Query 007189
Match_columns 613
No_of_seqs 186 out of 820
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 19:25:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007189.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007189hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74h1 f.23.27.1 (H:3-29) Pet 18.6 37 0.0027 21.0 2.4 20 322-341 5-24 (27)
2 d1or7a2 a.177.1.1 (A:-1-111) S 14.8 44 0.0032 26.2 2.8 24 571-594 73-96 (113)
3 d2yvxa3 f.57.1.1 (A:276-448) M 14.8 30 0.0022 30.5 1.8 119 152-283 12-132 (173)
4 d2h8pc1 f.14.1.1 (C:22-78) Pot 13.1 30 0.0022 25.3 1.1 40 152-193 15-54 (57)
5 d2a65a1 f.54.1.1 (A:5-513) Na( 8.3 2.8E+02 0.021 27.1 7.1 53 296-349 376-431 (509)
6 d1f2qa2 b.1.1.4 (A:86-174) IgE 8.3 85 0.0062 23.3 2.3 30 418-447 46-75 (89)
7 d1iray2 b.1.1.4 (Y:102-204) Ty 8.2 86 0.0062 24.4 2.3 26 420-445 57-82 (103)
8 d1krha2 c.25.1.2 (A:206-338) B 6.8 1.4E+02 0.01 23.5 3.2 41 204-244 17-57 (133)
9 d1f97a1 b.1.1.1 (A:27-128) Jun 6.3 99 0.0072 22.9 1.7 25 423-447 67-91 (102)
10 d1biha4 b.1.1.4 (A:307-395) He 5.9 1.5E+02 0.011 21.6 2.6 22 420-441 53-74 (89)
No 1
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=18.63 E-value=37 Score=20.97 Aligned_cols=20 Identities=35% Similarity=0.886 Sum_probs=15.4
Q ss_pred ChHHHHHHHHHHHHHHHHHH
Q 007189 322 GWVPLVIAAAFLVIMYVWHY 341 (613)
Q Consensus 322 GW~pl~ia~~~~~im~~W~~ 341 (613)
||+.++.-+.-..-|..|-+
T Consensus 5 gwv~llvvftwsiamvvwgr 24 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWGR 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHhhheeeeEEEcc
Confidence 78888877777777888854
No 2
>d1or7a2 a.177.1.1 (A:-1-111) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=14.81 E-value=44 Score=26.16 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=21.0
Q ss_pred CchHHHHHHHHHHHHHHhhccCCC
Q 007189 571 SKFYKKIAIDYIYAFLRKICRENS 594 (613)
Q Consensus 571 Ss~lKKivIn~~Y~FLRkNcR~~~ 594 (613)
.+|+.+++.|.+++++|++.|.+.
T Consensus 73 ~~wl~~I~~n~~~d~~R~~~r~~~ 96 (113)
T d1or7a2 73 YTWLYRIAVNTAKNYLVAQGRRPP 96 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCC
Confidence 467999999999999999998754
No 3
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=14.77 E-value=30 Score=30.55 Aligned_cols=119 Identities=13% Similarity=0.185 Sum_probs=68.3
Q ss_pred hHHHhhhccc--hhhhcccCCcccCcccccccCcchHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHcCCCCceeEEecC
Q 007189 152 PCLLLAYSGQ--AAYLMNHQDHVVDAFYRSIPDSIYWPVFIVATAAAIVASQATISATFSIIKQALALGCFPRVKVVHTS 229 (613)
Q Consensus 152 P~L~L~Y~GQ--~A~l~~~p~~~~npFy~~~P~~~~~P~~vlAtlAaIIASQA~Isg~FSi~~Qa~~Lg~fPr~ki~hTS 229 (613)
|-|+++.+|+ +|+++.+-|+.-+.+-. =..|.|+ ++-.+.-++||+.. ++-+++++|..-+-. .-
T Consensus 12 pWL~i~l~~~~~~a~ii~~Fe~~l~~~~~---La~fiPl--i~~~gGN~G~Qs~t-----i~iR~La~g~i~~~~---~~ 78 (173)
T d2yvxa3 12 RWLVILILTGMVTSSILQGFESVLEAVTA---LAFYVPV--LLGTGGNTGNQSAT-----LIIRALATRDLDLRD---WR 78 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTTTTTTS---CCCCSHH--HHHHHHHHHHHHHH-----HHHHHHHTTCSCSSS---HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH--HhcCCchHHHHHHH-----HHHHHHhcccccchh---HH
Confidence 4555555555 56777766554332211 1356666 67788888999874 888999999643211 11
Q ss_pred CccCCceecchhhHHHHHHhheeEEeecCchhhhhhhhchhhhHHHHHHHHHHH
Q 007189 230 KKFLGQIYIPDINWILMILCIAVTAGFKNQSQIGNAYGTAVVIVMLATTLLMTL 283 (613)
Q Consensus 230 ~~~~GQIYiP~vNw~Lm~~~l~v~~~F~~s~~l~~AYGiaV~~~m~iTT~l~~~ 283 (613)
+...-++.+-.+|=+.+...+.....+.+...++-+=|++...+|.+.+++=++
T Consensus 79 ~~l~kE~~vgll~G~~l~~i~~~~~~~~~~~~l~~vi~~sl~~~~~ia~~~G~~ 132 (173)
T d2yvxa3 79 RVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIVFFANLVGAM 132 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122344566666665555444444445555556666666666666655555433
No 4
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=13.09 E-value=30 Score=25.34 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=26.7
Q ss_pred hHHHhhhccchhhhcccCCcccCcccccccCcchHHHHHHHH
Q 007189 152 PCLLLAYSGQAAYLMNHQDHVVDAFYRSIPDSIYWPVFIVAT 193 (613)
Q Consensus 152 P~L~L~Y~GQ~A~l~~~p~~~~npFy~~~P~~~~~P~~vlAt 193 (613)
-++++--++=+.|+.++.. ++.-|.++|+.+.|-++-+.|
T Consensus 15 ~~i~i~~~s~~~y~~E~~~--~~~~f~sip~a~WWaivT~TT 54 (57)
T d2h8pc1 15 LVIVLLAGSYLAVLAERGA--PGAQLITYPRALWWACETATT 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHTTS--TTCCCCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCC--CCccccccchhhhhheeeeec
Confidence 3445555566677777754 334599999999997765543
No 5
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=8.33 E-value=2.8e+02 Score=27.05 Aligned_cols=53 Identities=15% Similarity=0.269 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccC---CChHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 007189 296 VLIFTALSLVVECTYFSAVLFKVDQ---GGWVPLVIAAAFLVIMYVWHYGTVKRYEF 349 (613)
Q Consensus 296 ~~~~~~~f~~ie~~f~sa~l~K~~~---GGW~pl~ia~~~~~im~~W~~G~~~~~~~ 349 (613)
.+...+.+...=..+++.+.....| ++ +.+.+.+.+.++...|.||.++..+.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~l~~~~l~e~i~v~w~yg~~r~~~d 431 (509)
T d2a65a1 376 LWTAAIVFFSAHLVMFLNKSLDEMDFWAGT-IGVVFFGLTELIIFFWIFGADKAWEE 431 (509)
T ss_dssp HHHHHHHHHHHHHHHHBTTHHHHHHHHTTT-HHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hheeEEEEhhhhHHHHhcchHHHHHHHHHH-HHHHHHHHHHHheeeeEecHHHHHHH
Confidence 3333444444444444444333322 34 46667788889999999999887653
No 6
>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.32 E-value=85 Score=23.32 Aligned_cols=30 Identities=10% Similarity=0.149 Sum_probs=23.6
Q ss_pred CCCceEEEEEecCCCCcEEEEEEEeeeccc
Q 007189 418 PEEERFLVKRIGPKNFHMFRCVARYGYKDL 447 (613)
Q Consensus 418 ~~~eR~~v~~~~~~~~~~yR~vvRYGY~D~ 447 (613)
....++.+..+...+.|.|+|.++.++.+.
T Consensus 46 ~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~ 75 (89)
T d1f2qa2 46 YENHNISITNATVEDSGTYYCTGKVWQLDY 75 (89)
T ss_dssp CCSSEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred cccceEEEeeeeeecCcEEEEEEEeCCCCe
Confidence 345678888888777899999999887543
No 7
>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.25 E-value=86 Score=24.36 Aligned_cols=26 Identities=27% Similarity=0.582 Sum_probs=21.2
Q ss_pred CceEEEEEecCCCCcEEEEEEEeeec
Q 007189 420 EERFLVKRIGPKNFHMFRCVARYGYK 445 (613)
Q Consensus 420 ~eR~~v~~~~~~~~~~yR~vvRYGY~ 445 (613)
+..+.+..+...+.|.|+|++++.|.
T Consensus 57 ~~~L~I~~v~~~D~G~Y~C~a~n~~~ 82 (103)
T d1iray2 57 KDRLIVMNVAEKHRGNYTCHASYTYL 82 (103)
T ss_dssp TTEEEESSCCGGGCEEEEEEEEEEET
T ss_pred CCEEEEcccccccCcEEEEEEEECcC
Confidence 45678888888888999999998764
No 8
>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}
Probab=6.76 E-value=1.4e+02 Score=23.47 Aligned_cols=41 Identities=12% Similarity=0.154 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHcCCCCceeEEecCCccCCceecchhhHH
Q 007189 204 ISATFSIIKQALALGCFPRVKVVHTSKKFLGQIYIPDINWI 244 (613)
Q Consensus 204 Isg~FSi~~Qa~~Lg~fPr~ki~hTS~~~~GQIYiP~vNw~ 244 (613)
||-..|+++++.+.+.-+++.++|..+....-+|--+...+
T Consensus 17 ItP~~s~l~~~~~~~~~~~i~l~~~~r~~~d~~~~~el~~l 57 (133)
T d1krha2 17 IAPFLSMLQVLEQKGSEHPVRLVFGVTQDCDLVALEQLDAL 57 (133)
T ss_dssp HHHHHHHHHHHHHHCCSSCEEEEEEESSGGGCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCceEEEEeecchhHHHHHHHHHHH
No 9
>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.29 E-value=99 Score=22.95 Aligned_cols=25 Identities=8% Similarity=0.094 Sum_probs=0.0
Q ss_pred EEEEEecCCCCcEEEEEEEeeeccc
Q 007189 423 FLVKRIGPKNFHMFRCVARYGYKDL 447 (613)
Q Consensus 423 ~~v~~~~~~~~~~yR~vvRYGY~D~ 447 (613)
+.+.++...+.|.|+|.++..+.+.
T Consensus 67 L~I~~v~~~D~G~Y~C~a~n~~g~~ 91 (102)
T d1f97a1 67 ITFSSVTRKDNGEYTCMVSEEGGQN 91 (102)
T ss_dssp EEESCCCGGGCEEEEEEEEETTSSS
T ss_pred EEEeECCccCCEEEEEEEEECCCCE
No 10
>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}
Probab=5.86 E-value=1.5e+02 Score=21.59 Aligned_cols=22 Identities=14% Similarity=0.366 Sum_probs=0.0
Q ss_pred CceEEEEEecCCCCcEEEEEEE
Q 007189 420 EERFLVKRIGPKNFHMFRCVAR 441 (613)
Q Consensus 420 ~eR~~v~~~~~~~~~~yR~vvR 441 (613)
+..+.+..+...+.|.|+|+++
T Consensus 53 ~~~L~i~~v~~~d~G~Y~C~a~ 74 (89)
T d1biha4 53 DSGLVIKGVKNGDKGYYGCRAT 74 (89)
T ss_dssp TTEEEESSCCSTTCEEEEEEEE
T ss_pred eeeEEECCCChhhCEEEEEEEE
Done!