Query 007188
Match_columns 614
No_of_seqs 26 out of 28
Neff 2.7
Searched_HMMs 46136
Date Thu Mar 28 20:08:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007188.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007188hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10698 phage shock protein P 93.3 2.7 5.8E-05 41.9 14.2 107 1-112 22-134 (222)
2 PRK00846 hypothetical protein; 92.6 0.67 1.5E-05 40.3 7.8 57 58-114 8-64 (77)
3 COG2900 SlyX Uncharacterized p 91.8 0.64 1.4E-05 40.3 6.7 54 59-112 4-57 (72)
4 TIGR02977 phageshock_pspA phag 91.4 8.3 0.00018 38.0 14.8 107 1-112 22-134 (219)
5 PF04102 SlyX: SlyX; InterPro 91.2 0.59 1.3E-05 39.0 5.8 52 60-111 1-52 (69)
6 PRK02793 phi X174 lysis protei 90.2 1.7 3.7E-05 36.9 7.7 54 61-114 6-59 (72)
7 PRK02119 hypothetical protein; 89.6 2.1 4.5E-05 36.5 7.7 55 60-114 6-60 (73)
8 PF04012 PspA_IM30: PspA/IM30 88.8 20 0.00043 34.8 14.8 106 1-111 21-132 (221)
9 PRK00295 hypothetical protein; 88.7 2.9 6.3E-05 35.2 7.9 52 61-112 3-54 (68)
10 PRK04325 hypothetical protein; 86.1 4.6 9.9E-05 34.5 7.8 53 60-112 6-58 (74)
11 PRK04406 hypothetical protein; 85.9 4.5 9.9E-05 34.8 7.7 56 59-114 7-62 (75)
12 KOG2008 BTK-associated SH3-dom 84.5 36 0.00077 37.3 15.1 49 10-62 121-169 (426)
13 PF05377 FlaC_arch: Flagella a 84.1 2.2 4.7E-05 35.4 4.8 36 78-113 1-36 (55)
14 PRK09039 hypothetical protein; 83.1 9.8 0.00021 40.3 10.4 69 31-103 113-184 (343)
15 PRK00736 hypothetical protein; 81.2 10 0.00022 32.0 7.8 53 60-112 2-54 (68)
16 PHA02562 46 endonuclease subun 78.8 31 0.00067 37.3 12.5 94 5-112 151-248 (562)
17 PRK10884 SH3 domain-containing 78.1 18 0.00039 36.2 9.8 78 23-111 89-166 (206)
18 PF14193 DUF4315: Domain of un 77.3 7.5 0.00016 34.3 6.1 42 71-112 16-62 (83)
19 PF08826 DMPK_coil: DMPK coile 76.1 20 0.00043 30.2 7.9 57 49-112 4-60 (61)
20 PRK11637 AmiB activator; Provi 75.9 67 0.0014 34.5 13.9 37 74-110 216-252 (428)
21 PF00038 Filament: Intermediat 75.7 95 0.0021 31.4 15.1 104 6-110 170-281 (312)
22 PF04859 DUF641: Plant protein 74.3 33 0.00071 32.7 9.9 95 8-105 22-122 (131)
23 PRK00106 hypothetical protein; 72.6 87 0.0019 35.8 14.3 62 7-69 26-89 (535)
24 COG1842 PspA Phage shock prote 72.2 1.2E+02 0.0026 31.0 13.9 106 1-111 22-133 (225)
25 PF00261 Tropomyosin: Tropomyo 71.8 1E+02 0.0022 30.8 13.2 23 89-111 195-217 (237)
26 PF00769 ERM: Ezrin/radixin/mo 71.3 46 0.001 33.9 10.8 30 22-51 21-50 (246)
27 PF04012 PspA_IM30: PspA/IM30 70.8 1.1E+02 0.0023 29.8 14.4 101 7-108 39-143 (221)
28 PF08317 Spc7: Spc7 kinetochor 70.7 96 0.0021 32.5 13.3 48 64-111 217-264 (325)
29 smart00787 Spc7 Spc7 kinetocho 69.9 1.3E+02 0.0029 31.9 14.1 50 63-112 211-260 (312)
30 KOG0728 26S proteasome regulat 69.7 9 0.00019 41.0 5.6 48 57-104 18-65 (404)
31 PRK12704 phosphodiesterase; Pr 68.2 1.2E+02 0.0025 34.4 14.0 33 79-111 105-137 (520)
32 TIGR03017 EpsF chain length de 67.3 1.2E+02 0.0027 32.0 13.4 21 92-112 255-275 (444)
33 cd07651 F-BAR_PombeCdc15_like 67.1 1.4E+02 0.003 29.6 13.7 71 42-112 111-185 (236)
34 PRK11637 AmiB activator; Provi 66.8 70 0.0015 34.4 11.6 49 62-110 81-129 (428)
35 PF15290 Syntaphilin: Golgi-lo 66.6 16 0.00035 38.9 6.7 56 60-115 72-141 (305)
36 PF09726 Macoilin: Transmembra 65.0 1.1E+02 0.0024 36.0 13.4 41 4-47 487-527 (697)
37 cd07596 BAR_SNX The Bin/Amphip 64.5 1.2E+02 0.0026 28.1 12.5 29 76-104 144-172 (218)
38 KOG2891 Surface glycoprotein [ 64.2 50 0.0011 35.8 9.7 79 22-101 347-431 (445)
39 KOG0976 Rho/Rac1-interacting s 64.0 55 0.0012 39.6 10.8 46 66-111 102-147 (1265)
40 TIGR01005 eps_transp_fam exopo 63.3 1.8E+02 0.0039 33.4 14.5 18 3-20 165-182 (754)
41 PF11932 DUF3450: Protein of u 62.0 1.8E+02 0.0039 29.2 13.0 98 18-115 22-122 (251)
42 PF10212 TTKRSYEDQ: Predicted 60.2 29 0.00063 39.5 7.6 62 52-113 423-484 (518)
43 PF05701 WEMBL: Weak chloropla 59.5 2.3E+02 0.0049 31.9 14.2 46 7-52 139-190 (522)
44 PF06428 Sec2p: GDP/GTP exchan 59.4 5 0.00011 36.3 1.4 78 25-113 6-87 (100)
45 TIGR03319 YmdA_YtgF conserved 59.0 2.2E+02 0.0048 32.2 14.0 15 213-227 262-276 (514)
46 PF10018 Med4: Vitamin-D-recep 58.2 55 0.0012 31.8 8.2 61 50-111 3-63 (188)
47 PRK00106 hypothetical protein; 58.0 2.5E+02 0.0055 32.2 14.4 15 213-227 283-297 (535)
48 cd07647 F-BAR_PSTPIP The F-BAR 58.0 2.1E+02 0.0045 28.6 12.4 103 9-111 57-187 (239)
49 TIGR03007 pepcterm_ChnLen poly 57.9 76 0.0017 34.2 10.0 44 3-46 132-180 (498)
50 PF06632 XRCC4: DNA double-str 57.8 1.1E+02 0.0024 33.0 11.2 62 35-97 145-214 (342)
51 TIGR01834 PHA_synth_III_E poly 57.2 66 0.0014 34.7 9.3 82 11-101 230-313 (320)
52 PF10186 Atg14: UV radiation r 57.0 1.1E+02 0.0024 30.1 10.2 13 217-229 212-224 (302)
53 KOG0161 Myosin class II heavy 55.8 68 0.0015 41.7 10.5 81 30-111 1037-1117(1930)
54 PF04977 DivIC: Septum formati 55.5 43 0.00093 27.0 6.0 39 74-112 21-62 (80)
55 PF00261 Tropomyosin: Tropomyo 54.5 1.9E+02 0.0041 29.0 11.5 29 21-49 107-135 (237)
56 PF04102 SlyX: SlyX; InterPro 53.9 37 0.00081 28.4 5.5 35 77-111 4-38 (69)
57 PF08317 Spc7: Spc7 kinetochor 53.7 2.5E+02 0.0055 29.4 12.7 21 82-102 242-262 (325)
58 PF06476 DUF1090: Protein of u 53.3 89 0.0019 28.9 8.3 69 4-89 42-115 (115)
59 PF07106 TBPIP: Tat binding pr 52.2 59 0.0013 30.7 7.2 54 62-115 78-140 (169)
60 PF13815 Dzip-like_N: Iguana/D 52.0 40 0.00087 30.5 5.9 62 48-112 54-115 (118)
61 TIGR02680 conserved hypothetic 51.8 2.5E+02 0.0055 35.2 14.1 28 24-51 872-899 (1353)
62 TIGR02231 conserved hypothetic 51.7 1.7E+02 0.0036 32.4 11.5 36 77-112 138-173 (525)
63 TIGR01010 BexC_CtrB_KpsE polys 51.2 1.7E+02 0.0038 30.4 11.1 50 3-57 141-193 (362)
64 KOG0994 Extracellular matrix g 50.1 1.3E+02 0.0029 37.9 11.1 34 78-111 1711-1744(1758)
65 PRK04406 hypothetical protein; 50.0 54 0.0012 28.3 6.0 37 75-111 9-45 (75)
66 PF00170 bZIP_1: bZIP transcri 50.0 55 0.0012 26.5 5.8 39 74-112 23-61 (64)
67 smart00338 BRLZ basic region l 49.5 53 0.0011 26.6 5.6 38 75-112 24-61 (65)
68 cd04766 HTH_HspR Helix-Turn-He 49.4 45 0.00097 28.5 5.5 76 21-102 3-90 (91)
69 KOG0994 Extracellular matrix g 48.8 18 0.0004 44.7 4.0 77 8-90 1291-1367(1758)
70 PF10805 DUF2730: Protein of u 48.4 96 0.0021 27.9 7.6 39 74-112 46-86 (106)
71 TIGR02169 SMC_prok_A chromosom 48.3 4.1E+02 0.0089 31.2 14.4 11 33-43 307-317 (1164)
72 TIGR03825 FliH_bacil flagellar 48.1 2.4E+02 0.0053 28.5 11.2 14 206-219 231-244 (255)
73 PF05278 PEARLI-4: Arabidopsis 47.6 89 0.0019 33.1 8.3 64 49-112 186-249 (269)
74 KOG0161 Myosin class II heavy 47.1 2.8E+02 0.0062 36.5 13.8 40 33-73 1469-1508(1930)
75 PRK09841 cryptic autophosphory 47.1 2.6E+02 0.0057 32.4 12.6 17 3-19 238-254 (726)
76 PRK11519 tyrosine kinase; Prov 46.1 1.7E+02 0.0038 33.8 11.0 45 2-48 237-281 (719)
77 PF09325 Vps5: Vps5 C terminal 46.1 95 0.0021 29.8 7.7 31 75-105 161-191 (236)
78 TIGR01843 type_I_hlyD type I s 45.9 3.6E+02 0.0077 27.8 13.9 9 77-85 210-218 (423)
79 PF05615 THOC7: Tho complex su 45.7 1.5E+02 0.0033 27.1 8.7 54 53-110 61-114 (139)
80 PF08614 ATG16: Autophagy prot 45.6 47 0.001 32.2 5.6 44 67-110 106-149 (194)
81 PRK10803 tol-pal system protei 45.5 41 0.00089 34.4 5.4 38 75-112 52-89 (263)
82 PF12709 Kinetocho_Slk19: Cent 45.1 2.4E+02 0.0052 25.6 10.1 74 20-109 8-81 (87)
83 COG3883 Uncharacterized protei 44.7 60 0.0013 34.2 6.5 55 58-112 33-87 (265)
84 PF08172 CASP_C: CASP C termin 44.5 40 0.00087 34.7 5.2 36 76-111 92-131 (248)
85 PRK00736 hypothetical protein; 44.5 56 0.0012 27.6 5.2 35 77-111 5-39 (68)
86 PHA03161 hypothetical protein; 44.2 87 0.0019 30.8 7.1 58 48-112 56-114 (150)
87 PRK00295 hypothetical protein; 43.8 58 0.0013 27.5 5.2 35 77-111 5-39 (68)
88 COG4026 Uncharacterized protei 43.4 75 0.0016 33.5 6.9 61 50-110 120-189 (290)
89 KOG3335 Predicted coiled-coil 43.0 62 0.0014 32.6 6.0 56 63-120 93-148 (181)
90 PF14817 HAUS5: HAUS augmin-li 42.9 2.5E+02 0.0054 33.0 11.5 101 15-117 331-443 (632)
91 PRK02224 chromosome segregatio 42.8 5.3E+02 0.012 30.0 14.2 20 28-47 531-550 (880)
92 PF13815 Dzip-like_N: Iguana/D 42.7 1.4E+02 0.003 27.2 7.8 54 48-101 65-118 (118)
93 PF06005 DUF904: Protein of un 41.8 66 0.0014 27.7 5.3 28 79-106 6-33 (72)
94 PF05911 DUF869: Plant protein 41.5 4.3E+02 0.0094 31.8 13.3 91 22-112 619-715 (769)
95 PF07321 YscO: Type III secret 41.3 1E+02 0.0022 29.8 7.1 52 51-105 2-53 (152)
96 PRK00409 recombination and DNA 41.3 5.8E+02 0.013 30.4 14.4 10 210-219 716-725 (782)
97 PRK09039 hypothetical protein; 41.2 3.8E+02 0.0083 28.7 11.9 32 79-110 153-184 (343)
98 TIGR00606 rad50 rad50. This fa 41.1 5.2E+02 0.011 32.2 14.5 104 8-111 234-346 (1311)
99 PRK14011 prefoldin subunit alp 41.1 53 0.0012 31.4 5.1 36 75-110 93-128 (144)
100 PF10211 Ax_dynein_light: Axon 40.9 1.8E+02 0.0038 28.8 8.7 25 77-101 127-151 (189)
101 PRK09174 F0F1 ATP synthase sub 40.6 3.9E+02 0.0084 26.8 11.2 45 16-60 87-131 (204)
102 PRK04325 hypothetical protein; 40.5 68 0.0015 27.5 5.2 34 78-111 10-43 (74)
103 PF15136 UPF0449: Uncharacteri 39.9 94 0.002 28.6 6.2 38 73-110 56-93 (97)
104 PRK10476 multidrug resistance 39.6 4.5E+02 0.0097 27.2 12.8 11 8-18 86-96 (346)
105 PF05667 DUF812: Protein of un 39.6 4.5E+02 0.0097 30.6 12.8 101 9-113 380-483 (594)
106 PF09730 BicD: Microtubule-ass 39.5 2.1E+02 0.0044 34.2 10.3 95 31-125 363-473 (717)
107 KOG4552 Vitamin-D-receptor int 39.2 4.7E+02 0.01 27.6 11.7 97 15-117 17-125 (272)
108 PF11180 DUF2968: Protein of u 39.1 3.6E+02 0.0079 27.6 10.7 42 18-59 109-151 (192)
109 PRK00846 hypothetical protein; 38.9 73 0.0016 28.0 5.2 36 77-112 13-48 (77)
110 PF02996 Prefoldin: Prefoldin 38.4 59 0.0013 28.4 4.6 36 76-111 83-118 (120)
111 TIGR03319 YmdA_YtgF conserved 38.3 3.7E+02 0.0081 30.5 11.8 8 211-218 226-233 (514)
112 COG4942 Membrane-bound metallo 37.5 4E+02 0.0086 30.1 11.6 60 46-108 196-255 (420)
113 PF10186 Atg14: UV radiation r 37.5 4.1E+02 0.009 26.1 14.6 86 23-112 59-147 (302)
114 PRK03918 chromosome segregatio 37.3 7E+02 0.015 28.9 14.0 9 202-210 787-795 (880)
115 TIGR01062 parC_Gneg DNA topois 37.1 3.4E+02 0.0073 32.4 11.6 90 5-111 370-465 (735)
116 PF12718 Tropomyosin_1: Tropom 36.6 3.8E+02 0.0082 25.5 12.6 96 12-111 6-114 (143)
117 cd00890 Prefoldin Prefoldin is 36.2 81 0.0018 27.7 5.2 36 76-111 93-128 (129)
118 PRK02793 phi X174 lysis protei 35.9 95 0.0021 26.5 5.3 35 77-111 8-42 (72)
119 PF13600 DUF4140: N-terminal d 35.7 76 0.0016 27.5 4.8 35 76-110 69-103 (104)
120 PF04849 HAP1_N: HAP1 N-termin 35.6 1.6E+02 0.0035 31.8 8.1 78 8-112 55-132 (306)
121 PRK02119 hypothetical protein; 35.3 93 0.002 26.7 5.2 35 77-111 9-43 (73)
122 TIGR02231 conserved hypothetic 35.2 2.7E+02 0.0059 30.8 10.0 25 81-105 149-173 (525)
123 COG4942 Membrane-bound metallo 35.2 95 0.0021 34.7 6.5 56 56-112 39-94 (420)
124 TIGR01069 mutS2 MutS2 family p 35.2 2.2E+02 0.0049 33.6 9.9 33 77-109 558-590 (771)
125 COG1196 Smc Chromosome segrega 34.3 7.9E+02 0.017 30.3 14.4 10 209-218 948-957 (1163)
126 TIGR01000 bacteriocin_acc bact 33.7 5.8E+02 0.013 27.8 12.0 38 81-120 288-325 (457)
127 COG2900 SlyX Uncharacterized p 33.4 1.1E+02 0.0023 27.1 5.2 36 76-111 7-42 (72)
128 PRK00888 ftsB cell division pr 33.4 1.1E+02 0.0023 27.8 5.5 40 73-112 30-72 (105)
129 PRK04654 sec-independent trans 32.8 2.1E+02 0.0045 29.7 8.0 35 78-112 55-89 (214)
130 cd07667 BAR_SNX30 The Bin/Amph 32.8 2.3E+02 0.005 29.5 8.4 53 49-101 146-198 (240)
131 PF12761 End3: Actin cytoskele 32.4 3.6E+02 0.0077 27.6 9.5 28 77-111 167-194 (195)
132 PF02601 Exonuc_VII_L: Exonucl 32.2 5.8E+02 0.012 26.2 11.9 27 13-39 136-162 (319)
133 PRK14154 heat shock protein Gr 31.6 78 0.0017 32.2 4.8 35 78-112 53-87 (208)
134 cd00584 Prefoldin_alpha Prefol 31.4 1.1E+02 0.0023 27.5 5.2 45 63-110 83-127 (129)
135 PRK05561 DNA topoisomerase IV 31.3 4.2E+02 0.0091 31.5 11.2 70 46-115 419-489 (742)
136 TIGR02680 conserved hypothetic 31.2 4.3E+02 0.0094 33.3 11.8 31 77-107 935-965 (1353)
137 PF12128 DUF3584: Protein of u 31.0 6.9E+02 0.015 31.0 13.3 89 23-111 245-333 (1201)
138 PF09731 Mitofilin: Mitochondr 30.9 8E+02 0.017 27.5 13.0 30 74-103 375-404 (582)
139 PF11221 Med21: Subunit 21 of 30.8 95 0.0021 29.1 5.0 36 74-109 101-140 (144)
140 PF03528 Rabaptin: Rabaptin; 30.6 56 0.0012 30.3 3.3 79 12-110 1-84 (106)
141 COG2178 Predicted RNA-binding 30.5 1.9E+02 0.004 29.9 7.2 64 38-107 10-73 (204)
142 COG1196 Smc Chromosome segrega 30.5 9.4E+02 0.02 29.7 14.2 9 243-251 1031-1039(1163)
143 PRK15422 septal ring assembly 30.5 87 0.0019 28.0 4.3 27 79-105 6-32 (79)
144 PF07139 DUF1387: Protein of u 30.4 3E+02 0.0066 29.8 9.0 70 9-103 186-255 (302)
145 PRK13729 conjugal transfer pil 30.1 1.4E+02 0.003 34.0 6.8 33 80-112 93-125 (475)
146 PF10234 Cluap1: Clusterin-ass 29.9 6E+02 0.013 27.0 11.0 34 79-112 185-218 (267)
147 KOG0804 Cytoplasmic Zn-finger 29.9 6.1E+02 0.013 29.2 11.6 22 77-98 389-410 (493)
148 PF05615 THOC7: Tho complex su 29.9 4.4E+02 0.0096 24.2 10.4 61 51-111 48-108 (139)
149 PF09969 DUF2203: Uncharacteri 29.8 1.9E+02 0.004 27.0 6.6 38 46-91 4-41 (120)
150 PF06698 DUF1192: Protein of u 29.5 86 0.0019 26.4 4.0 26 79-111 23-48 (59)
151 PF04977 DivIC: Septum formati 29.5 1.5E+02 0.0033 23.9 5.3 39 74-112 14-52 (80)
152 PF12737 Mating_C: C-terminal 29.2 48 0.001 36.7 3.2 28 64-100 391-418 (419)
153 cd07653 F-BAR_CIP4-like The F- 29.2 5.7E+02 0.012 25.2 11.5 28 9-36 62-89 (251)
154 PF04576 Zein-binding: Zein-bi 29.2 2.7E+02 0.0058 25.6 7.3 59 45-107 31-93 (94)
155 KOG2398 Predicted proline-seri 29.1 7.5E+02 0.016 29.1 12.5 28 85-112 140-167 (611)
156 PF05266 DUF724: Protein of un 28.8 5.3E+02 0.011 25.8 9.9 18 93-110 161-178 (190)
157 PTZ00454 26S protease regulato 28.7 1.6E+02 0.0034 32.1 6.8 37 76-112 28-64 (398)
158 PRK14162 heat shock protein Gr 28.7 1E+02 0.0022 31.0 5.0 36 77-112 39-74 (194)
159 PF05911 DUF869: Plant protein 28.5 6.2E+02 0.013 30.6 11.9 93 16-109 74-166 (769)
160 PF03194 LUC7: LUC7 N_terminus 28.5 5.6E+02 0.012 26.6 10.4 78 11-90 81-159 (254)
161 KOG3684 Ca2+-activated K+ chan 28.3 5E+02 0.011 29.9 10.6 21 80-100 444-464 (489)
162 PRK03947 prefoldin subunit alp 28.3 1.3E+02 0.0029 27.4 5.4 36 76-111 100-135 (140)
163 PF05701 WEMBL: Weak chloropla 28.3 9.1E+02 0.02 27.3 13.4 26 87-112 305-330 (522)
164 PF11559 ADIP: Afadin- and alp 28.1 4.9E+02 0.011 24.1 11.0 42 66-107 83-124 (151)
165 PF07106 TBPIP: Tat binding pr 28.0 77 0.0017 29.9 3.9 39 66-106 70-108 (169)
166 PRK13182 racA polar chromosome 27.9 2E+02 0.0044 28.4 6.8 25 71-95 119-143 (175)
167 PHA02562 46 endonuclease subun 27.9 8.2E+02 0.018 26.7 14.7 46 77-122 248-293 (562)
168 KOG0250 DNA repair protein RAD 27.8 1.1E+03 0.024 29.8 14.0 36 76-111 400-435 (1074)
169 PF07716 bZIP_2: Basic region 27.8 1.6E+02 0.0034 23.3 5.0 31 75-105 23-53 (54)
170 TIGR00293 prefoldin, archaeal 27.5 1.2E+02 0.0025 27.2 4.8 35 75-109 91-125 (126)
171 KOG4673 Transcription factor T 27.5 4.7E+02 0.01 31.8 10.5 97 8-104 389-508 (961)
172 PF15456 Uds1: Up-regulated Du 27.3 2.7E+02 0.0059 26.2 7.2 81 7-100 24-111 (124)
173 cd00632 Prefoldin_beta Prefold 27.2 1.5E+02 0.0031 26.2 5.2 35 77-111 70-104 (105)
174 PF14915 CCDC144C: CCDC144C pr 26.8 5.3E+02 0.012 28.1 10.1 84 30-113 154-243 (305)
175 PRK14140 heat shock protein Gr 26.8 1.1E+02 0.0024 30.7 4.9 35 78-112 38-72 (191)
176 PF13094 CENP-Q: CENP-Q, a CEN 26.8 1.3E+02 0.0027 28.3 5.1 31 79-109 50-80 (160)
177 KOG0933 Structural maintenance 26.7 7.7E+02 0.017 31.1 12.3 109 1-111 156-278 (1174)
178 PF08614 ATG16: Autophagy prot 26.5 1.1E+02 0.0023 29.8 4.6 29 76-104 129-157 (194)
179 PRK04778 septation ring format 26.3 4.2E+02 0.009 30.0 9.7 36 77-112 390-425 (569)
180 KOG2264 Exostosin EXT1L [Signa 26.2 2.3E+02 0.0049 33.6 7.7 61 51-111 81-141 (907)
181 PRK10884 SH3 domain-containing 26.2 2.1E+02 0.0045 28.9 6.7 36 77-112 118-153 (206)
182 PF05529 Bap31: B-cell recepto 26.2 2.2E+02 0.0047 27.4 6.6 25 88-112 158-182 (192)
183 PF07926 TPR_MLP1_2: TPR/MLP1/ 25.8 5.3E+02 0.011 23.8 10.1 36 76-111 58-93 (132)
184 KOG2991 Splicing regulator [RN 25.6 1.4E+02 0.003 32.2 5.5 57 59-115 232-302 (330)
185 cd00187 TOP4c DNA Topoisomeras 25.1 6.7E+02 0.014 28.2 10.9 31 78-108 413-443 (445)
186 PRK14160 heat shock protein Gr 25.1 1.7E+02 0.0037 29.9 5.9 38 75-112 59-96 (211)
187 PRK03918 chromosome segregatio 24.9 7.2E+02 0.016 28.8 11.5 32 81-112 249-280 (880)
188 PF01576 Myosin_tail_1: Myosin 24.8 24 0.00053 41.7 0.0 48 21-69 596-643 (859)
189 PF08537 NBP1: Fungal Nap bind 24.8 1.3E+02 0.0028 32.7 5.3 34 73-106 178-211 (323)
190 KOG0977 Nuclear envelope prote 24.8 6.7E+02 0.014 29.3 11.0 46 66-111 151-196 (546)
191 PF10146 zf-C4H2: Zinc finger- 24.5 8E+02 0.017 25.4 11.2 87 24-113 5-103 (230)
192 PF12269 zf-CpG_bind_C: CpG bi 24.4 2.1E+02 0.0046 29.8 6.5 66 55-120 3-72 (236)
193 COG3074 Uncharacterized protei 24.3 1.4E+02 0.0029 26.7 4.3 28 79-106 6-33 (79)
194 PF02050 FliJ: Flagellar FliJ 24.0 4.2E+02 0.0091 22.0 11.2 34 77-110 59-92 (123)
195 TIGR03825 FliH_bacil flagellar 23.7 7.8E+02 0.017 25.0 11.9 13 38-50 93-105 (255)
196 COG2433 Uncharacterized conser 23.6 2E+02 0.0043 33.9 6.7 16 212-227 579-594 (652)
197 KOG0612 Rho-associated, coiled 23.5 5.9E+02 0.013 32.6 10.8 48 4-53 646-693 (1317)
198 TIGR03185 DNA_S_dndD DNA sulfu 23.4 5.3E+02 0.011 29.5 10.0 33 77-109 435-467 (650)
199 PRK14148 heat shock protein Gr 23.3 1.5E+02 0.0032 29.9 5.1 34 79-112 42-75 (195)
200 PF04728 LPP: Lipoprotein leuc 23.2 2.3E+02 0.005 23.9 5.3 24 78-101 4-27 (56)
201 PRK14150 heat shock protein Gr 23.1 1.4E+02 0.0031 29.7 4.9 34 76-112 40-73 (193)
202 PF10475 DUF2450: Protein of u 22.9 1.4E+02 0.003 30.6 5.0 37 73-109 63-99 (291)
203 KOG0963 Transcription factor/C 22.9 1.3E+03 0.029 27.5 13.1 101 8-112 230-338 (629)
204 TIGR01933 hflK HflK protein. H 22.8 5.1E+02 0.011 25.7 8.7 45 22-69 151-195 (261)
205 PRK11166 chemotaxis regulator 22.7 4.8E+02 0.01 26.9 8.5 57 17-76 57-113 (214)
206 TIGR01242 26Sp45 26S proteasom 22.6 1.6E+02 0.0034 30.8 5.3 36 77-112 6-41 (364)
207 KOG4807 F-actin binding protei 22.6 1.1E+03 0.024 27.2 11.7 96 7-109 387-492 (593)
208 TIGR02338 gimC_beta prefoldin, 22.5 2E+02 0.0043 25.7 5.3 44 46-89 64-107 (110)
209 PRK14158 heat shock protein Gr 22.4 1.6E+02 0.0034 29.7 5.0 35 78-112 41-75 (194)
210 TIGR02499 HrpE_YscL_not type I 22.4 3.6E+02 0.0078 24.7 7.0 43 15-57 15-63 (166)
211 PRK00409 recombination and DNA 22.4 5.3E+02 0.012 30.7 10.0 38 75-112 561-598 (782)
212 PF05852 DUF848: Gammaherpesvi 22.4 6.4E+02 0.014 24.8 8.9 53 53-112 62-114 (146)
213 PF11853 DUF3373: Protein of u 22.3 93 0.002 35.4 3.8 17 78-94 32-48 (489)
214 PF10498 IFT57: Intra-flagella 22.2 6.1E+02 0.013 27.7 9.7 41 72-112 275-315 (359)
215 PF15556 Zwint: ZW10 interacto 22.0 9.5E+02 0.021 25.4 14.1 61 8-76 69-132 (252)
216 PTZ00121 MAEBL; Provisional 22.0 9.4E+02 0.02 31.9 12.0 103 1-110 1184-1286(2084)
217 PRK12705 hypothetical protein; 21.7 1.1E+03 0.023 27.2 11.8 89 21-112 31-119 (508)
218 TIGR02971 heterocyst_DevB ABC 21.6 4.7E+02 0.01 26.6 8.3 72 39-111 53-124 (327)
219 KOG0993 Rab5 GTPase effector R 21.6 1.1E+03 0.023 27.4 11.4 106 11-116 57-208 (542)
220 PRK13979 DNA topoisomerase IV 21.6 5.9E+02 0.013 31.4 10.3 90 5-111 389-487 (957)
221 TIGR01005 eps_transp_fam exopo 21.4 1.3E+03 0.028 26.7 13.5 36 6-41 172-222 (754)
222 KOG3684 Ca2+-activated K+ chan 21.4 8.4E+02 0.018 28.2 10.7 25 85-109 424-448 (489)
223 PF06320 GCN5L1: GCN5-like pro 21.3 5.6E+02 0.012 23.9 8.1 51 38-88 11-61 (121)
224 PF14131 DUF4298: Domain of un 20.9 2.2E+02 0.0047 25.1 5.1 34 78-111 1-34 (90)
225 KOG0243 Kinesin-like protein [ 20.8 4.7E+02 0.01 32.7 9.3 35 75-109 481-515 (1041)
226 PF12718 Tropomyosin_1: Tropom 20.8 3.3E+02 0.0071 25.9 6.5 21 24-44 11-31 (143)
227 PF06008 Laminin_I: Laminin Do 20.7 7.6E+02 0.017 25.0 9.5 12 50-61 158-169 (264)
228 PRK14139 heat shock protein Gr 20.5 1.8E+02 0.0038 29.2 4.9 23 78-100 40-62 (185)
229 PF01025 GrpE: GrpE; InterPro 20.4 40 0.00087 31.2 0.5 38 75-112 9-46 (165)
230 COG3937 Uncharacterized conser 20.4 2.7E+02 0.0059 26.3 5.8 12 75-86 66-77 (108)
231 PRK10559 p-hydroxybenzoic acid 20.4 3.9E+02 0.0084 27.7 7.5 43 76-120 121-163 (310)
232 smart00338 BRLZ basic region l 20.3 1.9E+02 0.0042 23.3 4.3 32 77-108 33-64 (65)
233 PRK14143 heat shock protein Gr 20.3 1.8E+02 0.0038 30.2 5.0 36 77-112 67-102 (238)
No 1
>PRK10698 phage shock protein PspA; Provisional
Probab=93.28 E-value=2.7 Score=41.95 Aligned_cols=107 Identities=13% Similarity=0.237 Sum_probs=61.1
Q ss_pred CcchHHH-----HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhcHH-HHHHHHHHhhhhhchhhhHHHHhhHH
Q 007188 1 MAESEKM-----VALKKAYADIILNTAREAAARIMASERQALRFEKDLSNTKD-EALRLLVRVKQMIDSTTKEAEITSLT 74 (614)
Q Consensus 1 Maese~l-----~ALkkAyadiilntaKEAAaRVm~aERkA~~~~qeL~~~Ke-eaL~~LlRLKq~~Daki~EaE~~sl~ 74 (614)
|+||+++ .-|..++.+ ++.+.|++|+.+++..+-..++...-+ =-=++.+-|.+-=+.--.+|=..-..
T Consensus 22 aEDP~k~l~q~i~em~~~l~~-----~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~ 96 (222)
T PRK10698 22 AEDPQKLVRLMIQEMEDTLVE-----VRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQK 96 (222)
T ss_pred hcCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4677764 223333333 388899999887765432222211100 01112222332222222232222334
Q ss_pred hhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 75 KQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 75 ~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
...+|..|++|+...+..+..|+..|++++..|++++.
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~ 134 (222)
T PRK10698 97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRA 134 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888888888888888888888874
No 2
>PRK00846 hypothetical protein; Provisional
Probab=92.59 E-value=0.67 Score=40.34 Aligned_cols=57 Identities=19% Similarity=0.208 Sum_probs=53.0
Q ss_pred hhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 007188 58 KQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKNNP 114 (614)
Q Consensus 58 Kq~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~~~ 114 (614)
.+.|+++|.+-|+...-|..-|++|-..+...+..|..|+..|+++.+.|+.+..+.
T Consensus 8 ~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s~ 64 (77)
T PRK00846 8 DQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRSTL 64 (77)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 467899999999999999999999999999999999999999999999999998544
No 3
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.80 E-value=0.64 Score=40.32 Aligned_cols=54 Identities=28% Similarity=0.439 Sum_probs=50.5
Q ss_pred hhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 59 QMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 59 q~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
..++++|+|.|++..-|-+-|+||-.+|-|-+-+|..+|+-|+.+-++|..++.
T Consensus 4 ~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~ 57 (72)
T COG2900 4 MELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQP 57 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 467899999999999999999999999999999999999999999999988875
No 4
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=91.43 E-value=8.3 Score=38.02 Aligned_cols=107 Identities=19% Similarity=0.334 Sum_probs=66.9
Q ss_pred CcchHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHH----HhhhhhhcHHHHHHHHHHhhhhhchhhhHHHHhhHH
Q 007188 1 MAESEKMVALKKAYADI--ILNTAREAAARIMASERQALR----FEKDLSNTKDEALRLLVRVKQMIDSTTKEAEITSLT 74 (614)
Q Consensus 1 Maese~l~ALkkAyadi--ilntaKEAAaRVm~aERkA~~----~~qeL~~~KeeaL~~LlRLKq~~Daki~EaE~~sl~ 74 (614)
++||+++ |...+-|| -|..++.+-|++|+.+++..+ ++....--.+. +.+-|++-=|.-..+|=..-..
T Consensus 22 ~EDP~~~--l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~---A~~Al~~G~EdLAr~Al~~k~~ 96 (219)
T TIGR02977 22 AEDPEKM--IRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEK---AELALSKGREDLARAALIEKQK 96 (219)
T ss_pred ccCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHCCCHHHHHHHHHHHHH
Confidence 4677753 44444443 356778889999988654432 22222222222 2333444444444444444556
Q ss_pred hhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 75 KQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 75 ~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
.+..+..|+.|+..++..|..|+..|++....|+.++.
T Consensus 97 ~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~ 134 (219)
T TIGR02977 97 AQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARA 134 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888888888888888888888888888888875
No 5
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=91.20 E-value=0.59 Score=38.97 Aligned_cols=52 Identities=23% Similarity=0.452 Sum_probs=44.6
Q ss_pred hhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 60 MIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 60 ~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
||+.+|.+.|+...-+..-|++|-..+-.-+..|..|+.+|+.+.+.|..+.
T Consensus 1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999999999999999999999887
No 6
>PRK02793 phi X174 lysis protein; Provisional
Probab=90.22 E-value=1.7 Score=36.88 Aligned_cols=54 Identities=22% Similarity=0.338 Sum_probs=50.2
Q ss_pred hchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 007188 61 IDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKNNP 114 (614)
Q Consensus 61 ~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~~~ 114 (614)
|+++|.+-|+...-|..-|++|-..+-+-+..|..|+.+|+++.+.|..+..+.
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~~ 59 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQPSN 59 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 788999999999999999999999999999999999999999999999987655
No 7
>PRK02119 hypothetical protein; Provisional
Probab=89.55 E-value=2.1 Score=36.53 Aligned_cols=55 Identities=22% Similarity=0.385 Sum_probs=50.4
Q ss_pred hhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 007188 60 MIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKNNP 114 (614)
Q Consensus 60 ~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~~~ 114 (614)
.|+.+|.+-|+...-|..-|++|-..+-+-+..|..|+.+|+++.+.|..+..+.
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~~~~ 60 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQPSN 60 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 4789999999999999999999999999999999999999999999999887543
No 8
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=88.75 E-value=20 Score=34.79 Aligned_cols=106 Identities=29% Similarity=0.415 Sum_probs=47.9
Q ss_pred CcchHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHH----HHHhhhhhchhhhHHHHhhHH
Q 007188 1 MAESEKMVALKKAYADII--LNTAREAAARIMASERQALRFEKDLSNTKDEALRL----LVRVKQMIDSTTKEAEITSLT 74 (614)
Q Consensus 1 Maese~l~ALkkAyadii--lntaKEAAaRVm~aERkA~~~~qeL~~~KeeaL~~----LlRLKq~~Daki~EaE~~sl~ 74 (614)
|+||++ -|..++-|+- +.-++.+.++||+.+++..+ ++..+..++-.. .+-|++-=|.-..+|=..-..
T Consensus 21 ~EDP~~--~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~---~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~ 95 (221)
T PF04012_consen 21 AEDPEK--MLEQAIRDMEEQLRKARQALARVMANQKRLER---KLDEAEEEAEKWEKQAELALAAGREDLAREALQRKAD 95 (221)
T ss_pred hcCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456774 4555554443 44566777777776544322 222222111111 111222222222222222233
Q ss_pred hhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 75 KQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 75 ~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
....+..|+.++..+...|..|+..|+.....|+.++
T Consensus 96 ~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k 132 (221)
T PF04012_consen 96 LEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELK 132 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555
No 9
>PRK00295 hypothetical protein; Provisional
Probab=88.67 E-value=2.9 Score=35.16 Aligned_cols=52 Identities=17% Similarity=0.264 Sum_probs=47.8
Q ss_pred hchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 61 IDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 61 ~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
|+++|.+-|+...-|..-|++|-..+-.-+..|..|+..|+++.+.|..+..
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~~ 54 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMVG 54 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6788999999988899999999999999999999999999999999998873
No 10
>PRK04325 hypothetical protein; Provisional
Probab=86.09 E-value=4.6 Score=34.49 Aligned_cols=53 Identities=17% Similarity=0.303 Sum_probs=48.2
Q ss_pred hhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 60 MIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 60 ~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
.|..+|.+-|+...-|..-|++|-..+-+-+..|..|+..|+.+.+.|..+..
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~~ 58 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDANP 58 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46788999999999999999999999999999999999999999999988764
No 11
>PRK04406 hypothetical protein; Provisional
Probab=85.92 E-value=4.5 Score=34.75 Aligned_cols=56 Identities=14% Similarity=0.394 Sum_probs=49.6
Q ss_pred hhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 007188 59 QMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKNNP 114 (614)
Q Consensus 59 q~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~~~ 114 (614)
..|+.+|.+-|+...-|..-|++|-..+-+-+-.|..|+.+|+++.+.|..+..+.
T Consensus 7 ~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~~~~ 62 (75)
T PRK04406 7 EQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMDSSN 62 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 36789999999998889999999999999999999999999999999998876533
No 12
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=84.53 E-value=36 Score=37.26 Aligned_cols=49 Identities=24% Similarity=0.390 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHHHHhhhhhc
Q 007188 10 LKKAYADIILNTAREAAARIMASERQALRFEKDLSNTKDEALRLLVRVKQMID 62 (614)
Q Consensus 10 LkkAyadiilntaKEAAaRVm~aERkA~~~~qeL~~~KeeaL~~LlRLKq~~D 62 (614)
.-+||-|||-+ +--|||.+|.--.+-+-=++.+--.-|+++.||.||..
T Consensus 121 ~~~~~~evlnh----~~qrV~EaE~e~t~aE~~Has~a~~~l~l~~~~R~~ek 169 (426)
T KOG2008|consen 121 FDSAWQEVLNH----ATQRVMEAEQEKTRAELVHASTAARYLALMGRMRQLEK 169 (426)
T ss_pred hHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688888765 44699999875555444444444556777788887653
No 13
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=84.13 E-value=2.2 Score=35.41 Aligned_cols=36 Identities=31% Similarity=0.554 Sum_probs=33.1
Q ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 007188 78 KVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKNN 113 (614)
Q Consensus 78 ki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~~ 113 (614)
||+|||..|.-.+-.|..+|.|+...++.+|++..+
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~en 36 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEEN 36 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999998743
No 14
>PRK09039 hypothetical protein; Validated
Probab=83.13 E-value=9.8 Score=40.27 Aligned_cols=69 Identities=23% Similarity=0.242 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhhhhhcHH---HHHHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHH
Q 007188 31 ASERQALRFEKDLSNTKD---EALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWV 103 (614)
Q Consensus 31 ~aERkA~~~~qeL~~~Ke---eaL~~LlRLKq~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~ 103 (614)
..|.+++.++.+|...|. |+.+.+.+|++-|++- +-+.-.=+.-|+++|++..+++..|.+|+.+|+.+
T Consensus 113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aL----r~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAAL----RRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888888888775 4677788887655442 11112223345555555555555566666666555
No 15
>PRK00736 hypothetical protein; Provisional
Probab=81.23 E-value=10 Score=32.00 Aligned_cols=53 Identities=21% Similarity=0.355 Sum_probs=46.7
Q ss_pred hhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 60 MIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 60 ~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
.++.+|.+.|+...-|..-|++|-..+-.-+..|..|+..|+.+.+.|+.+..
T Consensus 2 ~~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~~ 54 (68)
T PRK00736 2 DAEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLEE 54 (68)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35678999999988888999999999999999999999999999999988764
No 16
>PHA02562 46 endonuclease subunit; Provisional
Probab=78.84 E-value=31 Score=37.27 Aligned_cols=94 Identities=7% Similarity=0.158 Sum_probs=54.1
Q ss_pred HHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhcHHHHH---HHHHHhhhhhchhhhHHHHhhHHhhhhhH
Q 007188 5 EKMVALKKAY-ADIILNTAREAAARIMASERQALRFEKDLSNTKDEAL---RLLVRVKQMIDSTTKEAEITSLTKQRKVD 80 (614)
Q Consensus 5 e~l~ALkkAy-adiilntaKEAAaRVm~aERkA~~~~qeL~~~KeeaL---~~LlRLKq~~Daki~EaE~~sl~~qrki~ 80 (614)
++...|.+.. -++.-.+.+.+-.++-.++.+-..++.++....++.= .++.+++...+ ..|+
T Consensus 151 er~~il~~l~~~~~~~~~~~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~--------------~~i~ 216 (562)
T PHA02562 151 ARRKLVEDLLDISVLSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNG--------------ENIA 216 (562)
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--------------HHHH
Confidence 3434444433 2344455666666666777777777777666554432 23333333332 2366
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 81 ELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 81 ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
++++++.+..+....|..++..++++|..+++
T Consensus 217 ~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~ 248 (562)
T PHA02562 217 RKQNKYDELVEEAKTIKAEIEELTDELLNLVM 248 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66667666666677777777777777766664
No 17
>PRK10884 SH3 domain-containing protein; Provisional
Probab=78.08 E-value=18 Score=36.23 Aligned_cols=78 Identities=12% Similarity=0.157 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHH
Q 007188 23 REAAARIMASERQALRFEKDLSNTKDEALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRW 102 (614)
Q Consensus 23 KEAAaRVm~aERkA~~~~qeL~~~KeeaL~~LlRLKq~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~ 102 (614)
..+..|+=..|+.-+.++++|.++.++ .+....|..-..-.-...|.+|+++..++..-+..++.|++.
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~~~~-----------~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNIDNT-----------WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777776555 222111111111111223444555555555555555555555
Q ss_pred HHHHHHHHh
Q 007188 103 VTDKLEKVK 111 (614)
Q Consensus 103 ~~~eLEk~~ 111 (614)
+..+++.++
T Consensus 158 l~~~~~~~~ 166 (206)
T PRK10884 158 ANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHH
Confidence 554444444
No 18
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=77.31 E-value=7.5 Score=34.33 Aligned_cols=42 Identities=26% Similarity=0.317 Sum_probs=36.3
Q ss_pred hhHHhhhhhHHHHHHHhhhHH-----HHHHHHHHHHHHHHHHHHHhc
Q 007188 71 TSLTKQRKVDELEAQLNEAED-----VITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 71 ~sl~~qrki~ELEaQL~eaed-----~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
.-...|.|+.+||+|..|+|| +|+.++.....+..+|..+++
T Consensus 16 Kiae~Q~rlK~Le~qk~E~EN~EIv~~VR~~~mtp~eL~~~L~~~~~ 62 (83)
T PF14193_consen 16 KIAELQARLKELEAQKTEAENLEIVQMVRSMKMTPEELAAFLRAMKS 62 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 335678899999999999996 688999999999999999985
No 19
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=76.06 E-value=20 Score=30.20 Aligned_cols=57 Identities=26% Similarity=0.402 Sum_probs=35.5
Q ss_pred HHHHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 49 EALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 49 eaL~~LlRLKq~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
.||-.=+|=||.+--.+.-.-...+.- +.+|.+|+.-..+|..|+..++.++|++|.
T Consensus 4 saL~~EirakQ~~~eEL~kvk~~n~~~-------e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 4 SALEAEIRAKQAIQEELTKVKSANLAF-------ESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456666777777766555444444444 445555555577777777777777777763
No 20
>PRK11637 AmiB activator; Provisional
Probab=75.92 E-value=67 Score=34.51 Aligned_cols=37 Identities=16% Similarity=0.439 Sum_probs=20.7
Q ss_pred HhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 007188 74 TKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKV 110 (614)
Q Consensus 74 ~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (614)
.++..+++|++++.+.+..+..|+.+.+++...|+++
T Consensus 216 e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l 252 (428)
T PRK11637 216 ERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARA 252 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455566555555555666666655555555544
No 21
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=75.71 E-value=95 Score=31.39 Aligned_cols=104 Identities=18% Similarity=0.329 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHhhHHHH----HHHHHHHHHHHHHHhhhhhhcHHHHHHHHHHhhhhhchhhhHHHHhhHHhhhhhHH
Q 007188 6 KMVALKKAYADIILNTAREA----AARIMASERQALRFEKDLSNTKDEALRLLVRVKQMIDSTTKEAEITSLTKQRKVDE 81 (614)
Q Consensus 6 ~l~ALkkAyadiilntaKEA----AaRVm~aERkA~~~~qeL~~~KeeaL~~LlRLKq~~Daki~EaE~~sl~~qrki~E 81 (614)
.|.-++.-|..++-..-.++ ..+|-.....+......+..+|+|...+-..+ +.+...+.......-.=.+.|.+
T Consensus 170 ~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~-~~l~~el~~l~~~~~~Le~~l~~ 248 (312)
T PF00038_consen 170 ALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQI-QSLQAELESLRAKNASLERQLRE 248 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhh-hHhhhhhhccccchhhhhhhHHH
Confidence 34456667766654443332 23455555566667777888887754333322 22222222222111122233444
Q ss_pred HHHHH----hhhHHHHHHHHHHHHHHHHHHHHH
Q 007188 82 LEAQL----NEAEDVITDLRSELRWVTDKLEKV 110 (614)
Q Consensus 82 LEaQL----~eaed~v~~Lr~ELr~~~~eLEk~ 110 (614)
|+.++ ...+..|..|..||..++.+++..
T Consensus 249 le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~ 281 (312)
T PF00038_consen 249 LEQRLDEEREEYQAEIAELEEELAELREEMARQ 281 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 43332 234566777777777777766543
No 22
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=74.26 E-value=33 Score=32.67 Aligned_cols=95 Identities=25% Similarity=0.208 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHHHHhhhhhchhhhHHHHhhHHhhhhhHH
Q 007188 8 VALKKAYADIIL------NTAREAAARIMASERQALRFEKDLSNTKDEALRLLVRVKQMIDSTTKEAEITSLTKQRKVDE 81 (614)
Q Consensus 8 ~ALkkAyadiil------ntaKEAAaRVm~aERkA~~~~qeL~~~KeeaL~~LlRLKq~~Daki~EaE~~sl~~qrki~E 81 (614)
++||-||+..=. +-+--||-..+|+|=+...--..++.-+.-... ..-.++.+.+.|--...-....-+++
T Consensus 22 SalKaAY~qLQ~Ah~PyDpd~I~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~---~~~~~l~a~~~e~qsli~~yE~~~~k 98 (131)
T PF04859_consen 22 SALKAAYAQLQQAHSPYDPDKIQAADEAVVSELRRLSELKRRYRKKQSDPS---PQVARLAAEIQEQQSLIKTYEIVVKK 98 (131)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC---ccccccccchHHHHHHHHHHHHHHHH
Confidence 899999988533 224468888999986655433333222221111 22223444443222222223334566
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHH
Q 007188 82 LEAQLNEAEDVITDLRSELRWVTD 105 (614)
Q Consensus 82 LEaQL~eaed~v~~Lr~ELr~~~~ 105 (614)
||+|+..=..-|..||.+|.....
T Consensus 99 Le~e~~~Kdsei~~Lr~~L~~~~~ 122 (131)
T PF04859_consen 99 LEAELRAKDSEIDRLREKLDELNR 122 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777766666666667666655443
No 23
>PRK00106 hypothetical protein; Provisional
Probab=72.57 E-value=87 Score=35.80 Aligned_cols=62 Identities=27% Similarity=0.284 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHhh-hhhhcHHHHHHHHHHhhhhhchhhhHHH
Q 007188 7 MVALKKAYADIILNTAREAAARIM-ASERQALRFEK-DLSNTKDEALRLLVRVKQMIDSTTKEAE 69 (614)
Q Consensus 7 l~ALkkAyadiilntaKEAAaRVm-~aERkA~~~~q-eL~~~KeeaL~~LlRLKq~~Daki~EaE 69 (614)
|..-|.|.-=.+|. |++.|..|+ -|+++|..+.. -...||++...+.+..++-+..+-.|.|
T Consensus 26 ~~~~~~~~~~~~~~-A~~~A~~IleeAe~eAe~I~keA~~EAke~~ke~~lEaeeEi~~~R~ElE 89 (535)
T PRK00106 26 MKSAKEAAELTLLN-AEQEAVNLRGKAERDAEHIKKTAKRESKALKKELLLEAKEEARKYREEIE 89 (535)
T ss_pred HhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334443333444 334444444 46666654432 2234455556666666555444444443
No 24
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=72.16 E-value=1.2e+02 Score=31.01 Aligned_cols=106 Identities=26% Similarity=0.334 Sum_probs=52.6
Q ss_pred CcchHHHHHHHHHHHH--HHHhhHHHHHHHHHHH----HHHHHHHhhhhhhcHHHHHHHHHHhhhhhchhhhHHHHhhHH
Q 007188 1 MAESEKMVALKKAYAD--IILNTAREAAARIMAS----ERQALRFEKDLSNTKDEALRLLVRVKQMIDSTTKEAEITSLT 74 (614)
Q Consensus 1 Maese~l~ALkkAyad--iilntaKEAAaRVm~a----ERkA~~~~qeL~~~KeeaL~~LlRLKq~~Daki~EaE~~sl~ 74 (614)
|+||+++ |..++-| -=|.-++.+.|.||+. ||+...++....--...|..+|-.=..-+-.+.. .+++++
T Consensus 22 ~EDp~~~--l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al-~~~~~l- 97 (225)
T COG1842 22 AEDPEKM--LEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREAL-EEKQSL- 97 (225)
T ss_pred hcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHH-
Confidence 5677764 2222222 2244466777777764 4555555544444444444433221111111111 122222
Q ss_pred hhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 75 KQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 75 ~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
...+..+++++..+.+.+..|+..+.++...+++++
T Consensus 98 -e~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~ 133 (225)
T COG1842 98 -EDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELR 133 (225)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234556666666777777777777666666666665
No 25
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=71.85 E-value=1e+02 Score=30.81 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Q 007188 89 AEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 89 aed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
|+.-|..|..++..+.++|+..+
T Consensus 195 aE~~v~~Le~~id~le~eL~~~k 217 (237)
T PF00261_consen 195 AERRVKKLEKEIDRLEDELEKEK 217 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555444
No 26
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=71.30 E-value=46 Score=33.90 Aligned_cols=30 Identities=30% Similarity=0.366 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcHHHHH
Q 007188 22 AREAAARIMASERQALRFEKDLSNTKDEAL 51 (614)
Q Consensus 22 aKEAAaRVm~aERkA~~~~qeL~~~KeeaL 51 (614)
++.|-..+..+|++|..|+..+--+.++|.
T Consensus 21 ~~~a~~~L~e~e~~a~~Leek~k~aeeea~ 50 (246)
T PF00769_consen 21 MRRAQEALEESEETAEELEEKLKQAEEEAE 50 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555667778888888777777777664
No 27
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=70.77 E-value=1.1e+02 Score=29.83 Aligned_cols=101 Identities=18% Similarity=0.276 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhh----cHHHHHHHHHHhhhhhchhhhHHHHhhHHhhhhhHHH
Q 007188 7 MVALKKAYADIILNTAREAAARIMASERQALRFEKDLSN----TKDEALRLLVRVKQMIDSTTKEAEITSLTKQRKVDEL 82 (614)
Q Consensus 7 l~ALkkAyadiilntaKEAAaRVm~aERkA~~~~qeL~~----~KeeaL~~LlRLKq~~Daki~EaE~~sl~~qrki~EL 82 (614)
+..+++++|.+|-+ .+....++-..++.+..++..... -.|+.-+..|.=|+-++.++...+-.--.....++.|
T Consensus 39 l~~a~~~~a~~~a~-~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l 117 (221)
T PF04012_consen 39 LRKARQALARVMAN-QKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKL 117 (221)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777654 344555666666666666554433 3566666777777777777777776666667777888
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHH
Q 007188 83 EAQLNEAEDVITDLRSELRWVTDKLE 108 (614)
Q Consensus 83 EaQL~eaed~v~~Lr~ELr~~~~eLE 108 (614)
..+|..++.-+.+++.+...+.....
T Consensus 118 ~~~l~~l~~kl~e~k~k~~~l~ar~~ 143 (221)
T PF04012_consen 118 KEQLEELEAKLEELKSKREELKAREN 143 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888777777666555443
No 28
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=70.67 E-value=96 Score=32.48 Aligned_cols=48 Identities=19% Similarity=0.305 Sum_probs=34.5
Q ss_pred hhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 64 TTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 64 ki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
.+.+.+..--..++++++|++||...+..|.++..+......++..+.
T Consensus 217 eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 217 ELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444556678888888888888888888887777777766655
No 29
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=69.93 E-value=1.3e+02 Score=31.95 Aligned_cols=50 Identities=24% Similarity=0.334 Sum_probs=37.2
Q ss_pred hhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 63 STTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 63 aki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
.+|.+....-...++++++++.||.+..+.|.++..+....+.++..+++
T Consensus 211 ~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 211 EKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556677889999999999998888887777777776666664
No 30
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=69.70 E-value=9 Score=41.03 Aligned_cols=48 Identities=27% Similarity=0.340 Sum_probs=44.8
Q ss_pred hhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHH
Q 007188 57 VKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVT 104 (614)
Q Consensus 57 LKq~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~ 104 (614)
|++.+..+|.|+|.+-.....-..-||||-.|.-..|+-||+||+-++
T Consensus 18 ~~~y~~~ki~~~~~~v~~kt~nlrrleaqrneln~kvr~lreel~~lq 65 (404)
T KOG0728|consen 18 LRQYYLQKIEELQLQVAEKTQNLRRLEAQRNELNAKVRLLREELQLLQ 65 (404)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 789999999999999988889999999999999999999999999765
No 31
>PRK12704 phosphodiesterase; Provisional
Probab=68.24 E-value=1.2e+02 Score=34.38 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=15.8
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 79 VDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 79 i~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
++..|.+|..-+..+..+..+|.....+++++.
T Consensus 105 Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~ 137 (520)
T PRK12704 105 LEKREEELEKKEKELEQKQQELEKKEEELEELI 137 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444445555555555555544444
No 32
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=67.33 E-value=1.2e+02 Score=31.97 Aligned_cols=21 Identities=19% Similarity=0.514 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 007188 92 VITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 92 ~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
.|..|+.+|..+..+|..++.
T Consensus 255 ~i~~l~~~l~~le~~l~~l~~ 275 (444)
T TIGR03017 255 IIQNLKTDIARAESKLAELSQ 275 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888764
No 33
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=67.05 E-value=1.4e+02 Score=29.61 Aligned_cols=71 Identities=15% Similarity=0.302 Sum_probs=54.5
Q ss_pred hhhhcHHHHHHHHHHhhhhhchhhhHHHHhhHHh----hhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 42 DLSNTKDEALRLLVRVKQMIDSTTKEAEITSLTK----QRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 42 eL~~~KeeaL~~LlRLKq~~Daki~EaE~~sl~~----qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
.+...+...+..|-+.|.-++..-.+.|...+.. .+.++-++++|..++..|...+.+.+....+|...+.
T Consensus 111 k~~k~~~~~~~~l~KaK~~Y~~~c~~~e~~~~~~~~~~~ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~ 185 (236)
T cd07651 111 KLLKKKQDQEKYLEKAREKYEADCSKINSYTLQSQLTWGKELEKNNAKLNKAQSSINSSRRDYQNAVKALRELNE 185 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677778888888888887776666433321 2788999999999999999999999888888887763
No 34
>PRK11637 AmiB activator; Provisional
Probab=66.83 E-value=70 Score=34.36 Aligned_cols=49 Identities=16% Similarity=0.188 Sum_probs=21.5
Q ss_pred chhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 007188 62 DSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKV 110 (614)
Q Consensus 62 Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (614)
+.+|.+++...-..+++|+++++++...+.-|.+++.+|...++.|.+.
T Consensus 81 ~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~r 129 (428)
T PRK11637 81 EEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQ 129 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444444444444444444444444443
No 35
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=66.64 E-value=16 Score=38.92 Aligned_cols=56 Identities=23% Similarity=0.391 Sum_probs=44.9
Q ss_pred hhchhhhHHHHhhHHhhhhhHHHHHHHh--------------hhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 007188 60 MIDSTTKEAEITSLTKQRKVDELEAQLN--------------EAEDVITDLRSELRWVTDKLEKVKNNPL 115 (614)
Q Consensus 60 ~~Daki~EaE~~sl~~qrki~ELEaQL~--------------eaed~v~~Lr~ELr~~~~eLEk~~~~~~ 115 (614)
++-+|++|.|-+.-..-..|+||-.||. |||=.+.+-|.|++.++...|.|+++-.
T Consensus 72 HLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ 141 (305)
T PF15290_consen 72 HLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLA 141 (305)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3457778877776555667888888885 6788889999999999999999998653
No 36
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=65.04 E-value=1.1e+02 Score=35.98 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhcH
Q 007188 4 SEKMVALKKAYADIILNTAREAAARIMASERQALRFEKDLSNTK 47 (614)
Q Consensus 4 se~l~ALkkAyadiilntaKEAAaRVm~aERkA~~~~qeL~~~K 47 (614)
-+-+.+|.|=++|-. .++-++-.=+.+||||..-+++ .+++
T Consensus 487 Kq~l~~LEkrL~eE~--~~R~~lEkQL~eErk~r~~ee~-~aar 527 (697)
T PF09726_consen 487 KQSLQQLEKRLAEER--RQRASLEKQLQEERKARKEEEE-KAAR 527 (697)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHH-hhhh
Confidence 344567777766632 3444455567788888777665 3444
No 37
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=64.51 E-value=1.2e+02 Score=28.13 Aligned_cols=29 Identities=34% Similarity=0.537 Sum_probs=19.0
Q ss_pred hhhhHHHHHHHhhhHHHHHHHHHHHHHHH
Q 007188 76 QRKVDELEAQLNEAEDVITDLRSELRWVT 104 (614)
Q Consensus 76 qrki~ELEaQL~eaed~v~~Lr~ELr~~~ 104 (614)
..||++|+.++.+++.-+..++.++....
T Consensus 144 ~~ki~~l~~~i~~~e~~~~~~~~~~~~i~ 172 (218)
T cd07596 144 PAKVEELEEELEEAESALEEARKRYEEIS 172 (218)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777777777777776666655554443
No 38
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=64.17 E-value=50 Score=35.78 Aligned_cols=79 Identities=27% Similarity=0.355 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHhh-hhhhcHHHHHHHHHHhhhhhchh-----hhHHHHhhHHhhhhhHHHHHHHhhhHHHHHH
Q 007188 22 AREAAARIMASERQALRFEK-DLSNTKDEALRLLVRVKQMIDST-----TKEAEITSLTKQRKVDELEAQLNEAEDVITD 95 (614)
Q Consensus 22 aKEAAaRVm~aERkA~~~~q-eL~~~KeeaL~~LlRLKq~~Dak-----i~EaE~~sl~~qrki~ELEaQL~eaed~v~~ 95 (614)
-+||--|--+-||+-...++ +-+.-+++|+++|-++-.-++++ -+|.|.. -.+-+||+|||+|.-+-||.+.-
T Consensus 347 ~eeaeerqraeekeq~eaee~~ra~kr~egvkllkf~fekieareerrkqkeeekl-k~e~qkikeleek~~eeedal~~ 425 (445)
T KOG2891|consen 347 EEEAEERQRAEEKEQKEAEELERARKREEGVKLLKFEFEKIEAREERRKQKEEEKL-KAEEQKIKELEEKIKEEEDALLL 425 (445)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666655544 33445789999988876555553 2344433 45667899999999999987654
Q ss_pred HHHHHH
Q 007188 96 LRSELR 101 (614)
Q Consensus 96 Lr~ELr 101 (614)
-..-|+
T Consensus 426 all~~q 431 (445)
T KOG2891|consen 426 ALLNLQ 431 (445)
T ss_pred HHHhhH
Confidence 433333
No 39
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=64.02 E-value=55 Score=39.61 Aligned_cols=46 Identities=20% Similarity=0.168 Sum_probs=27.3
Q ss_pred hHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 66 KEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 66 ~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
++.+.+-..-|.+..+||-|++..||+|+.++..|++...|||.++
T Consensus 102 k~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~ 147 (1265)
T KOG0976|consen 102 KHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLN 147 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3334444444455556666666666666666666666666666554
No 40
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=63.32 E-value=1.8e+02 Score=33.43 Aligned_cols=18 Identities=17% Similarity=0.215 Sum_probs=10.5
Q ss_pred chHHHHHHHHHHHHHHHh
Q 007188 3 ESEKMVALKKAYADIILN 20 (614)
Q Consensus 3 ese~l~ALkkAyadiiln 20 (614)
|++....+-.++|+..+.
T Consensus 165 dP~~Aa~iaN~la~~Y~~ 182 (754)
T TIGR01005 165 DPKLAAAIPDAIAAAYIA 182 (754)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 566665566666665553
No 41
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=62.05 E-value=1.8e+02 Score=29.21 Aligned_cols=98 Identities=17% Similarity=0.247 Sum_probs=66.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHH---HHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHH
Q 007188 18 ILNTAREAAARIMASERQALRFEKDLSNTKDEALRLL---VRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVIT 94 (614)
Q Consensus 18 ilntaKEAAaRVm~aERkA~~~~qeL~~~KeeaL~~L---lRLKq~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~ 94 (614)
-++.+.+.......++.+...-..++..-+++-++-+ .+=...+...+...+...-.++.+|++|+.|+.+.+.+-.
T Consensus 22 ~~~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~ 101 (251)
T PF11932_consen 22 TLDQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQ 101 (251)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555554444333 3333455666777777778889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCC
Q 007188 95 DLRSELRWVTDKLEKVKNNPL 115 (614)
Q Consensus 95 ~Lr~ELr~~~~eLEk~~~~~~ 115 (614)
.|.-=|.+.-+.|+..-..-+
T Consensus 102 ~l~p~m~~m~~~L~~~v~~d~ 122 (251)
T PF11932_consen 102 ELVPLMEQMIDELEQFVELDL 122 (251)
T ss_pred HHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999988554344
No 42
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=60.17 E-value=29 Score=39.52 Aligned_cols=62 Identities=18% Similarity=0.232 Sum_probs=38.0
Q ss_pred HHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 007188 52 RLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKNN 113 (614)
Q Consensus 52 ~~LlRLKq~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~~ 113 (614)
.=|++.+|++|+|..=-......=+++.+..|..+.-.++-+..+...+++++|||+-++.|
T Consensus 423 ~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~N 484 (518)
T PF10212_consen 423 EELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRN 484 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44666666666666655555555555666666665555566666666666666666666643
No 43
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=59.50 E-value=2.3e+02 Score=31.91 Aligned_cols=46 Identities=20% Similarity=0.281 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHH------HhhHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHH
Q 007188 7 MVALKKAYADII------LNTAREAAARIMASERQALRFEKDLSNTKDEALR 52 (614)
Q Consensus 7 l~ALkkAyadii------lntaKEAAaRVm~aERkA~~~~qeL~~~KeeaL~ 52 (614)
|.-|++=|+..+ +.-|.+|..-.-..++++-.|..||..+|+.-..
T Consensus 139 L~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~ 190 (522)
T PF05701_consen 139 LEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLES 190 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555565544 5566677777778888999999998888876443
No 44
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=59.43 E-value=5 Score=36.32 Aligned_cols=78 Identities=22% Similarity=0.353 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhc----HHHHHHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHH
Q 007188 25 AAARIMASERQALRFEKDLSNT----KDEALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSEL 100 (614)
Q Consensus 25 AAaRVm~aERkA~~~~qeL~~~----KeeaL~~LlRLKq~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~EL 100 (614)
..++...+|+.-..+++||... =+||=.|. .+|......=+.|...|+.||.+++.+|..|+.+|
T Consensus 6 e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MV-----------a~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL 74 (100)
T PF06428_consen 6 ERERREEAEQEKEQIESELEELTASLFEEANKMV-----------ADARRERAALEEKNEQLEKQLKEKEALLESLQAQL 74 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777778888887532 25565543 55555556666788999999999999999999999
Q ss_pred HHHHHHHHHHhcC
Q 007188 101 RWVTDKLEKVKNN 113 (614)
Q Consensus 101 r~~~~eLEk~~~~ 113 (614)
+.+...++.+...
T Consensus 75 ~~LK~v~~~~~~~ 87 (100)
T PF06428_consen 75 KELKTVMESMESE 87 (100)
T ss_dssp SHHHHCTTT----
T ss_pred HHHHHHHHHcccc
Confidence 9999988887653
No 45
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=59.02 E-value=2.2e+02 Score=32.23 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=9.8
Q ss_pred HHhhhhhcCCCCCCC
Q 007188 213 RALESNLLNGKLPQL 227 (614)
Q Consensus 213 rAle~nl~~g~l~~s 227 (614)
+|||.-+.+|.+-|.
T Consensus 262 ~~l~~li~dgrihp~ 276 (514)
T TIGR03319 262 MALEKLIQDGRIHPA 276 (514)
T ss_pred HHHHHHHHcCCCCHH
Confidence 467777777775543
No 46
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=58.22 E-value=55 Score=31.78 Aligned_cols=61 Identities=18% Similarity=0.312 Sum_probs=44.4
Q ss_pred HHHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 50 ALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 50 aL~~LlRLKq~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
++..|+-.-.-+-.-+.+++.- ..-+.+|+.|++++.+....|.++-.+|..++.+|..+-
T Consensus 3 ~~~~L~~~d~~L~~~L~~l~~h-q~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 3 LAEDLIEADDELSSALEELQEH-QENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444555444 344678999999999999999999999999999999886
No 47
>PRK00106 hypothetical protein; Provisional
Probab=57.98 E-value=2.5e+02 Score=32.24 Aligned_cols=15 Identities=27% Similarity=0.406 Sum_probs=9.5
Q ss_pred HHhhhhhcCCCCCCC
Q 007188 213 RALESNLLNGKLPQL 227 (614)
Q Consensus 213 rAle~nl~~g~l~~s 227 (614)
+|||.-+.||.+-|.
T Consensus 283 ~~le~Li~dgrIhp~ 297 (535)
T PRK00106 283 MTLESLIKDGRIHPA 297 (535)
T ss_pred HHHHHHHHcCCcCHH
Confidence 467777777775443
No 48
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=57.98 E-value=2.1e+02 Score=28.63 Aligned_cols=103 Identities=15% Similarity=0.229 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH------Hhhh--------------hhhcHHHHHHHHHHhhhhhchhhhHH
Q 007188 9 ALKKAYADIILNTAREAAARIMASERQALR------FEKD--------------LSNTKDEALRLLVRVKQMIDSTTKEA 68 (614)
Q Consensus 9 ALkkAyadiilntaKEAAaRVm~aERkA~~------~~qe--------------L~~~KeeaL~~LlRLKq~~Daki~Ea 68 (614)
.|+.|+-.|+..|...|..+...|++=-.. |..+ +...+...+..|.+.|.-++..-.|+
T Consensus 57 sl~~aw~~i~~e~e~~a~~H~~la~~L~~~v~~l~~~~~~~~~~~K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~ 136 (239)
T cd07647 57 TLKSSWDSLRKETENVANAHIQLAQSLREEAEKLEEFREKQKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREK 136 (239)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788888888888887777776643221 1111 12223344556666677777777777
Q ss_pred HHhh--------HHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 69 EITS--------LTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 69 E~~s--------l~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
|.+. ...++.++-++.+|..++..+..-+.+.+..-..|+.++
T Consensus 137 e~a~~~~~~~~~~~~~ke~eK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~ 187 (239)
T cd07647 137 DKAEQAYEKSSSGAQPKEAEKLKKKAAQCKTSAEEADSAYKSSIGCLEDAR 187 (239)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7532 223466788888988888888777777777777776665
No 49
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=57.87 E-value=76 Score=34.21 Aligned_cols=44 Identities=14% Similarity=0.190 Sum_probs=23.4
Q ss_pred chHHHHHHHHHHHHHHHhhHH-----HHHHHHHHHHHHHHHHhhhhhhc
Q 007188 3 ESEKMVALKKAYADIILNTAR-----EAAARIMASERQALRFEKDLSNT 46 (614)
Q Consensus 3 ese~l~ALkkAyadiilntaK-----EAAaRVm~aERkA~~~~qeL~~~ 46 (614)
|++....+=+|++++.++.-. ++..-+---+.....++++|..+
T Consensus 132 dP~~Aa~i~n~l~~~yi~~~~~~~~~~~~~~~~fl~~ql~~~~~~L~~a 180 (498)
T TIGR03007 132 DPELAKDVVQTLLTIFVEETLGSKRQDSDSAQRFIDEQIKTYEKKLEAA 180 (498)
T ss_pred CHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777776655422 22222222244445566666555
No 50
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=57.84 E-value=1.1e+02 Score=33.04 Aligned_cols=62 Identities=21% Similarity=0.324 Sum_probs=39.7
Q ss_pred HHHHHhhhhhhcHHHHHHHHHHhhhhhchhhhHHHHhhHH--------hhhhhHHHHHHHhhhHHHHHHHH
Q 007188 35 QALRFEKDLSNTKDEALRLLVRVKQMIDSTTKEAEITSLT--------KQRKVDELEAQLNEAEDVITDLR 97 (614)
Q Consensus 35 kA~~~~qeL~~~KeeaL~~LlRLKq~~Daki~EaE~~sl~--------~qrki~ELEaQL~eaed~v~~Lr 97 (614)
+...++++-...++++-.++-+|+..+++| .+.|...+. ...||.+|+.+|..++....+++
T Consensus 145 ~~~~L~~enerL~~e~~~~~~qlE~~v~~K-~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~~~~~~~~ 214 (342)
T PF06632_consen 145 ENEHLQKENERLESEANKLLKQLEKFVNAK-EEHEEDLYAKFVLVLNEKKAKIRELQRLLASAKEEEKSPK 214 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccccchh
Confidence 334455555666777788888999998888 556655443 34567777777666665444333
No 51
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=57.18 E-value=66 Score=34.71 Aligned_cols=82 Identities=26% Similarity=0.322 Sum_probs=51.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHHHHhhhhhchhhhHHHHhhH--HhhhhhHHHHHHHhh
Q 007188 11 KKAYADIILNTAREAAARIMASERQALRFEKDLSNTKDEALRLLVRVKQMIDSTTKEAEITSL--TKQRKVDELEAQLNE 88 (614)
Q Consensus 11 kkAyadiilntaKEAAaRVm~aERkA~~~~qeL~~~KeeaL~~LlRLKq~~Daki~EaE~~sl--~~qrki~ELEaQL~e 88 (614)
=+++-|+-++++-++...+|.+|--++.+-+ -+.++++|++-++-. .|.=+.+| --++.|+|+-+-|++
T Consensus 230 ~re~~d~W~~~ae~~~~e~~~S~efak~~G~--------lvna~m~lr~~~qe~-~e~~L~~LnlPTRsElDe~~krL~E 300 (320)
T TIGR01834 230 AKALYDLWVIAAEEAYAEVFASEENAKVHGK--------FINALMRLRIQQQEI-VEALLKMLNLPTRSELDEAHQRIQQ 300 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH--------HHHHHHHHHHHHHHH-HHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 3577799999999999999999987776532 344566676666543 33333333 345666666666555
Q ss_pred hHHHHHHHHHHHH
Q 007188 89 AEDVITDLRSELR 101 (614)
Q Consensus 89 aed~v~~Lr~ELr 101 (614)
.+.-|++|+.||+
T Consensus 301 LrR~vr~L~k~l~ 313 (320)
T TIGR01834 301 LRREVKSLKKRLG 313 (320)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 52
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=57.02 E-value=1.1e+02 Score=30.07 Aligned_cols=13 Identities=31% Similarity=0.171 Sum_probs=6.3
Q ss_pred hhhcCCCCCCCCC
Q 007188 217 SNLLNGKLPQLGN 229 (614)
Q Consensus 217 ~nl~~g~l~~sg~ 229 (614)
+..|+-.||..-.
T Consensus 212 s~yL~v~Lpy~i~ 224 (302)
T PF10186_consen 212 SRYLGVPLPYPIT 224 (302)
T ss_pred HHHhCCCCCCCcc
Confidence 3445555555443
No 53
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=55.84 E-value=68 Score=41.70 Aligned_cols=81 Identities=21% Similarity=0.344 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhhhhhhcHHHHHHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 007188 30 MASERQALRFEKDLSNTKDEALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEK 109 (614)
Q Consensus 30 m~aERkA~~~~qeL~~~KeeaL~~LlRLKq~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk 109 (614)
|--|+.-..|+.+| .+-.+.+..+-..++-++....-.|.....-+.+++++.+.+..++-.|.+|...+..+..+||.
T Consensus 1037 ~e~Ek~~rkle~el-~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~ 1115 (1930)
T KOG0161|consen 1037 MELEKAKRKLEGEL-KDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEA 1115 (1930)
T ss_pred HHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777888888 55566677788888888888888888888888888888888888888887777777777777766
Q ss_pred Hh
Q 007188 110 VK 111 (614)
Q Consensus 110 ~~ 111 (614)
-|
T Consensus 1116 er 1117 (1930)
T KOG0161|consen 1116 ER 1117 (1930)
T ss_pred HH
Confidence 55
No 54
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=55.53 E-value=43 Score=27.04 Aligned_cols=39 Identities=23% Similarity=0.428 Sum_probs=30.1
Q ss_pred HhhhhhHHHHHHHhhhHHHHHHHHHHHHHH---HHHHHHHhc
Q 007188 74 TKQRKVDELEAQLNEAEDVITDLRSELRWV---TDKLEKVKN 112 (614)
Q Consensus 74 ~~qrki~ELEaQL~eaed~v~~Lr~ELr~~---~~eLEk~~~ 112 (614)
..++.|.+|+.++...+.-..+|+.|+.++ .+.+|++..
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 345667888888888888888888888888 567777765
No 55
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=54.51 E-value=1.9e+02 Score=29.01 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhcHHH
Q 007188 21 TAREAAARIMASERQALRFEKDLSNTKDE 49 (614)
Q Consensus 21 taKEAAaRVm~aERkA~~~~qeL~~~Kee 49 (614)
.+.+|-.|.--++||-..++++|..+.+-
T Consensus 107 ~~ee~e~k~~E~~rkl~~~E~~Le~aEeR 135 (237)
T PF00261_consen 107 RAEEAERKYEEVERKLKVLEQELERAEER 135 (237)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555554443
No 56
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=53.85 E-value=37 Score=28.42 Aligned_cols=35 Identities=23% Similarity=0.446 Sum_probs=23.8
Q ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 77 RKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 77 rki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
.+|.+||.+|--.+++|..|-..+-+-+.+++.++
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~ 38 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQ 38 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888887777777777666555555555544
No 57
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=53.74 E-value=2.5e+02 Score=29.44 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=7.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHH
Q 007188 82 LEAQLNEAEDVITDLRSELRW 102 (614)
Q Consensus 82 LEaQL~eaed~v~~Lr~ELr~ 102 (614)
+++++.+...-+..|+.|++.
T Consensus 242 l~~~i~~~~~~k~~l~~eI~e 262 (325)
T PF08317_consen 242 LEEKIEELEEQKQELLAEIAE 262 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 58
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=53.28 E-value=89 Score=28.94 Aligned_cols=69 Identities=20% Similarity=0.367 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHHHHhhhhhchhhhHHHHhhHHhhhh
Q 007188 4 SEKMVALKKAYADIILN-----TAREAAARIMASERQALRFEKDLSNTKDEALRLLVRVKQMIDSTTKEAEITSLTKQRK 78 (614)
Q Consensus 4 se~l~ALkkAyadiiln-----taKEAAaRVm~aERkA~~~~qeL~~~KeeaL~~LlRLKq~~Daki~EaE~~sl~~qrk 78 (614)
..+...|.+|...|--| +-++.-..|.-.+++....++||..|++.| ..+.. ...|+|
T Consensus 42 ~~rv~GLe~AL~~v~~~Ctd~~l~~e~q~ki~~~~~kV~ere~eL~eA~~~G----------------~~~KI-~K~~~K 104 (115)
T PF06476_consen 42 QHRVAGLEKALEEVKAHCTDEGLKAERQQKIAEKQQKVAEREAELKEAQAKG----------------DSDKI-AKRQKK 104 (115)
T ss_pred HHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------------CHHHH-HHHHHH
Confidence 45567888888888655 456777888888889999999988887763 22222 344566
Q ss_pred hHHHHHHHhhh
Q 007188 79 VDELEAQLNEA 89 (614)
Q Consensus 79 i~ELEaQL~ea 89 (614)
+.|-.+.|.+|
T Consensus 105 L~ea~~eL~~A 115 (115)
T PF06476_consen 105 LAEAKAELKEA 115 (115)
T ss_pred HHHHHHHHhhC
Confidence 66666666554
No 59
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=52.21 E-value=59 Score=30.65 Aligned_cols=54 Identities=30% Similarity=0.418 Sum_probs=32.1
Q ss_pred chhhhHHHHhhHHhhhhhHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 007188 62 DSTTKEAEITSLTKQRKVDELEAQLN---------EAEDVITDLRSELRWVTDKLEKVKNNPL 115 (614)
Q Consensus 62 Daki~EaE~~sl~~qrki~ELEaQL~---------eaed~v~~Lr~ELr~~~~eLEk~~~~~~ 115 (614)
|..|.+..-+.-.....+..|+++|. ++...|..|+.|+....+.|+.++.+..
T Consensus 78 d~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~ 140 (169)
T PF07106_consen 78 DAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSK 140 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 33444443333333444445555443 4456688888888888888888886443
No 60
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=52.01 E-value=40 Score=30.53 Aligned_cols=62 Identities=23% Similarity=0.349 Sum_probs=39.5
Q ss_pred HHHHHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 48 DEALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 48 eeaL~~LlRLKq~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
+..+.-|+||-|.+=-=+-.- -..|. ..+..|++++..++..+..|+.++++..+++..++.
T Consensus 54 dp~~~klfrLaQl~ieYLl~~-q~~L~--~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~ 115 (118)
T PF13815_consen 54 DPNFLKLFRLAQLSIEYLLHC-QEYLS--SQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKK 115 (118)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777776542111100 01122 227788888888888888888888888888888764
No 61
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=51.76 E-value=2.5e+02 Score=35.19 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcHHHHH
Q 007188 24 EAAARIMASERQALRFEKDLSNTKDEAL 51 (614)
Q Consensus 24 EAAaRVm~aERkA~~~~qeL~~~KeeaL 51 (614)
.|+.+.-.+.+....+++++..+.+++.
T Consensus 872 ~A~~~~~~a~~~le~ae~~l~~~~~e~~ 899 (1353)
T TIGR02680 872 HAATRAAEQRARAARAESDAREAAEDAA 899 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555554444443
No 62
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=51.71 E-value=1.7e+02 Score=32.36 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=27.5
Q ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 77 RKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 77 rki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
.++.+|.+++.+++.-+++|+.+|.+++.+|..+..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 138 SEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 455677777777777788888888888888877765
No 63
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=51.19 E-value=1.7e+02 Score=30.45 Aligned_cols=50 Identities=10% Similarity=0.171 Sum_probs=22.2
Q ss_pred chHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHHHHh
Q 007188 3 ESEKMVALKKAY---ADIILNTAREAAARIMASERQALRFEKDLSNTKDEALRLLVRV 57 (614)
Q Consensus 3 ese~l~ALkkAy---adiilntaKEAAaRVm~aERkA~~~~qeL~~~KeeaL~~LlRL 57 (614)
|++....+-+++ ++-.+|.-...+ +++.-..++++|..++++--.+--+|
T Consensus 141 dP~~A~~ian~l~~~~~~~i~~~~~~~-----~~~a~~fl~~ql~~~~~~l~~ae~~l 193 (362)
T TIGR01010 141 DAEEAQKINQRLLKEGERLINRLNERA-----RKDTIAFAENEVKEAEQRLNATKAEL 193 (362)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666 444444322211 12222344555555554433333333
No 64
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=50.14 E-value=1.3e+02 Score=37.94 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=18.5
Q ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 78 KVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 78 ki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
++++||-...+-|-.+-++..||-.+..+||.+.
T Consensus 1711 ~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl 1744 (1758)
T KOG0994|consen 1711 RLKDLELEYLRNEQALEDKAAELAGLEKRVESVL 1744 (1758)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHH
Confidence 3445555555555555555555555555555554
No 65
>PRK04406 hypothetical protein; Provisional
Probab=49.98 E-value=54 Score=28.32 Aligned_cols=37 Identities=24% Similarity=0.357 Sum_probs=28.2
Q ss_pred hhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 75 KQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 75 ~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
-..||.+||.+|--.||+|.+|-..+-+-+.+++.++
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~ 45 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQ 45 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468999999999999888888776666665555555
No 66
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=49.96 E-value=55 Score=26.48 Aligned_cols=39 Identities=26% Similarity=0.477 Sum_probs=30.9
Q ss_pred HhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 74 TKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 74 ~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
.....|++||.++...+.-...|+.++..+..++..+..
T Consensus 23 RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 23 RKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345568888888888888888888888888888877653
No 67
>smart00338 BRLZ basic region leucin zipper.
Probab=49.53 E-value=53 Score=26.58 Aligned_cols=38 Identities=29% Similarity=0.490 Sum_probs=28.7
Q ss_pred hhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 75 KQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 75 ~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
.+..+++||.+++..+.-..+|+.++..+..++..++.
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 24 KKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888888888888888777777664
No 68
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=49.40 E-value=45 Score=28.46 Aligned_cols=76 Identities=21% Similarity=0.307 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhh-hhhhc-H---------HHHHHHHHHhhhhhc-hhhhHHHHhhHHhhhhhHHHHHHHhh
Q 007188 21 TAREAAARIMASERQALRFEK-DLSNT-K---------DEALRLLVRVKQMID-STTKEAEITSLTKQRKVDELEAQLNE 88 (614)
Q Consensus 21 taKEAAaRVm~aERkA~~~~q-eL~~~-K---------eeaL~~LlRLKq~~D-aki~EaE~~sl~~qrki~ELEaQL~e 88 (614)
+..|+|...=++.+-...|+. +|... + ++.|+.|-.++.+.+ .-+.=+++ +.+=.|..|++.
T Consensus 3 ~i~e~A~~~gvs~~tLr~ye~~Gli~p~r~~~g~R~y~~~dv~~l~~i~~L~~d~g~~l~~i------~~~l~l~~~~~~ 76 (91)
T cd04766 3 VISVAAELSGMHPQTLRLYERLGLLSPSRTDGGTRRYSERDIERLRRIQRLTQELGVNLAGV------KRILELEEELAE 76 (91)
T ss_pred CHHHHHHHHCcCHHHHHHHHHCCCcCCCcCCCCCeeECHHHHHHHHHHHHHHHHcCCCHHHH------HHHHHHHHHHHH
Confidence 345666666666666655543 23332 2 335555555555544 44443333 334448888777
Q ss_pred hHHHHHHHHHHHHH
Q 007188 89 AEDVITDLRSELRW 102 (614)
Q Consensus 89 aed~v~~Lr~ELr~ 102 (614)
++.-+..||..|++
T Consensus 77 l~~~l~~l~~~~~~ 90 (91)
T cd04766 77 LRAELDELRARLRR 90 (91)
T ss_pred HHHHHHHHHHHhcc
Confidence 77778888877765
No 69
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=48.77 E-value=18 Score=44.74 Aligned_cols=77 Identities=19% Similarity=0.208 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHh
Q 007188 8 VALKKAYADIILNTAREAAARIMASERQALRFEKDLSNTKDEALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLN 87 (614)
Q Consensus 8 ~ALkkAyadiilntaKEAAaRVm~aERkA~~~~qeL~~~KeeaL~~LlRLKq~~Daki~EaE~~sl~~qrki~ELEaQL~ 87 (614)
+-||.+--.=-+|+..+|+.++.-|||++-.--.+|.++.+.+ |.-..|+.+-.+.+. ...+++.+.||++.|+
T Consensus 1291 ~~ik~sdi~GA~~~~r~a~~~s~ea~~r~~~s~~~l~s~~~~s-----R~e~l~~k~k~~f~~-~~~n~~~L~el~~~l~ 1364 (1758)
T KOG0994|consen 1291 EKIKESDILGAFNSTRHAYEQSAEAERRVDASSRELASLVDQS-----RVEELLVKQKGDFGG-LAENSRLLVELRAELS 1364 (1758)
T ss_pred HHhhccCchhHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhh-----HHHHHHHHhhhcccc-cccccHHHHHHHHHhc
Confidence 4444443333579999999999999999999999999999988 766777666666665 5667777777777766
Q ss_pred hhH
Q 007188 88 EAE 90 (614)
Q Consensus 88 eae 90 (614)
...
T Consensus 1365 sL~ 1367 (1758)
T KOG0994|consen 1365 SLP 1367 (1758)
T ss_pred CCC
Confidence 543
No 70
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=48.40 E-value=96 Score=27.94 Aligned_cols=39 Identities=26% Similarity=0.446 Sum_probs=26.8
Q ss_pred HhhhhhHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHHHhc
Q 007188 74 TKQRKVDELEAQLNEA--EDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 74 ~~qrki~ELEaQL~ea--ed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
.+.+|++.+|.++... .+-|.+|+.+|-+++.++..+.-
T Consensus 46 ~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~ 86 (106)
T PF10805_consen 46 EHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSA 86 (106)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4566777777777776 66677777777777766666653
No 71
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=48.33 E-value=4.1e+02 Score=31.18 Aligned_cols=11 Identities=36% Similarity=0.504 Sum_probs=4.3
Q ss_pred HHHHHHHhhhh
Q 007188 33 ERQALRFEKDL 43 (614)
Q Consensus 33 ERkA~~~~qeL 43 (614)
+++...+++++
T Consensus 307 ~~~~~~~~~~l 317 (1164)
T TIGR02169 307 ERSIAEKEREL 317 (1164)
T ss_pred HHHHHHHHHHH
Confidence 33333344433
No 72
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=48.12 E-value=2.4e+02 Score=28.53 Aligned_cols=14 Identities=14% Similarity=0.354 Sum_probs=9.2
Q ss_pred CchhhHHHHhhhhh
Q 007188 206 NGCTQRIRALESNL 219 (614)
Q Consensus 206 NGcTQRIrAle~nl 219 (614)
.|.-.|+.+|+..|
T Consensus 231 asldtqLe~l~~~l 244 (255)
T TIGR03825 231 ASVDTQLEQLKEKL 244 (255)
T ss_pred eeHHHHHHHHHHHH
Confidence 55666777776665
No 73
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=47.60 E-value=89 Score=33.12 Aligned_cols=64 Identities=11% Similarity=0.118 Sum_probs=50.6
Q ss_pred HHHHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 49 EALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 49 eaL~~LlRLKq~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
++-+|...-|+.++.++...+...-..+-+..+.|+.+.++.+-|++.+.-|.++..+.-++.+
T Consensus 186 ~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k 249 (269)
T PF05278_consen 186 DQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSK 249 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466788888888888777766666677888888899999999999999888888777666654
No 74
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=47.14 E-value=2.8e+02 Score=36.53 Aligned_cols=40 Identities=13% Similarity=0.156 Sum_probs=22.4
Q ss_pred HHHHHHHhhhhhhcHHHHHHHHHHhhhhhchhhhHHHHhhH
Q 007188 33 ERQALRFEKDLSNTKDEALRLLVRVKQMIDSTTKEAEITSL 73 (614)
Q Consensus 33 ERkA~~~~qeL~~~KeeaL~~LlRLKq~~Daki~EaE~~sl 73 (614)
+.++..+...|.-+++ .+..|-|....+-..|.+++..-.
T Consensus 1469 ~tel~kl~~~lee~~e-~~e~l~renk~l~~ei~dl~~~~~ 1508 (1930)
T KOG0161|consen 1469 STELQKLKNALEELLE-QLEELRRENKNLSQEIEDLEEQKD 1508 (1930)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555 566666666666666666554433
No 75
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=47.13 E-value=2.6e+02 Score=32.39 Aligned_cols=17 Identities=12% Similarity=0.229 Sum_probs=9.4
Q ss_pred chHHHHHHHHHHHHHHH
Q 007188 3 ESEKMVALKKAYADIIL 19 (614)
Q Consensus 3 ese~l~ALkkAyadiil 19 (614)
|+++...+-.++|+.-+
T Consensus 238 dP~~Aa~ilN~la~~Yi 254 (726)
T PRK09841 238 DPQLITRILNSIANNYL 254 (726)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 56666555555555444
No 76
>PRK11519 tyrosine kinase; Provisional
Probab=46.13 E-value=1.7e+02 Score=33.77 Aligned_cols=45 Identities=9% Similarity=0.166 Sum_probs=25.5
Q ss_pred cchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhcHH
Q 007188 2 AESEKMVALKKAYADIILNTAREAAARIMASERQALRFEKDLSNTKD 48 (614)
Q Consensus 2 aese~l~ALkkAyadiilntaKEAAaRVm~aERkA~~~~qeL~~~Ke 48 (614)
.|+++...+-.|+|+..++..-+. |--.+++-...+++.|...++
T Consensus 237 ~dP~~Aa~iaN~l~~~Yi~~~~~~--k~~~a~~a~~fL~~ql~~l~~ 281 (719)
T PRK11519 237 EDREQIRDILNSITRNYLEQNIER--KSEEASKSLAFLAQQLPEVRS 281 (719)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777776655442 333344444455555544443
No 77
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=46.13 E-value=95 Score=29.79 Aligned_cols=31 Identities=26% Similarity=0.494 Sum_probs=23.3
Q ss_pred hhhhhHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 007188 75 KQRKVDELEAQLNEAEDVITDLRSELRWVTD 105 (614)
Q Consensus 75 ~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~ 105 (614)
...|++.++.++.+++..+..++.++..+..
T Consensus 161 ~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~ 191 (236)
T PF09325_consen 161 RQDKVEQAENEIEEAERRVEQAKDEFEEISE 191 (236)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888888888888887777777666544
No 78
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=45.85 E-value=3.6e+02 Score=27.81 Aligned_cols=9 Identities=33% Similarity=0.527 Sum_probs=3.3
Q ss_pred hhhHHHHHH
Q 007188 77 RKVDELEAQ 85 (614)
Q Consensus 77 rki~ELEaQ 85 (614)
..+.+++++
T Consensus 210 ~~l~~~~~~ 218 (423)
T TIGR01843 210 GELGRLEAE 218 (423)
T ss_pred hHHHHHHHH
Confidence 333333333
No 79
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=45.69 E-value=1.5e+02 Score=27.11 Aligned_cols=54 Identities=17% Similarity=0.348 Sum_probs=30.2
Q ss_pred HHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 007188 53 LLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKV 110 (614)
Q Consensus 53 ~LlRLKq~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (614)
.++|++.+.++.-.|.| .- +.--.++++....+.+-|.+|+.+|..++..+...
T Consensus 61 ~~~k~q~~~~~n~~e~e--~Y--~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~k 114 (139)
T PF05615_consen 61 SILKSQLILEMNKRERE--NY--EQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQNK 114 (139)
T ss_pred HHHHHHHHHHHHHHHHH--HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555554333322 22 22234566666677777788888877777655443
No 80
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=45.58 E-value=47 Score=32.17 Aligned_cols=44 Identities=36% Similarity=0.425 Sum_probs=19.3
Q ss_pred HHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 007188 67 EAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKV 110 (614)
Q Consensus 67 EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (614)
+.+.......++|.+|++.+...+.-|.+|..+|+.....++.+
T Consensus 106 ~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l 149 (194)
T PF08614_consen 106 ELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEIL 149 (194)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555555555544444443
No 81
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=45.49 E-value=41 Score=34.39 Aligned_cols=38 Identities=21% Similarity=0.346 Sum_probs=25.7
Q ss_pred hhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 75 KQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 75 ~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
+.+-.-||..||...+.-|++||-.+.+.+.+|+++..
T Consensus 52 ~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~ 89 (263)
T PRK10803 52 HSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 89 (263)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33444566666666666677777777777777777764
No 82
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=45.09 E-value=2.4e+02 Score=25.62 Aligned_cols=74 Identities=19% Similarity=0.285 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHH
Q 007188 20 NTAREAAARIMASERQALRFEKDLSNTKDEALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSE 99 (614)
Q Consensus 20 ntaKEAAaRVm~aERkA~~~~qeL~~~KeeaL~~LlRLKq~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~E 99 (614)
.+.+|.-.|| ||=|.-|+..--+=-+.=+.|| |..++++ =+++|++|+.|+.++.+-|..|+.+
T Consensus 8 ~~~~ev~~~v---e~vA~eLh~~YssKHE~KV~~L---KksYe~r----------wek~v~~L~~e~~~l~~E~e~L~~~ 71 (87)
T PF12709_consen 8 ESQKEVEKAV---EKVARELHALYSSKHETKVKAL---KKSYEAR----------WEKKVDELENENKALKRENEQLKKK 71 (87)
T ss_pred hhHHHHHHHH---HHHHHHHHHHHhhHHHHHHHHH---HhhHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555444 4555555544444444555554 5555554 4678899999988888888888887
Q ss_pred HHHHHHHHHH
Q 007188 100 LRWVTDKLEK 109 (614)
Q Consensus 100 Lr~~~~eLEk 109 (614)
|...+.|=.+
T Consensus 72 l~~e~~Ek~~ 81 (87)
T PF12709_consen 72 LDTEREEKQE 81 (87)
T ss_pred HHHHHHHHHH
Confidence 7766655443
No 83
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.72 E-value=60 Score=34.22 Aligned_cols=55 Identities=22% Similarity=0.328 Sum_probs=38.9
Q ss_pred hhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 58 KQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 58 Kq~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
.+--|++|.+.+..--.-|.+|+-|.+|+.+.+.-+.+++.|..+.+.+++++..
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~ 87 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQK 87 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555777777777766677777777777777777777777777777766666653
No 84
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=44.55 E-value=40 Score=34.72 Aligned_cols=36 Identities=28% Similarity=0.514 Sum_probs=31.0
Q ss_pred hhhhHHHHHHHhhhHHHHHHHHHHHHHHHHH----HHHHh
Q 007188 76 QRKVDELEAQLNEAEDVITDLRSELRWVTDK----LEKVK 111 (614)
Q Consensus 76 qrki~ELEaQL~eaed~v~~Lr~ELr~~~~e----LEk~~ 111 (614)
+.|..|||++|...+..|..||.|+..++.. -||+|
T Consensus 92 R~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 92 RQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999999999888764 46776
No 85
>PRK00736 hypothetical protein; Provisional
Probab=44.46 E-value=56 Score=27.59 Aligned_cols=35 Identities=26% Similarity=0.423 Sum_probs=28.1
Q ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 77 RKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 77 rki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
.+|.+||.+|--.|++|.+|-..+-+-+.++..++
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~ 39 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMR 39 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45999999999999999888877777776666555
No 86
>PHA03161 hypothetical protein; Provisional
Probab=44.24 E-value=87 Score=30.79 Aligned_cols=58 Identities=17% Similarity=0.375 Sum_probs=40.6
Q ss_pred HHHHHHHHH-hhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 48 DEALRLLVR-VKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 48 eeaL~~LlR-LKq~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
+..+.++|. |-..|..+-+|.++-+--..+|++.+|+ .+|.|.+|+.||.- |||-+..
T Consensus 56 ~~~i~~~v~~l~~~I~~k~kE~~~L~~fd~kkl~~~E~----L~drv~eLkeel~~---ELe~l~~ 114 (150)
T PHA03161 56 QKSIEGMLQAVDLSIQEKKKELSLLKAFDRHKLSAAED----LQDKILELKEDIHF---EIEALNH 114 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH----HHHHHHHHHHHHHH---HHHHHhc
Confidence 345555554 5556667777777777778889988876 47889999999875 4554443
No 87
>PRK00295 hypothetical protein; Provisional
Probab=43.83 E-value=58 Score=27.50 Aligned_cols=35 Identities=26% Similarity=0.334 Sum_probs=26.3
Q ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 77 RKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 77 rki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
.+|.+||.+|--.||+|.+|-..+-+-+.++..++
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~ 39 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQ 39 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35999999999999888888776666665555554
No 88
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=43.40 E-value=75 Score=33.52 Aligned_cols=61 Identities=25% Similarity=0.379 Sum_probs=37.8
Q ss_pred HHHHHHHhhhhhchhhhHHHHhh---------HHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 007188 50 ALRLLVRVKQMIDSTTKEAEITS---------LTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKV 110 (614)
Q Consensus 50 aL~~LlRLKq~~Daki~EaE~~s---------l~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (614)
||.+|-|+...||-|---.|+.- -.-....+|||+.+.+.++-+.+|+.|+-++...+.++
T Consensus 120 GLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l 189 (290)
T COG4026 120 GLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKL 189 (290)
T ss_pred HHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56666666666665422222111 11134677888888888888888888887766655443
No 89
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=42.96 E-value=62 Score=32.61 Aligned_cols=56 Identities=21% Similarity=0.370 Sum_probs=42.9
Q ss_pred hhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 007188 63 STTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKNNPLQPVNG 120 (614)
Q Consensus 63 aki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~~~~qp~n~ 120 (614)
.+.+|+++. -.+++.|.||+-++++.++.|++++..+..+...|.+.+. .++|++.
T Consensus 93 ~~~~e~~ke-e~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~~~l~~~~~-el~~~~q 148 (181)
T KOG3335|consen 93 QARKERKKE-EKRKQEIMELRLKVEKLENAIAELTKFFSQLHSKLNKPES-ELKPIRQ 148 (181)
T ss_pred hhhcchhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc-ccccccc
Confidence 344555553 4567789999999999999999999999999988888765 3444443
No 90
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=42.93 E-value=2.5e+02 Score=32.96 Aligned_cols=101 Identities=22% Similarity=0.318 Sum_probs=59.4
Q ss_pred HHHHHhhHHHHHHHHHH-HHHHHHHHhhhhhhcHHHHHHHH----HHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhh
Q 007188 15 ADIILNTAREAAARIMA-SERQALRFEKDLSNTKDEALRLL----VRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEA 89 (614)
Q Consensus 15 adiilntaKEAAaRVm~-aERkA~~~~qeL~~~KeeaL~~L----lRLKq~~Daki~EaE~~sl~~qrki~ELEaQL~ea 89 (614)
..-+..+.+|+..+++- +||-|...+-+.+..+ .+|..| -+|+.....+ +|++...-.++++|.++...+.+-
T Consensus 331 ~~~L~~~~~e~~~~~~~~s~~~al~~ele~~~l~-A~l~~L~se~q~L~~~~~~r-~e~~~~Lq~K~q~I~~frqlv~e~ 408 (632)
T PF14817_consen 331 SQRLQRLLEEIERRLSGSSEREALALELEVAGLK-ASLNALRSECQRLKEAAAER-QEALRSLQAKWQRILDFRQLVSEK 408 (632)
T ss_pred HHHHHHHHHHHHHHccCcchhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444332 4454443333333332 223333 3455555555 777777788999999999999999
Q ss_pred HHHHHHH-------HHHHHHHHHHHHHHhcCCCCC
Q 007188 90 EDVITDL-------RSELRWVTDKLEKVKNNPLQP 117 (614)
Q Consensus 90 ed~v~~L-------r~ELr~~~~eLEk~~~~~~qp 117 (614)
|++|+.| +..|.+...|....-.+.+.|
T Consensus 409 QeqIr~LiK~Nsaakt~L~q~~~E~~~~~~~kl~P 443 (632)
T PF14817_consen 409 QEQIRALIKGNSAAKTQLEQSPAEAQEFVQRKLVP 443 (632)
T ss_pred HHHHHHHHHhhHHHHHHHHhChHHHHHHHhcccCC
Confidence 9999976 455666665554444445555
No 91
>PRK02224 chromosome segregation protein; Provisional
Probab=42.78 E-value=5.3e+02 Score=30.03 Aligned_cols=20 Identities=10% Similarity=0.139 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHhhhhhhcH
Q 007188 28 RIMASERQALRFEKDLSNTK 47 (614)
Q Consensus 28 RVm~aERkA~~~~qeL~~~K 47 (614)
++-..++++..++.++...+
T Consensus 531 ~le~~~~~~~~l~~e~~~l~ 550 (880)
T PRK02224 531 TIEEKRERAEELRERAAELE 550 (880)
T ss_pred HHHhHHHHHHHHHHHHHHHH
Confidence 34445555555555555543
No 92
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=42.67 E-value=1.4e+02 Score=27.15 Aligned_cols=54 Identities=17% Similarity=0.340 Sum_probs=43.8
Q ss_pred HHHHHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHH
Q 007188 48 DEALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELR 101 (614)
Q Consensus 48 eeaL~~LlRLKq~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr 101 (614)
+=++..||=....+...+...+-..-.-+..++.|+..+.+..+-+..|+.|+|
T Consensus 65 Ql~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~k 118 (118)
T PF13815_consen 65 QLSIEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKESK 118 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 446777888888888888888888777888888888888888888888888764
No 93
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=41.79 E-value=66 Score=27.71 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=20.0
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 007188 79 VDELEAQLNEAEDVITDLRSELRWVTDK 106 (614)
Q Consensus 79 i~ELEaQL~eaed~v~~Lr~ELr~~~~e 106 (614)
.++||++.+.|=|+|+-|+.|+.+++.+
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~ 33 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEK 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777776666653
No 94
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=41.46 E-value=4.3e+02 Score=31.81 Aligned_cols=91 Identities=20% Similarity=0.330 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHHHHhhhh------hchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHH
Q 007188 22 AREAAARIMASERQALRFEKDLSNTKDEALRLLVRVKQM------IDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITD 95 (614)
Q Consensus 22 aKEAAaRVm~aERkA~~~~qeL~~~KeeaL~~LlRLKq~------~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~ 95 (614)
.+..-.++--+|.+...++.+|..+++=.=.+=..|+.| ++.++.++|..--.-+.||.-||.+|+.--.-=.+
T Consensus 619 lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e 698 (769)
T PF05911_consen 619 LESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKERALSEE 698 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 456677888899999999999998886554444445544 77777755444445677888888888765444444
Q ss_pred HHHHHHHHHHHHHHHhc
Q 007188 96 LRSELRWVTDKLEKVKN 112 (614)
Q Consensus 96 Lr~ELr~~~~eLEk~~~ 112 (614)
+-..-+.+.++|+.+..
T Consensus 699 ~~~kc~~Le~el~r~~~ 715 (769)
T PF05911_consen 699 LEAKCRELEEELERMKK 715 (769)
T ss_pred hhhHHHHHHHHHHhhhc
Confidence 44445566666766654
No 95
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=41.33 E-value=1e+02 Score=29.84 Aligned_cols=52 Identities=25% Similarity=0.375 Sum_probs=44.8
Q ss_pred HHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 007188 51 LRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTD 105 (614)
Q Consensus 51 L~~LlRLKq~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~ 105 (614)
+.-|++||++ +.-.||.....++++..+.-+++..|+..+.+.|....+-.+
T Consensus 2 i~~Ll~IK~~---R~drAe~a~~~q~~~l~~a~~~~~~a~~~l~dyr~wr~~ee~ 53 (152)
T PF07321_consen 2 ISRLLRIKHL---REDRAERALRRQERRLQEARAALQQAEQELADYRQWRQREEE 53 (152)
T ss_pred cHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899986 667799999999999999999999999999999988766443
No 96
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=41.32 E-value=5.8e+02 Score=30.40 Aligned_cols=10 Identities=20% Similarity=0.438 Sum_probs=4.8
Q ss_pred hHHHHhhhhh
Q 007188 210 QRIRALESNL 219 (614)
Q Consensus 210 QRIrAle~nl 219 (614)
..+..|+.-|
T Consensus 716 eA~~~l~~fl 725 (782)
T PRK00409 716 EALERLDKYL 725 (782)
T ss_pred HHHHHHHHHH
Confidence 4455555443
No 97
>PRK09039 hypothetical protein; Validated
Probab=41.21 E-value=3.8e+02 Score=28.68 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=14.9
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 007188 79 VDELEAQLNEAEDVITDLRSELRWVTDKLEKV 110 (614)
Q Consensus 79 i~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (614)
+..||++|..+|.-.++.+..|...+.+|+.+
T Consensus 153 la~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 153 LAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444455555544
No 98
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=41.15 E-value=5.2e+02 Score=32.18 Aligned_cols=104 Identities=12% Similarity=0.201 Sum_probs=51.0
Q ss_pred HHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHhhhhhhcHH---HHHHHHHHhhhhhc--hhhhHHHHhhHHhh--hh
Q 007188 8 VALKKAYADII--LNTAREAAARIMASERQALRFEKDLSNTKD---EALRLLVRVKQMID--STTKEAEITSLTKQ--RK 78 (614)
Q Consensus 8 ~ALkkAyadii--lntaKEAAaRVm~aERkA~~~~qeL~~~Ke---eaL~~LlRLKq~~D--aki~EaE~~sl~~q--rk 78 (614)
.+++..+.++= +.-.++.+.++-..+.+...++.+|...+. .--...=||...|+ ..-.+.|+..+..+ .+
T Consensus 234 e~~~~~~~~le~ei~~l~~~~~~l~~~~~~~~~l~~ql~~l~~~~~~~~~~~~rL~~~i~~~l~~s~eEL~~ll~~f~~~ 313 (1311)
T TIGR00606 234 ESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRT 313 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHH
Confidence 34444444433 222334455555555555555555555443 22223334444332 12233444444333 55
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 79 VDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 79 i~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
+.++++++.+.+.-+.++..+++..+.+.....
T Consensus 314 ~~e~~~~~~~le~e~~~l~~el~~l~~~~~~l~ 346 (1311)
T TIGR00606 314 VREKERELVDCQRELEKLNKERRLLNQEKTELL 346 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666665555544
No 99
>PRK14011 prefoldin subunit alpha; Provisional
Probab=41.13 E-value=53 Score=31.44 Aligned_cols=36 Identities=28% Similarity=0.421 Sum_probs=28.7
Q ss_pred hhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 007188 75 KQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKV 110 (614)
Q Consensus 75 ~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (614)
=.+||++|++.+...+.+|.++..+++++..+|++-
T Consensus 93 ~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k 128 (144)
T PRK14011 93 FKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKR 128 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888888888888888888888888776653
No 100
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=40.94 E-value=1.8e+02 Score=28.75 Aligned_cols=25 Identities=24% Similarity=0.502 Sum_probs=11.5
Q ss_pred hhhHHHHHHHhhhHHHHHHHHHHHH
Q 007188 77 RKVDELEAQLNEAEDVITDLRSELR 101 (614)
Q Consensus 77 rki~ELEaQL~eaed~v~~Lr~ELr 101 (614)
.+|.+|+.++.+.+..+.+|+..+.
T Consensus 127 ~~i~~L~~e~~~L~~~~~~l~~~~e 151 (189)
T PF10211_consen 127 EEIEELEEEKEELEKQVQELKNKCE 151 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455554444444444444333
No 101
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=40.62 E-value=3.9e+02 Score=26.75 Aligned_cols=45 Identities=16% Similarity=0.244 Sum_probs=34.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHHHHhhhh
Q 007188 16 DIILNTAREAAARIMASERQALRFEKDLSNTKDEALRLLVRVKQM 60 (614)
Q Consensus 16 diilntaKEAAaRVm~aERkA~~~~qeL~~~KeeaL~~LlRLKq~ 60 (614)
+.|...-.+|...---+|..-..|++.|..+|.+|-.++-.-+.-
T Consensus 87 ~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~e 131 (204)
T PRK09174 87 DRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAAREA 131 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666777777788888899999999999998887655433
No 102
>PRK04325 hypothetical protein; Provisional
Probab=40.49 E-value=68 Score=27.48 Aligned_cols=34 Identities=29% Similarity=0.442 Sum_probs=25.8
Q ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 78 KVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 78 ki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
+|.+||.+|--.|++|.+|-..+-+-+.++..++
T Consensus 10 Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~ 43 (74)
T PRK04325 10 RITELEIQLAFQEDLIDGLNATVARQQQTLDLLQ 43 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999998888888888776666665555544
No 103
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=39.87 E-value=94 Score=28.63 Aligned_cols=38 Identities=24% Similarity=0.346 Sum_probs=33.4
Q ss_pred HHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 007188 73 LTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKV 110 (614)
Q Consensus 73 l~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (614)
-.|-+.-=++-.+|++|.+.+...+.+|+.++.+||+-
T Consensus 56 Y~Qs~~Yv~~NerLqqa~~~Lkkk~e~L~~age~Le~~ 93 (97)
T PF15136_consen 56 YQQSRTYVAMNERLQQARDQLKKKCEELRQAGEELERD 93 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677899999999999999999999999999974
No 104
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=39.63 E-value=4.5e+02 Score=27.19 Aligned_cols=11 Identities=27% Similarity=0.458 Sum_probs=5.6
Q ss_pred HHHHHHHHHHH
Q 007188 8 VALKKAYADII 18 (614)
Q Consensus 8 ~ALkkAyadii 18 (614)
..|..|.|++.
T Consensus 86 ~~l~~a~a~l~ 96 (346)
T PRK10476 86 LTVAQAQADLA 96 (346)
T ss_pred HHHHHHHHHHH
Confidence 34555555543
No 105
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=39.57 E-value=4.5e+02 Score=30.61 Aligned_cols=101 Identities=20% Similarity=0.312 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHH
Q 007188 9 ALKKAYADIILNTA---REAAARIMASERQALRFEKDLSNTKDEALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQ 85 (614)
Q Consensus 9 ALkkAyadiilnta---KEAAaRVm~aERkA~~~~qeL~~~KeeaL~~LlRLKq~~Daki~EaE~~sl~~qrki~ELEaQ 85 (614)
++++-..+++.+.- ..=.+-|-+++.|-.-|+++....+-.=+.-+-+|+...+.+..| +.....+|+++..+
T Consensus 380 ~l~~k~~~lL~d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e----~~~~~~~ik~~r~~ 455 (594)
T PF05667_consen 380 KLKKKTVELLPDAEENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESE----SKQKLQEIKELREE 455 (594)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchH----HHHHHHHHHHHHHH
Confidence 44555555543321 112455667777777888888777777777777777666655433 34456677777777
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 007188 86 LNEAEDVITDLRSELRWVTDKLEKVKNN 113 (614)
Q Consensus 86 L~eaed~v~~Lr~ELr~~~~eLEk~~~~ 113 (614)
..+.+.-+..--...+.+..+||++.+.
T Consensus 456 ~k~~~~e~~~Kee~~~qL~~e~e~~~k~ 483 (594)
T PF05667_consen 456 IKEIEEEIRQKEELYKQLVKELEKLPKD 483 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 6666666666666667777778777654
No 106
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=39.49 E-value=2.1e+02 Score=34.17 Aligned_cols=95 Identities=18% Similarity=0.230 Sum_probs=52.7
Q ss_pred HHHHHHHHHhhhhhhcHHH----------HHHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHH
Q 007188 31 ASERQALRFEKDLSNTKDE----------ALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSEL 100 (614)
Q Consensus 31 ~aERkA~~~~qeL~~~Kee----------aL~~LlRLKq~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~EL 100 (614)
++..-+..+..||-..|.+ +...+..=-|.+..++.-.|..+-..+.+|.+||+.|+.+..+..+-+..|
T Consensus 363 vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~L 442 (717)
T PF09730_consen 363 VAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSL 442 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4444455666666655442 111111112333334444455444556799999999998888777766666
Q ss_pred HHHHHHHHHHh------cCCCCCCCCCcccc
Q 007188 101 RWVTDKLEKVK------NNPLQPVNGQTTKE 125 (614)
Q Consensus 101 r~~~~eLEk~~------~~~~qp~n~q~~k~ 125 (614)
.-++++|-.+- =+.++.+||..+.-
T Consensus 443 nsAQDELvtfSEeLAqLYHHVC~cNgeTPnR 473 (717)
T PF09730_consen 443 NSAQDELVTFSEELAQLYHHVCMCNGETPNR 473 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCcc
Confidence 65555554433 12556667655444
No 107
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=39.20 E-value=4.7e+02 Score=27.62 Aligned_cols=97 Identities=19% Similarity=0.357 Sum_probs=59.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhh-------hhhhcHHHHHHHHHHhhhhhchhhhHHHHhhH-----HhhhhhHHH
Q 007188 15 ADIILNTAREAAARIMASERQALRFEK-------DLSNTKDEALRLLVRVKQMIDSTTKEAEITSL-----TKQRKVDEL 82 (614)
Q Consensus 15 adiilntaKEAAaRVm~aERkA~~~~q-------eL~~~KeeaL~~LlRLKq~~Daki~EaE~~sl-----~~qrki~EL 82 (614)
+|=|.+.+||----. +--|+-..++. +|.-+||+-.+.||.|- .+..-.|.+|..| .+-+-|+.|
T Consensus 17 ~dDlE~i~kelie~l-~~~~~qk~l~~gE~v~il~Ll~~kd~ef~~llkla--~eq~k~e~~m~~Lea~VEkrD~~IQqL 93 (272)
T KOG4552|consen 17 ADDLEHIVKELIETL-INRDKQKMLKNGETVNILKLLDSKDDEFKTLLKLA--PEQQKREQLMRTLEAHVEKRDEVIQQL 93 (272)
T ss_pred hhHHHHHHHHHHHHH-HhhhHHHHHhcchHHHHHHHHHhccHHHHHHHHHh--HhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 455666666644322 22344455554 57789999999998763 3333344444433 234668999
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 007188 83 EAQLNEAEDVITDLRSELRWVTDKLEKVKNNPLQP 117 (614)
Q Consensus 83 EaQL~eaed~v~~Lr~ELr~~~~eLEk~~~~~~qp 117 (614)
+.+|.+||-|++.-=.. ++..|..+..-.+.|
T Consensus 94 qk~LK~aE~iLtta~fq---A~qKLksi~~A~krp 125 (272)
T KOG4552|consen 94 QKNLKSAEVILTTACFQ---ANQKLKSIKEAEKRP 125 (272)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCC
Confidence 99999999998876544 444455444444444
No 108
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=39.05 E-value=3.6e+02 Score=27.56 Aligned_cols=42 Identities=24% Similarity=0.387 Sum_probs=27.7
Q ss_pred HHhhHHHHHHHHH-HHHHHHHHHhhhhhhcHHHHHHHHHHhhh
Q 007188 18 ILNTAREAAARIM-ASERQALRFEKDLSNTKDEALRLLVRVKQ 59 (614)
Q Consensus 18 ilntaKEAAaRVm-~aERkA~~~~qeL~~~KeeaL~~LlRLKq 59 (614)
-|..-|+.+.|++ ++|-+|.+|++||..+..+--.+--|-++
T Consensus 109 ~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q 151 (192)
T PF11180_consen 109 QLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQ 151 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666654 46788888888888777765555544443
No 109
>PRK00846 hypothetical protein; Provisional
Probab=38.89 E-value=73 Score=28.04 Aligned_cols=36 Identities=22% Similarity=0.210 Sum_probs=29.3
Q ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 77 RKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 77 rki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
.+|.+||.+|--.+|+|..|-..+-+-+..++.++.
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ 48 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGARNAE 48 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999998888777777666666653
No 110
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=38.42 E-value=59 Score=28.42 Aligned_cols=36 Identities=22% Similarity=0.519 Sum_probs=30.0
Q ss_pred hhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 76 QRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 76 qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
.+||++|++++...++.+..++.++..+...|+...
T Consensus 83 ~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 118 (120)
T PF02996_consen 83 KKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLY 118 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578888999988888888888888888888887654
No 111
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=38.25 E-value=3.7e+02 Score=30.46 Aligned_cols=8 Identities=63% Similarity=0.729 Sum_probs=6.2
Q ss_pred HHHHhhhh
Q 007188 211 RIRALESN 218 (614)
Q Consensus 211 RIrAle~n 218 (614)
=|||||.-
T Consensus 226 nir~~e~~ 233 (514)
T TIGR03319 226 NIRALETL 233 (514)
T ss_pred hHHHHHHH
Confidence 39999864
No 112
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=37.50 E-value=4e+02 Score=30.09 Aligned_cols=60 Identities=13% Similarity=0.151 Sum_probs=36.2
Q ss_pred cHHHHHHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 007188 46 TKDEALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLE 108 (614)
Q Consensus 46 ~KeeaL~~LlRLKq~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLE 108 (614)
...+.|.+++-=++-...+ -+.....+|++++||-++=.++.+.|+++..+.-+++..-|
T Consensus 196 ~q~~kl~~~~~E~kk~~~~---l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA~~re~~a 255 (420)
T COG4942 196 AQQAKLAQLLEERKKTLAQ---LNSELSADQKKLEELRANESRLKNEIASAEAAAAKAREAAA 255 (420)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455554444333332 23334567888888888888888888888866655555444
No 113
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=37.48 E-value=4.1e+02 Score=26.14 Aligned_cols=86 Identities=12% Similarity=0.230 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcHHHHHH---HHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHH
Q 007188 23 REAAARIMASERQALRFEKDLSNTKDEALR---LLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSE 99 (614)
Q Consensus 23 KEAAaRVm~aERkA~~~~qeL~~~KeeaL~---~LlRLKq~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~E 99 (614)
.+....+...+++...+...+...+++--. .+-.+++.+..+-.... ......++...++.+.++.+..++..
T Consensus 59 ~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (302)
T PF10186_consen 59 QQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS----ASQDLVESRQEQLEELQNELEERKQR 134 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555544443222 22223333333222111 33445566667777777777777777
Q ss_pred HHHHHHHHHHHhc
Q 007188 100 LRWVTDKLEKVKN 112 (614)
Q Consensus 100 Lr~~~~eLEk~~~ 112 (614)
|..+...|...|.
T Consensus 135 l~~l~~~l~~~r~ 147 (302)
T PF10186_consen 135 LSQLQSQLARRRR 147 (302)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777776663
No 114
>PRK03918 chromosome segregation protein; Provisional
Probab=37.34 E-value=7e+02 Score=28.91 Aligned_cols=9 Identities=11% Similarity=-0.005 Sum_probs=3.9
Q ss_pred ccccCchhh
Q 007188 202 EPFRNGCTQ 210 (614)
Q Consensus 202 ELyRNGcTQ 210 (614)
..|--|-.|
T Consensus 787 ~~lS~G~~~ 795 (880)
T PRK03918 787 TFLSGGERI 795 (880)
T ss_pred hhCCHhHHH
Confidence 334444444
No 115
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=37.09 E-value=3.4e+02 Score=32.39 Aligned_cols=90 Identities=18% Similarity=0.281 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHH--HH---hhHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHH-HHhhhhhchhhhHHHHhhHHhhhh
Q 007188 5 EKMVALKKAYADI--IL---NTAREAAARIMASERQALRFEKDLSNTKDEALRLL-VRVKQMIDSTTKEAEITSLTKQRK 78 (614)
Q Consensus 5 e~l~ALkkAyadi--il---ntaKEAAaRVm~aERkA~~~~qeL~~~KeeaL~~L-lRLKq~~Daki~EaE~~sl~~qrk 78 (614)
+++++|..||..| |. ....+|.+.+| ....-+..||=+.| +||.|..- +.+-++ +..
T Consensus 370 ~il~Gl~ia~~~iDevI~iIR~s~~~k~~L~----------~~f~ls~~QaeaIL~mrL~~L~~--le~~~i-----~~E 432 (735)
T TIGR01062 370 HILEGLRIAFLNIDEVIEIIREEDEPKTILM----------ERFKLSAIQAEAILNLRLRHLAK--LEEHAI-----IDE 432 (735)
T ss_pred HHHHHHHHHHHhHHHHHHHHHcChhhHHHHH----------HhcCCCHHHHHHHHHhHHHHhhh--hHHHHH-----HHH
Confidence 5678999999765 22 22233332222 22233445555544 57776542 111111 223
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 79 VDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 79 i~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
.+||+++..+.+.++++-..=.+...+||+.++
T Consensus 433 ~~~l~~e~~~l~~~L~~~~~~~~~i~~el~~~~ 465 (735)
T TIGR01062 433 QSELEKERAILEKILKSERELNQLVKKEIQADA 465 (735)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 455555555555555555554555555555554
No 116
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=36.56 E-value=3.8e+02 Score=25.46 Aligned_cols=96 Identities=24% Similarity=0.320 Sum_probs=58.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhcH-------H---HHHHHHHHhhhhhchh---hhHHHHhhHHhhhh
Q 007188 12 KAYADIILNTAREAAARIMASERQALRFEKDLSNTK-------D---EALRLLVRVKQMIDST---TKEAEITSLTKQRK 78 (614)
Q Consensus 12 kAyadiilntaKEAAaRVm~aERkA~~~~qeL~~~K-------e---eaL~~LlRLKq~~Dak---i~EaE~~sl~~qrk 78 (614)
++=+|-....+-++.+.|=..|-+...+++++.... + .+-.-|-.+|+.++.. ...+| .-+||
T Consensus 6 k~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E----~l~rr 81 (143)
T PF12718_consen 6 KLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE----QLNRR 81 (143)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH----HHHhh
Confidence 455666677777777777777766666666654321 1 1111222223322222 12233 45799
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 79 VDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 79 i~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
|+-||.+|..|+..+.....-|+.+.-..+.+-
T Consensus 82 iq~LEeele~ae~~L~e~~ekl~e~d~~ae~~e 114 (143)
T PF12718_consen 82 IQLLEEELEEAEKKLKETTEKLREADVKAEHFE 114 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999888888887665555543
No 117
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=36.19 E-value=81 Score=27.66 Aligned_cols=36 Identities=17% Similarity=0.491 Sum_probs=29.3
Q ss_pred hhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 76 QRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 76 qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
.+|++.|+.++...++.+..++.++..+...|+.+.
T Consensus 93 ~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~ 128 (129)
T cd00890 93 KKRLETLEKQIEKLEKQLEKLQDQITELQEELQQLQ 128 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 577888888888888888888888888888877653
No 118
>PRK02793 phi X174 lysis protein; Provisional
Probab=35.90 E-value=95 Score=26.50 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=25.9
Q ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 77 RKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 77 rki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
.||.+||.+|--.|++|.+|-..+-+-+.++..++
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~ 42 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLR 42 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999888888887766655554444444
No 119
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=35.69 E-value=76 Score=27.50 Aligned_cols=35 Identities=23% Similarity=0.415 Sum_probs=28.0
Q ss_pred hhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 007188 76 QRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKV 110 (614)
Q Consensus 76 qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (614)
..++.+|+++|..+++-++.++.++..+...++-+
T Consensus 69 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 69 SPELKELEEELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44788889998888888888888888887777643
No 120
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=35.64 E-value=1.6e+02 Score=31.76 Aligned_cols=78 Identities=29% Similarity=0.473 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHh
Q 007188 8 VALKKAYADIILNTAREAAARIMASERQALRFEKDLSNTKDEALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLN 87 (614)
Q Consensus 8 ~ALkkAyadiilntaKEAAaRVm~aERkA~~~~qeL~~~KeeaL~~LlRLKq~~Daki~EaE~~sl~~qrki~ELEaQL~ 87 (614)
.-|.|.|-|| +|-.|++.- |+--|.+=-||-|.+-.+=.. | ..+.+.||++|.
T Consensus 55 ~qmtkty~Di------davt~lLeE--------------kerDLelaA~iGqsLl~~N~~-----L--~~~~~~le~~L~ 107 (306)
T PF04849_consen 55 SQMTKTYNDI------DAVTRLLEE--------------KERDLELAARIGQSLLEQNQD-----L--SERNEALEEQLG 107 (306)
T ss_pred hhhhcchhhH------HHHHHHHHH--------------HhhhHHHHHHHhHHHHHhccc-----H--HHHHHHHHHHHH
Confidence 5567777776 455555432 444444444554443332211 1 267889999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 88 EAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 88 eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
.+-+.|..||-||....+.|.-..+
T Consensus 108 ~~~e~v~qLrHeL~~kdeLL~~ys~ 132 (306)
T PF04849_consen 108 AALEQVEQLRHELSMKDELLQIYSN 132 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 9999999999999988777765554
No 121
>PRK02119 hypothetical protein; Provisional
Probab=35.26 E-value=93 Score=26.68 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=25.4
Q ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 77 RKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 77 rki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
.||.+||.+|--.||+|.+|-..+-+-+.++..++
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~ 43 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQ 43 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999998888888777666655555554444
No 122
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=35.21 E-value=2.7e+02 Score=30.78 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=12.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHH
Q 007188 81 ELEAQLNEAEDVITDLRSELRWVTD 105 (614)
Q Consensus 81 ELEaQL~eaed~v~~Lr~ELr~~~~ 105 (614)
+|+.++.+++.-+..|+.||..+..
T Consensus 149 ~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 149 EAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4444444444445555555554443
No 123
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=35.19 E-value=95 Score=34.73 Aligned_cols=56 Identities=29% Similarity=0.348 Sum_probs=36.6
Q ss_pred HhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 56 RVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 56 RLKq~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
||+| ++..|.+.|..--.++.+...||++|...+.-|.+|..+|.+..+.|.+.+.
T Consensus 39 ~l~q-~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~ 94 (420)
T COG4942 39 QLKQ-IQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRK 94 (420)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 4444 3555555565555566666777777777777777777777777777766664
No 124
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=35.17 E-value=2.2e+02 Score=33.65 Aligned_cols=33 Identities=18% Similarity=0.315 Sum_probs=22.4
Q ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 007188 77 RKVDELEAQLNEAEDVITDLRSELRWVTDKLEK 109 (614)
Q Consensus 77 rki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk 109 (614)
++.+.++.-..+|++++..+|.|++..-.+|.+
T Consensus 558 ~~~~~~~~a~~ea~~~~~~a~~~~~~~i~~lk~ 590 (771)
T TIGR01069 558 RERNKKLELEKEAQEALKALKKEVESIIRELKE 590 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555667778888888777777777765
No 125
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=34.25 E-value=7.9e+02 Score=30.33 Aligned_cols=10 Identities=30% Similarity=0.478 Sum_probs=5.1
Q ss_pred hhHHHHhhhh
Q 007188 209 TQRIRALESN 218 (614)
Q Consensus 209 TQRIrAle~n 218 (614)
-.+|+.++.-
T Consensus 948 ~~~i~~le~~ 957 (1163)
T COG1196 948 EREIERLEEE 957 (1163)
T ss_pred HHHHHHHHHH
Confidence 3455555554
No 126
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=33.69 E-value=5.8e+02 Score=27.76 Aligned_cols=38 Identities=13% Similarity=0.329 Sum_probs=16.7
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 007188 81 ELEAQLNEAEDVITDLRSELRWVTDKLEKVKNNPLQPVNG 120 (614)
Q Consensus 81 ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~~~~qp~n~ 120 (614)
+++++|.+++.-+..++.+|..+++.|+.+. ..-|.+|
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~~l~~~~--I~AP~dG 325 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKEDSQKGV--IKAPEDG 325 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCE--EECCCCe
Confidence 3344444444444444444444444443333 1245555
No 127
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.38 E-value=1.1e+02 Score=27.08 Aligned_cols=36 Identities=25% Similarity=0.320 Sum_probs=27.1
Q ss_pred hhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 76 QRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 76 qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
..||.|||-++-.-|++|..|-.-|-+-+-.+++++
T Consensus 7 E~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q 42 (72)
T COG2900 7 EARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQ 42 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999988888888777766666666666665
No 128
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=33.37 E-value=1.1e+02 Score=27.77 Aligned_cols=40 Identities=10% Similarity=0.052 Sum_probs=29.4
Q ss_pred HHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHH---HHHHHhc
Q 007188 73 LTKQRKVDELEAQLNEAEDVITDLRSELRWVTD---KLEKVKN 112 (614)
Q Consensus 73 l~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~---eLEk~~~ 112 (614)
...+++++++++++...+.-..+|+.|+.+.++ -+|+...
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR 72 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERAR 72 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHH
Confidence 455677888888888888888888888888755 4665543
No 129
>PRK04654 sec-independent translocase; Provisional
Probab=32.76 E-value=2.1e+02 Score=29.68 Aligned_cols=35 Identities=17% Similarity=0.363 Sum_probs=28.6
Q ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 78 KVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 78 ki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
+++||...|++.++-|.+++.+|+...++|++...
T Consensus 55 ~~~ELrk~l~~~~~~i~~~~~~lk~~~~el~q~a~ 89 (214)
T PRK04654 55 EAEELKRSLQDVQASLREAEDQLRNTQQQVEQGAR 89 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888888899999999999999987665
No 130
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=32.76 E-value=2.3e+02 Score=29.51 Aligned_cols=53 Identities=6% Similarity=0.243 Sum_probs=34.5
Q ss_pred HHHHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHH
Q 007188 49 EALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELR 101 (614)
Q Consensus 49 eaL~~LlRLKq~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr 101 (614)
++|+.+||++.-.-...-+++=.....+.+++.||+++.++++.|...-.+++
T Consensus 146 ~slk~vlK~RdqkQ~d~E~l~E~l~~rre~~~kLe~~ie~~~~~ve~f~~~~~ 198 (240)
T cd07667 146 ESMKNVLKKRDQVQAEYEAKLEAVALRKEERPKVPTDVEKCQDRVECFNADLK 198 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889998875543332222222234677899999999999998855444443
No 131
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=32.40 E-value=3.6e+02 Score=27.61 Aligned_cols=28 Identities=25% Similarity=0.469 Sum_probs=16.3
Q ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 77 RKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 77 rki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
.-|+-+|.| |.-|..=|+..+.||++++
T Consensus 167 ~Dl~~ie~Q-------V~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 167 EDLDTIEEQ-------VDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHhc
Confidence 345556666 5555555666666666553
No 132
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=32.18 E-value=5.8e+02 Score=26.23 Aligned_cols=27 Identities=26% Similarity=0.274 Sum_probs=16.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 007188 13 AYADIILNTAREAAARIMASERQALRF 39 (614)
Q Consensus 13 AyadiilntaKEAAaRVm~aERkA~~~ 39 (614)
|.|+++.+...|...++--.+.+-...
T Consensus 136 aaAe~~~~~~~~~~~~l~~~~~~l~~~ 162 (319)
T PF02601_consen 136 AAAELIVPDRRELLQRLDELRQRLNRA 162 (319)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 456667666666666666555544443
No 133
>PRK14154 heat shock protein GrpE; Provisional
Probab=31.65 E-value=78 Score=32.23 Aligned_cols=35 Identities=14% Similarity=0.374 Sum_probs=22.9
Q ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 78 KVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 78 ki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
.|++|+++|.+++.-+.+|+..+.|+..+.|..|+
T Consensus 53 ~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRK 87 (208)
T PRK14154 53 SREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRK 87 (208)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666777777777777776664
No 134
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=31.44 E-value=1.1e+02 Score=27.55 Aligned_cols=45 Identities=18% Similarity=0.345 Sum_probs=34.6
Q ss_pred hhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 007188 63 STTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKV 110 (614)
Q Consensus 63 aki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (614)
..+.||.. .=.+||+.|+.++.+.++.+..|+.++..+...|...
T Consensus 83 ~~~~eA~~---~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~ 127 (129)
T cd00584 83 KDLEEAIE---FLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQEL 127 (129)
T ss_pred ecHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445543 2367899999999999999999999998888887764
No 135
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=31.26 E-value=4.2e+02 Score=31.47 Aligned_cols=70 Identities=19% Similarity=0.286 Sum_probs=42.1
Q ss_pred cHHHHHHHH-HHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 007188 46 TKDEALRLL-VRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKNNPL 115 (614)
Q Consensus 46 ~KeeaL~~L-lRLKq~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~~~~ 115 (614)
+.++|=+.| |||.++.--.+.+.+.+--..+.+|++|+.-|..-+.+..-+..||....+..-.-|....
T Consensus 419 ~~~qa~~Il~m~L~~Lt~le~~kl~~E~~~l~~ei~~l~~iL~s~~~l~~~i~~eL~~ik~kfg~~RRT~I 489 (742)
T PRK05561 419 SEIQAEAILELRLRRLAKLEEIEIRKEQDELRKEIAELEAILASERKLRKLIKKELKADAKKFGDPRRTPI 489 (742)
T ss_pred CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCceee
Confidence 444544433 6777766555444444444455666677766666666666677777777766665555544
No 136
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=31.17 E-value=4.3e+02 Score=33.28 Aligned_cols=31 Identities=6% Similarity=0.039 Sum_probs=15.8
Q ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 007188 77 RKVDELEAQLNEAEDVITDLRSELRWVTDKL 107 (614)
Q Consensus 77 rki~ELEaQL~eaed~v~~Lr~ELr~~~~eL 107 (614)
++++++..++..+..-+.+++.++.++...+
T Consensus 935 ~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~ 965 (1353)
T TIGR02680 935 AALASGGRELPRLAEALATAEEARGRAEEKR 965 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555544444
No 137
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=31.02 E-value=6.9e+02 Score=30.99 Aligned_cols=89 Identities=16% Similarity=0.197 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHH
Q 007188 23 REAAARIMASERQALRFEKDLSNTKDEALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRW 102 (614)
Q Consensus 23 KEAAaRVm~aERkA~~~~qeL~~~KeeaL~~LlRLKq~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~ 102 (614)
+..+.++...-+.-..++++|...+-+.....-++.+-+..--.+.+-.--...+..++.+++..+..+-+..++.+|..
T Consensus 245 r~~~~~l~~~~~~l~~~~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~l~~ 324 (1201)
T PF12128_consen 245 RPEFDKLQQQYRQLQALEQQLCHLHAELNADEQQLEQEQPELKEELNELNEELEKLEDEIKELRDELNKELSALNADLAR 324 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666667777776666666655555555444322222222223333444445555555666667777777
Q ss_pred HHHHHHHHh
Q 007188 103 VTDKLEKVK 111 (614)
Q Consensus 103 ~~~eLEk~~ 111 (614)
.+.+|+++.
T Consensus 325 ~~~~L~~i~ 333 (1201)
T PF12128_consen 325 IKSELDEIE 333 (1201)
T ss_pred HHHHHHHHH
Confidence 777777665
No 138
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=30.91 E-value=8e+02 Score=27.47 Aligned_cols=30 Identities=17% Similarity=0.179 Sum_probs=22.3
Q ss_pred HhhhhhHHHHHHHhhhHHHHHHHHHHHHHH
Q 007188 74 TKQRKVDELEAQLNEAEDVITDLRSELRWV 103 (614)
Q Consensus 74 ~~qrki~ELEaQL~eaed~v~~Lr~ELr~~ 103 (614)
.+..++++|.++|.+.+..+.+....+...
T Consensus 375 ~~~~~l~~~~~~~~~le~~~~~~~~~~~~~ 404 (582)
T PF09731_consen 375 GRLAKLAELNSRLKALEEALDARSEAEDEN 404 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888888888888888777666544
No 139
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=30.83 E-value=95 Score=29.14 Aligned_cols=36 Identities=22% Similarity=0.435 Sum_probs=21.7
Q ss_pred HhhhhhHHHHHHHhhhHH----HHHHHHHHHHHHHHHHHH
Q 007188 74 TKQRKVDELEAQLNEAED----VITDLRSELRWVTDKLEK 109 (614)
Q Consensus 74 ~~qrki~ELEaQL~eaed----~v~~Lr~ELr~~~~eLEk 109 (614)
.|.++|.+|++++++++. +|..-...|.+++.-|..
T Consensus 101 ~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~i~~ 140 (144)
T PF11221_consen 101 EQLKRIKELEEENEEAEEELQEAVKEAEELLKQVQELIRE 140 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999887754 333333444444444433
No 140
>PF03528 Rabaptin: Rabaptin; InterPro: IPR018514 Regeneration of injured axons at neuromuscular junctions has been assumed to be regulated by extra-cellular factors that promote neurite outgrowth. A novel neurite outgrowth factor from chick denervated skeletal muscle has been cloned and characterised. The protein, termed neurocrescin (rabaptin), has been shown to be secreted in an activity-dependent fashion [].Rabaptin is a 100kDa coiled-coil protein that interacts with the GTP form of the small GTPase Rab5, a potent regulator of endocytic transport []. It is mainly cytosolic, but a fraction co-localises with Rab5 to early endosomes. Rab5 recruits rabaptin-5 to purified early endosomes in a GTP-dependent manner, demonstrating functional similarities with other members of the Ras superfamily. Immunodepletion of rabaptin-5 from cytosol strongly inhibits Rab5-dependent early endosome fusion. Thus, rabaptin-5 is a Rab effector required for membrane docking and fusion.; GO: 0005096 GTPase activator activity, 0008083 growth factor activity; PDB: 1X79_C.
Probab=30.58 E-value=56 Score=30.33 Aligned_cols=79 Identities=20% Similarity=0.255 Sum_probs=15.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHHHHhhhhhchhhhHHHHhhHHhhhh---hHHHHHHHhh
Q 007188 12 KAYADIILNTAREAAARIMASERQALRFEKDLSNTKDEALRLLVRVKQMIDSTTKEAEITSLTKQRK---VDELEAQLNE 88 (614)
Q Consensus 12 kAyadiilntaKEAAaRVm~aERkA~~~~qeL~~~KeeaL~~LlRLKq~~Daki~EaE~~sl~~qrk---i~ELEaQL~e 88 (614)
||.|-|+++|-+||++-|+--+. .|.+ .+.-=||+.+-. -|.++.. .+|-+ +++.|+-.-
T Consensus 1 k~~a~vse~tkQE~v~~~~r~~q------EEvA-------SLq~i~k~tv~~--ye~~~~~-LeqEr~Q~~q~~e~~~R- 63 (106)
T PF03528_consen 1 KMVATVSETTKQEAVIEVQRQWQ------EEVA-------SLQAILKETVSE--YETQWSL-LEQERLQWQQYRESEER- 63 (106)
T ss_dssp -----------------------------------------------------------------------------HH-
T ss_pred CcchHHHHhhhHHHHHHHHhHHH------HHHH-------HHHHHHhhhhhh--HHHHHHH-HHHHHHHHHHHHHHHHH-
Confidence 68899999999999987763322 1111 111113443311 1555554 23222 233333322
Q ss_pred hHHHHHHHHHHHHHHH--HHHHHH
Q 007188 89 AEDVITDLRSELRWVT--DKLEKV 110 (614)
Q Consensus 89 aed~v~~Lr~ELr~~~--~eLEk~ 110 (614)
+ |++|+.-|++.+ +.||+.
T Consensus 64 --e-v~~L~~~L~~~~~~e~LE~~ 84 (106)
T PF03528_consen 64 --E-VAKLQRRLREGQELENLEKS 84 (106)
T ss_dssp --H-HHHHHHHHHHHH--HHHHHH
T ss_pred --H-HHHhcccccccchHHHHHHH
Confidence 2 888888888888 777653
No 141
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=30.54 E-value=1.9e+02 Score=29.86 Aligned_cols=64 Identities=19% Similarity=0.283 Sum_probs=48.9
Q ss_pred HHhhhhhhcHHHHHHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 007188 38 RFEKDLSNTKDEALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKL 107 (614)
Q Consensus 38 ~~~qeL~~~KeeaL~~LlRLKq~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eL 107 (614)
.+=++...++||||++.--+-. -=.+...+.|+...+|.+..|.+|.+.|..|+..|..--+.+
T Consensus 10 ~~L~e~d~~REE~l~lsRei~r------~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~ 73 (204)
T COG2178 10 EVLQEKDKAREEALKLSREIVR------LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELY 73 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3457888999999987543322 234566789999999999999999999999998877655443
No 142
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=30.53 E-value=9.4e+02 Score=29.70 Aligned_cols=9 Identities=0% Similarity=-0.056 Sum_probs=4.2
Q ss_pred cCCceeeec
Q 007188 243 DKAVGKCTA 251 (614)
Q Consensus 243 ~~~~~~~t~ 251 (614)
.||.+....
T Consensus 1031 ~GG~a~L~l 1039 (1163)
T COG1196 1031 GGGTAELEL 1039 (1163)
T ss_pred CCCeeEEEe
Confidence 344544444
No 143
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=30.50 E-value=87 Score=28.02 Aligned_cols=27 Identities=33% Similarity=0.468 Sum_probs=19.9
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 007188 79 VDELEAQLNEAEDVITDLRSELRWVTD 105 (614)
Q Consensus 79 i~ELEaQL~eaed~v~~Lr~ELr~~~~ 105 (614)
.+.||++++.|=|+|+-|+.|+.+.+.
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKe 32 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKE 32 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356888888888888888877655544
No 144
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=30.37 E-value=3e+02 Score=29.77 Aligned_cols=70 Identities=20% Similarity=0.452 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhh
Q 007188 9 ALKKAYADIILNTAREAAARIMASERQALRFEKDLSNTKDEALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNE 88 (614)
Q Consensus 9 ALkkAyadiilntaKEAAaRVm~aERkA~~~~qeL~~~KeeaL~~LlRLKq~~Daki~EaE~~sl~~qrki~ELEaQL~e 88 (614)
-||.+|+++.- -.-+|.++.+ .||-.+|+||..+|. ++-+-||-. ++.-++=+|+.|
T Consensus 186 ~ik~~F~~l~~----------cL~dREvaLl-~EmdkVK~EAmeiL~-------aRqkkAeeL-----krltd~A~~MsE 242 (302)
T PF07139_consen 186 KIKQTFAELQS----------CLMDREVALL-AEMDKVKAEAMEILD-------ARQKKAEEL-----KRLTDRASQMSE 242 (302)
T ss_pred HHHHHHHHHHH----------HHHHHHHHHH-HHHHHHHHHHHHHHH-------HHHHHHHHH-----HHHHHHHhhcCH
Confidence 46666666532 2335555544 578889999987764 333333322 222333344444
Q ss_pred hHHHHHHHHHHHHHH
Q 007188 89 AEDVITDLRSELRWV 103 (614)
Q Consensus 89 aed~v~~Lr~ELr~~ 103 (614)
.| +.+||.|++.-
T Consensus 243 ~Q--l~ELRadIK~f 255 (302)
T PF07139_consen 243 EQ--LAELRADIKHF 255 (302)
T ss_pred HH--HHHHHHHHHHH
Confidence 43 88899988754
No 145
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=30.11 E-value=1.4e+02 Score=34.03 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=21.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 80 DELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 80 ~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
++|.+++.+.|..|.+|..|++++++.++-+..
T Consensus 93 q~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~ 125 (475)
T PRK13729 93 DVLNKQRGDDQRRIEKLGQDNAALAEQVKALGA 125 (475)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 334466666677777777777777777765444
No 146
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=29.93 E-value=6e+02 Score=27.04 Aligned_cols=34 Identities=18% Similarity=0.312 Sum_probs=18.7
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 79 VDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 79 i~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
++.|++-....+..|..-+.||.|.+.-|+.+++
T Consensus 185 l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~ 218 (267)
T PF10234_consen 185 LNNLASDEANLEAKIEKKKQELERNQKRLQSLQS 218 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333344445566666666666666666654
No 147
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=29.89 E-value=6.1e+02 Score=29.24 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=8.5
Q ss_pred hhhHHHHHHHhhhHHHHHHHHH
Q 007188 77 RKVDELEAQLNEAEDVITDLRS 98 (614)
Q Consensus 77 rki~ELEaQL~eaed~v~~Lr~ 98 (614)
-|+++++.+|.+-+++=..|+.
T Consensus 389 ~k~~k~~kel~~~~E~n~~l~k 410 (493)
T KOG0804|consen 389 TKLKKCQKELKEEREENKKLIK 410 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444433333333333
No 148
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=29.85 E-value=4.4e+02 Score=24.18 Aligned_cols=61 Identities=16% Similarity=0.240 Sum_probs=42.6
Q ss_pred HHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 51 LRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 51 L~~LlRLKq~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
..-|+.....+++.+....+..-...+..+..++.-.+.++-|...+.+...++.+|+.++
T Consensus 48 ~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak 108 (139)
T PF05615_consen 48 YERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAK 108 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666777777777777777777777777777777777777777777777777665
No 149
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=29.78 E-value=1.9e+02 Score=27.00 Aligned_cols=38 Identities=32% Similarity=0.455 Sum_probs=25.3
Q ss_pred cHHHHHHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHH
Q 007188 46 TKDEALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAED 91 (614)
Q Consensus 46 ~KeeaL~~LlRLKq~~Daki~EaE~~sl~~qrki~ELEaQL~eaed 91 (614)
|-+||=++|-.|+.+++.- ...++.+.++++.|+++.+
T Consensus 4 Tl~EA~~lLP~l~~~~~~~--------~~~~~~~~~~~~~l~~~~~ 41 (120)
T PF09969_consen 4 TLEEANALLPLLRPILEEI--------RELKAELEELEERLQELED 41 (120)
T ss_pred CHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhccc
Confidence 4578888888888776543 3445566677666666544
No 150
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=29.53 E-value=86 Score=26.45 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=19.5
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 79 VDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 79 i~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
++||++. |+.|+.|+-|++.++.+-+
T Consensus 23 v~EL~~R-------Ia~L~aEI~R~~~~~~~K~ 48 (59)
T PF06698_consen 23 VEELEER-------IALLEAEIARLEAAIAKKS 48 (59)
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 4666666 8888888888888877644
No 151
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=29.52 E-value=1.5e+02 Score=23.90 Aligned_cols=39 Identities=21% Similarity=0.381 Sum_probs=31.5
Q ss_pred HhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 74 TKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 74 ~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
.....+..+.+|+...+.-+..|+.|...+..+++.+++
T Consensus 14 ~~~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~ 52 (80)
T PF04977_consen 14 SGYSRYYQLNQEIAELQKEIEELKKENEELKEEIERLKN 52 (80)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345667788888888888888888888888888888854
No 152
>PF12737 Mating_C: C-terminal domain of homeodomain 1; InterPro: IPR024441 Mating in fungi is controlled by the loci that determine the mating type of an individual, and only individuals with differing mating types can mate. Basidiomycete fungi have evolved a unique mating system, termed tetrapolar or bifactorial incompatibility, in which mating type is determined by two unlinked loci; compatibility at both loci is required for mating to occur. The multi-allelic tetrapolar mating system is considered to be a novel innovation that could have only evolved once, and is thus unique to the mushroom fungi. This domain is found in the C-terminal of some mating-type proteins.
Probab=29.24 E-value=48 Score=36.71 Aligned_cols=28 Identities=50% Similarity=0.642 Sum_probs=21.7
Q ss_pred hhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHH
Q 007188 64 TTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSEL 100 (614)
Q Consensus 64 ki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~EL 100 (614)
.|-++|++ +++|+.+||||| ++.||+||
T Consensus 391 ~l~~~~~~--AK~reL~eLeAq-------~~aL~AEL 418 (419)
T PF12737_consen 391 ALPEAERE--AKRRELEELEAQ-------ARALRAEL 418 (419)
T ss_pred CCCHHHHH--HHHHHHHHHHHH-------HHHHHhhh
Confidence 34455554 788899999999 88888887
No 153
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=29.19 E-value=5.7e+02 Score=25.22 Aligned_cols=28 Identities=18% Similarity=0.181 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 007188 9 ALKKAYADIILNTAREAAARIMASERQA 36 (614)
Q Consensus 9 ALkkAyadiilntaKEAAaRVm~aERkA 36 (614)
.+..||..|+-.|...|..+..+|+.=.
T Consensus 62 s~~~aw~~i~~e~~~~a~~H~~~a~~l~ 89 (251)
T cd07653 62 SSVKAFRSILNEVNDIAGQHELIAENLN 89 (251)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777766666666443
No 154
>PF04576 Zein-binding: Zein-binding; InterPro: IPR007656 This is a family of uncharacterised proteins.
Probab=29.17 E-value=2.7e+02 Score=25.65 Aligned_cols=59 Identities=17% Similarity=0.351 Sum_probs=32.3
Q ss_pred hcHHHHHHHHHHhhhhhchhhhHHHHhhHHhhhhhHHH----HHHHhhhHHHHHHHHHHHHHHHHHH
Q 007188 45 NTKDEALRLLVRVKQMIDSTTKEAEITSLTKQRKVDEL----EAQLNEAEDVITDLRSELRWVTDKL 107 (614)
Q Consensus 45 ~~KeeaL~~LlRLKq~~Daki~EaE~~sl~~qrki~EL----EaQL~eaed~v~~Lr~ELr~~~~eL 107 (614)
.|=+||++|++||..= -...+|..+.-||=++|- ++-+...+|+|...-.|...+..+|
T Consensus 31 sAA~EAMaMI~RLQ~E----KAa~~mEA~Qy~Rm~EEk~~yD~e~ie~L~~~l~~rE~e~~~Le~el 93 (94)
T PF04576_consen 31 SAASEAMAMILRLQEE----KAAVEMEARQYQRMAEEKAEYDQEAIESLKDILYKREKEIQSLEAEL 93 (94)
T ss_pred HHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4568999999999642 133445544444433332 2334444555555555555544444
No 155
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=29.14 E-value=7.5e+02 Score=29.09 Aligned_cols=28 Identities=43% Similarity=0.534 Sum_probs=24.6
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 85 QLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 85 QL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
.+.-++..|.++++++++..+.||++++
T Consensus 140 ~~~k~~~~i~~~~~~y~~~~~~~~~vr~ 167 (611)
T KOG2398|consen 140 ELAKAELKIKEAREEYRSLVAKLEKVRK 167 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788899999999999999999995
No 156
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=28.82 E-value=5.3e+02 Score=25.81 Aligned_cols=18 Identities=28% Similarity=0.490 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007188 93 ITDLRSELRWVTDKLEKV 110 (614)
Q Consensus 93 v~~Lr~ELr~~~~eLEk~ 110 (614)
|..|+++....+.+++.+
T Consensus 161 i~~lks~~~~l~~~~~~~ 178 (190)
T PF05266_consen 161 ISRLKSEAEALKEEIENA 178 (190)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 157
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=28.69 E-value=1.6e+02 Score=32.11 Aligned_cols=37 Identities=14% Similarity=0.337 Sum_probs=32.8
Q ss_pred hhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 76 QRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 76 qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
+++++.|+.|....++....++.|+++.+.+|++++.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 28 EKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4578888999999999999999999999999999965
No 158
>PRK14162 heat shock protein GrpE; Provisional
Probab=28.67 E-value=1e+02 Score=31.04 Aligned_cols=36 Identities=17% Similarity=0.344 Sum_probs=22.1
Q ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 77 RKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 77 rki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
..+++|++++.+++.-+.+|+..+.|+..++|..|+
T Consensus 39 ~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rk 74 (194)
T PRK14162 39 NPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQN 74 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555566666666666666666664
No 159
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=28.53 E-value=6.2e+02 Score=30.57 Aligned_cols=93 Identities=18% Similarity=0.209 Sum_probs=52.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHH
Q 007188 16 DIILNTAREAAARIMASERQALRFEKDLSNTKDEALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITD 95 (614)
Q Consensus 16 diilntaKEAAaRVm~aERkA~~~~qeL~~~KeeaL~~LlRLKq~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~ 95 (614)
|+|....+|=--.=+.-|.|-+.+.++|..++-|.-++---| +.-+-.|.|..-.-..--..|..|.+.|..+|-=...
T Consensus 74 ~~~~~~s~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l-~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~ 152 (769)
T PF05911_consen 74 EAVAKKSKEWEKIKSELEAKLAELSKRLAESAAENSALSKAL-QEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSS 152 (769)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 333343343333334456666666777766666654332222 1111122222212122223467788889999999999
Q ss_pred HHHHHHHHHHHHHH
Q 007188 96 LRSELRWVTDKLEK 109 (614)
Q Consensus 96 Lr~ELr~~~~eLEk 109 (614)
|+-||+-+..|||-
T Consensus 153 Lkye~~~~~kelei 166 (769)
T PF05911_consen 153 LKYELHVLSKELEI 166 (769)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999974
No 160
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=28.50 E-value=5.6e+02 Score=26.56 Aligned_cols=78 Identities=21% Similarity=0.315 Sum_probs=50.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhcHHH-HHHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhh
Q 007188 11 KKAYADIILNTAREAAARIMASERQALRFEKDLSNTKDE-ALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEA 89 (614)
Q Consensus 11 kkAyadiilntaKEAAaRVm~aERkA~~~~qeL~~~Kee-aL~~LlRLKq~~Daki~EaE~~sl~~qrki~ELEaQL~ea 89 (614)
..-|.++|..+..+.--||-.+.+|.+.-+.+.....+. ...-|--|-.-|...+.++| .|-..-+|+|.++.+.++
T Consensus 81 E~e~~~~L~~~i~d~drrI~~~k~RL~~~~~~~~~~~~~~~~~~i~~l~~~I~~ll~~aE--~LGeeG~VdeA~~~~~~~ 158 (254)
T PF03194_consen 81 EREFLRYLQRLIRDCDRRIERAKERLEQTQEEQAKEADEEKAEKIDELDEKIGELLKEAE--ELGEEGDVDEAQKLMEEV 158 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccchhhhHHHHHHHHHHHHHHHHHHHH--HHHHCCCHHHHHHHHHHH
Confidence 345667777777888888888887777666655444332 24444555555666666655 567777777777766554
Q ss_pred H
Q 007188 90 E 90 (614)
Q Consensus 90 e 90 (614)
+
T Consensus 159 e 159 (254)
T PF03194_consen 159 E 159 (254)
T ss_pred H
Confidence 3
No 161
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=28.34 E-value=5e+02 Score=29.89 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=9.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHH
Q 007188 80 DELEAQLNEAEDVITDLRSEL 100 (614)
Q Consensus 80 ~ELEaQL~eaed~v~~Lr~EL 100 (614)
++||.|+...++.+.+|...|
T Consensus 444 ~~le~qI~~Le~kl~~l~~~l 464 (489)
T KOG3684|consen 444 EELEKQIDTLESKLEALTASL 464 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455444444444444444
No 162
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=28.29 E-value=1.3e+02 Score=27.44 Aligned_cols=36 Identities=22% Similarity=0.492 Sum_probs=27.7
Q ss_pred hhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 76 QRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 76 qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
.++++.|+.++...+..+..++.++......|+.+.
T Consensus 100 ~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 100 DKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQ 135 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888888888877777777765
No 163
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=28.25 E-value=9.1e+02 Score=27.30 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 87 NEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 87 ~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
...++.|..||.||.+++.+|..++.
T Consensus 305 ~~L~~~vesL~~ELe~~K~el~~lke 330 (522)
T PF05701_consen 305 SSLRASVESLRSELEKEKEELERLKE 330 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666667777777777766664
No 164
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=28.13 E-value=4.9e+02 Score=24.11 Aligned_cols=42 Identities=24% Similarity=0.317 Sum_probs=17.9
Q ss_pred hHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 007188 66 KEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKL 107 (614)
Q Consensus 66 ~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eL 107 (614)
.++|......+.+...|+.++..++..+..++.|+++...-+
T Consensus 83 ~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~ 124 (151)
T PF11559_consen 83 EELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQL 124 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444444444444444333
No 165
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=28.03 E-value=77 Score=29.90 Aligned_cols=39 Identities=23% Similarity=0.422 Sum_probs=26.4
Q ss_pred hHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 007188 66 KEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDK 106 (614)
Q Consensus 66 ~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~e 106 (614)
...|+..+... |.+|.+||.+.+.-+..|+.||..+...
T Consensus 70 s~eel~~ld~e--i~~L~~el~~l~~~~k~l~~eL~~L~~~ 108 (169)
T PF07106_consen 70 SPEELAELDAE--IKELREELAELKKEVKSLEAELASLSSE 108 (169)
T ss_pred CchhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34555555544 8888888777777777777777765543
No 166
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=27.95 E-value=2e+02 Score=28.36 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=20.6
Q ss_pred hhHHhhhhhHHHHHHHhhhHHHHHH
Q 007188 71 TSLTKQRKVDELEAQLNEAEDVITD 95 (614)
Q Consensus 71 ~sl~~qrki~ELEaQL~eaed~v~~ 95 (614)
+.|.|+|.|+|+=++|+-.|.-|+.
T Consensus 119 qll~hr~e~ee~~~~l~~le~~~~~ 143 (175)
T PRK13182 119 QLLQHRREMEEMLERLQKLEARLKK 143 (175)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999998888777764
No 167
>PHA02562 46 endonuclease subunit; Provisional
Probab=27.89 E-value=8.2e+02 Score=26.69 Aligned_cols=46 Identities=13% Similarity=0.247 Sum_probs=29.1
Q ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCc
Q 007188 77 RKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKNNPLQPVNGQT 122 (614)
Q Consensus 77 rki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~~~~qp~n~q~ 122 (614)
..++++++.|..++.-+..++.++......++....+..+|.-++.
T Consensus 248 ~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~ 293 (562)
T PHA02562 248 MDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQ 293 (562)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCc
Confidence 4556666667777777777777777777776666544455544433
No 168
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=27.82 E-value=1.1e+03 Score=29.77 Aligned_cols=36 Identities=28% Similarity=0.490 Sum_probs=22.4
Q ss_pred hhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 76 QRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 76 qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
..|++-|+.+...+|.++..|++|++.+..++..+.
T Consensus 400 e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ 435 (1074)
T KOG0250|consen 400 ENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEE 435 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 345556666666666667777777666666555544
No 169
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=27.76 E-value=1.6e+02 Score=23.33 Aligned_cols=31 Identities=29% Similarity=0.464 Sum_probs=20.9
Q ss_pred hhhhhHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 007188 75 KQRKVDELEAQLNEAEDVITDLRSELRWVTD 105 (614)
Q Consensus 75 ~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~ 105 (614)
.+..+++||.++...+.-...|+.++..+..
T Consensus 23 kk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 23 KKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445677788877777777777777666544
No 170
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=27.54 E-value=1.2e+02 Score=27.16 Aligned_cols=35 Identities=14% Similarity=0.429 Sum_probs=29.6
Q ss_pred hhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 007188 75 KQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEK 109 (614)
Q Consensus 75 ~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk 109 (614)
=.++++.|+.++...+..+..|+.++..+...|++
T Consensus 91 l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~~ 125 (126)
T TIGR00293 91 LKKRIEELEKAIEKLQEALAELASRAQQLEQEAQQ 125 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35788999999999999999999988888888764
No 171
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=27.53 E-value=4.7e+02 Score=31.78 Aligned_cols=97 Identities=25% Similarity=0.324 Sum_probs=57.0
Q ss_pred HHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHhhhhh-------hcHHHHHHHHHH-h----hhhhchhhhHHHHhh--
Q 007188 8 VALKKAYAD-IILNTAREAAARIMASERQALRFEKDLS-------NTKDEALRLLVR-V----KQMIDSTTKEAEITS-- 72 (614)
Q Consensus 8 ~ALkkAyad-iilntaKEAAaRVm~aERkA~~~~qeL~-------~~KeeaL~~LlR-L----Kq~~Daki~EaE~~s-- 72 (614)
.+++.+-+. -|...+-|+--||-..|||...+-.|-- +.|++--+.|++ + -.||-.-..|-|..|
T Consensus 389 e~~~~k~~~s~~ssl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ 468 (961)
T KOG4673|consen 389 EDLKRKSNESEVSSLREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKK 468 (961)
T ss_pred HHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHH
Confidence 444433332 3455677888899999999876654443 345555556666 2 234444445666544
Q ss_pred -HHhhhhhHHHHHHHhhhHH-------HHHHHHHHHHHHH
Q 007188 73 -LTKQRKVDELEAQLNEAED-------VITDLRSELRWVT 104 (614)
Q Consensus 73 -l~~qrki~ELEaQL~eaed-------~v~~Lr~ELr~~~ 104 (614)
|.|-.-|.-|-||..+++. .|..|..|+.++.
T Consensus 469 ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk 508 (961)
T KOG4673|consen 469 QLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLK 508 (961)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHH
Confidence 4444567777777777774 4555566655543
No 172
>PF15456 Uds1: Up-regulated During Septation
Probab=27.28 E-value=2.7e+02 Score=26.20 Aligned_cols=81 Identities=26% Similarity=0.304 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHHHHhhhhhc-------hhhhHHHHhhHHhhhhh
Q 007188 7 MVALKKAYADIILNTAREAAARIMASERQALRFEKDLSNTKDEALRLLVRVKQMID-------STTKEAEITSLTKQRKV 79 (614)
Q Consensus 7 l~ALkkAyadiilntaKEAAaRVm~aERkA~~~~qeL~~~KeeaL~~LlRLKq~~D-------aki~EaE~~sl~~qrki 79 (614)
...|||-+.- |..=-+++-|=++.|+|-. +|...|.|+--.-- .-+.++|-....-.+||
T Consensus 24 Ve~LKkEl~~--L~~R~~~lr~kl~le~k~R-----------dAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ 90 (124)
T PF15456_consen 24 VEELKKELRS--LDSRLEYLRRKLALESKIR-----------DAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKC 90 (124)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhH
Confidence 3667776542 4444445555555555533 45566666632222 23566777777778999
Q ss_pred HHHHHHHhhhHHHHHHHHHHH
Q 007188 80 DELEAQLNEAEDVITDLRSEL 100 (614)
Q Consensus 80 ~ELEaQL~eaed~v~~Lr~EL 100 (614)
+|+..+|-.+|+=..++|.-|
T Consensus 91 ee~~~eL~~le~R~~~~~~rL 111 (124)
T PF15456_consen 91 EELAQELWKLENRLAEVRQRL 111 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888877544
No 173
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=27.21 E-value=1.5e+02 Score=26.22 Aligned_cols=35 Identities=17% Similarity=0.433 Sum_probs=21.9
Q ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 77 RKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 77 rki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
.+++.|++.+...+.-+.+|..++...+.+|.+++
T Consensus 70 ~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 70 ERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666666666666666666666666666654
No 174
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=26.84 E-value=5.3e+02 Score=28.10 Aligned_cols=84 Identities=24% Similarity=0.281 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhhhhhhcHHH------HHHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHH
Q 007188 30 MASERQALRFEKDLSNTKDE------ALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWV 103 (614)
Q Consensus 30 m~aERkA~~~~qeL~~~Kee------aL~~LlRLKq~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~ 103 (614)
--||+|+-.|+-+|.-++|. +|-.+=|=..-.-.+++|.|-....++.|+..--++-.-.|.-+..|+.|=-|+
T Consensus 154 skaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LL 233 (305)
T PF14915_consen 154 SKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLL 233 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999988864 233444544556678899999989999998888888888888899999999999
Q ss_pred HHHHHHHhcC
Q 007188 104 TDKLEKVKNN 113 (614)
Q Consensus 104 ~~eLEk~~~~ 113 (614)
+..|+-+.+.
T Consensus 234 rQQLddA~~K 243 (305)
T PF14915_consen 234 RQQLDDAHNK 243 (305)
T ss_pred HHHHHHHHHH
Confidence 9999998863
No 175
>PRK14140 heat shock protein GrpE; Provisional
Probab=26.83 E-value=1.1e+02 Score=30.68 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=20.6
Q ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 78 KVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 78 ki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
-|++|++++.+++.-+.+|+.-|.|+..+++..|+
T Consensus 38 ~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rk 72 (191)
T PRK14140 38 LLDEEQAKIAELEAKLDELEERYLRLQADFENYKR 72 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555566666666666666666653
No 176
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=26.81 E-value=1.3e+02 Score=28.32 Aligned_cols=31 Identities=16% Similarity=0.302 Sum_probs=12.1
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 007188 79 VDELEAQLNEAEDVITDLRSELRWVTDKLEK 109 (614)
Q Consensus 79 i~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk 109 (614)
|+..|+-|..-...+..|+...+....++++
T Consensus 50 ~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~ 80 (160)
T PF13094_consen 50 IEKEEAALERDYEYLQELEKNAKALEREREE 80 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444333333333333
No 177
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=26.67 E-value=7.7e+02 Score=31.13 Aligned_cols=109 Identities=18% Similarity=0.311 Sum_probs=72.8
Q ss_pred CcchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHHHHhh----hhhchhhhHHHHhhHH--
Q 007188 1 MAESEKMVALKKAYADIILNTAREAAARIMASERQALRFEKDLSNTKDEALRLLVRVK----QMIDSTTKEAEITSLT-- 74 (614)
Q Consensus 1 Maese~l~ALkkAyadiilntaKEAAaRVm~aERkA~~~~qeL~~~KeeaL~~LlRLK----q~~Daki~EaE~~sl~-- 74 (614)
|--+|.|+-+..|..=-|...-||||-|-| |||-+-+..=-.-..+|-+-.|..|+ ++++.+-+-+++.-+.
T Consensus 156 MKp~EILsMvEEAAGTrmye~kKe~A~kti--ekKetKlkEi~~lL~eeI~P~l~KLR~Ers~~lE~q~~~~dle~l~R~ 233 (1174)
T KOG0933|consen 156 MKPSEILSMVEEAAGTRMYENKKEAAEKTI--EKKETKLKEINTLLREEILPRLEKLREERSQYLEYQKINRDLERLSRI 233 (1174)
T ss_pred CCcHHHHHHHHHhhcchhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788888888888888888888888877 66666555444444455555555553 5666664444443322
Q ss_pred --------hhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 75 --------KQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 75 --------~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
.-.+.+.+..++++.++.|+.|.+++.....+++-+-
T Consensus 234 ~ia~eY~~~~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le 278 (1174)
T KOG0933|consen 234 CIAYEYLQAEEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLE 278 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 2345567888899999999998887776666655443
No 178
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=26.49 E-value=1.1e+02 Score=29.82 Aligned_cols=29 Identities=28% Similarity=0.426 Sum_probs=13.5
Q ss_pred hhhhHHHHHHHhhhHHHHHHHHHHHHHHH
Q 007188 76 QRKVDELEAQLNEAEDVITDLRSELRWVT 104 (614)
Q Consensus 76 qrki~ELEaQL~eaed~v~~Lr~ELr~~~ 104 (614)
+.+|..|+..|.+-+..+..|+.|+.-.+
T Consensus 129 ~~~~~~l~~~l~ek~k~~e~l~DE~~~L~ 157 (194)
T PF08614_consen 129 EEKIKDLEEELKEKNKANEILQDELQALQ 157 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 179
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=26.35 E-value=4.2e+02 Score=30.03 Aligned_cols=36 Identities=22% Similarity=0.468 Sum_probs=24.6
Q ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 77 RKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 77 rki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
.++++++++..+..+.|..||.+-.+++..|++++.
T Consensus 390 e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~ 425 (569)
T PRK04778 390 KQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRN 425 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666677777777777777777777663
No 180
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=26.23 E-value=2.3e+02 Score=33.63 Aligned_cols=61 Identities=18% Similarity=0.311 Sum_probs=30.6
Q ss_pred HHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 51 LRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 51 L~~LlRLKq~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
|+-+.|++...--.+.|.|..--.-+..|+|+--+.+|.+..|-.-+.||-+++.+.|+++
T Consensus 81 ~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq 141 (907)
T KOG2264|consen 81 LREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQ 141 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHH
Confidence 6666777766655555555443333444555544444444444444444444444444443
No 181
>PRK10884 SH3 domain-containing protein; Provisional
Probab=26.20 E-value=2.1e+02 Score=28.91 Aligned_cols=36 Identities=17% Similarity=0.389 Sum_probs=29.9
Q ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 77 RKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 77 rki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
.+..||+..+..+++.+.+|+.|.++++.+|+.+++
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~ 153 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQK 153 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556678888888888898899999999988888775
No 182
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=26.17 E-value=2.2e+02 Score=27.40 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 88 EAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 88 eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
..+.-|..|+.||..+..+++.+++
T Consensus 158 ~~~~ei~~lk~el~~~~~~~~~Lkk 182 (192)
T PF05529_consen 158 KLSEEIEKLKKELEKKEKEIEALKK 182 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445577777777777777777664
No 183
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=25.79 E-value=5.3e+02 Score=23.76 Aligned_cols=36 Identities=22% Similarity=0.417 Sum_probs=27.3
Q ss_pred hhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 76 QRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 76 qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
...|..|.+++..++..|..|+.++..++..|+...
T Consensus 58 ~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e 93 (132)
T PF07926_consen 58 IKELQQLREELQELQQEINELKAEAESAKAELEESE 93 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777888888888888888888888877655
No 184
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=25.58 E-value=1.4e+02 Score=32.17 Aligned_cols=57 Identities=18% Similarity=0.290 Sum_probs=41.8
Q ss_pred hhhchhhhHHHHhhHHhhhh--------------hHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 007188 59 QMIDSTTKEAEITSLTKQRK--------------VDELEAQLNEAEDVITDLRSELRWVTDKLEKVKNNPL 115 (614)
Q Consensus 59 q~~Daki~EaE~~sl~~qrk--------------i~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~~~~ 115 (614)
|...-+|.+.|+...-|... ++||.+-+.+.+.+|-=|+.+|++.+++++.+.++.-
T Consensus 232 q~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~ 302 (330)
T KOG2991|consen 232 QASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLE 302 (330)
T ss_pred hhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777766664433332 5667777888888899999999999999999887654
No 185
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=25.10 E-value=6.7e+02 Score=28.17 Aligned_cols=31 Identities=19% Similarity=0.399 Sum_probs=15.0
Q ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 007188 78 KVDELEAQLNEAEDVITDLRSELRWVTDKLE 108 (614)
Q Consensus 78 ki~ELEaQL~eaed~v~~Lr~ELr~~~~eLE 108 (614)
.+++|++++.+.+.+..+...-..-..++|+
T Consensus 413 E~~~l~~ei~~l~~~l~~~~~~~~~i~~eL~ 443 (445)
T cd00187 413 ELKELEAEIEDLEKILASEERPKDLWKEELD 443 (445)
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 3445555555555555444444444444444
No 186
>PRK14160 heat shock protein GrpE; Provisional
Probab=25.06 E-value=1.7e+02 Score=29.89 Aligned_cols=38 Identities=11% Similarity=0.240 Sum_probs=29.2
Q ss_pred hhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 75 KQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 75 ~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
.+..++.|++++..++.-+.+|+..+.|+..+.+..|+
T Consensus 59 l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RK 96 (211)
T PRK14160 59 LKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRK 96 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777788888888888888888887775
No 187
>PRK03918 chromosome segregation protein; Provisional
Probab=24.92 E-value=7.2e+02 Score=28.84 Aligned_cols=32 Identities=19% Similarity=0.385 Sum_probs=17.4
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 81 ELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 81 ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
.|+.++...+.-+..|..||.....+|+++..
T Consensus 249 ~l~~~~~~l~~~i~~l~~el~~l~~~l~~l~~ 280 (880)
T PRK03918 249 SLEGSKRKLEEKIRELEERIEELKKEIEELEE 280 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555666666666666654
No 188
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=24.82 E-value=24 Score=41.66 Aligned_cols=48 Identities=23% Similarity=0.331 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHHHHhhhhhchhhhHHH
Q 007188 21 TAREAAARIMASERQALRFEKDLSNTKDEALRLLVRVKQMIDSTTKEAE 69 (614)
Q Consensus 21 taKEAAaRVm~aERkA~~~~qeL~~~KeeaL~~LlRLKq~~Daki~EaE 69 (614)
.-.++...+.++||++..++.+|.-+. .++..+.|.+...++...|+.
T Consensus 596 ~~~~~~~~~~~~e~r~~~l~~elee~~-~~~~~a~r~rk~aE~el~e~~ 643 (859)
T PF01576_consen 596 AREELREQLAVSERRLRALQAELEELR-EALEQAERARKQAESELDELQ 643 (859)
T ss_dssp -------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 445677889999999999999999987 678899999998888876654
No 189
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=24.78 E-value=1.3e+02 Score=32.71 Aligned_cols=34 Identities=32% Similarity=0.583 Sum_probs=27.5
Q ss_pred HHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 007188 73 LTKQRKVDELEAQLNEAEDVITDLRSELRWVTDK 106 (614)
Q Consensus 73 l~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~e 106 (614)
...|+||++||++|++++.-+.-++..|+-+++.
T Consensus 178 ~LLqkk~~~l~~~l~~~~~eL~~~~k~L~faqek 211 (323)
T PF08537_consen 178 ILLQKKIDELEERLNDLEKELEITKKDLKFAQEK 211 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999998888888888887766544
No 190
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=24.76 E-value=6.7e+02 Score=29.29 Aligned_cols=46 Identities=26% Similarity=0.330 Sum_probs=26.7
Q ss_pred hHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 66 KEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 66 ~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
-+.|..--.-.++|.-||..+...-.=+..|+.+|.+++..|++-+
T Consensus 151 ~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Et 196 (546)
T KOG0977|consen 151 SELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDET 196 (546)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3333333344566666777666666666666666666666555544
No 191
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=24.47 E-value=8e+02 Score=25.35 Aligned_cols=87 Identities=13% Similarity=0.275 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcHHHHHHHHHHhhhhhchhhhHHHHhhHH-hh----hh-------hHHHHHHHhhhHH
Q 007188 24 EAAARIMASERQALRFEKDLSNTKDEALRLLVRVKQMIDSTTKEAEITSLT-KQ----RK-------VDELEAQLNEAED 91 (614)
Q Consensus 24 EAAaRVm~aERkA~~~~qeL~~~KeeaL~~LlRLKq~~Daki~EaE~~sl~-~q----rk-------i~ELEaQL~eaed 91 (614)
++=..+.--|+.+..+-+++...++|. ..|--++..|+.=..|. .... +- .- |..+++.....++
T Consensus 5 ~ir~K~~~lek~k~~i~~e~~~~e~ee-~~L~e~~kE~~~L~~Er--~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~ 81 (230)
T PF10146_consen 5 EIRNKTLELEKLKNEILQEVESLENEE-KCLEEYRKEMEELLQER--MAHVEELRQINQDINTLENIIKQAESERNKRQE 81 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666777777778887777777 45555555555433221 1111 11 11 3444555566777
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q 007188 92 VITDLRSELRWVTDKLEKVKNN 113 (614)
Q Consensus 92 ~v~~Lr~ELr~~~~eLEk~~~~ 113 (614)
.|..|..|+..+.++...+|..
T Consensus 82 ~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 82 KIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888999999999999865
No 192
>PF12269 zf-CpG_bind_C: CpG binding protein zinc finger C terminal domain; InterPro: IPR022056 This domain family is found in eukaryotes, and is approximately 240 amino acids in length. This domain is the zinc finger domain of a CpG binding DNA methyltransferase protein. It contains a CxxC motif which forms the zinc finger and binds to DNA.
Probab=24.44 E-value=2.1e+02 Score=29.85 Aligned_cols=66 Identities=8% Similarity=0.245 Sum_probs=49.8
Q ss_pred HHhhhhhchhhhHHHHhhHH----hhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 007188 55 VRVKQMIDSTTKEAEITSLT----KQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKNNPLQPVNG 120 (614)
Q Consensus 55 lRLKq~~Daki~EaE~~sl~----~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~~~~qp~n~ 120 (614)
.||.+++--+|.|--..-.. -++++++++.+...+++.+.+|-.--.++...+++++.-.+.+...
T Consensus 3 ~RI~eILPqRIQEw~~~p~~A~E~~r~~Le~Ir~kq~~v~~~l~eLe~~~~el~~~i~~~k~~~~~~~~~ 72 (236)
T PF12269_consen 3 NRIYEILPQRIQEWQLSPCVAEEQNRKLLEEIRKKQQKVRNRLQELEKRFKELEAIIARAKQFTVDQDEE 72 (236)
T ss_pred hHHHHHChHHHHHhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccc
Confidence 47888888888875544322 3788899999999999999988888888888888887655555433
No 193
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.25 E-value=1.4e+02 Score=26.69 Aligned_cols=28 Identities=36% Similarity=0.489 Sum_probs=21.6
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 007188 79 VDELEAQLNEAEDVITDLRSELRWVTDK 106 (614)
Q Consensus 79 i~ELEaQL~eaed~v~~Lr~ELr~~~~e 106 (614)
.+.|||+++.|=|+|+=|+.|+.+++.+
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEieELKEk 33 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIEELKEK 33 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999888877655543
No 194
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=23.99 E-value=4.2e+02 Score=21.95 Aligned_cols=34 Identities=18% Similarity=0.318 Sum_probs=18.0
Q ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 007188 77 RKVDELEAQLNEAEDVITDLRSELRWVTDKLEKV 110 (614)
Q Consensus 77 rki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (614)
..|++++.++..++..|..+|.+|..+.-+++.+
T Consensus 59 ~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~ 92 (123)
T PF02050_consen 59 QAIQQQQQELERLEQEVEQAREELQEARRERKKL 92 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555554443
No 195
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=23.70 E-value=7.8e+02 Score=24.98 Aligned_cols=13 Identities=23% Similarity=0.409 Sum_probs=5.6
Q ss_pred HHhhhhhhcHHHH
Q 007188 38 RFEKDLSNTKDEA 50 (614)
Q Consensus 38 ~~~qeL~~~Keea 50 (614)
.|++++...+++|
T Consensus 93 Gy~eG~~~G~~e~ 105 (255)
T TIGR03825 93 GYEAGFQAGESEA 105 (255)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 196
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=23.56 E-value=2e+02 Score=33.93 Aligned_cols=16 Identities=19% Similarity=0.426 Sum_probs=10.4
Q ss_pred HHHhhhhhcCCCCCCC
Q 007188 212 IRALESNLLNGKLPQL 227 (614)
Q Consensus 212 IrAle~nl~~g~l~~s 227 (614)
=|+...-++.+++|.-
T Consensus 579 s~~A~e~f~~~~iPv~ 594 (652)
T COG2433 579 SHAAAEEFFKNEIPVL 594 (652)
T ss_pred chHHHHHHhhcCCcee
Confidence 4666667777777654
No 197
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=23.54 E-value=5.9e+02 Score=32.56 Aligned_cols=48 Identities=27% Similarity=0.338 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHH
Q 007188 4 SEKMVALKKAYADIILNTAREAAARIMASERQALRFEKDLSNTKDEALRL 53 (614)
Q Consensus 4 se~l~ALkkAyadiilntaKEAAaRVm~aERkA~~~~qeL~~~KeeaL~~ 53 (614)
-.|+.-|+++-++++-+.++| |.-+ --||+-..+++++.-...|-=++
T Consensus 646 l~k~~el~r~~~e~~~~~ek~-~~e~-~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 646 LLKVEELKRENQERISDSEKE-ALEI-KLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566899999999999998 3333 34777777888777666554443
No 198
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=23.45 E-value=5.3e+02 Score=29.53 Aligned_cols=33 Identities=15% Similarity=0.260 Sum_probs=13.6
Q ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 007188 77 RKVDELEAQLNEAEDVITDLRSELRWVTDKLEK 109 (614)
Q Consensus 77 rki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk 109 (614)
++|.++++++++.+.-+..|+.++.....++++
T Consensus 435 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 467 (650)
T TIGR03185 435 NELFRSEAEIEELLRQLETLKEAIEALRKTLDE 467 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443333
No 199
>PRK14148 heat shock protein GrpE; Provisional
Probab=23.34 E-value=1.5e+02 Score=29.89 Aligned_cols=34 Identities=15% Similarity=0.358 Sum_probs=19.9
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 79 VDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 79 i~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
+++|++++.+++.-+.+|+..+.|+..+.|..|+
T Consensus 42 ~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rK 75 (195)
T PRK14148 42 LERAKDTIKELEDSCDQFKDEALRAKAEMENIRK 75 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555566666666666666666653
No 200
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=23.18 E-value=2.3e+02 Score=23.90 Aligned_cols=24 Identities=21% Similarity=0.482 Sum_probs=10.1
Q ss_pred hhHHHHHHHhhhHHHHHHHHHHHH
Q 007188 78 KVDELEAQLNEAEDVITDLRSELR 101 (614)
Q Consensus 78 ki~ELEaQL~eaed~v~~Lr~ELr 101 (614)
||++|..+++....-|..|..+..
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~ 27 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVN 27 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444433333333
No 201
>PRK14150 heat shock protein GrpE; Provisional
Probab=23.11 E-value=1.4e+02 Score=29.70 Aligned_cols=34 Identities=29% Similarity=0.487 Sum_probs=24.5
Q ss_pred hhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 76 QRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 76 qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
+.+|++|+++|.+++. +|+..+.|+..+.|..|+
T Consensus 40 ~~~i~~l~~~l~~~~~---~~kd~~lR~~AefeN~rk 73 (193)
T PRK14150 40 DARIAELEAQLAEAQA---EERDSVLRARAEVENIRR 73 (193)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3467888888887765 667777777777777764
No 202
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=22.92 E-value=1.4e+02 Score=30.64 Aligned_cols=37 Identities=30% Similarity=0.438 Sum_probs=31.8
Q ss_pred HHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 007188 73 LTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEK 109 (614)
Q Consensus 73 l~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk 109 (614)
...-..++||+.+|..|-.+|..+|..|+.+...+-.
T Consensus 63 ~~a~~~v~el~~~l~~a~~~~~~~R~~L~~~~~~~~~ 99 (291)
T PF10475_consen 63 FQAMSSVQELQDELEEALVICKNLRRNLKSADENLTK 99 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4456789999999999999999999999999887544
No 203
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=22.90 E-value=1.3e+03 Score=27.45 Aligned_cols=101 Identities=27% Similarity=0.410 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHH----HHHhhhhhchhhhHHHHhhHHhhhhhHHHH
Q 007188 8 VALKKAYADIILNTAREAAARIMASERQALRFEKDLSNTKDEALRL----LVRVKQMIDSTTKEAEITSLTKQRKVDELE 83 (614)
Q Consensus 8 ~ALkkAyadiilntaKEAAaRVm~aERkA~~~~qeL~~~KeeaL~~----LlRLKq~~Daki~EaE~~sl~~qrki~ELE 83 (614)
.+.|.|--.+|+-----|=.||..+||.+..+.+.|..+....=.. +=.+...+++ +|-|+..|.. -|+-++
T Consensus 230 ~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~--kd~~i~~L~~--di~~~~ 305 (629)
T KOG0963|consen 230 VAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQ--KDSEIAQLSN--DIERLE 305 (629)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhH--HHHHHHHHHH--HHHHHH
Confidence 4455544444444344577899999999999999998776543221 1111111222 3444443321 222222
Q ss_pred HHHhhh----HHHHHHHHHHHHHHHHHHHHHhc
Q 007188 84 AQLNEA----EDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 84 aQL~ea----ed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
+-|.++ -..|.+|-.+|.....+||++.+
T Consensus 306 ~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~ 338 (629)
T KOG0963|consen 306 ASLVEEREKHKAQISALEKELKAKISELEELKE 338 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222 12377777777777777777775
No 204
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=22.76 E-value=5.1e+02 Score=25.73 Aligned_cols=45 Identities=13% Similarity=0.207 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHHHHhhhhhchhhhHHH
Q 007188 22 AREAAARIMASERQALRFEKDLSNTKDEALRLLVRVKQMIDSTTKEAE 69 (614)
Q Consensus 22 aKEAAaRVm~aERkA~~~~qeL~~~KeeaL~~LlRLKq~~Daki~EaE 69 (614)
.++|-.+++.||+.+..+..+- ..+|-..+-+-+.--+.++.+||
T Consensus 151 v~~a~~~~~~a~q~~~~~~~~a---e~~~~~~~~~a~~~a~~~~~~Ae 195 (261)
T TIGR01933 151 VKEAFDDVIIAREDEERYINEA---EAYANEVVPKARGDAQRIIEEAR 195 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777776665443322 33444444444443344444444
No 205
>PRK11166 chemotaxis regulator CheZ; Provisional
Probab=22.68 E-value=4.8e+02 Score=26.89 Aligned_cols=57 Identities=19% Similarity=0.245 Sum_probs=44.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHHHHhhhhhchhhhHHHHhhHHhh
Q 007188 17 IILNTAREAAARIMASERQALRFEKDLSNTKDEALRLLVRVKQMIDSTTKEAEITSLTKQ 76 (614)
Q Consensus 17 iilntaKEAAaRVm~aERkA~~~~qeL~~~KeeaL~~LlRLKq~~Daki~EaE~~sl~~q 76 (614)
.|..++.+||-|||-+=-+|.-++.+|. ++|-++.=|+.+.|...+.-.|...|.++
T Consensus 57 YVi~~TEqAA~rtLnaVE~a~p~~d~l~---~~a~~L~~~w~~l~~~~~~~~e~~~L~~~ 113 (214)
T PRK11166 57 YVAQMTEQAAERVLNAVEAAQPHQDQLE---KEAKALDARWDEWFANPIELADARELVTD 113 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4788999999999999888888888775 46777777778888877776777777655
No 206
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=22.61 E-value=1.6e+02 Score=30.84 Aligned_cols=36 Identities=19% Similarity=0.358 Sum_probs=31.7
Q ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 77 RKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 77 rki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
.+++.|++|+.+.+.-..+++.|+...+.+|++.+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (364)
T TIGR01242 6 VRIRKLEDEKRSLEKEKIRLERELERLRSEIERLRS 41 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 578999999999999999999999999999987764
No 207
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=22.57 E-value=1.1e+03 Score=27.19 Aligned_cols=96 Identities=23% Similarity=0.238 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHH---------hhHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHHHHhhhhhchhhhHHHHhhHHh-h
Q 007188 7 MVALKKAYADIIL---------NTAREAAARIMASERQALRFEKDLSNTKDEALRLLVRVKQMIDSTTKEAEITSLTK-Q 76 (614)
Q Consensus 7 l~ALkkAyadiil---------ntaKEAAaRVm~aERkA~~~~qeL~~~KeeaL~~LlRLKq~~Daki~EaE~~sl~~-q 76 (614)
.+|||+||-+-|. |..-||--|--..|= ..++.||...-|+--.-+|-.-|.|.+ .|||..-|.+ |
T Consensus 387 IEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleel--qsvqRELeVLSEQYSQKCLEnahLaqa--lEaerqaLRqCQ 462 (593)
T KOG4807|consen 387 IEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEEL--QSVQRELEVLSEQYSQKCLENAHLAQA--LEAERQALRQCQ 462 (593)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 3899999988774 455566655555543 345666666666666677777777644 6777776665 6
Q ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 007188 77 RKVDELEAQLNEAEDVITDLRSELRWVTDKLEK 109 (614)
Q Consensus 77 rki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk 109 (614)
|.-+||-|--+|. -..|-+|+-++++.|--
T Consensus 463 rEnQELnaHNQEL---nnRLaaEItrLRtlltg 492 (593)
T KOG4807|consen 463 RENQELNAHNQEL---NNRLAAEITRLRTLLTG 492 (593)
T ss_pred HhhHHHHHHHHHH---hhHHHHHHHHHHHHhcc
Confidence 7778887765554 45677788888887743
No 208
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=22.54 E-value=2e+02 Score=25.69 Aligned_cols=44 Identities=23% Similarity=0.336 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhh
Q 007188 46 TKDEALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEA 89 (614)
Q Consensus 46 ~KeeaL~~LlRLKq~~Daki~EaE~~sl~~qrki~ELEaQL~ea 89 (614)
.+++|+.-|--=...++..|+.-|...-.-+.++.+++.+|.++
T Consensus 64 ~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 64 DKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 209
>PRK14158 heat shock protein GrpE; Provisional
Probab=22.44 E-value=1.6e+02 Score=29.73 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=21.8
Q ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 78 KVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 78 ki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
.+++|+++|.+++.-+.+|+..+.|++.++|..|+
T Consensus 41 ~~~~le~~l~~le~e~~el~d~~lR~~AefeN~Rk 75 (194)
T PRK14158 41 RIKELEEALAAKEAEAAANWDKYLRERADLENYRK 75 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555566666666666666666664
No 210
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=22.37 E-value=3.6e+02 Score=24.66 Aligned_cols=43 Identities=35% Similarity=0.413 Sum_probs=27.4
Q ss_pred HHHHHhhHHHHHHHHHHH-H-----HHHHHHhhhhhhcHHHHHHHHHHh
Q 007188 15 ADIILNTAREAAARIMAS-E-----RQALRFEKDLSNTKDEALRLLVRV 57 (614)
Q Consensus 15 adiilntaKEAAaRVm~a-E-----RkA~~~~qeL~~~KeeaL~~LlRL 57 (614)
|+-||.-|++-|.+|+.. + .++..|++++....+++...+..+
T Consensus 15 A~~il~~A~~~a~~i~~~A~~~~e~~~~~g~~~G~~~g~~e~~~~~~~~ 63 (166)
T TIGR02499 15 AQAILAAARQRAEAILADAEEEAEASRQLGYEQGLEQFWQEAAAQLAEW 63 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666655542 2 245578888888888887777654
No 211
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=22.36 E-value=5.3e+02 Score=30.69 Aligned_cols=38 Identities=18% Similarity=0.301 Sum_probs=29.7
Q ss_pred hhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 75 KQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 75 ~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
++++.+.+++-..+|+.++...+.|.+.+-.+|.+.++
T Consensus 561 ~~~~~~~~~~~~~~a~~~l~~a~~~~~~~i~~lk~~~~ 598 (782)
T PRK00409 561 QEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQK 598 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44555666777788999999999999998888887654
No 212
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=22.35 E-value=6.4e+02 Score=24.80 Aligned_cols=53 Identities=25% Similarity=0.376 Sum_probs=36.2
Q ss_pred HHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 53 LLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 53 ~LlRLKq~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
++.-|+..+..+-+|-+.-+--..+|++.+|+ ..|-|.+|+.||. .+|+-+.+
T Consensus 62 ~v~~~~~~i~~k~~El~~L~~~d~~kv~~~E~----L~d~v~eLkeel~---~el~~l~~ 114 (146)
T PF05852_consen 62 KVSSLETEISEKKKELSHLKKFDRKKVEDLEK----LTDRVEELKEELE---FELERLQS 114 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH----HHHHHHHHHHHHH---HHHHHHhc
Confidence 34445666666767776666677888888876 4777888998876 45555544
No 213
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=22.34 E-value=93 Score=35.38 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=12.2
Q ss_pred hhHHHHHHHhhhHHHHH
Q 007188 78 KVDELEAQLNEAEDVIT 94 (614)
Q Consensus 78 ki~ELEaQL~eaed~v~ 94 (614)
||++|++||++.+.-+.
T Consensus 32 kie~L~kql~~Lk~q~~ 48 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQD 48 (489)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999655554444
No 214
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=22.23 E-value=6.1e+02 Score=27.71 Aligned_cols=41 Identities=22% Similarity=0.394 Sum_probs=37.2
Q ss_pred hHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 72 SLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 72 sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
-...|++..+++.+..++..-|..+..||.+..++||++..
T Consensus 275 Yr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~ 315 (359)
T PF10498_consen 275 YRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQ 315 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999999999999999984
No 215
>PF15556 Zwint: ZW10 interactor
Probab=21.99 E-value=9.5e+02 Score=25.37 Aligned_cols=61 Identities=21% Similarity=0.260 Sum_probs=40.2
Q ss_pred HHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHHHHhhhhhchhhhHHHHhhHHhh
Q 007188 8 VALKKAYAD---IILNTAREAAARIMASERQALRFEKDLSNTKDEALRLLVRVKQMIDSTTKEAEITSLTKQ 76 (614)
Q Consensus 8 ~ALkkAyad---iilntaKEAAaRVm~aERkA~~~~qeL~~~KeeaL~~LlRLKq~~Daki~EaE~~sl~~q 76 (614)
..||--|.| +|-..--+|-+.|-.++||-..++. |+.-|-.=|||+.-|..-|-..=-.+|
T Consensus 69 KeLKAtYqehVEaIk~alt~aL~q~eEaqrK~~qLqe--------A~eqlqaKKqva~eK~r~AQkqwqlqQ 132 (252)
T PF15556_consen 69 KELKATYQEHVEAIKSALTQALPQVEEAQRKRTQLQE--------ALEQLQAKKQVAMEKLRAAQKQWQLQQ 132 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777864 6667778899999999999888764 444455555655555555554433333
No 216
>PTZ00121 MAEBL; Provisional
Probab=21.95 E-value=9.4e+02 Score=31.88 Aligned_cols=103 Identities=25% Similarity=0.261 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHHHHhhhhhchhhhHHHHhhHHhhhhhH
Q 007188 1 MAESEKMVALKKAYADIILNTAREAAARIMASERQALRFEKDLSNTKDEALRLLVRVKQMIDSTTKEAEITSLTKQRKVD 80 (614)
Q Consensus 1 Maese~l~ALkkAyadiilntaKEAAaRVm~aERkA~~~~qeL~~~KeeaL~~LlRLKq~~Daki~EaE~~sl~~qrki~ 80 (614)
|++..++++|++| .--.+..++|.+--.|++..-.+.....+.|.++.+=-.++-++..-..-|-+.+.+.|+.+
T Consensus 1184 aEE~Rr~EElRra-----EEaRkaEEaRRlEE~RraEEARraEEErR~EE~RraEEaRK~aEEAkraEEeR~~EE~Rk~E 1258 (2084)
T PTZ00121 1184 AEEVRKAEELRKA-----EDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFE 1258 (2084)
T ss_pred HHHHHHHHHHHHH-----HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 007188 81 ELEAQLNEAEDVITDLRSELRWVTDKLEKV 110 (614)
Q Consensus 81 ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (614)
||+|.++-.--+..+.|..|...+|.++
T Consensus 1259 --ear~a~~A~r~aa~k~Ee~RrAee~~k~ 1286 (2084)
T PTZ00121 1259 --EARMAHFARRQAAIKAEEARKADELKKA 1286 (2084)
T ss_pred --HHHHHHHHHHhHhhhhHHHHHHHHHHHH
No 217
>PRK12705 hypothetical protein; Provisional
Probab=21.73 E-value=1.1e+03 Score=27.21 Aligned_cols=89 Identities=17% Similarity=0.175 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHH
Q 007188 21 TAREAAARIMASERQALRFEKDLSNTKDEALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSEL 100 (614)
Q Consensus 21 taKEAAaRVm~aERkA~~~~qeL~~~KeeaL~~LlRLKq~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~EL 100 (614)
..|+|..-+--|+++|..+. ..+--+|=.-..++++-++..+.+.-...-...+++...|.+|..-.+-+.....+|
T Consensus 31 ~~~~a~~~~~~a~~~a~~~~---~~~~~~~~~~~~~~~~~~e~e~~~~~~~~~~~e~rl~~~e~~l~~~~~~l~~~~~~l 107 (508)
T PRK12705 31 LAKEAERILQEAQKEAEEKL---EAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLENQL 107 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhc
Q 007188 101 RWVTDKLEKVKN 112 (614)
Q Consensus 101 r~~~~eLEk~~~ 112 (614)
......|+....
T Consensus 108 ~~~~~~l~~~~~ 119 (508)
T PRK12705 108 EEREKALSAREL 119 (508)
T ss_pred HHHHHHHHHHHH
No 218
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=21.64 E-value=4.7e+02 Score=26.56 Aligned_cols=72 Identities=14% Similarity=0.216 Sum_probs=0.0
Q ss_pred HhhhhhhcHHHHHHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 39 FEKDLSNTKDEALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 39 ~~qeL~~~KeeaL~~LlRLKq~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
++..+..++.+-..+..+ .....+.+...+......++.|..+++++..++..+..++.+|..++.+++.++
T Consensus 53 ~~~~~~~a~a~l~~a~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~R~~ 124 (327)
T TIGR02971 53 RTAELDVARTQLDEAKAR-LAQVRAGAKKGEIAAQRAARAAAKLFKDVAAQQATLNRLEAELETAQREVDRYR 124 (327)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHhccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 219
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.59 E-value=1.1e+03 Score=27.38 Aligned_cols=106 Identities=22% Similarity=0.336 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHH-----------------HHHHHh---------hhhhhcHHHHHHHHHHh-------
Q 007188 11 KKAYADIILNTAREAAARIMASER-----------------QALRFE---------KDLSNTKDEALRLLVRV------- 57 (614)
Q Consensus 11 kkAyadiilntaKEAAaRVm~aER-----------------kA~~~~---------qeL~~~KeeaL~~LlRL------- 57 (614)
.||.|.|-.||..||-+-|.-.++ -+.+.+ |+-+--++.-|..|++|
T Consensus 57 ikaia~vsE~tk~EaV~av~rq~~eeVaSlqa~~k~~~~~ye~q~~~~leqertq~qq~~e~~erEv~~l~~llsr~~~~ 136 (542)
T KOG0993|consen 57 IKAIATVSEPTKSEAVSAVVRQEEEEVASLQASQKSPNPTYECQMCQNLEQERTQLQQNEEKLEREVKALMELLSRGQYQ 136 (542)
T ss_pred HHHHHHhcCcchHHHHHHHHHhhccccchhHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Q ss_pred ----hhhhchhhhHHHHhhHHh--hhhhHHHHHHHhhhHHHHHHHH-------HHHHHHHHHHHHHhcCCCC
Q 007188 58 ----KQMIDSTTKEAEITSLTK--QRKVDELEAQLNEAEDVITDLR-------SELRWVTDKLEKVKNNPLQ 116 (614)
Q Consensus 58 ----Kq~~Daki~EaE~~sl~~--qrki~ELEaQL~eaed~v~~Lr-------~ELr~~~~eLEk~~~~~~q 116 (614)
++|=-++--+.-+.++.- -+.|.||-++|-.||+.|.+|. .+|-..-+.|+.+|...-|
T Consensus 137 ~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE~~i~El~k~~~h~a~slh~~t~lL~L~RD~s~~ 208 (542)
T KOG0993|consen 137 LDLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAKAEQRIDELSKAKHHKAESLHVFTDLLNLARDKSEQ 208 (542)
T ss_pred hhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhhcccchHHHHHHHHHHHhcCCchh
No 220
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=21.59 E-value=5.9e+02 Score=31.37 Aligned_cols=90 Identities=17% Similarity=0.300 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHH------HHh--hHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHH-HHhhhhhchhhhHHHHhhHHh
Q 007188 5 EKMVALKKAYADI------ILN--TAREAAARIMASERQALRFEKDLSNTKDEALRLL-VRVKQMIDSTTKEAEITSLTK 75 (614)
Q Consensus 5 e~l~ALkkAyadi------iln--taKEAAaRVm~aERkA~~~~qeL~~~KeeaL~~L-lRLKq~~Daki~EaE~~sl~~ 75 (614)
+.+++|.+|+..| |-+ +.+||..++|.. | .-+..+|=+.| |||.++.--.+..-
T Consensus 389 ~i~eGl~~a~~~id~vi~~ir~s~~~~~a~~~l~~~------f----~~s~~qa~aIl~mrL~~Lt~le~~kl------- 451 (957)
T PRK13979 389 HIVEGFIKAIGIMDEIIKTIRSSKSKKDASENLIEK------F----GFTDEQAEAILELMLYRLTGLEIVAF------- 451 (957)
T ss_pred HHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHH------h----CCCHHHHHHHHhCcHHhhhhhHHHHH-------
Confidence 4567888887643 222 234555555431 1 22334443333 56666533222211
Q ss_pred hhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 76 QRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 76 qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
+...+||+++..+.++|+.+-..=++-..+||..++
T Consensus 452 ~~E~~eL~~~I~~l~~iL~~~~~l~~vi~~EL~eik 487 (957)
T PRK13979 452 EKEYKELEKLIKKLTKILSSEKELLKVIKKELKEVK 487 (957)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 233455555555555555555555555555555554
No 221
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=21.44 E-value=1.3e+03 Score=26.71 Aligned_cols=36 Identities=11% Similarity=0.040 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHhhHH---------------HHHHHHHHHHHHHHHHhh
Q 007188 6 KMVALKKAYADIILNTAR---------------EAAARIMASERQALRFEK 41 (614)
Q Consensus 6 ~l~ALkkAyadiilntaK---------------EAAaRVm~aERkA~~~~q 41 (614)
.+.++-.+|-+--++.-. +.-.++-.+|++...|.+
T Consensus 172 iaN~la~~Y~~~~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~ 222 (754)
T TIGR01005 172 IPDAIAAAYIAGQGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRA 222 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666655444433 334455566666666644
No 222
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=21.36 E-value=8.4e+02 Score=28.22 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=18.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHH
Q 007188 85 QLNEAEDVITDLRSELRWVTDKLEK 109 (614)
Q Consensus 85 QL~eaed~v~~Lr~ELr~~~~eLEk 109 (614)
++..+++++-|+-.||...+++||+
T Consensus 424 d~aK~~~~myd~~~~l~~~q~~le~ 448 (489)
T KOG3684|consen 424 DLAKTQNDMYDLLQELHSRQEELEK 448 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777888888888887775
No 223
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=21.32 E-value=5.6e+02 Score=23.88 Aligned_cols=51 Identities=12% Similarity=0.208 Sum_probs=33.6
Q ss_pred HHhhhhhhcHHHHHHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhh
Q 007188 38 RFEKDLSNTKDEALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNE 88 (614)
Q Consensus 38 ~~~qeL~~~KeeaL~~LlRLKq~~Daki~EaE~~sl~~qrki~ELEaQL~e 88 (614)
...++..-+|.+|++.+-.|-..++..+.----.....|++|+--..+|+.
T Consensus 11 ~~re~~e~~r~ea~~s~~~l~~~l~d~ln~~v~~~~~Nqk~ie~e~k~L~~ 61 (121)
T PF06320_consen 11 ELREEQERARKEAIASAQALTNALVDHLNSRVSEAYENQKKIEKEAKQLQR 61 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHH
Confidence 344556677888888888887777666655555566777777655555443
No 224
>PF14131 DUF4298: Domain of unknown function (DUF4298)
Probab=20.94 E-value=2.2e+02 Score=25.12 Aligned_cols=34 Identities=18% Similarity=0.299 Sum_probs=23.8
Q ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 78 KVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 78 ki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
||+|+|+-+.+...++..|..=|.+.+.-.++++
T Consensus 1 rI~eme~~y~~~~~~l~~le~~l~~~~~~~~~~~ 34 (90)
T PF14131_consen 1 RIQEMEKIYNEWCELLEELEEALEKWQEAQPDYR 34 (90)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888777777766666555555554
No 225
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=20.84 E-value=4.7e+02 Score=32.68 Aligned_cols=35 Identities=17% Similarity=0.369 Sum_probs=26.3
Q ss_pred hhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 007188 75 KQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEK 109 (614)
Q Consensus 75 ~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk 109 (614)
...+.+.|+++|+.-.--+.++..|++.++..|.+
T Consensus 481 l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~ 515 (1041)
T KOG0243|consen 481 LKEEKEKLKSKLQNKNKELESLKEELQQAKATLKE 515 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888888888888888888777544
No 226
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=20.80 E-value=3.3e+02 Score=25.89 Aligned_cols=21 Identities=19% Similarity=0.218 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q 007188 24 EAAARIMASERQALRFEKDLS 44 (614)
Q Consensus 24 EAAaRVm~aERkA~~~~qeL~ 44 (614)
.|-+|+-.+|-+...+++++.
T Consensus 11 ~a~~r~e~~e~~~K~le~~~~ 31 (143)
T PF12718_consen 11 NAQDRAEELEAKVKQLEQENE 31 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666555555543
No 227
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=20.67 E-value=7.6e+02 Score=24.95 Aligned_cols=12 Identities=42% Similarity=0.484 Sum_probs=5.1
Q ss_pred HHHHHHHhhhhh
Q 007188 50 ALRLLVRVKQMI 61 (614)
Q Consensus 50 aL~~LlRLKq~~ 61 (614)
|-.+|=|++.-+
T Consensus 158 A~~LL~~v~~~~ 169 (264)
T PF06008_consen 158 AEDLLSRVQKWF 169 (264)
T ss_pred HHHHHHHHHHHH
Confidence 334444444444
No 228
>PRK14139 heat shock protein GrpE; Provisional
Probab=20.48 E-value=1.8e+02 Score=29.16 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=14.1
Q ss_pred hhHHHHHHHhhhHHHHHHHHHHH
Q 007188 78 KVDELEAQLNEAEDVITDLRSEL 100 (614)
Q Consensus 78 ki~ELEaQL~eaed~v~~Lr~EL 100 (614)
+|++|++++.+.+|....++.|+
T Consensus 40 ~l~~le~e~~elkd~~lR~~Aef 62 (185)
T PRK14139 40 ELAEAEAKAAELQDSFLRAKAET 62 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777666555555555554
No 229
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=20.42 E-value=40 Score=31.18 Aligned_cols=38 Identities=26% Similarity=0.505 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 75 KQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 75 ~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
+...+++++++|..++.-+.+|+.++.+...+++.++.
T Consensus 9 ~~~~~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~ 46 (165)
T PF01025_consen 9 EDEEIEELEEELEELEKEIEELKERLLRLQAEFENYRK 46 (165)
T ss_dssp CHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 230
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=20.39 E-value=2.7e+02 Score=26.26 Aligned_cols=12 Identities=33% Similarity=0.584 Sum_probs=5.1
Q ss_pred hhhhhHHHHHHH
Q 007188 75 KQRKVDELEAQL 86 (614)
Q Consensus 75 ~qrki~ELEaQL 86 (614)
.+|+|+++...+
T Consensus 66 ~~r~i~~ml~~~ 77 (108)
T COG3937 66 IPRKIEEMLSDL 77 (108)
T ss_pred hhHHHHHHHhhc
Confidence 344444444333
No 231
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=20.38 E-value=3.9e+02 Score=27.70 Aligned_cols=43 Identities=14% Similarity=0.235 Sum_probs=24.7
Q ss_pred hhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 007188 76 QRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKNNPLQPVNG 120 (614)
Q Consensus 76 qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~~~~qp~n~ 120 (614)
+..+++.++++..|+.-+...+.+|..++..|+.++ ..-|.+|
T Consensus 121 ~~~~d~a~~~~~~a~a~l~~a~a~l~~a~~~l~~~~--I~AP~dG 163 (310)
T PRK10559 121 REEIDQANNVLQTVLHQLAKAQATRDLAKLDLERTV--IRAPADG 163 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCE--EECCCCe
Confidence 344566666666666666666666666666555433 2345555
No 232
>smart00338 BRLZ basic region leucin zipper.
Probab=20.34 E-value=1.9e+02 Score=23.33 Aligned_cols=32 Identities=41% Similarity=0.544 Sum_probs=22.2
Q ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 007188 77 RKVDELEAQLNEAEDVITDLRSELRWVTDKLE 108 (614)
Q Consensus 77 rki~ELEaQL~eaed~v~~Lr~ELr~~~~eLE 108 (614)
.+++.|+++-.+...-|..|+.|+..+..+|.
T Consensus 33 ~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 33 RKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566666666666668888888887777664
No 233
>PRK14143 heat shock protein GrpE; Provisional
Probab=20.33 E-value=1.8e+02 Score=30.18 Aligned_cols=36 Identities=14% Similarity=0.388 Sum_probs=24.5
Q ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 77 RKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 77 rki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
..+.+|+++|.+++.-+.+|+..+.|+..++|..|+
T Consensus 67 ~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RK 102 (238)
T PRK14143 67 ARLAQLEQELESLKQELEELNSQYMRIAADFDNFRK 102 (238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666677777777777777777775
Done!