BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007190
(613 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 450 bits (1157), Expect = e-126, Method: Compositional matrix adjust.
Identities = 231/445 (51%), Positives = 312/445 (70%), Gaps = 22/445 (4%)
Query: 167 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA 226
TFKDV G ++A +EL EVVE+LK+PSKF R+G ++PKGILL G PGTGKTLLA+A+AGEA
Sbjct: 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA 73
Query: 227 GVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG---- 282
VPFF+ +GS+F E+FVGVGA RVR LF AK APCI+FIDEIDAVG R G
Sbjct: 74 NVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHD 133
Query: 283 HTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQE 342
++TL+QLLVEMDGF+ EGII+MAATN PDILDPAL RPGRFD+ IVV PD+ GR++
Sbjct: 134 EREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKK 193
Query: 343 ILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAK 402
ILE++ ++KPLA+DV+++ IA+ TPGF GADL NLVN AA+ AA +G +K+T + E A
Sbjct: 194 ILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAI 253
Query: 403 DRILMGTERKTMFISEESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPRG-SALGMVTQ 461
DR++ G RK++ IS K++ AYHE+GHA+V+ P+H+ +I+PRG ALG
Sbjct: 254 DRVIAGPARKSLLISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGYTLH 313
Query: 462 LPSSDETSVSQKQLLARLDVCMGGRVAEELIFGRDHITTGASSDLHSATELAHYMVSNCG 521
LP D+ VS+ +LL +L +GGR AEE++FG +T+GA++D+ ATE+A MV G
Sbjct: 314 LPEEDKYLVSRNELLDKLTALLGGRAAEEVVFG--DVTSGAANDIERATEIARNMVCQLG 371
Query: 522 MSDAIGPVHIKDRP---------------SSEMQSRIDAEVVKLLREAYDRVKALLKKHE 566
MS+ +GP+ S E+ S+ID EV K++ Y+R K +++K+
Sbjct: 372 MSEELGPLAWGKEEQEVFLGKEITRLRNYSEEVASKIDEEVKKIVTNCYERAKEIIRKYR 431
Query: 567 KQLHALANALLEYETLSAEEIKRIL 591
KQL + LLE ET+ +E++RIL
Sbjct: 432 KQLDNIVEILLEKETIEGDELRRIL 456
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 447 bits (1149), Expect = e-125, Method: Compositional matrix adjust.
Identities = 230/445 (51%), Positives = 311/445 (69%), Gaps = 22/445 (4%)
Query: 167 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA 226
TFKDV G ++A +EL EVVE+LK+PSKF R+G ++PKGILL G PGTG TLLA+A+AGEA
Sbjct: 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAGEA 73
Query: 227 GVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG---- 282
VPFF+ +GS+F E+FVGVGA RVR LF AK APCI+FIDEIDAVG R G
Sbjct: 74 NVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHD 133
Query: 283 HTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQE 342
++TL+QLLVEMDGF+ EGII+MAATN PDILDPAL RPGRFD+ IVV PD+ GR++
Sbjct: 134 EREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKK 193
Query: 343 ILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAK 402
ILE++ ++KPLA+DV+++ IA+ TPGF GADL NLVN AA+ AA +G +K+T + E A
Sbjct: 194 ILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAI 253
Query: 403 DRILMGTERKTMFISEESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPRG-SALGMVTQ 461
DR++ G RK++ IS K++ AYHE+GHA+V+ P+H+ +I+PRG ALG
Sbjct: 254 DRVIAGPARKSLLISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGYTLH 313
Query: 462 LPSSDETSVSQKQLLARLDVCMGGRVAEELIFGRDHITTGASSDLHSATELAHYMVSNCG 521
LP D+ VS+ +LL +L +GGR AEE++FG +T+GA++D+ ATE+A MV G
Sbjct: 314 LPEEDKYLVSRNELLDKLTALLGGRAAEEVVFG--DVTSGAANDIERATEIARNMVCQLG 371
Query: 522 MSDAIGPVHIKDRP---------------SSEMQSRIDAEVVKLLREAYDRVKALLKKHE 566
MS+ +GP+ S E+ S+ID EV K++ Y+R K +++K+
Sbjct: 372 MSEELGPLAWGKEEQEVFLGKEITRLRNYSEEVASKIDEEVKKIVTNCYERAKEIIRKYR 431
Query: 567 KQLHALANALLEYETLSAEEIKRIL 591
KQL + LLE ET+ +E++RIL
Sbjct: 432 KQLDNIVEILLEKETIEGDELRRIL 456
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 403 bits (1035), Expect = e-112, Method: Compositional matrix adjust.
Identities = 230/450 (51%), Positives = 306/450 (68%), Gaps = 21/450 (4%)
Query: 159 VMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLL 218
V+ E TFKDV G ++AK+EL E+VE+LKNPS+F +G ++PKG+LL G PG GKT L
Sbjct: 21 VLTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHL 80
Query: 219 AKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRK 278
A+A+AGEA VPF +GS+F EMFVGVGA RVR LF+ AK+ APCI+FIDEIDAVG R
Sbjct: 81 ARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRG 140
Query: 279 QWEG----HTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPN 334
G ++TL+QLLVEMDGFE++ I++MAATN PDILDPAL RPGRFDR I +
Sbjct: 141 SGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDA 200
Query: 335 PDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLT 394
PDV+GR++IL ++ + KPLA+DVD+ +A+ TPGF GADL NL+N AA+ AA +G K+T
Sbjct: 201 PDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKIT 260
Query: 395 ATELEFAKDRILMGTERKTMFISEESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPRGS 454
+LE A DR++M +K++ +S +++TAYHE+GHA+ A E A +HK TI+PRG
Sbjct: 261 MKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADGVHKVTIVPRGR 320
Query: 455 ALGMVTQLP-SSDETSVSQKQLLARLDVCMGGRVAEELIFGRDHITTGASSDLHSATELA 513
ALG + +P D S+K+LL ++ V + GR AEE++F D +TTGA +D ATELA
Sbjct: 321 ALGFM--MPRREDMLHWSRKRLLDQIAVALAGRAAEEIVF--DDVTTGAENDFRQATELA 376
Query: 514 HYMVSNCGMSDAIGPVHIKDRP------------SSEMQSRIDAEVVKLLREAYDRVKAL 561
M++ GM GPV R S E RID V +L+ E Y RVKAL
Sbjct: 377 RRMITEWGMHPEFGPVAYAVREDTYLGGYDVRQYSEETAKRIDEAVRRLIEEQYQRVKAL 436
Query: 562 LKKHEKQLHALANALLEYETLSAEEIKRIL 591
L + + L +A LLE ETL+AEE +R++
Sbjct: 437 LLEKREVLERVAETLLERETLTAEEFQRVV 466
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 403 bits (1035), Expect = e-112, Method: Compositional matrix adjust.
Identities = 230/450 (51%), Positives = 306/450 (68%), Gaps = 21/450 (4%)
Query: 159 VMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLL 218
V+ E TFKDV G ++AK+EL E+VE+LKNPS+F +G ++PKG+LL G PG GKT L
Sbjct: 30 VLTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHL 89
Query: 219 AKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRK 278
A+A+AGEA VPF +GS+F EMFVGVGA RVR LF+ AK+ APCI+FIDEIDAVG R
Sbjct: 90 ARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRG 149
Query: 279 QWEG----HTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPN 334
G ++TL+QLLVEMDGFE++ I++MAATN PDILDPAL RPGRFDR I +
Sbjct: 150 SGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDA 209
Query: 335 PDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLT 394
PDV+GR++IL ++ + KPLA+DVD+ +A+ TPGF GADL NL+N AA+ AA +G K+T
Sbjct: 210 PDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKIT 269
Query: 395 ATELEFAKDRILMGTERKTMFISEESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPRGS 454
+LE A DR++M +K++ +S +++TAYHE+GHA+ A E A +HK TI+PRG
Sbjct: 270 MKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADGVHKVTIVPRGR 329
Query: 455 ALGMVTQLP-SSDETSVSQKQLLARLDVCMGGRVAEELIFGRDHITTGASSDLHSATELA 513
ALG + +P D S+K+LL ++ V + GR AEE++F D +TTGA +D ATELA
Sbjct: 330 ALGFM--MPRREDMLHWSRKRLLDQIAVALAGRAAEEIVF--DDVTTGAENDFRQATELA 385
Query: 514 HYMVSNCGMSDAIGPVHIKDRP------------SSEMQSRIDAEVVKLLREAYDRVKAL 561
M++ GM GPV R S E RID V +L+ E Y RVKAL
Sbjct: 386 RRMITEWGMHPEFGPVAYAVREDTYLGGYDVRQYSEETAKRIDEAVRRLIEEQYQRVKAL 445
Query: 562 LKKHEKQLHALANALLEYETLSAEEIKRIL 591
L + + L +A LLE ETL+AEE +R++
Sbjct: 446 LLEKREVLERVAETLLERETLTAEEFQRVV 475
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 325 bits (832), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 162/257 (63%), Positives = 201/257 (78%), Gaps = 5/257 (1%)
Query: 159 VMPEKNVKT-FKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTL 217
++ E +KT F DV GCD+AK+E+ E+VEYL+ PS+F +LGGK+PKG+L+ G PGTGKTL
Sbjct: 1 MLTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTL 60
Query: 218 LAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTR 277
LAKAIAGEA VPFF +GS+F EMFVGVGA RVR +F+ AKK APCIIFIDEIDAVG R
Sbjct: 61 LAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQR 120
Query: 278 KQWEG----HTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVP 333
G ++TL+Q+LVEMDGFE NEGII++AATN PD+LDPAL RPGRFDR +VV
Sbjct: 121 GAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVG 180
Query: 334 NPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKL 393
PDVRGR++IL+++++ PLA D+D IARGTPGF+GADLANLVN AA+ AA +
Sbjct: 181 LPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVV 240
Query: 394 TATELEFAKDRILMGTE 410
+ E E AKD+I+MG E
Sbjct: 241 SMVEFEKAKDKIMMGLE 257
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 264 bits (675), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 135/255 (52%), Positives = 186/255 (72%), Gaps = 7/255 (2%)
Query: 164 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIA 223
NV+ FKD+ G ++AK+E+VE+V++LK P ++ LG K+PKG+LL G PGTGKTLLAKA+A
Sbjct: 7 NVR-FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVA 65
Query: 224 GEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRK----- 278
GEA VPFF GS F EMFVG+GA RVR LF+ AKK+AP IIFIDEIDA+G +R
Sbjct: 66 GEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVV 125
Query: 279 QWEGHTKKTLHQLLVEMDGF-EQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDV 337
++TL+QLL EMDGF +N +I++AATN P+ILDPAL RPGRFDR ++V PD
Sbjct: 126 SGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDF 185
Query: 338 RGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATE 397
GR EIL+++++ LA+DV+++ +A+ T G GADLAN++N AA+ A + +++
Sbjct: 186 NGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQQH 245
Query: 398 LEFAKDRILMGTERK 412
L+ A +R + G E+K
Sbjct: 246 LKEAVERGIAGLEKK 260
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 261 bits (668), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 146/247 (59%), Positives = 187/247 (75%), Gaps = 4/247 (1%)
Query: 159 VMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLL 218
V+ E TFKDV G ++AK+EL E+VE+LKNPS+F +G ++PKG+LL G PG GKT L
Sbjct: 30 VLTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHL 89
Query: 219 AKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRK 278
A+A+AGEA VPF +GS+F EMFVGVGA RVR LF+ AK+ APCI+FIDEIDAVG R
Sbjct: 90 ARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRG 149
Query: 279 QWEG----HTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPN 334
G ++TL+QLLVEMDGFE++ I++MAATN PDILDPAL RPGRFDR I +
Sbjct: 150 SGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDA 209
Query: 335 PDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLT 394
PDV+GR++IL ++ + KPLA+DVD+ +A+ TPGF GADL NL+N AA+ AA +G K+T
Sbjct: 210 PDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKIT 269
Query: 395 ATELEFA 401
+LE A
Sbjct: 270 MKDLEEA 276
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 261 bits (667), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 146/247 (59%), Positives = 187/247 (75%), Gaps = 4/247 (1%)
Query: 159 VMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLL 218
V+ E TFKDV G ++AK+EL E+VE+LKNPS+F +G ++PKG+LL G PG GKT L
Sbjct: 6 VLTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHL 65
Query: 219 AKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRK 278
A+A+AGEA VPF +GS+F EMFVGVGA RVR LF+ AK+ APCI+FIDEIDAVG R
Sbjct: 66 ARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRG 125
Query: 279 QWEG----HTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPN 334
G ++TL+QLLVEMDGFE++ I++MAATN PDILDPAL RPGRFDR I +
Sbjct: 126 SGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDA 185
Query: 335 PDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLT 394
PDV+GR++IL ++ + KPLA+DVD+ +A+ TPGF GADL NL+N AA+ AA +G K+T
Sbjct: 186 PDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKIT 245
Query: 395 ATELEFA 401
+LE A
Sbjct: 246 MKDLEEA 252
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 242 bits (618), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 127/259 (49%), Positives = 175/259 (67%), Gaps = 7/259 (2%)
Query: 167 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA 226
+FKDV G +AK E+ E V+YLK+P +F +LG K+PKG LL G PG GKTLLAKA+A EA
Sbjct: 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA 63
Query: 227 GVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRK-QWEGHT- 284
VPF AG+EF E+ G+GA RVRSLF+ A+ +APCI++IDEIDAVG R G +
Sbjct: 64 QVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSN 123
Query: 285 ---KKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQ 341
++TL+QLLVEMDG + +I++A+TN DILD AL RPGR DRH+ + P ++ R+
Sbjct: 124 TEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERR 183
Query: 342 EILELYLQDKPLADDVDV--KAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELE 399
EI E +L+ L + +A TPGF+GAD+AN+ N AA+ AA +G + E
Sbjct: 184 EIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNFE 243
Query: 400 FAKDRILMGTERKTMFISE 418
+A +R+L GT +K+ +S+
Sbjct: 244 YAVERVLAGTAKKSKILSK 262
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 200 bits (508), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 115/254 (45%), Positives = 162/254 (63%), Gaps = 6/254 (2%)
Query: 158 EVMPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKT 216
EV NV+ ++D+ G + QE+ EVVE LK+P F ++G + PKGILL G PGTGKT
Sbjct: 7 EVDERPNVR-YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKT 65
Query: 217 LLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGST 276
LLAKA+A E F GSE + F+G GA V+ +F+ AK+KAP IIFIDEIDA+ +
Sbjct: 66 LLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAK 125
Query: 277 RKQ----WEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVV 332
R + ++TL QLL EMDGF+ + ++ ATN PDILDPA+ RPGRFDR I V
Sbjct: 126 RTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEV 185
Query: 333 PNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEK 392
P PD +GR EIL+++ + LA+DV+++ IA+ T G GA+L + A + A + +
Sbjct: 186 PAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDY 245
Query: 393 LTATELEFAKDRIL 406
+T + A ++I+
Sbjct: 246 VTMDDFRKAVEKIM 259
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 185 bits (469), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 100/220 (45%), Positives = 140/220 (63%), Gaps = 2/220 (0%)
Query: 168 FKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA 226
+ DV GC ++ E+VE L++P+ F +G K P+GILL G PGTGKTL+A+A+A E
Sbjct: 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 227 GVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHT-K 285
G FF G E G +R F+ A+K AP IIFIDE+DA+ R++ G +
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVER 322
Query: 286 KTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILE 345
+ + QLL MDG +Q +I+MAATN P+ +DPAL R GRFDR + + PD GR EIL+
Sbjct: 323 RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQ 382
Query: 346 LYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKA 385
++ ++ LADDVD++ +A T G GADLA L + AA++A
Sbjct: 383 IHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQA 422
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 185 bits (469), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 99/220 (45%), Positives = 140/220 (63%), Gaps = 2/220 (0%)
Query: 168 FKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA 226
+ D+ GC ++ E+VE L++P+ F +G K P+GILL G PGTGKTL+A+A+A E
Sbjct: 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 227 GVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHT-K 285
G FF G E G +R F+ A+K AP IIFIDE+DA+ R++ G +
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVER 322
Query: 286 KTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILE 345
+ + QLL MDG +Q +I+MAATN P+ +DPAL R GRFDR + + PD GR EIL+
Sbjct: 323 RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQ 382
Query: 346 LYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKA 385
++ ++ LADDVD++ +A T G GADLA L + AA++A
Sbjct: 383 IHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQA 422
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 185 bits (469), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 99/220 (45%), Positives = 140/220 (63%), Gaps = 2/220 (0%)
Query: 168 FKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA 226
+ D+ GC ++ E+VE L++P+ F +G K P+GILL G PGTGKTL+A+A+A E
Sbjct: 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 227 GVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHT-K 285
G FF G E G +R F+ A+K AP IIFIDE+DA+ R++ G +
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVER 322
Query: 286 KTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILE 345
+ + QLL MDG +Q +I+MAATN P+ +DPAL R GRFDR + + PD GR EIL+
Sbjct: 323 RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQ 382
Query: 346 LYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKA 385
++ ++ LADDVD++ +A T G GADLA L + AA++A
Sbjct: 383 IHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQA 422
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 184 bits (468), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 99/220 (45%), Positives = 140/220 (63%), Gaps = 2/220 (0%)
Query: 168 FKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA 226
+ D+ GC ++ E+VE L++P+ F +G K P+GILL G PGTGKTL+A+A+A E
Sbjct: 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 227 GVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHT-K 285
G FF G E G +R F+ A+K AP IIFIDE+DA+ R++ G +
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVER 322
Query: 286 KTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILE 345
+ + QLL MDG +Q +I+MAATN P+ +DPAL R GRFDR + + PD GR EIL+
Sbjct: 323 RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQ 382
Query: 346 LYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKA 385
++ ++ LADDVD++ +A T G GADLA L + AA++A
Sbjct: 383 IHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQA 422
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 184 bits (468), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 100/220 (45%), Positives = 140/220 (63%), Gaps = 2/220 (0%)
Query: 168 FKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA 226
+ DV GC ++ E+VE L++P+ F +G K P+GILL G PGTGKTL+A+A+A E
Sbjct: 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 227 GVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHT-K 285
G FF G E G +R F+ A+K AP IIFIDE+DA+ R++ G +
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVER 322
Query: 286 KTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILE 345
+ + QLL MDG +Q +I+MAATN P+ +DPAL R GRFDR + + PD GR EIL+
Sbjct: 323 RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQ 382
Query: 346 LYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKA 385
++ ++ LADDVD++ +A T G GADLA L + AA++A
Sbjct: 383 IHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQA 422
Score = 179 bits (454), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 134/221 (60%), Gaps = 5/221 (2%)
Query: 167 TFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGE 225
T++D+ G +D K+EL E+V+Y +++P KF + G KG+L G PG GKTLLAKAIA E
Sbjct: 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534
Query: 226 AGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGH-- 283
F G E M+ G VR +F A++ APC++F DE+D++ R G
Sbjct: 535 CQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGG 594
Query: 284 --TKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQ 341
+ ++Q+L EMDG + + ++ ATN PDI+DPA+ RPGR D+ I +P PD + R
Sbjct: 595 GAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRV 654
Query: 342 EILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAA 382
IL+ L+ P+A DVD++ +A+ T GF+GADL + A
Sbjct: 655 AILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRAC 695
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 184 bits (467), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 99/220 (45%), Positives = 140/220 (63%), Gaps = 2/220 (0%)
Query: 168 FKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA 226
+ D+ GC ++ E+VE L++P+ F +G K P+GILL G PGTGKTL+A+A+A E
Sbjct: 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 227 GVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHT-K 285
G FF G E G +R F+ A+K AP IIFIDE+DA+ R++ G +
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVER 322
Query: 286 KTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILE 345
+ + QLL MDG +Q +I+MAATN P+ +DPAL R GRFDR + + PD GR EIL+
Sbjct: 323 RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQ 382
Query: 346 LYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKA 385
++ ++ LADDVD++ +A T G GADLA L + AA++A
Sbjct: 383 IHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQA 422
Score = 179 bits (454), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 134/221 (60%), Gaps = 5/221 (2%)
Query: 167 TFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGE 225
T++D+ G +D K+EL E+V+Y +++P KF + G KG+L G PG GKTLLAKAIA E
Sbjct: 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534
Query: 226 AGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGH-- 283
F G E M+ G VR +F A++ APC++F DE+D++ R G
Sbjct: 535 CQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGG 594
Query: 284 --TKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQ 341
+ ++Q+L EMDG + + ++ ATN PDI+DPA+ RPGR D+ I +P PD + R
Sbjct: 595 GAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRV 654
Query: 342 EILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAA 382
IL+ L+ P+A DVD++ +A+ T GF+GADL + A
Sbjct: 655 AILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRAC 695
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 180 bits (457), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 140/238 (58%), Gaps = 7/238 (2%)
Query: 167 TFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGE 225
TF + G + +EL EV+E LKNP F R+G K PKG+LL G PGTGKTLLAKA+A
Sbjct: 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT 238
Query: 226 AGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHT- 284
G F + S + ++G AR +R +F AK+ PCIIF+DE+DA+G R+ EG +
Sbjct: 239 IGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGG-RRFSEGTSA 297
Query: 285 ----KKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGR 340
++TL +LL +MDGF+ ++ ATN PD LDPAL RPGR DR + +P P+ GR
Sbjct: 298 DREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGR 357
Query: 341 QEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATEL 398
EI +++ + D +A + + GFNGAD+ N A A D + + +L
Sbjct: 358 LEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDL 415
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 180 bits (456), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 134/221 (60%), Gaps = 5/221 (2%)
Query: 167 TFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGE 225
T++D+ G +D K+EL E+V+Y +++P KF + G KG+L G PG GKTLLAKAIA E
Sbjct: 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 72
Query: 226 AGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGH-- 283
F G E M+ G VR +F A++ APC++F DE+D++ R G
Sbjct: 73 CQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGG 132
Query: 284 --TKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQ 341
+ ++Q+L EMDG + + ++ ATN PDI+DPA+ RPGR D+ I +P PD + R
Sbjct: 133 GAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRV 192
Query: 342 EILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAA 382
IL+ L+ P+A DVD++ +A+ T GF+GADL + A
Sbjct: 193 AILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRAC 233
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 178 bits (451), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 97/232 (41%), Positives = 140/232 (60%), Gaps = 9/232 (3%)
Query: 152 PKELNKEV----MPEKNVKTFKDVKGCDDAKQELVE-VVEYLKNPSKFTRLGGKLPKGIL 206
P E + V + EK +T+ DV G D +ELVE +V +K KF +G + PKG L
Sbjct: 160 PSEFDSRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGAL 219
Query: 207 LTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIF 266
+ G PGTGKTLLA+A A + F A + +M++G GA+ VR F AK+KAP IIF
Sbjct: 220 MYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIF 279
Query: 267 IDEIDAVGSTR----KQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTR 322
IDE+DA+G+ R K + ++T+ +LL ++DGF ++ + ++AATN D+LDPAL R
Sbjct: 280 IDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLR 339
Query: 323 PGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADL 374
GR DR I P P R +IL+++ + DD++ + +AR T FNGA L
Sbjct: 340 SGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQL 391
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 176 bits (445), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 104/257 (40%), Positives = 146/257 (56%), Gaps = 9/257 (3%)
Query: 162 EKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAK 220
EK T+ DV GC D ++L EVVE L +P +F LG PKGILL G PGTGKTL A+
Sbjct: 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCAR 261
Query: 221 AIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTR--- 277
A+A F GSE + +VG GAR VR LF+ A+ K CIIF DEIDAVG R
Sbjct: 262 AVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDD 321
Query: 278 -KQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPD 336
+ ++T+ +L+ ++DGF+ I +M ATN P+ LDPAL RPGR DR + PD
Sbjct: 322 GAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPD 381
Query: 337 VRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTAT 396
+ GR I ++ + + + + I+R P GA+L ++ A + A + AT
Sbjct: 382 LEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIR--ARRKVAT 439
Query: 397 ELEFAK--DRILMGTER 411
E +F K D+++ G ++
Sbjct: 440 EKDFLKAVDKVISGYKK 456
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 175 bits (443), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 96/245 (39%), Positives = 146/245 (59%), Gaps = 5/245 (2%)
Query: 167 TFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGE 225
T+ V G +E+ EV+E +K+P F LG PKG++L G PGTGKTLLA+A+A
Sbjct: 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH 205
Query: 226 AGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG--- 282
F +G+E + ++G G+R VR LF A++ AP IIF+DEID++GSTR + G
Sbjct: 206 TDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGD 265
Query: 283 -HTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQ 341
++T+ +LL ++DGFE ++ I ++ ATN DILDPAL RPGR DR I P P V R
Sbjct: 266 SEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARA 325
Query: 342 EILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFA 401
EIL ++ + L ++++ +A G +GAD+ + A + A + +T + E A
Sbjct: 326 EILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELA 385
Query: 402 KDRIL 406
+++
Sbjct: 386 VGKVM 390
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 175 bits (443), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 98/226 (43%), Positives = 138/226 (61%), Gaps = 7/226 (3%)
Query: 167 TFKDVKGCDDAKQEL-VEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGE 225
T+ D+ +D ++EL + ++ ++NP +F LG P G+LL G PG GKTLLAKA+A E
Sbjct: 8 TWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANE 67
Query: 226 AGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE-GHT 284
+G+ F G E M+VG R VR +FQ AK APC+IF DE+DA+ R E G +
Sbjct: 68 SGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGAS 127
Query: 285 KKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEIL 344
+ ++QLL EMDG E + + +MAATN PDI+DPA+ RPGR D+ + V P R IL
Sbjct: 128 VRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAIL 187
Query: 345 ELYLQD---KPLADDVDVKAIARG--TPGFNGADLANLVNIAAIKA 385
+ ++ PL DV+++AIA + GADL+ LV A+I A
Sbjct: 188 KTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICA 233
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 92/252 (36%), Positives = 151/252 (59%), Gaps = 5/252 (1%)
Query: 160 MPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLL 218
M + +++ D+ G + QE+ E VE L +P + +G K PKG++L GAPGTGKTLL
Sbjct: 173 MDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLL 232
Query: 219 AKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRK 278
AKA+A + F GSE + ++G G R R +F+ A + AP I+FIDEIDA+G+ R
Sbjct: 233 AKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRY 292
Query: 279 Q----WEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPN 334
E ++T+ +LL ++DGF+ + ++ ATN + LDPAL RPGR DR I+ N
Sbjct: 293 DSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFEN 352
Query: 335 PDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLT 394
PD+ +++IL ++ L++DV+++ + +GAD+ + A + A + ++T
Sbjct: 353 PDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVT 412
Query: 395 ATELEFAKDRIL 406
A + + AK+R++
Sbjct: 413 AEDFKQAKERVM 424
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 152 bits (385), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 93/248 (37%), Positives = 139/248 (56%), Gaps = 10/248 (4%)
Query: 162 EKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAK 220
EK T+ DV G D KQE+ E VE L + ++G P+G+LL G PGTGKT+L K
Sbjct: 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVK 224
Query: 221 AIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW 280
A+A F GSEF ++G G R VR +F+ A++ AP IIFIDE+D++ + K++
Sbjct: 225 AVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIAT--KRF 282
Query: 281 EGHT------KKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPN 334
+ T ++ L +LL +MDGF+Q+ + ++ ATN D LDPAL RPGR DR I P+
Sbjct: 283 DAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPS 342
Query: 335 -PDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKL 393
D R R+ I LA + D+ ++ +GA +A ++ A ++A +
Sbjct: 343 LRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVI 402
Query: 394 TATELEFA 401
++LE A
Sbjct: 403 LQSDLEEA 410
>pdb|2DI4|A Chain A, Crystal Structure Of The Ftsh Protease Domain
pdb|2DI4|B Chain B, Crystal Structure Of The Ftsh Protease Domain
Length = 238
Score = 142 bits (358), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 117/194 (60%), Gaps = 13/194 (6%)
Query: 414 MFISEESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPRGSALGMVTQLPSSDETSVSQK 473
M IS + K+ A HE+GHA++ ++ +HK +I+PRG ALG+ QLP D+ +K
Sbjct: 9 MTISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPRGMALGVTQQLPIEDKHIYDKK 68
Query: 474 QLLARLDVCMGGRVAEELIFGRDHITTGASSDLHSATELAHYMVSNCGMSDAIGPVHIKD 533
L ++ V +GGR AEE+ FG+D ITTGA +DL AT+LA+ MVS GMSD +GP+ I+
Sbjct: 69 DLYNKILVLLGGRAAEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKVGPIAIRR 128
Query: 534 -------------RPSSEMQSRIDAEVVKLLREAYDRVKALLKKHEKQLHALANALLEYE 580
S ++ ID EV +++ E Y++ KA+++++++ L A+ LLE E
Sbjct: 129 VANPFLGGMTTAVDTSPDLLREIDEEVKRIITEQYEKAKAIVEEYKEPLKAVVKKLLEKE 188
Query: 581 TLSAEEIKRILLPY 594
T++ EE + Y
Sbjct: 189 TITCEEFVEVFKLY 202
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 136 bits (342), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 89/237 (37%), Positives = 140/237 (59%), Gaps = 13/237 (5%)
Query: 155 LNKEVMPEK-NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRL--GGKLP-KGILLTGA 210
L+ ++ EK NVK ++DV G + AK+ L E V P KF L G + P GILL G
Sbjct: 37 LSSAILSEKPNVK-WEDVAGLEGAKEALKEAVIL---PVKFPHLFKGNRKPTSGILLYGP 92
Query: 211 PGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEI 270
PGTGK+ LAKA+A EA FF + S+ ++G + V+ LF A++ P IIFID++
Sbjct: 93 PGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQV 152
Query: 271 DAVGSTRKQWEGHTKKTLH-QLLVEMDGF-EQNEGIILMAATNLPDILDPALTRPGRFDR 328
DA+ TR + E + + +LLV+M+G ++G++++ ATN+P LD A+ R RF+R
Sbjct: 153 DALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFER 210
Query: 329 HIVVPNPDVRGRQEILELYLQDKP-LADDVDVKAIARGTPGFNGADLANLVNIAAIK 384
I +P PD+ R + E+ + D P + D + + T G++G+D+A +V A ++
Sbjct: 211 RIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQ 267
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 135 bits (341), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 87/227 (38%), Positives = 133/227 (58%), Gaps = 12/227 (5%)
Query: 164 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRL--GGKLP-KGILLTGAPGTGKTLLAK 220
NVK ++DV G + AK+ L E V P KF L G + P GILL G PGTGK+ LAK
Sbjct: 23 NVK-WEDVAGLEGAKEALKEAVIL---PVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAK 78
Query: 221 AIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW 280
A+A EA FF + S+ ++G + V+ LF A++ P IIFIDE+DA+ TR +
Sbjct: 79 AVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGEG 138
Query: 281 EGHTKKTLH-QLLVEMDGF-EQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVR 338
E + + +LLV+M+G ++G++++ ATN+P LD A+ R RF+R I +P PD+
Sbjct: 139 ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLA 196
Query: 339 GRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIK 384
R + E+ + D P D + + T G++G+D+A +V A ++
Sbjct: 197 ARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQ 243
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 135 bits (341), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 89/237 (37%), Positives = 139/237 (58%), Gaps = 13/237 (5%)
Query: 155 LNKEVMPEK-NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRL--GGKLP-KGILLTGA 210
L+ ++ EK NVK ++DV G + AK+ L E V P KF L G + P GILL G
Sbjct: 22 LSSAILSEKPNVK-WEDVAGLEGAKEALKEAVIL---PVKFPHLFKGNRKPTSGILLYGP 77
Query: 211 PGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEI 270
PGTGK+ LAKA+A EA FF + S+ ++G + V+ LF A++ P IIFID++
Sbjct: 78 PGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQV 137
Query: 271 DAVGSTRKQWEGHTKKTLH-QLLVEMDGF-EQNEGIILMAATNLPDILDPALTRPGRFDR 328
DA+ TR + E + + +LLV+M+G ++G++++ ATN+P LD A+ R RF+R
Sbjct: 138 DALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFER 195
Query: 329 HIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIK 384
I +P PD+ R + E+ + D P D + + T G++G+D+A +V A ++
Sbjct: 196 RIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQ 252
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 135 bits (339), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 88/233 (37%), Positives = 137/233 (58%), Gaps = 13/233 (5%)
Query: 159 VMPEK-NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRL--GGKLP-KGILLTGAPGTG 214
++ EK NVK ++DV G + AK+ L E V P KF L G + P GILL G PGTG
Sbjct: 8 ILSEKPNVK-WEDVAGLEGAKEALKEAVIL---PVKFPHLFKGNRKPTSGILLYGPPGTG 63
Query: 215 KTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVG 274
K+ LAKA+A EA FF + S+ ++G + V+ LF A++ P IIFID++DA+
Sbjct: 64 KSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALT 123
Query: 275 STRKQWEGHTKKTLH-QLLVEMDGF-EQNEGIILMAATNLPDILDPALTRPGRFDRHIVV 332
TR + E + + +LLV+M+G ++G++++ ATN+P LD A+ R RF+R I +
Sbjct: 124 GTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYI 181
Query: 333 PNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIK 384
P PD+ R + E+ + D P D + + T G++G+D+A +V A ++
Sbjct: 182 PLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQ 234
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 132 bits (332), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 87/232 (37%), Positives = 138/232 (59%), Gaps = 11/232 (4%)
Query: 159 VMPEKNVKTFKDVKGCDDAKQELVE-VVEYLKNPSKFTRLGGKLP-KGILLTGAPGTGKT 216
V+ NVK + DV G + AK+ L E V+ +K P FT G + P +GILL G PGTGK+
Sbjct: 125 VIERPNVK-WSDVAGLEGAKEALKEAVILPIKFPHLFT--GKRTPWRGILLFGPPGTGKS 181
Query: 217 LLAKAIAGEAG-VPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGS 275
LAKA+A EA FF + S+ ++G + V++LFQ A++ P IIFIDEID++
Sbjct: 182 YLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCG 241
Query: 276 TRKQWEGHTKKTLH-QLLVEMDGFE-QNEGIILMAATNLPDILDPALTRPGRFDRHIVVP 333
+R + E + + + LV+M G N+GI+++ ATN+P +LD A+ R RF++ I +P
Sbjct: 242 SRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIP 299
Query: 334 NPDVRGRQEILELYL-QDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIK 384
P+ R + L+L + + D + + R T G++GAD++ +V A ++
Sbjct: 300 LPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQ 351
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 132 bits (331), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 87/232 (37%), Positives = 139/232 (59%), Gaps = 11/232 (4%)
Query: 159 VMPEKNVKTFKDVKGCDDAKQELVE-VVEYLKNPSKFTRLGGKLP-KGILLTGAPGTGKT 216
V+ NVK + DV G + AK+ L E V+ +K P FT G + P +GILL G PGTGK+
Sbjct: 3 VIERPNVK-WSDVAGLEGAKEALKEAVILPIKFPHLFT--GKRTPWRGILLFGPPGTGKS 59
Query: 217 LLAKAIAGEAG-VPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGS 275
LAKA+A EA FF + S+ ++G + V++LFQ A++ P IIFIDEID++
Sbjct: 60 YLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCG 119
Query: 276 TRKQWEGHTKKTLH-QLLVEMDGFE-QNEGIILMAATNLPDILDPALTRPGRFDRHIVVP 333
+R + E + + + LV+M G N+GI+++ ATN+P +LD A+ R RF++ I +P
Sbjct: 120 SRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIP 177
Query: 334 NPDVRGRQEILELYL-QDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIK 384
P+ R + +L+L + + D + + R T G++GAD++ +V A ++
Sbjct: 178 LPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQ 229
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 130/232 (56%), Gaps = 8/232 (3%)
Query: 157 KEVMPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGK 215
E+M ++D+ G + AK + E+V + + P FT L G PKGILL G PGTGK
Sbjct: 72 NEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGP-PKGILLFGPPGTGK 130
Query: 216 TLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGS 275
TL+ K IA ++G FF + S +VG G + VR+LF A+ + P +IFIDEID++ S
Sbjct: 131 TLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLS 190
Query: 276 TRKQWEGHTKKTLH-QLLVEMDG--FEQNEGIILMAATNLPDILDPALTRPGRFDRHIVV 332
R E + + + + LV++DG + I+++ ATN P +D A R R + + +
Sbjct: 191 QRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYI 248
Query: 333 PNPDVRGRQEI-LELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAI 383
P P+ R++I + L +++ + +++ I + + F+GAD+ L A++
Sbjct: 249 PLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASL 300
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 122 bits (306), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 84/233 (36%), Positives = 127/233 (54%), Gaps = 12/233 (5%)
Query: 158 EVMPEKNVKTFKDVKGCDDAKQELVEVVEYLK-NPSKFTRLGGKLP-KGILLTGAPGTGK 215
E++ F D+ G D AKQ L E+V P FT G + P +G+LL G PG GK
Sbjct: 104 EIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFT--GLRAPARGLLLFGPPGNGK 161
Query: 216 TLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGS 275
T+LAKA+A E+ FF + + +VG G + VR+LF A++ P IIFID++D++
Sbjct: 162 TMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLC 221
Query: 276 TRKQWEGHTKKTLH-QLLVEMDGFEQ--NEGIILMAATNLPDILDPALTRPGRFDRHIVV 332
R++ E + L + L+E DG + ++ +++M ATN P LD A+ R RF + + V
Sbjct: 222 ERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYV 279
Query: 333 --PNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAI 383
PN + R L Q PL ++ +AR T G++G+DL L AA+
Sbjct: 280 SLPNEETRLLLLKNLLCKQGSPLTQK-ELAQLARMTDGYSGSDLTALAKDAAL 331
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/225 (39%), Positives = 125/225 (55%), Gaps = 13/225 (5%)
Query: 168 FKDVKGCDDAKQELVEVVEYLK-NPSKFTRLGGKLP-KGILLTGAPGTGKTLLAKAIAGE 225
+ D+ G D AKQ L E+V P FT G + P KG+LL G PG GKTLLA+A+A E
Sbjct: 20 WTDIAGQDVAKQALQEMVILPSVRPELFT--GLRAPAKGLLLFGPPGNGKTLLARAVATE 77
Query: 226 AGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTK 285
F + + +VG G + VR+LF A+ P IIFIDE+D++ S R E
Sbjct: 78 CSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEAS 137
Query: 286 KTLH-QLLVEMDGFEQN---EGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQ 341
+ L + LVE DG N + I+++AATN P LD A R RF + + V PD + R+
Sbjct: 138 RRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRE 195
Query: 342 EILELYLQDK--PLADDVDVKAIARGTPGFNGADLANLVNIAAIK 384
+L LQ + PL D ++ +A+ T G++G+DL L AA++
Sbjct: 196 LLLNRLLQKQGSPL-DTEALRRLAKITDGYSGSDLTALAKDAALE 239
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 69/175 (39%), Gaps = 40/175 (22%)
Query: 150 YAPKELNKEVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTG 209
Y P +++ ++P + +TFK + GK+P IL +
Sbjct: 20 YRPSTIDECILPAFDKETFKSITS------------------------KGKIPHIILHSP 55
Query: 210 APGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSL--FQAAKKKAPCIIFI 267
+PGTGKT +AKA+ + + GS+ + FV S F +K +I I
Sbjct: 56 SPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFVRGPLTNFASAASFDGRQK----VIVI 111
Query: 268 DEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTR 322
DE D G Q L M+ + N II+ A N+ I+ P +R
Sbjct: 112 DEFDRSGLAESQ---------RHLRSFMEAYSSNCSIII-TANNIDGIIKPLQSR 156
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 11/81 (13%)
Query: 202 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKA 261
PK IL+ G G GKT +A+ +A A PF ++F E VG + V S+ + A
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE--VGYVGKEVDSIIRDLTDSA 107
Query: 262 ---------PCIIFIDEIDAV 273
I+FIDEID +
Sbjct: 108 GGAIDAVEQNGIVFIDEIDKI 128
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 9/68 (13%)
Query: 173 GCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG--VPF 230
G ++A++ +VE +K+ R +LL G PGTGKT LA AIA E G VPF
Sbjct: 55 GQENAREACGVIVELIKSKKXAGR-------AVLLAGPPGTGKTALALAIAQELGSKVPF 107
Query: 231 FYRAGSEF 238
GSE
Sbjct: 108 CPXVGSEV 115
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 9/67 (13%)
Query: 173 GCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG--VPF 230
G ++A++ +VE +K+ ++ G+ +LL G PGTGKT LA AIA E G VPF
Sbjct: 41 GQENAREACGVIVELIKSK----KMAGR---AVLLAGPPGTGKTALALAIAQELGSKVPF 93
Query: 231 FYRAGSE 237
GSE
Sbjct: 94 CPMVGSE 100
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 204 GILLTGAPGTGKTLLAKAIAGEAGVPF-FYRAGSEFEEMFVGVGARRVRS-LFQAA---- 257
ILL G G+GKTL+A+ +A +P A S E +VG + + L QA+
Sbjct: 74 NILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNV 133
Query: 258 KKKAPCIIFIDEIDAVG 274
+K I+FIDEID +
Sbjct: 134 QKAQKGIVFIDEIDKIS 150
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 11/104 (10%)
Query: 158 EVMPEKNVKTF-KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKL-----PKGILLTGAP 211
E+ P + V K + G D+AK+ V L+N + +L +L PK IL+ G
Sbjct: 3 EMTPREIVSELDKHIIGQDNAKRS---VAIALRNRWRRMQLNEELRHEVTPKNILMIGPT 59
Query: 212 GTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQ 255
G GKT +A+ +A A PF ++F E VG + V S+ +
Sbjct: 60 GVGKTEIARRLAKLANAPFIKVEATKFTE--VGYVGKEVDSIIR 101
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 11/104 (10%)
Query: 158 EVMPEKNVKTF-KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKL-----PKGILLTGAP 211
E+ P + V K + G D+AK+ V L+N + +L +L PK IL+ G
Sbjct: 2 EMTPREIVSELDKHIIGQDNAKRS---VAIALRNRWRRMQLNEELRHEVTPKNILMIGPT 58
Query: 212 GTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQ 255
G GKT +A+ +A A PF ++F E VG + V S+ +
Sbjct: 59 GVGKTEIARRLAKLANAPFIKVEATKFTE--VGYVGKEVDSIIR 100
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 11/104 (10%)
Query: 158 EVMPEKNVKTF-KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKL-----PKGILLTGAP 211
E+ P + V K + G D+AK+ V L+N + +L +L PK IL+ G
Sbjct: 9 EMTPREIVSELDKHIIGQDNAKRS---VAIALRNRWRRMQLNEELRHEVTPKNILMIGPT 65
Query: 212 GTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQ 255
G GKT +A+ +A A PF ++F E VG + V S+ +
Sbjct: 66 GVGKTEIARRLAKLANAPFIKVEATKFTE--VGYVGKEVDSIIR 107
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 202 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKA 261
PK IL+ G G GKT +A+ +A A PF ++F E VG + V S+ + A
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE--VGYVGKEVDSIIRDLTDSA 107
Query: 262 PCIIFIDEI 270
++ EI
Sbjct: 108 MKLVRQQEI 116
>pdb|3LBY|A Chain A, Crystal Structure Of Smu.1697c, A Putative
Methyltransferase From Streptococcus Mutans In Complex
With Sah
pdb|3LBY|B Chain B, Crystal Structure Of Smu.1697c, A Putative
Methyltransferase From Streptococcus Mutans In Complex
With Sah
Length = 181
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 24/112 (21%)
Query: 407 MGTERKTMFISEESKKLTAYHESGHAI--------------VAFNTEGAHPIHKATIMPR 452
MG T+F+S +KK+ A+ A+ V +G I+K P
Sbjct: 28 MGNGNDTVFLSHLAKKVYAFDVQEQALIKTREKLEQLNIKNVQLILDGHQTINKYVTEPI 87
Query: 453 GSALGMVTQLPSSDETSVSQ--------KQLLARLDVCMGGRVAEELIFGRD 496
+A+ + LPS+D++ ++Q K++L RL++ GGR+A + +G +
Sbjct: 88 RAAIFNLGYLPSADKSVITQPATTLTAIKKILERLEI--GGRLAIMVYYGHE 137
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 205 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM-FVGVGARR-VRSLFQAA----K 258
ILL G G+GKTLLA+ +A VPF + E +VG ++ L Q +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 259 KKAPCIIFIDEIDAV 273
K I++ID+ID +
Sbjct: 114 KAQRGIVYIDQIDKI 128
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 205 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM-FVGVGARR-VRSLFQAA----K 258
ILL G G+GKTLLA+ +A VPF + E +VG ++ L Q +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 259 KKAPCIIFIDEIDAV 273
K I++ID+ID +
Sbjct: 114 KAQRGIVYIDQIDKI 128
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
Query: 202 PKGI--LLTGAPGTGKTLLAKAIAGE 225
PKGI L+TG PGTGKT +A+ IA E
Sbjct: 8 PKGINILITGTPGTGKTSMAEMIAAE 33
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 44/101 (43%), Gaps = 13/101 (12%)
Query: 184 VVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFF------YRAGSE 237
++EYL L G + + L G PG GKT LAK+IA G F R SE
Sbjct: 93 ILEYLAVQKLTKSLKGPI---LCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESE 149
Query: 238 F---EEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGS 275
+VG R+ + A K P + +DEID + S
Sbjct: 150 IRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSS 189
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 202 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKA 261
PK IL G G GKT +A+ +A A PF ++F E VG + V S+ + A
Sbjct: 50 PKNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE--VGYVGKEVDSIIRDLTDSA 107
Query: 262 PCIIFIDEI 270
++ EI
Sbjct: 108 XKLVRQQEI 116
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 205 ILLTGAPGTGKTLLAKAIAGEAGVPF 230
ILLTG PG GKT L K +A ++G+ +
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKY 32
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0 Angstroms
Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 205 ILLTGAPGTGKTLLAKAIAGEAGVPF 230
ILLTG PG GKT L K +A ++G+ +
Sbjct: 14 ILLTGTPGVGKTTLGKELASKSGLKY 39
>pdb|3T15|A Chain A, Structure Of Green-Type Rubisco Activase From Tobacco
pdb|3ZW6|A Chain A, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|B Chain B, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|C Chain C, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|D Chain D, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|E Chain E, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|F Chain F, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco
Length = 293
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Query: 184 VVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFV 243
VV KN K + K+P + + G G GK+ + + + G+ + E E
Sbjct: 20 VVHITKNFLKLPNI--KVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNA 77
Query: 244 GVGARRVRSLFQAA----KKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVE 294
G A+ +R ++ A +K C +FI+++DA G+ R G T+ T++ +V
Sbjct: 78 GEPAKLIRQRYREAAEIIRKGNMCCLFINDLDA-GAGRMG--GTTQYTVNNQMVN 129
>pdb|1ZP6|A Chain A, Crystal Structure Of Atu3015, A Putative Cytidylate Kinase
From Agrobacterium Tumefaciens, Northeast Structural
Genomics Target Atr62
Length = 191
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 24/33 (72%), Gaps = 3/33 (9%)
Query: 197 LGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP 229
LGG + +LL+G PG+GK+ +A+A+A GVP
Sbjct: 7 LGGNI---LLLSGHPGSGKSTIAEALANLPGVP 36
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 199 GKLP-KGILLTGAPGTGKTLLAKAIAGEAG--VPFFYRAGSEF 238
GK+ + +L+ G PGTGKT +A +A G PF AGSE
Sbjct: 66 GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEI 108
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 62/148 (41%), Gaps = 37/148 (25%)
Query: 156 NKEVMPEK-NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTG 214
N E+ EK +T +V G D+ Q L VE P +L +G PGTG
Sbjct: 3 NFEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPH------------LLFSGPPGTG 50
Query: 215 KTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARR------VRSLFQAAKKKAPC----- 263
KT A A+A + F G + + F+ + A VR + + AP
Sbjct: 51 KTATAIALARD----LF---GENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPF 103
Query: 264 -IIFIDEIDAV-----GSTRKQWEGHTK 285
IIF+DE DA+ + R+ E ++K
Sbjct: 104 KIIFLDEADALTADAQAALRRTMEMYSK 131
>pdb|4ASH|A Chain A, Crystal Structure Of The Ns6 Protease From Murine
Norovirus 1
pdb|4ASH|B Chain B, Crystal Structure Of The Ns6 Protease From Murine
Norovirus 1
Length = 185
Score = 32.7 bits (73), Expect = 0.63, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPC 263
G+LLTG+ + L I G+AG P+ Y+ G+ + + V V A R + AA P
Sbjct: 121 GMLLTGSNAKAQDL--GTIPGDAGCPYVYKKGNTWVVIGVHVAATRSGNTVIAATHGEPT 178
Query: 264 I 264
+
Sbjct: 179 L 179
>pdb|2RHM|A Chain A, Crystal Structure Of A Putative Kinase (Caur_3907) From
Chloroflexus Aurantiacus J-10-Fl At 1.70 A Resolution
pdb|2RHM|B Chain B, Crystal Structure Of A Putative Kinase (Caur_3907) From
Chloroflexus Aurantiacus J-10-Fl At 1.70 A Resolution
pdb|2RHM|C Chain C, Crystal Structure Of A Putative Kinase (Caur_3907) From
Chloroflexus Aurantiacus J-10-Fl At 1.70 A Resolution
pdb|2RHM|D Chain D, Crystal Structure Of A Putative Kinase (Caur_3907) From
Chloroflexus Aurantiacus J-10-Fl At 1.70 A Resolution
Length = 193
Score = 32.3 bits (72), Expect = 0.77, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 198 GGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM-FVGVG 246
G + P I++TG P TGKT L++A+A +P + F+E+ F G+G
Sbjct: 1 GXQTPALIIVTGHPATGKTTLSQALATGLRLPLLSK--DAFKEVXFDGLG 48
>pdb|3VAA|A Chain A, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
pdb|3VAA|B Chain B, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
pdb|3VAA|C Chain C, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
Length = 199
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 205 ILLTGAPGTGKTLLAKAIAGEAGVPF 230
I LTG G GKT L KA A + VPF
Sbjct: 28 IFLTGYMGAGKTTLGKAFARKLNVPF 53
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 205 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE----FEEMFVGVGARRVRSLFQAAKKK 260
+LL G P +GKT LA IA E+ PF + F E + ++ +F A K
Sbjct: 66 VLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSET---AKCQAMKKIFDDAYKS 122
Query: 261 APCIIFIDEID 271
+ +D+I+
Sbjct: 123 QLSCVVVDDIE 133
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 205 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE----FEEMFVGVGARRVRSLFQAAKKK 260
+LL G P +GKT LA IA E+ PF + F E + ++ +F A K
Sbjct: 67 VLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSET---AKCQAMKKIFDDAYKS 123
Query: 261 APCIIFIDEID 271
+ +D+I+
Sbjct: 124 QLSCVVVDDIE 134
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 62/148 (41%), Gaps = 37/148 (25%)
Query: 156 NKEVMPEK-NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTG 214
N E+ EK +T +V G D+ Q L VE P +L +G PGTG
Sbjct: 3 NFEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPH------------LLFSGPPGTG 50
Query: 215 KTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARR------VRSLFQAAKKKAPC----- 263
KT A A+A + F G + + F+ + A VR + + AP
Sbjct: 51 KTATAIALARD----LF---GENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPF 103
Query: 264 -IIFIDEIDAV-----GSTRKQWEGHTK 285
IIF+DE DA+ + R+ E ++K
Sbjct: 104 KIIFLDEADALTADAQAALRRTMEMYSK 131
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 23/133 (17%)
Query: 166 KTFKDVKGCDDAKQEL---VEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAI 222
KT + G + KQ+L +E + K P + +LL G PG GKT LA I
Sbjct: 9 KTLDEYIGQERLKQKLRVYLEAAKARKEPLEH----------LLLFGPPGLGKTTLAHVI 58
Query: 223 AGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG 282
A E GV +G E+ + A SL + I+FIDEI + +Q E
Sbjct: 59 AHELGVNLRVTSGPAIEKPG-DLAAILANSLEEG------DILFIDEIHRLS---RQAEE 108
Query: 283 HTKKTLHQLLVEM 295
H + ++++
Sbjct: 109 HLYPAMEDFVMDI 121
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 23/133 (17%)
Query: 166 KTFKDVKGCDDAKQEL---VEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAI 222
KT + G + KQ+L +E + K P + +LL G PG GKT LA I
Sbjct: 9 KTLDEYIGQERLKQKLRVYLEAAKARKEPLEH----------LLLFGPPGLGKTTLAHVI 58
Query: 223 AGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG 282
A E GV +G E+ + A SL + I+FIDEI + +Q E
Sbjct: 59 AHELGVNLRVTSGPAIEKPG-DLAAILANSLEEG------DILFIDEIHRLS---RQAEE 108
Query: 283 HTKKTLHQLLVEM 295
H + ++++
Sbjct: 109 HLYPAMEDFVMDI 121
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 23/133 (17%)
Query: 166 KTFKDVKGCDDAKQEL---VEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAI 222
KT + G + KQ+L +E + K P + +LL G PG GKT LA I
Sbjct: 9 KTLDEYIGQERLKQKLRVYLEAAKARKEPLEH----------LLLFGPPGLGKTTLAHVI 58
Query: 223 AGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG 282
A E GV +G E+ + A SL + I+FIDEI + +Q E
Sbjct: 59 AHELGVNLRVTSGPAIEKPG-DLAAILANSLEEG------DILFIDEIHRLS---RQAEE 108
Query: 283 HTKKTLHQLLVEM 295
H + ++++
Sbjct: 109 HLYPAMEDFVMDI 121
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 203 KGILLTGAPGTGKTLLAKAIAGEAG--VPFFYRAGSEF 238
+ +L+ G PGTGKT +A A G PF AGSE
Sbjct: 86 RAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEI 123
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 21/86 (24%)
Query: 198 GGKLPKGI--------LLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM-FVGVGAR 248
G LP+ I +L G PGTGKT LA+ IA A ++ E + V G +
Sbjct: 38 GKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIA--------RYANADVERISAVTSGVK 89
Query: 249 RVRSLFQAAKKKAPC----IIFIDEI 270
+R + A++ I+F+DE+
Sbjct: 90 EIREAIERARQNRNAGRRTILFVDEV 115
>pdb|1VDK|A Chain A, Crystal Structure Of Fumarase From Thermus Thermophilus
Hb8
pdb|1VDK|B Chain B, Crystal Structure Of Fumarase From Thermus Thermophilus
Hb8
Length = 466
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 555 YDRVKALLKKHEKQLHALANALLEYETLSAEEIKRILLPYR 595
YD+ ++KK K+ L A LE L+ EE RI++P R
Sbjct: 418 YDKAAEIVKKALKEKKTLKQAALELGYLTEEEFDRIVVPMR 458
>pdb|4GGM|X Chain X, Structure Of Lpxi
Length = 283
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 435 AFNTEGAHPIHKATIMPRGSALGMVTQLP---SSDETSVSQKQLLARLDVCMGGRVAEEL 491
F EGAH + +PRG LG V+ P + + ++ + + RLD+ G V E L
Sbjct: 122 GFEIEGAHEVXGEXTLPRGR-LGKVSPAPEHXADIDKALDVAREIGRLDIGQGAVVCEGL 180
Query: 492 IF 493
+
Sbjct: 181 VL 182
>pdb|4GGI|A Chain A, Structure Of Lpxi D225a Mutant
Length = 283
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 435 AFNTEGAHPIHKATIMPRGSALGMVTQLP---SSDETSVSQKQLLARLDVCMGGRVAEEL 491
F EGAH + +PRG LG V+ P + + ++ + + RLD+ G V E L
Sbjct: 122 GFEIEGAHEVMGEMTLPRGR-LGKVSPAPEHMADIDKALDVAREIGRLDIGQGAVVCEGL 180
Query: 492 IF 493
+
Sbjct: 181 VL 182
>pdb|2W58|A Chain A, Crystal Structure Of The Dnai
pdb|2W58|B Chain B, Crystal Structure Of The Dnai
Length = 202
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 199 GKLPKGILLTGAPGTGKTLLAKAIAGE 225
GK KG+ L G+ G GKT L AIA E
Sbjct: 51 GKKMKGLYLHGSFGVGKTYLLAAIANE 77
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 25/106 (23%)
Query: 199 GKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSL----- 253
GKLP +L G PGTGKT A+A E G + M + + A R +
Sbjct: 44 GKLPH-LLFYGPPGTGKTSTIVALAREI-------YGKNYSNMVLELNASDDRGIDVVRN 95
Query: 254 ----FQAAKK---KAPCIIFIDEIDAV-----GSTRKQWEGHTKKT 287
F + ++ K +I +DE DA+ + R+ E +TK T
Sbjct: 96 QIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNT 141
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 17/102 (16%)
Query: 198 GGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAA 257
G + + +L G PG GKT A +A E G + S+ R ++L A
Sbjct: 73 GSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDV----------RSKTLLNAG 122
Query: 258 KKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLV--EMDG 297
K A +D + VG + E H +++ E+DG
Sbjct: 123 VKNA-----LDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDG 159
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 166 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGE 225
K+ + G ++ K++L +E K + G++ +LL G PG GKT LA IA E
Sbjct: 22 KSLDEFIGQENVKKKLSLALEAAK-------MRGEVLDHVLLAGPPGLGKTTLAHIIASE 74
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 166 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGE 225
K+ + G ++ K++L +E K + G++ +LL G PG GKT LA IA E
Sbjct: 22 KSLDEFIGQENVKKKLSLALEAAK-------MRGEVLDHVLLAGPPGLGKTTLAHIIASE 74
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 166 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGE 225
K+ + G ++ K++L +E K + G++ +LL G PG GKT LA IA E
Sbjct: 22 KSLDEFIGQENVKKKLSLALEAAK-------MRGEVLDHVLLAGPPGLGKTTLAHIIASE 74
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 166 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGE 225
K+ + G ++ K++L +E K + G++ +LL G PG GKT LA IA E
Sbjct: 22 KSLDEFIGQENVKKKLSLALEAAK-------MRGEVLDHVLLAGPPGLGKTTLAHIIASE 74
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 166 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGE 225
K+ + G ++ K++L +E K + G++ +LL G PG GKT LA IA E
Sbjct: 22 KSLDEFIGQENVKKKLSLALEAAK-------MRGEVLDHVLLAGPPGLGKTTLAHIIASE 74
>pdb|4A3V|B Chain B, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
pdb|4A3V|D Chain D, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
Length = 95
Score = 29.3 bits (64), Expect = 5.9, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 335 PDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLT 394
PD+ GR I ++ + + + + I+R P GA+L ++ A + A +
Sbjct: 8 PDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAI--RARRKV 65
Query: 395 ATELEFAK--DRILMGTER 411
ATE +F K D+++ G ++
Sbjct: 66 ATEKDFLKAVDKVISGYKK 84
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 205 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFV 243
+LL GAPG GK+ LA+ G P AG ++ V
Sbjct: 10 VLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIV 48
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 205 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFV 243
+LL GAPG GK+ LA+ G P AG ++ V
Sbjct: 10 VLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIV 48
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 205 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFV 243
+LL GAPG GK+ LA+ G P AG ++ V
Sbjct: 5 VLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIV 43
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 205 ILLTGAPGTGKTLLAKAIA 223
+LL G PGTGK++L +A+A
Sbjct: 63 VLLIGEPGTGKSMLGQAMA 81
>pdb|3VTF|A Chain A, Structure Of A Udp-Glucose Dehydrogenase From The
Hyperthermophilic Archaeon Pyrobaculum Islandicum
Length = 444
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 14/58 (24%)
Query: 211 PGTGKTLLAKAIAGEAGV--------PFFYRAGSEFEEMF------VGVGARRVRSLF 254
PGT + L+A+A+A EAG P F R GS E+ F +G G R S
Sbjct: 148 PGTTEGLVARAVAEEAGGVKFSVASNPEFLREGSALEDFFKPDRIVIGAGDERAASFL 205
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 166 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGE 225
K+ + G ++ K++L +E K + G++ +LL G PG G+T LA IA E
Sbjct: 22 KSLDEFIGQENVKKKLSLALEAAK-------MRGEVLDHVLLAGPPGLGRTTLAHIIASE 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,540,223
Number of Sequences: 62578
Number of extensions: 685272
Number of successful extensions: 2361
Number of sequences better than 100.0: 97
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 2207
Number of HSP's gapped (non-prelim): 105
length of query: 613
length of database: 14,973,337
effective HSP length: 105
effective length of query: 508
effective length of database: 8,402,647
effective search space: 4268544676
effective search space used: 4268544676
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)