H~~~GM~g~i 136 (140)
T 1qhq_A 99 MLNAGESGSVTFRT---PAPGTY---LYICTFPGHYLAGMKGTL 136 (140)
T ss_dssp CBCTTEEEEEEEEC---CSSEEE---EEECCSTTTTTTTCEEEE
T ss_pred eeCCCceeEEEEEe---CCCeeE---EEEeCCcCHhhcCCEEEE
Confidence 47899998888776 568965 4445432322 3444443
No 87
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A
Probab=36.30 E-value=44 Score=27.63 Aligned_cols=26 Identities=15% Similarity=0.111 Sum_probs=19.2
Q ss_pred CCCCCCEEEEEEEEecCCCCceEEEEEEEEC
Q 007185 541 GVPVEGEIDIAVDFTAPELPGRYISYWRMSS 571 (614)
Q Consensus 541 ~v~PGeevdVSV~L~AP~~pG~yiSyWRL~t 571 (614)
.+.||++..+ +|++|.+||.| |=.|+
T Consensus 66 ~~~pG~~~~~--~f~~~~~~G~y---~y~C~ 91 (106)
T 2gim_A 66 LMSPGQSTST--TFPADAPAGEY---TFYCE 91 (106)
T ss_dssp CCSTTCEEEE--ECCTTCCSEEE---EEECT
T ss_pred eeCCCCEEEE--EEecCCCCceE---EEEeC
Confidence 3689998655 78888999975 44465
No 88
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=35.86 E-value=83 Score=25.58 Aligned_cols=61 Identities=11% Similarity=0.143 Sum_probs=35.9
Q ss_pred EEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEec-CchhHHHH
Q 007185 7 IKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLV-DDDDLCDV 74 (614)
Q Consensus 7 iKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~-Dd~DL~~a 74 (614)
|+||.-+--+++. .++. +-++.+|+.+|++..++++ ..+.|.|.- .|-.+.+. |+.-|.++
T Consensus 3 i~vr~~~G~~~v~-~l~~----~~Tv~~Lk~~I~~~~gi~~-~~qrL~~~~-p~k~l~l~~~~~tL~~~ 64 (86)
T 2kzr_A 3 VRCKAKGGTHLLQ-GLSS----RTRLRELQGQIAAITGIAP-GSQRILVGY-PPECLDLSDRDITLGDL 64 (86)
T ss_dssp EEEEETTEEEEEC-SCCT----TCBHHHHHHHHHHHTCCCT-TTCCCEESS-CCCCCCCCCSSCBTTTS
T ss_pred EEEEcCCCCEEee-ecCC----CCCHHHHHHHHHHHhCCCc-cceEEEeCC-CCcccccCCCCCCHHHc
Confidence 5666655544443 0332 3478899999999999864 577888842 23344344 33344443
No 89
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=35.40 E-value=66 Score=26.22 Aligned_cols=60 Identities=23% Similarity=0.417 Sum_probs=41.3
Q ss_pred ceeEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHH
Q 007185 3 STMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDV 74 (614)
Q Consensus 3 ~~lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a 74 (614)
+++++.+++++. .|.+.+.. +-+..+|+.+|++..++++ ....|.|. |- .|.|+.-|.++
T Consensus 11 ~~~~~~~~~~g~--~~~l~v~~----~~TV~~LK~~I~~~~gip~-~~qrL~~~---Gk--~L~D~~tL~~~ 70 (85)
T 2kd0_A 11 STIKLTVKFGGK--SIPLSVSP----DCTVKDLKSQLQPITNVLP-RGQKLIFK---GK--VLVETSTLKQS 70 (85)
T ss_dssp CCEEEEEEETTE--EEEEEECT----TSBHHHHHHHHHHHHCCCT-TTCEEEET---TE--ECCTTCBTTTT
T ss_pred CcEEEEEEECCE--EEEEEECC----CCcHHHHHHHHHHHHCcCh-HHEEEEEC---Ce--ECCCcCCHHHC
Confidence 356788888884 44555543 3478899999999999975 57777785 42 35566666664
No 90
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=34.80 E-value=68 Score=26.52 Aligned_cols=56 Identities=18% Similarity=0.248 Sum_probs=32.0
Q ss_pred CCCceeCCCCcEEEEEEEEeccCCCCCCCcEEEEecCCCCCCCCceeeeccCCCCCCCCEEEEEEEEecCCCCceEE
Q 007185 488 LDGTMMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYI 564 (614)
Q Consensus 488 pDGT~V~Pgt~FtKtWrLrN~Gt~~WP~G~~L~fvgGd~m~~~~sv~~~ipv~~v~PGeevdVSV~L~AP~~pG~yi 564 (614)
|+--.|++|+.. +|++.|.|... .+ +...+ +. . .. .+.||++..+++. |.+||.|.
T Consensus 27 P~~i~v~~G~tV--~~~~~n~d~~~--H~--~~~~~---~~----~--~~---~~~pg~~~~~~~t---~~~~G~Y~ 82 (100)
T 4hci_A 27 PNVITIPINEST--TLLLKNKGKSE--HT--FTIKK---LG----I--DV---VVESGKEKNITVK---PKSAGTYE 82 (100)
T ss_dssp SSEEEECTTSCE--EEEEEECSSSC--EE--EEEGG---GT----E--EE---EECTTCEEEEEEC---CCSCEEEE
T ss_pred CCEEEECCCCEE--EEEEEcCCCce--EE--EEEec---CC----c--ce---eecCCcceeEEEe---cccCceEE
Confidence 333467777754 48888987643 11 11111 11 1 11 3678998776653 68999874
No 91
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=34.64 E-value=41 Score=28.08 Aligned_cols=72 Identities=24% Similarity=0.269 Sum_probs=45.5
Q ss_pred eEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceEEE
Q 007185 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRI 84 (614)
Q Consensus 5 lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L~i 84 (614)
+.|+||.-+ =+.|.+.+.. +-+..+|+.+|++.+++++ ....|-|... .|.|+.-|.++=.+.-..|.+
T Consensus 23 m~I~Vk~~~-g~~~~l~v~~----~~TV~~LK~~I~~~~gip~-~~qrLi~~Gk-----~L~D~~tL~~~~i~~g~~i~l 91 (98)
T 4hcn_B 23 MQIFVKTLT-GKTITLEVES----SDTIDNVKSKIQDKEGIPP-DQQRLIFAGK-----QLEDGRTLSDYNIQKESTLHL 91 (98)
T ss_dssp CEEEEEETT-CCEEEEECCT----TCBHHHHHHHHHHHHCCCG-GGCEEEETTE-----ECCTTCBSGGGTCCTTEEEEE
T ss_pred EEEEEEeCC-CCEEEEEECC----CCcHHHHHHHHHHHhCCCh-hHEEEEECCE-----ECCCCCcHHHCCCCCCCEEEE
Confidence 456666422 1345666653 3478899999999999865 4678888532 356766677653344455655
Q ss_pred EEE
Q 007185 85 DVH 87 (614)
Q Consensus 85 ~V~ 87 (614)
.+.
T Consensus 92 ~~r 94 (98)
T 4hcn_B 92 VLR 94 (98)
T ss_dssp ECB
T ss_pred EEe
Confidence 543
No 92
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=34.44 E-value=26 Score=29.93 Aligned_cols=69 Identities=14% Similarity=0.188 Sum_probs=45.1
Q ss_pred EEEee-CCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceEEEE
Q 007185 7 IKVKY-GDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRID 85 (614)
Q Consensus 7 iKvk~-gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L~i~ 85 (614)
|+||. ++ +.|.+.+.. +-+..+|+.+|++.+++++ ....|-|. |- .|.|+.-|.++=.+....|.+.
T Consensus 4 I~Vk~~~g--~~~~l~v~~----~~TV~~LK~~I~~~~gip~-~~QrLi~~---Gk--~L~D~~tL~~~~i~~g~~i~lv 71 (106)
T 3m62_B 4 LTFKNFKK--EKVPLDLEP----SNTILETKTKLAQSISCEE-SQIKLIYS---GK--VLQDSKTVSECGLKDGDQVVFM 71 (106)
T ss_dssp EEEECTTC--CEEEECCCT----TSBHHHHHHHHHHTTTSCG-GGCEEEET---TE--ECCTTSBTTTTTCCTTCEEEEE
T ss_pred EEEEeCCC--CEEEEEECC----CCcHHHHHHHHHHHHCCCh-hhEEEEEC---CE--ECCCcCCHHHcCCCCCCEEEEE
Confidence 45554 33 346777653 3478899999999999864 46688885 43 3677777777533445566655
Q ss_pred EE
Q 007185 86 VH 87 (614)
Q Consensus 86 V~ 87 (614)
+.
T Consensus 72 ~~ 73 (106)
T 3m62_B 72 VS 73 (106)
T ss_dssp CC
T ss_pred Ec
Confidence 54
No 93
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=34.29 E-value=84 Score=26.83 Aligned_cols=73 Identities=25% Similarity=0.303 Sum_probs=46.1
Q ss_pred eeEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceEE
Q 007185 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLR 83 (614)
Q Consensus 4 ~lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L~ 83 (614)
.+.|+|+.-+. +.|.+.+.. +.+..+|+.+|++.+++++ ....|.|. |- .|.|+.-|.++=.+.-..|.
T Consensus 35 ~m~I~Vk~~~g-~~~~l~v~~----~~TV~~LK~~I~~~~gip~-~~qrLi~~---Gk--~L~D~~tL~~~gI~~gs~I~ 103 (111)
T 2ojr_A 35 AMQIFVKTLTG-KTITLEVEP----SDTIENVKAKIQDKEGIPP-DQQRLIFA---GK--QLEDGRTLSDYNIQKESTLH 103 (111)
T ss_dssp CEEEEEECSSS-CEEEEEECT----TCBHHHHHHHHHHHHCCCT-TTEEEEET---TE--ECCSSCBTTTTTCCTTCEEE
T ss_pred eEEEEEEcCCC-CEEEEEeCC----CCCHHHHHHHHHHHHCcCc-ccEEEEEC---CE--ECCCCCcHHHcCCCCCCEEE
Confidence 35667765221 455666642 3588899999999999864 57888885 32 35666666664223445565
Q ss_pred EEEE
Q 007185 84 IDVH 87 (614)
Q Consensus 84 i~V~ 87 (614)
+.+.
T Consensus 104 l~~r 107 (111)
T 2ojr_A 104 LVLR 107 (111)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 5543
No 94
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=33.43 E-value=1.5e+02 Score=31.69 Aligned_cols=44 Identities=20% Similarity=0.380 Sum_probs=37.3
Q ss_pred CCCCCEEEEEEEEecCCCCceEEEEEEEECCCC-CccCCeEEEEEE
Q 007185 542 VPVEGEIDIAVDFTAPELPGRYISYWRMSSPSG-VKFGQRVWVLIQ 586 (614)
Q Consensus 542 v~PGeevdVSV~L~AP~~pG~yiSyWRL~tpdG-~~FG~~LWv~I~ 586 (614)
+..|.+.++.|.|+| .+||+|--+=.|.-.++ -.-|.--|+.|+
T Consensus 84 le~G~~Y~fki~lkA-R~PG~~HVH~~lNV~~~GPiiGPG~~v~I~ 128 (382)
T 1yew_A 84 LEIGKTYDFRVVLKA-RRPGDWHVHTMMNVQGGGPIIGPGKWITVE 128 (382)
T ss_dssp CCTTCEEEEEEEEEE-CSCEEEEEEEEEEESSSCBCCCCEEEEEEE
T ss_pred ecCCCeEeEEEEEec-ccCccccceeeEeecCCCCCcCCceEEEEe
Confidence 678999999999998 89999987777765544 458999999987
No 95
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=32.75 E-value=1.3e+02 Score=24.13 Aligned_cols=72 Identities=19% Similarity=0.279 Sum_probs=45.9
Q ss_pred eeEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceEE
Q 007185 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLR 83 (614)
Q Consensus 4 ~lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L~ 83 (614)
.+.|+||.-+. +.|.+.+.. +-+..+|+.+|++.+++++ +...|-|. |- .|.|+.-|.++=.+ -..|.
T Consensus 5 ~m~i~Vk~~~g-~~~~~~v~~----~~tV~~lK~~i~~~~gip~-~~qrLi~~---Gk--~L~d~~tL~~~~i~-g~~i~ 72 (90)
T 4dwf_A 5 SLEVLVKTLDS-QTRTFIVGA----QMNVKEFKEHIAASVSIPS-EKQRLIYQ---GR--VLQDDKKLQEYNVG-GKVIH 72 (90)
T ss_dssp EEEEEEEETTC-CEEEEEEET----TCBHHHHHHHHHHHHTCCG-GGEEEEET---TE--ECCTTSBGGGGTCT-TEEEE
T ss_pred EEEEEEEcCCC-CEEEEEECC----CCCHHHHHHHHHHHhCCCH-HHEEEEEC---Ce--ECCCCCCHHHcCCC-CcEEE
Confidence 46677777321 445556543 3488899999999999864 46788883 42 35677677774223 45555
Q ss_pred EEEE
Q 007185 84 IDVH 87 (614)
Q Consensus 84 i~V~ 87 (614)
+.+.
T Consensus 73 l~~~ 76 (90)
T 4dwf_A 73 LVER 76 (90)
T ss_dssp EEEC
T ss_pred EEec
Confidence 5443
No 96
>1lyq_A PCOC copper resistance protein; beta barrel, IG domain, metal binding protein; 1.50A {Escherichia coli} SCOP: b.1.18.17 PDB: 1ix2_A
Probab=32.74 E-value=41 Score=29.22 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=24.6
Q ss_pred EEEEEEEEecCCCCceEEEEEEEECCCCCcc
Q 007185 547 EIDIAVDFTAPELPGRYISYWRMSSPSGVKF 577 (614)
Q Consensus 547 evdVSV~L~AP~~pG~yiSyWRL~tpdG~~F 577 (614)
...++|.+. |-.+|.|.-.||....||..-
T Consensus 66 ~~~~~~~l~-~L~~G~YtV~WrvvS~DGH~~ 95 (104)
T 1lyq_A 66 KSMVIIPRE-PLPAGTYRVDWRAVSSDTHPI 95 (104)
T ss_dssp TEEEEEESS-CCCSEEEEEEEEECCTTSCCE
T ss_pred CcEEEEECC-CCCCceEEEEEEEEecCCCcc
Confidence 346677775 788999999999999999763
No 97
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=32.11 E-value=1.9e+02 Score=25.90 Aligned_cols=71 Identities=10% Similarity=0.123 Sum_probs=49.7
Q ss_pred eEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHc-------
Q 007185 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQ------- 77 (614)
Q Consensus 5 lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q------- 77 (614)
+-||++.|. ..+.+.+..+ -+..+|..+|+...+++++ +..|-|- |- .|.|+.=|.++=.+
T Consensus 3 mfl~ir~~k--tti~lev~~s----dTV~~lK~kI~~~egIP~~-qQrLi~~---Gk--~LeD~~TLsdy~I~~~~a~~q 70 (118)
T 2fnj_B 3 VFLMIRRHK--TTIFTDAKES----STVFELKRIVEGILKRPPE-EQRLYKD---DQ--LLDDGKTLGECGFTSQTARPQ 70 (118)
T ss_dssp EEEEEEEBT--EEEEEEEETT----SBHHHHHHHHHHHHCCCGG-GEEEEET---TE--ECCTTSBHHHHTCCTTTSBTT
T ss_pred EEEEEecCC--EEEEEEeCCc----ChHHHHHHHHHHHhCCCHH-HeEEEEC---Ce--ECCCCCCHHHcCcccccccCC
Confidence 568888887 3466666532 3778999999999999765 5555573 42 56777788886433
Q ss_pred cCceEEEEEE
Q 007185 78 RLKFLRIDVH 87 (614)
Q Consensus 78 ~l~~L~i~V~ 87 (614)
....|.+.+.
T Consensus 71 ~~stL~L~lr 80 (118)
T 2fnj_B 71 APATVGLAFR 80 (118)
T ss_dssp BCEEEEEEEB
T ss_pred CCCEEEEEec
Confidence 5677777665
No 98
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=32.03 E-value=83 Score=23.95 Aligned_cols=60 Identities=12% Similarity=0.260 Sum_probs=39.0
Q ss_pred eeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceEEEEE
Q 007185 17 RFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRIDV 86 (614)
Q Consensus 17 Rf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L~i~V 86 (614)
.+.+.++. +-+..+|+.+|++.++++ -....|.|. |- .|.|+.-|.++=.+.-..|.+.+
T Consensus 12 ~~~~~v~~----~~tv~~lK~~i~~~~~i~-~~~q~L~~~---g~--~L~d~~tL~~~~i~~g~~i~l~~ 71 (76)
T 1ndd_A 12 EIEIDIEP----TDKVERIKERVEEKEGIP-PQQQRLIYS---GK--QMNDEKTAADYKILGGSVLHLVL 71 (76)
T ss_dssp EEEEECCT----TCBHHHHHHHHHHHHCCC-GGGEEEEET---TE--ECCTTSBGGGGTCCTTCEEEEEE
T ss_pred EEEEEECC----CChHHHHHHHHHHHHCcC-hHHEEEEEC---CE--ECCCCCcHHHcCCCCCCEEEEEE
Confidence 44566543 347889999999999986 457888895 32 35666666664223345555544
No 99
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=31.15 E-value=1.2e+02 Score=25.48 Aligned_cols=58 Identities=21% Similarity=0.335 Sum_probs=39.7
Q ss_pred eeEEEEeeCCcceee-eeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHH
Q 007185 4 TMVIKVKYGDTLRRF-NARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDV 74 (614)
Q Consensus 4 ~lviKvk~gddlRRf-~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a 74 (614)
.+.|+||+++ +.| .+.+..+ -+..+|+.+|++..+++++ ...|-|. |= .|.|+ .|.++
T Consensus 7 ~m~i~Vk~~g--~~~~~l~v~~~----~TV~~lK~~I~~~tgip~~-~QkLi~~---Gk--~L~D~-tL~~~ 65 (96)
T 1wgg_A 7 GYSVTVKWGK--EKFEGVELNTD----EPPMVFKAQLFALTGVQPA-RQKVMVK---GG--TLKDD-DWGNI 65 (96)
T ss_dssp EEEEEEEETT--EEEEEEEEESS----SCHHHHHHHHHHHTCCCTT-TSCCEET---TE--ECCSS-CCCSC
T ss_pred EEEEEEEECC--EEEEEEEECCC----CcHHHHHHHHHHHHCcCHH-HeEEEEC---Cc--CCCCC-CHHHC
Confidence 4678888876 566 4776532 4778999999999999765 5555574 42 34555 55553
No 100
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.02 E-value=1.2e+02 Score=26.09 Aligned_cols=69 Identities=14% Similarity=0.288 Sum_probs=45.5
Q ss_pred eEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceEEE
Q 007185 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRI 84 (614)
Q Consensus 5 lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L~i 84 (614)
++|++++++. .+.+.+..+ -+..+|+.+|++..+++++..-.+-|+= |- |.|+..|.++=.+.-..|.+
T Consensus 10 ~~~~vk~~Gk--~~~v~v~~~----~TV~~LK~~I~~~tgIpp~~QkLi~~~~--gk---L~D~~tLs~~~I~~gstL~l 78 (100)
T 2dzm_A 10 LDFRVEYRDR--NVDVVLEDT----CTVGEIKQILENELQIPVSKMLLKGWKT--GD---VEDSTVLKSLHLPKNNSLYV 78 (100)
T ss_dssp EEEEEECSSC--EEEEEEETT----SBHHHHHHHHHHHHCCCTTTCCEECCSS--SC---CCTTSBHHHHCCCSEEEEEE
T ss_pred EEEEEEeCCe--EEEEEECCC----CcHHHHHHHHHHHHCCChhHeEEEccCC--CC---CCCcCCHHHcCCCCCCEEEE
Confidence 6789999875 445555432 2778999999999999887555433332 43 46777888863343355544
No 101
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=30.16 E-value=66 Score=27.46 Aligned_cols=75 Identities=17% Similarity=0.200 Sum_probs=47.3
Q ss_pred eeEEEEeeCC--cceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCce
Q 007185 4 TMVIKVKYGD--TLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKF 81 (614)
Q Consensus 4 ~lviKvk~gd--dlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~ 81 (614)
.+.|+|+.-. .=+.+.+.+.. ++-+..+|..+|++.+++++ +...|.|... .|.|+.-|.++=.+....
T Consensus 27 ~i~i~Vk~~~~~~g~~~~l~v~~---l~~TV~~LK~~I~~~~gip~-~~QrL~~~Gk-----~L~D~~tL~~y~I~~g~~ 97 (111)
T 1we6_A 27 PATIRVSKPNENDGQFMEITVQS---LSENVGSLKEKIAGEIQIPA-NKQKLSGKAG-----FLKDNMSLAHYNVGAGEI 97 (111)
T ss_dssp CEEEEECCTTCSSSCCEEEEESC---SSSBHHHHHHHHHHHTTCCT-TTSEEECSSS-----BCCTTSBTTTTTCSSSCE
T ss_pred cEEEEEEecccCCCcEEEEEecC---CCCcHHHHHHHHHHHHCCCH-HHeEEEECCE-----ECCCCCcHHHCCCCCCCE
Confidence 3667777641 22556666642 23588899999999999964 4778888532 345666666653344555
Q ss_pred EEEEEE
Q 007185 82 LRIDVH 87 (614)
Q Consensus 82 L~i~V~ 87 (614)
|.+.+.
T Consensus 98 l~l~~r 103 (111)
T 1we6_A 98 LTLSLR 103 (111)
T ss_dssp EEEECS
T ss_pred EEEEEE
Confidence 655543
No 102
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=30.08 E-value=24 Score=29.41 Aligned_cols=33 Identities=18% Similarity=0.403 Sum_probs=23.6
Q ss_pred ccceecCCCC---Ccchhhhhhhh-CCCCcceEEecC
Q 007185 392 GPRFKSKVKD---DYDLCSICFAA-MGSEADYIRIDR 424 (614)
Q Consensus 392 G~RYKCsvC~---DyDLC~~C~a~-~~~~H~~~ki~~ 424 (614)
.+-|+|..|. ..-||..||.. .|..|.+..+..
T Consensus 15 e~~Y~C~~C~~d~tc~lC~~CF~~~~H~gH~~~~~~s 51 (75)
T 3ny3_A 15 EPTYSCRDCAVDPTCVLCMECFLGSIHRDHRYRMTTS 51 (75)
T ss_dssp CEEEEETTTBSSTTCCBCHHHHHTSGGGGSCEEEEEC
T ss_pred CEEEECccCCCCCCeeEChHHCCCCCcCCceEEEEEc
Confidence 3558888884 35689999987 456788876543
No 103
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A
Probab=29.91 E-value=73 Score=26.06 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=19.2
Q ss_pred CCCCCEEEEEEEEecCCCCceEEEEEEEEC
Q 007185 542 VPVEGEIDIAVDFTAPELPGRYISYWRMSS 571 (614)
Q Consensus 542 v~PGeevdVSV~L~AP~~pG~yiSyWRL~t 571 (614)
+.||++.. ++|++|.++|. ||=.|+
T Consensus 66 i~pG~~~~--~~f~~~~~~G~---y~y~C~ 90 (105)
T 3cvb_A 66 FSPGESYE--ITFSSDFPAGT---YTYYCA 90 (105)
T ss_dssp CSTTCEEE--EEECTTSCSEE---EEEECT
T ss_pred cCCCCeEE--EEEecCCCCee---EEEEeC
Confidence 68999874 57888899996 466665
No 104
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=28.50 E-value=1.1e+02 Score=30.49 Aligned_cols=65 Identities=15% Similarity=0.156 Sum_probs=48.6
Q ss_pred CceeEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHH
Q 007185 2 ESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCD 73 (614)
Q Consensus 2 ~~~lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~ 73 (614)
.+.+.+||.+-|.-..|.+..+ -+-.+|..+|++-++|...+-|.|.|. .+|...-|..+.-|.+
T Consensus 20 ~~~~~~~V~lldg~~~~~v~~~------t~~~el~~~v~~~l~L~e~~~FgL~~~-~~~~~~wL~~~~~i~~ 84 (314)
T 1h4r_A 20 PKTFTVRIVTMDAEMEFNCEMK------WKGKDLFDLVCRTLGLRETWFFGLQYT-IKDTVAWLKMDKKVLD 84 (314)
T ss_dssp -CEEEEEEECSSCEEEEEEETT------CBHHHHHHHHHHHHTCCCGGGEEEEEE-ETTEEEECCTTSBGGG
T ss_pred CCeeEEEEEeCCceEEEEeCCC------CcHHHHHHHHHHHhCCCCCccceEEEE-eCCcCeeCCCccCHHH
Confidence 3567899999887444555432 356789999999999999899999999 7777776766666655
No 105
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=28.48 E-value=1e+02 Score=25.24 Aligned_cols=68 Identities=15% Similarity=0.125 Sum_probs=41.4
Q ss_pred eEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCc-hhHHHHHHccCceEE
Q 007185 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDD-DDLCDVMRQRLKFLR 83 (614)
Q Consensus 5 lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd-~DL~~a~~q~l~~L~ 83 (614)
+.|+||.-+ -+.|.+.+.. +-+..+|+.+|++.. -....|-|... .|.|+ .-|.++=.+....|.
T Consensus 8 m~i~Vk~~~-g~~~~~~v~~----~~TV~~LK~~i~~~~----~~~qrLi~~Gk-----~L~D~~~tL~~y~i~~g~~i~ 73 (95)
T 1wia_A 8 INVRLKFLN-DTEELAVARP----EDTVGTLKSKYFPGQ----ESQMKLIYQGR-----LLQDPARTLSSLNITNNCVIH 73 (95)
T ss_dssp EEEEEEETT-TEEEEEEECS----SSBHHHHHHHHSSST----TTTCEEEETTE-----ECCCSSCBTTTTTCCTTEEEE
T ss_pred EEEEEEeCC-CCEEEEEECC----CCcHHHHHHHHHhhC----cCcEEEEECCE-----EccCCcCCHHHcCCCCCCEEE
Confidence 667776532 2456666653 357889999998876 45777888532 45666 566664334444554
Q ss_pred EEE
Q 007185 84 IDV 86 (614)
Q Consensus 84 i~V 86 (614)
+.+
T Consensus 74 l~~ 76 (95)
T 1wia_A 74 CHR 76 (95)
T ss_dssp EEC
T ss_pred EEE
Confidence 433
No 106
>2kvz_A ISPE; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; NMR {Listeria monocytogenes}
Probab=28.05 E-value=37 Score=28.90 Aligned_cols=24 Identities=21% Similarity=0.509 Sum_probs=17.8
Q ss_pred CCCCCCcceEEEecCCCCEEEecCch
Q 007185 44 NFPHDSDLTLTYVDEDGDIVTLVDDD 69 (614)
Q Consensus 44 ~l~~~~~~~lkY~DeDGD~VTl~Dd~ 69 (614)
-|.....++++|+||+|- .|+++.
T Consensus 2 ~~~k~~~VtV~YvDe~Gn--~La~~~ 25 (85)
T 2kvz_A 2 DFGKPNQVTVNYLDENNT--SIAPSL 25 (85)
T ss_dssp CSSCCCCEEEEEECSSSC--EEEEEE
T ss_pred CcccCCeEEEEEECCCCC--CCCCCe
Confidence 344678899999999996 455544
No 107
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=27.93 E-value=39 Score=26.56 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=19.2
Q ss_pred CcccCceecCCCCCCCcccc---ceecCCCC
Q 007185 374 GMFHKGVRCDGCGVHPITGP---RFKSKVKD 401 (614)
Q Consensus 374 ~vvH~GV~CDgC~~~pI~G~---RYKCsvC~ 401 (614)
..++.-..||.|+ ..|.|. -|+|.+|.
T Consensus 18 ~~~~~pt~C~~C~-~~l~Gl~~qg~~C~~C~ 47 (65)
T 2enz_A 18 YNYKSPTFCEHCG-TLLWGLARQGLKCDACG 47 (65)
T ss_dssp CCCCSCCBCSSSC-CBCCCSSSCSEEESSSC
T ss_pred EcCCCCcCchhcC-hhheecCCcccccCCCC
Confidence 3455668899998 678874 47777763
No 108
>2rb6_A Uncharacterized protein; NESG, Q8EI81_sheon, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.50A {Shewanella oneidensis} SCOP: b.38.1.6
Probab=27.61 E-value=87 Score=25.37 Aligned_cols=46 Identities=30% Similarity=0.521 Sum_probs=33.0
Q ss_pred CCceeEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCch
Q 007185 1 MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDD 69 (614)
Q Consensus 1 m~~~lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~ 69 (614)
|++.++|..+-|..| .. .|...+| .+.. .+.|+|++|..+.|-.|+
T Consensus 1 ~SS~yvitT~DG~~I---vT----~GKP~~D---------------~dTG-m~sY~D~~G~~~qIn~dd 46 (61)
T 2rb6_A 1 MSSQYIMSTKDGKMI---TS----DSKPKLD---------------KTTG-MYLYYDEDGREVMIKQED 46 (61)
T ss_dssp -CCEEEEEETTSCEE---EE----SSCCEEE---------------TTTT-EEEEECTTSCEEEEEGGG
T ss_pred CCCcEEEEeCCCcEE---Ec----CCCcccc---------------CCCC-CEEEEcCCCCEEEEcHHH
Confidence 788899999988755 22 2456666 2444 479999999999997654
No 109
>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17
Probab=27.54 E-value=58 Score=29.19 Aligned_cols=57 Identities=23% Similarity=0.352 Sum_probs=38.0
Q ss_pred cHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecC-chhHHHHHHccCceEEEEEEecCC
Q 007185 31 DIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVD-DDDLCDVMRQRLKFLRIDVHLNND 91 (614)
Q Consensus 31 ~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~D-d~DL~~a~~q~l~~L~i~V~l~~~ 91 (614)
++.=|++.+.|-| ++..|.++|.|=.++--.|.| +.++...|.+.-.+--| |.+|..
T Consensus 31 TyEWLqAal~RKy---p~~~f~~~YIDI~~~~~~l~d~~~~~ae~I~ede~FYPl-V~inde 88 (111)
T 1xg8_A 31 IYDWLQPLLKRKY---PNISFKYTYIDITKDNDNLTDHDLQFIERIEQDELFYPL-ITMNDE 88 (111)
T ss_dssp HHHHHHHHHHHHC---TTSCEEEEEEETTTC---CCHHHHHHHHHHHTTSSCSSE-EEETTE
T ss_pred HHHHHHHHHhCcC---CCCceEEEEEeccCCccchhHHHHHHHHHHhhccccceE-EEECCE
Confidence 4456999999998 488999999999998666666 55666666444344333 444554
No 110
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=27.27 E-value=1.5e+02 Score=25.02 Aligned_cols=70 Identities=7% Similarity=0.131 Sum_probs=44.6
Q ss_pred eEEEEee-CCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceEE
Q 007185 5 MVIKVKY-GDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLR 83 (614)
Q Consensus 5 lviKvk~-gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L~ 83 (614)
+.|+||. ++ +.|.+.+.. +-+..+|+.+|++..+++ -....|.|. |- .|.|+.-|.++=.+....|.
T Consensus 24 m~I~Vk~~~g--~~~~l~v~~----~~TV~~LK~~I~~~~gip-~~~qrLi~~---Gk--~L~D~~tL~~ygI~~g~ti~ 91 (106)
T 1ttn_A 24 CQLRLRLSTG--KDLKLVVRS----TDTVFHMKRRLHAAEGVE-PGSQRWFFS---GR--PLTDKMKFEELKIPKDYVVQ 91 (106)
T ss_dssp EEEEEEETTT--EEEEEEECT----TSHHHHHHHHHHHTTCCC-STTCEEEET---TE--ECCTTSHHHHCCCSSSCEEE
T ss_pred EEEEEEcCCC--CEEEEEeCC----CCcHHHHHHHHHHHHCcC-cccEEEEEC---CE--ECCCCCcHHHcCCCCCCEEE
Confidence 4566664 22 456666653 347889999999999986 457788884 42 35666667665334445555
Q ss_pred EEE
Q 007185 84 IDV 86 (614)
Q Consensus 84 i~V 86 (614)
+.+
T Consensus 92 lv~ 94 (106)
T 1ttn_A 92 VIV 94 (106)
T ss_dssp EEC
T ss_pred EEE
Confidence 433
No 111
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=27.15 E-value=1.2e+02 Score=26.42 Aligned_cols=67 Identities=13% Similarity=0.112 Sum_probs=44.4
Q ss_pred eEEEEe--eCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceE
Q 007185 5 MVIKVK--YGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFL 82 (614)
Q Consensus 5 lviKvk--~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L 82 (614)
+.|+|| -| ++|.+.+..+ -+..+|..+|+..++++ -+...|.|- | -.|.|+.-|.++=.+....|
T Consensus 29 m~I~VKtl~G---k~i~lev~p~----dTV~~lK~~Ia~k~Gip-~~qQrLi~~---G--k~L~D~~TL~dygI~~gstl 95 (100)
T 1uh6_A 29 IEVVCNDRLG---KKVRVKCNTD----DTIGDLKKLIAAQTGTR-WNKIVLKKW---Y--TIFKDHVSLGDYEIHDGMNL 95 (100)
T ss_dssp EEEEEECSSS---SCEEEEEETT----SBHHHHHHHHHHHHCCC-GGGCEEEET---T--EECCSSCBHHHHTCCTTEEE
T ss_pred EEEEEECCCC---CEEEEEeCCC----CcHHHHHHHHHHHhCCC-HHHEEEEEC---C--EECCCCCCHHHcCCCCCCEE
Confidence 445555 45 4556666532 37789999999999996 557778887 4 25577777777644555555
Q ss_pred EE
Q 007185 83 RI 84 (614)
Q Consensus 83 ~i 84 (614)
.+
T Consensus 96 hL 97 (100)
T 1uh6_A 96 EL 97 (100)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 112
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A
Probab=27.04 E-value=2.9e+02 Score=24.54 Aligned_cols=26 Identities=12% Similarity=0.078 Sum_probs=17.6
Q ss_pred CCCCCCEEEEEEEEecC--CCCceEEEEEEEEC
Q 007185 541 GVPVEGEIDIAVDFTAP--ELPGRYISYWRMSS 571 (614)
Q Consensus 541 ~v~PGeevdVSV~L~AP--~~pG~yiSyWRL~t 571 (614)
-|.|||+..|+ |.+| .++|.| |=.|+
T Consensus 86 ~l~pGet~svt--f~~~~~~~~G~Y---~f~C~ 113 (129)
T 1cuo_A 86 IIGGGEKTSVK--FKVSALSKDEAY---TYFCS 113 (129)
T ss_dssp CBCTTCEEEEE--EEGGGCCTTSCE---EEECC
T ss_pred EECCCCEEEEE--EeccccCCCceE---EEEeC
Confidence 36899987655 5556 589966 44555
No 113
>1mby_A SAK, serine/threonine kinase; POLO domain, strand exchange, transferase; 2.00A {Mus musculus} SCOP: d.223.1.1
Probab=27.00 E-value=18 Score=31.37 Aligned_cols=39 Identities=23% Similarity=0.525 Sum_probs=30.6
Q ss_pred eEEEecCCCCEEEecCchhHHHHHHccCceEE-EEEEecC
Q 007185 52 TLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLR-IDVHLNN 90 (614)
Q Consensus 52 ~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L~-i~V~l~~ 90 (614)
.|+|++.+|-...-.+++||-+++++||..|. |...|.+
T Consensus 43 ~ItYt~~~G~~t~y~~~d~LP~~vrekL~~lp~I~~~L~~ 82 (88)
T 1mby_A 43 SISYTSPDGQTTRYGENEKLPEYIKQKLQLLSSILLMFSN 82 (88)
T ss_dssp EEEEECTTSCEEEEETTSCCCHHHHHHHTTTCCEEEEECC
T ss_pred eeEEeCCCCceEEcCcCCCccHHHHHHHhhhHHHHHHHhc
Confidence 78999999988777888899999988887763 4444444
No 114
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=26.94 E-value=1.4e+02 Score=29.78 Aligned_cols=67 Identities=13% Similarity=0.042 Sum_probs=51.8
Q ss_pred ceeEEEEeeCC-cceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHH
Q 007185 3 STMVIKVKYGD-TLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVM 75 (614)
Q Consensus 3 ~~lviKvk~gd-dlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~ 75 (614)
+.+.+||.+=| ....|.+... -+-.+|..+|++-++|...+-|.|.|.|.+|...-|..+.-+.+.+
T Consensus 16 ~~~~~~V~lldgt~~~~~vd~~------tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~ 83 (296)
T 3qij_A 16 FQGHCKVSLLDDTVYECVVEKH------AKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQV 83 (296)
T ss_dssp -CCEEEEECTTSCEEEEECCTT------CBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC
T ss_pred ceEEEEEEccCCCEEEEEECCC------CCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhc
Confidence 34778999865 4555555532 3566899999999999988889999999988888888887777755
No 115
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=26.92 E-value=29 Score=29.51 Aligned_cols=36 Identities=11% Similarity=0.269 Sum_probs=25.6
Q ss_pred CcccCceecCCCCCCCcccc-----ceecCCCCCcchhhhhhh
Q 007185 374 GMFHKGVRCDGCGVHPITGP-----RFKSKVKDDYDLCSICFA 411 (614)
Q Consensus 374 ~vvH~GV~CDgC~~~pI~G~-----RYKCsvC~DyDLC~~C~a 411 (614)
..+|.-..||.|+ ..|.|. -|+|.+|. |..=..|..
T Consensus 30 ~~~~~PT~Cd~C~-~~lWGl~kqp~G~~C~~C~-~~~HkrC~~ 70 (84)
T 2row_A 30 TLYHFPTNCEACM-KPLWHMFKPPPALECRRCH-IKCHKDHMD 70 (84)
T ss_dssp ECCSSCEECSSSS-SEECCSSSCCCEEEESSSC-CEEEHHHHH
T ss_pred EcCCCCcchhhcC-HhhhccccCCCCCEecCCC-CccchhHhC
Confidence 4577889999998 678875 68899883 433333554
No 116
>2jn0_A Hypothetical lipoprotein YGDR; solution structure, PSI-2 target, structural genomics, protein structure initiative; NMR {Escherichia coli} SCOP: b.38.1.6 PDB: 3fif_A
Probab=26.86 E-value=70 Score=25.91 Aligned_cols=46 Identities=28% Similarity=0.519 Sum_probs=31.2
Q ss_pred CCceeEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCch
Q 007185 1 MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDD 69 (614)
Q Consensus 1 m~~~lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~ 69 (614)
|++..+|..+-|..| . . .|...+| .+.. .+.|+|++|..+.|-.|+
T Consensus 1 ~Ss~yvitT~DG~~I---v---T-~GKP~~D---------------~dTG-m~sY~D~~G~~~qIn~dd 46 (61)
T 2jn0_A 1 MSSDYVMATKDGRMI---L---T-DGKPEID---------------DDTG-LVSYHDQQGNAMQINRDD 46 (61)
T ss_dssp ---CCEEEETTSCEE---E---B-CCCCEEE---------------TTTT-EEEEEBTTSCEEEEEGGG
T ss_pred CCCcEEEEeCCCcEE---E---c-CCCcccc---------------CCCC-CEEEEcCCCCEEEEcHHH
Confidence 788889999888755 1 1 3456666 2444 479999999999997664
No 117
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=25.77 E-value=2.6e+02 Score=24.31 Aligned_cols=20 Identities=10% Similarity=0.195 Sum_probs=14.7
Q ss_pred CCCCCCEEEEEEEEecCCCCceE
Q 007185 541 GVPVEGEIDIAVDFTAPELPGRY 563 (614)
Q Consensus 541 ~v~PGeevdVSV~L~AP~~pG~y 563 (614)
.|.|||+.+|++.+ .+||.|
T Consensus 100 ~l~pGet~~v~f~~---~~pG~y 119 (139)
T 2aan_A 100 LANGNETVEVTFTA---PAAGTY 119 (139)
T ss_dssp CBCTTCEEEEEEEC---CSSEEE
T ss_pred ccCCCCEEEEEEEC---CCCeEE
Confidence 37899998776553 489976
No 118
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=25.44 E-value=69 Score=26.11 Aligned_cols=65 Identities=12% Similarity=0.261 Sum_probs=43.6
Q ss_pred eeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceEEEEEEecC
Q 007185 16 RRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRIDVHLNN 90 (614)
Q Consensus 16 RRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L~i~V~l~~ 90 (614)
+.|.+.+.. +-+..+|+.+|++.+++++ +...|-|. | -.|.|+..|.++=.+.-..|.+.+.+.+
T Consensus 11 ~~~~l~v~~----~~TV~~LK~~I~~~~gip~-~~qrLi~~---G--k~L~D~~tL~~~~i~~g~~l~l~~rl~G 75 (88)
T 4fbj_B 11 KEIEIDIEP----TDKVERIKERVEEKEGIPP-QQQRLIYS---G--KQMNDEKTAADYKILGGSVLHLVLALRG 75 (88)
T ss_dssp CEEEEECCT----TCBHHHHHHHHHHHHCCCG-GGCEEEET---T--EECCTTSBTTTTTCCTTCEEEEECBCC-
T ss_pred CEEEEEECC----CCCHHHHHHHHHHHHCcCh-hHEEEEEC---C--eECCCCCcHHHcCCCCCCEEEEEEECCC
Confidence 345666643 3478899999999999865 46788884 3 2456777777753355566776665544
No 119
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=25.27 E-value=1.2e+02 Score=27.10 Aligned_cols=25 Identities=12% Similarity=0.214 Sum_probs=16.2
Q ss_pred CCCCCCEEEEEEEEecC-CCCce-EEEEEE
Q 007185 541 GVPVEGEIDIAVDFTAP-ELPGR-YISYWR 568 (614)
Q Consensus 541 ~v~PGeevdVSV~L~AP-~~pG~-yiSyWR 568 (614)
-|.|||+..|+.. +| -++|. | .||+
T Consensus 85 ~l~pGes~~vtf~--~~~l~~G~~Y-~f~C 111 (128)
T 2iaa_C 85 VIGGGETDSVTFD--VSKLKEGEDY-AFFC 111 (128)
T ss_dssp CBCTTCEEEEEEE--SSCCCTTCCE-EEEC
T ss_pred eeCCCCEEEEEEe--ccccCCCceE-EEEE
Confidence 3789998876654 45 36784 7 4554
No 120
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=25.12 E-value=32 Score=37.73 Aligned_cols=38 Identities=13% Similarity=0.350 Sum_probs=29.2
Q ss_pred CcccCceecCCCCCCCccc---cceecCCCCCcchhhhhhhhC
Q 007185 374 GMFHKGVRCDGCGVHPITG---PRFKSKVKDDYDLCSICFAAM 413 (614)
Q Consensus 374 ~vvH~GV~CDgC~~~pI~G---~RYKCsvC~DyDLC~~C~a~~ 413 (614)
..++.-..|+.|+ ..+.| -+|+|..|. +..|..|....
T Consensus 524 ~~~~~~t~C~~C~-~~l~gl~~qg~~C~~C~-~~vHk~C~~~v 564 (587)
T 3ky9_A 524 FSFEETTSCKACQ-MLLRGTFYQGYRCHRCR-ASAHKECLGRV 564 (587)
T ss_dssp ECCSSCCBCTTTC-SBCCSSSCCEEEETTTC-CEECSGGGGGS
T ss_pred EeCCCCccccccc-ccccccccCCcCCCCCC-CccchhhhhcC
Confidence 3445668999998 45555 579999995 88999998763
No 121
>2k57_A Putative lipoprotein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pseudomonas syringae PV} SCOP: b.38.1.6
Probab=25.08 E-value=1.3e+02 Score=24.32 Aligned_cols=46 Identities=24% Similarity=0.363 Sum_probs=33.5
Q ss_pred CCceeEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCch
Q 007185 1 MESTMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDD 69 (614)
Q Consensus 1 m~~~lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~ 69 (614)
|++..+|..+-|..+ .. .|...+| .+.. .+.|+|++|..+.|-.|+
T Consensus 1 ~SS~yvitt~DG~~I---vT----~gKP~~D---------------~dTG-mysY~D~~G~~~qIn~dd 46 (61)
T 2k57_A 1 MASPTVITLNDGREI---QA----VDTPKYD---------------EESG-FYEFKQLDGKQTRINKDQ 46 (61)
T ss_dssp CCCCEEEEESSSCEE---EE----SSCCEEC---------------TTTC-EEEEEBTTSCEEEEETTT
T ss_pred CCCceEEEeCCCcEE---Ec----CCCcccc---------------CCCC-CEEEEcCCCCEEEEcHHH
Confidence 778889998888755 22 2456666 2444 479999999999997764
No 122
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=24.95 E-value=40 Score=27.69 Aligned_cols=35 Identities=20% Similarity=0.337 Sum_probs=24.6
Q ss_pred ceecCCCCCCCccccceecCCCCCcchhhhhhhh-CC
Q 007185 379 GVRCDGCGVHPITGPRFKSKVKDDYDLCSICFAA-MG 414 (614)
Q Consensus 379 GV~CDgC~~~pI~G~RYKCsvC~DyDLC~~C~a~-~~ 414 (614)
.+.||.|...+-.-.-=.|..|..+ ||+.|... |.
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s-~C~~hl~~~H~ 65 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVS-YCDECLKATHP 65 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEE-ECHHHHHHHSC
T ss_pred CccCCcCCCCCCCCCeeEccCccch-hhhhhhHhhcC
Confidence 4789999743323344569999755 99999985 53
No 123
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=24.46 E-value=2.9e+02 Score=23.93 Aligned_cols=65 Identities=14% Similarity=0.087 Sum_probs=45.6
Q ss_pred eeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceEEEEEEecCC
Q 007185 16 RRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRIDVHLNND 91 (614)
Q Consensus 16 RRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L~i~V~l~~~ 91 (614)
++|.+.+.. +-+..+|..+|+.-+.++++ ..-|-|. |= .|.|+.-|.++=.+.-.+| +.+.+..+
T Consensus 30 ~~~~lev~~----~~TV~~lK~kI~~k~gip~~-qQrLI~~---GK--iL~D~~TL~~y~I~~gsti-~vl~lrg~ 94 (100)
T 1wju_A 30 RKNLLETRL----HITGRELRSKIAETFGLQEN-YIKIVIN---KK--QLQLGKTLEEQGVAHNVKA-MVLELKQS 94 (100)
T ss_dssp SSEEEEEES----SSBHHHHHHHHHHHTTCCST-TCEEEET---TE--ECCTTSBHHHHTCCSSEEE-EEECCCCC
T ss_pred cEEEEEeCC----cCHHHHHHHHHHHHHCcCHH-HeEEEeC---Ce--ECCCCCcHHHcCCCCCCEE-EEEEECCC
Confidence 788888753 45788999999999999765 5555587 43 4567777888755556667 55555443
No 124
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=24.45 E-value=1.3e+02 Score=24.65 Aligned_cols=61 Identities=23% Similarity=0.330 Sum_probs=40.4
Q ss_pred eeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceEEEEEE
Q 007185 17 RFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRIDVH 87 (614)
Q Consensus 17 Rf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L~i~V~ 87 (614)
.+.+.++. +-+..+|+.+|++.+++++ ....|.|. |- .|.|+.-|.++=.+....|.+.+.
T Consensus 12 ~~~~~v~~----~~TV~~LK~~I~~~~gi~~-~~qrL~~~---Gk--~L~D~~tL~~~gi~~g~~i~l~~~ 72 (98)
T 1yx5_B 12 TITLEVEP----SDTIENVKAKIQDKEGIPP-DQQRLIFA---GK--QLEDGRTLSDYNIQKESTLHLVLR 72 (98)
T ss_dssp EEEEECCT----TCBHHHHHHHHHHHTCCCG-GGEEEEET---TE--ECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEECC----CCcHHHHHHHHHHHHCcCh-hhEEEEEC---CE--ECCCCCCHHHcCCCCCCEEEEEEe
Confidence 45666643 3578899999999999864 58888894 42 356666666653344455655553
No 125
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Probab=24.44 E-value=64 Score=32.96 Aligned_cols=38 Identities=32% Similarity=0.607 Sum_probs=31.9
Q ss_pred cHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhH
Q 007185 31 DIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDL 71 (614)
Q Consensus 31 ~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL 71 (614)
.+.+|..-+.+.|+ +.++.|.+.|..||+|+|.+..|-
T Consensus 268 ~~~a~yd~~~~~~~---~~e~eL~~~~~~GD~I~v~~~~d~ 305 (341)
T 2dyb_A 268 LLKDLLELTRREFQ---REDIALNYRDAEGDLVRLLSDEDV 305 (341)
T ss_dssp CHHHHHHHHHHHHT---CSCEEEEEECSSSCEEECCSHHHH
T ss_pred chhhhhhhhhhhcC---CCcccccCCCCCCCEEEEeeecCC
Confidence 34578888888886 569999999999999999988773
No 126
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*
Probab=24.04 E-value=2.1e+02 Score=32.89 Aligned_cols=71 Identities=14% Similarity=0.125 Sum_probs=51.2
Q ss_pred CCCCcEEEEEEEEeccCCCCCCCcEEEEecCCCCCCCCceeeeccCCCCCCCCEEEEEEEEecCCCCceEEEEEEEE
Q 007185 494 APSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMS 570 (614)
Q Consensus 494 ~Pgt~FtKtWrLrN~Gt~~WP~G~~L~fvgGd~m~~~~sv~~~ipv~~v~PGeevdVSV~L~AP~~pG~yiSyWRL~ 570 (614)
.-|+.++-.=.+.|.=.++- .+|.|..-|-. +... +..+.+..|.||+++.+.+.|+ |.++|.-+-.=.|.
T Consensus 605 ~v~~~l~v~v~f~NPL~~~L-~~c~~~vEG~G-L~~~---~~~~~~~~v~pg~~~~~~~~~~-P~~~G~r~L~a~f~ 675 (692)
T 1vjj_A 605 RVRKPVNVQMLFSNPLDEPV-RDCVLMVEGSG-LLLG---NLKIDVPTLGPKERSRVRFDIL-PSRSGTKQLLADFS 675 (692)
T ss_dssp BTTSCEEEEEEEECCSSSCB-CSEEEEEECTT-TSSS---CEEEEECCBCTTCEEEEEEEEC-CCSCEEEEEEEEEE
T ss_pred ccCCeEEEEEEEECCCCCcc-cceEEEEECCC-CCCC---ceEEEcCccCCCCEEEEEEEEE-eccccceEEEEEEE
Confidence 34889999999999877776 68888655433 3211 2344456799999999999995 99999765443443
No 127
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=23.97 E-value=2.3e+02 Score=23.42 Aligned_cols=72 Identities=13% Similarity=0.216 Sum_probs=47.7
Q ss_pred eEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceEEE
Q 007185 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRI 84 (614)
Q Consensus 5 lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L~i 84 (614)
+.|+|+.-+ =+.|.+.+.. +-++..|..+|+....++++ ...|.| +|. .|.|+.-|.++=.+....|.+
T Consensus 22 m~I~Vk~~~-g~~~~l~v~~----~~tv~~lK~~i~~~~gip~~-~qrLif---~Gk--~L~d~~tl~dy~i~~g~~I~l 90 (97)
T 1wyw_B 22 IKLKVIGQD-SSEIHFKVKM----TTHLKKLKESYCQRQGVPMN-SLRFLF---EGQ--RIADNHTPKELGMEEEDVIEV 90 (97)
T ss_dssp EEEEEECTT-CCEEEEEEET----TSCTHHHHHHHHHHHTCCGG-GEEEEE---TTE--ECCTTCCHHHHTCCTTCEEEE
T ss_pred EEEEEEeCC-CCEEEEEECC----CCcHHHHHHHHHHHHCCChh-hEEEEE---CCe--EcCCCCCHHHCCCCCCCEEEE
Confidence 567777422 1345555543 24678899999999999654 888888 465 456777777764455566766
Q ss_pred EEE
Q 007185 85 DVH 87 (614)
Q Consensus 85 ~V~ 87 (614)
.+.
T Consensus 91 ~~~ 93 (97)
T 1wyw_B 91 YQE 93 (97)
T ss_dssp EES
T ss_pred EEe
Confidence 553
No 128
>3t9w_A Small laccase, multi-copper oxidase; two-domain copper oxidase, Cu-binding, oxidoreducta; 1.50A {Amycolatopsis SP}
Probab=23.73 E-value=96 Score=31.09 Aligned_cols=91 Identities=10% Similarity=0.037 Sum_probs=48.0
Q ss_pred eCCCCcEEEEEEEEeccCCCCCCCcEEEEecCCCCCCCC----ce----eeeccCCCCCCCCEEEEEEEEecCCCCceEE
Q 007185 493 MAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGV----SV----EIEVPADGVPVEGEIDIAVDFTAPELPGRYI 564 (614)
Q Consensus 493 V~Pgt~FtKtWrLrN~Gt~~WP~G~~L~fvgGd~m~~~~----sv----~~~ipv~~v~PGeevdVSV~L~AP~~pG~yi 564 (614)
+..|++ -.|+|.|.|....| ..+.|..|.... .. .-..-+-.|.|||..++.|.-..+..||.|.
T Consensus 194 v~~Ge~--Vr~~liN~~~~~Hp-----fHlHGh~F~v~~~g~~~~~~~~~~~~Dtv~v~PGe~~~~~via~~~dnPG~w~ 266 (299)
T 3t9w_A 194 ANLGER--VEWIAIGHGSNFHT-----FHLHGHRWLDNRTGMRTSEYDPSPLIDIKDLNPGVSFGFQVIAGEGVGPGMWM 266 (299)
T ss_dssp EETTCE--EEEEEEEESSCCCE-----EEETTCCEESSSSSSCCSTTCCCCEESEEECCTTCEEEEEEETTTTTCSEEEE
T ss_pred ecCCCE--EEEEEEecccccee-----eeEecceEEEEecccccCCcCCCCceeeEEeCCceeEEEEEEEeeCCCCeeEE
Confidence 344554 35999999975543 344454442100 00 0001111478999998877544567899754
Q ss_pred EEEEEECCCCCccCCeEEEEEEEecCCcch
Q 007185 565 SYWRMSSPSGVKFGQRVWVLIQVLRALESI 594 (614)
Q Consensus 565 SyWRL~tpdG~~FG~~LWv~I~V~~~~~~i 594 (614)
+-+--...+-.-++..+.|.+..+.+
T Consensus 267 ----~HCHi~~H~~~GM~~~f~V~~~~~~~ 292 (299)
T 3t9w_A 267 ----YHCHVQNHSDMGMAGMFLVRNADGTM 292 (299)
T ss_dssp ----EEECSHHHHHTTCEEEEEEECTTSCC
T ss_pred ----EEcCCHHHHhcCCeEEEEEECCCCCC
Confidence 32211112223356677787765544
No 129
>3tas_A Small laccase, multi-copper oxidase; two-domain laccase, oxidoreductase, secreted; HET: PG4; 2.30A {Streptomyces viridosporus} PDB: 3tbb_A 3tbc_A*
Probab=23.72 E-value=56 Score=32.94 Aligned_cols=91 Identities=10% Similarity=0.034 Sum_probs=49.5
Q ss_pred eCCCCcEEEEEEEEeccCCCCCCCcEEEEecCCCCCCCC--------ceeeeccCCCCCCCCEEEEEEEEecCCCCceEE
Q 007185 493 MAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGV--------SVEIEVPADGVPVEGEIDIAVDFTAPELPGRYI 564 (614)
Q Consensus 493 V~Pgt~FtKtWrLrN~Gt~~WP~G~~L~fvgGd~m~~~~--------sv~~~ipv~~v~PGeevdVSV~L~AP~~pG~yi 564 (614)
+..|++ -.|+|.|.|+.. .-..+.|..|.... ..+...-.-.|.|||.++|.|....+..||.|.
T Consensus 178 v~~Ge~--vr~~liN~g~~~-----hpfHlHGh~F~v~~~~~~~~~~~~~~~~Dtv~l~Pger~~v~v~a~~~~nPG~w~ 250 (313)
T 3tas_A 178 ATVGDR--VEFVMITHGEYY-----HTFHLHGHRWADNRTGMLTGPDDPSQVIDNKICGPADSFGFQVIAGEGVGAGAWM 250 (313)
T ss_dssp EETTCE--EEEEEEEESSCC-----EEEEETTCCEESSTTSSCCSTTCCCCEESEEEECTTCEEEEEEETTTTTCSEEEE
T ss_pred cccCCE--EEEEEecccccc-----eeeeecCCeeEEEEECCccCCCCCCeeeeEEEeCCCcceEEEEEeccCCCCEeEE
Confidence 344443 479999998642 22345555442110 000000011368999999988766778899754
Q ss_pred EEEEEECCCCCccCCeEEEEEEEecCCcch
Q 007185 565 SYWRMSSPSGVKFGQRVWVLIQVLRALESI 594 (614)
Q Consensus 565 SyWRL~tpdG~~FG~~LWv~I~V~~~~~~i 594 (614)
=+-.+ ...+-.-.+-.+.|++++..+
T Consensus 251 ~HCHi----~~H~~~GM~~~f~V~~~d~~~ 276 (313)
T 3tas_A 251 YHCHV----QSHSDMGMVGLFLVKKPDGTI 276 (313)
T ss_dssp EEECS----HHHHHTTCEEEEEEECTTCCC
T ss_pred EEeCC----hHHHHCCCeEEEEEECCCCCC
Confidence 32221 112223456777788766554
No 130
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=23.66 E-value=1.2e+02 Score=27.24 Aligned_cols=61 Identities=13% Similarity=0.138 Sum_probs=38.3
Q ss_pred eeCCCCcEEEEEEEEeccCCCCCCCcEEEEecCCCCCCCCceeeec-cC-CCCCCCCEEEEEEEEec
Q 007185 492 MMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEV-PA-DGVPVEGEIDIAVDFTA 556 (614)
Q Consensus 492 ~V~Pgt~FtKtWrLrN~Gt~~WP~G~~L~fvgGd~m~~~~sv~~~i-pv-~~v~PGeevdVSV~L~A 556 (614)
.|.-++.-+++-+|.|+|... +...|.--..-.......+.+ |. .-++||+++.|.|++..
T Consensus 38 ~v~~~~~~~~~l~I~Ntg~vp----a~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~v 100 (140)
T 3qbt_B 38 NVKFRQLQKEKFQISNNGQVP----CHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYV 100 (140)
T ss_dssp EECBTCCEEEEEEEEECSSSC----EEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECB
T ss_pred eceeeeeeeeEEEEEcCCccc----eEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEEEEEE
Confidence 467788889999999999974 566666311000001001111 21 24799999999999875
No 131
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=23.60 E-value=3.4e+02 Score=29.98 Aligned_cols=95 Identities=15% Similarity=0.150 Sum_probs=54.2
Q ss_pred eeeeecCCCce-eCCCCcEEEEE--EEEeccCCCCCCCcEEEEecCCCCCCCCceeeec-cC--CCCCCCCEEEEEEEEe
Q 007185 482 ILDVNVLDGTM-MAPSTPFTKIW--RMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEV-PA--DGVPVEGEIDIAVDFT 555 (614)
Q Consensus 482 V~DVTipDGT~-V~Pgt~FtKtW--rLrN~Gt~~WP~G~~L~fvgGd~m~~~~sv~~~i-pv--~~v~PGeevdVSV~L~ 555 (614)
..|+|+|--++ +.++..++++| +|.|.|.. ..+|-.-+.... .+.+.+ |- .--+.||+..|+|+|+
T Consensus 519 ~~~lN~pS~~v~~~~~~~~~~t~~rtvtnvg~~---~~ty~~~v~~p~-----gv~v~V~P~~l~f~~~~~~~~~~vt~~ 590 (621)
T 3vta_A 519 VWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQ---ASTYRAMISAPQ-----GLTISVNPNVLSFNGLGDRKSFTLTVR 590 (621)
T ss_dssp GGGSCCSSEEEECCSSCCEEEEEEEEEEECSSS---CEEEEEEEECCS-----SEEEEEESSEEEECSTTCEEEEEEEEE
T ss_pred ccccccccEEEEccCCCceEEEEEEEEEccCCC---CeEEEEEEECCC-----CcEEEEecCEEEEcCCCcEEEEEEEEE
Confidence 45777777654 45777777765 68999875 356666554321 111111 10 0015699999999998
Q ss_pred cCCCCceEEEEEEEECCCCCccCCeEEEEEEEec
Q 007185 556 APELPGRYISYWRMSSPSGVKFGQRVWVLIQVLR 589 (614)
Q Consensus 556 AP~~pG~yiSyWRL~tpdG~~FG~~LWv~I~V~~ 589 (614)
+...-+.+..+..+. +|. |.+..-|.|..
T Consensus 591 ~~~~~~~~~g~l~w~--d~~---h~Vr~Pi~v~~ 619 (621)
T 3vta_A 591 GSIKGFVVSASLVWS--DGV---HYVRSPITITS 619 (621)
T ss_dssp ECCCSSEEEEEEEEE--CSS---CCCEEEEEEEC
T ss_pred ecCCCceEEEEEEEE--cCC---EEEEeCEEEEE
Confidence 754433333444443 352 56666666653
No 132
>1nep_A EPV20, BNPC2, epididymal secretory protein E1; niemann-PICK C2, LDL, cholesterol, lipid bindin; HET: NAG; 1.70A {Bos taurus} SCOP: b.1.18.7 PDB: 2hka_A*
Probab=23.28 E-value=1.4e+02 Score=26.31 Aligned_cols=35 Identities=3% Similarity=0.109 Sum_probs=28.0
Q ss_pred CCCCCCEEEEEEEEecC--CCCceEEEEEEEECCCCC
Q 007185 541 GVPVEGEIDIAVDFTAP--ELPGRYISYWRMSSPSGV 575 (614)
Q Consensus 541 ~v~PGeevdVSV~L~AP--~~pG~yiSyWRL~tpdG~ 575 (614)
++.+||++..+..|-.+ --.+.|.-.|.|.+.+|.
T Consensus 81 Pl~~G~~~~y~~~lpV~~~~P~~~~~v~~~L~d~~~~ 117 (130)
T 1nep_A 81 PIEKDKTYNYVNKLPVKNEYPSIKVVVEWELTDDKNQ 117 (130)
T ss_dssp SBCTTCEEEEEEEEECCTTSCSSEEEEEEEEECTTSC
T ss_pred cccCCcEEEEEEEeEecccCCCccEEEEEEEEcCCCC
Confidence 36889999999888744 335799999999987764
No 133
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=22.91 E-value=1.6e+02 Score=25.10 Aligned_cols=73 Identities=23% Similarity=0.262 Sum_probs=46.8
Q ss_pred eeEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceEE
Q 007185 4 TMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLR 83 (614)
Q Consensus 4 ~lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L~ 83 (614)
.+.|+||.-+ =+.|.+.+.. +-+..+|+.+|++.+++++ ....|-|... .|.|+.-|.++=.+.-..|.
T Consensus 35 ~m~I~Vk~~~-G~~~~l~v~~----~~TV~~LK~~I~~~~gip~-~~QrLi~~Gk-----~L~D~~tL~~~gI~~gs~I~ 103 (111)
T 3vdz_A 35 AMQIFVKTLT-GKTITLEVEP----SDTIENVKAKIQDKEGIPP-DQQRLIFAGK-----QLEDGRTLSDYNIQKESTLH 103 (111)
T ss_dssp CEEEEEECSS-SCEEEEEECT----TCBHHHHHHHHHHHHCCCG-GGEEEEETTE-----ECCTTSBTTTTTCCTTCEEE
T ss_pred cEEEEEEeCC-CCEEEEEeCC----CCCHHHHHHHHHHHhCCCh-HHEEEEECCE-----ECCCCCcHHHCCCCCCCEEE
Confidence 3566676422 1456666643 3588899999999999864 5778888542 45666666664334455666
Q ss_pred EEEE
Q 007185 84 IDVH 87 (614)
Q Consensus 84 i~V~ 87 (614)
+.+.
T Consensus 104 l~~r 107 (111)
T 3vdz_A 104 LVLR 107 (111)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 6554
No 134
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=22.61 E-value=45 Score=24.50 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=18.5
Q ss_pred cccCceecCCCCCCCcccc---ceecCCCC
Q 007185 375 MFHKGVRCDGCGVHPITGP---RFKSKVKD 401 (614)
Q Consensus 375 vvH~GV~CDgC~~~pI~G~---RYKCsvC~ 401 (614)
.++.-..||.|+ ..|.|. -|+|.+|.
T Consensus 7 ~~~~pt~C~~C~-~~l~g~~~qg~~C~~C~ 35 (50)
T 1ptq_A 7 NYMSPTFCDHCG-SLLWGLVKQGLKCEDCG 35 (50)
T ss_dssp CCSSCCBCTTTC-CBCCSSSSCEEEETTTC
T ss_pred cCCCCCCcCCCC-ceeeccCCccCEeCCCC
Confidence 345568899998 678874 47777773
No 135
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=22.47 E-value=1.3e+02 Score=23.27 Aligned_cols=70 Identities=20% Similarity=0.282 Sum_probs=41.9
Q ss_pred eEEEEeeCCcceeeeee-cCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceEE
Q 007185 5 MVIKVKYGDTLRRFNAR-VDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLR 83 (614)
Q Consensus 5 lviKvk~gddlRRf~~~-~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L~ 83 (614)
+.||..-|..+. .+. +.. +-+..+|+.+|++..+++ -....|.|. |- .|.|+.-|.++=.+.-..|.
T Consensus 5 i~Vk~~~g~~~~--~l~~v~~----~~tv~~lK~~i~~~~gip-~~~qrL~~~---g~--~L~d~~tL~~~~i~~g~~i~ 72 (78)
T 2faz_A 5 IQVRTMDGRQTH--TVDSLSR----LTKVEELRRKIQELFHVE-PGLQRLFYR---GK--QMEDGHTLFDYEVRLNDTIQ 72 (78)
T ss_dssp EEEEETTSSCEE--EEEEECT----TCBHHHHHHHHHHHHCCC-GGGEEEEET---TE--ECCTTCBTTTTTCCTTCEEE
T ss_pred EEEEECCCCEEE--EEeccCC----CCCHHHHHHHHHHHHCcC-hhhEEEEEC---CE--ECCCCCCHHHcCCCCCCEEE
Confidence 344444465543 444 432 247889999999999986 457788884 42 35566666664323344454
Q ss_pred EEE
Q 007185 84 IDV 86 (614)
Q Consensus 84 i~V 86 (614)
+.+
T Consensus 73 l~~ 75 (78)
T 2faz_A 73 LLV 75 (78)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 136
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=22.36 E-value=47 Score=32.37 Aligned_cols=32 Identities=16% Similarity=0.444 Sum_probs=24.5
Q ss_pred eecCCCCCC-CccccceecCCCCCcchhhhhhhh
Q 007185 380 VRCDGCGVH-PITGPRFKSKVKDDYDLCSICFAA 412 (614)
Q Consensus 380 V~CDgC~~~-pI~G~RYKCsvC~DyDLC~~C~a~ 412 (614)
-.|-.|+.. .+.-.|++|..|- .-+|..|-..
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG-~v~C~~Cs~~ 197 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACG-QIFCGKCSSK 197 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTC-CEECTTTCCE
T ss_pred CCCcCcCCCCCccccccccCCCc-CEeChhhcCC
Confidence 468899753 4677889999995 6689999754
No 137
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=22.05 E-value=42 Score=32.28 Aligned_cols=33 Identities=24% Similarity=0.513 Sum_probs=24.9
Q ss_pred ceecCCCCCC-CccccceecCCCCCcchhhhhhhh
Q 007185 379 GVRCDGCGVH-PITGPRFKSKVKDDYDLCSICFAA 412 (614)
Q Consensus 379 GV~CDgC~~~-pI~G~RYKCsvC~DyDLC~~C~a~ 412 (614)
.-.|-.|+.. .+...|++|-.|- .-+|..|-..
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG-~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCG-QVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTC-CEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcC-CEEChHHhCC
Confidence 3578889753 4677899999996 4589999654
No 138
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=21.62 E-value=1.5e+02 Score=32.76 Aligned_cols=85 Identities=11% Similarity=0.095 Sum_probs=48.0
Q ss_pred eeCCCCcEEEEEEEEeccCCCCCCCcEEEEecCCCCCCCCceeeeccCCCCCCCCEEEEEEEEecCCCCceEEEEEEEEC
Q 007185 492 MMAPSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPADGVPVEGEIDIAVDFTAPELPGRYISYWRMSS 571 (614)
Q Consensus 492 ~V~Pgt~FtKtWrLrN~Gt~~WP~G~~L~fvgGd~m~~~~sv~~~ipv~~v~PGeevdVSV~L~AP~~pG~yiSyWRL~t 571 (614)
.+.+|+. -.|||.|.|... ......+.|..|......+...-.-.|.|||.++|-+++. .||. |-|..
T Consensus 242 ~v~~G~~--vrlrliN~~~~~---~~h~~hlhG~~f~vi~~d~~~~d~v~l~pg~r~~v~~~~~---~pG~----w~~hc 309 (647)
T 1sdd_B 242 RMYEQEW--VRLHLLNLGGSR---DIHVVHFHGQTLLENGTQQHQLGVWPLLPGSFKTLEMKAS---KPGW----WLLDT 309 (647)
T ss_dssp EEETTCE--EEEEEEECCCTT---CCEEEEETTCCEEECSSSCEEESSEEECTTEEEEEEEECC---SSEE----EEEEC
T ss_pred EEcCCCE--EEEEEEeCCCCC---cceeEEEcCcEEEEecCCCcccceEEECCCeEEEEEEEec---cceE----eeccc
Confidence 4566764 459999998753 2345566666653221111111111368999988776653 4676 55655
Q ss_pred CCCCccCCeEEEEEEEe
Q 007185 572 PSGVKFGQRVWVLIQVL 588 (614)
Q Consensus 572 pdG~~FG~~LWv~I~V~ 588 (614)
........-++..+.|.
T Consensus 310 h~~~h~~~Gm~~~~~V~ 326 (647)
T 1sdd_B 310 EVGEIQRAGMQTPFLIV 326 (647)
T ss_dssp CCHHHHTTTCEEEEEEE
T ss_pred Ccccccccccccceeee
Confidence 43333444566667775
No 139
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}
Probab=21.51 E-value=4.1e+02 Score=24.86 Aligned_cols=26 Identities=12% Similarity=0.052 Sum_probs=17.6
Q ss_pred CCCCCCEEEEEEEEecC-CCCceEEEEEEEEC
Q 007185 541 GVPVEGEIDIAVDFTAP-ELPGRYISYWRMSS 571 (614)
Q Consensus 541 ~v~PGeevdVSV~L~AP-~~pG~yiSyWRL~t 571 (614)
.|.||++..|++ .+| .++|+| |=.|+
T Consensus 125 ~l~pGet~svtf--~~~~lkpG~Y---~f~Ct 151 (167)
T 3ay2_A 125 LIGGGEESSLTL--DPAKLADGDY---KFACT 151 (167)
T ss_dssp CBCTTCEEEEEE--CGGGGTTSCE---EEECC
T ss_pred eeCCCCEEEEEE--ecCCCCCcEE---EEEcC
Confidence 378999876655 455 489975 55565
No 140
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*
Probab=21.32 E-value=2.1e+02 Score=32.85 Aligned_cols=71 Identities=15% Similarity=0.174 Sum_probs=50.8
Q ss_pred CCCCcEEEEEEEEeccCCCCCCCcEEEEecCCCCCCCCceeeeccC-CCCCCCCEEEEEEEEecCCCCceEEEEEEEE
Q 007185 494 APSTPFTKIWRMRNTGNLAWPRGSQLVWIGGDKFSDGVSVEIEVPA-DGVPVEGEIDIAVDFTAPELPGRYISYWRMS 570 (614)
Q Consensus 494 ~Pgt~FtKtWrLrN~Gt~~WP~G~~L~fvgGd~m~~~~sv~~~ipv-~~v~PGeevdVSV~L~AP~~pG~yiSyWRL~ 570 (614)
.-|+.++-.=.+.|.=.++- .+|.|..-| --+... +..+.+ ..|.||+++.+.+.|+ |.++|.-+-.=.|.
T Consensus 598 ~v~~~~~v~v~f~NPL~~~L-~~c~~~vEG-~GL~~~---~~~~~~~~~v~pg~~~~~~~~~~-P~~~G~~~L~a~f~ 669 (687)
T 2q3z_A 598 KQKRKLVAEVSLQNPLPVAL-EGCTFTVEG-AGLTEE---QKTVEIPDPVEAGEEVKVRMDLV-PLHMGLHKLVVNFE 669 (687)
T ss_dssp SSSSCEEEEEEEECCSSSCB-CSEEEEEEC-TTTCSS---CEEEEECSCBCTTCEEEEEEEEC-CCSSSCEEEEEEEE
T ss_pred ccCCeEEEEEEEECCCCCcc-cceEEEEEC-CCCCCC---ceEEecCCCcCCCCEEEEEEEEE-eccccceEEEEEEE
Confidence 34899999999999877766 688886554 323321 123444 5799999999999995 99999765443343
No 141
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=20.98 E-value=1.7e+02 Score=22.94 Aligned_cols=71 Identities=27% Similarity=0.389 Sum_probs=42.2
Q ss_pred eEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhc---CCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCce
Q 007185 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLF---NFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKF 81 (614)
Q Consensus 5 lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F---~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~ 81 (614)
+.|.||.-+. +.|.+.+.. +-+..+|+.+|++.| +++ -+...|-|. |- .|.|+.-|.++=.+.-..
T Consensus 6 m~i~vk~~~g-~~~~~~v~~----~~TV~~lK~~i~~~~~~~gip-~~~qrLi~~---Gk--~L~D~~tL~~~~i~~g~~ 74 (85)
T 2wyq_A 6 VTITLKTLQQ-QTFKIRMEP----DETVKVLKEKIEAEKGRDAFP-VAGQKLIYA---GK--ILSDDVPIRDYRIDEKNF 74 (85)
T ss_dssp EEEEEEETTS-CEEEEEECT----TSBHHHHHHHHHHHHCTTTCC-GGGEEEEET---TE--ECCTTSBGGGGCCCTTSE
T ss_pred EEEEEEECCC-CEEEEEECC----CCCHHHHHHHHHhhccccCCC-HHHeEEEEC---CE--ECcCCCCHHHcCCCCCCE
Confidence 4455554211 455666653 357889999999985 454 557788885 32 456666676653333445
Q ss_pred EEEEE
Q 007185 82 LRIDV 86 (614)
Q Consensus 82 L~i~V 86 (614)
|.+.+
T Consensus 75 i~l~~ 79 (85)
T 2wyq_A 75 VVVMV 79 (85)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 54433
No 142
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=20.86 E-value=1.2e+02 Score=24.68 Aligned_cols=62 Identities=24% Similarity=0.382 Sum_probs=40.3
Q ss_pred eeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceEEEEEE
Q 007185 16 RRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFLRIDVH 87 (614)
Q Consensus 16 RRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L~i~V~ 87 (614)
+.|.+.+.. +-+..+|+.+|++.++++ -....|.|. |- .|.|+.-|.++=.+.-..|.+.+.
T Consensus 20 ~~~~l~v~~----~~TV~~LK~~I~~~~gip-~~~qrL~~~---Gk--~L~D~~tL~~~gi~~g~~i~l~~r 81 (88)
T 1sif_A 20 KTFTVEMEP----SDTIENLKAKIQDKEGIP-PDQQRLIFA---GK--QLEDGRTLSDYNIQKESTLHLVLR 81 (88)
T ss_dssp CEEEEECCT----TSBHHHHHHHHHHHHCCC-GGGCEEEET---TE--ECCTTSBSGGGTCCTTCEEEEEC-
T ss_pred CEEEEEECC----CChHHHHHHHHHHHHCcC-hhhEEEEEC---CE--ECCCCCcHHHcCCCCCCEEEEEEe
Confidence 455666653 357889999999999986 458888885 32 456666676642233445555443
No 143
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=20.45 E-value=1.4e+02 Score=25.93 Aligned_cols=78 Identities=15% Similarity=0.103 Sum_probs=50.8
Q ss_pred eEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCC--------------CcceEEEecCCCCEEEecCchh
Q 007185 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHD--------------SDLTLTYVDEDGDIVTLVDDDD 70 (614)
Q Consensus 5 lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~--------------~~~~lkY~DeDGD~VTl~Dd~D 70 (614)
+.|+|+=- +-+.|.+.+.. +-+..+|..+|++.+.++++ +.+.|-|..+ +...|+.-
T Consensus 8 M~I~Vk~l-~g~~~~v~V~~----~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk----~L~dD~~t 78 (105)
T 1v2y_A 8 MTVRVCKM-DGEVMPVVVVQ----NATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGE----KLTEDRKK 78 (105)
T ss_dssp EEEEEECS-SSCEEEEEECT----TCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSC----EECCSSSB
T ss_pred EEEEEEec-CCCEEEEEECC----CChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCc----CccCCcCC
Confidence 44555422 23566777753 34888999999999977553 4578888655 22234567
Q ss_pred HHHHHHccCceEEEEEEecCC
Q 007185 71 LCDVMRQRLKFLRIDVHLNND 91 (614)
Q Consensus 71 L~~a~~q~l~~L~i~V~l~~~ 91 (614)
|.++=.+.-.+|.+.+.+.+.
T Consensus 79 L~dygI~~g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 79 LRDYGIRNRDEVSFIKKLGQK 99 (105)
T ss_dssp HHHHTCCSSEEEEEEECSCSC
T ss_pred HHHcCCCCCCEEEEEehhccC
Confidence 888655667788877766554
No 144
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.43 E-value=4.7e+02 Score=23.51 Aligned_cols=75 Identities=19% Similarity=0.295 Sum_probs=51.8
Q ss_pred ceeEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhcCCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCceE
Q 007185 3 STMVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLFNFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKFL 82 (614)
Q Consensus 3 ~~lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~L 82 (614)
+.+.||++..-+=-+|.+.+. .+.+..+|...++..|+.+ -+...|.|. |=+ |-|++=|..+=.+.-..+
T Consensus 14 ~~itvkv~l~~~~~k~tv~v~----~d~TV~dLKe~ls~~~~iP-~e~qrLIy~---GKi--LKD~eTL~~~gIk~g~TI 83 (118)
T 2daf_A 14 SLATVKVVLIPVGQEIVIPFK----VDTILKYLKDHFSHLLGIP-HSVLQIRYS---GKI--LKNNETLVQHGVKPQEIV 83 (118)
T ss_dssp SCEEEEEEETTTCCEEEEEEC----SSSCSHHHHHHHHHHHTCC-TTTEEEEET---TEE--ECSSCCHHHHSCCSSCEE
T ss_pred ccEEEEEEEcCCCcEEEEEeC----CCCcHHHHHHHHHhhhCCC-hHHEEEEEC---CeE--cCCcchHHHcCCCCCCEE
Confidence 457899884433356677764 3467889999999999985 668889996 543 467777777644445566
Q ss_pred EEEEE
Q 007185 83 RIDVH 87 (614)
Q Consensus 83 ~i~V~ 87 (614)
.+.+.
T Consensus 84 hLvi~ 88 (118)
T 2daf_A 84 QVEIF 88 (118)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 66554
No 145
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=20.37 E-value=3.1e+02 Score=22.41 Aligned_cols=69 Identities=26% Similarity=0.386 Sum_probs=43.0
Q ss_pred eEEEEeeCCcceeeeeecCCCCCccccHHHHHHHHHHhc---CCCCCCcceEEEecCCCCEEEecCchhHHHHHHccCce
Q 007185 5 MVIKVKYGDTLRRFNARVDENEKLDLDIDGLRAKIKSLF---NFPHDSDLTLTYVDEDGDIVTLVDDDDLCDVMRQRLKF 81 (614)
Q Consensus 5 lviKvk~gddlRRf~~~~~~n~~~~l~~~~L~~~i~~~F---~l~~~~~~~lkY~DeDGD~VTl~Dd~DL~~a~~q~l~~ 81 (614)
+.||..-|. .|.+.+.. +-+..+|+.+|++.+ +++ -....|.|. | -.|.|+.-|.++=.+....
T Consensus 3 I~Vk~~~g~---~~~~~v~~----~~TV~~LK~~I~~~~~~~gip-~~~qrLi~~---G--k~L~D~~tL~~ygI~~g~~ 69 (95)
T 1uel_A 3 VTLKTLQQQ---TFKIDIDP----EETVKALKEKIESEKGKDAFP-VAGQKLIYA---G--KILNDDTALKEYKIDEKNF 69 (95)
T ss_dssp EEEEETTCC---EEEEECCT----TSBHHHHHHHHHHHHCTTTCC-TTTEEEEET---T--EECCTTSBGGGGTCCSSSE
T ss_pred EEEEeCCCC---EEEEEECC----CCHHHHHHHHHHhhcccCCCC-hhhEEEEEC---C--EECCCcCcHHHCCCCCCCE
Confidence 445544354 45666653 357889999999995 464 557888885 3 2456666676653344455
Q ss_pred EEEEE
Q 007185 82 LRIDV 86 (614)
Q Consensus 82 L~i~V 86 (614)
|.+.+
T Consensus 70 i~l~~ 74 (95)
T 1uel_A 70 VVVMV 74 (95)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 65544
No 146
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.35 E-value=47 Score=27.39 Aligned_cols=27 Identities=19% Similarity=0.377 Sum_probs=19.7
Q ss_pred CcccCceecCCCCCCCcccc---ceecCCCC
Q 007185 374 GMFHKGVRCDGCGVHPITGP---RFKSKVKD 401 (614)
Q Consensus 374 ~vvH~GV~CDgC~~~pI~G~---RYKCsvC~ 401 (614)
..++.-..||.|+ ..|.|. -|+|.+|.
T Consensus 23 ~~~~~pt~C~~C~-~~lwGl~kqg~~C~~C~ 52 (83)
T 2yuu_A 23 TFFGQPTFCSVCK-DFVWGLNKQGYKCRQCN 52 (83)
T ss_dssp ECCSSCCCCSSSC-CCCCSSSCCEEEETTTC
T ss_pred EeCCCCcChhhcC-hhhccccccccccCCcC
Confidence 3456678999998 678874 47777773
Done!