Query 007188
Match_columns 614
No_of_seqs 26 out of 28
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 19:24:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007188.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007188hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mq9_A Bone marrow stromal ant 93.0 1.2 4E-05 45.3 13.2 62 34-102 404-468 (471)
2 1zxa_A CGMP-dependent protein 82.4 1 3.4E-05 37.4 3.5 35 74-108 22-56 (67)
3 2ocy_A RAB guanine nucleotide 81.4 7.1 0.00024 36.6 9.2 87 15-113 61-151 (154)
4 3nmd_A CGMP dependent protein 77.0 3.4 0.00012 34.7 5.0 50 49-102 16-65 (72)
5 3efg_A Protein SLYX homolog; x 75.9 3.9 0.00013 34.2 5.1 53 60-112 11-63 (78)
6 2fxo_A Myosin heavy chain, car 74.1 47 0.0016 29.4 14.0 61 40-100 60-120 (129)
7 3hnw_A Uncharacterized protein 73.8 20 0.0007 32.5 9.7 77 27-109 50-135 (138)
8 3oja_B Anopheles plasmodium-re 73.5 76 0.0026 32.8 15.1 37 76-112 543-579 (597)
9 3na7_A HP0958; flagellar bioge 72.0 11 0.00038 36.3 8.0 44 49-93 5-48 (256)
10 3cve_A Homer protein homolog 1 67.5 13 0.00045 31.1 6.4 49 59-107 3-51 (72)
11 2efr_A General control protein 66.8 67 0.0023 30.0 11.7 20 26-45 34-53 (155)
12 3vkg_A Dynein heavy chain, cyt 66.6 58 0.002 42.4 14.6 33 69-101 2020-2052(3245)
13 3oja_B Anopheles plasmodium-re 66.4 33 0.0011 35.5 10.6 36 73-108 526-561 (597)
14 3vkg_A Dynein heavy chain, cyt 65.8 38 0.0013 44.0 12.8 35 77-111 2014-2048(3245)
15 3na7_A HP0958; flagellar bioge 65.1 71 0.0024 30.7 12.0 49 60-108 101-149 (256)
16 3mq7_A Bone marrow stromal ant 64.5 30 0.001 31.6 8.6 28 85-112 72-99 (121)
17 1i84_S Smooth muscle myosin he 63.3 23 0.0008 41.0 9.6 25 79-103 929-953 (1184)
18 3aco_A Pacsin2, protein kinase 61.4 1.1E+02 0.0039 29.9 13.0 103 9-111 85-226 (350)
19 2b9c_A Striated-muscle alpha t 60.7 56 0.0019 30.0 9.9 75 1-98 48-122 (147)
20 1gd2_E Transcription factor PA 58.0 13 0.00043 30.8 4.6 34 77-110 29-62 (70)
21 3i00_A HIP-I, huntingtin-inter 57.5 41 0.0014 30.2 8.2 58 56-113 26-83 (120)
22 1ic2_A Tropomyosin alpha chain 56.9 75 0.0026 26.0 9.1 66 35-102 7-73 (81)
23 3cvf_A Homer-3, homer protein 56.6 28 0.00096 29.6 6.6 49 59-107 9-57 (79)
24 1zvu_A Topoisomerase IV subuni 56.4 35 0.0012 38.6 9.2 105 4-115 347-454 (716)
25 3nmd_A CGMP dependent protein 55.7 37 0.0013 28.5 7.1 50 67-117 23-72 (72)
26 2xcs_B DNA gyrase subunit B, D 55.2 66 0.0022 36.3 11.1 91 4-111 579-678 (692)
27 4dk0_A Putative MACA; alpha-ha 53.6 42 0.0014 32.5 8.3 37 76-112 114-150 (369)
28 1t2k_D Cyclic-AMP-dependent tr 51.7 31 0.0011 26.9 5.8 36 76-111 21-56 (61)
29 3onj_A T-snare VTI1; helix, HA 50.9 40 0.0014 28.6 6.7 56 38-103 5-60 (97)
30 2dgc_A Protein (GCN4); basic d 50.1 18 0.00062 29.0 4.2 34 74-107 27-60 (63)
31 2qyw_A Vesicle transport throu 50.1 41 0.0014 28.8 6.8 58 37-103 18-75 (102)
32 1gk4_A Vimentin; intermediate 48.8 50 0.0017 27.4 6.9 18 54-71 6-23 (84)
33 3tnu_B Keratin, type II cytosk 47.9 86 0.0029 27.5 8.6 25 85-109 76-100 (129)
34 2wt7_A Proto-oncogene protein 47.4 39 0.0013 26.7 5.8 37 75-111 21-57 (63)
35 2e7s_A RAB guanine nucleotide 47.4 5.3 0.00018 36.9 0.9 74 23-108 57-134 (135)
36 3efg_A Protein SLYX homolog; x 47.4 31 0.0011 28.8 5.4 35 77-111 14-48 (78)
37 1vcs_A Vesicle transport throu 46.9 26 0.0009 30.0 5.0 53 39-101 10-62 (102)
38 3haj_A Human pacsin2 F-BAR; pa 46.5 2.4E+02 0.0082 29.3 13.1 63 48-110 146-218 (486)
39 3m9b_A Proteasome-associated A 46.2 15 0.00052 36.8 3.9 37 76-112 60-96 (251)
40 3ilw_A DNA gyrase subunit A; D 46.0 92 0.0031 33.7 10.0 62 44-112 396-458 (470)
41 3tnu_A Keratin, type I cytoske 45.7 51 0.0018 29.1 6.9 24 85-108 78-101 (131)
42 1ci6_A Transcription factor AT 45.2 44 0.0015 26.6 5.8 30 79-108 25-61 (63)
43 3hnw_A Uncharacterized protein 44.9 34 0.0012 31.1 5.7 40 73-112 71-110 (138)
44 3abh_A Pacsin2, protein kinase 44.8 1.4E+02 0.0049 28.6 10.4 64 9-72 85-177 (312)
45 2i1j_A Moesin; FERM, coiled-co 44.7 8.7 0.0003 41.6 2.1 28 25-52 354-381 (575)
46 3azd_A Short alpha-tropomyosin 42.9 10 0.00034 27.9 1.6 25 76-100 10-34 (37)
47 1jnm_A Proto-oncogene C-JUN; B 42.5 38 0.0013 26.6 5.0 38 75-112 20-57 (62)
48 2dfs_A Myosin-5A; myosin-V, in 42.0 37 0.0013 39.6 6.7 29 83-111 976-1004(1080)
49 3m0d_C TNF receptor-associated 41.8 37 0.0013 27.1 4.9 32 79-110 8-39 (65)
50 2xdj_A Uncharacterized protein 41.6 78 0.0027 26.8 7.0 36 77-112 20-55 (83)
51 2inr_A DNA topoisomerase 4 sub 41.2 1.4E+02 0.0048 32.6 10.6 35 78-112 462-496 (514)
52 1fxk_C Protein (prefoldin); ar 40.7 41 0.0014 29.1 5.4 36 76-111 94-129 (133)
53 3i00_A HIP-I, huntingtin-inter 40.5 1.1E+02 0.0038 27.4 8.2 61 52-112 15-75 (120)
54 4b4t_J 26S protease regulatory 40.4 34 0.0012 35.9 5.6 49 56-111 18-66 (405)
55 1ci6_A Transcription factor AT 39.7 45 0.0015 26.5 5.0 26 77-102 37-62 (63)
56 2f1m_A Acriflavine resistance 39.6 1.2E+02 0.004 28.3 8.7 43 76-120 97-139 (277)
57 1wt6_A Myotonin-protein kinase 39.4 1.3E+02 0.0043 25.9 7.9 31 82-112 43-73 (81)
58 1dh3_A Transcription factor CR 39.3 74 0.0025 24.8 6.1 29 77-112 22-50 (55)
59 3fpp_A Macrolide-specific effl 38.6 97 0.0033 29.7 8.1 37 76-112 113-149 (341)
60 3mq9_A Bone marrow stromal ant 37.7 3.3E+02 0.011 27.4 13.7 30 82-111 441-470 (471)
61 1gd2_E Transcription factor PA 37.2 52 0.0018 27.2 5.1 33 78-110 37-69 (70)
62 2v71_A Nuclear distribution pr 36.8 1.7E+02 0.0058 28.2 9.3 33 80-112 45-77 (189)
63 1l8d_A DNA double-strand break 34.4 91 0.0031 26.1 6.4 44 78-121 11-55 (112)
64 2x3v_A Syndapin I, protein kin 33.7 3.3E+02 0.011 26.3 13.9 101 9-109 76-215 (337)
65 4etp_A Kinesin-like protein KA 33.4 86 0.0029 32.5 7.3 51 64-114 11-61 (403)
66 2no2_A HIP-I, huntingtin-inter 33.4 2.4E+02 0.0084 24.6 9.1 21 90-110 53-73 (107)
67 3u59_A Tropomyosin beta chain; 32.5 2.3E+02 0.0078 24.0 10.3 28 76-103 50-77 (101)
68 2jee_A YIIU; FTSZ, septum, coi 32.5 69 0.0023 27.4 5.3 24 80-103 9-32 (81)
69 3m91_A Proteasome-associated A 32.3 84 0.0029 24.7 5.3 36 76-111 15-50 (51)
70 1yke_B RNA polymerase II holoe 32.1 61 0.0021 29.9 5.3 43 73-115 88-134 (151)
71 2lw1_A ABC transporter ATP-bin 31.6 44 0.0015 27.8 3.9 33 78-110 37-75 (89)
72 3m9b_A Proteasome-associated A 31.3 42 0.0014 33.7 4.3 37 76-112 53-89 (251)
73 3m91_A Proteasome-associated A 30.4 96 0.0033 24.3 5.4 34 78-111 10-43 (51)
74 3trt_A Vimentin; cytoskeleton, 30.3 92 0.0032 24.8 5.5 26 86-111 51-76 (77)
75 2dfs_A Myosin-5A; myosin-V, in 30.3 1.3E+02 0.0044 35.2 8.7 11 92-102 992-1002(1080)
76 2v0o_A FCHO2, FCH domain only 29.9 3.4E+02 0.012 25.1 13.5 60 44-103 128-189 (276)
77 2xkj_E Topoisomerase IV; type 29.7 2E+02 0.0068 32.9 9.8 97 5-108 642-741 (767)
78 2xnx_M M protein, M1-BC1; cell 28.9 1.6E+02 0.0056 27.6 7.6 57 53-111 51-107 (146)
79 1x8y_A Lamin A/C; structural p 28.8 95 0.0032 25.9 5.5 12 59-70 13-24 (86)
80 1m1j_C Fibrinogen gamma chain; 28.6 2.3E+02 0.0079 29.9 9.6 33 85-117 106-138 (409)
81 1t2k_D Cyclic-AMP-dependent tr 28.1 90 0.0031 24.3 4.9 31 77-107 29-59 (61)
82 2b5u_A Colicin E3; high resolu 28.0 1.7E+02 0.0057 32.4 8.5 26 87-112 345-370 (551)
83 4ani_A Protein GRPE; chaperone 27.3 71 0.0024 31.1 5.1 35 78-112 60-94 (213)
84 1zme_C Proline utilization tra 27.2 38 0.0013 25.8 2.6 24 78-101 45-68 (70)
85 3kin_B Kinesin heavy chain; mo 27.1 87 0.003 27.5 5.2 33 80-112 85-117 (117)
86 3ni0_A Bone marrow stromal ant 27.1 3.3E+02 0.011 24.2 8.7 56 39-105 30-88 (99)
87 2zdi_C Prefoldin subunit alpha 27.0 84 0.0029 28.0 5.2 39 75-113 103-141 (151)
88 2efl_A Formin-binding protein 26.2 4E+02 0.014 24.8 13.0 36 76-111 129-164 (305)
89 3mov_A Lamin-B1; LMNB1, B-type 26.2 64 0.0022 27.7 4.1 24 85-108 38-61 (95)
90 2er8_A Regulatory protein Leu3 25.7 28 0.00095 26.9 1.6 23 76-98 48-70 (72)
91 3ghg_A Fibrinogen alpha chain; 25.6 3.4E+02 0.011 30.2 10.3 44 76-119 123-166 (562)
92 3gpv_A Transcriptional regulat 25.4 2.6E+02 0.0087 24.8 8.0 92 20-111 17-129 (148)
93 1c1g_A Tropomyosin; contractIl 25.0 3.4E+02 0.012 23.6 15.1 8 7-14 8-15 (284)
94 3m0a_A TNF receptor-associated 24.8 1.1E+02 0.0039 23.8 5.0 32 79-110 7-38 (66)
95 1lwu_C Fibrinogen gamma chain; 24.7 1E+02 0.0035 31.7 5.9 36 66-101 15-50 (323)
96 2v4h_A NF-kappa-B essential mo 24.6 1.1E+02 0.0037 27.6 5.3 31 79-109 26-56 (110)
97 3u1c_A Tropomyosin alpha-1 cha 24.3 3.3E+02 0.011 23.2 10.3 36 66-103 42-77 (101)
98 4dk0_A Putative MACA; alpha-ha 23.6 2.2E+02 0.0075 27.5 7.8 46 76-123 121-166 (369)
99 3he5_B Synzip2; heterodimeric 23.3 1.1E+02 0.0036 24.0 4.4 26 82-107 22-47 (52)
100 2nov_A DNA topoisomerase 4 sub 22.8 1.4E+02 0.0047 32.5 6.7 34 78-111 438-471 (496)
101 2wg5_A General control protein 22.6 74 0.0025 27.6 3.8 29 77-112 7-35 (109)
102 3tnu_B Keratin, type II cytosk 22.5 2.3E+02 0.008 24.7 7.1 55 34-96 43-101 (129)
103 2pms_C Pneumococcal surface pr 22.4 3.2E+02 0.011 25.0 8.0 26 26-51 12-37 (125)
104 1ykh_B RNA polymerase II holoe 22.1 1.4E+02 0.0048 26.8 5.7 36 73-111 88-123 (132)
105 1nkp_B MAX protein, MYC proto- 21.9 1E+02 0.0034 25.1 4.3 47 63-110 34-80 (83)
106 3oja_A Leucine-rich immune mol 21.6 1.9E+02 0.0065 29.4 7.2 83 26-108 304-398 (487)
107 3gp4_A Transcriptional regulat 21.6 3.9E+02 0.013 23.6 8.4 19 22-40 5-23 (142)
108 3htk_A Structural maintenance 21.3 1.7E+02 0.006 22.1 5.3 13 93-105 35-47 (60)
109 2ke4_A CDC42-interacting prote 21.3 3.1E+02 0.011 23.6 7.5 29 83-111 61-89 (98)
110 2lw1_A ABC transporter ATP-bin 21.2 1.2E+02 0.0039 25.2 4.6 23 75-97 20-42 (89)
111 2z5i_A TM, general control pro 20.7 1E+02 0.0035 24.0 3.9 39 65-103 7-45 (52)
112 2p32_A Heat shock 70 kDa prote 20.1 3.2E+02 0.011 23.2 7.3 45 41-87 14-63 (120)
No 1
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=93.01 E-value=1.2 Score=45.34 Aligned_cols=62 Identities=18% Similarity=0.329 Sum_probs=35.5
Q ss_pred HHHHHHhhhhhhcHHHH---HHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHH
Q 007188 34 RQALRFEKDLSNTKDEA---LRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRW 102 (614)
Q Consensus 34 RkA~~~~qeL~~~Keea---L~~LlRLKq~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~ 102 (614)
|+-.+++..+..++-+| =++.|-|-..+|.++.. +++||+|||+++.+.+.-+.+++.|++|
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 404 QELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQ-------GQKKVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444 35677777777666543 4469999999955555545555544444
No 2
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=82.36 E-value=1 Score=37.35 Aligned_cols=35 Identities=31% Similarity=0.505 Sum_probs=27.9
Q ss_pred HhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 007188 74 TKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLE 108 (614)
Q Consensus 74 ~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLE 108 (614)
.+.-+|.|||+.|.+..+.|+.||.+|.+.++.|.
T Consensus 22 ~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 22 LKEERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44568999999999999999999999999888776
No 3
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=81.40 E-value=7.1 Score=36.63 Aligned_cols=87 Identities=20% Similarity=0.287 Sum_probs=60.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhhhhhh----cHHHHHHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhH
Q 007188 15 ADIILNTAREAAARIMASERQALRFEKDLSN----TKDEALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAE 90 (614)
Q Consensus 15 adiilntaKEAAaRVm~aERkA~~~~qeL~~----~KeeaL~~LlRLKq~~Daki~EaE~~sl~~qrki~ELEaQL~eae 90 (614)
....--.+.|.+.|. .+|+.-..+++||.. .=+||=.|. .+|-+..-.-.+|.+.|++||.+++
T Consensus 61 ~~L~~~l~~E~~~R~-~aE~~~~~ie~ElEeLTasLFeEAN~MV-----------a~ar~~~~~~e~r~~~L~~ql~e~~ 128 (154)
T 2ocy_A 61 KRLREDIAKENELRT-KAEEEADKLNKEVEDLTASLFDEANNMV-----------ADARKEKYAIEILNKRLTEQLREKD 128 (154)
T ss_dssp HHHHHHHHHHHHHHH-HHHTHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455555554 556666777888743 345555443 4455555566789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Q 007188 91 DVITDLRSELRWVTDKLEKVKNN 113 (614)
Q Consensus 91 d~v~~Lr~ELr~~~~eLEk~~~~ 113 (614)
.++..|+.+|..++..++.|.+-
T Consensus 129 ~~l~~lq~ql~~LK~v~~~m~~e 151 (154)
T 2ocy_A 129 TLLDTLTLQLKNLKKVMHSLDNE 151 (154)
T ss_dssp HHHHHHHHHHHHHHHTTSCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999988877653
No 4
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=77.01 E-value=3.4 Score=34.71 Aligned_cols=50 Identities=24% Similarity=0.370 Sum_probs=29.7
Q ss_pred HHHHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHH
Q 007188 49 EALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRW 102 (614)
Q Consensus 49 eaL~~LlRLKq~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~ 102 (614)
|+.-++-.|+..+.-++ .|+ ..+...|++||.+|.+-++.|+.||.||..
T Consensus 16 ~~mgti~eLq~~L~~K~--eEL--r~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 16 EGRGSLRDLQYALQEKI--EEL--RQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp ---CHHHHHHHHHHHHH--HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHH--HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555554332 233 345556999999988888877777776643
No 5
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=75.89 E-value=3.9 Score=34.19 Aligned_cols=53 Identities=19% Similarity=0.206 Sum_probs=41.4
Q ss_pred hhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 60 MIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 60 ~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
.++.+|.+.|+...-|..-|++|-..+-.-+..|..|+..|+.+...|..+..
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 46778899999988888889999999888888888888888888888777664
No 6
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=74.11 E-value=47 Score=29.36 Aligned_cols=61 Identities=21% Similarity=0.281 Sum_probs=31.9
Q ss_pred hhhhhhcHHHHHHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHH
Q 007188 40 EKDLSNTKDEALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSEL 100 (614)
Q Consensus 40 ~qeL~~~KeeaL~~LlRLKq~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~EL 100 (614)
++++.+-.++-+..|..-|+-++.+|.+.+-..-..-....+|.+.-..+++-|.+|+..|
T Consensus 60 E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~l 120 (129)
T 2fxo_A 60 EQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDI 120 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666676667766666666654433333344444444444444444444333
No 7
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=73.78 E-value=20 Score=32.53 Aligned_cols=77 Identities=21% Similarity=0.276 Sum_probs=51.2
Q ss_pred HHHHHHHHHH----HHHhhhhhhcHHHHHHHHHHhhhhhchhhhHHHHhhH-----HhhhhhHHHHHHHhhhHHHHHHHH
Q 007188 27 ARIMASERQA----LRFEKDLSNTKDEALRLLVRVKQMIDSTTKEAEITSL-----TKQRKVDELEAQLNEAEDVITDLR 97 (614)
Q Consensus 27 aRVm~aERkA----~~~~qeL~~~KeeaL~~LlRLKq~~Daki~EaE~~sl-----~~qrki~ELEaQL~eaed~v~~Lr 97 (614)
.+++-.+|.| .-+..||.-++++.-.+.-.|... +.|+.+| ..|-++++++.++.+++.-+..|+
T Consensus 50 ~~~l~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~------~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~ 123 (138)
T 3hnw_A 50 YRRMSAELRTDMMYLNIADDYFKAKKMADSLSLDIENK------DKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQ 123 (138)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555543 456788888888865554444332 4444444 446778888888888888888888
Q ss_pred HHHHHHHHHHHH
Q 007188 98 SELRWVTDKLEK 109 (614)
Q Consensus 98 ~ELr~~~~eLEk 109 (614)
.++.++.++|+.
T Consensus 124 ~~~~~le~~~~~ 135 (138)
T 3hnw_A 124 KNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888888887764
No 8
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=73.52 E-value=76 Score=32.79 Aligned_cols=37 Identities=22% Similarity=0.312 Sum_probs=30.2
Q ss_pred hhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 76 QRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 76 qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
++++++||.++.+.++.+..|+.|+...+.+|.++..
T Consensus 543 ~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 543 EQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888888888888888888888888877764
No 9
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=71.99 E-value=11 Score=36.33 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=20.7
Q ss_pred HHHHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHH
Q 007188 49 EALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVI 93 (614)
Q Consensus 49 eaL~~LlRLKq~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v 93 (614)
+-|..|+.| |-+|.+|.+.+-.--.-...+++|++++.++++-+
T Consensus 5 ~~L~~L~~L-Q~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~ 48 (256)
T 3na7_A 5 THLKQLIEI-SHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAI 48 (256)
T ss_dssp HHHHHHHHH-HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 456667766 34455554433322222344555544444444333
No 10
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=67.46 E-value=13 Score=31.13 Aligned_cols=49 Identities=20% Similarity=0.298 Sum_probs=36.1
Q ss_pred hhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 007188 59 QMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKL 107 (614)
Q Consensus 59 q~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eL 107 (614)
|.+..|+.++|...-.=..++..||.+|..++.-=..++.||+++..-|
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~L 51 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEIL 51 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788888888777677788888888887777777777777765444
No 11
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=66.80 E-value=67 Score=30.04 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHhhhhhh
Q 007188 26 AARIMASERQALRFEKDLSN 45 (614)
Q Consensus 26 AaRVm~aERkA~~~~qeL~~ 45 (614)
--|+-++|.|...++.+|.+
T Consensus 34 EERae~aE~k~~eLEeeL~~ 53 (155)
T 2efr_A 34 EERAELSEGKSAELEEELKT 53 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666654
No 12
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=66.65 E-value=58 Score=42.42 Aligned_cols=33 Identities=24% Similarity=0.260 Sum_probs=13.5
Q ss_pred HHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHH
Q 007188 69 EITSLTKQRKVDELEAQLNEAEDVITDLRSELR 101 (614)
Q Consensus 69 E~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr 101 (614)
|......+.+.++++++|.+.|+.|+.|+.++.
T Consensus 2020 e~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~ 2052 (3245)
T 3vkg_A 2020 ENAANELKLKQDEIVATITALEKSIATYKEEYA 2052 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444444433
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=66.42 E-value=33 Score=35.46 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=15.2
Q ss_pred HHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 007188 73 LTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLE 108 (614)
Q Consensus 73 l~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLE 108 (614)
...++.++++.+++...+.-+..|+..++..++.++
T Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~ 561 (597)
T 3oja_B 526 QARRTEADAKQKETEDLEQENIALEKQLDNKRAKQA 561 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHH
Confidence 334444444444444444444444443333333333
No 14
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=65.84 E-value=38 Score=44.02 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=17.6
Q ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 77 RKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 77 rki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
.+++++|++|..|+.....++.+|+.+.++|++++
T Consensus 2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~ 2048 (3245)
T 3vkg_A 2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYK 2048 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555444443
No 15
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=65.09 E-value=71 Score=30.70 Aligned_cols=49 Identities=8% Similarity=0.088 Sum_probs=28.4
Q ss_pred hhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 007188 60 MIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLE 108 (614)
Q Consensus 60 ~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLE 108 (614)
....++...|-.-+..-.+|+++++.+.+++..+..++.+|.....+++
T Consensus 101 ~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~ 149 (256)
T 3na7_A 101 IAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVE 149 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555566666666666666666666666655555444
No 16
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=64.50 E-value=30 Score=31.61 Aligned_cols=28 Identities=25% Similarity=0.429 Sum_probs=21.1
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 85 QLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 85 QL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
++.+.|+-|.+|..+|+.+-.++|.+|.
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444588888889888888888885
No 17
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=63.28 E-value=23 Score=41.00 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=5.3
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHHHH
Q 007188 79 VDELEAQLNEAEDVITDLRSELRWV 103 (614)
Q Consensus 79 i~ELEaQL~eaed~v~~Lr~ELr~~ 103 (614)
+++|+++|.+.++.+.+|..++..+
T Consensus 929 l~ele~elee~ee~l~el~~e~~~l 953 (1184)
T 1i84_S 929 LHEMEARIEEEEERSQQLQAEKKKM 953 (1184)
T ss_dssp HHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 18
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=61.40 E-value=1.1e+02 Score=29.91 Aligned_cols=103 Identities=10% Similarity=0.170 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--------------------------hhhh---hhcHHHHHHHHHHhhh
Q 007188 9 ALKKAYADIILNTAREAAARIMASERQALRF--------------------------EKDL---SNTKDEALRLLVRVKQ 59 (614)
Q Consensus 9 ALkkAyadiilntaKEAAaRVm~aERkA~~~--------------------------~qeL---~~~KeeaL~~LlRLKq 59 (614)
.|..||..|+-.|...|..+...|+.=.... +.++ .......+..|-+.|.
T Consensus 85 tl~~aw~~l~~e~e~~a~~H~~la~~L~~~v~~~l~~~~~e~~~k~~~~~~ke~K~~~~~~~k~~k~~~~~~~~l~KaKk 164 (350)
T 3aco_A 85 TVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKK 164 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTSCBCTTSSBHHHHHHHHHHHHHTSHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777666666666666555554322111 1111 2223445566777888
Q ss_pred hhchhhhHHHHhhHHh----------hhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 60 MIDSTTKEAEITSLTK----------QRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 60 ~~Daki~EaE~~sl~~----------qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
.++..-.|+|...... ++.++-+++++..++..+...+.+.+..-..++.++
T Consensus 165 ~Y~~~c~e~e~a~~~~~~~~~d~~~~~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~ 226 (350)
T 3aco_A 165 AHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGT 226 (350)
T ss_dssp THHHHHHHHHHHHHHHTTSSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777777654321 355566667776666666666665555544444443
No 19
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=60.66 E-value=56 Score=29.98 Aligned_cols=75 Identities=21% Similarity=0.274 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHHHHhhhhhchhhhHHHHhhHHhhhhhH
Q 007188 1 MAESEKMVALKKAYADIILNTAREAAARIMASERQALRFEKDLSNTKDEALRLLVRVKQMIDSTTKEAEITSLTKQRKVD 80 (614)
Q Consensus 1 Maese~l~ALkkAyadiilntaKEAAaRVm~aERkA~~~~qeL~~~KeeaL~~LlRLKq~~Daki~EaE~~sl~~qrki~ 80 (614)
|.|.+++.-|....-+.. .+|++|--..--+.||...++.+|..+.+-|-.. ..+|.
T Consensus 48 ~~deEr~~~lE~qLkeak-~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~a----------------------E~k~~ 104 (147)
T 2b9c_A 48 QKDEEKMEIQEIQLKEAK-HIAEDADRKYEEVARKLVIIESDLERAEERAELS----------------------EGKCA 104 (147)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHH
T ss_pred cccHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHH
Q ss_pred HHHHHHhhhHHHHHHHHH
Q 007188 81 ELEAQLNEAEDVITDLRS 98 (614)
Q Consensus 81 ELEaQL~eaed~v~~Lr~ 98 (614)
+||.+|...-+.+.+|.+
T Consensus 105 eLEeeL~~~~~nlKsLE~ 122 (147)
T 2b9c_A 105 ELEEELKTVTNNLKSLED 122 (147)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHH
No 20
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=57.95 E-value=13 Score=30.80 Aligned_cols=34 Identities=15% Similarity=0.222 Sum_probs=18.8
Q ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 007188 77 RKVDELEAQLNEAEDVITDLRSELRWVTDKLEKV 110 (614)
Q Consensus 77 rki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (614)
..|.+||.++.+.+....+|..|-..++..++.+
T Consensus 29 ~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L 62 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSSTTLENDQLRQKVRQL 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666655555555544444444443
No 21
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=57.46 E-value=41 Score=30.17 Aligned_cols=58 Identities=19% Similarity=0.361 Sum_probs=39.3
Q ss_pred HhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 007188 56 RVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKNN 113 (614)
Q Consensus 56 RLKq~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~~ 113 (614)
+||+-++.-..|+-..-..=..+|-+||++|.+........++|...++.+|+.++..
T Consensus 26 ~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~ 83 (120)
T 3i00_A 26 GLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQ 83 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555556677777777777777777788888888888877653
No 22
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=56.86 E-value=75 Score=26.02 Aligned_cols=66 Identities=21% Similarity=0.268 Sum_probs=36.9
Q ss_pred HHHHHhhhhhhcHHHHHHHHHHhhhhhch-hhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHH
Q 007188 35 QALRFEKDLSNTKDEALRLLVRVKQMIDS-TTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRW 102 (614)
Q Consensus 35 kA~~~~qeL~~~KeeaL~~LlRLKq~~Da-ki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~ 102 (614)
|-..+..++.++.+.|-.+--.|+..-.. .-.|.|+.+| ++||.-||.+|..++.-+.+....|..
T Consensus 7 Km~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L--~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 7 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVAL--QKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555544444444433221 1245555554 688999999988777766655555543
No 23
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=56.57 E-value=28 Score=29.56 Aligned_cols=49 Identities=16% Similarity=0.220 Sum_probs=34.5
Q ss_pred hhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 007188 59 QMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKL 107 (614)
Q Consensus 59 q~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eL 107 (614)
.-+..|+.++|...-.=..+|..||.+|.+++.-=..++.||+++..-|
T Consensus 9 e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~L 57 (79)
T 3cvf_A 9 EETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLL 57 (79)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888887777777777777777777776677777777665443
No 24
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=56.43 E-value=35 Score=38.63 Aligned_cols=105 Identities=14% Similarity=0.211 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHH--HHHHhhHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHH-HHhhhhhchhhhHHHHhhHHhhhhhH
Q 007188 4 SEKMVALKKAYA--DIILNTAREAAARIMASERQALRFEKDLSNTKDEALRLL-VRVKQMIDSTTKEAEITSLTKQRKVD 80 (614)
Q Consensus 4 se~l~ALkkAya--diilntaKEAAaRVm~aERkA~~~~qeL~~~KeeaL~~L-lRLKq~~Daki~EaE~~sl~~qrki~ 80 (614)
-+.+++|.+||. |-+..+-+.+.. .|+ .|...+.-+..||=+.| |||.+..--.+.+.+..--.-+.+|+
T Consensus 347 ~hiLegl~ia~~~iDeVI~iIR~s~~------~k~-~L~~~f~lse~QA~aIL~mrL~rLt~le~~kl~~E~~eL~~~i~ 419 (716)
T 1zvu_A 347 LHILEGLLVAFLNIDEVIEIIRNEDE------PKP-ALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERD 419 (716)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHSSS------HHH-HHHHSTTCCTTHHHHHHTCCGGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHhhHHHHHHHHHhcCc------hHH-HHHHhcCCCHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 356788888885 333334333321 122 23233344455665555 67777654443333333222334455
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 007188 81 ELEAQLNEAEDVITDLRSELRWVTDKLEKVKNNPL 115 (614)
Q Consensus 81 ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~~~~ 115 (614)
+|++=|..-+.+..-++.||+....+.-.-|....
T Consensus 420 ~l~~iL~~~~~l~~~i~~EL~~i~~kygd~RRT~I 454 (716)
T 1zvu_A 420 QLQGILASERKMNNLLKKELQADAQAYGDDRRSPL 454 (716)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCSCB
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHhCCCccccc
Confidence 55555555555555555666655555544444443
No 25
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=55.65 E-value=37 Score=28.51 Aligned_cols=50 Identities=14% Similarity=0.278 Sum_probs=32.7
Q ss_pred HHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 007188 67 EAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKNNPLQP 117 (614)
Q Consensus 67 EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~~~~qp 117 (614)
|.+...-.....|...|+.+.+.|..+.....|++.++.+|.|.+. .++|
T Consensus 23 eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS-Vl~p 72 (72)
T 3nmd_A 23 DLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS-VIRP 72 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-TTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCC
Confidence 3333333334445666777777888888888888888888888876 4443
No 26
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=55.19 E-value=66 Score=36.34 Aligned_cols=91 Identities=21% Similarity=0.367 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHH--HHH------hhHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHH-HHhhhhhchhhhHHHHhhHH
Q 007188 4 SEKMVALKKAYAD--IIL------NTAREAAARIMASERQALRFEKDLSNTKDEALRLL-VRVKQMIDSTTKEAEITSLT 74 (614)
Q Consensus 4 se~l~ALkkAyad--iil------ntaKEAAaRVm~aERkA~~~~qeL~~~KeeaL~~L-lRLKq~~Daki~EaE~~sl~ 74 (614)
-+.+++|.+|+.. -|. ...+||-+++|. .| .-+..+|-+.| |||.++.--.+.+.
T Consensus 579 ~hilegl~~a~~~iD~vI~iIr~s~~~~~a~~~L~~------~f----~lse~Qa~aIL~m~L~rLt~le~~kl------ 642 (692)
T 2xcs_B 579 AHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQ------RF----KLSEKQAQAILDMRLRRLTGLERDKI------ 642 (692)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHTCSSHHHHHHHHHH------HH----TCCHHHHHHHHTCBGGGGSTTHHHHH------
T ss_pred HHHHhhHHHHHHhHHHHHHHHHhCCCHHHHHHHHhh------cc----CCCHHHHHHHHHhHHHHhhhHHHHHH------
Confidence 3566778777763 222 233444444442 12 23444444333 35655544433333
Q ss_pred hhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 75 KQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 75 ~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
+..++||++++.+.++++++-..=.+-..+||+.++
T Consensus 643 -~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~ 678 (692)
T 2xcs_B 643 -EAEYNELLNYISELETILADEEVLLQLVRDELTEIR 678 (692)
T ss_dssp -HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 334555666666666666654443444555555554
No 27
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=53.55 E-value=42 Score=32.50 Aligned_cols=37 Identities=11% Similarity=0.213 Sum_probs=25.2
Q ss_pred hhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 76 QRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 76 qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
+...++.++++..|+.-+..++.+|+.++.+|+.++.
T Consensus 114 ~~~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~ 150 (369)
T 4dk0_A 114 LDTLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAET 150 (369)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666777777777777777777777777664
No 28
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=51.72 E-value=31 Score=26.90 Aligned_cols=36 Identities=19% Similarity=0.329 Sum_probs=27.8
Q ss_pred hhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 76 QRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 76 qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
...+++||.+....+..-.+|+.|+..++.++..++
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445778888888888888888888888888777665
No 29
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=50.94 E-value=40 Score=28.62 Aligned_cols=56 Identities=18% Similarity=0.257 Sum_probs=40.6
Q ss_pred HHhhhhhhcHHHHHHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHH
Q 007188 38 RFEKDLSNTKDEALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWV 103 (614)
Q Consensus 38 ~~~qeL~~~KeeaL~~LlRLKq~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~ 103 (614)
.|+++...+-++.-+.|-+|...- .| .....|.+.|..|.||+++|..+..|++-+
T Consensus 5 ~YE~df~~~~~~i~~~l~~~~~~~----ge------~Rk~~i~~ie~~ldEA~ell~qMelE~~~~ 60 (97)
T 3onj_A 5 SYESDFKTTLEQAKASLAEAPSQP----LS------QRNTTLKHVEQQQDELFDLLDQMDVEVNNS 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGSC----HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC----hH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 477888888888877777764111 11 123457888999999999999999988877
No 30
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=50.14 E-value=18 Score=28.96 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=22.3
Q ss_pred HhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 007188 74 TKQRKVDELEAQLNEAEDVITDLRSELRWVTDKL 107 (614)
Q Consensus 74 ~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eL 107 (614)
..+..+++||.++...+..-..|+.|+..++.+|
T Consensus 27 RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 27 RKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788888886666666666666666655554
No 31
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=50.12 E-value=41 Score=28.82 Aligned_cols=58 Identities=14% Similarity=0.291 Sum_probs=41.2
Q ss_pred HHHhhhhhhcHHHHHHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHH
Q 007188 37 LRFEKDLSNTKDEALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWV 103 (614)
Q Consensus 37 ~~~~qeL~~~KeeaL~~LlRLKq~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~ 103 (614)
..|+++....-.+.-+.|-+|...... -.....|.+.|..|.||+++|..+..|++.+
T Consensus 18 e~YE~df~~l~~~i~~kl~~i~~~~~~---------e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~ 75 (102)
T 2qyw_A 18 EKLHEIFRGLLEDLQGVPERLLGTAGT---------EEKKKLVRDFDEKQQEANETLAEMEEELRYA 75 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCS---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCc---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 457888888888877777766433211 1123458899999999999999988887653
No 32
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=48.81 E-value=50 Score=27.37 Aligned_cols=18 Identities=17% Similarity=0.263 Sum_probs=10.6
Q ss_pred HHHhhhhhchhhhHHHHh
Q 007188 54 LVRVKQMIDSTTKEAEIT 71 (614)
Q Consensus 54 LlRLKq~~Daki~EaE~~ 71 (614)
|...+..++..|.|+|-.
T Consensus 6 l~~~~~sLE~~l~e~e~~ 23 (84)
T 1gk4_A 6 LKGTNESLERQMREMEEN 23 (84)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334556666666666654
No 33
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=47.95 E-value=86 Score=27.54 Aligned_cols=25 Identities=16% Similarity=0.407 Sum_probs=15.9
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHH
Q 007188 85 QLNEAEDVITDLRSELRWVTDKLEK 109 (614)
Q Consensus 85 QL~eaed~v~~Lr~ELr~~~~eLEk 109 (614)
+|..++.+|..|..||++++.+++.
T Consensus 76 ~l~~~q~~i~~lE~eL~~~r~e~~~ 100 (129)
T 3tnu_B 76 ALKDARNKLAELEEALQKAKQDMAR 100 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3445566677777777777666654
No 34
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=47.44 E-value=39 Score=26.68 Aligned_cols=37 Identities=24% Similarity=0.388 Sum_probs=26.4
Q ss_pred hhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 75 KQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 75 ~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
.+..|++||.+....+..-..|+.|+..+..++..+.
T Consensus 21 Kk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 21 RRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455777888877777777777777777777766654
No 35
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=47.40 E-value=5.3 Score=36.87 Aligned_cols=74 Identities=22% Similarity=0.314 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhh----cHHHHHHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHH
Q 007188 23 REAAARIMASERQALRFEKDLSN----TKDEALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRS 98 (614)
Q Consensus 23 KEAAaRVm~aERkA~~~~qeL~~----~KeeaL~~LlRLKq~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ 98 (614)
.|.+.| ..||..-..+++||.. .=+||=.|. .+|-+..-.-.+|.+.|++||.+++.++..|+.
T Consensus 57 eE~~~R-~~aE~~~~~ie~ElE~LTasLFeEAN~MV-----------a~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~ 124 (135)
T 2e7s_A 57 KENELR-TKAEEEADKLNKEVEDLTASLFDEANNLV-----------ADARMEKYAIEILNKRLTEQLREKDMLLDTLTL 124 (135)
T ss_dssp HTTSHH-HHHHHTTHHHHHHHHHHHHHHHHHHHHHH-----------HHTTHHHHHHHHHHHHHHHTTTHHHHCC-----
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444 3556666677777743 335554442 334444445578899999999999999999999
Q ss_pred HHHHHHHHHH
Q 007188 99 ELRWVTDKLE 108 (614)
Q Consensus 99 ELr~~~~eLE 108 (614)
.|+.++..++
T Consensus 125 QL~~LK~v~~ 134 (135)
T 2e7s_A 125 QLKNLKKVMH 134 (135)
T ss_dssp ----------
T ss_pred HHHHHHHHhc
Confidence 9998877664
No 36
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=47.37 E-value=31 Score=28.76 Aligned_cols=35 Identities=23% Similarity=0.208 Sum_probs=27.0
Q ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 77 RKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 77 rki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
.||.+||.+|--.+++|.+|-..+-+-+.++++++
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~ 48 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNA 48 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999998888888887777666666666665
No 37
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=46.86 E-value=26 Score=29.98 Aligned_cols=53 Identities=26% Similarity=0.436 Sum_probs=33.8
Q ss_pred HhhhhhhcHHHHHHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHH
Q 007188 39 FEKDLSNTKDEALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELR 101 (614)
Q Consensus 39 ~~qeL~~~KeeaL~~LlRLKq~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr 101 (614)
|+++....-.+.-+.|-+|... + . -.....|.+.|..|.||+++|..+..|++
T Consensus 10 YE~df~~l~~~i~~kl~~i~~~-~---g------eerk~~i~~ie~~l~EA~ell~qMelE~r 62 (102)
T 1vcs_A 10 YEQDFAVLTAEITSKIARVPRL-P---P------DEKKQMVANVEKQLEEARELLEQMDLEVR 62 (102)
T ss_dssp SHHHHHHHHHHHHHHHHHGGGS-C---T------TTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhcc-C---c------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777766665432 1 0 11234577888888888888877666644
No 38
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=46.52 E-value=2.4e+02 Score=29.35 Aligned_cols=63 Identities=10% Similarity=0.207 Sum_probs=35.5
Q ss_pred HHHHHHHHHhhhhhchhhhHHHHhhHHh----------hhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 007188 48 DEALRLLVRVKQMIDSTTKEAEITSLTK----------QRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKV 110 (614)
Q Consensus 48 eeaL~~LlRLKq~~Daki~EaE~~sl~~----------qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (614)
++.+..|-+.|..++..-.|+|...... ++.++-+++++..++..+...+.+.+..-..+++.
T Consensus 146 ~~~~~~l~KaKk~Y~~~cke~e~a~~~~~~a~~d~~~t~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~ 218 (486)
T 3haj_A 146 AKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQG 218 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566667777777777666553221 24455566666666665555555555554444433
No 39
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=46.18 E-value=15 Score=36.81 Aligned_cols=37 Identities=14% Similarity=0.376 Sum_probs=30.2
Q ss_pred hhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 76 QRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 76 qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
++.++.|++|.+-..+.+..||.||.+++.||++++.
T Consensus 60 ~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 60 EARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5566777777777778888999999999999999875
No 40
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=45.97 E-value=92 Score=33.68 Aligned_cols=62 Identities=15% Similarity=0.306 Sum_probs=36.7
Q ss_pred hhcHHHHHHHH-HHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 44 SNTKDEALRLL-VRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 44 ~~~KeeaL~~L-lRLKq~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
.-+..+|=+.| |||.++..-.+.+. +..++||++++.+.++++++-..-.+-..+||+.+++
T Consensus 396 ~lse~Qa~aIl~mrL~rLt~le~~kl-------~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~ 458 (470)
T 3ilw_A 396 DIDEIQAQAILDMQLRRLAALERQRI-------IDDLAKIEAEIADLEDILAKPERQRGIVRDELAEIVD 458 (470)
T ss_dssp TCCHHHHHHHHTCBGGGGSHHHHHHH-------HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhHHHHhhhHHHHHH-------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 34566776666 66766654333222 3345666777777777766666656666666666654
No 41
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=45.71 E-value=51 Score=29.09 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=12.9
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHH
Q 007188 85 QLNEAEDVITDLRSELRWVTDKLE 108 (614)
Q Consensus 85 QL~eaed~v~~Lr~ELr~~~~eLE 108 (614)
+|..++.+|..|..||++++.+++
T Consensus 78 ~l~~~q~~i~~lE~eL~~~r~em~ 101 (131)
T 3tnu_A 78 QLAQIQEMIGSVEEQLAQLRCEME 101 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555544
No 42
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=45.23 E-value=44 Score=26.55 Aligned_cols=30 Identities=23% Similarity=0.418 Sum_probs=14.4
Q ss_pred hHHHHHHHhhhHHH-------HHHHHHHHHHHHHHHH
Q 007188 79 VDELEAQLNEAEDV-------ITDLRSELRWVTDKLE 108 (614)
Q Consensus 79 i~ELEaQL~eaed~-------v~~Lr~ELr~~~~eLE 108 (614)
+++|+.++++.+.. |..|+.|+.++...|.
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444444 5555555555554443
No 43
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=44.94 E-value=34 Score=31.05 Aligned_cols=40 Identities=23% Similarity=0.295 Sum_probs=30.2
Q ss_pred HHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 73 LTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 73 l~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
+.-++++++|++++.+.+.-+-+|+.||..++-++|.+.+
T Consensus 71 ~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~ 110 (138)
T 3hnw_A 71 FKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAK 110 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678888888888888888888888877777776653
No 44
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=44.81 E-value=1.4e+02 Score=28.56 Aligned_cols=64 Identities=11% Similarity=0.128 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhh-----------------------------hhcHHHHHHHHHHhhh
Q 007188 9 ALKKAYADIILNTAREAAARIMASERQALRFEKDL-----------------------------SNTKDEALRLLVRVKQ 59 (614)
Q Consensus 9 ALkkAyadiilntaKEAAaRVm~aERkA~~~~qeL-----------------------------~~~KeeaL~~LlRLKq 59 (614)
.|..||..|+-.|...|..+...|+.=.......| .......+..|-+.|.
T Consensus 85 tl~~aw~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~k~~~~~~ke~k~~~~~~~k~~k~~~~~~~~l~KaK~ 164 (312)
T 3abh_A 85 TVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKK 164 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCTTSSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777676666666555554322221111 1223344555677777
Q ss_pred hhchhhhHHHHhh
Q 007188 60 MIDSTTKEAEITS 72 (614)
Q Consensus 60 ~~Daki~EaE~~s 72 (614)
-++..-.|+|...
T Consensus 165 ~Y~~~c~e~e~a~ 177 (312)
T 3abh_A 165 AHHAACKEEKLAI 177 (312)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766543
No 45
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=44.74 E-value=8.7 Score=41.56 Aligned_cols=28 Identities=18% Similarity=0.334 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcHHHHHH
Q 007188 25 AAARIMASERQALRFEKDLSNTKDEALR 52 (614)
Q Consensus 25 AAaRVm~aERkA~~~~qeL~~~KeeaL~ 52 (614)
|-.-+.-+|++|..|+.++.-+.+||..
T Consensus 354 ~~~~l~~~~~~~~~l~e~~~~~~~e~~~ 381 (575)
T 2i1j_A 354 SQANLLEAQDMILRLEEQLRQLQAAKEE 381 (575)
T ss_dssp HHHHHHHHHHC-----------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3344566788888888888887777653
No 46
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=42.88 E-value=10 Score=27.91 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.5
Q ss_pred hhhhHHHHHHHhhhHHHHHHHHHHH
Q 007188 76 QRKVDELEAQLNEAEDVITDLRSEL 100 (614)
Q Consensus 76 qrki~ELEaQL~eaed~v~~Lr~EL 100 (614)
++||+.|+.|+..||+-+..|..+|
T Consensus 10 KkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 10 RRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999999888766
No 47
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=42.54 E-value=38 Score=26.56 Aligned_cols=38 Identities=16% Similarity=0.330 Sum_probs=30.1
Q ss_pred hhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 75 KQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 75 ~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
....|++||.++.+.+..-..|+.|+..+..++..++.
T Consensus 20 Kk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 20 KLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44568888888888888888888888888888877654
No 48
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=41.95 E-value=37 Score=39.58 Aligned_cols=29 Identities=17% Similarity=0.338 Sum_probs=15.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 83 EAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 83 EaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
++++++++..|..|..|+...+.+++++.
T Consensus 976 ~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ 1004 (1080)
T 2dfs_A 976 EEEAKNATNRVLSLQEEIAKLRKELHQTQ 1004 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555544
No 49
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=41.81 E-value=37 Score=27.14 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=26.4
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 007188 79 VDELEAQLNEAEDVITDLRSELRWVTDKLEKV 110 (614)
Q Consensus 79 i~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (614)
|-+||+.+...|.||..+..|+.|...+||..
T Consensus 8 ~~~le~kl~~lEnIv~~l~~eve~~~~~lea~ 39 (65)
T 3m0d_C 8 LAELEGKLRVFENIVAVLNKEVEASHLALATS 39 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55678888888999988888888888888865
No 50
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=41.58 E-value=78 Score=26.79 Aligned_cols=36 Identities=22% Similarity=0.358 Sum_probs=24.6
Q ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 77 RKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 77 rki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
+-.-+|.-||...+.=|+.||-.+.+...+|+++..
T Consensus 20 q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 20 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 334556666666666677777777777777777764
No 51
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=41.18 E-value=1.4e+02 Score=32.60 Aligned_cols=35 Identities=20% Similarity=0.409 Sum_probs=18.6
Q ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 78 KVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 78 ki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
.++||++++.+.++++++-..=..-..+||+.+++
T Consensus 462 E~~~l~~ei~~l~~iL~~~~~~~~~i~~el~~i~~ 496 (514)
T 2inr_A 462 EHKELEALIKQLRHILDNHDALLNVIKEELNEIKK 496 (514)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 34555666666666655543334445555555553
No 52
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=40.74 E-value=41 Score=29.11 Aligned_cols=36 Identities=14% Similarity=0.263 Sum_probs=32.4
Q ss_pred hhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 76 QRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 76 qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
.+|++.|+.++...+..+..++..+..+...|+++.
T Consensus 94 ~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 94 KSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999999999999998875
No 53
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=40.48 E-value=1.1e+02 Score=27.41 Aligned_cols=61 Identities=20% Similarity=0.220 Sum_probs=44.8
Q ss_pred HHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 52 RLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 52 ~~LlRLKq~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
.++-+|+.-++.-..|-|..-...|+-|..|+.|+.+.|.-+..=|.+.+.+..+.+.++.
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~ 75 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRA 75 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678888888888888888888888888888666666666666666666667777763
No 54
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.45 E-value=34 Score=35.88 Aligned_cols=49 Identities=29% Similarity=0.484 Sum_probs=29.6
Q ss_pred HhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 56 RVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 56 RLKq~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
.|++.+..+|.|.|..-...+..+..||+|... |..+.++.++|++.++
T Consensus 18 ~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~-------l~~~~~~~~~e~~~l~ 66 (405)
T 4b4t_J 18 GIKPYFEQKIQETELKIRSKTENVRRLEAQRNA-------LNDKVRFIKDELRLLQ 66 (405)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhc
Confidence 357778888888888776777777888888554 4455555555665544
No 55
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=39.70 E-value=45 Score=26.52 Aligned_cols=26 Identities=15% Similarity=0.210 Sum_probs=17.5
Q ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHH
Q 007188 77 RKVDELEAQLNEAEDVITDLRSELRW 102 (614)
Q Consensus 77 rki~ELEaQL~eaed~v~~Lr~ELr~ 102 (614)
.+..+|++++...+.=+.-|+.-|.+
T Consensus 37 ~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 37 KKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34567777777777777777766654
No 56
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=39.57 E-value=1.2e+02 Score=28.29 Aligned_cols=43 Identities=19% Similarity=0.285 Sum_probs=30.6
Q ss_pred hhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 007188 76 QRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKNNPLQPVNG 120 (614)
Q Consensus 76 qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~~~~qp~n~ 120 (614)
+..+++.++++..|+.-+..++.+|+.++..|+.+.- .-|.+|
T Consensus 97 ~~~~~~a~~~~~~a~a~l~~a~a~l~~a~~~l~~~~I--~AP~~G 139 (277)
T 2f1m_A 97 KQEYDQALADAQQANAAVTAAKAAVETARINLAYTKV--TSPISG 139 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEE--CCSSCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEE--ECCCCe
Confidence 3456677777777877788888888888888876542 345555
No 57
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=39.40 E-value=1.3e+02 Score=25.93 Aligned_cols=31 Identities=29% Similarity=0.467 Sum_probs=23.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 82 LEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 82 LEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
++.+|.+|+-.-.+|..|++.++.+|+.++.
T Consensus 43 ~eskL~eae~rn~eL~~e~~~l~~~~eelq~ 73 (81)
T 1wt6_A 43 FASQLREAEARNRDLEAHVRQLQERMELLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4456666666688888888888888888764
No 58
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=39.28 E-value=74 Score=24.78 Aligned_cols=29 Identities=21% Similarity=0.373 Sum_probs=20.3
Q ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 77 RKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 77 rki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
.-+++||.+ |..|..|-..+..+++.++.
T Consensus 22 ~~~~~LE~~-------v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 22 EYVKSLENR-------VAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 347888888 66677777777777776664
No 59
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=38.59 E-value=97 Score=29.71 Aligned_cols=37 Identities=14% Similarity=0.304 Sum_probs=26.4
Q ss_pred hhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 76 QRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 76 qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
+...++.++++..++.-+..++.+|..++..|+.++.
T Consensus 113 ~~~~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~ 149 (341)
T 3fpp_A 113 QQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKT 149 (341)
T ss_dssp THHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777777777777778777777776664
No 60
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=37.70 E-value=3.3e+02 Score=27.44 Aligned_cols=30 Identities=23% Similarity=0.363 Sum_probs=22.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 82 LEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 82 LEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
-++.++|.|.-|+.|-.+|+....+.|..|
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 441 GQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 446777777778888888888777777654
No 61
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=37.17 E-value=52 Score=27.16 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=20.4
Q ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 007188 78 KVDELEAQLNEAEDVITDLRSELRWVTDKLEKV 110 (614)
Q Consensus 78 ki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (614)
++.+||.....+..-...||.++..+..||+..
T Consensus 37 ~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 37 QVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345555555555555667777777777777654
No 62
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=36.80 E-value=1.7e+02 Score=28.22 Aligned_cols=33 Identities=36% Similarity=0.441 Sum_probs=25.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 80 DELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 80 ~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
.|||++|..++...++|+..+.++..+++..+.
T Consensus 45 ~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~ 77 (189)
T 2v71_A 45 AELEAQLVQAEQRNRDLQADNQRLKYEVEALKE 77 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888888888888888888777764
No 63
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=34.37 E-value=91 Score=26.06 Aligned_cols=44 Identities=25% Similarity=0.385 Sum_probs=32.3
Q ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCC
Q 007188 78 KVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN-NPLQPVNGQ 121 (614)
Q Consensus 78 ki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~-~~~qp~n~q 121 (614)
+++++..+|.+..+.++.|+.++......|..+.. +..+|+=|+
T Consensus 11 ~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~g~~CPvCgs 55 (112)
T 1l8d_A 11 KKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGR 55 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Confidence 56777777777777788888888888888877766 555665553
No 64
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=33.73 E-value=3.3e+02 Score=26.26 Aligned_cols=101 Identities=11% Similarity=0.194 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH-------HHhhh----------------------hhhcHHHHHHHHHHhhh
Q 007188 9 ALKKAYADIILNTAREAAARIMASERQAL-------RFEKD----------------------LSNTKDEALRLLVRVKQ 59 (614)
Q Consensus 9 ALkkAyadiilntaKEAAaRVm~aERkA~-------~~~qe----------------------L~~~KeeaL~~LlRLKq 59 (614)
.|..||..|+-.|...|..+...|+.=.. .|..| +.....+.+..|-+.|.
T Consensus 76 tl~~aw~~~~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~e~~~k~~~~~~ke~K~~~~~~~k~~k~~~~~~~~l~KaKk 155 (337)
T 2x3v_A 76 SLERAWGAMMTEADKVSELHQEVKNSLLNEDLEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKK 155 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCSSCSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36667777776666666665554443321 11111 22333445677788888
Q ss_pred hhchhhhHHHHhhHH----------hhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 007188 60 MIDSTTKEAEITSLT----------KQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEK 109 (614)
Q Consensus 60 ~~Daki~EaE~~sl~----------~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk 109 (614)
.++..-.|+|.+... -.+.++-+++++..++..+...+.+.+..-..++.
T Consensus 156 ~Y~~~c~e~e~a~~~~~~~~~~~~~s~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~ 215 (337)
T 2x3v_A 156 AYHLACKEERLAMTREMNSKTEQSVTPEQQKKLVDKVDKCRQDVQKTQEKYEKVLEDVGK 215 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHhccccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887754221 12345555666666655555555554443333333
No 65
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=33.39 E-value=86 Score=32.51 Aligned_cols=51 Identities=12% Similarity=0.218 Sum_probs=30.5
Q ss_pred hhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 007188 64 TTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKNNP 114 (614)
Q Consensus 64 ki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~~~ 114 (614)
+|.+.+.....-+++|+++++.+.+.+..+.....+-|++..+|..++.+.
T Consensus 11 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnI 61 (403)
T 4etp_A 11 KIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNI 61 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 344444444444555666666666666666666666666777777777543
No 66
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=33.38 E-value=2.4e+02 Score=24.59 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007188 90 EDVITDLRSELRWVTDKLEKV 110 (614)
Q Consensus 90 ed~v~~Lr~ELr~~~~eLEk~ 110 (614)
.+.|..|+-||....++|..+
T Consensus 53 ~~~le~lk~eL~~~~~el~~l 73 (107)
T 2no2_A 53 LEVLESLKQELATSQRELQVL 73 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555544444443
No 67
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=32.54 E-value=2.3e+02 Score=23.98 Aligned_cols=28 Identities=14% Similarity=0.321 Sum_probs=13.9
Q ss_pred hhhhHHHHHHHhhhHHHHHHHHHHHHHH
Q 007188 76 QRKVDELEAQLNEAEDVITDLRSELRWV 103 (614)
Q Consensus 76 qrki~ELEaQL~eaed~v~~Lr~ELr~~ 103 (614)
++||.-||.+|..+++-+.+++..|...
T Consensus 50 ~kKiq~lE~eld~~~e~l~~a~~kLe~~ 77 (101)
T 3u59_A 50 QKKLKGTEDEVEKYSESVKEAQEKLEQA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555444444443
No 68
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=32.53 E-value=69 Score=27.41 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=12.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHH
Q 007188 80 DELEAQLNEAEDVITDLRSELRWV 103 (614)
Q Consensus 80 ~ELEaQL~eaed~v~~Lr~ELr~~ 103 (614)
+.||++++.|=|+|+-||.|+.+.
T Consensus 9 eqLE~KIq~avdtI~lLqmEieEL 32 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEEL 32 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555554433
No 69
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=32.30 E-value=84 Score=24.69 Aligned_cols=36 Identities=14% Similarity=0.380 Sum_probs=23.5
Q ss_pred hhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 76 QRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 76 qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
++.+.-|-++-+...+...+-|.||..++.+|+++.
T Consensus 15 ~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 15 EARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555555555557777777777777777777663
No 70
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=32.11 E-value=61 Score=29.92 Aligned_cols=43 Identities=30% Similarity=0.353 Sum_probs=27.5
Q ss_pred HHhhhhhHHHHHHHhhhHH----HHHHHHHHHHHHHHHHHHHhcCCC
Q 007188 73 LTKQRKVDELEAQLNEAED----VITDLRSELRWVTDKLEKVKNNPL 115 (614)
Q Consensus 73 l~~qrki~ELEaQL~eaed----~v~~Lr~ELr~~~~eLEk~~~~~~ 115 (614)
-.|.++|.+||+++.+++. .|..-...|.+++.-|..+..+++
T Consensus 88 eeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~~ia~~~l 134 (151)
T 1yke_B 88 EEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIEDFVDGIA 134 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999987753 444444555555555555555553
No 71
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=31.62 E-value=44 Score=27.77 Aligned_cols=33 Identities=18% Similarity=0.386 Sum_probs=17.8
Q ss_pred hhHHHHHHHhhh------HHHHHHHHHHHHHHHHHHHHH
Q 007188 78 KVDELEAQLNEA------EDVITDLRSELRWVTDKLEKV 110 (614)
Q Consensus 78 ki~ELEaQL~ea------ed~v~~Lr~ELr~~~~eLEk~ 110 (614)
+|.+|+++|... -+.+..|..+|..+..+|+.+
T Consensus 37 ~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~ 75 (89)
T 2lw1_A 37 KLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQA 75 (89)
T ss_dssp HHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666432 134556666666666655543
No 72
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=31.28 E-value=42 Score=33.74 Aligned_cols=37 Identities=19% Similarity=0.325 Sum_probs=32.6
Q ss_pred hhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 76 QRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 76 qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
-.++.+|+.|+..++.-...|..+|+.++.||++++.
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~Lke 89 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALRE 89 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478899999999999999999999999999999985
No 73
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=30.42 E-value=96 Score=24.34 Aligned_cols=34 Identities=18% Similarity=0.301 Sum_probs=21.8
Q ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 78 KVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 78 ki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
+..+|.+|+..+..--..|-..|++++++|++++
T Consensus 10 r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lk 43 (51)
T 3m91_A 10 DIHQLEARIDSLAARNSKLMETLKEARQQLLALR 43 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666667777777776665
No 74
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=30.30 E-value=92 Score=24.82 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=17.7
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 86 LNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 86 L~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
|+.+..-|.+||.-++++..+|+-++
T Consensus 51 l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 51 LRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45556667777777777777777664
No 75
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=30.25 E-value=1.3e+02 Score=35.16 Aligned_cols=11 Identities=45% Similarity=0.531 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 007188 92 VITDLRSELRW 102 (614)
Q Consensus 92 ~v~~Lr~ELr~ 102 (614)
-+..|+.++..
T Consensus 992 e~~~l~~~~~~ 1002 (1080)
T 2dfs_A 992 EIAKLRKELHQ 1002 (1080)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 76
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=29.85 E-value=3.4e+02 Score=25.10 Aligned_cols=60 Identities=15% Similarity=0.143 Sum_probs=36.6
Q ss_pred hhcHHHHHHHHHHhhhhhchhhhHHHHhhH--HhhhhhHHHHHHHhhhHHHHHHHHHHHHHH
Q 007188 44 SNTKDEALRLLVRVKQMIDSTTKEAEITSL--TKQRKVDELEAQLNEAEDVITDLRSELRWV 103 (614)
Q Consensus 44 ~~~KeeaL~~LlRLKq~~Daki~EaE~~sl--~~qrki~ELEaQL~eaed~v~~Lr~ELr~~ 103 (614)
..-..+++..|-+.|..++..-.|+|.... .-.+.++.+++++..|++-....-..+...
T Consensus 128 ~~~~~~~~~~l~Kak~~Y~~~c~e~e~~~~~~~s~k~~eK~~~k~~ka~~~Y~~~v~~~n~~ 189 (276)
T 2v0o_A 128 VQTIQSITQALQKSKENYNAKCVEQERLKKEGATQREIEKAAVKSKKATDTYKLYVEKYALA 189 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456677888899999988888886421 123556667777776665443333333333
No 77
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*
Probab=29.66 E-value=2e+02 Score=32.92 Aligned_cols=97 Identities=18% Similarity=0.221 Sum_probs=47.0
Q ss_pred HHHHHHHHHHH--HHHHhhHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHH-HHhhhhhchhhhHHHHhhHHhhhhhHH
Q 007188 5 EKMVALKKAYA--DIILNTAREAAARIMASERQALRFEKDLSNTKDEALRLL-VRVKQMIDSTTKEAEITSLTKQRKVDE 81 (614)
Q Consensus 5 e~l~ALkkAya--diilntaKEAAaRVm~aERkA~~~~qeL~~~KeeaL~~L-lRLKq~~Daki~EaE~~sl~~qrki~E 81 (614)
+.+++|..||. |-+..+-+.+.. .|+. +...+.-+..+|-+.| |||.++.--.+.+.+..--.-+.+|++
T Consensus 642 hiLegl~ia~~~iD~vI~iIr~s~~------~k~~-L~~~f~lse~qa~aIl~mrL~rLt~le~~kl~~E~~~l~~~i~~ 714 (767)
T 2xkj_E 642 HILAGLLIAYLDIDTVIRIIREEDQ------PKPV-LMEHFNIDEIQAEAILELKLRHLAKLEEMEIRHEQDELSAKAAI 714 (767)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHCSS------HHHH-HHHHHTCCHHHHHHHHHSCHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHHHHhccc------hHHH-HHHhcCCCHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 46677888873 333333333221 1222 2233344556776666 477777655444433332233344445
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 007188 82 LEAQLNEAEDVITDLRSELRWVTDKLE 108 (614)
Q Consensus 82 LEaQL~eaed~v~~Lr~ELr~~~~eLE 108 (614)
|+.-|..-+-+..-++.||.....+.-
T Consensus 715 l~~iL~~~~~~~~~i~~el~~~~~~yg 741 (767)
T 2xkj_E 715 IREQLENPESLKNLIISELKEDAKKFG 741 (767)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHhC
Confidence 544444444444445555555555443
No 78
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=28.88 E-value=1.6e+02 Score=27.57 Aligned_cols=57 Identities=18% Similarity=0.150 Sum_probs=41.1
Q ss_pred HHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 53 LLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 53 ~LlRLKq~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
++=-..-.|.+.|.|+++.++ .|.++...+-+.+++.-++.|+.++..+..++.++.
T Consensus 51 i~eas~~~~~~~~le~~~~~l--~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLe 107 (146)
T 2xnx_M 51 IDQASQDYNRANVLEKELEAI--TREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLE 107 (146)
T ss_dssp HHHHHHTTTTHHHHTTTTTTH--HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHhhhhhhhhhhHhhHHHH--HHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333334466778888888887 455666777777777778888888888888887765
No 79
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=28.81 E-value=95 Score=25.92 Aligned_cols=12 Identities=8% Similarity=0.102 Sum_probs=6.6
Q ss_pred hhhchhhhHHHH
Q 007188 59 QMIDSTTKEAEI 70 (614)
Q Consensus 59 q~~Daki~EaE~ 70 (614)
..++..+.|+|-
T Consensus 13 ~~Le~~l~e~E~ 24 (86)
T 1x8y_A 13 AAKEAKLRDLED 24 (86)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 345556666554
No 80
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=28.61 E-value=2.3e+02 Score=29.91 Aligned_cols=33 Identities=9% Similarity=0.236 Sum_probs=14.7
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 007188 85 QLNEAEDVITDLRSELRWVTDKLEKVKNNPLQP 117 (614)
Q Consensus 85 QL~eaed~v~~Lr~ELr~~~~eLEk~~~~~~qp 117 (614)
++...|.++..++..|..+...+.++......|
T Consensus 106 ~i~~l~~~~~~~~~~i~~l~~~i~~l~~~~~~~ 138 (409)
T 1m1j_C 106 TIQQLTDMHIMNSNKITQLKQKIAQLESHCQEP 138 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcc
Confidence 333333334444444555455444444444333
No 81
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=28.06 E-value=90 Score=24.26 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=22.7
Q ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 007188 77 RKVDELEAQLNEAEDVITDLRSELRWVTDKL 107 (614)
Q Consensus 77 rki~ELEaQL~eaed~v~~Lr~ELr~~~~eL 107 (614)
.++++|+.+-.+.+..|..|+.|+.++...|
T Consensus 29 ~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 29 KKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466677777777777888888888877655
No 82
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=28.03 E-value=1.7e+02 Score=32.40 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=18.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 87 NEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 87 ~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
.-++.++-++|.||..++..|-.+-.
T Consensus 345 ~~t~~~~~~~~~~~~~~n~~~~~~~~ 370 (551)
T 2b5u_A 345 AKAVQVYNSRKSELDAANKTLADAIA 370 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhhhhHHHHHHH
Confidence 35667788888888877777765543
No 83
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=27.31 E-value=71 Score=31.13 Aligned_cols=35 Identities=14% Similarity=0.292 Sum_probs=22.0
Q ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 78 KVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 78 ki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
.++.|+++|.+++.-+++|+..+.|+..+++.+|+
T Consensus 60 e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~Rk 94 (213)
T 4ani_A 60 ELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRR 94 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666666666666777777766664
No 84
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=27.19 E-value=38 Score=25.79 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=17.2
Q ss_pred hhHHHHHHHhhhHHHHHHHHHHHH
Q 007188 78 KVDELEAQLNEAEDVITDLRSELR 101 (614)
Q Consensus 78 ki~ELEaQL~eaed~v~~Lr~ELr 101 (614)
.|++||.++...|..|..|+..|+
T Consensus 45 ~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 45 YLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 377788887777777777776553
No 85
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=27.12 E-value=87 Score=27.46 Aligned_cols=33 Identities=15% Similarity=0.317 Sum_probs=21.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 80 DELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 80 ~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
++|..++......+..|+..+.....||+.+|+
T Consensus 85 ~~l~~~~~~e~~~~~~L~~~i~~Le~el~~~R~ 117 (117)
T 3kin_B 85 EEWKKKYEKEKEKNKALKSVIQHLEVELNRWRN 117 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 455555555556667777777777777777664
No 86
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=27.10 E-value=3.3e+02 Score=24.20 Aligned_cols=56 Identities=21% Similarity=0.319 Sum_probs=30.9
Q ss_pred HhhhhhhcHHHHH---HHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 007188 39 FEKDLSNTKDEAL---RLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTD 105 (614)
Q Consensus 39 ~~qeL~~~KeeaL---~~LlRLKq~~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~ 105 (614)
-+..|..+..+|- .+++-|+..++.+ -..+..+|.+++||+.. |..|..+|+.+..
T Consensus 30 Aq~~l~~~eaQAaTCNqTV~tL~~SL~ke----kaq~q~qq~~v~elqgE-------I~~Lnq~Lqda~~ 88 (99)
T 3ni0_A 30 TQDSLLQAETQANSCNLTVVTLQESLEKK----VSQALEQQARIKELENE-------VTKLNQELENLRI 88 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 3344444444443 3455665555432 12345566677776666 7777777777664
No 87
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=26.98 E-value=84 Score=27.97 Aligned_cols=39 Identities=13% Similarity=0.379 Sum_probs=34.7
Q ss_pred hhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 007188 75 KQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKNN 113 (614)
Q Consensus 75 ~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~~ 113 (614)
=.+|++.|+.++...+..+..++..+..+...|+++...
T Consensus 103 l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~ 141 (151)
T 2zdi_C 103 LEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQK 141 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999988753
No 88
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=26.24 E-value=4e+02 Score=24.82 Aligned_cols=36 Identities=17% Similarity=0.159 Sum_probs=16.9
Q ss_pred hhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 76 QRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 76 qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
++.+.+....|..|...-..+-.|+..++..++++.
T Consensus 129 ~k~~~~~~~~l~KaK~~Y~~~~~e~e~a~~~~~~~~ 164 (305)
T 2efl_A 129 QQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMD 164 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444455555555444443
No 89
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=26.20 E-value=64 Score=27.72 Aligned_cols=24 Identities=17% Similarity=0.400 Sum_probs=12.9
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHH
Q 007188 85 QLNEAEDVITDLRSELRWVTDKLE 108 (614)
Q Consensus 85 QL~eaed~v~~Lr~ELr~~~~eLE 108 (614)
++...+.+|..|..||++++.+++
T Consensus 38 e~~~~q~~i~~lE~eL~~~r~e~~ 61 (95)
T 3mov_A 38 EKDNSRRMLTDKEREMAEIRDQMQ 61 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555544
No 90
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=25.70 E-value=28 Score=26.87 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=15.2
Q ss_pred hhhhHHHHHHHhhhHHHHHHHHH
Q 007188 76 QRKVDELEAQLNEAEDVITDLRS 98 (614)
Q Consensus 76 qrki~ELEaQL~eaed~v~~Lr~ 98 (614)
..+|++||+++.+.+..|..|+.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~~ 70 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLTS 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 46778888887777776666543
No 91
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=25.56 E-value=3.4e+02 Score=30.20 Aligned_cols=44 Identities=9% Similarity=0.068 Sum_probs=28.4
Q ss_pred hhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 007188 76 QRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKNNPLQPVN 119 (614)
Q Consensus 76 qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~~~~qp~n 119 (614)
+++|+.-=.+|.-+|.+|+++++|++++.--+.-....+.-||.
T Consensus 123 KekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCs 166 (562)
T 3ghg_A 123 KRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCS 166 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 44444444677778888999999999987554433333444444
No 92
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=25.36 E-value=2.6e+02 Score=24.81 Aligned_cols=92 Identities=17% Similarity=0.217 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh-hhhh--cH---------HHHHHHHHHhhhhhchhhhHHHHhhHHh---------hhh
Q 007188 20 NTAREAAARIMASERQALRFEK-DLSN--TK---------DEALRLLVRVKQMIDSTTKEAEITSLTK---------QRK 78 (614)
Q Consensus 20 ntaKEAAaRVm~aERkA~~~~q-eL~~--~K---------eeaL~~LlRLKq~~Daki~EaE~~sl~~---------qrk 78 (614)
=+..|.|.+.=++-+--..|+. +|.. .+ ++.|..|..++.+-+.-+.=+|+..+.. ...
T Consensus 17 ~~I~evA~~~gvs~~tLR~Ye~~Gll~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sL~eIk~~l~~~~~~~~~~~~~ 96 (148)
T 3gpv_A 17 YTIGQVAKMQHLTISQIRYYDKQGLFPFLQRNEKGDRIFNEEALKYLEMILCLKNTGMPIQKIKQFIDWSMEGDSTILHR 96 (148)
T ss_dssp BCHHHHHHHTTCCHHHHHHHHHTTCCTTCEECTTCCEEBCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCGGGHHHH
T ss_pred eeHHHHHHHHCcCHHHHHHHHHCCCCCCCcCCCCCCeecCHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhhcCCCCHHHH
Confidence 3567788777777766666654 3442 22 4555555555554443333333333332 123
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 79 VDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 79 i~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
.+-|++|+.+.+.-|.+|+.-+..+...++..+
T Consensus 97 ~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~ 129 (148)
T 3gpv_A 97 LKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYE 129 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666666666665554
No 93
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=25.04 E-value=3.4e+02 Score=23.60 Aligned_cols=8 Identities=38% Similarity=0.202 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 007188 7 MVALKKAY 14 (614)
Q Consensus 7 l~ALkkAy 14 (614)
+.+|+.-|
T Consensus 8 ~~~l~~~~ 15 (284)
T 1c1g_A 8 MQMLKLDK 15 (284)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhH
Confidence 33444333
No 94
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=24.82 E-value=1.1e+02 Score=23.80 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=26.0
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 007188 79 VDELEAQLNEAEDVITDLRSELRWVTDKLEKV 110 (614)
Q Consensus 79 i~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (614)
+..||+.+...|+||..+..|+.|....++..
T Consensus 7 ~~~le~k~~~~e~iv~~l~~~v~~~~~~le~~ 38 (66)
T 3m0a_A 7 CESLEKKTATFENIVCVLNREVERVAMTAEAC 38 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44568888888999999888888888888765
No 95
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=24.70 E-value=1e+02 Score=31.66 Aligned_cols=36 Identities=17% Similarity=0.294 Sum_probs=20.5
Q ss_pred hHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHH
Q 007188 66 KEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELR 101 (614)
Q Consensus 66 ~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr 101 (614)
..-|..-+.+...|..|+++|...+..|..|...|.
T Consensus 15 ~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~ 50 (323)
T 1lwu_C 15 RILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLV 50 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555566666666666665555555544443
No 96
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=24.61 E-value=1.1e+02 Score=27.61 Aligned_cols=31 Identities=19% Similarity=0.402 Sum_probs=14.9
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 007188 79 VDELEAQLNEAEDVITDLRSELRWVTDKLEK 109 (614)
Q Consensus 79 i~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk 109 (614)
|++|-++|..||..++.-+.+..+++.++++
T Consensus 26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei~q 56 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQ 56 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555554444444444444443
No 97
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=24.34 E-value=3.3e+02 Score=23.18 Aligned_cols=36 Identities=14% Similarity=0.253 Sum_probs=19.0
Q ss_pred hHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHH
Q 007188 66 KEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWV 103 (614)
Q Consensus 66 ~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~ 103 (614)
.|.|+.+| ++||.-||..|..+++-+.+....|...
T Consensus 42 ~E~Ei~sL--~kk~~~lE~eld~~ee~L~ea~~kLee~ 77 (101)
T 3u1c_A 42 LEDDIVQL--EKQLRVTEDSRDQVLEELHKSEDSLLFA 77 (101)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555544 4556666666665555555544444433
No 98
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=23.61 E-value=2.2e+02 Score=27.48 Aligned_cols=46 Identities=15% Similarity=0.294 Sum_probs=33.3
Q ss_pred hhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcc
Q 007188 76 QRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKNNPLQPVNGQTT 123 (614)
Q Consensus 76 qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~~~~qp~n~q~~ 123 (614)
+...+.++++|..++.-+..++.+|..++..|+.+. ..-|.+|-..
T Consensus 121 ~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~--i~AP~~G~V~ 166 (369)
T 4dk0_A 121 KATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTK--ITSPIDGTVI 166 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSS--CCCSCCSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCE--EECCCCeEEE
Confidence 445666777788888888888899998888887654 3457777443
No 99
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=23.26 E-value=1.1e+02 Score=24.04 Aligned_cols=26 Identities=27% Similarity=0.511 Sum_probs=20.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHH
Q 007188 82 LEAQLNEAEDVITDLRSELRWVTDKL 107 (614)
Q Consensus 82 LEaQL~eaed~v~~Lr~ELr~~~~eL 107 (614)
||..-+..|.||+.||.|+-|+..|.
T Consensus 22 lerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 22 LERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 45555678899999999999887654
No 100
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A*
Probab=22.76 E-value=1.4e+02 Score=32.53 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=16.7
Q ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 78 KVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 78 ki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
.++||++++.+.++++++-..=..-..+||+.++
T Consensus 438 E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~ 471 (496)
T 2nov_A 438 EEAELREKIAMLAAIIGDERTMYNLMKKELREVK 471 (496)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3455555555555555543222334445555554
No 101
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=22.62 E-value=74 Score=27.56 Aligned_cols=29 Identities=14% Similarity=0.417 Sum_probs=18.7
Q ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007188 77 RKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (614)
Q Consensus 77 rki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (614)
-+.+.|+++ ..+|+.|+++.+++|+.++.
T Consensus 7 ~~~~~l~~~-------~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 7 HRMKQLEDK-------VEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp --CHHHHHH-------HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHhC
Confidence 345667777 55666677777777777775
No 102
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=22.49 E-value=2.3e+02 Score=24.73 Aligned_cols=55 Identities=22% Similarity=0.327 Sum_probs=29.9
Q ss_pred HHHHHHhhhhhhcHHHHHHHHHHhhhhhchhhhHHHHhhH----HhhhhhHHHHHHHhhhHHHHHHH
Q 007188 34 RQALRFEKDLSNTKDEALRLLVRVKQMIDSTTKEAEITSL----TKQRKVDELEAQLNEAEDVITDL 96 (614)
Q Consensus 34 RkA~~~~qeL~~~KeeaL~~LlRLKq~~Daki~EaE~~sl----~~qrki~ELEaQL~eaed~v~~L 96 (614)
|....++-||.+ |...+..++..|.|+|-.-- .-|.+|.+||++|..+..-++..
T Consensus 43 r~iq~L~~el~~--------l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~q 101 (129)
T 3tnu_B 43 RMIQRLRAEIDN--------VKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARL 101 (129)
T ss_dssp HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344455555543 33456667777777765432 23556666777765554444443
No 103
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=22.36 E-value=3.2e+02 Score=25.04 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhcHHHHH
Q 007188 26 AARIMASERQALRFEKDLSNTKDEAL 51 (614)
Q Consensus 26 AaRVm~aERkA~~~~qeL~~~KeeaL 51 (614)
.+.|--.|.+.+.|+..|...+++..
T Consensus 12 ~~KvAElekkv~~lek~lk~~~e~d~ 37 (125)
T 2pms_C 12 QAKIAELENQVHRLEQELKEIDESES 37 (125)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCC---
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhh
Confidence 45666788899999998888877654
No 104
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=22.08 E-value=1.4e+02 Score=26.77 Aligned_cols=36 Identities=25% Similarity=0.335 Sum_probs=24.1
Q ss_pred HHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 73 LTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 73 l~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
-.|.++|.+||+++++++. .|+..++++...|++++
T Consensus 88 e~Q~~ri~~L~~E~~~~~~---el~~~v~e~e~ll~~v~ 123 (132)
T 1ykh_B 88 EEQLRKIDMLQKKLVEVED---EKIEAIKKKEKLMRHVD 123 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4678999999999888764 34444555555555544
No 105
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=21.93 E-value=1e+02 Score=25.08 Aligned_cols=47 Identities=11% Similarity=0.210 Sum_probs=32.7
Q ss_pred hhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 007188 63 STTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKV 110 (614)
Q Consensus 63 aki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (614)
.+..-+++-. .-..=|..|+.+.+..+.-+..|+.|...+...|..+
T Consensus 34 ~k~sK~~iL~-~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 34 EKASRAQILD-KATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp SCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555555443 2345688888888888888888888888888777654
No 106
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=21.57 E-value=1.9e+02 Score=29.38 Aligned_cols=83 Identities=16% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHHHHHH---------HHHHhhhhhhcHHHHHHHHHHhhhhhch---hhhHHHHhhHHhhhhhHHHHHHHhhhHHHH
Q 007188 26 AARIMASERQ---------ALRFEKDLSNTKDEALRLLVRVKQMIDS---TTKEAEITSLTKQRKVDELEAQLNEAEDVI 93 (614)
Q Consensus 26 AaRVm~aERk---------A~~~~qeL~~~KeeaL~~LlRLKq~~Da---ki~EaE~~sl~~qrki~ELEaQL~eaed~v 93 (614)
+.|+++.+|+ ...|+.|+.....=-=+-||+|.....+ ++...+.....-+++-++||.++...+...
T Consensus 304 ~~~l~~~~~~~~~~~~~~g~~eF~~Eve~L~~i~HrNLV~L~gyC~s~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~ 383 (487)
T 3oja_A 304 ADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAH 383 (487)
T ss_dssp HHHHHHHHHHHHCSCC-----CHHHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhhhcccccHHHHHHHHHHHhcccccchhhHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q 007188 94 TDLRSELRWVTDKLE 108 (614)
Q Consensus 94 ~~Lr~ELr~~~~eLE 108 (614)
.+.+.+++.....+|
T Consensus 384 ~~~~~~~~~~~~~~e 398 (487)
T 3oja_A 384 AELDGTLQQAVGQIE 398 (487)
T ss_dssp HHHHHHHHHHTTSSC
T ss_pred hhhhhhHHHhhchhh
No 107
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=21.56 E-value=3.9e+02 Score=23.57 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 007188 22 AREAAARIMASERQALRFE 40 (614)
Q Consensus 22 aKEAAaRVm~aERkA~~~~ 40 (614)
..|.|.+.=++-+--..|+
T Consensus 5 I~e~A~~~gvs~~tLR~Ye 23 (142)
T 3gp4_A 5 IKEASEKSGVSADTIRYYE 23 (142)
T ss_dssp HHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHH
Confidence 3455555555554444444
No 108
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=21.29 E-value=1.7e+02 Score=22.11 Aligned_cols=13 Identities=23% Similarity=0.427 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 007188 93 ITDLRSELRWVTD 105 (614)
Q Consensus 93 v~~Lr~ELr~~~~ 105 (614)
+..+..+|..+++
T Consensus 35 ~~~~~~~l~~~~~ 47 (60)
T 3htk_A 35 INEIFEKLNTIRD 47 (60)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 109
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=21.28 E-value=3.1e+02 Score=23.64 Aligned_cols=29 Identities=24% Similarity=0.254 Sum_probs=19.3
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007188 83 EAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (614)
Q Consensus 83 EaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (614)
|.||.++--.|..|+.||...+.-|..+.
T Consensus 61 ~~~L~e~~~kid~L~~el~K~q~~L~e~e 89 (98)
T 2ke4_A 61 EPQIAETLSNIERLKLEVQKYEAWLAEAE 89 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666667777777777776666663
No 110
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=21.20 E-value=1.2e+02 Score=25.21 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=9.0
Q ss_pred hhhhhHHHHHHHhhhHHHHHHHH
Q 007188 75 KQRKVDELEAQLNEAEDVITDLR 97 (614)
Q Consensus 75 ~qrki~ELEaQL~eaed~v~~Lr 97 (614)
+||.++.|++++...|.-|+.|.
T Consensus 20 eqrEle~le~~Ie~LE~~i~~le 42 (89)
T 2lw1_A 20 LQRELEQLPQLLEDLEAKLEALQ 42 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444333333333333
No 111
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=20.74 E-value=1e+02 Score=23.99 Aligned_cols=39 Identities=21% Similarity=0.191 Sum_probs=27.2
Q ss_pred hhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHH
Q 007188 65 TKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWV 103 (614)
Q Consensus 65 i~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~ 103 (614)
-..||..--.=|+.|+.||..|-........++.||...
T Consensus 7 aefAERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~t 45 (52)
T 2z5i_A 7 NYHLENEVARLKKLVDDLEDELYAQKLKYKAISEELDHA 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 345666666667788888888777776666676666654
No 112
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=20.14 E-value=3.2e+02 Score=23.24 Aligned_cols=45 Identities=16% Similarity=0.144 Sum_probs=28.5
Q ss_pred hhhhhcHHHHHHHHHHhhhhhch-----hhhHHHHhhHHhhhhhHHHHHHHh
Q 007188 41 KDLSNTKDEALRLLVRVKQMIDS-----TTKEAEITSLTKQRKVDELEAQLN 87 (614)
Q Consensus 41 qeL~~~KeeaL~~LlRLKq~~Da-----ki~EaE~~sl~~qrki~ELEaQL~ 87 (614)
.+++.+|.+|=.++..++..|+. ++.+.|+..+ ...|++|+.-|.
T Consensus 14 re~iEarN~aEsliy~~e~~L~e~~~~dkl~~eek~~I--~~~i~el~~~L~ 63 (120)
T 2p32_A 14 LVPRGSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKI--EDKCDEILKWLD 63 (120)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTCTTTGGGSCHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchhhhccCCHHHHHHH--HHHHHHHHHHHH
Confidence 46777888888888888887754 4555555433 234455555444
Done!