Query 007189
Match_columns 613
No_of_seqs 186 out of 820
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 19:25:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007189.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007189hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4djk_A Probable glutamate/gamm 96.0 0.064 2.2E-06 57.3 13.6 124 15-145 100-237 (511)
2 3gia_A Uncharacterized protein 95.7 0.05 1.7E-06 57.0 11.2 108 13-131 96-208 (444)
3 3l1l_A Arginine/agmatine antip 94.4 0.052 1.8E-06 56.8 6.8 108 15-130 98-210 (445)
4 2l6p_A PHAC1, PHAC2 and PHAD g 30.6 20 0.00069 32.2 1.9 22 583-606 30-51 (124)
5 2bm3_A Type 2 cohesin, scaffol 29.7 14 0.00049 34.9 0.7 12 88-99 44-55 (166)
6 3kcp_B Cellulosome anchoring p 29.6 14 0.00049 35.4 0.7 8 90-97 58-65 (187)
7 3luu_A Uncharacterized protein 24.8 25 0.00084 30.1 1.3 21 583-603 35-55 (101)
8 2l6n_A Uncharacterized protein 23.8 31 0.0011 31.4 1.8 15 583-597 37-51 (132)
9 1nrp_R Receptor based peptide 20.0 34 0.0012 22.4 0.9 17 162-178 4-20 (26)
10 2rdd_B UPF0092 membrane protei 19.9 1.7E+02 0.0057 20.7 4.6 33 321-353 1-33 (37)
No 1
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=95.99 E-value=0.064 Score=57.28 Aligned_cols=124 Identities=16% Similarity=0.169 Sum_probs=64.2
Q ss_pred cccchhHHHHhhhccccc--CCCCCCc--eeehhHHHHHHHHHhhccccccccccchhhH----HHHHHHHHHHhhhhhc
Q 007189 15 ILTPAISVLSASGGIKVD--HPHMSNG--VVVLVAVVILVGLFSLQHYGTDRVGWLFAPI----VLLWFLLIGGIGMLNI 86 (613)
Q Consensus 15 vlTPAiSVLSAveGl~v~--~p~~~~~--~vv~is~~ILv~LF~~Q~~GT~kvg~~F~Pi----m~~Wf~~i~~~Giyni 86 (613)
+++.+.+..++.+-++.. .|++..+ ....+++++++++..+--+|....+.+..-. +++-++.+.++|++.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 179 (511)
T 4djk_A 100 AIGFIPMLYFVLGALSYILKWPALNEDPITKTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYL 179 (511)
T ss_dssp HHHTHHHHHHHHHHHHTTTTCGGGTSCSSHHHHHHHHHHHHHHHHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccccCcHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444434433 4555422 1456788888888899999987776554322 2223455556677666
Q ss_pred cccCccee----EecChHHHHHHHHhcCcceeeeecceeeeecchhhhhccCCCCC--ccceeee
Q 007189 87 WKYDSSVL----KAFSPVYIYRYFRRGGRDGWTSLGGIMLSITGTEALFADLAHFP--VSAIQIA 145 (613)
Q Consensus 87 ~~~~p~Vl----~A~nP~y~~~f~~~~g~~g~~~LG~v~L~iTG~EAlyADlGHF~--~~~I~~a 145 (613)
...+|.-+ ..+.|.+ .+..+|..+..++.+.+|-|+.-.=-+-.- +|.+..|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~a 237 (511)
T 4djk_A 180 HSGAPVAIEMDSKTFFPDF-------SKVGTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLA 237 (511)
T ss_dssp C------------CCCCCT-------TSTTTTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHH
T ss_pred hcCCcccccCcccccCCCc-------ccchHHHHHHHHHHHHhhHHHHHHHHHhccCcccchhHH
Confidence 54333221 1122211 123456667778899999998644333332 3444444
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=95.71 E-value=0.05 Score=56.99 Aligned_cols=108 Identities=17% Similarity=0.168 Sum_probs=58.1
Q ss_pred CccccchhHHHHhhhcccccCCCCCCc-eeehhHHHHHHHHHhhccccccccc---cchhhHHHHHHHHHHHhhhhhccc
Q 007189 13 DGILTPAISVLSASGGIKVDHPHMSNG-VVVLVAVVILVGLFSLQHYGTDRVG---WLFAPIVLLWFLLIGGIGMLNIWK 88 (613)
Q Consensus 13 DGvlTPAiSVLSAveGl~v~~p~~~~~-~vv~is~~ILv~LF~~Q~~GT~kvg---~~F~Pim~~Wf~~i~~~Giyni~~ 88 (613)
+-+++.|....+..+=++...|...++ ....+++++++++..+.-+|....+ ..+..+.++=++.+.+.|+.+.
T Consensus 96 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~-- 173 (444)
T 3gia_A 96 SYVISIALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITI-- 173 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--
Confidence 345566666665555454434433222 2345678888888888888877655 4455555555555555666543
Q ss_pred cCcceeEe-cChHHHHHHHHhcCcceeeeecceeeeecchhhhh
Q 007189 89 YDSSVLKA-FSPVYIYRYFRRGGRDGWTSLGGIMLSITGTEALF 131 (613)
Q Consensus 89 ~~p~Vl~A-~nP~y~~~f~~~~g~~g~~~LG~v~L~iTG~EAly 131 (613)
+|+-+.. ++|.-... -+..+...+.+.+|-|+.-
T Consensus 174 -~~~~~~~~~~~~g~~~--------~~~~~~~~~~a~~G~e~~~ 208 (444)
T 3gia_A 174 -HPSYVIPDLAPSAVSG--------MIFASAIFFLSYMGFGVIT 208 (444)
T ss_dssp -CGGGTSCCCSHHHHHH--------HHHHHHHGGGGGTHHHHHH
T ss_pred -ChhhcCCCCCCcchHH--------HHHHHHHHHHHHHhHHHHH
Confidence 3432221 23321111 1122344567889999763
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=94.44 E-value=0.052 Score=56.78 Aligned_cols=108 Identities=15% Similarity=0.123 Sum_probs=52.1
Q ss_pred cccchhHHHHhhhcccccCCCCCCce-eehhHHHHHHHHHhhccccccccccc---hhhHHHHHHHHHHHhhhhhccccC
Q 007189 15 ILTPAISVLSASGGIKVDHPHMSNGV-VVLVAVVILVGLFSLQHYGTDRVGWL---FAPIVLLWFLLIGGIGMLNIWKYD 90 (613)
Q Consensus 15 vlTPAiSVLSAveGl~v~~p~~~~~~-vv~is~~ILv~LF~~Q~~GT~kvg~~---F~Pim~~Wf~~i~~~Giyni~~~~ 90 (613)
+++.+....+..+=++...|...+++ ...+++++++++..+--+|....+.+ +.++.++=++.+.+.|+. ..+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~---~~~ 174 (445)
T 3l1l_A 98 WIGNIAMVVIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWF---WFR 174 (445)
T ss_dssp HHHHHHHHHHHHHHTTTTCGGGGSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTST---TCC
T ss_pred HHHHHHHHHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhC
Confidence 44455455555555555555543321 33466777777778888887766654 444444333334444443 334
Q ss_pred ccee-EecChHHHHHHHHhcCcceeeeecceeeeecchhhh
Q 007189 91 SSVL-KAFSPVYIYRYFRRGGRDGWTSLGGIMLSITGTEAL 130 (613)
Q Consensus 91 p~Vl-~A~nP~y~~~f~~~~g~~g~~~LG~v~L~iTG~EAl 130 (613)
|+.+ ..++|.-.- ....-+..+...+.+.+|-|+.
T Consensus 175 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~af~G~e~~ 210 (445)
T 3l1l_A 175 GETYMAAWNVSGLG-----TFGAIQSTLNVTLWSFIGVESA 210 (445)
T ss_dssp CCCCCCC----------------HHHHHHHHHHTTTTTTHH
T ss_pred hhhcccccCccCCc-----cHHHHHHHHHHHHHHHHhHHHH
Confidence 5443 234442100 0001112233456777888865
No 4
>2l6p_A PHAC1, PHAC2 and PHAD genes; DUF971, structural genomics, PSI-biology, protein structure initiative, joint center for structural genomics; NMR {Pseudomonas aeruginosa}
Probab=30.64 E-value=20 Score=32.15 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=15.8
Q ss_pred HHHHHhhccCCCcccccCCCCeEe
Q 007189 583 YAFLRKICRENSVIFNVPHESLLN 606 (613)
Q Consensus 583 Y~FLRkNcR~~~~~L~IPh~~LlE 606 (613)
|.|||.||+++...-. .++++.
T Consensus 30 ~~wLRd~Cpcaec~~~--~qr~l~ 51 (124)
T 2l6p_A 30 AEFLRVHSPSAEVQGH--GNPVLQ 51 (124)
T ss_dssp HHHHHHTCCCSSCCSC--CCCCCC
T ss_pred HHHHHhcCCCcccCCC--Cccccc
Confidence 5899999999876543 555543
No 5
>2bm3_A Type 2 cohesin, scaffolding dockerin binding protein A; cellulosome, nuclear protein; 1.8A {Clostridium thermocellum} SCOP: b.2.2.2
Probab=29.72 E-value=14 Score=34.91 Aligned_cols=12 Identities=50% Similarity=0.775 Sum_probs=5.8
Q ss_pred ccCcceeEecCh
Q 007189 88 KYDSSVLKAFSP 99 (613)
Q Consensus 88 ~~~p~Vl~A~nP 99 (613)
+|||+||+|+||
T Consensus 44 KYDP~VLqaVn~ 55 (166)
T 2bm3_A 44 VYDPKVLMAVDP 55 (166)
T ss_dssp ECCTTTEEEECT
T ss_pred EECccceEeecC
Confidence 344555555444
No 6
>3kcp_B Cellulosome anchoring protein, cohesin region; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} SCOP: b.2.2.2 PDB: 3p0d_B 2b59_A 4fl4_B
Probab=29.64 E-value=14 Score=35.38 Aligned_cols=8 Identities=50% Similarity=0.571 Sum_probs=2.9
Q ss_pred CcceeEec
Q 007189 90 DSSVLKAF 97 (613)
Q Consensus 90 ~p~Vl~A~ 97 (613)
||+||+|+
T Consensus 58 DP~VLqaV 65 (187)
T 3kcp_B 58 DPKVLMAV 65 (187)
T ss_dssp CTTTEEEE
T ss_pred ChhHeeec
Confidence 33333333
No 7
>3luu_A Uncharacterized protein; AFE_2189, PFAM DUF971 family, structural genomics, joint CEN structural genomics, JCSG; HET: MSE; 1.93A {Acidithiobacillus ferrooxidans}
Probab=24.80 E-value=25 Score=30.13 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=10.0
Q ss_pred HHHHHhhccCCCcccccCCCC
Q 007189 583 YAFLRKICRENSVIFNVPHES 603 (613)
Q Consensus 583 Y~FLRkNcR~~~~~L~IPh~~ 603 (613)
|.|||.||+.+...-.-+.++
T Consensus 35 ~~wLRd~c~ca~c~~~~t~qr 55 (101)
T 3luu_A 35 FEHLRVECPCAECKGHTPDQA 55 (101)
T ss_dssp HHHHHHTCCCC----------
T ss_pred HHHHHhhCCChhhcCccCCcc
Confidence 789999999776654433333
No 8
>2l6n_A Uncharacterized protein YP_001092504.1; PJ06155C, DUF971, structural genomics, PSI-biology, protein initiative; NMR {Shewanella loihica}
Probab=23.78 E-value=31 Score=31.36 Aligned_cols=15 Identities=20% Similarity=0.071 Sum_probs=12.3
Q ss_pred HHHHHhhccCCCccc
Q 007189 583 YAFLRKICRENSVIF 597 (613)
Q Consensus 583 Y~FLRkNcR~~~~~L 597 (613)
|.|||.||+.+...-
T Consensus 37 ~~wLRd~Cpcaec~~ 51 (132)
T 2l6n_A 37 CELLRVYSPSAEVHG 51 (132)
T ss_dssp HHHHHHSCSCSSSSS
T ss_pred HHHHHhcCCCcccCC
Confidence 689999999976553
No 9
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=20.04 E-value=34 Score=22.44 Aligned_cols=17 Identities=12% Similarity=0.550 Sum_probs=14.6
Q ss_pred hhhhcccCCcccCcccc
Q 007189 162 AAYLMNHQDHVVDAFYR 178 (613)
Q Consensus 162 ~A~l~~~p~~~~npFy~ 178 (613)
-++|++||++.-.||+.
T Consensus 4 rsfllrnpndkyepfwe 20 (26)
T 1nrp_R 4 RSFLLRNPNDKYEPFWE 20 (26)
T ss_pred hhhhhcCCCcccCcccc
Confidence 36899999999999986
No 10
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=19.91 E-value=1.7e+02 Score=20.72 Aligned_cols=33 Identities=12% Similarity=0.152 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHhHHHHHHHHHhc
Q 007189 321 GGWVPLVIAAAFLVIMYVWHYGTVKRYEFEMHS 353 (613)
Q Consensus 321 GGW~pl~ia~~~~~im~~W~~G~~~~~~~~~~~ 353 (613)
|||..++.-++++.+||..-.-..+|.+.+.++
T Consensus 1 ~~~~~~l~~v~~~~ifYFl~iRPQ~Kr~K~~~~ 33 (37)
T 2rdd_B 1 SPMSLILMLVVFGLIFYFMILRPQQKRTKEHKK 33 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Done!