Query 007190
Match_columns 613
No_of_seqs 646 out of 3790
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 20:10:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007190.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007190hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0734 AAA+-type ATPase conta 100.0 6E-125 1E-129 993.0 47.8 511 82-603 227-744 (752)
2 COG0465 HflB ATP-dependent Zn 100.0 7E-104 2E-108 868.3 43.1 481 103-595 95-592 (596)
3 KOG0731 AAA+-type ATPase conta 100.0 6.7E-98 1E-102 832.3 43.5 436 161-599 303-754 (774)
4 CHL00176 ftsH cell division pr 100.0 2.4E-89 5.3E-94 772.8 51.7 434 161-596 175-628 (638)
5 PRK10733 hflB ATP-dependent me 100.0 5.9E-87 1.3E-91 760.2 51.0 435 160-594 143-596 (644)
6 TIGR01241 FtsH_fam ATP-depende 100.0 5.9E-84 1.3E-88 718.4 52.0 432 159-592 45-495 (495)
7 COG1222 RPT1 ATP-dependent 26S 100.0 7.6E-59 1.6E-63 475.6 24.2 251 160-410 142-397 (406)
8 CHL00206 ycf2 Ycf2; Provisiona 100.0 1.9E-56 4.1E-61 527.4 29.6 308 194-525 1622-1984(2281)
9 KOG0730 AAA+-type ATPase [Post 100.0 1.7E-51 3.7E-56 447.9 23.4 248 159-406 424-675 (693)
10 KOG0733 Nuclear AAA ATPase (VC 100.0 8.3E-49 1.8E-53 421.0 24.6 248 161-408 503-772 (802)
11 KOG0727 26S proteasome regulat 100.0 4.2E-46 9.2E-51 364.8 21.1 280 121-407 114-398 (408)
12 KOG0733 Nuclear AAA ATPase (VC 100.0 1E-45 2.2E-50 397.2 21.3 225 164-388 185-414 (802)
13 COG1223 Predicted ATPase (AAA+ 100.0 2E-45 4.3E-50 361.7 20.3 238 163-405 115-355 (368)
14 KOG0652 26S proteasome regulat 100.0 1.7E-45 3.6E-50 362.0 18.7 249 159-407 161-414 (424)
15 KOG0729 26S proteasome regulat 100.0 1.6E-45 3.4E-50 363.2 17.9 253 159-411 167-424 (435)
16 PF01434 Peptidase_M41: Peptid 100.0 3.2E-45 6.9E-50 364.6 20.3 197 394-590 1-213 (213)
17 KOG0728 26S proteasome regulat 100.0 4E-45 8.8E-50 357.6 19.5 248 162-409 140-392 (404)
18 KOG0726 26S proteasome regulat 100.0 7.2E-45 1.6E-49 362.2 14.5 248 162-409 178-430 (440)
19 KOG0738 AAA+-type ATPase [Post 100.0 4.5E-44 9.8E-49 368.7 19.4 247 158-407 201-471 (491)
20 KOG0736 Peroxisome assembly fa 100.0 1.6E-43 3.5E-48 388.4 23.2 247 160-407 663-934 (953)
21 PTZ00454 26S protease regulato 100.0 3E-42 6.4E-47 371.9 26.6 249 161-409 137-390 (398)
22 PRK03992 proteasome-activating 100.0 8.6E-41 1.9E-45 361.2 26.3 252 161-412 123-379 (389)
23 PTZ00361 26 proteosome regulat 100.0 1.4E-40 3.1E-45 361.2 23.1 248 161-408 175-427 (438)
24 KOG0739 AAA+-type ATPase [Post 100.0 1.9E-41 4.2E-46 338.7 12.7 231 155-388 119-353 (439)
25 COG0464 SpoVK ATPases of the A 100.0 4.4E-40 9.6E-45 366.8 24.8 247 159-405 232-483 (494)
26 KOG0735 AAA+-type ATPase [Post 100.0 5E-40 1.1E-44 357.9 22.6 224 165-388 663-888 (952)
27 KOG0737 AAA+-type ATPase [Post 100.0 7.3E-40 1.6E-44 337.9 19.3 230 157-388 80-314 (386)
28 TIGR01243 CDC48 AAA family ATP 100.0 2.5E-39 5.3E-44 376.0 25.7 246 162-407 446-712 (733)
29 CHL00195 ycf46 Ycf46; Provisio 100.0 1.9E-38 4E-43 349.4 24.9 239 164-407 223-465 (489)
30 TIGR01242 26Sp45 26S proteasom 100.0 7.8E-38 1.7E-42 335.9 26.0 245 161-405 114-363 (364)
31 KOG0651 26S proteasome regulat 100.0 1.1E-38 2.3E-43 321.2 12.6 242 164-405 127-373 (388)
32 TIGR03689 pup_AAA proteasome A 100.0 4.1E-36 8.8E-41 330.6 24.7 266 159-424 172-497 (512)
33 KOG0730 AAA+-type ATPase [Post 100.0 5.6E-34 1.2E-38 311.2 19.7 241 164-411 180-422 (693)
34 PLN00020 ribulose bisphosphate 100.0 3.6E-33 7.9E-38 291.1 23.1 260 164-436 110-394 (413)
35 TIGR01243 CDC48 AAA family ATP 100.0 1.4E-32 3.1E-37 319.5 24.7 245 164-408 173-438 (733)
36 KOG0732 AAA+-type ATPase conta 100.0 1.1E-32 2.4E-37 316.1 19.5 250 162-411 258-531 (1080)
37 KOG0740 AAA+-type ATPase [Post 100.0 2.8E-32 6E-37 290.8 15.6 246 158-406 142-405 (428)
38 KOG0741 AAA+-type ATPase [Post 100.0 4.1E-32 8.8E-37 288.4 16.5 269 164-437 214-530 (744)
39 CHL00181 cbbX CbbX; Provisiona 99.9 2.7E-22 5.9E-27 208.6 21.0 223 168-398 22-271 (287)
40 TIGR02881 spore_V_K stage V sp 99.9 7.9E-22 1.7E-26 202.6 20.1 212 167-387 4-240 (261)
41 KOG0743 AAA+-type ATPase [Post 99.9 5.2E-22 1.1E-26 210.9 18.9 207 162-378 194-413 (457)
42 KOG0742 AAA+-type ATPase [Post 99.9 5.9E-22 1.3E-26 206.0 17.2 212 167-389 353-594 (630)
43 PF00004 AAA: ATPase family as 99.9 5.6E-22 1.2E-26 180.5 12.0 129 205-334 1-132 (132)
44 TIGR02880 cbbX_cfxQ probable R 99.9 1.4E-21 2.9E-26 203.2 16.5 212 168-387 20-255 (284)
45 TIGR02902 spore_lonB ATP-depen 99.9 4.8E-21 1E-25 214.9 16.9 265 109-403 5-330 (531)
46 PRK00080 ruvB Holliday junctio 99.8 1.3E-19 2.9E-24 192.1 21.0 216 162-405 18-250 (328)
47 PF05496 RuvB_N: Holliday junc 99.8 1.2E-19 2.5E-24 179.3 18.8 193 162-382 17-226 (233)
48 TIGR00635 ruvB Holliday juncti 99.8 1.7E-19 3.7E-24 189.0 20.6 211 166-404 1-228 (305)
49 KOG0736 Peroxisome assembly fa 99.8 6.5E-19 1.4E-23 195.3 19.3 231 167-405 399-653 (953)
50 KOG0744 AAA+-type ATPase [Post 99.8 2.7E-19 5.8E-24 182.1 13.4 242 158-403 130-412 (423)
51 COG0464 SpoVK ATPases of the A 99.8 4E-18 8.6E-23 190.5 20.7 218 188-407 4-228 (494)
52 PRK14956 DNA polymerase III su 99.8 4.4E-18 9.6E-23 185.8 20.4 208 158-402 7-243 (484)
53 KOG0735 AAA+-type ATPase [Post 99.8 3.7E-18 8E-23 187.8 19.7 258 169-436 408-682 (952)
54 COG2255 RuvB Holliday junction 99.8 5.4E-18 1.2E-22 170.6 18.8 215 163-405 20-251 (332)
55 PRK12323 DNA polymerase III su 99.8 2.7E-18 5.9E-23 191.7 17.3 203 161-400 8-244 (700)
56 COG2256 MGS1 ATPase related to 99.8 9.9E-18 2.1E-22 175.8 19.7 206 161-406 16-239 (436)
57 TIGR02639 ClpA ATP-dependent C 99.8 5E-18 1.1E-22 197.7 19.2 224 163-406 176-430 (731)
58 PRK07003 DNA polymerase III su 99.8 7.8E-18 1.7E-22 190.2 19.8 203 161-400 8-239 (830)
59 TIGR00763 lon ATP-dependent pr 99.8 7.2E-18 1.6E-22 197.4 19.7 163 170-348 321-505 (775)
60 PRK14962 DNA polymerase III su 99.8 1.8E-17 3.8E-22 183.1 20.3 205 162-403 7-240 (472)
61 PRK14961 DNA polymerase III su 99.8 2.5E-17 5.5E-22 177.1 21.0 212 160-402 7-241 (363)
62 PRK14960 DNA polymerase III su 99.8 1.9E-17 4.2E-22 185.3 20.0 204 161-401 7-239 (702)
63 PRK14958 DNA polymerase III su 99.8 1.6E-17 3.4E-22 185.2 17.8 205 160-401 7-240 (509)
64 PRK07994 DNA polymerase III su 99.8 3.8E-17 8.2E-22 185.0 20.6 203 162-401 9-240 (647)
65 PRK14949 DNA polymerase III su 99.7 4.9E-17 1.1E-21 186.8 20.8 209 161-400 8-239 (944)
66 PRK06645 DNA polymerase III su 99.7 5.3E-17 1.1E-21 180.2 20.3 217 158-402 10-253 (507)
67 PRK04195 replication factor C 99.7 7E-17 1.5E-21 179.9 21.4 212 158-402 3-222 (482)
68 PRK13342 recombination factor 99.7 1.6E-16 3.4E-21 173.8 23.7 203 162-406 5-220 (413)
69 PRK11034 clpA ATP-dependent Cl 99.7 1.7E-17 3.7E-22 191.8 16.4 222 165-406 182-434 (758)
70 PRK00149 dnaA chromosomal repl 99.7 1.3E-16 2.8E-21 176.3 21.5 219 164-406 117-350 (450)
71 PRK14964 DNA polymerase III su 99.7 1E-16 2.3E-21 176.7 19.8 203 162-401 6-237 (491)
72 PRK08691 DNA polymerase III su 99.7 7.9E-17 1.7E-21 181.9 19.2 211 161-402 8-241 (709)
73 TIGR00362 DnaA chromosomal rep 99.7 2.2E-16 4.8E-21 172.2 22.1 221 164-406 105-338 (405)
74 PLN03025 replication factor C 99.7 1.6E-16 3.4E-21 168.1 19.5 204 159-401 3-219 (319)
75 PRK14088 dnaA chromosomal repl 99.7 2.9E-16 6.3E-21 172.7 21.3 224 163-407 99-334 (440)
76 PRK14963 DNA polymerase III su 99.7 2.7E-16 5.9E-21 175.1 21.1 203 162-402 7-237 (504)
77 PRK14951 DNA polymerase III su 99.7 2E-16 4.4E-21 178.7 20.3 204 161-401 8-245 (618)
78 PRK05563 DNA polymerase III su 99.7 3E-16 6.6E-21 177.1 21.4 204 161-401 8-240 (559)
79 TIGR02928 orc1/cdc6 family rep 99.7 9.9E-16 2.1E-20 164.3 23.1 219 169-405 15-274 (365)
80 PRK12402 replication factor C 99.7 6.5E-16 1.4E-20 163.6 21.5 213 158-403 4-247 (337)
81 PRK14959 DNA polymerase III su 99.7 3.2E-16 6.9E-21 176.2 19.5 207 159-402 6-241 (624)
82 TIGR02397 dnaX_nterm DNA polym 99.7 5.1E-16 1.1E-20 165.8 20.1 208 159-403 4-240 (355)
83 PRK14969 DNA polymerase III su 99.7 2.1E-16 4.6E-21 177.1 17.8 210 162-402 9-241 (527)
84 PRK14957 DNA polymerase III su 99.7 5.7E-16 1.2E-20 173.0 20.1 204 161-401 8-240 (546)
85 TIGR03345 VI_ClpV1 type VI sec 99.7 6.6E-16 1.4E-20 181.7 20.4 219 163-402 181-428 (852)
86 TIGR03420 DnaA_homol_Hda DnaA 99.7 1.8E-15 4E-20 151.2 20.2 204 165-402 11-225 (226)
87 KOG0989 Replication factor C, 99.7 6.5E-16 1.4E-20 157.1 16.9 200 159-394 26-242 (346)
88 PRK14952 DNA polymerase III su 99.7 1.1E-15 2.4E-20 172.2 19.9 204 162-401 6-240 (584)
89 PHA02544 44 clamp loader, smal 99.7 1.9E-15 4.2E-20 159.1 20.7 207 158-399 10-225 (316)
90 PRK13341 recombination factor 99.7 1.6E-15 3.5E-20 174.8 21.3 214 158-405 17-247 (725)
91 PRK00411 cdc6 cell division co 99.7 5.2E-15 1.1E-19 160.5 24.0 222 167-405 28-282 (394)
92 PRK08903 DnaA regulatory inact 99.7 3.4E-15 7.3E-20 150.1 20.7 203 162-403 11-224 (227)
93 PRK07764 DNA polymerase III su 99.7 1.4E-15 2.9E-20 177.4 20.0 210 161-400 7-241 (824)
94 PRK14965 DNA polymerase III su 99.7 1.1E-15 2.3E-20 173.3 18.6 203 162-401 9-240 (576)
95 PRK14953 DNA polymerase III su 99.7 2E-15 4.4E-20 167.5 19.6 213 159-402 6-241 (486)
96 PRK07133 DNA polymerase III su 99.7 2.1E-15 4.5E-20 171.9 20.1 213 159-402 8-240 (725)
97 PRK14086 dnaA chromosomal repl 99.7 4.6E-15 9.9E-20 166.3 22.2 191 204-407 316-517 (617)
98 PRK05896 DNA polymerase III su 99.7 2E-15 4.3E-20 169.1 18.6 206 159-401 6-240 (605)
99 PRK07940 DNA polymerase III su 99.7 1.8E-15 4E-20 163.6 17.9 190 167-377 3-214 (394)
100 PRK09111 DNA polymerase III su 99.7 4.4E-15 9.5E-20 168.1 21.4 214 158-402 13-254 (598)
101 PRK06647 DNA polymerase III su 99.7 3.7E-15 7.9E-20 168.0 20.3 210 162-402 9-241 (563)
102 PRK14970 DNA polymerase III su 99.7 3.5E-15 7.6E-20 160.7 19.4 211 161-402 9-230 (367)
103 PRK06893 DNA replication initi 99.7 5.3E-15 1.1E-19 149.3 19.3 209 164-402 11-227 (229)
104 PRK08451 DNA polymerase III su 99.7 4.7E-15 1E-19 165.0 20.3 204 161-401 6-238 (535)
105 PRK10865 protein disaggregatio 99.6 2.5E-15 5.4E-20 177.2 18.5 201 163-384 172-400 (857)
106 PRK06305 DNA polymerase III su 99.6 6.2E-15 1.3E-19 162.6 20.3 204 162-402 10-243 (451)
107 PRK12422 chromosomal replicati 99.6 1.4E-14 3E-19 159.4 22.7 195 202-408 141-346 (445)
108 PTZ00112 origin recognition co 99.6 1.2E-14 2.5E-19 165.1 21.2 218 169-407 755-1008(1164)
109 PRK14955 DNA polymerase III su 99.6 4.3E-15 9.3E-20 161.7 17.3 215 161-402 8-254 (397)
110 PRK14087 dnaA chromosomal repl 99.6 1.5E-14 3.2E-19 159.5 21.5 190 203-405 142-348 (450)
111 PRK08084 DNA replication initi 99.6 1.8E-14 3.9E-19 146.0 20.4 205 164-402 17-233 (235)
112 TIGR03346 chaperone_ClpB ATP-d 99.6 5.7E-15 1.2E-19 174.6 19.0 205 163-388 167-399 (852)
113 KOG2028 ATPase related to the 99.6 5.5E-15 1.2E-19 152.7 15.3 214 158-404 127-367 (554)
114 PRK14948 DNA polymerase III su 99.6 1.9E-14 4.1E-19 163.9 21.1 210 159-400 6-240 (620)
115 CHL00095 clpC Clp protease ATP 99.6 8.2E-15 1.8E-19 172.8 18.7 202 165-387 175-403 (821)
116 PRK08727 hypothetical protein; 99.6 5.6E-14 1.2E-18 142.2 21.6 179 203-403 42-229 (233)
117 COG0466 Lon ATP-dependent Lon 99.6 8.5E-15 1.8E-19 162.9 16.4 164 169-348 323-508 (782)
118 KOG2004 Mitochondrial ATP-depe 99.6 9.3E-15 2E-19 161.6 16.3 205 169-389 411-653 (906)
119 PRK14954 DNA polymerase III su 99.6 3E-14 6.5E-19 161.6 21.0 214 162-402 9-254 (620)
120 COG2812 DnaX DNA polymerase II 99.6 7.9E-15 1.7E-19 161.6 15.5 208 162-400 9-239 (515)
121 PRK00440 rfc replication facto 99.6 3.9E-14 8.4E-19 148.8 20.1 207 158-403 6-224 (319)
122 TIGR02903 spore_lon_C ATP-depe 99.6 4.6E-14 1E-18 161.1 22.2 319 158-516 143-540 (615)
123 PRK14950 DNA polymerase III su 99.6 2.6E-14 5.7E-19 162.6 19.6 210 161-401 8-241 (585)
124 PRK05642 DNA replication initi 99.6 1.3E-13 2.8E-18 139.7 21.3 179 202-402 45-232 (234)
125 PRK05342 clpX ATP-dependent pr 99.6 6.1E-14 1.3E-18 152.6 19.5 218 166-385 67-378 (412)
126 PRK10787 DNA-binding ATP-depen 99.6 4.6E-14 9.9E-19 164.6 18.5 218 168-402 320-579 (784)
127 PRK06620 hypothetical protein; 99.6 1.1E-13 2.3E-18 138.4 17.5 194 163-402 10-213 (214)
128 TIGR02640 gas_vesic_GvpN gas v 99.6 2E-13 4.3E-18 140.6 19.0 185 203-407 22-259 (262)
129 COG0593 DnaA ATPase involved i 99.5 3.8E-13 8.3E-18 144.5 21.6 228 162-410 80-318 (408)
130 TIGR00390 hslU ATP-dependent p 99.5 1.6E-13 3.5E-18 147.2 18.3 173 170-344 13-342 (441)
131 PF00308 Bac_DnaA: Bacterial d 99.5 1.3E-13 2.9E-18 138.2 16.6 199 164-385 3-216 (219)
132 PRK13407 bchI magnesium chelat 99.5 8.4E-14 1.8E-18 147.4 15.2 215 165-407 4-308 (334)
133 PRK14971 DNA polymerase III su 99.5 3.8E-13 8.3E-18 153.2 21.4 203 162-401 10-242 (614)
134 COG1474 CDC6 Cdc6-related prot 99.5 6.4E-13 1.4E-17 142.6 20.8 215 171-405 19-265 (366)
135 PRK05201 hslU ATP-dependent pr 99.5 3.8E-13 8.2E-18 144.5 18.5 173 171-345 17-345 (443)
136 PF05673 DUF815: Protein of un 99.5 7.5E-13 1.6E-17 132.8 19.2 193 162-380 20-244 (249)
137 CHL00081 chlI Mg-protoporyphyr 99.5 2.3E-13 4.9E-18 144.6 15.6 222 164-409 12-326 (350)
138 COG1224 TIP49 DNA helicase TIP 99.5 1.2E-12 2.6E-17 135.5 20.2 99 304-405 321-432 (450)
139 TIGR00382 clpX endopeptidase C 99.5 4.8E-13 1E-17 145.0 17.8 213 171-385 79-384 (413)
140 PRK11034 clpA ATP-dependent Cl 99.5 7.3E-13 1.6E-17 153.6 18.7 166 170-350 459-668 (758)
141 TIGR02639 ClpA ATP-dependent C 99.5 1.1E-12 2.3E-17 153.2 19.1 197 169-381 454-707 (731)
142 PRK09112 DNA polymerase III su 99.5 1.9E-12 4.2E-17 138.4 19.1 189 164-380 18-243 (351)
143 TIGR02030 BchI-ChlI magnesium 99.5 1.2E-12 2.5E-17 139.1 16.9 215 167-408 2-312 (337)
144 PRK07471 DNA polymerase III su 99.4 2.8E-12 6E-17 137.8 18.1 185 164-378 14-239 (365)
145 cd00009 AAA The AAA+ (ATPases 99.4 2.4E-12 5.1E-17 117.3 15.0 121 201-333 18-150 (151)
146 TIGR02442 Cob-chelat-sub cobal 99.4 2.2E-12 4.8E-17 148.2 17.1 214 167-408 2-307 (633)
147 PRK09087 hypothetical protein; 99.4 2.4E-12 5.1E-17 129.7 15.1 171 204-405 46-222 (226)
148 TIGR01650 PD_CobS cobaltochela 99.4 2.3E-12 5.1E-17 135.1 15.2 139 202-350 64-235 (327)
149 COG3829 RocR Transcriptional r 99.4 6.9E-13 1.5E-17 144.6 11.2 206 165-399 241-491 (560)
150 PF05621 TniB: Bacterial TniB 99.4 5.2E-12 1.1E-16 130.4 15.9 214 172-400 37-284 (302)
151 PRK05564 DNA polymerase III su 99.4 6.5E-12 1.4E-16 132.5 16.7 169 167-368 2-182 (313)
152 KOG0991 Replication factor C, 99.4 7.6E-12 1.6E-16 123.1 15.3 213 155-403 13-235 (333)
153 COG0542 clpA ATP-binding subun 99.4 1.4E-11 3.1E-16 140.8 18.9 203 163-387 164-395 (786)
154 PRK15424 propionate catabolism 99.4 4.1E-12 8.9E-17 142.3 13.8 208 166-399 216-479 (538)
155 PHA02244 ATPase-like protein 99.4 2.6E-11 5.6E-16 128.7 18.8 119 203-337 120-263 (383)
156 KOG1969 DNA replication checkp 99.4 2.2E-11 4.8E-16 135.7 18.5 214 158-390 260-520 (877)
157 PRK07399 DNA polymerase III su 99.4 1.2E-11 2.6E-16 130.5 15.6 183 167-379 2-223 (314)
158 TIGR03345 VI_ClpV1 type VI sec 99.4 2.1E-11 4.5E-16 144.0 19.1 193 169-380 566-825 (852)
159 COG2204 AtoC Response regulato 99.3 5.1E-12 1.1E-16 137.7 12.2 208 166-399 138-385 (464)
160 TIGR00368 Mg chelatase-related 99.3 2.2E-11 4.8E-16 135.6 16.9 208 166-403 189-497 (499)
161 PRK10865 protein disaggregatio 99.3 4.1E-11 8.8E-16 141.8 19.2 168 168-350 567-781 (857)
162 TIGR02329 propionate_PrpR prop 99.3 1.1E-11 2.4E-16 138.9 13.3 209 166-400 209-465 (526)
163 TIGR03346 chaperone_ClpB ATP-d 99.3 4.8E-11 1E-15 141.5 19.2 200 168-382 564-822 (852)
164 TIGR03015 pepcterm_ATPase puta 99.3 1.1E-10 2.3E-15 119.9 19.3 190 204-405 45-266 (269)
165 TIGR00678 holB DNA polymerase 99.3 3.9E-11 8.5E-16 117.1 14.8 145 199-368 11-183 (188)
166 COG2607 Predicted ATPase (AAA+ 99.3 2.2E-10 4.8E-15 113.5 19.9 194 161-380 52-276 (287)
167 PRK13531 regulatory ATPase Rav 99.3 1.1E-10 2.4E-15 127.8 19.5 212 171-409 22-287 (498)
168 TIGR00764 lon_rel lon-related 99.3 5.4E-11 1.2E-15 135.8 17.7 101 303-405 268-391 (608)
169 COG0714 MoxR-like ATPases [Gen 99.3 1.3E-10 2.7E-15 123.7 19.1 133 203-347 44-202 (329)
170 COG3604 FhlA Transcriptional r 99.3 2.2E-11 4.8E-16 131.3 12.9 198 165-385 219-456 (550)
171 COG0470 HolB ATPase involved i 99.3 6E-11 1.3E-15 124.7 16.1 150 169-345 1-178 (325)
172 CHL00095 clpC Clp protease ATP 99.3 8.1E-11 1.8E-15 139.2 18.8 166 169-350 509-734 (821)
173 TIGR00602 rad24 checkpoint pro 99.3 1.4E-10 2.9E-15 132.0 18.7 260 157-438 72-391 (637)
174 smart00350 MCM minichromosome 99.3 6.7E-11 1.4E-15 132.8 16.0 220 169-405 203-504 (509)
175 KOG1942 DNA helicase, TBP-inte 99.3 2.5E-10 5.4E-15 115.7 18.3 100 303-405 325-438 (456)
176 TIGR02974 phageshock_pspF psp 99.3 6E-11 1.3E-15 126.1 14.5 198 171-397 1-242 (329)
177 smart00382 AAA ATPases associa 99.3 6.2E-11 1.3E-15 106.6 12.3 125 202-335 2-147 (148)
178 TIGR01817 nifA Nif-specific re 99.3 3.6E-11 7.9E-16 135.9 13.0 207 164-399 191-439 (534)
179 PRK05707 DNA polymerase III su 99.2 1.3E-10 2.8E-15 123.3 16.1 153 199-373 19-199 (328)
180 PRK11608 pspF phage shock prot 99.2 7.3E-11 1.6E-15 125.3 14.0 192 167-384 4-239 (326)
181 PRK10820 DNA-binding transcrip 99.2 1.2E-10 2.6E-15 131.0 16.0 206 164-398 199-447 (520)
182 PRK04132 replication factor C 99.2 2.1E-10 4.5E-15 133.7 18.1 170 205-401 567-750 (846)
183 COG0542 clpA ATP-binding subun 99.2 5.3E-11 1.1E-15 136.2 12.8 163 169-350 491-707 (786)
184 PRK11388 DNA-binding transcrip 99.2 1.2E-10 2.6E-15 134.4 16.0 209 165-402 321-568 (638)
185 PF06068 TIP49: TIP49 C-termin 99.2 2.3E-10 5.1E-15 120.5 16.2 65 167-238 22-88 (398)
186 PRK05022 anaerobic nitric oxid 99.2 1.3E-10 2.8E-15 130.6 15.5 193 167-385 185-420 (509)
187 PRK08058 DNA polymerase III su 99.2 9.5E-11 2.1E-15 124.6 13.4 149 167-346 3-180 (329)
188 PF01078 Mg_chelatase: Magnesi 99.2 1.8E-11 4E-16 120.4 7.3 119 167-312 1-158 (206)
189 TIGR02031 BchD-ChlD magnesium 99.2 3.5E-10 7.6E-15 128.9 17.9 188 204-407 18-260 (589)
190 PRK11331 5-methylcytosine-spec 99.2 3E-10 6.4E-15 123.6 15.0 141 168-334 174-357 (459)
191 COG1221 PspF Transcriptional r 99.2 6.6E-11 1.4E-15 127.0 9.1 195 165-385 74-309 (403)
192 PF07728 AAA_5: AAA domain (dy 99.2 4.5E-11 9.8E-16 110.6 6.9 110 204-326 1-139 (139)
193 PRK15429 formate hydrogenlyase 99.2 4.5E-10 9.7E-15 130.7 15.9 193 166-384 373-608 (686)
194 PRK09862 putative ATP-dependen 99.1 1E-09 2.2E-14 122.0 16.6 209 166-403 188-490 (506)
195 COG1219 ClpX ATP-dependent pro 99.1 2E-10 4.3E-15 117.8 9.3 123 171-298 63-203 (408)
196 KOG0741 AAA+-type ATPase [Post 99.1 1.7E-09 3.7E-14 117.0 15.2 156 183-346 525-684 (744)
197 PF00158 Sigma54_activat: Sigm 99.1 3.2E-10 6.8E-15 109.2 8.8 131 171-327 1-155 (168)
198 PF13177 DNA_pol3_delta2: DNA 99.1 7E-10 1.5E-14 106.1 11.0 133 173-334 1-160 (162)
199 KOG0990 Replication factor C, 99.1 2.6E-09 5.6E-14 110.0 15.4 197 155-385 27-237 (360)
200 PRK06871 DNA polymerase III su 99.1 4.3E-09 9.2E-14 111.3 17.2 135 198-347 20-178 (325)
201 PRK06964 DNA polymerase III su 99.0 1.5E-09 3.2E-14 115.5 12.8 135 198-347 17-203 (342)
202 PRK08116 hypothetical protein; 99.0 1.6E-09 3.4E-14 112.0 12.3 123 202-337 114-251 (268)
203 COG1220 HslU ATP-dependent pro 99.0 1.7E-09 3.7E-14 111.7 12.1 80 264-345 253-346 (444)
204 PRK08769 DNA polymerase III su 99.0 6.3E-09 1.4E-13 109.8 16.5 154 198-371 22-203 (319)
205 smart00763 AAA_PrkA PrkA AAA d 99.0 4.4E-09 9.6E-14 111.7 14.9 84 167-256 48-143 (361)
206 COG0606 Predicted ATPase with 99.0 7E-10 1.5E-14 119.9 8.7 210 165-403 175-483 (490)
207 TIGR02915 PEP_resp_reg putativ 99.0 2.2E-09 4.7E-14 118.5 12.3 203 167-398 137-382 (445)
208 PRK07993 DNA polymerase III su 99.0 7.5E-09 1.6E-13 110.2 15.9 152 198-368 20-196 (334)
209 KOG1514 Origin recognition com 99.0 1.2E-08 2.6E-13 114.1 16.6 194 204-407 424-657 (767)
210 PF07724 AAA_2: AAA domain (Cd 99.0 1.2E-09 2.6E-14 105.4 7.7 108 203-314 4-131 (171)
211 PTZ00111 DNA replication licen 99.0 1.5E-08 3.3E-13 117.9 17.3 127 202-344 492-653 (915)
212 PRK06090 DNA polymerase III su 98.9 1.8E-08 4E-13 106.3 14.8 131 198-346 21-178 (319)
213 PRK10923 glnG nitrogen regulat 98.9 1.5E-08 3.3E-13 112.6 14.8 205 167-400 136-383 (469)
214 COG1239 ChlI Mg-chelatase subu 98.9 1.6E-08 3.6E-13 108.0 14.1 159 166-349 14-233 (423)
215 PRK11361 acetoacetate metaboli 98.9 1.9E-08 4.1E-13 111.3 15.2 205 167-400 141-388 (457)
216 KOG2680 DNA helicase TIP49, TB 98.9 7.5E-08 1.6E-12 98.2 17.5 91 313-406 339-430 (454)
217 PF14532 Sigma54_activ_2: Sigm 98.9 2.8E-09 6.1E-14 99.0 6.6 106 172-312 1-109 (138)
218 PRK12377 putative replication 98.9 1.9E-08 4E-13 102.8 13.0 100 203-313 102-206 (248)
219 PRK13765 ATP-dependent proteas 98.9 1.2E-08 2.6E-13 116.6 12.6 100 303-404 277-399 (637)
220 KOG2035 Replication factor C, 98.9 7E-08 1.5E-12 97.7 15.9 178 159-368 3-220 (351)
221 KOG0745 Putative ATP-dependent 98.8 9.9E-09 2.1E-13 109.1 9.9 96 203-298 227-332 (564)
222 PRK15115 response regulator Gl 98.8 3.1E-08 6.7E-13 109.4 13.4 199 170-400 135-379 (444)
223 PF07726 AAA_3: ATPase family 98.8 1.2E-09 2.6E-14 99.5 1.0 109 204-326 1-129 (131)
224 KOG2227 Pre-initiation complex 98.8 1.5E-07 3.2E-12 101.4 16.7 203 169-389 150-383 (529)
225 PRK07952 DNA replication prote 98.8 3.8E-08 8.3E-13 100.2 11.6 132 164-313 67-205 (244)
226 PRK08699 DNA polymerase III su 98.8 4E-08 8.7E-13 104.3 11.7 133 199-346 18-183 (325)
227 TIGR01818 ntrC nitrogen regula 98.8 3.9E-08 8.5E-13 109.1 12.1 206 168-402 133-381 (463)
228 PF03215 Rad17: Rad17 cell cyc 98.8 2.1E-07 4.6E-12 104.3 17.4 210 157-386 7-269 (519)
229 PRK08939 primosomal protein Dn 98.8 4.5E-08 9.8E-13 103.0 11.4 101 166-273 124-229 (306)
230 PRK13406 bchD magnesium chelat 98.7 1E-07 2.2E-12 108.3 14.1 190 203-408 26-253 (584)
231 PRK08181 transposase; Validate 98.7 8.8E-08 1.9E-12 99.0 12.2 99 203-313 107-209 (269)
232 PRK10365 transcriptional regul 98.7 7E-08 1.5E-12 106.3 11.2 200 170-401 140-385 (441)
233 PF01637 Arch_ATPase: Archaeal 98.7 1.9E-07 4.2E-12 92.5 12.9 164 202-374 20-231 (234)
234 PRK06835 DNA replication prote 98.7 1.3E-07 2.7E-12 100.6 11.4 69 203-273 184-258 (329)
235 PF13173 AAA_14: AAA domain 98.6 2E-07 4.2E-12 85.5 10.8 69 203-273 3-73 (128)
236 COG3283 TyrR Transcriptional r 98.6 1.7E-07 3.6E-12 97.8 11.3 207 164-399 199-443 (511)
237 PRK06526 transposase; Provisio 98.6 7.8E-08 1.7E-12 98.7 8.7 100 202-313 98-201 (254)
238 COG3284 AcoR Transcriptional a 98.6 5.9E-08 1.3E-12 108.1 6.3 179 204-402 338-554 (606)
239 COG1484 DnaC DNA replication p 98.6 4.1E-07 9E-12 93.4 12.1 71 201-273 104-179 (254)
240 PRK05917 DNA polymerase III su 98.6 8.4E-07 1.8E-11 92.3 14.2 123 198-335 15-154 (290)
241 KOG1051 Chaperone HSP104 and r 98.6 4.1E-07 8.8E-12 106.1 12.9 129 169-313 562-711 (898)
242 PRK09183 transposase/IS protei 98.6 2.5E-07 5.5E-12 95.2 10.1 71 202-273 102-176 (259)
243 PRK06921 hypothetical protein; 98.6 3.8E-07 8.2E-12 94.3 11.4 68 202-272 117-188 (266)
244 KOG1970 Checkpoint RAD17-RFC c 98.5 1.7E-06 3.6E-11 94.9 15.9 212 156-385 69-320 (634)
245 PF01695 IstB_IS21: IstB-like 98.5 1.4E-07 3.1E-12 91.6 6.2 71 201-273 46-120 (178)
246 PF13401 AAA_22: AAA domain; P 98.5 4.8E-07 1E-11 82.2 8.3 99 202-311 4-126 (131)
247 COG3267 ExeA Type II secretory 98.5 8E-06 1.7E-10 82.4 17.1 184 204-399 53-267 (269)
248 COG1241 MCM2 Predicted ATPase 98.4 1.2E-06 2.5E-11 100.2 12.2 220 168-405 285-592 (682)
249 PRK07276 DNA polymerase III su 98.4 6.9E-06 1.5E-10 85.7 15.9 130 198-345 20-172 (290)
250 PF12775 AAA_7: P-loop contain 98.4 1.3E-06 2.7E-11 90.7 10.3 134 203-350 34-195 (272)
251 PF00493 MCM: MCM2/3/5 family 98.4 2.6E-07 5.7E-12 98.4 4.7 215 170-404 25-325 (331)
252 KOG0480 DNA replication licens 98.4 1.3E-06 2.9E-11 96.9 10.2 221 168-405 344-643 (764)
253 cd01120 RecA-like_NTPases RecA 98.4 1.2E-06 2.5E-11 81.8 7.9 72 205-276 2-100 (165)
254 PF05729 NACHT: NACHT domain 98.3 4.3E-06 9.3E-11 78.5 11.4 141 204-350 2-165 (166)
255 PF03969 AFG1_ATPase: AFG1-lik 98.3 3.8E-06 8.2E-11 90.4 12.2 142 199-362 59-207 (362)
256 PRK05818 DNA polymerase III su 98.2 1.7E-05 3.8E-10 81.0 13.5 121 200-335 5-147 (261)
257 KOG0478 DNA replication licens 98.2 8.1E-06 1.8E-10 91.4 11.6 125 203-339 463-617 (804)
258 PRK07132 DNA polymerase III su 98.2 2.1E-05 4.5E-10 82.6 14.0 126 199-346 15-160 (299)
259 PF12774 AAA_6: Hydrolytic ATP 98.2 1.4E-05 3.1E-10 80.9 12.1 125 203-344 33-176 (231)
260 PLN03210 Resistant to P. syrin 98.2 1.9E-05 4.1E-10 97.4 15.3 178 164-371 179-390 (1153)
261 PF00931 NB-ARC: NB-ARC domain 98.1 3.2E-05 7E-10 79.9 13.8 172 180-378 4-203 (287)
262 TIGR02237 recomb_radB DNA repa 98.1 1.1E-05 2.4E-10 79.8 9.8 111 201-311 11-148 (209)
263 KOG2383 Predicted ATPase [Gene 98.1 2.9E-05 6.2E-10 82.7 12.9 157 199-382 111-297 (467)
264 COG1485 Predicted ATPase [Gene 98.0 2.6E-05 5.6E-10 82.1 10.6 171 167-361 23-209 (367)
265 cd01124 KaiC KaiC is a circadi 98.0 3.8E-05 8.3E-10 74.2 10.7 71 205-275 2-109 (187)
266 KOG0482 DNA replication licens 98.0 3.3E-05 7.2E-10 84.0 10.3 220 170-407 343-640 (721)
267 KOG1968 Replication factor C, 98.0 2E-05 4.2E-10 92.8 9.0 206 162-384 313-535 (871)
268 PRK11823 DNA repair protein Ra 98.0 3.6E-05 7.8E-10 85.3 10.7 77 200-276 78-171 (446)
269 PF00910 RNA_helicase: RNA hel 98.0 2.3E-05 5E-10 69.6 7.4 23 205-227 1-23 (107)
270 TIGR02688 conserved hypothetic 97.9 0.00021 4.6E-09 77.6 15.6 93 202-312 209-314 (449)
271 PRK08118 topology modulation p 97.9 3.7E-05 7.9E-10 74.0 8.3 101 204-350 3-103 (167)
272 cd01121 Sms Sms (bacterial rad 97.9 5.5E-05 1.2E-09 81.9 10.4 77 200-276 80-173 (372)
273 PHA00729 NTP-binding motif con 97.9 2.4E-05 5.3E-10 78.5 6.8 25 203-227 18-42 (226)
274 COG1373 Predicted ATPase (AAA+ 97.8 0.0011 2.5E-08 72.5 18.1 123 204-342 39-161 (398)
275 PRK09361 radB DNA repair and r 97.8 0.00011 2.3E-09 73.7 9.1 111 200-311 21-160 (225)
276 PRK06067 flagellar accessory p 97.7 0.00021 4.6E-09 72.2 11.2 40 198-237 21-63 (234)
277 TIGR01618 phage_P_loop phage n 97.7 7.4E-05 1.6E-09 75.0 7.7 25 200-224 10-34 (220)
278 KOG1051 Chaperone HSP104 and r 97.7 0.00022 4.7E-09 83.8 12.6 162 167-349 184-364 (898)
279 COG1618 Predicted nucleotide k 97.7 0.00025 5.4E-09 67.2 10.6 27 200-226 3-29 (179)
280 PRK08533 flagellar accessory p 97.7 0.00027 5.8E-09 71.6 11.8 74 201-274 23-130 (230)
281 TIGR02012 tigrfam_recA protein 97.7 0.00011 2.4E-09 77.7 9.3 108 203-310 56-189 (321)
282 cd01394 radB RadB. The archaea 97.7 0.00023 5.1E-09 70.9 10.7 36 201-236 18-56 (218)
283 PRK00131 aroK shikimate kinase 97.7 0.00011 2.3E-09 70.0 7.8 33 201-233 3-35 (175)
284 KOG2543 Origin recognition com 97.7 0.0008 1.7E-08 71.6 14.7 160 170-348 7-193 (438)
285 PTZ00202 tuzin; Provisional 97.7 0.0028 6.2E-08 69.2 19.2 207 167-407 260-484 (550)
286 PF13207 AAA_17: AAA domain; P 97.7 3.2E-05 6.9E-10 69.4 3.7 30 205-234 2-31 (121)
287 KOG2170 ATPase of the AAA+ sup 97.7 0.00089 1.9E-08 69.2 14.2 95 170-273 83-190 (344)
288 PF05707 Zot: Zonular occluden 97.6 3.9E-05 8.5E-10 75.4 3.9 124 205-336 3-147 (193)
289 PRK14722 flhF flagellar biosyn 97.6 0.00022 4.7E-09 77.1 9.6 110 201-321 136-267 (374)
290 PF07693 KAP_NTPase: KAP famil 97.6 0.0011 2.3E-08 70.0 14.7 80 260-350 171-265 (325)
291 KOG0477 DNA replication licens 97.6 0.00028 6.1E-09 78.6 10.4 30 203-232 483-512 (854)
292 PRK15455 PrkA family serine pr 97.6 8.6E-05 1.9E-09 83.3 6.3 63 167-235 74-137 (644)
293 TIGR00416 sms DNA repair prote 97.6 0.0004 8.7E-09 77.2 11.3 76 200-275 92-184 (454)
294 cd00983 recA RecA is a bacter 97.6 0.00034 7.3E-09 74.2 9.9 108 203-310 56-189 (325)
295 PRK12723 flagellar biosynthesi 97.6 0.00065 1.4E-08 73.9 12.4 131 200-341 172-328 (388)
296 COG5271 MDN1 AAA ATPase contai 97.6 0.00027 5.8E-09 85.3 9.7 135 202-350 1543-1705(4600)
297 PF13604 AAA_30: AAA domain; P 97.6 0.00031 6.7E-09 69.4 9.0 97 203-311 19-131 (196)
298 TIGR02858 spore_III_AA stage I 97.5 0.0002 4.2E-09 74.3 7.5 113 203-333 112-256 (270)
299 cd00046 DEXDc DEAD-like helica 97.5 0.00065 1.4E-08 60.7 9.8 24 203-226 1-24 (144)
300 PF13671 AAA_33: AAA domain; P 97.5 0.00026 5.7E-09 65.2 7.4 33 205-239 2-34 (143)
301 PRK07261 topology modulation p 97.5 0.00017 3.7E-09 69.6 6.3 32 204-235 2-33 (171)
302 PRK04296 thymidine kinase; Pro 97.5 0.00051 1.1E-08 67.4 9.7 70 204-273 4-90 (190)
303 KOG2228 Origin recognition com 97.5 0.00072 1.6E-08 70.9 10.9 158 171-348 26-219 (408)
304 PF05272 VirE: Virulence-assoc 97.5 0.00057 1.2E-08 67.7 9.8 125 178-334 34-169 (198)
305 cd01123 Rad51_DMC1_radA Rad51_ 97.5 0.00033 7.1E-09 70.5 8.1 112 199-310 16-167 (235)
306 cd01393 recA_like RecA is a b 97.5 0.00047 1E-08 68.9 9.2 111 200-310 17-166 (226)
307 KOG0481 DNA replication licens 97.5 0.00046 1E-08 75.4 9.5 128 203-342 365-521 (729)
308 PHA02624 large T antigen; Prov 97.5 0.00057 1.2E-08 77.2 10.4 117 203-334 432-561 (647)
309 PF06309 Torsin: Torsin; Inte 97.5 0.00086 1.9E-08 61.3 9.7 52 169-226 25-77 (127)
310 cd03283 ABC_MutS-like MutS-lik 97.5 0.0005 1.1E-08 68.0 8.9 103 203-315 26-150 (199)
311 PF06745 KaiC: KaiC; InterPro 97.5 0.00062 1.3E-08 68.3 9.8 97 198-296 15-148 (226)
312 PRK14974 cell division protein 97.4 0.0011 2.4E-08 70.7 12.1 73 201-273 139-234 (336)
313 PF14516 AAA_35: AAA-like doma 97.4 0.0059 1.3E-07 65.2 17.6 168 202-379 31-241 (331)
314 PRK10536 hypothetical protein; 97.4 0.00055 1.2E-08 70.1 9.2 45 167-225 53-97 (262)
315 cd00984 DnaB_C DnaB helicase C 97.4 0.0011 2.3E-08 67.0 11.3 38 198-235 9-50 (242)
316 PRK06762 hypothetical protein; 97.4 0.00045 9.8E-09 65.8 7.9 40 201-240 1-40 (166)
317 COG5245 DYN1 Dynein, heavy cha 97.4 0.001 2.2E-08 80.0 11.8 187 201-397 1493-1727(3164)
318 PF13191 AAA_16: AAA ATPase do 97.4 0.00015 3.3E-09 69.5 4.3 59 171-238 2-63 (185)
319 COG4650 RtcR Sigma54-dependent 97.4 0.00079 1.7E-08 69.2 9.3 73 203-275 209-296 (531)
320 PRK05973 replicative DNA helic 97.4 0.0016 3.5E-08 66.2 11.6 35 202-236 64-101 (237)
321 TIGR03877 thermo_KaiC_1 KaiC d 97.3 0.0014 3.1E-08 66.5 10.8 40 198-237 17-59 (237)
322 PRK05800 cobU adenosylcobinami 97.3 0.00096 2.1E-08 64.4 8.8 34 204-237 3-36 (170)
323 COG4088 Predicted nucleotide k 97.3 0.00086 1.9E-08 66.0 8.1 68 204-273 3-85 (261)
324 COG1116 TauB ABC-type nitrate/ 97.3 0.00076 1.7E-08 68.3 8.1 21 204-224 31-51 (248)
325 PRK06581 DNA polymerase III su 97.3 0.0031 6.7E-08 63.9 12.3 149 199-364 12-175 (263)
326 cd01131 PilT Pilus retraction 97.3 0.00094 2E-08 66.0 8.7 67 204-270 3-83 (198)
327 PRK09354 recA recombinase A; P 97.3 0.00089 1.9E-08 71.6 8.9 107 203-309 61-193 (349)
328 PF03266 NTPase_1: NTPase; In 97.3 0.00044 9.6E-09 66.6 6.1 23 204-226 1-23 (168)
329 PRK13947 shikimate kinase; Pro 97.3 0.00025 5.4E-09 67.7 4.2 31 204-234 3-33 (171)
330 PF00437 T2SE: Type II/IV secr 97.2 0.00033 7.2E-09 72.3 5.1 99 164-272 99-208 (270)
331 cd01122 GP4d_helicase GP4d_hel 97.2 0.0014 3.1E-08 67.5 9.8 37 199-235 27-67 (271)
332 TIGR03574 selen_PSTK L-seryl-t 97.2 0.0019 4.2E-08 65.9 10.6 36 205-240 2-40 (249)
333 PRK00625 shikimate kinase; Pro 97.2 0.00028 6E-09 68.4 4.1 31 204-234 2-32 (173)
334 PRK03839 putative kinase; Prov 97.2 0.00027 5.9E-09 68.3 3.8 31 204-234 2-32 (180)
335 PRK00771 signal recognition pa 97.2 0.0035 7.6E-08 69.3 12.8 72 200-273 93-187 (437)
336 cd02020 CMPK Cytidine monophos 97.2 0.0011 2.3E-08 61.2 7.5 30 205-234 2-31 (147)
337 PRK04841 transcriptional regul 97.2 0.004 8.6E-08 74.8 14.4 155 203-375 33-223 (903)
338 cd00464 SK Shikimate kinase (S 97.2 0.00033 7.1E-09 65.4 3.9 31 204-234 1-31 (154)
339 COG0703 AroK Shikimate kinase 97.2 0.0011 2.3E-08 63.9 7.4 32 203-234 3-34 (172)
340 cd01128 rho_factor Transcripti 97.2 0.0021 4.6E-08 65.9 9.9 26 203-228 17-42 (249)
341 PRK13946 shikimate kinase; Pro 97.2 0.0011 2.3E-08 64.7 7.4 34 201-234 9-42 (184)
342 PF00448 SRP54: SRP54-type pro 97.2 0.0021 4.5E-08 63.6 9.5 108 202-317 1-131 (196)
343 PLN02200 adenylate kinase fami 97.2 0.00053 1.2E-08 69.6 5.3 42 198-241 39-80 (234)
344 cd00227 CPT Chloramphenicol (C 97.2 0.00043 9.3E-09 66.8 4.4 38 203-240 3-40 (175)
345 PRK13948 shikimate kinase; Pro 97.1 0.00074 1.6E-08 66.0 6.0 43 200-244 8-50 (182)
346 TIGR02782 TrbB_P P-type conjug 97.1 0.00037 8E-09 73.4 4.1 69 203-271 133-214 (299)
347 TIGR03878 thermo_KaiC_2 KaiC d 97.1 0.0029 6.4E-08 65.2 10.5 37 200-236 34-73 (259)
348 PRK11889 flhF flagellar biosyn 97.1 0.0057 1.2E-07 66.3 12.8 104 201-312 240-363 (436)
349 TIGR01359 UMP_CMP_kin_fam UMP- 97.1 0.00041 9E-09 67.0 3.9 35 205-241 2-36 (183)
350 PRK13949 shikimate kinase; Pro 97.1 0.00043 9.3E-09 66.7 3.9 31 204-234 3-33 (169)
351 PRK14531 adenylate kinase; Pro 97.1 0.00053 1.1E-08 66.7 4.4 35 203-239 3-37 (183)
352 PRK09376 rho transcription ter 97.1 0.00072 1.6E-08 73.1 5.5 24 204-227 171-194 (416)
353 PRK14532 adenylate kinase; Pro 97.1 0.00049 1.1E-08 67.0 4.0 36 204-241 2-37 (188)
354 PRK12339 2-phosphoglycerate ki 97.1 0.0056 1.2E-07 60.6 11.3 30 202-231 3-32 (197)
355 KOG3347 Predicted nucleotide k 97.0 0.00044 9.5E-09 64.6 3.2 31 204-234 9-39 (176)
356 PF10236 DAP3: Mitochondrial r 97.0 0.02 4.2E-07 60.7 16.2 115 261-376 156-308 (309)
357 cd01130 VirB11-like_ATPase Typ 97.0 0.00065 1.4E-08 66.3 4.7 70 202-271 25-110 (186)
358 cd03281 ABC_MSH5_euk MutS5 hom 97.0 0.0052 1.1E-07 61.5 11.3 23 202-224 29-51 (213)
359 COG3854 SpoIIIAA ncharacterize 97.0 0.0031 6.8E-08 63.1 9.3 71 203-273 138-230 (308)
360 cd02027 APSK Adenosine 5'-phos 97.0 0.0022 4.8E-08 60.4 7.8 35 205-239 2-39 (149)
361 TIGR03880 KaiC_arch_3 KaiC dom 97.0 0.0049 1.1E-07 61.7 10.8 38 200-237 14-54 (224)
362 PRK06217 hypothetical protein; 97.0 0.00062 1.3E-08 66.2 4.0 31 204-234 3-33 (183)
363 TIGR01420 pilT_fam pilus retra 97.0 0.0015 3.3E-08 70.1 7.2 69 203-271 123-205 (343)
364 PRK12724 flagellar biosynthesi 97.0 0.008 1.7E-07 65.8 12.7 112 201-320 222-353 (432)
365 PRK13695 putative NTPase; Prov 97.0 0.0064 1.4E-07 58.5 10.8 23 204-226 2-24 (174)
366 cd01125 repA Hexameric Replica 97.0 0.0041 8.9E-08 63.1 9.9 21 205-225 4-24 (239)
367 cd02021 GntK Gluconate kinase 97.0 0.00065 1.4E-08 63.5 3.7 33 205-239 2-34 (150)
368 PRK00279 adk adenylate kinase; 97.0 0.004 8.6E-08 62.2 9.5 35 204-240 2-36 (215)
369 PRK06547 hypothetical protein; 97.0 0.0008 1.7E-08 65.1 4.3 35 200-234 13-47 (172)
370 PHA02774 E1; Provisional 97.0 0.0022 4.7E-08 72.3 8.2 33 203-235 435-468 (613)
371 cd01428 ADK Adenylate kinase ( 96.9 0.00069 1.5E-08 65.9 3.8 34 205-240 2-35 (194)
372 TIGR03881 KaiC_arch_4 KaiC dom 96.9 0.006 1.3E-07 61.2 10.7 38 198-235 16-56 (229)
373 PRK13900 type IV secretion sys 96.9 0.0016 3.5E-08 69.6 6.9 70 202-271 160-245 (332)
374 PF13481 AAA_25: AAA domain; P 96.9 0.0034 7.3E-08 61.0 8.6 73 204-276 34-156 (193)
375 PRK04301 radA DNA repair and r 96.9 0.0031 6.7E-08 66.9 8.9 113 199-311 99-251 (317)
376 cd03216 ABC_Carb_Monos_I This 96.9 0.0034 7.4E-08 59.9 8.2 104 201-314 25-143 (163)
377 PRK10867 signal recognition pa 96.9 0.015 3.3E-07 64.2 14.3 75 199-273 97-195 (433)
378 PRK04328 hypothetical protein; 96.9 0.0074 1.6E-07 61.8 11.1 37 199-235 20-59 (249)
379 PTZ00088 adenylate kinase 1; P 96.9 0.001 2.3E-08 67.3 4.7 33 201-233 5-37 (229)
380 PF01745 IPT: Isopentenyl tran 96.9 0.0015 3.4E-08 64.7 5.7 134 204-350 3-141 (233)
381 TIGR01313 therm_gnt_kin carboh 96.9 0.00074 1.6E-08 64.1 3.4 32 205-238 1-32 (163)
382 PRK14530 adenylate kinase; Pro 96.9 0.0009 2E-08 66.8 4.1 30 204-233 5-34 (215)
383 COG0563 Adk Adenylate kinase a 96.9 0.0013 2.7E-08 64.1 5.0 33 204-238 2-34 (178)
384 PRK08233 hypothetical protein; 96.9 0.0038 8.2E-08 59.9 8.3 33 203-235 4-37 (182)
385 TIGR02236 recomb_radA DNA repa 96.9 0.0036 7.8E-08 66.1 8.7 112 199-310 92-244 (310)
386 PRK03731 aroL shikimate kinase 96.9 0.0011 2.3E-08 63.5 4.2 31 203-233 3-33 (171)
387 COG2874 FlaH Predicted ATPases 96.8 0.0098 2.1E-07 59.0 10.8 123 192-322 16-176 (235)
388 PRK08154 anaerobic benzoate ca 96.8 0.0032 6.9E-08 66.6 8.1 35 199-233 130-164 (309)
389 PRK05057 aroK shikimate kinase 96.8 0.0012 2.5E-08 63.9 4.3 34 202-235 4-37 (172)
390 PF04665 Pox_A32: Poxvirus A32 96.8 0.017 3.7E-07 58.8 12.9 134 200-348 11-170 (241)
391 COG1102 Cmk Cytidylate kinase 96.8 0.00092 2E-08 63.4 3.4 28 205-232 3-30 (179)
392 cd03222 ABC_RNaseL_inhibitor T 96.8 0.0054 1.2E-07 59.6 8.9 69 203-272 26-100 (177)
393 cd03115 SRP The signal recogni 96.8 0.013 2.8E-07 56.1 11.5 35 204-238 2-39 (173)
394 PHA02530 pseT polynucleotide k 96.8 0.0033 7.3E-08 65.7 8.0 38 202-240 2-39 (300)
395 TIGR02788 VirB11 P-type DNA tr 96.8 0.0021 4.6E-08 67.9 6.5 71 201-271 143-228 (308)
396 KOG3928 Mitochondrial ribosome 96.8 0.022 4.7E-07 61.5 13.9 115 262-378 316-457 (461)
397 PF02562 PhoH: PhoH-like prote 96.8 0.0013 2.8E-08 65.3 4.5 23 204-226 21-43 (205)
398 PRK13764 ATPase; Provisional 96.8 0.0017 3.6E-08 74.2 6.0 70 202-272 257-335 (602)
399 PRK06696 uridine kinase; Valid 96.8 0.0024 5.2E-08 64.2 6.5 39 201-239 21-62 (223)
400 PF09848 DUF2075: Uncharacteri 96.8 0.0047 1E-07 66.5 9.1 23 204-226 3-25 (352)
401 PRK13833 conjugal transfer pro 96.8 0.0015 3.3E-08 69.4 5.1 70 202-271 144-225 (323)
402 TIGR02655 circ_KaiC circadian 96.8 0.0056 1.2E-07 68.8 9.9 74 201-274 262-366 (484)
403 TIGR02238 recomb_DMC1 meiotic 96.8 0.005 1.1E-07 65.3 9.0 109 201-309 95-242 (313)
404 PRK14528 adenylate kinase; Pro 96.8 0.0013 2.8E-08 64.3 4.1 30 204-233 3-32 (186)
405 TIGR03499 FlhF flagellar biosy 96.8 0.0054 1.2E-07 64.1 9.0 38 201-238 193-235 (282)
406 PF12780 AAA_8: P-loop contain 96.8 0.011 2.4E-07 61.3 11.1 91 170-272 9-100 (268)
407 smart00487 DEXDc DEAD-like hel 96.7 0.0086 1.9E-07 56.8 9.6 33 203-235 25-62 (201)
408 cd02019 NK Nucleoside/nucleoti 96.7 0.0035 7.7E-08 51.1 5.9 30 205-234 2-32 (69)
409 PRK14527 adenylate kinase; Pro 96.7 0.0014 3E-08 64.2 4.1 33 200-232 4-36 (191)
410 PRK04040 adenylate kinase; Pro 96.7 0.0014 3.1E-08 64.3 4.2 30 202-231 2-33 (188)
411 PRK13808 adenylate kinase; Pro 96.7 0.011 2.4E-07 62.9 11.1 34 204-239 2-35 (333)
412 PRK05703 flhF flagellar biosyn 96.7 0.014 3.1E-07 64.4 12.3 37 202-238 221-262 (424)
413 smart00534 MUTSac ATPase domai 96.7 0.0079 1.7E-07 58.7 9.2 19 205-223 2-20 (185)
414 cd01129 PulE-GspE PulE/GspE Th 96.7 0.0047 1E-07 63.9 8.0 94 166-272 57-160 (264)
415 PRK13894 conjugal transfer ATP 96.7 0.0018 3.8E-08 68.8 5.0 70 202-271 148-229 (319)
416 PF06414 Zeta_toxin: Zeta toxi 96.7 0.0047 1E-07 60.9 7.6 43 199-241 12-55 (199)
417 PRK13851 type IV secretion sys 96.7 0.0025 5.4E-08 68.3 6.1 71 201-271 161-246 (344)
418 TIGR01526 nadR_NMN_Atrans nico 96.7 0.0039 8.4E-08 66.5 7.5 69 203-273 163-243 (325)
419 TIGR01360 aden_kin_iso1 adenyl 96.7 0.0016 3.4E-08 62.9 3.9 33 204-238 5-37 (188)
420 TIGR00064 ftsY signal recognit 96.7 0.036 7.9E-07 57.6 14.2 38 199-236 69-109 (272)
421 COG2805 PilT Tfp pilus assembl 96.7 0.0092 2E-07 62.0 9.5 93 202-311 124-231 (353)
422 PLN03187 meiotic recombination 96.6 0.0086 1.9E-07 64.2 9.7 107 203-309 127-272 (344)
423 PF08298 AAA_PrkA: PrkA AAA do 96.6 0.0039 8.4E-08 66.4 6.9 84 167-256 58-143 (358)
424 cd00544 CobU Adenosylcobinamid 96.6 0.015 3.4E-07 56.0 10.5 69 205-275 2-87 (169)
425 PRK02496 adk adenylate kinase; 96.6 0.0016 3.4E-08 63.2 3.7 30 204-233 3-32 (184)
426 PRK10416 signal recognition pa 96.6 0.019 4.1E-07 61.0 12.1 37 200-236 112-151 (318)
427 TIGR01425 SRP54_euk signal rec 96.6 0.032 6.8E-07 61.5 14.1 73 200-272 98-193 (429)
428 TIGR01351 adk adenylate kinase 96.6 0.0016 3.5E-08 64.7 3.8 33 205-239 2-34 (210)
429 TIGR01448 recD_rel helicase, p 96.6 0.0061 1.3E-07 71.7 9.2 99 204-315 340-457 (720)
430 cd00267 ABC_ATPase ABC (ATP-bi 96.6 0.0051 1.1E-07 58.1 7.0 102 203-315 26-142 (157)
431 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.6 0.011 2.3E-07 55.4 9.1 70 201-272 25-99 (144)
432 PTZ00035 Rad51 protein; Provis 96.6 0.011 2.4E-07 63.4 10.2 109 201-309 117-264 (337)
433 COG1936 Predicted nucleotide k 96.6 0.0015 3.2E-08 62.7 3.1 30 204-234 2-31 (180)
434 PRK09519 recA DNA recombinatio 96.6 0.0086 1.9E-07 70.2 9.9 110 201-310 59-194 (790)
435 PF00406 ADK: Adenylate kinase 96.6 0.004 8.6E-08 58.4 6.0 35 207-243 1-35 (151)
436 PF13245 AAA_19: Part of AAA d 96.6 0.0031 6.7E-08 52.7 4.5 32 204-235 12-50 (76)
437 TIGR02655 circ_KaiC circadian 96.6 0.015 3.2E-07 65.4 11.5 39 199-237 18-60 (484)
438 TIGR00959 ffh signal recogniti 96.6 0.034 7.3E-07 61.4 13.9 75 199-273 96-194 (428)
439 COG4619 ABC-type uncharacteriz 96.6 0.0087 1.9E-07 57.4 7.9 22 203-224 30-51 (223)
440 cd03228 ABCC_MRP_Like The MRP 96.6 0.0065 1.4E-07 58.3 7.3 26 201-226 27-52 (171)
441 PF13238 AAA_18: AAA domain; P 96.5 0.0018 3.9E-08 58.0 3.2 22 205-226 1-22 (129)
442 PRK14737 gmk guanylate kinase; 96.5 0.0041 8.9E-08 60.9 5.9 26 201-226 3-28 (186)
443 TIGR02239 recomb_RAD51 DNA rep 96.5 0.0078 1.7E-07 63.9 8.4 110 200-309 94-242 (316)
444 cd03238 ABC_UvrA The excision 96.5 0.017 3.8E-07 56.0 10.2 24 202-225 21-44 (176)
445 PRK00889 adenylylsulfate kinas 96.5 0.01 2.2E-07 57.0 8.5 38 201-238 3-43 (175)
446 COG1066 Sms Predicted ATP-depe 96.5 0.017 3.6E-07 62.5 10.6 143 203-349 94-257 (456)
447 PRK01184 hypothetical protein; 96.5 0.0022 4.8E-08 62.1 3.7 29 204-233 3-31 (184)
448 TIGR02525 plasmid_TraJ plasmid 96.5 0.0039 8.5E-08 67.5 5.9 68 204-271 151-235 (372)
449 TIGR02533 type_II_gspE general 96.5 0.0068 1.5E-07 68.0 8.0 95 164-272 217-322 (486)
450 PRK05541 adenylylsulfate kinas 96.5 0.0032 6.9E-08 60.6 4.6 28 200-227 5-32 (176)
451 COG4178 ABC-type uncharacteriz 96.5 0.0065 1.4E-07 69.0 7.5 26 199-224 416-441 (604)
452 PRK08099 bifunctional DNA-bind 96.4 0.0062 1.3E-07 66.7 7.1 38 201-238 218-255 (399)
453 PF13521 AAA_28: AAA domain; P 96.4 0.0024 5.2E-08 60.7 3.5 33 205-238 2-34 (163)
454 KOG0479 DNA replication licens 96.4 0.011 2.4E-07 65.9 8.9 160 170-343 302-493 (818)
455 cd03246 ABCC_Protease_Secretio 96.4 0.027 5.9E-07 54.1 10.7 24 203-226 29-52 (173)
456 TIGR02768 TraA_Ti Ti-type conj 96.4 0.0076 1.7E-07 71.1 8.2 97 203-311 369-477 (744)
457 TIGR00150 HI0065_YjeE ATPase, 96.4 0.0058 1.3E-07 56.6 5.7 27 203-229 23-49 (133)
458 PRK04182 cytidylate kinase; Pr 96.4 0.0029 6.2E-08 60.6 3.8 29 204-232 2-30 (180)
459 PLN03186 DNA repair protein RA 96.4 0.0075 1.6E-07 64.7 7.3 110 201-310 122-270 (342)
460 PLN02674 adenylate kinase 96.4 0.0033 7.1E-08 64.2 4.3 40 200-241 29-68 (244)
461 TIGR00767 rho transcription te 96.4 0.0087 1.9E-07 65.1 7.7 25 203-227 169-193 (415)
462 cd03230 ABC_DR_subfamily_A Thi 96.4 0.013 2.9E-07 56.3 8.3 24 203-226 27-50 (173)
463 COG5271 MDN1 AAA ATPase contai 96.4 0.0089 1.9E-07 73.1 8.2 135 204-349 890-1048(4600)
464 cd03243 ABC_MutS_homologs The 96.4 0.014 3E-07 57.7 8.5 22 203-224 30-51 (202)
465 PF08433 KTI12: Chromatin asso 96.4 0.024 5.1E-07 58.9 10.4 68 205-273 4-82 (270)
466 TIGR02173 cyt_kin_arch cytidyl 96.3 0.0034 7.3E-08 59.6 3.8 29 204-232 2-30 (171)
467 PRK09302 circadian clock prote 96.3 0.02 4.3E-07 64.8 10.5 76 200-275 271-377 (509)
468 cd03280 ABC_MutS2 MutS2 homolo 96.3 0.029 6.2E-07 55.4 10.4 21 203-223 29-49 (200)
469 cd03214 ABC_Iron-Siderophores_ 96.3 0.019 4.2E-07 55.5 9.0 26 201-226 24-49 (180)
470 TIGR00152 dephospho-CoA kinase 96.3 0.019 4E-07 56.0 8.7 36 205-242 2-37 (188)
471 PRK09302 circadian clock prote 96.3 0.025 5.5E-07 63.9 11.0 38 200-237 29-70 (509)
472 COG1126 GlnQ ABC-type polar am 96.2 0.027 5.8E-07 56.2 9.5 22 203-224 29-50 (240)
473 COG3842 PotA ABC-type spermidi 96.2 0.0087 1.9E-07 64.1 6.6 25 200-224 27-53 (352)
474 COG1136 SalX ABC-type antimicr 96.2 0.031 6.6E-07 56.4 10.0 21 204-224 33-53 (226)
475 cd03227 ABC_Class2 ABC-type Cl 96.2 0.015 3.2E-07 55.4 7.5 23 202-224 21-43 (162)
476 PRK14526 adenylate kinase; Pro 96.2 0.0045 9.8E-08 61.9 3.9 34 204-239 2-35 (211)
477 cd03282 ABC_MSH4_euk MutS4 hom 96.2 0.043 9.3E-07 54.6 10.8 22 203-224 30-51 (204)
478 PRK12727 flagellar biosynthesi 96.2 0.016 3.6E-07 65.0 8.5 26 201-226 349-374 (559)
479 PLN02459 probable adenylate ki 96.1 0.0058 1.2E-07 62.9 4.6 36 203-240 30-65 (261)
480 COG1121 ZnuC ABC-type Mn/Zn tr 96.1 0.019 4.1E-07 58.8 8.2 55 250-314 146-200 (254)
481 PRK04132 replication factor C 96.1 0.0033 7.2E-08 74.4 3.2 50 157-218 7-56 (846)
482 PF08423 Rad51: Rad51; InterP 96.1 0.019 4.2E-07 59.1 8.4 106 206-311 42-186 (256)
483 PF13479 AAA_24: AAA domain 96.1 0.0063 1.4E-07 60.8 4.7 68 202-273 3-80 (213)
484 COG2804 PulE Type II secretory 96.1 0.014 3.1E-07 64.6 7.8 96 164-273 233-339 (500)
485 TIGR01613 primase_Cterm phage/ 96.1 0.041 8.8E-07 58.0 11.0 142 169-333 48-202 (304)
486 cd03247 ABCC_cytochrome_bd The 96.1 0.051 1.1E-06 52.4 10.8 26 201-226 27-52 (178)
487 PLN02199 shikimate kinase 96.1 0.01 2.2E-07 62.0 6.3 32 203-234 103-134 (303)
488 cd00561 CobA_CobO_BtuR ATP:cor 96.1 0.02 4.2E-07 54.8 7.7 23 204-226 4-26 (159)
489 cd03223 ABCD_peroxisomal_ALDP 96.1 0.027 5.9E-07 53.9 8.8 26 201-226 26-51 (166)
490 PF01583 APS_kinase: Adenylyls 96.1 0.018 3.8E-07 54.9 7.4 40 202-241 2-44 (156)
491 PRK12726 flagellar biosynthesi 96.1 0.042 9.1E-07 59.5 11.0 61 175-238 181-245 (407)
492 PF13086 AAA_11: AAA domain; P 96.1 0.0041 8.9E-08 61.4 3.2 22 205-226 20-41 (236)
493 cd03229 ABC_Class3 This class 96.1 0.017 3.7E-07 55.8 7.3 24 203-226 27-50 (178)
494 PF05970 PIF1: PIF1-like helic 96.1 0.022 4.7E-07 61.7 8.7 27 200-226 20-46 (364)
495 PRK12338 hypothetical protein; 96.0 0.0062 1.3E-07 64.5 4.3 31 201-231 3-33 (319)
496 CHL00195 ycf46 Ycf46; Provisio 96.0 0.17 3.7E-06 57.0 15.8 122 261-400 81-203 (489)
497 TIGR00455 apsK adenylylsulfate 96.0 0.029 6.3E-07 54.4 8.7 40 200-239 16-58 (184)
498 PRK13889 conjugal transfer rel 96.0 0.026 5.6E-07 68.1 9.8 99 204-314 364-474 (988)
499 PRK10078 ribose 1,5-bisphospho 96.0 0.0063 1.4E-07 59.3 3.9 29 203-231 3-31 (186)
500 PRK05480 uridine/cytidine kina 96.0 0.009 1.9E-07 59.2 5.0 38 201-238 5-43 (209)
No 1
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-125 Score=993.03 Aligned_cols=511 Identities=65% Similarity=0.981 Sum_probs=471.5
Q ss_pred CCCCCCCceEEEeCCcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCcccccccccC
Q 007190 82 GVSEKQPLHVVMVDPKVSNKSRFAQELISTILFTVAVGLVWLMGAAALQKYIGSLGGIGTSGVGSSSSYAPKELNKEVMP 161 (613)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (613)
+.+.+.|+|++++++..++...+...++.++. +.+++++|+++...+.+..+. ++++....+ +..++.|
T Consensus 227 ~es~k~p~~~~~~e~~~s~~~~~~~~~~k~i~-~~i~~~~~~~G~~~~~~~~~l-~~i~~~~~g---------l~~ev~p 295 (752)
T KOG0734|consen 227 PESHKDPFHVGFVEGFLSNRTTKAGRLVKTIR-TTIVGYLLLLGIYALLENTGL-SGIFRSTTG---------LDSEVDP 295 (752)
T ss_pred chhccCceeeeeeccccccccchHHHHHHHHH-HHHHHHHHHHHHHHHhhcccc-ccccccccc---------cccccCh
Confidence 34667999999999877777777777777777 566778888888777766543 233322222 3345666
Q ss_pred CCC-CCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhh
Q 007190 162 EKN-VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 240 (613)
Q Consensus 162 ~~~-~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~ 240 (613)
+.. .++|+||.|+|++|++|.|+|+||++|.+|.++|++.|+||||+||||||||+||||+|+|+++|||+.++++|.+
T Consensus 296 ~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdE 375 (752)
T KOG0734|consen 296 EQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDE 375 (752)
T ss_pred hhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhh
Confidence 544 6789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCc-ccHHHHHHHHHHhhccccCCceEEEeecCCCCCCChh
Q 007190 241 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG-HTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPA 319 (613)
Q Consensus 241 ~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~-~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~a 319 (613)
+|+|++++++|++|..|++++||||||||||++|++|...+. +.++++||||.+||||.++.+||||+|||+|+.||+|
T Consensus 376 m~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~A 455 (752)
T KOG0734|consen 376 MFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKA 455 (752)
T ss_pred hhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHH
Confidence 999999999999999999999999999999999999987765 7799999999999999999999999999999999999
Q ss_pred hcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 007190 320 LTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELE 399 (613)
Q Consensus 320 LlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~ 399 (613)
|.||||||++|.+|.||.++|.+||+.|+.+..++.++|+..||+.|+||+|+||+|++|+|++.|+.++...+|+.|++
T Consensus 456 L~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM~~LE 535 (752)
T KOG0734|consen 456 LTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMVTMKHLE 535 (752)
T ss_pred hcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcccccHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCccccccchhhhHHHHHHHHhhhHHHHHhcCCCCCeEEEEEeecCCccceEEeccCCCcccccHHHHHHhh
Q 007190 400 FAKDRILMGTERKTMFISEESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPRGSALGMVTQLPSSDETSVSQKQLLARL 479 (613)
Q Consensus 400 ~A~~~v~~g~~~~~~~~~~~~~~~~A~hEaGhAlva~~~~~~~~v~~vti~prg~~~G~~~~~~~~~~~~~t~~~~~~~i 479 (613)
+|.||++||.++++..++++.++++||||+||||||.++.++.|+||+||+|||.+||+|.++|+.|++.+||.|+++++
T Consensus 536 ~akDrIlMG~ERks~~i~~eak~~TAyHE~GHAivA~yTk~A~PlhKaTImPRG~sLG~t~~LPe~D~~~~Tk~q~LA~l 615 (752)
T KOG0734|consen 536 FAKDRILMGPERKSMVIDEEAKKITAYHEGGHAIVALYTKGAMPLHKATIMPRGPSLGHTSQLPEKDRYSITKAQLLARL 615 (752)
T ss_pred hhhhheeecccccccccChhhhhhhhhhccCceEEEeecCCCccccceeeccCCccccceeecCccchhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccHHHHHHHHhCCCCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCcccccC-----CCChhhHHHHHHHHHHHHHHH
Q 007190 480 DVCMGGRVAEELIFGRDHITTGASSDLHSATELAHYMVSNCGMSDAIGPVHIKD-----RPSSEMQSRIDAEVVKLLREA 554 (613)
Q Consensus 480 ~~~l~GraAE~~~~g~~~~~~ga~~Dl~~at~~a~~mv~~~Gm~~~~g~~~~~~-----~~~~~~~~~id~ev~~~l~~~ 554 (613)
+||||||+|||++||.+++||||+|||++||++|++||+.||||+++|++.+.. .++..++..||.||+++|+++
T Consensus 616 DV~MGGRvAEELIfG~D~iTsGAssDl~qAT~lA~~MVt~fGMSd~vG~v~~~~~~~~~s~~~~t~~lidaEi~~lL~~s 695 (752)
T KOG0734|consen 616 DVCMGGRVAEELIFGTDKITSGASSDLDQATKLARRMVTKFGMSDKVGPVTLSAEDNSSSLSPRTQELIDAEIKRLLRDS 695 (752)
T ss_pred HHhhcchHHHHHhccCCcccccccchHHHHHHHHHHHHHHcCccccccceeeeccCCCCCCCchhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999997753 245667888999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHhhccCcCCCCCchh
Q 007190 555 YDRVKALLKKHEKQLHALANALLEYETLSAEEIKRILLPYREGQLPEQQ 603 (613)
Q Consensus 555 ~~~a~~iL~~~r~~l~~la~~Lle~etL~~~ei~~i~~~~~~~~~~~~~ 603 (613)
|+||+.||+.|.+.+++||++||++||||++||++++..........++
T Consensus 696 YeRak~iL~~h~kEl~~LA~ALleYETL~A~eik~vl~g~~~~~k~~~~ 744 (752)
T KOG0734|consen 696 YERAKSILKTHKKELHALAEALLEYETLDAKEIKRVLKGKSDELKTNQE 744 (752)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhccchhhhcccc
Confidence 9999999999999999999999999999999999999866443333333
No 2
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-104 Score=868.26 Aligned_cols=481 Identities=55% Similarity=0.851 Sum_probs=444.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccCCCHHHHHHHH
Q 007190 103 RFAQELISTILFTVAVGLVWLMGAAALQKYIGSLGGIGTSGVGSSSSYAPKELNKEVMPEKNVKTFKDVKGCDDAKQELV 182 (613)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~dV~G~~e~k~~L~ 182 (613)
.|+..+.+++++.++++++|++.++..+ .++|.+..+++++.+ +...+.+..++|+||+|++++|+++.
T Consensus 95 ~~~~~~~~~lp~il~~~~~~~~~~r~~~----~g~g~~~~~~gkska-------k~~~~~~~~v~F~DVAG~dEakeel~ 163 (596)
T COG0465 95 LLASLLSTWLPFILLIGLGWFFFRRQAQ----GGGGGGAFSFGKSKA-------KLYLEDQVKVTFADVAGVDEAKEELS 163 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh----cCCCCcccCCChHHH-------HHhcccccCcChhhhcCcHHHHHHHH
Confidence 4555566777777777777777665432 112222344444432 23344567789999999999999999
Q ss_pred HHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhhhhhhhHHHHHHHHHHHHcCCC
Q 007190 183 EVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAP 262 (613)
Q Consensus 183 eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~~~g~~~~~vr~lf~~A~~~~P 262 (613)
|+|++|++|.+|..+|++.|+|+||+||||||||+||||+|+|+++||+++|+|+|+++|+|.+++++|++|.+|++++|
T Consensus 164 EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~aP 243 (596)
T COG0465 164 ELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAP 243 (596)
T ss_pred HHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCCccccCCccC----CcccHHHHHHHHHHhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHh
Q 007190 263 CIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVR 338 (613)
Q Consensus 263 ~ILfIDEiD~l~~~r~~~----~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~ 338 (613)
|||||||||+++..|+.. ..+.++++||||.+||||..+.+|+||++||+|+.|||||+||||||++|.++.||..
T Consensus 244 ~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~ 323 (596)
T COG0465 244 CIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIK 323 (596)
T ss_pred CeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchh
Confidence 999999999999999643 3345789999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcCCccccccchh
Q 007190 339 GRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRILMGTERKTMFISE 418 (613)
Q Consensus 339 ~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A~~~v~~g~~~~~~~~~~ 418 (613)
+|.+|++.|+++.++.+++|+..+|+.|+||+|+|+.|++|+|++.|++++...|++.|+++|++++++|.++++..+++
T Consensus 324 gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G~erks~vise 403 (596)
T COG0465 324 GREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIAGPERKSRVISE 403 (596)
T ss_pred hHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHHHhcCcCcCCcccCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhhHHHHHhcCCCCCeEEEEEeecCCccceEEeccCCCcccccHHHHHHhhHHHccHHHHHHHHhCCCCC
Q 007190 419 ESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPRGSALGMVTQLPSSDETSVSQKQLLARLDVCMGGRVAEELIFGRDHI 498 (613)
Q Consensus 419 ~~~~~~A~hEaGhAlva~~~~~~~~v~~vti~prg~~~G~~~~~~~~~~~~~t~~~~~~~i~~~l~GraAE~~~~g~~~~ 498 (613)
.+++.+||||+|||++++++++++|+||+||+|||.++||+++.|.+|++++|+.+++++|+++||||||||++||. ++
T Consensus 404 ~ek~~~AYhEaghalv~~~l~~~d~v~KvtIiPrG~alG~t~~~Pe~d~~l~sk~~l~~~i~~~lgGRaAEel~~g~-e~ 482 (596)
T COG0465 404 AEKKITAYHEAGHALVGLLLPDADPVHKVTIIPRGRALGYTLFLPEEDKYLMSKEELLDRIDVLLGGRAAEELIFGY-EI 482 (596)
T ss_pred hhhcchHHHHHHHHHHHHhCCCCcccceeeeccCchhhcchhcCCccccccccHHHHHHHHHHHhCCcHhhhhhhcc-cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998 89
Q ss_pred CCCcchHHHHHHHHHHHHHHhcCCCCCCCcccccC-------------CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007190 499 TTGASSDLHSATELAHYMVSNCGMSDAIGPVHIKD-------------RPSSEMQSRIDAEVVKLLREAYDRVKALLKKH 565 (613)
Q Consensus 499 ~~ga~~Dl~~at~~a~~mv~~~Gm~~~~g~~~~~~-------------~~~~~~~~~id~ev~~~l~~~~~~a~~iL~~~ 565 (613)
||||++|+++||++|+.||++|||++.+|++.+.. ..|++++..||.||+++++++|+++++||.+|
T Consensus 483 ttGa~~D~~~at~~ar~mVt~~Gms~~lG~v~~~~~~~~flg~~~~~~~~Se~ta~~ID~evk~ii~~~y~~a~~il~~~ 562 (596)
T COG0465 483 TTGASNDLEKATDLARAMVTEYGMSAKLGPVAYEQVEGVFLGRYQKAKNYSEETAQEIDREVKDIIDEAYERAKELLNEN 562 (596)
T ss_pred cccchhhHHHHHHHHHHhhhhcCcchhhCceehhhcccccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998864 26888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccCHHHHHHhhccCc
Q 007190 566 EKQLHALANALLEYETLSAEEIKRILLPYR 595 (613)
Q Consensus 566 r~~l~~la~~Lle~etL~~~ei~~i~~~~~ 595 (613)
++.++.+++.|+|+|||++++|+.|+....
T Consensus 563 ~~~l~~~~~~Lle~Eti~~~~i~~i~~~~~ 592 (596)
T COG0465 563 KDALETLAEMLLEKETIDAEEIKDILAGRK 592 (596)
T ss_pred HHHHHHHHHHHHHhhccCHHHHHHHHhccc
Confidence 999999999999999999999999998653
No 3
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-98 Score=832.31 Aligned_cols=436 Identities=53% Similarity=0.830 Sum_probs=417.5
Q ss_pred CCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhh
Q 007190 161 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 240 (613)
Q Consensus 161 ~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~ 240 (613)
+.++.++|+||+|++++|++|.|+|.||+||++|.++|.++|+|+||+||||||||+||||+|+|+|+||+.+++|+|++
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE 382 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE 382 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHH
Confidence 45566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCc-----cCCcccHHHHHHHHHHhhccccCCceEEEeecCCCCC
Q 007190 241 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRK-----QWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 315 (613)
Q Consensus 241 ~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~-----~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~ 315 (613)
+++|.++.+++++|..|+.++||||||||||+++..|+ ..+.+.++++||||.+||||..+.+|||+++||+|+.
T Consensus 383 ~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ 462 (774)
T KOG0731|consen 383 MFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDI 462 (774)
T ss_pred HhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccc
Confidence 99999999999999999999999999999999999984 2244568999999999999999999999999999999
Q ss_pred CChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccC
Q 007190 316 LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLT 394 (613)
Q Consensus 316 Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It 394 (613)
||+||+||||||++|.+++||..+|.+|++.|+++..+. +++|+..+|.+|+||+|+||.|+||+|++.|++++...|+
T Consensus 463 ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~ 542 (774)
T KOG0731|consen 463 LDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREIG 542 (774)
T ss_pred cCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccc
Confidence 999999999999999999999999999999999999885 8888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCccccccchhhhHHHHHHHHhhhHHHHHhcCCCCCeEEEEEeecCCccceEEeccCCCcccccHHH
Q 007190 395 ATELEFAKDRILMGTERKTMFISEESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPRGSALGMVTQLPSSDETSVSQKQ 474 (613)
Q Consensus 395 ~~dl~~A~~~v~~g~~~~~~~~~~~~~~~~A~hEaGhAlva~~~~~~~~v~~vti~prg~~~G~~~~~~~~~~~~~t~~~ 474 (613)
..|+++|++|++.|.+.++..++.++++.+||||||||+++|++++.+|+.|++|+| |+++||+++.|.++ +++|++|
T Consensus 543 ~~~~~~a~~Rvi~G~~~~~~~~~~~~~~~~a~~eagha~~g~~l~~~dpl~kvsIiP-GqalG~a~~~P~~~-~l~sk~q 620 (774)
T KOG0731|consen 543 TKDLEYAIERVIAGMEKKSRVLSLEEKKTVAYHEAGHAVVGWLLEHADPLLKVSIIP-GQALGYAQYLPTDD-YLLSKEQ 620 (774)
T ss_pred hhhHHHHHHHHhccccccchhcCHhhhhhhhhhhccchhhhccccccCcceeEEecc-CCccceEEECCccc-ccccHHH
Confidence 999999999999999999999999999999999999999999999999999999999 66999999999877 8999999
Q ss_pred HHHhhHHHccHHHHHHHHhCCCCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCcccccC----------CCChhhHHHHH
Q 007190 475 LLARLDVCMGGRVAEELIFGRDHITTGASSDLHSATELAHYMVSNCGMSDAIGPVHIKD----------RPSSEMQSRID 544 (613)
Q Consensus 475 ~~~~i~~~l~GraAE~~~~g~~~~~~ga~~Dl~~at~~a~~mv~~~Gm~~~~g~~~~~~----------~~~~~~~~~id 544 (613)
|+++|++.||||||||++|| +++||||++||++||++|+.||++|||++++|++++.. .++..+.+.||
T Consensus 621 l~~rm~m~LGGRaAEev~fg-~~iTtga~ddl~kvT~~A~~~V~~~Gms~kig~~~~~~~~~~~~~~~~p~s~~~~~~Id 699 (774)
T KOG0731|consen 621 LFDRMVMALGGRAAEEVVFG-SEITTGAQDDLEKVTKIARAMVASFGMSEKIGPISFQMLLPGDESFRKPYSEKTAQLID 699 (774)
T ss_pred HHHHHHHHhCcchhhheecC-CccCchhhccHHHHHHHHHHHHHHcCcccccCceeccCcccccccccCccchhHHHHHH
Confidence 99999999999999999999 68999999999999999999999999999999998642 34677899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHhhccCcCCCC
Q 007190 545 AEVVKLLREAYDRVKALLKKHEKQLHALANALLEYETLSAEEIKRILLPYREGQL 599 (613)
Q Consensus 545 ~ev~~~l~~~~~~a~~iL~~~r~~l~~la~~Lle~etL~~~ei~~i~~~~~~~~~ 599 (613)
.||+++++.||++|.++|++|++.++.||+.|||+|+|+++|+.+++.+++.+..
T Consensus 700 ~ev~~lv~~ay~~~~~ll~~n~~~l~~ia~~LLeke~l~~ee~~~ll~~~~~~~~ 754 (774)
T KOG0731|consen 700 TEVRRLVQKAYERTKELLRTNRDKLDKIAEVLLEKEVLTGEEIIALLGERPPGMP 754 (774)
T ss_pred HHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHhhhccHHHHHHHhccCCCccc
Confidence 9999999999999999999999999999999999999999999999999887773
No 4
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=2.4e-89 Score=772.81 Aligned_cols=434 Identities=49% Similarity=0.783 Sum_probs=409.2
Q ss_pred CCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhh
Q 007190 161 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 240 (613)
Q Consensus 161 ~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~ 240 (613)
+....++|+||+|++++|+++.+++.++++|+.|..+|.++|+|+||+||||||||++|+++|+++++||+++++++|.+
T Consensus 175 ~~~~~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~ 254 (638)
T CHL00176 175 EADTGITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVE 254 (638)
T ss_pred ccCCCCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHH
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccC----CcccHHHHHHHHHHhhccccCCceEEEeecCCCCCC
Q 007190 241 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 316 (613)
Q Consensus 241 ~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~----~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~L 316 (613)
.+.|.+..+++.+|..|+..+||||||||||.++..|+.. .....+++++||.+||++..+.+++||++||+|+.+
T Consensus 255 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~L 334 (638)
T CHL00176 255 MFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDIL 334 (638)
T ss_pred HhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhh
Confidence 9999999999999999999999999999999998776532 233468899999999999988999999999999999
Q ss_pred ChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Q 007190 317 DPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTAT 396 (613)
Q Consensus 317 d~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~ 396 (613)
|++++||||||++|.+++|+.++|.+||+.|+++..+.+++++..+|+.|+||||+||+++|++|++.|++++...||.+
T Consensus 335 D~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~ 414 (638)
T CHL00176 335 DAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMK 414 (638)
T ss_pred hhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHH
Confidence 99999999999999999999999999999999998888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCccccccchhhhHHHHHHHHhhhHHHHHhcCCCCCeEEEEEeecCCccceEEeccCCCcccccHHHHH
Q 007190 397 ELEFAKDRILMGTERKTMFISEESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPRGSALGMVTQLPSSDETSVSQKQLL 476 (613)
Q Consensus 397 dl~~A~~~v~~g~~~~~~~~~~~~~~~~A~hEaGhAlva~~~~~~~~v~~vti~prg~~~G~~~~~~~~~~~~~t~~~~~ 476 (613)
|++.|+++++.|.++++ ..++++++++||||+||||+++++++.+||+||||+|||+++||+++.|.+++..+||.+++
T Consensus 415 dl~~Ai~rv~~g~~~~~-~~~~~~~~~vA~hEaGhA~v~~~l~~~~~v~kvtI~prg~~~G~~~~~p~~~~~~~t~~~l~ 493 (638)
T CHL00176 415 EIDTAIDRVIAGLEGTP-LEDSKNKRLIAYHEVGHAIVGTLLPNHDPVQKVTLIPRGQAKGLTWFTPEEDQSLVSRSQIL 493 (638)
T ss_pred HHHHHHHHHHhhhccCc-cccHHHHHHHHHHhhhhHHHHhhccCCCceEEEEEeecCCCCCceEecCCcccccccHHHHH
Confidence 99999999999988765 56788999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHccHHHHHHHHhCCCCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCcccccC----------------CCChhhH
Q 007190 477 ARLDVCMGGRVAEELIFGRDHITTGASSDLHSATELAHYMVSNCGMSDAIGPVHIKD----------------RPSSEMQ 540 (613)
Q Consensus 477 ~~i~~~l~GraAE~~~~g~~~~~~ga~~Dl~~at~~a~~mv~~~Gm~~~~g~~~~~~----------------~~~~~~~ 540 (613)
++|++||||||||+++||++++|+||++||++||++|+.||++||||+ +|++++.. ..|++++
T Consensus 494 ~~i~~~LgGraAE~~~fg~~~~~~Ga~~Dl~~AT~iA~~mv~~~Gm~~-~g~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 572 (638)
T CHL00176 494 ARIVGALGGRAAEEVVFGSTEVTTGASNDLQQVTNLARQMVTRFGMSS-IGPISLESNNSTDPFLGRFMQRNSEYSEEIA 572 (638)
T ss_pred HHHHHHhhhHHHHHHhcCCCCcCCCchhHHHHHHHHHHHHHHHhCCCc-CCceeecCCCCcccccccccccccCcCHHHH
Confidence 999999999999999999888999999999999999999999999995 99987642 1467889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHhhccCcC
Q 007190 541 SRIDAEVVKLLREAYDRVKALLKKHEKQLHALANALLEYETLSAEEIKRILLPYRE 596 (613)
Q Consensus 541 ~~id~ev~~~l~~~~~~a~~iL~~~r~~l~~la~~Lle~etL~~~ei~~i~~~~~~ 596 (613)
..||.||+++|++||++|++||++||+.|++||++|+|+|||+++||++|+..+..
T Consensus 573 ~~iD~ev~~~l~~~~~~a~~iL~~~~~~l~~la~~Lle~Etl~~~ei~~il~~~~~ 628 (638)
T CHL00176 573 DKIDMEVRSILHTCYQYAYQILKDNRVLIDLLVELLLQKETIDGDEFREIVNSYTI 628 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999987643
No 5
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=5.9e-87 Score=760.22 Aligned_cols=435 Identities=54% Similarity=0.881 Sum_probs=412.5
Q ss_pred cCCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhh
Q 007190 160 MPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 239 (613)
Q Consensus 160 ~~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~ 239 (613)
.+.....+|+|+.|.+.+++++.+++.+++++..|..++.+.|+|+||+||||||||++++++|+++++||+.++++++.
T Consensus 143 ~~~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~ 222 (644)
T PRK10733 143 TEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 222 (644)
T ss_pred CchhhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhH
Confidence 34445678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccC----CcccHHHHHHHHHHhhccccCCceEEEeecCCCCC
Q 007190 240 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 315 (613)
Q Consensus 240 ~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~----~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~ 315 (613)
+.|.|.+...++.+|..++..+||||||||+|.++.+|+.. .....+++++||.+||++..+.+++||+|||+|+.
T Consensus 223 ~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~ 302 (644)
T PRK10733 223 EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDV 302 (644)
T ss_pred HhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhh
Confidence 99999999999999999999999999999999999877542 22346799999999999999999999999999999
Q ss_pred CChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Q 007190 316 LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTA 395 (613)
Q Consensus 316 Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~ 395 (613)
||++++||||||++|.|++|+.++|.+||+.|+++.++..++++..+++.|+||||+||.++|++|+..|+++++..|+.
T Consensus 303 lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~ 382 (644)
T PRK10733 303 LDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSM 382 (644)
T ss_pred cCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccH
Confidence 99999999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCccccccchhhhHHHHHHHHhhhHHHHHhcCCCCCeEEEEEeecCCccceEEeccCCCcccccHHHH
Q 007190 396 TELEFAKDRILMGTERKTMFISEESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPRGSALGMVTQLPSSDETSVSQKQL 475 (613)
Q Consensus 396 ~dl~~A~~~v~~g~~~~~~~~~~~~~~~~A~hEaGhAlva~~~~~~~~v~~vti~prg~~~G~~~~~~~~~~~~~t~~~~ 475 (613)
.|++.|++++.+|.++++..+++++++++||||+||||++++++..+|+++|||+|||.++||+++.|.++....||.++
T Consensus 383 ~d~~~a~~~v~~g~~~~~~~~~~~~~~~~a~he~gha~~~~~~~~~~~~~~v~i~prg~~~g~~~~~~~~~~~~~~~~~l 462 (644)
T PRK10733 383 VEFEKAKDKIMMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLPEGDAISASRQKL 462 (644)
T ss_pred HHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHHHHccCCCceeEEEEeccCCCcceeEECCCcccccccHHHH
Confidence 99999999999999888778899999999999999999999999999999999999999999999999999888999999
Q ss_pred HHhhHHHccHHHHHHHHhCCCCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCcccccC---------------CCChhhH
Q 007190 476 LARLDVCMGGRVAEELIFGRDHITTGASSDLHSATELAHYMVSNCGMSDAIGPVHIKD---------------RPSSEMQ 540 (613)
Q Consensus 476 ~~~i~~~l~GraAE~~~~g~~~~~~ga~~Dl~~at~~a~~mv~~~Gm~~~~g~~~~~~---------------~~~~~~~ 540 (613)
+++|+++|||||||+++||++++||||+|||++||+||+.||++||||+++|++.+.. ..|+++.
T Consensus 463 ~~~i~~~lgGraAE~~~~g~~~~ttGa~~Dl~~AT~lA~~mv~~~Gms~~lg~~~~~~~~~~~~lg~~~~~~~~~s~~~~ 542 (644)
T PRK10733 463 ESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNLARNMVTQWGFSEKLGPLLYAEEEGEVFLGRSVAKAKHMSDETA 542 (644)
T ss_pred HHHHHHHHhhHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhCCCccccchhhcccccccccccccccccccCHHHH
Confidence 9999999999999999999888999999999999999999999999999999987642 2477899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHhhccC
Q 007190 541 SRIDAEVVKLLREAYDRVKALLKKHEKQLHALANALLEYETLSAEEIKRILLPY 594 (613)
Q Consensus 541 ~~id~ev~~~l~~~~~~a~~iL~~~r~~l~~la~~Lle~etL~~~ei~~i~~~~ 594 (613)
..||.||+++|++||++|++||++||+.|++||++|+|+|||+++||++|+..+
T Consensus 543 ~~id~ev~~il~~~~~~a~~iL~~~~~~l~~la~~Lle~etl~~~ei~~i~~~~ 596 (644)
T PRK10733 543 RIIDQEVKALIERNYNRARQLLTDNMDILHAMKDALMKYETIDAPQIDDLMARR 596 (644)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhceeCHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999865
No 6
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=5.9e-84 Score=718.38 Aligned_cols=432 Identities=57% Similarity=0.901 Sum_probs=407.1
Q ss_pred ccCCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchh
Q 007190 159 VMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 238 (613)
Q Consensus 159 ~~~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~ 238 (613)
..++.+.++|+||+|++++|+++++++.++++|+.|.+.|.++|+|+|||||||||||++|+++|+++++||+.++++++
T Consensus 45 ~~~~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~ 124 (495)
T TIGR01241 45 LNEEKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDF 124 (495)
T ss_pred ccCCCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHH
Confidence 44556788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccC----CcccHHHHHHHHHHhhccccCCceEEEeecCCCC
Q 007190 239 EEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD 314 (613)
Q Consensus 239 ~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~----~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~ 314 (613)
.+.+.|.+.+.++.+|..|+..+||||||||||.++.+++.. .....+++++||.+||++..+.+++||+|||+|+
T Consensus 125 ~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~ 204 (495)
T TIGR01241 125 VEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPD 204 (495)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChh
Confidence 999999999999999999999999999999999998877542 2234688999999999999889999999999999
Q ss_pred CCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccC
Q 007190 315 ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLT 394 (613)
Q Consensus 315 ~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It 394 (613)
.||++++||||||+.|++++|+.++|.+||+.++++.+...+.++..++..|.||||+||.++|++|+..|.++++..|+
T Consensus 205 ~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~ 284 (495)
T TIGR01241 205 VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEIT 284 (495)
T ss_pred hcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999999999999999999999888778889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCccccccchhhhHHHHHHHHhhhHHHHHhcCCCCCeEEEEEeecCCccceEEeccCCCcccccHHH
Q 007190 395 ATELEFAKDRILMGTERKTMFISEESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPRGSALGMVTQLPSSDETSVSQKQ 474 (613)
Q Consensus 395 ~~dl~~A~~~v~~g~~~~~~~~~~~~~~~~A~hEaGhAlva~~~~~~~~v~~vti~prg~~~G~~~~~~~~~~~~~t~~~ 474 (613)
.+|++.|++++..|.+.+...+++++++++|+||+||||++++++...|++++||.|||.++||+.+.|.++....|+.+
T Consensus 285 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A~hEaGhAlv~~~l~~~~~v~~vsi~prg~~~G~~~~~~~~~~~~~t~~~ 364 (495)
T TIGR01241 285 MNDIEEAIDRVIAGPEKKSRVISEKEKKLVAYHEAGHALVGLLLKDADPVHKVTIIPRGQALGYTQFLPEEDKYLYTKSQ 364 (495)
T ss_pred HHHHHHHHHHHhcccccccccccHHHHHHHHHHHHhHHHHHHhcCCCCceEEEEEeecCCccceEEecCccccccCCHHH
Confidence 99999999999999887777789999999999999999999999988999999999999999999999988788999999
Q ss_pred HHHhhHHHccHHHHHHHHhCCCCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCcccccC---------------CCChhh
Q 007190 475 LLARLDVCMGGRVAEELIFGRDHITTGASSDLHSATELAHYMVSNCGMSDAIGPVHIKD---------------RPSSEM 539 (613)
Q Consensus 475 ~~~~i~~~l~GraAE~~~~g~~~~~~ga~~Dl~~at~~a~~mv~~~Gm~~~~g~~~~~~---------------~~~~~~ 539 (613)
++++|+++|||||||+++|| ++|+|+++||++||++|+.||.+||||+++|++.+.. ..++.+
T Consensus 365 l~~~i~v~LaGraAE~~~~G--~~s~Ga~~Dl~~At~lA~~mv~~~Gm~~~~g~~~~~~~~~~~~l~~~~~~~~~~s~~~ 442 (495)
T TIGR01241 365 LLAQIAVLLGGRAAEEIIFG--EVTTGASNDIKQATNIARAMVTEWGMSDKLGPVAYGSDGGDVFLGRGFAKAKEYSEET 442 (495)
T ss_pred HHHHHHHHhhHHHHHHHHhc--CCCCCchHHHHHHHHHHHHHHHHhCCCcccCceeeccCccccccccccccccccCHHH
Confidence 99999999999999999999 4899999999999999999999999999999887643 246678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHhhc
Q 007190 540 QSRIDAEVVKLLREAYDRVKALLKKHEKQLHALANALLEYETLSAEEIKRILL 592 (613)
Q Consensus 540 ~~~id~ev~~~l~~~~~~a~~iL~~~r~~l~~la~~Lle~etL~~~ei~~i~~ 592 (613)
...+|.+|+++|+++|++|++||++||+.|++||++|+++|+|+++||++|+.
T Consensus 443 ~~~id~~v~~lL~~a~~ra~~lL~~~~~~l~~la~~Ll~~e~L~~~ei~~il~ 495 (495)
T TIGR01241 443 AREIDEEVKRIIEEAYKRAKQILTENRDELELLAKALLEKETITREEIKELLA 495 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCeeCHHHHHHHhC
Confidence 88999999999999999999999999999999999999999999999999974
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-59 Score=475.61 Aligned_cols=251 Identities=46% Similarity=0.730 Sum_probs=240.7
Q ss_pred cCCCCCCCCcccCCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchh
Q 007190 160 MPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 238 (613)
Q Consensus 160 ~~~~~~~~f~dV~G~~e~k~~L~eiv~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~ 238 (613)
..+.|.+||+||.|+++++++++|.|+. |++|+.|.++|.++|+|||||||||||||+||||+|++.++.|+.+.+|+|
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 3467889999999999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccC----CcccHHHHHHHHHHhhccccCCceEEEeecCCCC
Q 007190 239 EEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD 314 (613)
Q Consensus 239 ~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~----~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~ 314 (613)
+.+|+|++++.+|++|..|+.++||||||||||+++.+|-.. +.+.++++-+||.+||||.+..+|-||+|||+++
T Consensus 222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D 301 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPD 301 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcc
Confidence 999999999999999999999999999999999999998543 2345889999999999999999999999999999
Q ss_pred CCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccC
Q 007190 315 ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLT 394 (613)
Q Consensus 315 ~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It 394 (613)
.|||||+|||||||.|+||+||.++|.+||+.|.++..+.+++|++.||+.|+|+|||||+++|.+|.+.|.|+.+..||
T Consensus 302 ~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt 381 (406)
T COG1222 302 ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRDEVT 381 (406)
T ss_pred ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccCeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCc
Q 007190 395 ATELEFAKDRILMGTE 410 (613)
Q Consensus 395 ~~dl~~A~~~v~~g~~ 410 (613)
++||..|+++++....
T Consensus 382 ~~DF~~Av~KV~~~~~ 397 (406)
T COG1222 382 MEDFLKAVEKVVKKKK 397 (406)
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999999987543
No 8
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=1.9e-56 Score=527.42 Aligned_cols=308 Identities=21% Similarity=0.254 Sum_probs=265.9
Q ss_pred hhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhhh-------------------------------
Q 007190 194 FTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMF------------------------------- 242 (613)
Q Consensus 194 ~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~~------------------------------- 242 (613)
+.++|.++|+||||+||||||||+||||+|+++++||+.+++++|.+.+
T Consensus 1622 slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~ 1701 (2281)
T CHL00206 1622 SLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTEL 1701 (2281)
T ss_pred HHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhh
Confidence 4678999999999999999999999999999999999999999998543
Q ss_pred ------------hhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccc---cCCceEEE
Q 007190 243 ------------VGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---QNEGIILM 307 (613)
Q Consensus 243 ------------~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~---~~~~ViVI 307 (613)
.++...+++.+|+.|++.+||||||||||+++.+. ....++++|+.+|++.. ...+|+||
T Consensus 1702 ~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d-----s~~ltL~qLLneLDg~~~~~s~~~VIVI 1776 (2281)
T CHL00206 1702 LTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE-----SNYLSLGLLVNSLSRDCERCSTRNILVI 1776 (2281)
T ss_pred hhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc-----cceehHHHHHHHhccccccCCCCCEEEE
Confidence 22334569999999999999999999999998752 12346899999999863 45689999
Q ss_pred eecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHH--hccCCCCC-hhcHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 007190 308 AATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELY--LQDKPLAD-DVDVKAIARGTPGFNGADLANLVNIAAIK 384 (613)
Q Consensus 308 aaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~--l~~~~l~~-d~dl~~la~~t~G~sgadL~~lv~~Aa~~ 384 (613)
||||+|+.|||||+||||||+.|.|+.|+..+|.+++..+ .++..+.. .+|+..+|+.|+|||||||+++||+|+..
T Consensus 1777 AATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAali 1856 (2281)
T CHL00206 1777 ASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSI 1856 (2281)
T ss_pred EeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998854 34455543 36799999999999999999999999999
Q ss_pred HHHhCCCccCHHHHHHHHHHHhcCCccccccchhhhHHHHHHHHhhhHHHHHhcCCCCCeEEEEEeec------CCccce
Q 007190 385 AAVDGGEKLTATELEFAKDRILMGTERKTMFISEESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPR------GSALGM 458 (613)
Q Consensus 385 A~~~~~~~It~~dl~~A~~~v~~g~~~~~~~~~~~~~~~~A~hEaGhAlva~~~~~~~~v~~vti~pr------g~~~G~ 458 (613)
|+++++..|+.++++.|++|+++|.+.+.. +..++ .+|+||+||||++..+...+||++|||+|+ |.++||
T Consensus 1857 Airq~ks~Id~~~I~~Al~Rq~~g~~~~~~--~~~~~-~ia~yEiGhAvvq~~L~~~~pv~kISIy~~~~~~r~~~~yl~ 1933 (2281)
T CHL00206 1857 SITQKKSIIDTNTIRSALHRQTWDLRSQVR--SVQDH-GILFYQIGRAVAQNVLLSNCPIDPISIYMKKKSCKEGDSYLY 1933 (2281)
T ss_pred HHHcCCCccCHHHHHHHHHHHHhhhhhccc--Ccchh-hhhhhHHhHHHHHHhccCCCCcceEEEecCCccccCccccee
Confidence 999999999999999999999999876533 23333 479999999999999999999999999632 457799
Q ss_pred EEeccCCCcccccHHHHHHhhHHHccHHHHHHHHhCCCCCCCCcchHHHHHHHHHHHHHHhcCCCCC
Q 007190 459 VTQLPSSDETSVSQKQLLARLDVCMGGRVAEELIFGRDHITTGASSDLHSATELAHYMVSNCGMSDA 525 (613)
Q Consensus 459 ~~~~~~~~~~~~t~~~~~~~i~~~l~GraAE~~~~g~~~~~~ga~~Dl~~at~~a~~mv~~~Gm~~~ 525 (613)
++++|.+ +.+++.+++.+|.+||||||||+++|++.. .++.||+.|||.+.
T Consensus 1934 ~wyle~~--~~mkk~tiL~~Il~cLAGraAedlwf~~~~--------------~~~n~It~yg~vEn 1984 (2281)
T CHL00206 1934 KWYFELG--TSMKKLTILLYLLSCSAGSVAQDLWSLPGP--------------DEKNGITSYGLVEN 1984 (2281)
T ss_pred EeecCCc--ccCCHHHHHHHHHHHhhhhhhhhhccCcch--------------hhhcCcccccchhh
Confidence 9999876 899999999999999999999999998642 46777777777765
No 9
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-51 Score=447.90 Aligned_cols=248 Identities=43% Similarity=0.728 Sum_probs=235.7
Q ss_pred ccCCCCCCCCcccCCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecch
Q 007190 159 VMPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE 237 (613)
Q Consensus 159 ~~~~~~~~~f~dV~G~~e~k~~L~eiv~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~ 237 (613)
..-+.+.++|+||.|++++|.+|++.|.| +++|+.|.++|..+|+|||||||||||||++|||+|++++.+|+++++.+
T Consensus 424 ~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpE 503 (693)
T KOG0730|consen 424 ILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPE 503 (693)
T ss_pred eeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHH
Confidence 33567789999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccC-CcccHHHHHHHHHHhhccccCCceEEEeecCCCCCC
Q 007190 238 FEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW-EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 316 (613)
Q Consensus 238 ~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~-~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~L 316 (613)
+.++|+|++++.++++|++|++.+|||||+||||+++..|+.. .+...+++++||++|||+....+|+||||||+|+.|
T Consensus 504 L~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~I 583 (693)
T KOG0730|consen 504 LFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMI 583 (693)
T ss_pred HHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhc
Confidence 9999999999999999999999999999999999999998633 345689999999999999999999999999999999
Q ss_pred ChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC--CCccC
Q 007190 317 DPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDG--GEKLT 394 (613)
Q Consensus 317 d~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~--~~~It 394 (613)
|+||+||||||+.|+||+||.+.|.+||+.++++.++.+++|+..||+.|+||||+||.++|++|+..|.++. ...|+
T Consensus 584 D~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i~ 663 (693)
T KOG0730|consen 584 DPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIEATEIT 663 (693)
T ss_pred CHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986 45799
Q ss_pred HHHHHHHHHHHh
Q 007190 395 ATELEFAKDRIL 406 (613)
Q Consensus 395 ~~dl~~A~~~v~ 406 (613)
.+||++|+..+.
T Consensus 664 ~~hf~~al~~~r 675 (693)
T KOG0730|consen 664 WQHFEEALKAVR 675 (693)
T ss_pred HHHHHHHHHhhc
Confidence 999999988653
No 10
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.3e-49 Score=421.02 Aligned_cols=248 Identities=42% Similarity=0.648 Sum_probs=230.8
Q ss_pred CCCCCCCCcccCCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhh
Q 007190 161 PEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 239 (613)
Q Consensus 161 ~~~~~~~f~dV~G~~e~k~~L~eiv~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~ 239 (613)
..-|.++|+||.|+++++.+|...+.+ .++|+.|..+|...|.|||||||||||||+||||+|+|++.+|+++.+.++.
T Consensus 503 ~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELl 582 (802)
T KOG0733|consen 503 ATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELL 582 (802)
T ss_pred eecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHH
Confidence 345678999999999999999997777 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCC-cccHHHHHHHHHHhhccccCCceEEEeecCCCCCCCh
Q 007190 240 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE-GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDP 318 (613)
Q Consensus 240 ~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~-~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~ 318 (613)
.+|+|++++.+|.+|..|+..+|||||+||+|+|.++|+... ....+++||||.+|||...+.+|.||||||+|+.+||
T Consensus 583 NkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDp 662 (802)
T KOG0733|consen 583 NKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDP 662 (802)
T ss_pred HHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccch
Confidence 999999999999999999999999999999999999997653 4468999999999999999999999999999999999
Q ss_pred hhcCCCccceEEEccCCCHhhHHHHHHHHhc--cCCCCChhcHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHhC-----
Q 007190 319 ALTRPGRFDRHIVVPNPDVRGRQEILELYLQ--DKPLADDVDVKAIARGTP--GFNGADLANLVNIAAIKAAVDG----- 389 (613)
Q Consensus 319 aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~--~~~l~~d~dl~~la~~t~--G~sgadL~~lv~~Aa~~A~~~~----- 389 (613)
|++||||||+.+++++|+.++|.+||+.+.+ +.++.+|+|++.||+.+. ||||+||..||++|.+.|.++.
T Consensus 663 AiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~ 742 (802)
T KOG0733|consen 663 AILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEID 742 (802)
T ss_pred hhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999 788999999999998877 9999999999999999987752
Q ss_pred --C---------CccCHHHHHHHHHHHhcC
Q 007190 390 --G---------EKLTATELEFAKDRILMG 408 (613)
Q Consensus 390 --~---------~~It~~dl~~A~~~v~~g 408 (613)
. ..+|..||++|+.++.+.
T Consensus 743 ~~~~~~~~~~~~~~~t~~hF~eA~~~i~pS 772 (802)
T KOG0733|consen 743 SSEDDVTVRSSTIIVTYKHFEEAFQRIRPS 772 (802)
T ss_pred ccCcccceeeeeeeecHHHHHHHHHhcCCC
Confidence 1 126777999999988654
No 11
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-46 Score=364.83 Aligned_cols=280 Identities=35% Similarity=0.539 Sum_probs=248.7
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccCCCHHHHHHHHHHHHH-hcCchhhhhcCC
Q 007190 121 VWLMGAAALQKYIGSLGGIGTSGVGSSSSYAPKELNKEVMPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGG 199 (613)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~dV~G~~e~k~~L~eiv~~-l~~p~~~~~lg~ 199 (613)
+......+++++....-+.-....+++-.+ .-..+++.+++.||.|++-.|+++++.++. |.+.+.|++.|.
T Consensus 114 lkps~svalhrhsnalvdvlppeadssi~m-------l~~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigi 186 (408)
T KOG0727|consen 114 LKPSASVALHRHSNALVDVLPPEADSSISM-------LGPDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGI 186 (408)
T ss_pred cCCccchhhhhcccceeeccCCcccccccc-------cCCCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCC
Confidence 334455667766555444434444443322 122467889999999999999999999998 888999999999
Q ss_pred CCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCcc
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQ 279 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~ 279 (613)
.+|+|+|||||||||||+||+|+|+.....|+.+.+|+|+.+|.|++.+.+|++|+.|+.++|+||||||+|++..+|=.
T Consensus 187 dpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakenapsiifideidaiatkrfd 266 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFD 266 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887732
Q ss_pred C----CcccHHHHHHHHHHhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCC
Q 007190 280 W----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLAD 355 (613)
Q Consensus 280 ~----~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~ 355 (613)
. +.+.++.+-+||++||||.+..+|-||.+||+.+.|||+|+||||+|+.|+||+||..+++-+|.....+..+.+
T Consensus 267 aqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~ 346 (408)
T KOG0727|consen 267 AQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSD 346 (408)
T ss_pred ccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCc
Confidence 2 234577888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhc
Q 007190 356 DVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRILM 407 (613)
Q Consensus 356 d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A~~~v~~ 407 (613)
++|++.+..+-+-.||+||..+|++|.+.|.+.++-.|...||++|...++.
T Consensus 347 ~vdle~~v~rpdkis~adi~aicqeagm~avr~nryvvl~kd~e~ay~~~vk 398 (408)
T KOG0727|consen 347 EVDLEDLVARPDKISGADINAICQEAGMLAVRENRYVVLQKDFEKAYKTVVK 398 (408)
T ss_pred ccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcceeeeHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999887653
No 12
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-45 Score=397.24 Aligned_cols=225 Identities=43% Similarity=0.703 Sum_probs=214.6
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhhhh
Q 007190 164 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFV 243 (613)
Q Consensus 164 ~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~~~ 243 (613)
..++|+||.|.+....+|.+++..+++|+.|..+|..||+||||+||||||||+||+|+|+++++||+.+++.++++.+.
T Consensus 185 snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvS 264 (802)
T KOG0733|consen 185 SNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVS 264 (802)
T ss_pred CCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCccc-HHHHHHHHHHhhccccC----CceEEEeecCCCCCCCh
Q 007190 244 GVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHT-KKTLHQLLVEMDGFEQN----EGIILMAATNLPDILDP 318 (613)
Q Consensus 244 g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~-~~~l~~LL~~ldg~~~~----~~ViVIaaTN~p~~Ld~ 318 (613)
|++++++|++|++|+..+|||+||||||+++++|...+.+. ++++.|||..||+.... .+|+||||||+|+.|||
T Consensus 265 GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDp 344 (802)
T KOG0733|consen 265 GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDP 344 (802)
T ss_pred cccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCH
Confidence 99999999999999999999999999999999998755443 67889999999987543 67999999999999999
Q ss_pred hhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 007190 319 ALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVD 388 (613)
Q Consensus 319 aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~ 388 (613)
+|+|+||||+.|.+..|+..+|.+||+..+++..++.++|+..||+.|+||.|+||..||.+|+..|.++
T Consensus 345 aLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 345 ALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKR 414 (802)
T ss_pred HHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999876
No 13
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=2e-45 Score=361.70 Aligned_cols=238 Identities=39% Similarity=0.675 Sum_probs=224.6
Q ss_pred CCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhhh
Q 007190 163 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMF 242 (613)
Q Consensus 163 ~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~~ 242 (613)
.+..+|+||+|++++|+..+-++++|++|++|..+ .|++||||||||||||++|||+|+++++||+.+.+.++...+
T Consensus 115 ~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh 191 (368)
T COG1223 115 ISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH 191 (368)
T ss_pred hccccHhhhhchHHHHHHHHHHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence 45679999999999999999999999999998765 599999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCcc--CCcccHHHHHHHHHHhhccccCCceEEEeecCCCCCCChhh
Q 007190 243 VGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQ--WEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPAL 320 (613)
Q Consensus 243 ~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~--~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aL 320 (613)
+|.++++++++|..|++.+|||+||||+|+++-.|.- ..+.....+|.||++|||...+.+|+.||+||+|+.||+++
T Consensus 192 VGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~ai 271 (368)
T COG1223 192 VGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAI 271 (368)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHH
Confidence 9999999999999999999999999999999877642 34667899999999999999999999999999999999999
Q ss_pred cCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHH-HHHHHHHHHHHHhCCCccCHHHHH
Q 007190 321 TRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLA-NLVNIAAIKAAVDGGEKLTATELE 399 (613)
Q Consensus 321 lRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~-~lv~~Aa~~A~~~~~~~It~~dl~ 399 (613)
++ ||...|+|.+|+.++|..|++.++++.++.-+.++..+++.|.|+||+||. .++..|...|..++++.|+.+|++
T Consensus 272 Rs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~~edie 349 (368)
T COG1223 272 RS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKVEREDIE 349 (368)
T ss_pred Hh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhhhhHHHHH
Confidence 98 999999999999999999999999999999999999999999999999987 478888899999999999999999
Q ss_pred HHHHHH
Q 007190 400 FAKDRI 405 (613)
Q Consensus 400 ~A~~~v 405 (613)
+|+.+.
T Consensus 350 ~al~k~ 355 (368)
T COG1223 350 KALKKE 355 (368)
T ss_pred HHHHhh
Confidence 999873
No 14
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-45 Score=362.04 Aligned_cols=249 Identities=39% Similarity=0.634 Sum_probs=235.1
Q ss_pred ccCCCCCCCCcccCCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecch
Q 007190 159 VMPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE 237 (613)
Q Consensus 159 ~~~~~~~~~f~dV~G~~e~k~~L~eiv~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~ 237 (613)
...++|..+++||.|+++..++|.+.+.. +.++++|.++|.++|+|+|+|||||||||++|||.|...+..|+.+.+..
T Consensus 161 evDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQ 240 (424)
T KOG0652|consen 161 EVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQ 240 (424)
T ss_pred eeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchH
Confidence 34677888999999999999999996665 89999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccC----CcccHHHHHHHHHHhhccccCCceEEEeecCCC
Q 007190 238 FEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP 313 (613)
Q Consensus 238 ~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~----~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p 313 (613)
++.+|.|.+++.+|+.|..|+..+|+||||||+|++|.+|-.. +.+.+++...||+++|||.++..|-||++||+.
T Consensus 241 LVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRv 320 (424)
T KOG0652|consen 241 LVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRV 320 (424)
T ss_pred HHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccc
Confidence 9999999999999999999999999999999999999988543 234578888999999999999999999999999
Q ss_pred CCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCcc
Q 007190 314 DILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKL 393 (613)
Q Consensus 314 ~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~I 393 (613)
+.|||+|+|+||+|+.|+||.|+.+.|..|++.|.++....+|++++++|+.|++|+|++...+|-+|.+.|.+++...|
T Consensus 321 DiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~atev 400 (424)
T KOG0652|consen 321 DILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGATEV 400 (424)
T ss_pred cccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhc
Q 007190 394 TATELEFAKDRILM 407 (613)
Q Consensus 394 t~~dl~~A~~~v~~ 407 (613)
+.+||.+++..+..
T Consensus 401 ~heDfmegI~eVqa 414 (424)
T KOG0652|consen 401 THEDFMEGILEVQA 414 (424)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999998877643
No 15
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-45 Score=363.17 Aligned_cols=253 Identities=38% Similarity=0.636 Sum_probs=239.2
Q ss_pred ccCCCCCCCCcccCCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecch
Q 007190 159 VMPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE 237 (613)
Q Consensus 159 ~~~~~~~~~f~dV~G~~e~k~~L~eiv~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~ 237 (613)
.+++++.+|++||.|+.+..+.|+++++. +.+|++|-++|..+|+|||||||||||||++|||+|++.+..|+.+-+|+
T Consensus 167 ~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigse 246 (435)
T KOG0729|consen 167 QVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSE 246 (435)
T ss_pred EeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHH
Confidence 34678889999999999999999999998 89999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccC----CcccHHHHHHHHHHhhccccCCceEEEeecCCC
Q 007190 238 FEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP 313 (613)
Q Consensus 238 ~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~----~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p 313 (613)
++.+|+|++++.+|++|+.|+..+.||||+||||++++.|=.. +.+.+++..+|+.++|||.++.++-|+.+||+|
T Consensus 247 lvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrp 326 (435)
T KOG0729|consen 247 LVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRP 326 (435)
T ss_pred HHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCC
Confidence 9999999999999999999999999999999999999887321 234578888999999999999999999999999
Q ss_pred CCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCcc
Q 007190 314 DILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKL 393 (613)
Q Consensus 314 ~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~I 393 (613)
+.|||+|+||||+|+.++|.+||.++|..||+.|.+......++-++.||+.++.-+|++|+.+|.+|.+.|.+..++..
T Consensus 327 dtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairarrk~a 406 (435)
T KOG0729|consen 327 DTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVA 406 (435)
T ss_pred CCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcCCcc
Q 007190 394 TATELEFAKDRILMGTER 411 (613)
Q Consensus 394 t~~dl~~A~~~v~~g~~~ 411 (613)
|..||..|+++++.|-.+
T Consensus 407 tekdfl~av~kvvkgy~k 424 (435)
T KOG0729|consen 407 TEKDFLDAVNKVVKGYAK 424 (435)
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 999999999999887654
No 16
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification. ; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....
Probab=100.00 E-value=3.2e-45 Score=364.62 Aligned_cols=197 Identities=49% Similarity=0.699 Sum_probs=175.6
Q ss_pred CHHHHHHHHHHHhcCCccccccchhhhHHHHHHHHhhhHHHHHhcCCCCCeEEEEEeecCCccceEEeccCCCcccccHH
Q 007190 394 TATELEFAKDRILMGTERKTMFISEESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPRGSALGMVTQLPSSDETSVSQK 473 (613)
Q Consensus 394 t~~dl~~A~~~v~~g~~~~~~~~~~~~~~~~A~hEaGhAlva~~~~~~~~v~~vti~prg~~~G~~~~~~~~~~~~~t~~ 473 (613)
|++||++|+++++.|.+++...+++++++++|+||||||||++++++..||+++||+|||.++||+.+.|.++....||.
T Consensus 1 ~~~d~~~a~drv~~G~~~~~~~~~~~~~~~~A~HEAGhAvva~~l~~~~~v~~vsi~prg~~~G~~~~~~~~~~~~~t~~ 80 (213)
T PF01434_consen 1 TMEDIEEAIDRVLMGPEKKSRKLSEEEKRRIAYHEAGHAVVAYLLPPADPVSKVSIVPRGSALGFTQFTPDEDRYIRTRS 80 (213)
T ss_dssp -HHHHHHHHHHHHCCSCCTTS---HHHHHHHHHHHHHHHHHHHHSSS---EEEEESSTTCCCCHCCEECHHTT-SS-BHH
T ss_pred CHHHHHHHHHHHhcCcCcCCCCCCHHHHHHHHHHHHHHHHHHHHhcccccEEEEEEecCCCcceeEEeccchhcccccHH
Confidence 68999999999999999877788999999999999999999999998899999999999999999999999888889999
Q ss_pred HHHHhhHHHccHHHHHHHHhCCCCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCcccccC----------------CCCh
Q 007190 474 QLLARLDVCMGGRVAEELIFGRDHITTGASSDLHSATELAHYMVSNCGMSDAIGPVHIKD----------------RPSS 537 (613)
Q Consensus 474 ~~~~~i~~~l~GraAE~~~~g~~~~~~ga~~Dl~~at~~a~~mv~~~Gm~~~~g~~~~~~----------------~~~~ 537 (613)
+++++|+++|||||||+++||.+++|+|+++||++||+||+.||.+||||+++|++++.. ..|+
T Consensus 81 ~l~~~i~v~LaGraAEe~~~g~~~~stGa~~DL~~At~iA~~mv~~~Gm~~~~g~~~~~~~~~~~~~~~~~~~~~~~~s~ 160 (213)
T PF01434_consen 81 YLEDRICVLLAGRAAEELFFGEDNVSTGASSDLQQATEIARKMVASYGMGDSLGLLSYSPNDDDEVFLGREWNSRRPMSE 160 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCS-BGGGHHHHHHHHHHHHHHHHTST-TTTTTSS-SEEEE-S-SSS-E---EEESS-H
T ss_pred HHHhhHHHHHHHHHHHHhhcCcceecccchhHHHHHHHHHHHHHHHhCCCCCCceeeeeccccccccccccccccCCcch
Confidence 999999999999999999999889999999999999999999999999999999987532 2466
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHh
Q 007190 538 EMQSRIDAEVVKLLREAYDRVKALLKKHEKQLHALANALLEYETLSAEEIKRI 590 (613)
Q Consensus 538 ~~~~~id~ev~~~l~~~~~~a~~iL~~~r~~l~~la~~Lle~etL~~~ei~~i 590 (613)
++...+|.+|+++|+++|++|++||++||+.|++||++|+++++|+++||++|
T Consensus 161 ~~~~~i~~ev~~lL~~a~~~a~~iL~~~r~~l~~la~~Lle~~~L~~~ei~~I 213 (213)
T PF01434_consen 161 ETRALIDREVRKLLEEAYARAKEILEENREALEALAEALLEKETLSGEEIEEI 213 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHhhC
Confidence 78899999999999999999999999999999999999999999999999986
No 17
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-45 Score=357.58 Aligned_cols=248 Identities=38% Similarity=0.644 Sum_probs=235.7
Q ss_pred CCCCCCCcccCCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhh
Q 007190 162 EKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 240 (613)
Q Consensus 162 ~~~~~~f~dV~G~~e~k~~L~eiv~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~ 240 (613)
.-|..+++-|.|.++..++++++++. .++|+.|..+|...|+|+|||||||||||+||+|+|....+.|+.+++++++.
T Consensus 140 KvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvq 219 (404)
T KOG0728|consen 140 KVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 219 (404)
T ss_pred hCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHH
Confidence 34557899999999999999999998 89999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCC----cccHHHHHHHHHHhhccccCCceEEEeecCCCCCC
Q 007190 241 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 316 (613)
Q Consensus 241 ~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~----~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~L 316 (613)
+|.|++.+.+|++|-.|+.++|+|||.||||++|+.|...+ .+.+++...||+++|||....++-||.+||+.+.|
T Consensus 220 k~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridil 299 (404)
T KOG0728|consen 220 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL 299 (404)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccc
Confidence 99999999999999999999999999999999999885432 34578888999999999999999999999999999
Q ss_pred ChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Q 007190 317 DPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTAT 396 (613)
Q Consensus 317 d~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~ 396 (613)
||||+||||+|+.|+||+|+.+.|.+||+.|.++.++...+++..+|..++|.||+++..+|.+|.+.|.++.+-.+|.+
T Consensus 300 d~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvhvtqe 379 (404)
T KOG0728|consen 300 DPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQE 379 (404)
T ss_pred cHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC
Q 007190 397 ELEFAKDRILMGT 409 (613)
Q Consensus 397 dl~~A~~~v~~g~ 409 (613)
||+-|..+++...
T Consensus 380 dfemav~kvm~k~ 392 (404)
T KOG0728|consen 380 DFEMAVAKVMQKD 392 (404)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999987644
No 18
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-45 Score=362.22 Aligned_cols=248 Identities=37% Similarity=0.633 Sum_probs=235.0
Q ss_pred CCCCCCCcccCCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhh
Q 007190 162 EKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 240 (613)
Q Consensus 162 ~~~~~~f~dV~G~~e~k~~L~eiv~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~ 240 (613)
..|.-+|.||.|++...+++++.++. |.+|+.|..+|.++|+||+|||+||||||+||+|+|+.....|+.+-+|+++.
T Consensus 178 KaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQ 257 (440)
T KOG0726|consen 178 KAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQ 257 (440)
T ss_pred cCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHH
Confidence 44557999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCC----cccHHHHHHHHHHhhccccCCceEEEeecCCCCCC
Q 007190 241 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 316 (613)
Q Consensus 241 ~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~----~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~L 316 (613)
+|.|.+.+.+|++|..|..++|+|+||||||++|.+|-..+ .+.++++..||+++|||..+..|-||.|||+.+.|
T Consensus 258 kylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~L 337 (440)
T KOG0726|consen 258 KYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 337 (440)
T ss_pred HHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEeccccccc
Confidence 99999999999999999999999999999999999985432 23467888999999999999999999999999999
Q ss_pred ChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Q 007190 317 DPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTAT 396 (613)
Q Consensus 317 d~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~ 396 (613)
||+|.||||+|+.|.||.||...+..||..|.....+..+++++.+...-+.+||+||..+|.+|.+.|.|+.+..++++
T Consensus 338 DPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~vt~~ 417 (440)
T KOG0726|consen 338 DPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMKVTME 417 (440)
T ss_pred CHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHhhccHH
Confidence 99999999999999999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC
Q 007190 397 ELEFAKDRILMGT 409 (613)
Q Consensus 397 dl~~A~~~v~~g~ 409 (613)
||..|.++++...
T Consensus 418 DF~ka~e~V~~~K 430 (440)
T KOG0726|consen 418 DFKKAKEKVLYKK 430 (440)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998754
No 19
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-44 Score=368.66 Aligned_cols=247 Identities=34% Similarity=0.543 Sum_probs=223.3
Q ss_pred cccCCCCCCCCcccCCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecc
Q 007190 158 EVMPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGS 236 (613)
Q Consensus 158 ~~~~~~~~~~f~dV~G~~e~k~~L~eiv~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s 236 (613)
.+....+.++|+||+|++++|+-|+|.|.. +..|+.|+. ..+|-+|||++||||||||+||||+|.|++..||.++.+
T Consensus 201 dIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~G-irrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSss 279 (491)
T KOG0738|consen 201 DILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKG-IRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSS 279 (491)
T ss_pred HHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhh-cccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechh
Confidence 345567789999999999999999997766 889998875 346669999999999999999999999999999999999
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcc--cHHHHHHHHHHhhccccC----CceEEEeec
Q 007190 237 EFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGH--TKKTLHQLLVEMDGFEQN----EGIILMAAT 310 (613)
Q Consensus 237 ~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~--~~~~l~~LL~~ldg~~~~----~~ViVIaaT 310 (613)
.+.++|-|++++.+|-+|+.|+.++|++|||||||+|+++|+..+.+ .++.-++||.+|||.... .-|+|+|+|
T Consensus 280 tltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAAT 359 (491)
T KOG0738|consen 280 TLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAAT 359 (491)
T ss_pred hhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEecc
Confidence 99999999999999999999999999999999999999999876443 577889999999997542 338999999
Q ss_pred CCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC-
Q 007190 311 NLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDG- 389 (613)
Q Consensus 311 N~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~- 389 (613)
|.||.||.|++| ||.+.|+||+|+.++|..+|+..++.....++++++.|++.++||||+||.++|++|.+.+.|+.
T Consensus 360 N~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i 437 (491)
T KOG0738|consen 360 NFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKI 437 (491)
T ss_pred CCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 99999999999999999999999999999999999999999999999999999999999998842
Q ss_pred ----------------CCccCHHHHHHHHHHHhc
Q 007190 390 ----------------GEKLTATELEFAKDRILM 407 (613)
Q Consensus 390 ----------------~~~It~~dl~~A~~~v~~ 407 (613)
+..|+..||+.|+.++.+
T Consensus 438 ~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~p 471 (491)
T KOG0738|consen 438 AGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRP 471 (491)
T ss_pred hcCCcHHhhhhhhhccccccchhhHHHHHHHcCc
Confidence 134788888888887744
No 20
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-43 Score=388.43 Aligned_cols=247 Identities=37% Similarity=0.631 Sum_probs=225.1
Q ss_pred cCCCCCCCCcccCCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchh
Q 007190 160 MPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 238 (613)
Q Consensus 160 ~~~~~~~~f~dV~G~~e~k~~L~eiv~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~ 238 (613)
.|.-|.++|+||.|.+++|.++.+-+.. |++|+.|.. |.+...|||||||||||||++|||+|.|+...|+++.+.++
T Consensus 663 APKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPEL 741 (953)
T KOG0736|consen 663 APKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL 741 (953)
T ss_pred CCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHH
Confidence 3567789999999999999999999888 999999875 66767799999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccC---CcccHHHHHHHHHHhhccc--cCCceEEEeecCCC
Q 007190 239 EEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW---EGHTKKTLHQLLVEMDGFE--QNEGIILMAATNLP 313 (613)
Q Consensus 239 ~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~---~~~~~~~l~~LL~~ldg~~--~~~~ViVIaaTN~p 313 (613)
..||+|++++++|++|++||..+|||||+||+|++.++|+.. .+-..+++.|||.+|||.. ...+|+||||||+|
T Consensus 742 LNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRP 821 (953)
T KOG0736|consen 742 LNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRP 821 (953)
T ss_pred HHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCc
Confidence 999999999999999999999999999999999999998754 3456899999999999997 56789999999999
Q ss_pred CCCChhhcCCCccceEEEccCC-CHhhHHHHHHHHhccCCCCChhcHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHhCC-
Q 007190 314 DILDPALTRPGRFDRHIVVPNP-DVRGRQEILELYLQDKPLADDVDVKAIARGTP-GFNGADLANLVNIAAIKAAVDGG- 390 (613)
Q Consensus 314 ~~Ld~aLlRpgRFd~~I~v~~P-d~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~-G~sgadL~~lv~~Aa~~A~~~~~- 390 (613)
+.|||+|+||||||+-++++++ |.+.+..+|+...++..+++++|+.++|+.++ .|||||+-.+|..|.+.|.++.-
T Consensus 822 DLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~ 901 (953)
T KOG0736|consen 822 DLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIH 901 (953)
T ss_pred cccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987 46678899999999999999999999999886 69999999999999999987621
Q ss_pred ----------------CccCHHHHHHHHHHHhc
Q 007190 391 ----------------EKLTATELEFAKDRILM 407 (613)
Q Consensus 391 ----------------~~It~~dl~~A~~~v~~ 407 (613)
-.|+++||.++.++..+
T Consensus 902 ~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~P 934 (953)
T KOG0736|consen 902 DIESGTISEEEQESSSVRVTMEDFLKSAKRLQP 934 (953)
T ss_pred HhhhccccccccCCceEEEEHHHHHHHHHhcCC
Confidence 13899999999988644
No 21
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=3e-42 Score=371.89 Aligned_cols=249 Identities=37% Similarity=0.603 Sum_probs=233.0
Q ss_pred CCCCCCCCcccCCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhh
Q 007190 161 PEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 239 (613)
Q Consensus 161 ~~~~~~~f~dV~G~~e~k~~L~eiv~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~ 239 (613)
.+.+.++|+||+|++.+|+++++.+.+ +.+|+.|.++|..+|+|+|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 137 ~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~ 216 (398)
T PTZ00454 137 SEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFV 216 (398)
T ss_pred cCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHH
Confidence 456788999999999999999999886 8999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCC----cccHHHHHHHHHHhhccccCCceEEEeecCCCCC
Q 007190 240 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 315 (613)
Q Consensus 240 ~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~----~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~ 315 (613)
..|.|.+.+.++++|..|+..+||||||||+|.++.++.... ....+.+.+++..++++....+++||+|||+|+.
T Consensus 217 ~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~ 296 (398)
T PTZ00454 217 QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADT 296 (398)
T ss_pred HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchh
Confidence 999999999999999999999999999999999987764321 2345688899999999988889999999999999
Q ss_pred CChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Q 007190 316 LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTA 395 (613)
Q Consensus 316 Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~ 395 (613)
|||+++||||||+.|+|++|+.++|..||+.++.+.++..++++..++..|+||||+||.++|++|.+.|.++++..|+.
T Consensus 297 LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~ 376 (398)
T PTZ00454 297 LDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYVILP 376 (398)
T ss_pred CCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCccCH
Confidence 99999999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCC
Q 007190 396 TELEFAKDRILMGT 409 (613)
Q Consensus 396 ~dl~~A~~~v~~g~ 409 (613)
+||..|+.+++.+.
T Consensus 377 ~df~~A~~~v~~~~ 390 (398)
T PTZ00454 377 KDFEKGYKTVVRKT 390 (398)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999987653
No 22
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=8.6e-41 Score=361.23 Aligned_cols=252 Identities=46% Similarity=0.687 Sum_probs=233.7
Q ss_pred CCCCCCCCcccCCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhh
Q 007190 161 PEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 239 (613)
Q Consensus 161 ~~~~~~~f~dV~G~~e~k~~L~eiv~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~ 239 (613)
.+.+.++|+||.|.+++++++++.+.+ +.+|+.|..+|..+|+|+|||||||||||++|+++|++++.+|+.++++++.
T Consensus 123 ~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~ 202 (389)
T PRK03992 123 IESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 202 (389)
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHh
Confidence 355678999999999999999998877 8999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCC----cccHHHHHHHHHHhhccccCCceEEEeecCCCCC
Q 007190 240 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 315 (613)
Q Consensus 240 ~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~----~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~ 315 (613)
..|.|.+.+.++.+|..++..+||||||||+|.++.++.... ....+++.+++.+++++....+++||+|||+++.
T Consensus 203 ~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ 282 (389)
T PRK03992 203 QKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDI 282 (389)
T ss_pred HhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhh
Confidence 999999999999999999999999999999999987765332 2235678899999999988889999999999999
Q ss_pred CChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Q 007190 316 LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTA 395 (613)
Q Consensus 316 Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~ 395 (613)
+|++++||||||+.|+||+|+.++|.+||+.|+++..+..++++..++..|.||+|+||.++|++|++.|.+++...|+.
T Consensus 283 ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i~~ 362 (389)
T PRK03992 283 LDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEVTM 362 (389)
T ss_pred CCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCcCH
Confidence 99999999999999999999999999999999999888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCccc
Q 007190 396 TELEFAKDRILMGTERK 412 (613)
Q Consensus 396 ~dl~~A~~~v~~g~~~~ 412 (613)
+||.+|++++..+....
T Consensus 363 ~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 363 EDFLKAIEKVMGKEEKD 379 (389)
T ss_pred HHHHHHHHHHhcccccc
Confidence 99999999987765443
No 23
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=1.4e-40 Score=361.24 Aligned_cols=248 Identities=38% Similarity=0.650 Sum_probs=231.5
Q ss_pred CCCCCCCCcccCCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhh
Q 007190 161 PEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 239 (613)
Q Consensus 161 ~~~~~~~f~dV~G~~e~k~~L~eiv~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~ 239 (613)
.+.+..+|+||.|++++++++++.+.+ +.+|+.|..+|..+|+|+|||||||||||++|+++|++++.+|+.++++++.
T Consensus 175 ~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~ 254 (438)
T PTZ00361 175 DKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELI 254 (438)
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhh
Confidence 356678999999999999999999986 8999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCC----cccHHHHHHHHHHhhccccCCceEEEeecCCCCC
Q 007190 240 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 315 (613)
Q Consensus 240 ~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~----~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~ 315 (613)
..|.|.+...++.+|..|+.+.||||||||||.++.++.... ....+++.++|..++++....++.||+|||+++.
T Consensus 255 ~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~ 334 (438)
T PTZ00361 255 QKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIES 334 (438)
T ss_pred hhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHH
Confidence 999999999999999999999999999999999987764321 2235678899999999988889999999999999
Q ss_pred CChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Q 007190 316 LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTA 395 (613)
Q Consensus 316 Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~ 395 (613)
||++++||||||+.|+|++||.++|.+||+.|+.+..+..++++..++..+.|+||+||.++|++|++.|.++++..|+.
T Consensus 335 LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~ 414 (438)
T PTZ00361 335 LDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERRMKVTQ 414 (438)
T ss_pred hhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCccCH
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC
Q 007190 396 TELEFAKDRILMG 408 (613)
Q Consensus 396 ~dl~~A~~~v~~g 408 (613)
+||..|+++++..
T Consensus 415 ~D~~~A~~~v~~~ 427 (438)
T PTZ00361 415 ADFRKAKEKVLYR 427 (438)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998653
No 24
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-41 Score=338.68 Aligned_cols=231 Identities=38% Similarity=0.642 Sum_probs=208.4
Q ss_pred ccccccCCCCCCCCcccCCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEe
Q 007190 155 LNKEVMPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 233 (613)
Q Consensus 155 ~~~~~~~~~~~~~f~dV~G~~e~k~~L~eiv~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~i 233 (613)
++..+..++|.++|+||+|++.+|+.|+|.|-. ++.|+.|.. +.++-+|+||||||||||++||+|+|.|++..||++
T Consensus 119 L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSv 197 (439)
T KOG0739|consen 119 LNSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSV 197 (439)
T ss_pred hhhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEe
Confidence 445677789999999999999999999997766 888988873 334559999999999999999999999999999999
Q ss_pred ecchhhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCc-ccHHHHHHHHHHhhccc-cCCceEEEeecC
Q 007190 234 AGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG-HTKKTLHQLLVEMDGFE-QNEGIILMAATN 311 (613)
Q Consensus 234 s~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~-~~~~~l~~LL~~ldg~~-~~~~ViVIaaTN 311 (613)
+.|+++++|.|++++.++.+|+.|++++|+||||||||++++.|+.... ..+++-.+||.+|.|.. .+.+|+|+++||
T Consensus 198 SSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATN 277 (439)
T KOG0739|consen 198 SSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATN 277 (439)
T ss_pred ehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCC
Confidence 9999999999999999999999999999999999999999999876544 34667779999999984 467899999999
Q ss_pred CCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 007190 312 LPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVD 388 (613)
Q Consensus 312 ~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~ 388 (613)
-|+.||.|++| ||+++|++|+|+...|..+|+.|+...+.. .+.|+..|++.|+||||+||.-+|+.|.+.-.|.
T Consensus 278 iPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRk 353 (439)
T KOG0739|consen 278 IPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRK 353 (439)
T ss_pred CchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHH
Confidence 99999999999 999999999999999999999999887654 6778999999999999999999999988876654
No 25
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-40 Score=366.75 Aligned_cols=247 Identities=48% Similarity=0.726 Sum_probs=231.5
Q ss_pred ccCCCCCCCCcccCCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecch
Q 007190 159 VMPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE 237 (613)
Q Consensus 159 ~~~~~~~~~f~dV~G~~e~k~~L~eiv~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~ 237 (613)
+....+.++|+|+.|.+.+|+.+++.+.+ ++.++.|...+.++|+|+|||||||||||++|+++|.+++.+|+.+.+++
T Consensus 232 ~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~ 311 (494)
T COG0464 232 VLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSE 311 (494)
T ss_pred cccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHH
Confidence 33456778999999999999999999999 88999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcc-cHHHHHHHHHHhhccccCCceEEEeecCCCCCC
Q 007190 238 FEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGH-TKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 316 (613)
Q Consensus 238 ~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~-~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~L 316 (613)
+.++|+|++++.++.+|..|++.+||||||||+|++...|+..... ..+.+++||.+|++.....+|+||+|||+|+.+
T Consensus 312 l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~l 391 (494)
T COG0464 312 LLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDL 391 (494)
T ss_pred HhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCcccc
Confidence 9999999999999999999999999999999999999988765433 369999999999999999999999999999999
Q ss_pred ChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCC--CCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC-CCcc
Q 007190 317 DPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKP--LADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDG-GEKL 393 (613)
Q Consensus 317 d~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~--l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~-~~~I 393 (613)
|++++||||||+.++||+||.++|.+||+.|+++.. +..++++..+++.|+||||+||.++|++|++.+.++. ...|
T Consensus 392 d~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~~ 471 (494)
T COG0464 392 DPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARRREV 471 (494)
T ss_pred CHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCCc
Confidence 999999999999999999999999999999998544 4578999999999999999999999999999999998 7889
Q ss_pred CHHHHHHHHHHH
Q 007190 394 TATELEFAKDRI 405 (613)
Q Consensus 394 t~~dl~~A~~~v 405 (613)
|.+||..|+.++
T Consensus 472 ~~~~~~~a~~~~ 483 (494)
T COG0464 472 TLDDFLDALKKI 483 (494)
T ss_pred cHHHHHHHHHhc
Confidence 999999999874
No 26
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-40 Score=357.94 Aligned_cols=224 Identities=40% Similarity=0.662 Sum_probs=215.1
Q ss_pred CCCCcccCCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhhhh
Q 007190 165 VKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFV 243 (613)
Q Consensus 165 ~~~f~dV~G~~e~k~~L~eiv~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~~~ 243 (613)
...|+||.|..++|+.|.++++| -+.|..|.+.+.+.+.|||||||||||||+||-++|..++..|+++.+.++..+|.
T Consensus 663 gi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyI 742 (952)
T KOG0735|consen 663 GIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYI 742 (952)
T ss_pred CCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHh
Confidence 37899999999999999999999 78999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccC-CcccHHHHHHHHHHhhccccCCceEEEeecCCCCCCChhhcC
Q 007190 244 GVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW-EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTR 322 (613)
Q Consensus 244 g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~-~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlR 322 (613)
|.+++.+|++|..|+..+|||||+||+|++.++|+.. .+-..+++||||.+|||.+.-.||.|+|||.+|+.|||||+|
T Consensus 743 GaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLR 822 (952)
T KOG0735|consen 743 GASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLR 822 (952)
T ss_pred cccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcC
Confidence 9999999999999999999999999999999999854 466799999999999999999999999999999999999999
Q ss_pred CCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 007190 323 PGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVD 388 (613)
Q Consensus 323 pgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~ 388 (613)
|||+|+.++.|+|+..+|.+|++.......++.++|++.+|..|+||||+||..++..|.+.|..+
T Consensus 823 pGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 823 PGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred CCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999899999999999999999999999999999999887654
No 27
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-40 Score=337.85 Aligned_cols=230 Identities=37% Similarity=0.586 Sum_probs=209.5
Q ss_pred ccccCCCCCCCCcccCCCHHHHHHHHHHHHH-hcCchhhhhcC-CCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEee
Q 007190 157 KEVMPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLG-GKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 234 (613)
Q Consensus 157 ~~~~~~~~~~~f~dV~G~~e~k~~L~eiv~~-l~~p~~~~~lg-~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is 234 (613)
..+.|..-.++|+||.|++++|++|++.|.. ++.|+.|..-+ .++|+|||||||||||||++|+|+|+++|.+|+.++
T Consensus 80 ~~v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~ 159 (386)
T KOG0737|consen 80 DVVPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVS 159 (386)
T ss_pred cccchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceee
Confidence 3456677789999999999999999998877 99999996322 368999999999999999999999999999999999
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCC-cccHHHHHHHHHHhhccccCCc--eEEEeecC
Q 007190 235 GSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE-GHTKKTLHQLLVEMDGFEQNEG--IILMAATN 311 (613)
Q Consensus 235 ~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~-~~~~~~l~~LL~~ldg~~~~~~--ViVIaaTN 311 (613)
.+.+.++|.|++.+.++.+|..|.+-.||||||||+|.+.+.|...+ ......-++|...+||+..+.+ |+|+||||
T Consensus 160 ~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATN 239 (386)
T KOG0737|consen 160 VSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATN 239 (386)
T ss_pred ccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCC
Confidence 99999999999999999999999999999999999999988884332 2245667899999999977655 99999999
Q ss_pred CCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 007190 312 LPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVD 388 (613)
Q Consensus 312 ~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~ 388 (613)
+|..||.|++| |+.++++|+.|+.++|.+||+.++++..+++++|+..+|..|.||||.||.++|..|+....++
T Consensus 240 RP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire 314 (386)
T KOG0737|consen 240 RPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRE 314 (386)
T ss_pred CCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHH
Confidence 99999999999 9999999999999999999999999999999999999999999999999999999999887664
No 28
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=2.5e-39 Score=375.97 Aligned_cols=246 Identities=43% Similarity=0.698 Sum_probs=228.0
Q ss_pred CCCCCCCcccCCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhh
Q 007190 162 EKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 240 (613)
Q Consensus 162 ~~~~~~f~dV~G~~e~k~~L~eiv~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~ 240 (613)
+.+.++|+||.|++++|++|++.+.+ +++++.|.++|.++|+|+|||||||||||++|+++|++++.+|+.++++++.+
T Consensus 446 ~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~ 525 (733)
T TIGR01243 446 EVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILS 525 (733)
T ss_pred cccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhh
Confidence 34567999999999999999999987 89999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCC--cccHHHHHHHHHHhhccccCCceEEEeecCCCCCCCh
Q 007190 241 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE--GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDP 318 (613)
Q Consensus 241 ~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~--~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~ 318 (613)
+|+|.+++.++.+|..|+..+||||||||+|++++.++... ....+.+++||.+||++....+++||+|||+|+.||+
T Consensus 526 ~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~ 605 (733)
T TIGR01243 526 KWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDP 605 (733)
T ss_pred cccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCH
Confidence 99999999999999999999999999999999988776432 2346789999999999988889999999999999999
Q ss_pred hhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC---------
Q 007190 319 ALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDG--------- 389 (613)
Q Consensus 319 aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~--------- 389 (613)
+++||||||+.|++|+||.++|.+||+.+.++.++..++++..+|+.|+||||+||.++|++|++.|.++.
T Consensus 606 allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~ 685 (733)
T TIGR01243 606 ALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKL 685 (733)
T ss_pred hhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999888742
Q ss_pred ---------CCccCHHHHHHHHHHHhc
Q 007190 390 ---------GEKLTATELEFAKDRILM 407 (613)
Q Consensus 390 ---------~~~It~~dl~~A~~~v~~ 407 (613)
...|+.+||..|+.++.+
T Consensus 686 ~~~~~~~~~~~~i~~~~f~~al~~~~p 712 (733)
T TIGR01243 686 EVGEEEFLKDLKVEMRHFLEALKKVKP 712 (733)
T ss_pred hcccccccccCcccHHHHHHHHHHcCC
Confidence 126899999999987644
No 29
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=1.9e-38 Score=349.36 Aligned_cols=239 Identities=26% Similarity=0.410 Sum_probs=211.7
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhhhh
Q 007190 164 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFV 243 (613)
Q Consensus 164 ~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~~~ 243 (613)
+..+|+||.|++.+|+++.+....+ +..+...|.++|+|+|||||||||||++|+++|++++.||+.++++.+..+|+
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~~--~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~v 300 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTSF--SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIV 300 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHh--hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhccccc
Confidence 4578999999999999999865543 23456678899999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCcc--CCcccHHHHHHHHHHhhccccCCceEEEeecCCCCCCChhhc
Q 007190 244 GVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQ--WEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALT 321 (613)
Q Consensus 244 g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~--~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLl 321 (613)
|.++.+++.+|..|+..+||||||||||.++..+.. ..+...+.+++++..|+. .+.+|+||+|||+++.||++++
T Consensus 301 Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld~all 378 (489)
T CHL00195 301 GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLPLEIL 378 (489)
T ss_pred ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCCHHHh
Confidence 999999999999999999999999999998765432 233457788899998884 4567999999999999999999
Q ss_pred CCCccceEEEccCCCHhhHHHHHHHHhccCCCC--ChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 007190 322 RPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA--DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELE 399 (613)
Q Consensus 322 RpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~--~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~ 399 (613)
||||||+.+++++|+.++|.+||+.|+++.... .+.++..+++.|.||||+||+++|++|...|..++ +.++.+|+.
T Consensus 379 R~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~-~~lt~~dl~ 457 (489)
T CHL00195 379 RKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK-REFTTDDIL 457 (489)
T ss_pred CCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC-CCcCHHHHH
Confidence 999999999999999999999999999886432 47889999999999999999999999998887665 579999999
Q ss_pred HHHHHHhc
Q 007190 400 FAKDRILM 407 (613)
Q Consensus 400 ~A~~~v~~ 407 (613)
.|+.++.+
T Consensus 458 ~a~~~~~P 465 (489)
T CHL00195 458 LALKQFIP 465 (489)
T ss_pred HHHHhcCC
Confidence 99988765
No 30
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=7.8e-38 Score=335.87 Aligned_cols=245 Identities=46% Similarity=0.720 Sum_probs=227.1
Q ss_pred CCCCCCCCcccCCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhh
Q 007190 161 PEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 239 (613)
Q Consensus 161 ~~~~~~~f~dV~G~~e~k~~L~eiv~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~ 239 (613)
.+.+.++|+||.|.+++++++.+.+.+ +.+|+.|..+|..+|+|+|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 114 ~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~ 193 (364)
T TIGR01242 114 EERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 193 (364)
T ss_pred ccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHH
Confidence 355678999999999999999998876 8999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCC----cccHHHHHHHHHHhhccccCCceEEEeecCCCCC
Q 007190 240 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 315 (613)
Q Consensus 240 ~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~----~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~ 315 (613)
..|.|.+...++.+|..++...|+||||||+|.++..+.... ......+.+++.+++++....++.||+|||+++.
T Consensus 194 ~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ 273 (364)
T TIGR01242 194 RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDI 273 (364)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhh
Confidence 999999999999999999999999999999999987664321 2235678899999999887888999999999999
Q ss_pred CChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Q 007190 316 LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTA 395 (613)
Q Consensus 316 Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~ 395 (613)
+|++++||||||+.|.|+.|+.++|.+||+.++.+..+..++++..+++.|+||+|+||.++|++|...|.++++..|+.
T Consensus 274 ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~i~~ 353 (364)
T TIGR01242 274 LDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREERDYVTM 353 (364)
T ss_pred CChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Confidence 99999999999999999999999999999999998888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 007190 396 TELEFAKDRI 405 (613)
Q Consensus 396 ~dl~~A~~~v 405 (613)
+||..|++++
T Consensus 354 ~d~~~a~~~~ 363 (364)
T TIGR01242 354 DDFIKAVEKV 363 (364)
T ss_pred HHHHHHHHHh
Confidence 9999999876
No 31
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-38 Score=321.18 Aligned_cols=242 Identities=40% Similarity=0.634 Sum_probs=226.9
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhhh
Q 007190 164 NVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMF 242 (613)
Q Consensus 164 ~~~~f~dV~G~~e~k~~L~eiv~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~~ 242 (613)
...+|+++.|.-+...++++.++. +.+|..|.+.|.++|++++||||||||||++|+++|...+++|+.++.+.+.+.|
T Consensus 127 ~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky 206 (388)
T KOG0651|consen 127 RNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY 206 (388)
T ss_pred cccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhh
Confidence 347999999999999999998877 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCC----cccHHHHHHHHHHhhccccCCceEEEeecCCCCCCCh
Q 007190 243 VGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDP 318 (613)
Q Consensus 243 ~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~----~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~ 318 (613)
.|++++.+|+.|..|+...|||||+||||++++++.+.. ...+++|-.|+++|++|.....|-+|+|||+|+.|||
T Consensus 207 iGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdp 286 (388)
T KOG0651|consen 207 IGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDP 286 (388)
T ss_pred cccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccch
Confidence 999999999999999999999999999999998874322 2346788889999999999999999999999999999
Q ss_pred hhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHH
Q 007190 319 ALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATEL 398 (613)
Q Consensus 319 aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl 398 (613)
+|+||||+|+.+++|+|+...|..|++.|.+.......+|.+.+.+.++||+|+|+++.|.+|-+.|.++....+-.+++
T Consensus 287 aLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~~vl~Ed~ 366 (388)
T KOG0651|consen 287 ALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERDEVLHEDF 366 (388)
T ss_pred hhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhhHHHhHHHH
Confidence 99999999999999999999999999999988888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 007190 399 EFAKDRI 405 (613)
Q Consensus 399 ~~A~~~v 405 (613)
..++.++
T Consensus 367 ~k~vrk~ 373 (388)
T KOG0651|consen 367 MKLVRKQ 373 (388)
T ss_pred HHHHHHH
Confidence 9888765
No 32
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=4.1e-36 Score=330.61 Aligned_cols=266 Identities=33% Similarity=0.490 Sum_probs=219.7
Q ss_pred ccCCCCCCCCcccCCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCC--------
Q 007190 159 VMPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP-------- 229 (613)
Q Consensus 159 ~~~~~~~~~f~dV~G~~e~k~~L~eiv~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~p-------- 229 (613)
+..+.+.++|+||.|+++.++++++.+.. +.+|+.|...|.++|+|+|||||||||||++|+++|++++.+
T Consensus 172 ~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~ 251 (512)
T TIGR03689 172 VLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDK 251 (512)
T ss_pred eeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCc
Confidence 44566778999999999999999998876 889999999999999999999999999999999999998654
Q ss_pred --eeEeecchhhhhhhhhhHHHHHHHHHHHHcC----CCeEEEEcCCCccccCCccCC--cccHHHHHHHHHHhhccccC
Q 007190 230 --FFYRAGSEFEEMFVGVGARRVRSLFQAAKKK----APCIIFIDEIDAVGSTRKQWE--GHTKKTLHQLLVEMDGFEQN 301 (613)
Q Consensus 230 --fi~is~s~~~~~~~g~~~~~vr~lf~~A~~~----~P~ILfIDEiD~l~~~r~~~~--~~~~~~l~~LL~~ldg~~~~ 301 (613)
|+.++++++..+|.|.+++.++.+|..++.. .||||||||+|+++.+|+... ......+++||.+||++...
T Consensus 252 ~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 252 SYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred eeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC
Confidence 6677888899999999999999999998764 699999999999988775432 22356789999999999888
Q ss_pred CceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccC-CCC---------ChhcHHHHH--------
Q 007190 302 EGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK-PLA---------DDVDVKAIA-------- 363 (613)
Q Consensus 302 ~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~-~l~---------~d~dl~~la-------- 363 (613)
.+++||+|||+++.|||+++||||||++|+|++|+.++|.+||+.|+... ++. ...++..++
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~ 411 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLY 411 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999998652 331 111122221
Q ss_pred ---------------------hcCCCCCHHHHHHHHHHHHHHHHHh----CCCccCHHHHHHHHHHHhcCCccccccchh
Q 007190 364 ---------------------RGTPGFNGADLANLVNIAAIKAAVD----GGEKLTATELEFAKDRILMGTERKTMFISE 418 (613)
Q Consensus 364 ---------------------~~t~G~sgadL~~lv~~Aa~~A~~~----~~~~It~~dl~~A~~~v~~g~~~~~~~~~~ 418 (613)
..++.+||++|+++|.+|...|..+ +...|+.+|+..|++.-....+.-+...++
T Consensus 412 a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~~~~~~~~~~~~ 491 (512)
T TIGR03689 412 ATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFRESEDLPNTTNP 491 (512)
T ss_pred hhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhcccccCCCCCCH
Confidence 1245689999999999999888765 346899999999998877666554444555
Q ss_pred hhHHHH
Q 007190 419 ESKKLT 424 (613)
Q Consensus 419 ~~~~~~ 424 (613)
++-.++
T Consensus 492 ~~w~~~ 497 (512)
T TIGR03689 492 DDWARI 497 (512)
T ss_pred HHHhhh
Confidence 554444
No 33
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-34 Score=311.18 Aligned_cols=241 Identities=39% Similarity=0.575 Sum_probs=226.3
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhhh
Q 007190 164 NVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMF 242 (613)
Q Consensus 164 ~~~~f~dV~G~~e~k~~L~eiv~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~~ 242 (613)
+..+ .++.|+......+++.+.+ +.+|..|...|.++|+|+|+|||||||||.+++++|++.++.++.++++++..+|
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 4556 7999999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHcCC-CeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCCCCChhhc
Q 007190 243 VGVGARRVRSLFQAAKKKA-PCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALT 321 (613)
Q Consensus 243 ~g~~~~~vr~lf~~A~~~~-P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLl 321 (613)
.|++++.+|..|+.|.+.+ |+||||||+|+++++|........++..+|+..||+.....+++||++||+|+.||++++
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alR 338 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALR 338 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhh
Confidence 9999999999999999999 999999999999998876555567889999999999999999999999999999999999
Q ss_pred CCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 007190 322 RPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFA 401 (613)
Q Consensus 322 RpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A 401 (613)
| ||||+.+.+..|+..+|.+|++.+.++.++.+++++..+|..|.||.|+||..+|++|.+.+.++ +++++..|
T Consensus 339 R-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~~~~~~~A 412 (693)
T KOG0730|consen 339 R-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR-----TLEIFQEA 412 (693)
T ss_pred c-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-----hHHHHHHH
Confidence 9 99999999999999999999999999999988899999999999999999999999999999887 88899998
Q ss_pred HHHHhcCCcc
Q 007190 402 KDRILMGTER 411 (613)
Q Consensus 402 ~~~v~~g~~~ 411 (613)
..++.+...+
T Consensus 413 ~~~i~psa~R 422 (693)
T KOG0730|consen 413 LMGIRPSALR 422 (693)
T ss_pred HhcCCchhhh
Confidence 8877655433
No 34
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=3.6e-33 Score=291.07 Aligned_cols=260 Identities=18% Similarity=0.217 Sum_probs=197.8
Q ss_pred CCCCCccc-CCCHHHHHHHHHHHHHh-cCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhh
Q 007190 164 NVKTFKDV-KGCDDAKQELVEVVEYL-KNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM 241 (613)
Q Consensus 164 ~~~~f~dV-~G~~e~k~~L~eiv~~l-~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~ 241 (613)
...+|+++ .|+--.+..+..++..+ ++- ...+|.++|++++||||||||||++|+++|++++++|+.++++++.++
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~--l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk 187 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKNF--LALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESE 187 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhhh--hhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcC
Confidence 44679998 67766666666655332 221 122578999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHc-----CCCeEEEEcCCCccccCCccCCcc-cHHHH-HHHHHHhhcc------------ccCC
Q 007190 242 FVGVGARRVRSLFQAAKK-----KAPCIIFIDEIDAVGSTRKQWEGH-TKKTL-HQLLVEMDGF------------EQNE 302 (613)
Q Consensus 242 ~~g~~~~~vr~lf~~A~~-----~~P~ILfIDEiD~l~~~r~~~~~~-~~~~l-~~LL~~ldg~------------~~~~ 302 (613)
|+|++++.+|++|..|+. .+||||||||||+++++++..+.. ..+.+ .+|+.+||+. ....
T Consensus 188 ~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~ 267 (413)
T PLN00020 188 NAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIP 267 (413)
T ss_pred cCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCC
Confidence 999999999999999975 469999999999999988643322 23444 6899988863 3467
Q ss_pred ceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCC----CCHHHHHHHH
Q 007190 303 GIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPG----FNGADLANLV 378 (613)
Q Consensus 303 ~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G----~sgadL~~lv 378 (613)
+|+||+|||+|+.|||+|+||||||+.+ ..|+.++|.+||+.++++..+. ..|+..|+..++| |.|+--..+.
T Consensus 268 ~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~y 344 (413)
T PLN00020 268 RVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVY 344 (413)
T ss_pred CceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHH
Confidence 7999999999999999999999999975 5899999999999999998775 6889999999887 5565555555
Q ss_pred HHHHHHHHHhCCCccCHHHHHHHHHHHhcCCccccccchhhhHHHHHHHHhhhHHHHH
Q 007190 379 NIAAIKAAVDGGEKLTATELEFAKDRILMGTERKTMFISEESKKLTAYHESGHAIVAF 436 (613)
Q Consensus 379 ~~Aa~~A~~~~~~~It~~dl~~A~~~v~~g~~~~~~~~~~~~~~~~A~hEaGhAlva~ 436 (613)
.++...-..+ + -++..-.+.+...+. ...+.+-....-.+-|+||.++..
T Consensus 345 d~~v~~~i~~----~---g~~~~~~~l~~~~~~-~p~f~~~~~t~~~l~~~g~~l~~e 394 (413)
T PLN00020 345 DDEVRKWIAE----V---GVENLGKKLVNSKKG-PPTFEPPKMTLEKLLEYGNMLVRE 394 (413)
T ss_pred HHHHHHHHHH----h---hHHHHHHHHhcCCCC-CCCCCCCCCCHHHHHHHHHHHHHH
Confidence 5544332221 1 222223333333333 333444455677889999999875
No 35
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.4e-32 Score=319.48 Aligned_cols=245 Identities=45% Similarity=0.690 Sum_probs=223.7
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhhh
Q 007190 164 NVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMF 242 (613)
Q Consensus 164 ~~~~f~dV~G~~e~k~~L~eiv~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~~ 242 (613)
+.++|+||+|.+++++.+++++.+ +++|+.|..+|..+|+|+|||||||||||++|+++|++++.+|+.++++++...|
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~ 252 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY 252 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc
Confidence 457999999999999999999887 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCc-ccHHHHHHHHHHhhccccCCceEEEeecCCCCCCChhhc
Q 007190 243 VGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG-HTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALT 321 (613)
Q Consensus 243 ~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~-~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLl 321 (613)
.|.....++.+|..+....|+||||||+|.+..+++...+ .....+++|+..|+++..+..++||++||+++.||++++
T Consensus 253 ~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~ 332 (733)
T TIGR01243 253 YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALR 332 (733)
T ss_pred ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHh
Confidence 9999999999999999999999999999999887754332 246788999999999988889999999999999999999
Q ss_pred CCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC------------
Q 007190 322 RPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDG------------ 389 (613)
Q Consensus 322 RpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~------------ 389 (613)
|+|||++.+.++.|+.++|.+||+.+.+...+..+.++..++..|.||+++|+..+|+.|+..+.++.
T Consensus 333 r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~ 412 (733)
T TIGR01243 333 RPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAEE 412 (733)
T ss_pred CchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccccccccc
Confidence 99999999999999999999999999998888888999999999999999999999999998876642
Q ss_pred -------CCccCHHHHHHHHHHHhcC
Q 007190 390 -------GEKLTATELEFAKDRILMG 408 (613)
Q Consensus 390 -------~~~It~~dl~~A~~~v~~g 408 (613)
...++.+|+..|+..+.+.
T Consensus 413 i~~~~~~~~~v~~~df~~Al~~v~ps 438 (733)
T TIGR01243 413 IPAEVLKELKVTMKDFMEALKMVEPS 438 (733)
T ss_pred ccchhcccccccHHHHHHHHhhcccc
Confidence 1247889999998876554
No 36
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-32 Score=316.13 Aligned_cols=250 Identities=35% Similarity=0.558 Sum_probs=221.7
Q ss_pred CCCCCCCcccCCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc-----CCCeeEeec
Q 007190 162 EKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAG 235 (613)
Q Consensus 162 ~~~~~~f~dV~G~~e~k~~L~eiv~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~-----~~pfi~is~ 235 (613)
.+..++|++|.|.+.+++.|+|.|.+ |..|+.|.+++..+|+|+||+||||||||+.|+++|..+ .+.|+.-.+
T Consensus 258 ~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg 337 (1080)
T KOG0732|consen 258 VDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG 337 (1080)
T ss_pred hhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence 34567999999999999999999888 899999999999999999999999999999999999987 467888899
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCC-cccHHHHHHHHHHhhccccCCceEEEeecCCCC
Q 007190 236 SEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE-GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD 314 (613)
Q Consensus 236 s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~-~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~ 314 (613)
.+..++|+|+.++.++.+|+.|++..|+|||+||||-|.+.|+..+ .....+...||..|||...++.|+||+|||+|+
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpd 417 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPD 417 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCcc
Confidence 9999999999999999999999999999999999999998886543 344667788999999999999999999999999
Q ss_pred CCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCC--
Q 007190 315 ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGE-- 391 (613)
Q Consensus 315 ~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~-- 391 (613)
.+||+|+||||||+.++|++|+.+.|.+|+..|-.+..-. ...-+..+|+.|.||.|+||+.+|.+|++.+.++.-.
T Consensus 418 a~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~ 497 (1080)
T KOG0732|consen 418 AIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQI 497 (1080)
T ss_pred ccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCee
Confidence 9999999999999999999999999999999998776532 3334688999999999999999999999999876432
Q ss_pred --------------ccCHHHHHHHHHHHhcCCcc
Q 007190 392 --------------KLTATELEFAKDRILMGTER 411 (613)
Q Consensus 392 --------------~It~~dl~~A~~~v~~g~~~ 411 (613)
.|...||-.|+.++.+...+
T Consensus 498 y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R 531 (1080)
T KOG0732|consen 498 YSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRR 531 (1080)
T ss_pred ecccccccccchhhhhhhHhhhhhhhccCCCCCc
Confidence 36677777777777665444
No 37
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=2.8e-32 Score=290.78 Aligned_cols=246 Identities=35% Similarity=0.543 Sum_probs=210.8
Q ss_pred cccCCCCCCCCcccCCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecc
Q 007190 158 EVMPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGS 236 (613)
Q Consensus 158 ~~~~~~~~~~f~dV~G~~e~k~~L~eiv~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s 236 (613)
++....+.+.|+|+.|++.+|+.+.+.+-+ +..|+.|..+ ..+++|+||.||||||||+|++|+|.|++..|+.++++
T Consensus 142 EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSas 220 (428)
T KOG0740|consen 142 EIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISAS 220 (428)
T ss_pred HHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHH
Confidence 344555668999999999999999999988 5668888764 35678999999999999999999999999999999999
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCC-cccHHHHHHHHHHhhccc--cCCceEEEeecCCC
Q 007190 237 EFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE-GHTKKTLHQLLVEMDGFE--QNEGIILMAATNLP 313 (613)
Q Consensus 237 ~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~-~~~~~~l~~LL~~ldg~~--~~~~ViVIaaTN~p 313 (613)
.+..+|+|++++.++.+|..|+...|+|+||||+|.++.+|.... ....+...++|..+++.. .+.+|+||||||+|
T Consensus 221 sLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P 300 (428)
T KOG0740|consen 221 SLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRP 300 (428)
T ss_pred HhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCc
Confidence 999999999999999999999999999999999999998885433 334677788888888763 45689999999999
Q ss_pred CCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccC-CCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC--
Q 007190 314 DILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK-PLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGG-- 390 (613)
Q Consensus 314 ~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~-~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~-- 390 (613)
+.+|.+++| ||.+.+++|+|+.+.|..+|+..+.+. ....+.|+..|++.|+|||+.||.++|.+|++.-.+...
T Consensus 301 ~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~ 378 (428)
T KOG0740|consen 301 WELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGT 378 (428)
T ss_pred hHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccc
Confidence 999999999 999999999999999999999999876 333668899999999999999999999999874433322
Q ss_pred -----------CccCHHHHHHHHHHHh
Q 007190 391 -----------EKLTATELEFAKDRIL 406 (613)
Q Consensus 391 -----------~~It~~dl~~A~~~v~ 406 (613)
+.|+..|++.+...+.
T Consensus 379 ~~~~~~~~~~~r~i~~~df~~a~~~i~ 405 (428)
T KOG0740|consen 379 TDLEFIDADKIRPITYPDFKNAFKNIK 405 (428)
T ss_pred hhhhhcchhccCCCCcchHHHHHHhhc
Confidence 3456666666666553
No 38
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=4.1e-32 Score=288.45 Aligned_cols=269 Identities=33% Similarity=0.462 Sum_probs=218.4
Q ss_pred CCCCCcc--cCCCHHHHHHHHH--HHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCC-CeeEeecchh
Q 007190 164 NVKTFKD--VKGCDDAKQELVE--VVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV-PFFYRAGSEF 238 (613)
Q Consensus 164 ~~~~f~d--V~G~~e~k~~L~e--iv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~-pfi~is~s~~ 238 (613)
|...|++ |.|.+.--..+-+ +...+-.|+.-.++|.+.-+|+|||||||||||++||.|..-++. +--.+++.++
T Consensus 214 Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeI 293 (744)
T KOG0741|consen 214 PDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEI 293 (744)
T ss_pred CCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHH
Confidence 3456777 4566654333322 333356778888999999999999999999999999999998864 4566899999
Q ss_pred hhhhhhhhHHHHHHHHHHHHcC--------CCeEEEEcCCCccccCCccCC---cccHHHHHHHHHHhhccccCCceEEE
Q 007190 239 EEMFVGVGARRVRSLFQAAKKK--------APCIIFIDEIDAVGSTRKQWE---GHTKKTLHQLLVEMDGFEQNEGIILM 307 (613)
Q Consensus 239 ~~~~~g~~~~~vr~lf~~A~~~--------~P~ILfIDEiD~l~~~r~~~~---~~~~~~l~~LL~~ldg~~~~~~ViVI 307 (613)
..+|+|+++..+|++|..|.+. .=.||++||||+++.+|++.. +-..+++||||..|||.++-++|+||
T Consensus 294 L~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVI 373 (744)
T KOG0741|consen 294 LNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVI 373 (744)
T ss_pred HHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEE
Confidence 9999999999999999998531 124999999999999998654 34689999999999999999999999
Q ss_pred eecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhcc----CCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHH
Q 007190 308 AATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQD----KPLADDVDVKAIARGTPGFNGADLANLVNIAAI 383 (613)
Q Consensus 308 aaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~----~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~ 383 (613)
+-||+++.||.||+|||||..++++.+||+.+|.+||+.|.+. ..+..|+|+.+||.+|..|||++|+.+++.|..
T Consensus 374 GMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S 453 (744)
T KOG0741|consen 374 GMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQS 453 (744)
T ss_pred eccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999865 356789999999999999999999999998887
Q ss_pred HHHHhC---------------CCccCHHHHHHHHHHHhcCCccccccchhhhH-------------HHHHHHHhhhHHHH
Q 007190 384 KAAVDG---------------GEKLTATELEFAKDRILMGTERKTMFISEESK-------------KLTAYHESGHAIVA 435 (613)
Q Consensus 384 ~A~~~~---------------~~~It~~dl~~A~~~v~~g~~~~~~~~~~~~~-------------~~~A~hEaGhAlva 435 (613)
.|..+. .-.|+.+||..|++.+-+. ...++++. ...-..+-|.-+|.
T Consensus 454 ~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPA-----FG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~ 528 (744)
T KOG0741|consen 454 FAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPA-----FGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQ 528 (744)
T ss_pred HHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcc-----cCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHH
Confidence 775542 1258999999999977432 22333332 33445666777776
Q ss_pred Hh
Q 007190 436 FN 437 (613)
Q Consensus 436 ~~ 437 (613)
..
T Consensus 529 qv 530 (744)
T KOG0741|consen 529 QV 530 (744)
T ss_pred Hh
Confidence 54
No 39
>CHL00181 cbbX CbbX; Provisional
Probab=99.89 E-value=2.7e-22 Score=208.57 Aligned_cols=223 Identities=20% Similarity=0.309 Sum_probs=166.7
Q ss_pred CcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCC---ceEEEEccCCChHHHHHHHHHHhc-------CCCeeEeecch
Q 007190 168 FKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLP---KGILLTGAPGTGKTLLAKAIAGEA-------GVPFFYRAGSE 237 (613)
Q Consensus 168 f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p---~gvLL~GPpGTGKT~LAralA~e~-------~~pfi~is~s~ 237 (613)
+++++|++++|+++++++.++..++.+.+.|...| .++||+||||||||++|+++|+.+ ..+++++++++
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 45899999999999999988777777777776554 358999999999999999999875 23799999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCC---
Q 007190 238 FEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD--- 314 (613)
Q Consensus 238 ~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~--- 314 (613)
+...|.|..+..++.+|+.+. ++||||||+|.+...++. .......++.|+..|+.. ..+++||++++...
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~~-~~~~~e~~~~L~~~me~~--~~~~~vI~ag~~~~~~~ 175 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDNE-RDYGSEAIEILLQVMENQ--RDDLVVIFAGYKDRMDK 175 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCCc-cchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHHHHH
Confidence 999999988888888888764 359999999999654322 223467788888888853 35578888876422
Q ss_pred --CCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC--Chhc---HHHHHhc--CCCCC-HHHHHHHHHHHHHH
Q 007190 315 --ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA--DDVD---VKAIARG--TPGFN-GADLANLVNIAAIK 384 (613)
Q Consensus 315 --~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~--~d~d---l~~la~~--t~G~s-gadL~~lv~~Aa~~ 384 (613)
.++|++.+ ||+.+|.|++|+.+++.+|++.++++.... ++.. +..+.+. .+.|. +++++++++.+...
T Consensus 176 ~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~ 253 (287)
T CHL00181 176 FYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARMR 253 (287)
T ss_pred HHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHH
Confidence 34689998 999999999999999999999999765432 2221 1222222 23344 89999999888765
Q ss_pred HHHh----CCCccCHHHH
Q 007190 385 AAVD----GGEKLTATEL 398 (613)
Q Consensus 385 A~~~----~~~~It~~dl 398 (613)
-+.+ +...++.+|+
T Consensus 254 ~~~r~~~~~~~~~~~~~l 271 (287)
T CHL00181 254 QANRIFESGGRVLTKADL 271 (287)
T ss_pred HHHHHHcCCCCCCCHHHH
Confidence 4433 2334455544
No 40
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.89 E-value=7.9e-22 Score=202.59 Aligned_cols=212 Identities=21% Similarity=0.288 Sum_probs=159.1
Q ss_pred CCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCC---CceEEEEccCCChHHHHHHHHHHhc-------CCCeeEeecc
Q 007190 167 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKL---PKGILLTGAPGTGKTLLAKAIAGEA-------GVPFFYRAGS 236 (613)
Q Consensus 167 ~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~---p~gvLL~GPpGTGKT~LAralA~e~-------~~pfi~is~s 236 (613)
.+++++|++++|+.+++++.+..........|..+ +.+++|+||||||||++|+++|+.+ ..++++++++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 46889999999999999999876555555556543 3478999999999999999999864 2478899999
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCC--
Q 007190 237 EFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD-- 314 (613)
Q Consensus 237 ~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~-- 314 (613)
++...|+|.....++++|..+. ++||||||+|.|.... ........++.|+..|+.. +..+++|++++..+
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~--~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~~~~~ 156 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG--EKDFGKEAIDTLVKGMEDN--RNEFVLILAGYSDEMD 156 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC--ccchHHHHHHHHHHHHhcc--CCCEEEEecCCcchhH
Confidence 9999999999999999998874 4699999999996421 1123456788899988864 34456665554322
Q ss_pred ---CCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHh---------cCCCCCHHHHHHHHHHH
Q 007190 315 ---ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIAR---------GTPGFNGADLANLVNIA 381 (613)
Q Consensus 315 ---~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~---------~t~G~sgadL~~lv~~A 381 (613)
.++|++.+ ||+..+.||.++.+++.+|++.++...... ++..+..++. ....-+++.++|+++.|
T Consensus 157 ~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a 234 (261)
T TIGR02881 157 YFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKA 234 (261)
T ss_pred HHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHH
Confidence 36889988 999999999999999999999999865433 2222333321 11124688999999888
Q ss_pred HHHHHH
Q 007190 382 AIKAAV 387 (613)
Q Consensus 382 a~~A~~ 387 (613)
....+.
T Consensus 235 ~~~~~~ 240 (261)
T TIGR02881 235 IRRQAV 240 (261)
T ss_pred HHHHHH
Confidence 766543
No 41
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=5.2e-22 Score=210.87 Aligned_cols=207 Identities=27% Similarity=0.371 Sum_probs=163.9
Q ss_pred CCCCCCCcccCCCHHHHHHHHH-HHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhh
Q 007190 162 EKNVKTFKDVKGCDDAKQELVE-VVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 240 (613)
Q Consensus 162 ~~~~~~f~dV~G~~e~k~~L~e-iv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~ 240 (613)
-..+.+|+.|+=..+.|+++.+ +.+|++..+-|++.|..--||.|||||||||||+++.|+|+.++..++-++.++...
T Consensus 194 f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~ 273 (457)
T KOG0743|consen 194 FPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL 273 (457)
T ss_pred CCCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC
Confidence 3344799999999999999887 677789999999999999999999999999999999999999999988887766433
Q ss_pred hhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCC--------cccHHHHHHHHHHhhccccCC--ceEEEeec
Q 007190 241 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE--------GHTKKTLHQLLVEMDGFEQNE--GIILMAAT 310 (613)
Q Consensus 241 ~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~--------~~~~~~l~~LL~~ldg~~~~~--~ViVIaaT 310 (613)
. .. ++.++...... +||+|++||+-...++... ....-++..||+.+||.-+.. .-|||.||
T Consensus 274 n-----~d-Lr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTT 345 (457)
T KOG0743|consen 274 D-----SD-LRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTT 345 (457)
T ss_pred c-----HH-HHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEec
Confidence 2 22 77777666554 6999999998754332211 123468899999999987665 57888999
Q ss_pred CCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCC--CCHHHHHHHH
Q 007190 311 NLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPG--FNGADLANLV 378 (613)
Q Consensus 311 N~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G--~sgadL~~lv 378 (613)
|+++.|||||+||||+|.+|+++.-+.++-..+++.|+.... +..-+.+|.+...+ .||||+...+
T Consensus 346 Nh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 346 NHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred CChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHHH
Confidence 999999999999999999999999999999999999997643 11123333333332 6999987654
No 42
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=5.9e-22 Score=206.01 Aligned_cols=212 Identities=30% Similarity=0.461 Sum_probs=166.1
Q ss_pred CCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhhhhhhh
Q 007190 167 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVG 246 (613)
Q Consensus 167 ~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~~~g~~ 246 (613)
.|++|+-....+..++.+...-.|.+. ...+-++||||||||||||++||.||...|..+-.+.+.++... -..+
T Consensus 353 pl~~ViL~psLe~Rie~lA~aTaNTK~----h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G~qa 427 (630)
T KOG0742|consen 353 PLEGVILHPSLEKRIEDLAIATANTKK----HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-GAQA 427 (630)
T ss_pred CcCCeecCHHHHHHHHHHHHHhccccc----ccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-chHH
Confidence 499999999999999888766555443 33455899999999999999999999999999998888886442 2234
Q ss_pred HHHHHHHHHHHHcCC-CeEEEEcCCCccccCCccC--CcccHHHHHHHHHHhhccccCCceEEEeecCCCCCCChhhcCC
Q 007190 247 ARRVRSLFQAAKKKA-PCIIFIDEIDAVGSTRKQW--EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRP 323 (613)
Q Consensus 247 ~~~vr~lf~~A~~~~-P~ILfIDEiD~l~~~r~~~--~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRp 323 (613)
...+..+|+.+++.. .-+|||||.|++...|+.. +...+.+||.||-.-- ..+..++++.+||+|..+|.++-.
T Consensus 428 VTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDsAV~D- 504 (630)
T KOG0742|consen 428 VTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSAVND- 504 (630)
T ss_pred HHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhHHHHh-
Confidence 567889999998754 5689999999998777532 3345778888874322 345678899999999999999998
Q ss_pred CccceEEEccCCCHhhHHHHHHHHhccCCCC---------------------------ChhcHHHHHhcCCCCCHHHHHH
Q 007190 324 GRFDRHIVVPNPDVRGRQEILELYLQDKPLA---------------------------DDVDVKAIARGTPGFNGADLAN 376 (613)
Q Consensus 324 gRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~---------------------------~d~dl~~la~~t~G~sgadL~~ 376 (613)
|||..++||+|..++|..+|..|+.+.-.. .+.-+.+.|+.|.||||++|..
T Consensus 505 -Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiak 583 (630)
T KOG0742|consen 505 -RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAK 583 (630)
T ss_pred -hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHH
Confidence 999999999999999999999998653110 0112567899999999999999
Q ss_pred HHHHHHHHHHHhC
Q 007190 377 LVNIAAIKAAVDG 389 (613)
Q Consensus 377 lv~~Aa~~A~~~~ 389 (613)
|+ |...|+..+
T Consensus 584 Lv--a~vQAavYg 594 (630)
T KOG0742|consen 584 LV--ASVQAAVYG 594 (630)
T ss_pred HH--HHHHHHHhc
Confidence 98 444454444
No 43
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.87 E-value=5.6e-22 Score=180.45 Aligned_cols=129 Identities=44% Similarity=0.721 Sum_probs=114.7
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhhhhhhhHHHHHHHHHHHHcCC-CeEEEEcCCCccccCCc-cCCc
Q 007190 205 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKA-PCIIFIDEIDAVGSTRK-QWEG 282 (613)
Q Consensus 205 vLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~~~g~~~~~vr~lf~~A~~~~-P~ILfIDEiD~l~~~r~-~~~~ 282 (613)
|||+||||||||++|+.+|+.++.+++.++++++...+.+...+.++.+|..++... ||||||||+|.+....+ ....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 699999999999999999999999999999999998888999999999999999887 99999999999987762 2233
Q ss_pred ccHHHHHHHHHHhhccccC-CceEEEeecCCCCCCChhhcCCCccceEEEccC
Q 007190 283 HTKKTLHQLLVEMDGFEQN-EGIILMAATNLPDILDPALTRPGRFDRHIVVPN 334 (613)
Q Consensus 283 ~~~~~l~~LL~~ldg~~~~-~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~ 334 (613)
.....+++|+..++..... .+++||++||.++.++++++| +||++.|++|+
T Consensus 81 ~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 4567888999999987665 569999999999999999998 89999999874
No 44
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.87 E-value=1.4e-21 Score=203.21 Aligned_cols=212 Identities=21% Similarity=0.280 Sum_probs=164.1
Q ss_pred Cc-ccCCCHHHHHHHHHHHHHhcCchhhhhcCCCC---CceEEEEccCCChHHHHHHHHHHhcC-------CCeeEeecc
Q 007190 168 FK-DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKL---PKGILLTGAPGTGKTLLAKAIAGEAG-------VPFFYRAGS 236 (613)
Q Consensus 168 f~-dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~---p~gvLL~GPpGTGKT~LAralA~e~~-------~pfi~is~s 236 (613)
.+ +++|++++|+++.+++.++..++.+.+.|... ..++||+||||||||++|+++|+.+. .+|++++++
T Consensus 20 l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~ 99 (284)
T TIGR02880 20 LDRELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRD 99 (284)
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHH
Confidence 44 69999999999999999988888888888664 34899999999999999999988762 379999999
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCC--C
Q 007190 237 EFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP--D 314 (613)
Q Consensus 237 ~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p--~ 314 (613)
++...+.|.+...++++|+.+.. ++|||||+|.+.+.+.. .......++.|+..|+. ...+++||++++.. +
T Consensus 100 ~l~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~~-~~~~~~~~~~Ll~~le~--~~~~~~vI~a~~~~~~~ 173 (284)
T TIGR02880 100 DLVGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDNE-RDYGQEAIEILLQVMEN--QRDDLVVILAGYKDRMD 173 (284)
T ss_pred HHhHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCCc-cchHHHHHHHHHHHHhc--CCCCEEEEEeCCcHHHH
Confidence 99888999888888899988743 69999999999644321 22345677888888884 34567888887643 2
Q ss_pred ---CCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhc------CC-CCCHHHHHHHHHHHHH
Q 007190 315 ---ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARG------TP-GFNGADLANLVNIAAI 383 (613)
Q Consensus 315 ---~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~------t~-G~sgadL~~lv~~Aa~ 383 (613)
.++|++.+ ||+..|.||+++.+++..|+++++++.... ++.....+... .+ --++++++|+++.+..
T Consensus 174 ~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~ 251 (284)
T TIGR02880 174 SFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARL 251 (284)
T ss_pred HHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH
Confidence 35899999 999999999999999999999999875432 22223333332 11 1258999999998877
Q ss_pred HHHH
Q 007190 384 KAAV 387 (613)
Q Consensus 384 ~A~~ 387 (613)
..+.
T Consensus 252 ~~~~ 255 (284)
T TIGR02880 252 RQAN 255 (284)
T ss_pred HHHH
Confidence 6554
No 45
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.86 E-value=4.8e-21 Score=214.91 Aligned_cols=265 Identities=20% Similarity=0.304 Sum_probs=177.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCcccccccccCCCCCCCCcccCCCHHHHHHHHHHHHHh
Q 007190 109 ISTILFTVAVGLVWLMGAAALQKYIGSLGGIGTSGVGSSSSYAPKELNKEVMPEKNVKTFKDVKGCDDAKQELVEVVEYL 188 (613)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~dV~G~~e~k~~L~eiv~~l 188 (613)
+..++|.+++|++||...+..+..................++....++.++....++.+|++++|++++++.++..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~-- 82 (531)
T TIGR02902 5 IVQIIFLIIIGLYFFNALKNQQTNKITIDKESKKELEKLNKMRAIRLTEPLSEKTRPKSFDEIIGQEEGIKALKAALC-- 82 (531)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcCCeeeeehhhhHHHHHHHHhhhhhhcchHHHhhCcCCHHHeeCcHHHHHHHHHHHh--
Confidence 345667788888888766554322111111111111222233334556677777888999999999999888875431
Q ss_pred cCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc----------CCCeeEeecchh-------hhhhhhhhH----
Q 007190 189 KNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFYRAGSEF-------EEMFVGVGA---- 247 (613)
Q Consensus 189 ~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~----------~~pfi~is~s~~-------~~~~~g~~~---- 247 (613)
...|.++||+||||||||++|+++++.+ +.||+.++|... .+...+...
T Consensus 83 ----------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~ 152 (531)
T TIGR02902 83 ----------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIY 152 (531)
T ss_pred ----------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchh
Confidence 2235689999999999999999998753 368999998631 111111000
Q ss_pred ------------HHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccc----------------
Q 007190 248 ------------RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------------- 299 (613)
Q Consensus 248 ------------~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~---------------- 299 (613)
......+..+ ...+|||||+|.+. ...++.|+..|+.-.
T Consensus 153 ~~~~~~g~~g~~~~~~G~l~~a---~gG~L~IdEI~~L~----------~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~ 219 (531)
T TIGR02902 153 QGAGPLGIAGIPQPKPGAVTRA---HGGVLFIDEIGELH----------PVQMNKLLKVLEDRKVFLDSAYYNSENPNIP 219 (531)
T ss_pred ccccccccCCcccccCchhhcc---CCcEEEEechhhCC----------HHHHHHHHHHHHhCeeeeccccccccCcccc
Confidence 0001122222 23599999999992 345566666554210
Q ss_pred ----------cCCc-eEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCC
Q 007190 300 ----------QNEG-IILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTP 367 (613)
Q Consensus 300 ----------~~~~-ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~ 367 (613)
.... .++++|||.|+.|+|++++ |+ ..+.+++++.+++.+|++.++++.... ++..++.++..+
T Consensus 220 ~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~-~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~- 295 (531)
T TIGR02902 220 SHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RC-VEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYA- 295 (531)
T ss_pred cchhhhcccCcccceEEEEEecCCcccCChHHhh--hh-heeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhh-
Confidence 0112 3445666789999999998 88 478899999999999999999876544 344466677665
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 007190 368 GFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKD 403 (613)
Q Consensus 368 G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A~~ 403 (613)
++++++.++++.|+..|..+++..|+.+|+++++.
T Consensus 296 -~n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 296 -SNGREAVNIVQLAAGIALGEGRKRILAEDIEWVAE 330 (531)
T ss_pred -hhHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhC
Confidence 48999999999999988888888999999999975
No 46
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.84 E-value=1.3e-19 Score=192.14 Aligned_cols=216 Identities=25% Similarity=0.310 Sum_probs=163.9
Q ss_pred CCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhh
Q 007190 162 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM 241 (613)
Q Consensus 162 ~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~ 241 (613)
...+.+|++++|.++.++.+..++...+.+ ..+|.++|||||||||||++|+++|++++.++..++++.+..
T Consensus 18 ~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~- 89 (328)
T PRK00080 18 SLRPKSLDEFIGQEKVKENLKIFIEAAKKR-------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK- 89 (328)
T ss_pred hcCcCCHHHhcCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC-
Confidence 344578999999999999999888654332 345678999999999999999999999999988877664322
Q ss_pred hhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccc----------------cCCceE
Q 007190 242 FVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE----------------QNEGII 305 (613)
Q Consensus 242 ~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~----------------~~~~Vi 305 (613)
...+..++... ..+++|||||||.+... .... +...|+.+. .-.++.
T Consensus 90 -----~~~l~~~l~~l--~~~~vl~IDEi~~l~~~-------~~e~---l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~ 152 (328)
T PRK00080 90 -----PGDLAAILTNL--EEGDVLFIDEIHRLSPV-------VEEI---LYPAMEDFRLDIMIGKGPAARSIRLDLPPFT 152 (328)
T ss_pred -----hHHHHHHHHhc--ccCCEEEEecHhhcchH-------HHHH---HHHHHHhcceeeeeccCccccceeecCCCce
Confidence 12334444433 34679999999998421 1222 333343321 113478
Q ss_pred EEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 007190 306 LMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIK 384 (613)
Q Consensus 306 VIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~lv~~Aa~~ 384 (613)
+|++||++..++++|++ ||...+.+++|+.+++.+|++..+...... ++..+..|++.+.| +++.+.++++.+...
T Consensus 153 li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~~~l~~~~~~ 229 (328)
T PRK00080 153 LIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIANRLLRRVRDF 229 (328)
T ss_pred EEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHHHHHHHHHHH
Confidence 89999999999999988 999999999999999999999988776554 34447889998887 668899999988877
Q ss_pred HHHhCCCccCHHHHHHHHHHH
Q 007190 385 AAVDGGEKLTATELEFAKDRI 405 (613)
Q Consensus 385 A~~~~~~~It~~dl~~A~~~v 405 (613)
+...+...|+.+++..+++.+
T Consensus 230 a~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 230 AQVKGDGVITKEIADKALDML 250 (328)
T ss_pred HHHcCCCCCCHHHHHHHHHHh
Confidence 777777789999999998764
No 47
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.84 E-value=1.2e-19 Score=179.26 Aligned_cols=193 Identities=25% Similarity=0.305 Sum_probs=132.5
Q ss_pred CCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhh
Q 007190 162 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM 241 (613)
Q Consensus 162 ~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~ 241 (613)
.-++.+|+|++|+++++..++-++...+.. .....++|||||||+|||+||+.+|++++.+|...+++.+..
T Consensus 17 ~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r-------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k- 88 (233)
T PF05496_consen 17 RLRPKSLDEFIGQEHLKGNLKILIRAAKKR-------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK- 88 (233)
T ss_dssp HTS-SSCCCS-S-HHHHHHHHHHHHHHHCT-------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S-
T ss_pred hcCCCCHHHccCcHHHHhhhHHHHHHHHhc-------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh-
Confidence 345679999999999999998877654322 123348999999999999999999999999999998865432
Q ss_pred hhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhcccc----------------CCceE
Q 007190 242 FVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQ----------------NEGII 305 (613)
Q Consensus 242 ~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~----------------~~~Vi 305 (613)
...+..++..... ..||||||||.+. ......|+..|+++.- -..+.
T Consensus 89 -----~~dl~~il~~l~~--~~ILFIDEIHRln----------k~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 89 -----AGDLAAILTNLKE--GDILFIDEIHRLN----------KAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp -----CHHHHHHHHT--T--T-EEEECTCCC------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred -----HHHHHHHHHhcCC--CcEEEEechhhcc----------HHHHHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 1223344444433 4699999999992 3344566777776421 12488
Q ss_pred EEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCC-hhcHHHHHhcCCCCCHHHHHHHHHHHH
Q 007190 306 LMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLAD-DVDVKAIARGTPGFNGADLANLVNIAA 382 (613)
Q Consensus 306 VIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~-d~dl~~la~~t~G~sgadL~~lv~~Aa 382 (613)
+|+||++...|.+.|+. ||.....+..++.++..+|++.......+.- +.....||+++.| +|+-..++++++.
T Consensus 152 ligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~rvr 226 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRRVR 226 (233)
T ss_dssp EEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHHHC
T ss_pred EeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHH
Confidence 99999999999999998 9999999999999999999998887766653 3347889999987 7887777776553
No 48
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.83 E-value=1.7e-19 Score=188.95 Aligned_cols=211 Identities=24% Similarity=0.266 Sum_probs=157.7
Q ss_pred CCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhhhhhh
Q 007190 166 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGV 245 (613)
Q Consensus 166 ~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~~~g~ 245 (613)
.+|+|++|+++.++.|..++...+.. ...|.+++|+||||||||++|+++|++++.++..++++....
T Consensus 1 ~~~~~~iG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~----- 68 (305)
T TIGR00635 1 KLLAEFIGQEKVKEQLQLFIEAAKMR-------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK----- 68 (305)
T ss_pred CCHHHHcCHHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----
Confidence 37999999999999998877543321 234568999999999999999999999999887766543321
Q ss_pred hHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccc----------------cCCceEEEee
Q 007190 246 GARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE----------------QNEGIILMAA 309 (613)
Q Consensus 246 ~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~----------------~~~~ViVIaa 309 (613)
...+...+... ..+.+|||||+|.+... ....|+..|+... ...++++|++
T Consensus 69 -~~~l~~~l~~~--~~~~vl~iDEi~~l~~~----------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~ 135 (305)
T TIGR00635 69 -PGDLAAILTNL--EEGDVLFIDEIHRLSPA----------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGA 135 (305)
T ss_pred -chhHHHHHHhc--ccCCEEEEehHhhhCHH----------HHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEe
Confidence 11222333322 34579999999998432 2233444443322 1234789999
Q ss_pred cCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 007190 310 TNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVD 388 (613)
Q Consensus 310 TN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~ 388 (613)
||++..+++++++ ||...+.+++|+.+++.++++..+...... ++..+..+++.+.| +++.+.++++.+...|...
T Consensus 136 t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G-~pR~~~~ll~~~~~~a~~~ 212 (305)
T TIGR00635 136 TTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRG-TPRIANRLLRRVRDFAQVR 212 (305)
T ss_pred cCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC-CcchHHHHHHHHHHHHHHc
Confidence 9999999999988 998899999999999999999988765443 34457789998887 5688889999887777777
Q ss_pred CCCccCHHHHHHHHHH
Q 007190 389 GGEKLTATELEFAKDR 404 (613)
Q Consensus 389 ~~~~It~~dl~~A~~~ 404 (613)
+...|+.+++..+++.
T Consensus 213 ~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 213 GQKIINRDIALKALEM 228 (305)
T ss_pred CCCCcCHHHHHHHHHH
Confidence 7778999999999887
No 49
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=6.5e-19 Score=195.28 Aligned_cols=231 Identities=27% Similarity=0.413 Sum_probs=181.3
Q ss_pred CCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhhhhhhh
Q 007190 167 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVG 246 (613)
Q Consensus 167 ~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~~~g~~ 246 (613)
.|-...+.+.... +++..+.-+..-...+.+.--.+||+|+||||||++++++|.++|.+++.++|.++...-.+..
T Consensus 399 n~~~~~~~~~~~~---~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~ 475 (953)
T KOG0736|consen 399 NSLSPPGLEAKVL---ELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHT 475 (953)
T ss_pred ccCCCccchHHHH---HHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchh
Confidence 3444455555544 3333333222222223344457999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCccc---HHHHHHHHHHhhccc-cCCceEEEeecCCCCCCChhhcC
Q 007190 247 ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHT---KKTLHQLLVEMDGFE-QNEGIILMAATNLPDILDPALTR 322 (613)
Q Consensus 247 ~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~---~~~l~~LL~~ldg~~-~~~~ViVIaaTN~p~~Ld~aLlR 322 (613)
+..+...|..|+...|+|||+-++|.++..++. ++. .+.++.++. .|.+. +..+++||++|+..+.+++.+++
T Consensus 476 etkl~~~f~~a~~~~pavifl~~~dvl~id~dg--ged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~ 552 (953)
T KOG0736|consen 476 ETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG--GEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQS 552 (953)
T ss_pred HHHHHHHHHHHhhcCceEEEEeccceeeecCCC--chhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCCHHHHH
Confidence 899999999999999999999999999855443 333 344445554 34443 56789999999999999999998
Q ss_pred CCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHH---HHhCC---------
Q 007190 323 PGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKA---AVDGG--------- 390 (613)
Q Consensus 323 pgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A---~~~~~--------- 390 (613)
-|-..|.++.|+.++|.+||+.|+....+..++.+..++++|+||+.+|+..++..+-..+ ..+..
T Consensus 553 --~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~ 630 (953)
T KOG0736|consen 553 --LFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEED 630 (953)
T ss_pred --hhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhcc
Confidence 7878999999999999999999999999999999999999999999999999886662211 11111
Q ss_pred --------CccCHHHHHHHHHHH
Q 007190 391 --------EKLTATELEFAKDRI 405 (613)
Q Consensus 391 --------~~It~~dl~~A~~~v 405 (613)
..++++||..|+++.
T Consensus 631 ~~~~~~~~~~l~~edf~kals~~ 653 (953)
T KOG0736|consen 631 EGELCAAGFLLTEEDFDKALSRL 653 (953)
T ss_pred ccccccccceecHHHHHHHHHHH
Confidence 468999999999875
No 50
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.7e-19 Score=182.09 Aligned_cols=242 Identities=21% Similarity=0.270 Sum_probs=176.6
Q ss_pred cccCCCCCC-CCcccCCCHHHHHHHHHHHHH-hcCchhhhhc-CCCCCceEEEEccCCChHHHHHHHHHHhcC-------
Q 007190 158 EVMPEKNVK-TFKDVKGCDDAKQELVEVVEY-LKNPSKFTRL-GGKLPKGILLTGAPGTGKTLLAKAIAGEAG------- 227 (613)
Q Consensus 158 ~~~~~~~~~-~f~dV~G~~e~k~~L~eiv~~-l~~p~~~~~l-g~~~p~gvLL~GPpGTGKT~LAralA~e~~------- 227 (613)
++.|..... -|+.++--...|++|...+.. ++..++-..- -....+-+||+||||||||+|+||+|+.+.
T Consensus 130 w~LPa~eF~glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y 209 (423)
T KOG0744|consen 130 WYLPAAEFDGLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRY 209 (423)
T ss_pred eeccchhhhhhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCcc
Confidence 344443332 388888888999998875543 3332221110 012346799999999999999999999774
Q ss_pred --CCeeEeecchhhhhhhhhhHHHHHHHHHHHHcC---CCe--EEEEcCCCccccCCcc-----CCcccHHHHHHHHHHh
Q 007190 228 --VPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKK---APC--IIFIDEIDAVGSTRKQ-----WEGHTKKTLHQLLVEM 295 (613)
Q Consensus 228 --~pfi~is~s~~~~~~~g~~~~~vr~lf~~A~~~---~P~--ILfIDEiD~l~~~r~~-----~~~~~~~~l~~LL~~l 295 (613)
..++++++..+.++|.+++.+.+..+|.+.... ..+ .++|||+++++..|.. .+...-+++|.+|.+|
T Consensus 210 ~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQl 289 (423)
T KOG0744|consen 210 YKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQL 289 (423)
T ss_pred ccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHH
Confidence 357899999999999999999999999987542 223 5669999999877632 1234578999999999
Q ss_pred hccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCC-------------CCChhc----
Q 007190 296 DGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKP-------------LADDVD---- 358 (613)
Q Consensus 296 dg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~-------------l~~d~d---- 358 (613)
|..+...+|++++|+|-.+.||.|+.. |-|-+.++++|+...+.+|++.++.+.- ......
T Consensus 290 DrlK~~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~ 367 (423)
T KOG0744|consen 290 DRLKRYPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKA 367 (423)
T ss_pred HHhccCCCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHh
Confidence 999999999999999999999999998 9999999999999999999999875320 001111
Q ss_pred -HHHHHh-cCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 007190 359 -VKAIAR-GTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKD 403 (613)
Q Consensus 359 -l~~la~-~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A~~ 403 (613)
...+.. .+.|.||+-|+.+=--|. |..-....|+.+++-.|+-
T Consensus 368 ~~~~~~~~~~~gLSGRtlrkLP~Lah--a~y~~~~~v~~~~fl~al~ 412 (423)
T KOG0744|consen 368 LRNILIELSTVGLSGRTLRKLPLLAH--AEYFRTFTVDLSNFLLALL 412 (423)
T ss_pred HHHHHHHHhhcCCccchHhhhhHHHH--HhccCCCccChHHHHHHHH
Confidence 122222 258999999988753332 2222335788888876643
No 51
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=4e-18 Score=190.48 Aligned_cols=218 Identities=44% Similarity=0.634 Sum_probs=197.0
Q ss_pred hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhhhhhhhHHHHHHHHHHHHcCCCeEEEE
Q 007190 188 LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFI 267 (613)
Q Consensus 188 l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfI 267 (613)
+..+..|..++..+|++++++||||||||++++++|.+ +..++.+++.+...++.|......+.+|..++...|+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 45667788899999999999999999999999999999 76668889999999999999999999999999999999999
Q ss_pred cCCCccccCCccC-CcccHHHHHHHHHHhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHH
Q 007190 268 DEIDAVGSTRKQW-EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILEL 346 (613)
Q Consensus 268 DEiD~l~~~r~~~-~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~ 346 (613)
||+|.+.+.+... .........+++..++++.... +++++.||++..+|+++++||||++.+.++.|+...+.+|+..
T Consensus 83 d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~~ 161 (494)
T COG0464 83 DEIDALAPKRSSDQGEVERRVVAQLLALMDGLKRGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQI 161 (494)
T ss_pred chhhhcccCccccccchhhHHHHHHHHhcccccCCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHHHH
Confidence 9999998888762 3345778899999999998444 9999999999999999999999999999999999999999999
Q ss_pred HhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC------CCccCHHHHHHHHHHHhc
Q 007190 347 YLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDG------GEKLTATELEFAKDRILM 407 (613)
Q Consensus 347 ~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~------~~~It~~dl~~A~~~v~~ 407 (613)
+........+.++..++..+.|++++++..++..+...+.++. ...++.+++.++++++..
T Consensus 162 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (494)
T COG0464 162 HTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLP 228 (494)
T ss_pred HHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCc
Confidence 9988888888899999999999999999999999998888875 345789999999998755
No 52
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=4.4e-18 Score=185.82 Aligned_cols=208 Identities=19% Similarity=0.242 Sum_probs=156.3
Q ss_pred cccCCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCC--------
Q 007190 158 EVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP-------- 229 (613)
Q Consensus 158 ~~~~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~p-------- 229 (613)
++....++.+|+||+|++.+...|+..+. ..+.|..+||+||||||||++|+.+|+.+++.
T Consensus 7 ~L~~KyRP~~f~dvVGQe~iv~~L~~~i~-----------~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pC 75 (484)
T PRK14956 7 VLSRKYRPQFFRDVIHQDLAIGALQNALK-----------SGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPC 75 (484)
T ss_pred hhHHHhCCCCHHHHhChHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCcccc
Confidence 34445677899999999999998888775 24567789999999999999999999988763
Q ss_pred ----------------eeEeecchhhhhhhhhhHHHHHHHHHHHH----cCCCeEEEEcCCCccccCCccCCcccHHHHH
Q 007190 230 ----------------FFYRAGSEFEEMFVGVGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLH 289 (613)
Q Consensus 230 ----------------fi~is~s~~~~~~~g~~~~~vr~lf~~A~----~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~ 289 (613)
++.++++ ...+...++++.+.+. .....|+||||+|.+ ....+|
T Consensus 76 g~C~sC~~i~~g~~~dviEIdaa------s~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~L----------s~~A~N 139 (484)
T PRK14956 76 NECTSCLEITKGISSDVLEIDAA------SNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHML----------TDQSFN 139 (484)
T ss_pred CCCcHHHHHHccCCccceeechh------hcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhc----------CHHHHH
Confidence 2222211 1112344555554443 334569999999999 346789
Q ss_pred HHHHHhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCC
Q 007190 290 QLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPG 368 (613)
Q Consensus 290 ~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G 368 (613)
.||..|+. +...+++|.+|+.++.|.+.+++ |+ .++.|..++.++..+.++..+...++. ++..+..|++.+.|
T Consensus 140 ALLKtLEE--Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G 214 (484)
T PRK14956 140 ALLKTLEE--PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG 214 (484)
T ss_pred HHHHHhhc--CCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 99999984 55678999999999999999998 88 578899999888889999988766554 45568889998887
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 007190 369 FNGADLANLVNIAAIKAAVDGGEKLTATELEFAK 402 (613)
Q Consensus 369 ~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A~ 402 (613)
+.++..++++++... ....||.+++...+
T Consensus 215 -d~RdAL~lLeq~i~~----~~~~it~~~V~~~l 243 (484)
T PRK14956 215 -SVRDMLSFMEQAIVF----TDSKLTGVKIRKMI 243 (484)
T ss_pred -hHHHHHHHHHHHHHh----CCCCcCHHHHHHHh
Confidence 788888888876532 23468888886554
No 53
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=3.7e-18 Score=187.78 Aligned_cols=258 Identities=23% Similarity=0.253 Sum_probs=188.5
Q ss_pred cccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCC----CeeEeecchhhhhhhh
Q 007190 169 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV----PFFYRAGSEFEEMFVG 244 (613)
Q Consensus 169 ~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~----pfi~is~s~~~~~~~g 244 (613)
.|++-...+|++..+ ..-.| .-.+.++||+||+|+|||.|+++++.++.. .+..++|+.+...-..
T Consensus 408 ~d~i~~~s~kke~~n---~~~sp-------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e 477 (952)
T KOG0735|consen 408 HDFIQVPSYKKENAN---QELSP-------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLE 477 (952)
T ss_pred Cceeecchhhhhhhh---hhccc-------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHH
Confidence 345555566655544 22222 233458999999999999999999998854 4667899998776677
Q ss_pred hhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCC---cccHHHHHHHHHH-hhcc-ccCCceEEEeecCCCCCCChh
Q 007190 245 VGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE---GHTKKTLHQLLVE-MDGF-EQNEGIILMAATNLPDILDPA 319 (613)
Q Consensus 245 ~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~---~~~~~~l~~LL~~-ldg~-~~~~~ViVIaaTN~p~~Ld~a 319 (613)
...+.++.+|..|.+++|+||++|++|.+.+..+..+ +...+.++.++.. ++.| ..+..+.||++.+....|+|-
T Consensus 478 ~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~ 557 (952)
T KOG0735|consen 478 KIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPL 557 (952)
T ss_pred HHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChh
Confidence 7788899999999999999999999999987433222 2223444444432 2223 345557999999999999999
Q ss_pred hcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh----CCCccC
Q 007190 320 LTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVD----GGEKLT 394 (613)
Q Consensus 320 LlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~----~~~~It 394 (613)
|.+|++|+.++.+|.|+..+|.+||++.+++.... ...|++.++..|+||...|+.-++.+|...|... +.+-+|
T Consensus 558 L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~kllt 637 (952)
T KOG0735|consen 558 LVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLT 637 (952)
T ss_pred hcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccch
Confidence 99999999999999999999999999999876532 2334566999999999999999999998877732 233789
Q ss_pred HHHHHHHHHHHhcCCccccc-cchh--hhHHHHHHHHhhhHHHHH
Q 007190 395 ATELEFAKDRILMGTERKTM-FISE--ESKKLTAYHESGHAIVAF 436 (613)
Q Consensus 395 ~~dl~~A~~~v~~g~~~~~~-~~~~--~~~~~~A~hEaGhAlva~ 436 (613)
.++|.+++....+-.-+.-. .-+. ..-.+-..||+-.++...
T Consensus 638 ke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~~l~~~ 682 (952)
T KOG0735|consen 638 KELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFEAKKVLEEV 682 (952)
T ss_pred HHHHHHHHHhcChHHhhhccccccCCCCceecccHHHHHHHHHHH
Confidence 99999999887553322110 0011 112455678888777654
No 54
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.79 E-value=5.4e-18 Score=170.57 Aligned_cols=215 Identities=24% Similarity=0.291 Sum_probs=170.1
Q ss_pred CCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhhh
Q 007190 163 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMF 242 (613)
Q Consensus 163 ~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~~ 242 (613)
-++.+|+|.+|++++|+.|+-++..-+.. ....-++|||||||.|||+||..+|+|+|+.+-..++.-+...
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AAk~r-------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~- 91 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAAKKR-------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKP- 91 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHHHHhc-------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccCh-
Confidence 34678999999999999999888754432 3345689999999999999999999999999999888766442
Q ss_pred hhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccc--------c--------CCceEE
Q 007190 243 VGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE--------Q--------NEGIIL 306 (613)
Q Consensus 243 ~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~--------~--------~~~ViV 306 (613)
..+-.++.....+ +|+||||||.+.+. .+.. |...|+.|. + -..+-+
T Consensus 92 -----gDlaaiLt~Le~~--DVLFIDEIHrl~~~-------vEE~---LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTL 154 (332)
T COG2255 92 -----GDLAAILTNLEEG--DVLFIDEIHRLSPA-------VEEV---LYPAMEDFRLDIIIGKGPAARSIRLDLPPFTL 154 (332)
T ss_pred -----hhHHHHHhcCCcC--CeEEEehhhhcChh-------HHHH---hhhhhhheeEEEEEccCCccceEeccCCCeeE
Confidence 2344444444444 69999999999442 2333 334455542 1 134789
Q ss_pred EeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCC-hhcHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 007190 307 MAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLAD-DVDVKAIARGTPGFNGADLANLVNIAAIKA 385 (613)
Q Consensus 307 IaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~-d~dl~~la~~t~G~sgadL~~lv~~Aa~~A 385 (613)
||||.+...|...|+. ||.....+..++.++..+|++...+...+.- +.....||+++.| +++=...++++....|
T Consensus 155 IGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRVRDfa 231 (332)
T COG2255 155 IGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRVRDFA 231 (332)
T ss_pred eeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHHHHHH
Confidence 9999999999999998 9999999999999999999999887766553 3346789998887 7888888999999999
Q ss_pred HHhCCCccCHHHHHHHHHHH
Q 007190 386 AVDGGEKLTATELEFAKDRI 405 (613)
Q Consensus 386 ~~~~~~~It~~dl~~A~~~v 405 (613)
..++...|+.+-...|++..
T Consensus 232 ~V~~~~~I~~~ia~~aL~~L 251 (332)
T COG2255 232 QVKGDGDIDRDIADKALKML 251 (332)
T ss_pred HHhcCCcccHHHHHHHHHHh
Confidence 99999999999888888765
No 55
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.78 E-value=2.7e-18 Score=191.70 Aligned_cols=203 Identities=17% Similarity=0.250 Sum_probs=153.3
Q ss_pred CCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCC-----------
Q 007190 161 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP----------- 229 (613)
Q Consensus 161 ~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~p----------- 229 (613)
.++.+.+|+||+|++++++.|++.+. ..+.|+.+||+||+|||||++|+.+|+.+++.
T Consensus 8 rKYRPqtFddVIGQe~vv~~L~~al~-----------~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~ 76 (700)
T PRK12323 8 RKWRPRDFTTLVGQEHVVRALTHALE-----------QQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQ 76 (700)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHH-----------hCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCC
Confidence 34567899999999999999988875 35677889999999999999999999998761
Q ss_pred ------------------eeEeecchhhhhhhhhhHHHHHHHHHHHH----cCCCeEEEEcCCCccccCCccCCcccHHH
Q 007190 230 ------------------FFYRAGSEFEEMFVGVGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWEGHTKKT 287 (613)
Q Consensus 230 ------------------fi~is~s~~~~~~~g~~~~~vr~lf~~A~----~~~P~ILfIDEiD~l~~~r~~~~~~~~~~ 287 (613)
+++++.++ ..+...++++.+.+. .....|+||||+|.| ....
T Consensus 77 PCG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~L----------s~~A 140 (700)
T PRK12323 77 PCGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHML----------TNHA 140 (700)
T ss_pred CCcccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhc----------CHHH
Confidence 12222111 122344566655543 234579999999999 3467
Q ss_pred HHHHHHHhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCC-hhcHHHHHhcC
Q 007190 288 LHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLAD-DVDVKAIARGT 366 (613)
Q Consensus 288 l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~-d~dl~~la~~t 366 (613)
.|.||+.|+. ...++++|.+||.++.|.+.+++ |+ .++.|+.++.++..+.|+..+.+.++.. +..+..|++.+
T Consensus 141 aNALLKTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A 215 (700)
T PRK12323 141 FNAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAA 215 (700)
T ss_pred HHHHHHhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 8999999984 55678888899999999999998 88 7889999999999999998887665543 33467788888
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 007190 367 PGFNGADLANLVNIAAIKAAVDGGEKLTATELEF 400 (613)
Q Consensus 367 ~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~ 400 (613)
.| +.++..++++++.. .+...|+.+++..
T Consensus 216 ~G-s~RdALsLLdQaia----~~~~~It~~~V~~ 244 (700)
T PRK12323 216 QG-SMRDALSLTDQAIA----YSAGNVSEEAVRG 244 (700)
T ss_pred CC-CHHHHHHHHHHHHH----hccCCcCHHHHHH
Confidence 76 88888888877653 2334577666544
No 56
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.78 E-value=9.9e-18 Score=175.82 Aligned_cols=206 Identities=30% Similarity=0.402 Sum_probs=143.4
Q ss_pred CCCCCCCCcccCCCHHHHHH---HHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecch
Q 007190 161 PEKNVKTFKDVKGCDDAKQE---LVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE 237 (613)
Q Consensus 161 ~~~~~~~f~dV~G~~e~k~~---L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~ 237 (613)
..-++.+|+|++|+++...+ |+++++ .+.. .+++||||||||||++|+.||+..+.+|..+|+..
T Consensus 16 ~rmRP~~lde~vGQ~HLlg~~~~lrr~v~-----------~~~l-~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~ 83 (436)
T COG2256 16 ERLRPKSLDEVVGQEHLLGEGKPLRRAVE-----------AGHL-HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT 83 (436)
T ss_pred HHhCCCCHHHhcChHhhhCCCchHHHHHh-----------cCCC-ceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc
Confidence 34456799999999987533 333332 1223 37999999999999999999999999999998743
Q ss_pred hhhhhhhhhHHHHHHHHHHHHcCC----CeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeec--C
Q 007190 238 FEEMFVGVGARRVRSLFQAAKKKA----PCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAAT--N 311 (613)
Q Consensus 238 ~~~~~~g~~~~~vr~lf~~A~~~~----P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaT--N 311 (613)
.+.+.++.+++.|++.. ..|||||||+.+-. .....||-.++ +..|++|||| |
T Consensus 84 -------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK----------~QQD~lLp~vE----~G~iilIGATTEN 142 (436)
T COG2256 84 -------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNK----------AQQDALLPHVE----NGTIILIGATTEN 142 (436)
T ss_pred -------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcCh----------hhhhhhhhhhc----CCeEEEEeccCCC
Confidence 34567899999986432 47999999999933 23345666665 5678888876 3
Q ss_pred CCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhcc--CCCC------ChhcHHHHHhcCCCCCHHHHHHHHHHHHH
Q 007190 312 LPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQD--KPLA------DDVDVKAIARGTPGFNGADLANLVNIAAI 383 (613)
Q Consensus 312 ~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~--~~l~------~d~dl~~la~~t~G~sgadL~~lv~~Aa~ 383 (613)
..-.|.+||++ |. +++.+.+.+.++...+++.-+.. ..+. ++..+..++..+.| |.+.++|..-+
T Consensus 143 PsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G----D~R~aLN~LE~ 215 (436)
T COG2256 143 PSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG----DARRALNLLEL 215 (436)
T ss_pred CCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc----hHHHHHHHHHH
Confidence 44589999998 77 78899999999999999884422 2222 34456778887766 55555543332
Q ss_pred HHHHhC-CCccCHHHHHHHHHHHh
Q 007190 384 KAAVDG-GEKLTATELEFAKDRIL 406 (613)
Q Consensus 384 ~A~~~~-~~~It~~dl~~A~~~v~ 406 (613)
.+.... .+.++.+++++.+.+..
T Consensus 216 ~~~~~~~~~~~~~~~l~~~l~~~~ 239 (436)
T COG2256 216 AALSAEPDEVLILELLEEILQRRS 239 (436)
T ss_pred HHHhcCCCcccCHHHHHHHHhhhh
Confidence 222221 22445788887776643
No 57
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.77 E-value=5e-18 Score=197.66 Aligned_cols=224 Identities=18% Similarity=0.268 Sum_probs=164.4
Q ss_pred CCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc----------CCCeeE
Q 007190 163 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFY 232 (613)
Q Consensus 163 ~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~----------~~pfi~ 232 (613)
-...++++++|.++....+.+++. .+...+++|+||||||||++|+++|.++ +..++.
T Consensus 176 ~r~~~l~~~igr~~ei~~~~~~L~------------~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~ 243 (731)
T TIGR02639 176 AKNGKIDPLIGREDELERTIQVLC------------RRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS 243 (731)
T ss_pred HhcCCCCcccCcHHHHHHHHHHHh------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE
Confidence 345689999999988766554442 2233589999999999999999999987 677889
Q ss_pred eecchhh--hhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeec
Q 007190 233 RAGSEFE--EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAAT 310 (613)
Q Consensus 233 is~s~~~--~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaT 310 (613)
++++.+. ..|.|..+++++.+|+.++...|+||||||+|.+.+.+....+ .....+.|...+. +..+.+|++|
T Consensus 244 ~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~-~~~~~~~L~~~l~----~g~i~~IgaT 318 (731)
T TIGR02639 244 LDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGG-SMDASNLLKPALS----SGKLRCIGST 318 (731)
T ss_pred ecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCc-cHHHHHHHHHHHh----CCCeEEEEec
Confidence 9988886 4688999999999999998888999999999999765432222 1222333444443 5679999999
Q ss_pred CCCC-----CCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccC----CC-CChhcHHHHHhcCCCCC-----HHHHH
Q 007190 311 NLPD-----ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK----PL-ADDVDVKAIARGTPGFN-----GADLA 375 (613)
Q Consensus 311 N~p~-----~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~----~l-~~d~dl~~la~~t~G~s-----gadL~ 375 (613)
|..+ .+|+++.| ||+ .|.++.|+.+++.+||+...... .+ -.+..+..++..+..|- |....
T Consensus 319 t~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai 395 (731)
T TIGR02639 319 TYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAI 395 (731)
T ss_pred CHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHH
Confidence 9643 57999999 996 79999999999999999766432 11 24555666776665543 34445
Q ss_pred HHHHHHHHHHHHh----CCCccCHHHHHHHHHHHh
Q 007190 376 NLVNIAAIKAAVD----GGEKLTATELEFAKDRIL 406 (613)
Q Consensus 376 ~lv~~Aa~~A~~~----~~~~It~~dl~~A~~~v~ 406 (613)
.++++|+.....+ ....|+.+|+..++.+..
T Consensus 396 ~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~t 430 (731)
T TIGR02639 396 DVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMA 430 (731)
T ss_pred HHHHHhhhhhhcCcccccccccCHHHHHHHHHHHh
Confidence 6777766543322 234599999999998753
No 58
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.77 E-value=7.8e-18 Score=190.15 Aligned_cols=203 Identities=20% Similarity=0.291 Sum_probs=153.3
Q ss_pred CCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCC-----------
Q 007190 161 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP----------- 229 (613)
Q Consensus 161 ~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~p----------- 229 (613)
.++++.+|+||+|++++++.|+..+. ..++++.+||+||+|||||++|+++|+.+++.
T Consensus 8 rKYRPqtFdEVIGQe~Vv~~L~~aL~-----------~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C 76 (830)
T PRK07003 8 RKWRPKDFASLVGQEHVVRALTHALD-----------GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVC 76 (830)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHh-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCccc
Confidence 45567899999999999999988775 35677789999999999999999999988752
Q ss_pred -------------eeEeecchhhhhhhhhhHHHHHHHHHHHHc----CCCeEEEEcCCCccccCCccCCcccHHHHHHHH
Q 007190 230 -------------FFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLL 292 (613)
Q Consensus 230 -------------fi~is~s~~~~~~~g~~~~~vr~lf~~A~~----~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL 292 (613)
+++++.++ ..+...++++++.+.. ....|+||||+|.| .....|.||
T Consensus 77 ~sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~L----------T~~A~NALL 140 (830)
T PRK07003 77 RACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHML----------TNHAFNAML 140 (830)
T ss_pred HHHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhC----------CHHHHHHHH
Confidence 22222211 1223456666665542 23469999999999 345688999
Q ss_pred HHhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCH
Q 007190 293 VEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNG 371 (613)
Q Consensus 293 ~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sg 371 (613)
+.|+. ...+++||.+||.++.|.+.+++ || .++.|..++.++..++|+..+.+.++. ++..+..|++.+.| +.
T Consensus 141 KtLEE--PP~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G-sm 214 (830)
T PRK07003 141 KTLEE--PPPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQG-SM 214 (830)
T ss_pred HHHHh--cCCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 99984 44578888899999999999998 88 789999999999999999988776654 45557888888887 77
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 007190 372 ADLANLVNIAAIKAAVDGGEKLTATELEF 400 (613)
Q Consensus 372 adL~~lv~~Aa~~A~~~~~~~It~~dl~~ 400 (613)
++..+++.++..+ +...|+.+++..
T Consensus 215 RdALsLLdQAia~----~~~~It~~~V~~ 239 (830)
T PRK07003 215 RDALSLTDQAIAY----SANEVTETAVSG 239 (830)
T ss_pred HHHHHHHHHHHHh----ccCCcCHHHHHH
Confidence 8888888776643 234566665543
No 59
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.77 E-value=7.2e-18 Score=197.41 Aligned_cols=163 Identities=29% Similarity=0.401 Sum_probs=124.8
Q ss_pred ccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhh---------h
Q 007190 170 DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE---------E 240 (613)
Q Consensus 170 dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~---------~ 240 (613)
++.|++++|+.+.+.+...+.. +...+..+||+||||||||++|+++|+.++.+|+.++++.+. .
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~ 394 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRR 394 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCC
Confidence 4899999999998876542211 111223799999999999999999999999999998765432 2
Q ss_pred hhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhc-----ccc--------CCceEEE
Q 007190 241 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDG-----FEQ--------NEGIILM 307 (613)
Q Consensus 241 ~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg-----~~~--------~~~ViVI 307 (613)
.|.|....++.+.|..+....| ||||||||.+.+... +. ..+.|+..||. |.. .+++++|
T Consensus 395 ~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~---~~---~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I 467 (775)
T TIGR00763 395 TYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFR---GD---PASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFI 467 (775)
T ss_pred ceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccC---CC---HHHHHHHhcCHHhcCccccccCCceeccCCEEEE
Confidence 4667777778888888876666 899999999975321 11 23445555542 211 2478999
Q ss_pred eecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHh
Q 007190 308 AATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYL 348 (613)
Q Consensus 308 aaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l 348 (613)
+|||.++.++++|++ ||+ .|.|+.|+.+++.+|++.|+
T Consensus 468 ~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 468 ATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 999999999999998 994 78999999999999999886
No 60
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=1.8e-17 Score=183.14 Aligned_cols=205 Identities=19% Similarity=0.248 Sum_probs=148.8
Q ss_pred CCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCC-------------
Q 007190 162 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV------------- 228 (613)
Q Consensus 162 ~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~------------- 228 (613)
..++.+|+||+|++++++.|+..+. ..+.|.++|||||||||||++|+++|+.+++
T Consensus 7 kyRP~~~~divGq~~i~~~L~~~i~-----------~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~ 75 (472)
T PRK14962 7 KYRPKTFSEVVGQDHVKKLIINALK-----------KNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECR 75 (472)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccH
Confidence 4466899999999999888887664 2457778999999999999999999998765
Q ss_pred -----------CeeEeecchhhhhhhhhhHHHHHHHHHHHHc----CCCeEEEEcCCCccccCCccCCcccHHHHHHHHH
Q 007190 229 -----------PFFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLV 293 (613)
Q Consensus 229 -----------pfi~is~s~~~~~~~g~~~~~vr~lf~~A~~----~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~ 293 (613)
.++.++++. ..+...++.+...+.. ....||||||+|.+. ...++.|+.
T Consensus 76 ~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt----------~~a~~~LLk 139 (472)
T PRK14962 76 ACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT----------KEAFNALLK 139 (472)
T ss_pred HHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH----------HHHHHHHHH
Confidence 234443321 1122345555554432 234699999999983 345678888
Q ss_pred HhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHH
Q 007190 294 EMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGA 372 (613)
Q Consensus 294 ~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sga 372 (613)
.++. ....+++|++|+.|..+++++++ |+ ..+.|++|+.++...+++..++..+.. ++..+..|++.+.| +.+
T Consensus 140 ~LE~--p~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G-dlR 213 (472)
T PRK14962 140 TLEE--PPSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG-GLR 213 (472)
T ss_pred HHHh--CCCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-CHH
Confidence 8885 34467777777788899999998 88 589999999999999999988665433 44557888887765 566
Q ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 007190 373 DLANLVNIAAIKAAVDGGEKLTATELEFAKD 403 (613)
Q Consensus 373 dL~~lv~~Aa~~A~~~~~~~It~~dl~~A~~ 403 (613)
++.+.++.+... . ...||.+++..++.
T Consensus 214 ~aln~Le~l~~~---~-~~~It~e~V~~~l~ 240 (472)
T PRK14962 214 DALTMLEQVWKF---S-EGKITLETVHEALG 240 (472)
T ss_pred HHHHHHHHHHHh---c-CCCCCHHHHHHHHc
Confidence 666666554332 2 23599999987764
No 61
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=2.5e-17 Score=177.10 Aligned_cols=212 Identities=17% Similarity=0.216 Sum_probs=152.0
Q ss_pred cCCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeE--e----
Q 007190 160 MPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFY--R---- 233 (613)
Q Consensus 160 ~~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~--i---- 233 (613)
.....+.+|+||+|++++++.|+..+. .++.|+.+||+||||||||++|+++|++++++.-. -
T Consensus 7 ~~kyrP~~~~~iiGq~~~~~~l~~~~~-----------~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~ 75 (363)
T PRK14961 7 ARKWRPQYFRDIIGQKHIVTAISNGLS-----------LGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRK 75 (363)
T ss_pred HHHhCCCchhhccChHHHHHHHHHHHH-----------cCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 344566899999999999999887774 24577789999999999999999999988642110 0
Q ss_pred --ecch--------hhhh--hhhhhHHHHHHHHHHHHc----CCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhc
Q 007190 234 --AGSE--------FEEM--FVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDG 297 (613)
Q Consensus 234 --s~s~--------~~~~--~~g~~~~~vr~lf~~A~~----~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg 297 (613)
+|.+ +.+. ........++.+...+.. ....|++|||+|.+ .....+.||..++.
T Consensus 76 c~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l----------~~~a~naLLk~lEe 145 (363)
T PRK14961 76 CIICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHML----------SRHSFNALLKTLEE 145 (363)
T ss_pred CHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhc----------CHHHHHHHHHHHhc
Confidence 0111 1100 000123445666555432 23469999999998 23567788888885
Q ss_pred cccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHH
Q 007190 298 FEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLAN 376 (613)
Q Consensus 298 ~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~ 376 (613)
+...+.+|.+|+.++.+.+.+++ |+ ..+.+++|+.++..++++..++..+.. ++..+..++..+.| +++++.+
T Consensus 146 --~~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~R~al~ 219 (363)
T PRK14961 146 --PPQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SMRDALN 219 (363)
T ss_pred --CCCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHH
Confidence 34456667777878889999887 88 688999999999999999988776543 44557788888776 7888888
Q ss_pred HHHHHHHHHHHhCCCccCHHHHHHHH
Q 007190 377 LVNIAAIKAAVDGGEKLTATELEFAK 402 (613)
Q Consensus 377 lv~~Aa~~A~~~~~~~It~~dl~~A~ 402 (613)
+++.+... +...||.+++.+++
T Consensus 220 ~l~~~~~~----~~~~It~~~v~~~l 241 (363)
T PRK14961 220 LLEHAINL----GKGNINIKNVTDML 241 (363)
T ss_pred HHHHHHHh----cCCCCCHHHHHHHH
Confidence 88766532 46789999887765
No 62
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=1.9e-17 Score=185.31 Aligned_cols=204 Identities=20% Similarity=0.283 Sum_probs=153.6
Q ss_pred CCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCC-----------
Q 007190 161 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP----------- 229 (613)
Q Consensus 161 ~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~p----------- 229 (613)
...++.+|+||+|++.+++.|...+. .++.|+.+||+||||||||++|+++|+.+++.
T Consensus 7 rKyRPktFddVIGQe~vv~~L~~aI~-----------~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C 75 (702)
T PRK14960 7 RKYRPRNFNELVGQNHVSRALSSALE-----------RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVC 75 (702)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccC
Confidence 34566899999999999999988775 35677889999999999999999999998752
Q ss_pred -------------eeEeecchhhhhhhhhhHHHHHHHHHHHH----cCCCeEEEEcCCCccccCCccCCcccHHHHHHHH
Q 007190 230 -------------FFYRAGSEFEEMFVGVGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLL 292 (613)
Q Consensus 230 -------------fi~is~s~~~~~~~g~~~~~vr~lf~~A~----~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL 292 (613)
++.+++++ ..+...+|++...+. .....|+||||+|.| .....+.|+
T Consensus 76 ~sC~~I~~g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~L----------S~~A~NALL 139 (702)
T PRK14960 76 ATCKAVNEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHML----------STHSFNALL 139 (702)
T ss_pred HHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhc----------CHHHHHHHH
Confidence 23333221 112345566655543 234579999999998 345778899
Q ss_pred HHhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCH
Q 007190 293 VEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNG 371 (613)
Q Consensus 293 ~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sg 371 (613)
..++. ...++.+|.+|+.+..+++.+++ |+ .++.|.+++.++..+.++..+++.++. ++..+..|++.+.| +.
T Consensus 140 KtLEE--PP~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-dL 213 (702)
T PRK14960 140 KTLEE--PPEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-SL 213 (702)
T ss_pred HHHhc--CCCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 98884 34566777788888888888886 88 688999999999999999988876654 44457888888776 88
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 007190 372 ADLANLVNIAAIKAAVDGGEKLTATELEFA 401 (613)
Q Consensus 372 adL~~lv~~Aa~~A~~~~~~~It~~dl~~A 401 (613)
+++.+++..+... +...|+.+++...
T Consensus 214 RdALnLLDQaIay----g~g~IT~edV~~l 239 (702)
T PRK14960 214 RDALSLTDQAIAY----GQGAVHHQDVKEM 239 (702)
T ss_pred HHHHHHHHHHHHh----cCCCcCHHHHHHH
Confidence 8888888766532 4567898888664
No 63
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=1.6e-17 Score=185.20 Aligned_cols=205 Identities=16% Similarity=0.232 Sum_probs=153.5
Q ss_pred cCCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCC----------
Q 007190 160 MPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP---------- 229 (613)
Q Consensus 160 ~~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~p---------- 229 (613)
....++.+|+||+|++.+++.|+..+. ..+.|..+||+||||||||++|+++|+.+++.
T Consensus 7 ~~kyRP~~f~divGq~~v~~~L~~~~~-----------~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~ 75 (509)
T PRK14958 7 ARKWRPRCFQEVIGQAPVVRALSNALD-----------QQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCND 75 (509)
T ss_pred HHHHCCCCHHHhcCCHHHHHHHHHHHH-----------hCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCC
Confidence 345567899999999999999988875 35677789999999999999999999988753
Q ss_pred --------------eeEeecchhhhhhhhhhHHHHHHHHHHHHc----CCCeEEEEcCCCccccCCccCCcccHHHHHHH
Q 007190 230 --------------FFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQL 291 (613)
Q Consensus 230 --------------fi~is~s~~~~~~~g~~~~~vr~lf~~A~~----~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~L 291 (613)
++++++++ ..+...+|++.+.+.. ....|++|||+|.+ .....|.|
T Consensus 76 C~~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~l----------s~~a~naL 139 (509)
T PRK14958 76 CENCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHML----------SGHSFNAL 139 (509)
T ss_pred CHHHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhc----------CHHHHHHH
Confidence 33333321 1223446666655432 23469999999999 34567899
Q ss_pred HHHhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCC
Q 007190 292 LVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFN 370 (613)
Q Consensus 292 L~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~s 370 (613)
|+.|+. +...+++|.+|+.+..+.+.+++ |+ ..+.|..++.++....++..+++.+.. ++..+..+++.+.| +
T Consensus 140 Lk~LEe--pp~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-s 213 (509)
T PRK14958 140 LKTLEE--PPSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-S 213 (509)
T ss_pred HHHHhc--cCCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-c
Confidence 999985 34557777788888888888887 77 677899999999888888888776554 44457788888765 8
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 007190 371 GADLANLVNIAAIKAAVDGGEKLTATELEFA 401 (613)
Q Consensus 371 gadL~~lv~~Aa~~A~~~~~~~It~~dl~~A 401 (613)
.+++.++++.+... +...||.+++...
T Consensus 214 lR~al~lLdq~ia~----~~~~It~~~V~~~ 240 (509)
T PRK14958 214 VRDALSLLDQSIAY----GNGKVLIADVKTM 240 (509)
T ss_pred HHHHHHHHHHHHhc----CCCCcCHHHHHHH
Confidence 88999999876533 3457888887654
No 64
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.75 E-value=3.8e-17 Score=185.02 Aligned_cols=203 Identities=21% Similarity=0.327 Sum_probs=151.5
Q ss_pred CCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCC------------
Q 007190 162 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------ 229 (613)
Q Consensus 162 ~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~p------------ 229 (613)
...+.+|+||+|++.+++.|...+. .++.|..+||+||+|||||++|+++|+.+++.
T Consensus 9 KyRP~~f~divGQe~vv~~L~~~l~-----------~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~ 77 (647)
T PRK07994 9 KWRPQTFAEVVGQEHVLTALANALD-----------LGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECD 77 (647)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCH
Confidence 4456899999999999999988775 34677789999999999999999999988763
Q ss_pred ------------eeEeecchhhhhhhhhhHHHHHHHHHHHH----cCCCeEEEEcCCCccccCCccCCcccHHHHHHHHH
Q 007190 230 ------------FFYRAGSEFEEMFVGVGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLV 293 (613)
Q Consensus 230 ------------fi~is~s~~~~~~~g~~~~~vr~lf~~A~----~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~ 293 (613)
++.+++++ ..+...+|++...+. .+...|+||||+|.| .....|.||+
T Consensus 78 ~C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~L----------s~~a~NALLK 141 (647)
T PRK07994 78 NCREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHML----------SRHSFNALLK 141 (647)
T ss_pred HHHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhC----------CHHHHHHHHH
Confidence 12222211 012234555554443 234569999999999 3568899999
Q ss_pred HhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHH
Q 007190 294 EMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGA 372 (613)
Q Consensus 294 ~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sga 372 (613)
.|+. +...+++|.+|+.+..|.+.+++ |+ ..+.|+.++.++....|+..+...++. ++..+..|++.+.| +.+
T Consensus 142 tLEE--Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G-s~R 215 (647)
T PRK07994 142 TLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG-SMR 215 (647)
T ss_pred HHHc--CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 9994 55667788888889999999988 87 899999999999999999988765544 34557788888876 788
Q ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 007190 373 DLANLVNIAAIKAAVDGGEKLTATELEFA 401 (613)
Q Consensus 373 dL~~lv~~Aa~~A~~~~~~~It~~dl~~A 401 (613)
+..+++.++... +...|+.+++...
T Consensus 216 ~Al~lldqaia~----~~~~it~~~v~~~ 240 (647)
T PRK07994 216 DALSLTDQAIAS----GNGQVTTDDVSAM 240 (647)
T ss_pred HHHHHHHHHHHh----cCCCcCHHHHHHH
Confidence 888888766432 3345676666543
No 65
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=4.9e-17 Score=186.84 Aligned_cols=209 Identities=19% Similarity=0.248 Sum_probs=150.3
Q ss_pred CCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCC-------eeEe
Q 007190 161 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP-------FFYR 233 (613)
Q Consensus 161 ~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~p-------fi~i 233 (613)
...++.+|+||+|++.+++.|+..+. ..++|..+||+||||||||++||++|+.+++. +..+
T Consensus 8 eKyRP~tFddIIGQe~Iv~~LknaI~-----------~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C 76 (944)
T PRK14949 8 RKWRPATFEQMVGQSHVLHALTNALT-----------QQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC 76 (944)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHH-----------hCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc
Confidence 35566899999999999999888765 24678788999999999999999999998764 1111
Q ss_pred -ecchhhhh-------hh---hhhHHHHHHHHHHHH----cCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhcc
Q 007190 234 -AGSEFEEM-------FV---GVGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF 298 (613)
Q Consensus 234 -s~s~~~~~-------~~---g~~~~~vr~lf~~A~----~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~ 298 (613)
+|-.+... +. ..+...+|.+...+. .+...|+||||+|.| ....+|.||+.|+.
T Consensus 77 ~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L----------T~eAqNALLKtLEE- 145 (944)
T PRK14949 77 SSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML----------SRSSFNALLKTLEE- 145 (944)
T ss_pred hHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc----------CHHHHHHHHHHHhc-
Confidence 01111100 00 012234555554443 233469999999999 45788999999994
Q ss_pred ccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHHH
Q 007190 299 EQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANL 377 (613)
Q Consensus 299 ~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~l 377 (613)
+...+++|.+|+.+..|.+.+++ |+ .++.|++++.++....|++.+....+. ++..+..|++.+.| +.+++.++
T Consensus 146 -PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R~ALnL 220 (944)
T PRK14949 146 -PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SMRDALSL 220 (944)
T ss_pred -cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 45567777788888889999988 88 789999999999999999988765443 34457888888876 78888899
Q ss_pred HHHHHHHHHHhCCCccCHHHHHH
Q 007190 378 VNIAAIKAAVDGGEKLTATELEF 400 (613)
Q Consensus 378 v~~Aa~~A~~~~~~~It~~dl~~ 400 (613)
+.++... +...++.+.+..
T Consensus 221 LdQala~----~~~~It~~~V~~ 239 (944)
T PRK14949 221 TDQAIAF----GGGQVMLTQVQT 239 (944)
T ss_pred HHHHHHh----cCCcccHHHHHH
Confidence 8876622 334566665543
No 66
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.75 E-value=5.3e-17 Score=180.20 Aligned_cols=217 Identities=20% Similarity=0.270 Sum_probs=159.7
Q ss_pred cccCCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCee------
Q 007190 158 EVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFF------ 231 (613)
Q Consensus 158 ~~~~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi------ 231 (613)
++....++.+|+|++|++.+++.|+..+. ..+.|.++||+||||||||++|+++|+.+++.--
T Consensus 10 ~la~kyRP~~f~dliGq~~vv~~L~~ai~-----------~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~ 78 (507)
T PRK06645 10 PFARKYRPSNFAELQGQEVLVKVLSYTIL-----------NDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTT 78 (507)
T ss_pred chhhhhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcC
Confidence 44456677899999999999998887664 3567889999999999999999999999865211
Q ss_pred -----E-eecchhh--------hh--hhhhhHHHHHHHHHHHHcC----CCeEEEEcCCCccccCCccCCcccHHHHHHH
Q 007190 232 -----Y-RAGSEFE--------EM--FVGVGARRVRSLFQAAKKK----APCIIFIDEIDAVGSTRKQWEGHTKKTLHQL 291 (613)
Q Consensus 232 -----~-is~s~~~--------~~--~~g~~~~~vr~lf~~A~~~----~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~L 291 (613)
. -+|..+. +. ....+...++++++.+... ...|++|||+|.+ ....++.|
T Consensus 79 ~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~L----------s~~a~naL 148 (507)
T PRK06645 79 IKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHML----------SKGAFNAL 148 (507)
T ss_pred cCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhc----------CHHHHHHH
Confidence 0 0111111 00 0112345677777776532 3469999999998 24568889
Q ss_pred HHHhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCC
Q 007190 292 LVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFN 370 (613)
Q Consensus 292 L~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~s 370 (613)
+..++. +...+++|.+|+.++.+++.+++ |+ ..+.++.++.++...+++..+++.+.. ++..+..|++.+.| +
T Consensus 149 Lk~LEe--pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G-s 222 (507)
T PRK06645 149 LKTLEE--PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG-S 222 (507)
T ss_pred HHHHhh--cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 988884 45567777788888899999987 77 678999999999999999999876654 34457889988876 8
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 007190 371 GADLANLVNIAAIKAAVDGGEKLTATELEFAK 402 (613)
Q Consensus 371 gadL~~lv~~Aa~~A~~~~~~~It~~dl~~A~ 402 (613)
.+++.++++.+...+.. ....||.+++...+
T Consensus 223 lR~al~~Ldkai~~~~~-~~~~It~~~V~~ll 253 (507)
T PRK06645 223 ARDAVSILDQAASMSAK-SDNIISPQVINQML 253 (507)
T ss_pred HHHHHHHHHHHHHhhcc-CCCCcCHHHHHHHH
Confidence 99999999888665432 23468888887643
No 67
>PRK04195 replication factor C large subunit; Provisional
Probab=99.75 E-value=7e-17 Score=179.87 Aligned_cols=212 Identities=24% Similarity=0.279 Sum_probs=153.1
Q ss_pred cccCCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecch
Q 007190 158 EVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE 237 (613)
Q Consensus 158 ~~~~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~ 237 (613)
.|.....+.+|+||+|++++++.|.+++....+ +.+++++||+||||||||++|+++|++++.+++.+++++
T Consensus 3 ~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd 74 (482)
T PRK04195 3 PWVEKYRPKTLSDVVGNEKAKEQLREWIESWLK--------GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASD 74 (482)
T ss_pred CchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccc
Confidence 355667788999999999999999988764331 345789999999999999999999999999999999987
Q ss_pred hhhhhhhhhHHHHHHHHHHHHc------CCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecC
Q 007190 238 FEEMFVGVGARRVRSLFQAAKK------KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATN 311 (613)
Q Consensus 238 ~~~~~~g~~~~~vr~lf~~A~~------~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN 311 (613)
.... ..++.+...+.. ..+.+|+|||+|.+... .....++.|+..++. .+..+|++||
T Consensus 75 ~r~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~------~d~~~~~aL~~~l~~----~~~~iIli~n 138 (482)
T PRK04195 75 QRTA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGN------EDRGGARAILELIKK----AKQPIILTAN 138 (482)
T ss_pred cccH------HHHHHHHHHhhccCcccCCCCeEEEEecCcccccc------cchhHHHHHHHHHHc----CCCCEEEecc
Confidence 5432 122222222211 24679999999999542 123445666666662 2334566788
Q ss_pred CCCCCCh-hhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC
Q 007190 312 LPDILDP-ALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDG 389 (613)
Q Consensus 312 ~p~~Ld~-aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~ 389 (613)
.+..+++ .+++ |+ ..|.|++|+.++...+++..+...++. ++..+..|++.+. +|++.+++..... ..+
T Consensus 139 ~~~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~----GDlR~ain~Lq~~--a~~ 209 (482)
T PRK04195 139 DPYDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSG----GDLRSAINDLQAI--AEG 209 (482)
T ss_pred CccccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----CCHHHHHHHHHHH--hcC
Confidence 8888877 5654 44 689999999999999999998766554 3455788888664 4788888766553 345
Q ss_pred CCccCHHHHHHHH
Q 007190 390 GEKLTATELEFAK 402 (613)
Q Consensus 390 ~~~It~~dl~~A~ 402 (613)
...|+.+++....
T Consensus 210 ~~~it~~~v~~~~ 222 (482)
T PRK04195 210 YGKLTLEDVKTLG 222 (482)
T ss_pred CCCCcHHHHHHhh
Confidence 5678888886543
No 68
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.75 E-value=1.6e-16 Score=173.78 Aligned_cols=203 Identities=30% Similarity=0.401 Sum_probs=147.3
Q ss_pred CCCCCCCcccCCCHHHHHH---HHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchh
Q 007190 162 EKNVKTFKDVKGCDDAKQE---LVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 238 (613)
Q Consensus 162 ~~~~~~f~dV~G~~e~k~~---L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~ 238 (613)
..++.+|+|++|++++... |.+++. . . .+.+++|+||||||||++|+++|+..+.+|+.+++...
T Consensus 5 ~~RP~~l~d~vGq~~~v~~~~~L~~~i~---~--------~-~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~ 72 (413)
T PRK13342 5 RMRPKTLDEVVGQEHLLGPGKPLRRMIE---A--------G-RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS 72 (413)
T ss_pred hhCCCCHHHhcCcHHHhCcchHHHHHHH---c--------C-CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc
Confidence 3456789999999998666 666653 1 2 23479999999999999999999999999999987643
Q ss_pred hhhhhhhhHHHHHHHHHHHH----cCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecC--C
Q 007190 239 EEMFVGVGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATN--L 312 (613)
Q Consensus 239 ~~~~~g~~~~~vr~lf~~A~----~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN--~ 312 (613)
+...++.+++.+. .....+|||||+|.+. ....+.|+..++. ..+++|++|+ .
T Consensus 73 -------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~----------~~~q~~LL~~le~----~~iilI~att~n~ 131 (413)
T PRK13342 73 -------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFN----------KAQQDALLPHVED----GTITLIGATTENP 131 (413)
T ss_pred -------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhC----------HHHHHHHHHHhhc----CcEEEEEeCCCCh
Confidence 1234555555553 2356799999999983 2344566666653 4566776653 3
Q ss_pred CCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccC--CC--CChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 007190 313 PDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK--PL--ADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVD 388 (613)
Q Consensus 313 p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~--~l--~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~ 388 (613)
...+++++++ || ..+.+++|+.++...+++..+... .+ .++..+..+++.+.| +.+.+.++++.+...
T Consensus 132 ~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~~~---- 203 (413)
T PRK13342 132 SFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAALG---- 203 (413)
T ss_pred hhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHc----
Confidence 4578999998 88 788999999999999999887542 11 234446778887754 677777777765543
Q ss_pred CCCccCHHHHHHHHHHHh
Q 007190 389 GGEKLTATELEFAKDRIL 406 (613)
Q Consensus 389 ~~~~It~~dl~~A~~~v~ 406 (613)
...|+.+++..++....
T Consensus 204 -~~~It~~~v~~~~~~~~ 220 (413)
T PRK13342 204 -VDSITLELLEEALQKRA 220 (413)
T ss_pred -cCCCCHHHHHHHHhhhh
Confidence 46799999999887643
No 69
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.74 E-value=1.7e-17 Score=191.85 Aligned_cols=222 Identities=19% Similarity=0.269 Sum_probs=157.5
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc----------CCCeeEee
Q 007190 165 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFYRA 234 (613)
Q Consensus 165 ~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~----------~~pfi~is 234 (613)
.-+++.++|.++....+.+++.. +.+.++||+||||||||++|+++|... +..++.++
T Consensus 182 ~g~~~~liGR~~ei~~~i~iL~r------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 182 VGGIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred cCCCCcCcCCCHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 34689999999987666665532 223578999999999999999999864 34455555
Q ss_pred cchhh--hhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCC
Q 007190 235 GSEFE--EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNL 312 (613)
Q Consensus 235 ~s~~~--~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~ 312 (613)
.+.+. ..|.|..+.+++.+|..+++..++||||||||.+.+.+....+ .....|.|...+ .+..+.+|++||.
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g-~~d~~nlLkp~L----~~g~i~vIgATt~ 324 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGG-QVDAANLIKPLL----SSGKIRVIGSTTY 324 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCc-HHHHHHHHHHHH----hCCCeEEEecCCh
Confidence 55544 4578888999999999998888899999999999776532211 122222222222 3577999999998
Q ss_pred CC-----CCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhc-----HHHHHhcC-----CCCCHHHHHHH
Q 007190 313 PD-----ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVD-----VKAIARGT-----PGFNGADLANL 377 (613)
Q Consensus 313 p~-----~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~d-----l~~la~~t-----~G~sgadL~~l 377 (613)
++ ..|++|.| ||+ .|.++.|+.+++..||+.+........+++ +...+..+ ..+-|.....+
T Consensus 325 ~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidl 401 (758)
T PRK11034 325 QEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDV 401 (758)
T ss_pred HHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHH
Confidence 75 57999999 996 799999999999999998765543333332 33333222 23456688889
Q ss_pred HHHHHHHHH----HhCCCccCHHHHHHHHHHHh
Q 007190 378 VNIAAIKAA----VDGGEKLTATELEFAKDRIL 406 (613)
Q Consensus 378 v~~Aa~~A~----~~~~~~It~~dl~~A~~~v~ 406 (613)
+++|+.... ......|+.+|+...+.+..
T Consensus 402 ldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~t 434 (758)
T PRK11034 402 IDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_pred HHHHHHhhccCcccccccccChhhHHHHHHHHh
Confidence 998875432 22345689999998887754
No 70
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.74 E-value=1.3e-16 Score=176.31 Aligned_cols=219 Identities=21% Similarity=0.326 Sum_probs=152.2
Q ss_pred CCCCCcccC-CCH--HHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc-----CCCeeEeec
Q 007190 164 NVKTFKDVK-GCD--DAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAG 235 (613)
Q Consensus 164 ~~~~f~dV~-G~~--e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~-----~~pfi~is~ 235 (613)
+..+|++.+ |.. .+...++++. .+| .....+++||||||||||+|++++++++ +..++++++
T Consensus 117 ~~~tfd~fv~g~~n~~a~~~~~~~~---~~~-------~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~ 186 (450)
T PRK00149 117 PKYTFDNFVVGKSNRLAHAAALAVA---ENP-------GKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS 186 (450)
T ss_pred CCCcccccccCCCcHHHHHHHHHHH---hCc-------CccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 445899954 432 2333333333 232 1223469999999999999999999987 567899999
Q ss_pred chhhhhhhhhhHH-HHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCC
Q 007190 236 SEFEEMFVGVGAR-RVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD 314 (613)
Q Consensus 236 s~~~~~~~g~~~~-~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~ 314 (613)
.+|...+...... ....+.+..+ .+.+|+|||+|.+.+++ .+...|+..++....+...+||+++..|.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~--------~~~~~l~~~~n~l~~~~~~iiits~~~p~ 256 (450)
T PRK00149 187 EKFTNDFVNALRNNTMEEFKEKYR--SVDVLLIDDIQFLAGKE--------RTQEEFFHTFNALHEAGKQIVLTSDRPPK 256 (450)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHh--cCCEEEEehhhhhcCCH--------HHHHHHHHHHHHHHHCCCcEEEECCCCHH
Confidence 9887765544322 1222322222 46799999999985432 22334444444433344456776666665
Q ss_pred C---CChhhcCCCccce--EEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 007190 315 I---LDPALTRPGRFDR--HIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVD 388 (613)
Q Consensus 315 ~---Ld~aLlRpgRFd~--~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~ 388 (613)
. +++.+.+ ||.. .+.+++|+.++|.+|++..+...++. ++..++.|+..+.| +.++|..+++.....+...
T Consensus 257 ~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~~~ 333 (450)
T PRK00149 257 ELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYASLT 333 (450)
T ss_pred HHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHHhh
Confidence 4 6788887 9964 89999999999999999999865543 44558889988876 8999999999887776555
Q ss_pred CCCccCHHHHHHHHHHHh
Q 007190 389 GGEKLTATELEFAKDRIL 406 (613)
Q Consensus 389 ~~~~It~~dl~~A~~~v~ 406 (613)
+ ..||.+.+++++..+.
T Consensus 334 ~-~~it~~~~~~~l~~~~ 350 (450)
T PRK00149 334 G-KPITLELAKEALKDLL 350 (450)
T ss_pred C-CCCCHHHHHHHHHHhh
Confidence 4 5699999999998764
No 71
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=1e-16 Score=176.67 Aligned_cols=203 Identities=19% Similarity=0.241 Sum_probs=155.5
Q ss_pred CCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCC-------------
Q 007190 162 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV------------- 228 (613)
Q Consensus 162 ~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~------------- 228 (613)
..++.+|+||+|++.+++.|+..+. .++.|+++||+||||||||++|+.+|+.+++
T Consensus 6 KyRP~~f~dliGQe~vv~~L~~a~~-----------~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~ 74 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFT-----------LNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCH 74 (491)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccH
Confidence 3456799999999999998887664 3567889999999999999999999997643
Q ss_pred -----------CeeEeecchhhhhhhhhhHHHHHHHHHHHHc----CCCeEEEEcCCCccccCCccCCcccHHHHHHHHH
Q 007190 229 -----------PFFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLV 293 (613)
Q Consensus 229 -----------pfi~is~s~~~~~~~g~~~~~vr~lf~~A~~----~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~ 293 (613)
.++++++++ ..+...++.+.+.+.. ....|++|||+|.+ ....+|.|+.
T Consensus 75 ~C~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~L----------s~~A~NaLLK 138 (491)
T PRK14964 75 NCISIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHML----------SNSAFNALLK 138 (491)
T ss_pred HHHHHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhC----------CHHHHHHHHH
Confidence 234444432 1233456777666542 23469999999988 3457889999
Q ss_pred HhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHH
Q 007190 294 EMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGA 372 (613)
Q Consensus 294 ~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sga 372 (613)
.|+. +...+++|.+|+.++.+.+.+++ |+ ..+.|.+++.++....++..+++.+.. ++..+..|++.+.| +.+
T Consensus 139 ~LEe--Pp~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-slR 212 (491)
T PRK14964 139 TLEE--PAPHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SMR 212 (491)
T ss_pred HHhC--CCCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 9995 44567777788888889999988 88 678999999999999999988776654 45557888888875 888
Q ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 007190 373 DLANLVNIAAIKAAVDGGEKLTATELEFA 401 (613)
Q Consensus 373 dL~~lv~~Aa~~A~~~~~~~It~~dl~~A 401 (613)
++.++++.+..+. ...||.+++...
T Consensus 213 ~alslLdqli~y~----~~~It~e~V~~l 237 (491)
T PRK14964 213 NALFLLEQAAIYS----NNKISEKSVRDL 237 (491)
T ss_pred HHHHHHHHHHHhc----CCCCCHHHHHHH
Confidence 9989888776543 347898888764
No 72
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.73 E-value=7.9e-17 Score=181.88 Aligned_cols=211 Identities=21% Similarity=0.315 Sum_probs=155.0
Q ss_pred CCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCee--Eeecc--
Q 007190 161 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFF--YRAGS-- 236 (613)
Q Consensus 161 ~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi--~is~s-- 236 (613)
.+.++.+|+||+|++.+++.|+..+. ..++|+++||+||||||||++|+++|+.++++-. ...|.
T Consensus 8 rKYRP~tFddIIGQe~vv~~L~~ai~-----------~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C 76 (709)
T PRK08691 8 RKWRPKTFADLVGQEHVVKALQNALD-----------EGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVC 76 (709)
T ss_pred HHhCCCCHHHHcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCccc
Confidence 35567899999999999999988875 2567889999999999999999999998765311 00011
Q ss_pred ------------hhhhh--hhhhhHHHHHHHHHHHHc----CCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhcc
Q 007190 237 ------------EFEEM--FVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF 298 (613)
Q Consensus 237 ------------~~~~~--~~g~~~~~vr~lf~~A~~----~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~ 298 (613)
++.+. ....+...+++++..+.. ....|+||||+|.+ ....++.||+.|+.
T Consensus 77 ~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~L----------s~~A~NALLKtLEE- 145 (709)
T PRK08691 77 QSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHML----------SKSAFNAMLKTLEE- 145 (709)
T ss_pred HHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECcccc----------CHHHHHHHHHHHHh-
Confidence 01000 011233457777765432 23469999999988 24567889999985
Q ss_pred ccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHHH
Q 007190 299 EQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANL 377 (613)
Q Consensus 299 ~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~l 377 (613)
....+.+|.+|+.+..+.+.+++ |+ ..+.|+.++.++...+|+..+++.++. ++..+..|++.+.| +.+++.++
T Consensus 146 -Pp~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-slRdAlnL 220 (709)
T PRK08691 146 -PPEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SMRDALSL 220 (709)
T ss_pred -CCCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CHHHHHHH
Confidence 34557777788888899888886 88 678888999999999999999876654 34457888888865 88999999
Q ss_pred HHHHHHHHHHhCCCccCHHHHHHHH
Q 007190 378 VNIAAIKAAVDGGEKLTATELEFAK 402 (613)
Q Consensus 378 v~~Aa~~A~~~~~~~It~~dl~~A~ 402 (613)
++.+... +...|+.+++...+
T Consensus 221 LDqaia~----g~g~It~e~V~~lL 241 (709)
T PRK08691 221 LDQAIAL----GSGKVAENDVRQMI 241 (709)
T ss_pred HHHHHHh----cCCCcCHHHHHHHH
Confidence 9877653 34578888776654
No 73
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.73 E-value=2.2e-16 Score=172.24 Aligned_cols=221 Identities=22% Similarity=0.340 Sum_probs=149.8
Q ss_pred CCCCCcc-cCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc-----CCCeeEeecch
Q 007190 164 NVKTFKD-VKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAGSE 237 (613)
Q Consensus 164 ~~~~f~d-V~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~-----~~pfi~is~s~ 237 (613)
+..+|++ ++|.+.. ........+..+| ...+.+++||||||||||+|++++++++ +..++++++.+
T Consensus 105 ~~~tfd~fi~g~~n~-~a~~~~~~~~~~~-------~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~ 176 (405)
T TIGR00362 105 PKYTFDNFVVGKSNR-LAHAAALAVAENP-------GKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEK 176 (405)
T ss_pred CCCcccccccCCcHH-HHHHHHHHHHhCc-------CccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHH
Confidence 4468999 5564432 1222222222222 1234579999999999999999999976 57899999988
Q ss_pred hhhhhhhhhHH-HHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCCC-
Q 007190 238 FEEMFVGVGAR-RVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI- 315 (613)
Q Consensus 238 ~~~~~~g~~~~-~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~- 315 (613)
|...+...... .+..+....+ .+.+|+|||+|.+.++. .+...|+..++....+...+||+++..|..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~--------~~~~~l~~~~n~~~~~~~~iiits~~~p~~l 246 (405)
T TIGR00362 177 FTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGKE--------RTQEEFFHTFNALHENGKQIVLTSDRPPKEL 246 (405)
T ss_pred HHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCCH--------HHHHHHHHHHHHHHHCCCCEEEecCCCHHHH
Confidence 87655433211 1222222232 25799999999985432 222334444443333444566666666654
Q ss_pred --CChhhcCCCccce--EEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC
Q 007190 316 --LDPALTRPGRFDR--HIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGG 390 (613)
Q Consensus 316 --Ld~aLlRpgRFd~--~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~ 390 (613)
+++.+.+ ||.. .+.+++||.++|..|++..++..++. ++..+..||+...+ +.++|..+++.....|...+
T Consensus 247 ~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a~~~~- 322 (405)
T TIGR00362 247 PGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYASLTG- 322 (405)
T ss_pred hhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhC-
Confidence 5678887 8975 79999999999999999999876554 44557888988775 88999999998877765544
Q ss_pred CccCHHHHHHHHHHHh
Q 007190 391 EKLTATELEFAKDRIL 406 (613)
Q Consensus 391 ~~It~~dl~~A~~~v~ 406 (613)
..||.+.+++++....
T Consensus 323 ~~it~~~~~~~L~~~~ 338 (405)
T TIGR00362 323 KPITLELAKEALKDLL 338 (405)
T ss_pred CCCCHHHHHHHHHHhc
Confidence 6799999999887654
No 74
>PLN03025 replication factor C subunit; Provisional
Probab=99.73 E-value=1.6e-16 Score=168.10 Aligned_cols=204 Identities=19% Similarity=0.201 Sum_probs=140.6
Q ss_pred ccCCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCC-----CeeEe
Q 007190 159 VMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV-----PFFYR 233 (613)
Q Consensus 159 ~~~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~-----pfi~i 233 (613)
|.....+.+|+|++|++++++.|+.++. +.+.| ++|||||||||||++|+++|+++.. .++.+
T Consensus 3 w~~kyrP~~l~~~~g~~~~~~~L~~~~~-----------~~~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~el 70 (319)
T PLN03025 3 WVEKYRPTKLDDIVGNEDAVSRLQVIAR-----------DGNMP-NLILSGPPGTGKTTSILALAHELLGPNYKEAVLEL 70 (319)
T ss_pred hhhhcCCCCHHHhcCcHHHHHHHHHHHh-----------cCCCc-eEEEECCCCCCHHHHHHHHHHHHhcccCccceeee
Confidence 4556778899999999999998887764 13344 6999999999999999999999732 36666
Q ss_pred ecchhhhhhhhhhHHHHHHHHHH---HH----cCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEE
Q 007190 234 AGSEFEEMFVGVGARRVRSLFQA---AK----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIIL 306 (613)
Q Consensus 234 s~s~~~~~~~g~~~~~vr~lf~~---A~----~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViV 306 (613)
+.++.... ..+++.... .. ...+.|++|||+|.+. ....+.|+..|+.+.. ...+
T Consensus 71 n~sd~~~~------~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt----------~~aq~aL~~~lE~~~~--~t~~ 132 (319)
T PLN03025 71 NASDDRGI------DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMT----------SGAQQALRRTMEIYSN--TTRF 132 (319)
T ss_pred cccccccH------HHHHHHHHHHHhccccCCCCCeEEEEEechhhcC----------HHHHHHHHHHHhcccC--CceE
Confidence 76653221 123332222 11 1235799999999993 2345667777765433 3445
Q ss_pred EeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 007190 307 MAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKA 385 (613)
Q Consensus 307 IaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A 385 (613)
|.+||.+..+.+++++ |+ ..+.|++|+.++....++..+++.++. ++..+..++..+.| |++.+++.....+
T Consensus 133 il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g----DlR~aln~Lq~~~ 205 (319)
T PLN03025 133 ALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG----DMRQALNNLQATH 205 (319)
T ss_pred EEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHH
Confidence 6678888888889987 77 588999999999999999988776554 45557788876654 4444444333211
Q ss_pred HHhCCCccCHHHHHHH
Q 007190 386 AVDGGEKLTATELEFA 401 (613)
Q Consensus 386 ~~~~~~~It~~dl~~A 401 (613)
.+...||.+++...
T Consensus 206 --~~~~~i~~~~v~~~ 219 (319)
T PLN03025 206 --SGFGFVNQENVFKV 219 (319)
T ss_pred --hcCCCCCHHHHHHH
Confidence 23457888887643
No 75
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.72 E-value=2.9e-16 Score=172.72 Aligned_cols=224 Identities=17% Similarity=0.225 Sum_probs=150.2
Q ss_pred CCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc-----CCCeeEeecch
Q 007190 163 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAGSE 237 (613)
Q Consensus 163 ~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~-----~~pfi~is~s~ 237 (613)
.+..||++.+--+.-.........+..+|.. +.+++||||||+|||+|++++++++ +..++++++++
T Consensus 99 ~~~~tFdnFv~g~~n~~a~~~~~~~~~~~~~--------~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~ 170 (440)
T PRK14088 99 NPDYTFENFVVGPGNSFAYHAALEVAKNPGR--------YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_pred CCCCcccccccCCchHHHHHHHHHHHhCcCC--------CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 4556899987333332233333333333321 3469999999999999999999975 45789999998
Q ss_pred hhhhhhhhhH-HHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCCC-
Q 007190 238 FEEMFVGVGA-RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI- 315 (613)
Q Consensus 238 ~~~~~~g~~~-~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~- 315 (613)
|...+..... ..+.. |.......+.+|+|||++.+.++. .+...++..++....+...+|+++.+.|..
T Consensus 171 f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~~--------~~q~elf~~~n~l~~~~k~iIitsd~~p~~l 241 (440)
T PRK14088 171 FLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGKT--------GVQTELFHTFNELHDSGKQIVICSDREPQKL 241 (440)
T ss_pred HHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCcH--------HHHHHHHHHHHHHHHcCCeEEEECCCCHHHH
Confidence 8766543321 12223 322222357899999999885431 122334444444334445566666666655
Q ss_pred --CChhhcCCCccc--eEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC
Q 007190 316 --LDPALTRPGRFD--RHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGG 390 (613)
Q Consensus 316 --Ld~aLlRpgRFd--~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~ 390 (613)
+++.+.+ ||. ..+.+++||.+.|.+|++..+....+. ++..+..|++...| +.++|..+++.....+...+
T Consensus 242 ~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~~~~~- 317 (440)
T PRK14088 242 SEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETTG- 317 (440)
T ss_pred HHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHHHHhC-
Confidence 4567776 775 378899999999999999998764443 34457888888875 88999999998766665554
Q ss_pred CccCHHHHHHHHHHHhc
Q 007190 391 EKLTATELEFAKDRILM 407 (613)
Q Consensus 391 ~~It~~dl~~A~~~v~~ 407 (613)
..||.+.+.+++...+.
T Consensus 318 ~~it~~~a~~~L~~~~~ 334 (440)
T PRK14088 318 EEVDLKEAILLLKDFIK 334 (440)
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 67999999999887643
No 76
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=2.7e-16 Score=175.05 Aligned_cols=203 Identities=22% Similarity=0.290 Sum_probs=149.9
Q ss_pred CCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCC------------
Q 007190 162 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------ 229 (613)
Q Consensus 162 ~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~p------------ 229 (613)
...+.+|+||+|++++++.|+..+. ..+.|..+|||||||||||++|+++|+.+.+.
T Consensus 7 KyRP~~~~dvvGq~~v~~~L~~~i~-----------~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~s 75 (504)
T PRK14963 7 RARPITFDEVVGQEHVKEVLLAALR-----------QGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECES 75 (504)
T ss_pred hhCCCCHHHhcChHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChh
Confidence 4556799999999999999988876 24577778999999999999999999987541
Q ss_pred -----------eeEeecchhhhhhhhhhHHHHHHHHHHHHc----CCCeEEEEcCCCccccCCccCCcccHHHHHHHHHH
Q 007190 230 -----------FFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVE 294 (613)
Q Consensus 230 -----------fi~is~s~~~~~~~g~~~~~vr~lf~~A~~----~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ 294 (613)
++.+++++ ..+...++++...+.. ..+.||+|||+|.+ ....++.|+..
T Consensus 76 c~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~l----------s~~a~naLLk~ 139 (504)
T PRK14963 76 CLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMM----------SKSAFNALLKT 139 (504)
T ss_pred hHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECcccc----------CHHHHHHHHHH
Confidence 23333321 1123445555444432 34679999999987 34678889998
Q ss_pred hhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHH
Q 007190 295 MDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGAD 373 (613)
Q Consensus 295 ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgad 373 (613)
++. ....+++|.+|+.+..+.+.+.+ |+ ..+.|++|+.++....++..+++.++. ++..+..|++.+.| +.++
T Consensus 140 LEe--p~~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G-dlR~ 213 (504)
T PRK14963 140 LEE--PPEHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG-AMRD 213 (504)
T ss_pred HHh--CCCCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 885 34456777788888999999987 77 578999999999999999998876654 34457788887775 6777
Q ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 007190 374 LANLVNIAAIKAAVDGGEKLTATELEFAK 402 (613)
Q Consensus 374 L~~lv~~Aa~~A~~~~~~~It~~dl~~A~ 402 (613)
+.++++.+... ...||.+++...+
T Consensus 214 aln~Lekl~~~-----~~~It~~~V~~~l 237 (504)
T PRK14963 214 AESLLERLLAL-----GTPVTRKQVEEAL 237 (504)
T ss_pred HHHHHHHHHhc-----CCCCCHHHHHHHH
Confidence 77777765321 3478988877653
No 77
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=2e-16 Score=178.75 Aligned_cols=204 Identities=19% Similarity=0.272 Sum_probs=152.3
Q ss_pred CCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCC-----------
Q 007190 161 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP----------- 229 (613)
Q Consensus 161 ~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~p----------- 229 (613)
....+.+|+||+|++.+++.|++.+. ..+.|..+||+||+|||||++|+++|+.+++.
T Consensus 8 ~KyRP~~f~dviGQe~vv~~L~~~l~-----------~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~ 76 (618)
T PRK14951 8 RKYRPRSFSEMVGQEHVVQALTNALT-----------QQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITAT 76 (618)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCC
Confidence 34566899999999999999988775 35677789999999999999999999988651
Q ss_pred ------------------eeEeecchhhhhhhhhhHHHHHHHHHHHHcC----CCeEEEEcCCCccccCCccCCcccHHH
Q 007190 230 ------------------FFYRAGSEFEEMFVGVGARRVRSLFQAAKKK----APCIIFIDEIDAVGSTRKQWEGHTKKT 287 (613)
Q Consensus 230 ------------------fi~is~s~~~~~~~g~~~~~vr~lf~~A~~~----~P~ILfIDEiD~l~~~r~~~~~~~~~~ 287 (613)
++.+++++ ..+...++++.+.+... ...|++|||+|.| ....
T Consensus 77 pCg~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~L----------s~~a 140 (618)
T PRK14951 77 PCGVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHML----------TNTA 140 (618)
T ss_pred CCCccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhC----------CHHH
Confidence 11221111 11234566766665422 2359999999999 3456
Q ss_pred HHHHHHHhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcC
Q 007190 288 LHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGT 366 (613)
Q Consensus 288 l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t 366 (613)
.|.||+.++. ....+++|.+|+.+..+.+.+++ |+ .++.|..++.++....++..+.+.++. ++..+..|++.+
T Consensus 141 ~NaLLKtLEE--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s 215 (618)
T PRK14951 141 FNAMLKTLEE--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAA 215 (618)
T ss_pred HHHHHHhccc--CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 8899999884 45567777777888888888887 77 789999999999999999988776654 344578888888
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 007190 367 PGFNGADLANLVNIAAIKAAVDGGEKLTATELEFA 401 (613)
Q Consensus 367 ~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A 401 (613)
.| +.+++.++++++... +...||.++++..
T Consensus 216 ~G-slR~al~lLdq~ia~----~~~~It~~~V~~~ 245 (618)
T PRK14951 216 RG-SMRDALSLTDQAIAF----GSGQLQEAAVRQM 245 (618)
T ss_pred CC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHH
Confidence 76 888888888766543 3457887777654
No 78
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.72 E-value=3e-16 Score=177.06 Aligned_cols=204 Identities=22% Similarity=0.309 Sum_probs=153.9
Q ss_pred CCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCC-----------
Q 007190 161 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP----------- 229 (613)
Q Consensus 161 ~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~p----------- 229 (613)
...++.+|+||+|++++++.|+..+. ..+.++.+|||||+|||||++|+.+|+.++++
T Consensus 8 ~k~rP~~f~~viGq~~v~~~L~~~i~-----------~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C 76 (559)
T PRK05563 8 RKWRPQTFEDVVGQEHITKTLKNAIK-----------QGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNEC 76 (559)
T ss_pred HHhCCCcHHhccCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 34566899999999999999988875 24567789999999999999999999987642
Q ss_pred -------------eeEeecchhhhhhhhhhHHHHHHHHHHHHc----CCCeEEEEcCCCccccCCccCCcccHHHHHHHH
Q 007190 230 -------------FFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLL 292 (613)
Q Consensus 230 -------------fi~is~s~~~~~~~g~~~~~vr~lf~~A~~----~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL 292 (613)
++.++++ .+.+...++++...+.. ....|++|||+|.+ ....+|.|+
T Consensus 77 ~~C~~i~~g~~~dv~eidaa------s~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~L----------t~~a~naLL 140 (559)
T PRK05563 77 EICKAITNGSLMDVIEIDAA------SNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHML----------STGAFNALL 140 (559)
T ss_pred HHHHHHhcCCCCCeEEeecc------ccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccC----------CHHHHHHHH
Confidence 2222221 12234557777776553 23469999999998 345788999
Q ss_pred HHhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCH
Q 007190 293 VEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNG 371 (613)
Q Consensus 293 ~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sg 371 (613)
..++. +...+++|.+|+.++.+++.+++ |+ ..+.|++|+.++....++..+++.++. ++..+..+++.+.| +.
T Consensus 141 KtLEe--pp~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~ 214 (559)
T PRK05563 141 KTLEE--PPAHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GM 214 (559)
T ss_pred HHhcC--CCCCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 99984 45567777778889999999987 88 467899999999999999988776654 34457788887776 88
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 007190 372 ADLANLVNIAAIKAAVDGGEKLTATELEFA 401 (613)
Q Consensus 372 adL~~lv~~Aa~~A~~~~~~~It~~dl~~A 401 (613)
+++.++++.+... +...||.+++..+
T Consensus 215 R~al~~Ldq~~~~----~~~~It~~~V~~v 240 (559)
T PRK05563 215 RDALSILDQAISF----GDGKVTYEDALEV 240 (559)
T ss_pred HHHHHHHHHHHHh----ccCCCCHHHHHHH
Confidence 8888888876544 2456888877654
No 79
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.71 E-value=9.9e-16 Score=164.32 Aligned_cols=219 Identities=23% Similarity=0.329 Sum_probs=151.7
Q ss_pred cccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcC---------CCeeEeecchhh
Q 007190 169 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG---------VPFFYRAGSEFE 239 (613)
Q Consensus 169 ~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~---------~pfi~is~s~~~ 239 (613)
++++|.++..++|...+..... +..|.+++|+||||||||++++++++++. +++++++|....
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~--------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~ 86 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR--------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILD 86 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCC
Confidence 4789999988888776653221 23455899999999999999999998652 578888886542
Q ss_pred hh----------hh--hh--------hHHHHHHHHHHHH-cCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhc-
Q 007190 240 EM----------FV--GV--------GARRVRSLFQAAK-KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDG- 297 (613)
Q Consensus 240 ~~----------~~--g~--------~~~~vr~lf~~A~-~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg- 297 (613)
.. .. +. ..+..+.++.... ...+.||+|||+|.+.+. ....+.+|+...+.
T Consensus 87 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~-------~~~~L~~l~~~~~~~ 159 (365)
T TIGR02928 87 TLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD-------DDDLLYQLSRARSNG 159 (365)
T ss_pred CHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC-------CcHHHHhHhcccccc
Confidence 21 10 10 1122344555443 345789999999999622 22456666654221
Q ss_pred cccCCceEEEeecCCCC---CCChhhcCCCccc-eEEEccCCCHhhHHHHHHHHhccC---CCCChhcHHH---HHhcCC
Q 007190 298 FEQNEGIILMAATNLPD---ILDPALTRPGRFD-RHIVVPNPDVRGRQEILELYLQDK---PLADDVDVKA---IARGTP 367 (613)
Q Consensus 298 ~~~~~~ViVIaaTN~p~---~Ld~aLlRpgRFd-~~I~v~~Pd~~~R~~IL~~~l~~~---~l~~d~dl~~---la~~t~ 367 (613)
..++.++.+|+++|.++ .+++.+.+ ||. ..+.|++++.++..+|++.+++.. ...++..+.. ++..+.
T Consensus 160 ~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~ 237 (365)
T TIGR02928 160 DLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEH 237 (365)
T ss_pred CCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhc
Confidence 12336788999999885 57888877 775 679999999999999999988621 1112222333 444445
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 007190 368 GFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRI 405 (613)
Q Consensus 368 G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A~~~v 405 (613)
| ..+.+.++|+.|...|..++...||.+|+..|++.+
T Consensus 238 G-d~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 238 G-DARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred C-CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 5 566777889999998988888899999999998876
No 80
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.71 E-value=6.5e-16 Score=163.60 Aligned_cols=213 Identities=21% Similarity=0.254 Sum_probs=141.7
Q ss_pred cccCCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcC-----CCeeE
Q 007190 158 EVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG-----VPFFY 232 (613)
Q Consensus 158 ~~~~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~-----~pfi~ 232 (613)
.|.....+.+|++++|++++++.|..++. ....| ++||+||||||||++|+++++++. .++++
T Consensus 4 ~w~~ky~P~~~~~~~g~~~~~~~L~~~~~-----------~~~~~-~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~ 71 (337)
T PRK12402 4 LWTEKYRPALLEDILGQDEVVERLSRAVD-----------SPNLP-HLLVQGPPGSGKTAAVRALARELYGDPWENNFTE 71 (337)
T ss_pred chHHhhCCCcHHHhcCCHHHHHHHHHHHh-----------CCCCc-eEEEECCCCCCHHHHHHHHHHHhcCcccccceEE
Confidence 34456677899999999999999888764 12233 699999999999999999999873 45788
Q ss_pred eecchhhhhh-------------hhh-------hHHHHHHHHHHHHc-----CCCeEEEEcCCCccccCCccCCcccHHH
Q 007190 233 RAGSEFEEMF-------------VGV-------GARRVRSLFQAAKK-----KAPCIIFIDEIDAVGSTRKQWEGHTKKT 287 (613)
Q Consensus 233 is~s~~~~~~-------------~g~-------~~~~vr~lf~~A~~-----~~P~ILfIDEiD~l~~~r~~~~~~~~~~ 287 (613)
++++++.... .+. ....++.+...... ..+.+|+|||+|.+. ...
T Consensus 72 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~----------~~~ 141 (337)
T PRK12402 72 FNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR----------EDA 141 (337)
T ss_pred echhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC----------HHH
Confidence 8887764221 111 11223333323222 234699999999883 223
Q ss_pred HHHHHHHhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcC
Q 007190 288 LHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGT 366 (613)
Q Consensus 288 l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t 366 (613)
.+.|+..++....+ ..+|.+|+.+..+.+.+.+ |+ ..+.+++|+.++...+++..+++.+.. ++..+..+++.+
T Consensus 142 ~~~L~~~le~~~~~--~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~ 216 (337)
T PRK12402 142 QQALRRIMEQYSRT--CRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYA 216 (337)
T ss_pred HHHHHHHHHhccCC--CeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 44555666644332 3344455566677778877 76 578999999999999999988776554 455578888877
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 007190 367 PGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKD 403 (613)
Q Consensus 367 ~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A~~ 403 (613)
.| |++.+++.....+ .+...||.+++.+++.
T Consensus 217 ~g----dlr~l~~~l~~~~--~~~~~It~~~v~~~~~ 247 (337)
T PRK12402 217 GG----DLRKAILTLQTAA--LAAGEITMEAAYEALG 247 (337)
T ss_pred CC----CHHHHHHHHHHHH--HcCCCCCHHHHHHHhC
Confidence 43 4444554443333 2334799999877543
No 81
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=3.2e-16 Score=176.17 Aligned_cols=207 Identities=21% Similarity=0.286 Sum_probs=149.5
Q ss_pred ccCCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCC---------
Q 007190 159 VMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP--------- 229 (613)
Q Consensus 159 ~~~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~p--------- 229 (613)
+....++.+|+||+|++.+++.|+..+. ..+.+..+||+||||||||++|+++|+.+.+.
T Consensus 6 la~KyRP~sf~dIiGQe~v~~~L~~ai~-----------~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg 74 (624)
T PRK14959 6 LTARYRPQTFAEVAGQETVKAILSRAAQ-----------ENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCN 74 (624)
T ss_pred HHHHhCCCCHHHhcCCHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCc
Confidence 3445677899999999999999988775 24556789999999999999999999988753
Q ss_pred ---------------eeEeecchhhhhhhhhhHHHHHHHHHHHH----cCCCeEEEEcCCCccccCCccCCcccHHHHHH
Q 007190 230 ---------------FFYRAGSEFEEMFVGVGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQ 290 (613)
Q Consensus 230 ---------------fi~is~s~~~~~~~g~~~~~vr~lf~~A~----~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~ 290 (613)
++.++++. ..+...++.+.+.+. .....||||||+|.+ ....++.
T Consensus 75 ~C~sC~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~L----------t~~a~na 138 (624)
T PRK14959 75 TCEQCRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHML----------TREAFNA 138 (624)
T ss_pred ccHHHHHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhC----------CHHHHHH
Confidence 23333211 011223333322222 234569999999999 2456788
Q ss_pred HHHHhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCC
Q 007190 291 LLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGF 369 (613)
Q Consensus 291 LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~ 369 (613)
|+..|+. ....+++|.+||.++.+.+.+++ |+ ..+.|+.++.++...+|+..+...... ++..+..|++.+.|
T Consensus 139 LLk~LEE--P~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~G- 212 (624)
T PRK14959 139 LLKTLEE--PPARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG- 212 (624)
T ss_pred HHHHhhc--cCCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 9998885 34567888888888888888887 87 578999999999999999888766543 44557788887765
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 007190 370 NGADLANLVNIAAIKAAVDGGEKLTATELEFAK 402 (613)
Q Consensus 370 sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A~ 402 (613)
+.+++.++++++. ..+...||.+++..++
T Consensus 213 dlR~Al~lLeqll----~~g~~~It~d~V~~~l 241 (624)
T PRK14959 213 SVRDSMSLLGQVL----ALGESRLTIDGARGVL 241 (624)
T ss_pred CHHHHHHHHHHHH----HhcCCCcCHHHHHHHh
Confidence 6667767776542 2355689998887664
No 82
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.70 E-value=5.1e-16 Score=165.83 Aligned_cols=208 Identities=20% Similarity=0.310 Sum_probs=152.1
Q ss_pred ccCCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCC---------
Q 007190 159 VMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP--------- 229 (613)
Q Consensus 159 ~~~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~p--------- 229 (613)
+....++.+|+|++|++++++.|.+.+. .++.|+.+|||||||+|||++|+++++.+.++
T Consensus 4 ~~~~~rp~~~~~iig~~~~~~~l~~~~~-----------~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~ 72 (355)
T TIGR02397 4 LARKYRPQTFEDVIGQEHIVQTLKNAIK-----------NGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCN 72 (355)
T ss_pred HHHHhCCCcHhhccCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 3445567899999999999999988774 24567789999999999999999999987532
Q ss_pred ---------------eeEeecchhhhhhhhhhHHHHHHHHHHHHcC----CCeEEEEcCCCccccCCccCCcccHHHHHH
Q 007190 230 ---------------FFYRAGSEFEEMFVGVGARRVRSLFQAAKKK----APCIIFIDEIDAVGSTRKQWEGHTKKTLHQ 290 (613)
Q Consensus 230 ---------------fi~is~s~~~~~~~g~~~~~vr~lf~~A~~~----~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~ 290 (613)
++.+++.+ ..+...+++++..+... ...||+|||+|.+. ....+.
T Consensus 73 ~c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~----------~~~~~~ 136 (355)
T TIGR02397 73 ECESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS----------KSAFNA 136 (355)
T ss_pred CCHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC----------HHHHHH
Confidence 22222211 11233566777765432 23599999999882 346788
Q ss_pred HHHHhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCC
Q 007190 291 LLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGF 369 (613)
Q Consensus 291 LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~ 369 (613)
|+..++. +...+++|.+|+.++.+.+++++ |+ ..+.+++|+.++..++++.++++.+.. ++..+..++..+.|
T Consensus 137 Ll~~le~--~~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g- 210 (355)
T TIGR02397 137 LLKTLEE--PPEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG- 210 (355)
T ss_pred HHHHHhC--CccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 8888875 34456777778888888889987 87 578999999999999999998876543 34456777877765
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 007190 370 NGADLANLVNIAAIKAAVDGGEKLTATELEFAKD 403 (613)
Q Consensus 370 sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A~~ 403 (613)
+++.+.+.++.+...+ ...||.++++++..
T Consensus 211 ~~~~a~~~lekl~~~~----~~~it~~~v~~~~~ 240 (355)
T TIGR02397 211 SLRDALSLLDQLISFG----NGNITYEDVNELLG 240 (355)
T ss_pred ChHHHHHHHHHHHhhc----CCCCCHHHHHHHhC
Confidence 7777777777665542 34599999987653
No 83
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=2.1e-16 Score=177.13 Aligned_cols=210 Identities=20% Similarity=0.270 Sum_probs=151.1
Q ss_pred CCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCee--Eeecch--
Q 007190 162 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFF--YRAGSE-- 237 (613)
Q Consensus 162 ~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi--~is~s~-- 237 (613)
+..+.+|+||+|++.+++.|...+. ..+.|+.+||+||||+|||++|+++|+.+++..- .-.|..
T Consensus 9 k~rP~~f~divGq~~v~~~L~~~i~-----------~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~ 77 (527)
T PRK14969 9 KWRPKSFSELVGQEHVVRALTNALE-----------QQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCS 77 (527)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHH-----------cCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 4456799999999999999888775 2456778999999999999999999998865310 001110
Q ss_pred ------------hhhh--hhhhhHHHHHHHHHHHHc----CCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccc
Q 007190 238 ------------FEEM--FVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE 299 (613)
Q Consensus 238 ------------~~~~--~~g~~~~~vr~lf~~A~~----~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~ 299 (613)
+.+. -...+...++++...+.. ....|++|||+|.+ .....|.||+.++.
T Consensus 78 ~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~l----------s~~a~naLLK~LEe-- 145 (527)
T PRK14969 78 ACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHML----------SKSAFNAMLKTLEE-- 145 (527)
T ss_pred HHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccC----------CHHHHHHHHHHHhC--
Confidence 0000 001223456777766543 23469999999998 34578899999985
Q ss_pred cCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHHHH
Q 007190 300 QNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLV 378 (613)
Q Consensus 300 ~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~lv 378 (613)
+...+++|.+|+.++.+.+.+++ |+ ..+.|+.|+.++....++..+++.++. ++..+..+++.+.| +.+++.+++
T Consensus 146 pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-slr~al~ll 221 (527)
T PRK14969 146 PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SMRDALSLL 221 (527)
T ss_pred CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 44567777778888888888877 87 788999999999999998888765544 34446778887765 788888888
Q ss_pred HHHHHHHHHhCCCccCHHHHHHHH
Q 007190 379 NIAAIKAAVDGGEKLTATELEFAK 402 (613)
Q Consensus 379 ~~Aa~~A~~~~~~~It~~dl~~A~ 402 (613)
+.+... +...|+.+++...+
T Consensus 222 dqai~~----~~~~I~~~~v~~~~ 241 (527)
T PRK14969 222 DQAIAY----GGGTVNESEVRAML 241 (527)
T ss_pred HHHHHh----cCCCcCHHHHHHHH
Confidence 877543 45567777766543
No 84
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=5.7e-16 Score=173.03 Aligned_cols=204 Identities=19% Similarity=0.281 Sum_probs=147.9
Q ss_pred CCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCC-----------
Q 007190 161 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP----------- 229 (613)
Q Consensus 161 ~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~p----------- 229 (613)
...++.+|+||+|++.+++.|...+. ..+.|..+||+||||||||++|+++|+.+++.
T Consensus 8 ~KyRP~~f~diiGq~~~v~~L~~~i~-----------~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (546)
T PRK14957 8 RKYRPQSFAEVAGQQHALNSLVHALE-----------TQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKC 76 (546)
T ss_pred HHHCcCcHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence 34566899999999999998887775 24567789999999999999999999987641
Q ss_pred -------------eeEeecchhhhhhhhhhHHHHHHHHHHHHc----CCCeEEEEcCCCccccCCccCCcccHHHHHHHH
Q 007190 230 -------------FFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLL 292 (613)
Q Consensus 230 -------------fi~is~s~~~~~~~g~~~~~vr~lf~~A~~----~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL 292 (613)
++.+++.. ..+...++.+.+.+.. ....|++|||+|.+ .....+.||
T Consensus 77 ~sC~~i~~~~~~dlieidaas------~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~l----------s~~a~naLL 140 (546)
T PRK14957 77 ENCVAINNNSFIDLIEIDAAS------RTGVEETKEILDNIQYMPSQGRYKVYLIDEVHML----------SKQSFNALL 140 (546)
T ss_pred HHHHHHhcCCCCceEEeeccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhc----------cHHHHHHHH
Confidence 22222211 0122344555544432 33569999999998 346788999
Q ss_pred HHhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCH
Q 007190 293 VEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNG 371 (613)
Q Consensus 293 ~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sg 371 (613)
..|+. +...+++|.+|+.+..+.+.+++ |+ ..+.|.+++.++....++..+++.++. ++..+..+++.+.| +.
T Consensus 141 K~LEe--pp~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G-dl 214 (546)
T PRK14957 141 KTLEE--PPEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG-SL 214 (546)
T ss_pred HHHhc--CCCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 99984 44556677777778888888887 88 789999999999998898888765544 44457788887764 78
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 007190 372 ADLANLVNIAAIKAAVDGGEKLTATELEFA 401 (613)
Q Consensus 372 adL~~lv~~Aa~~A~~~~~~~It~~dl~~A 401 (613)
+++.++++.+.... + ..|+.++++.+
T Consensus 215 R~alnlLek~i~~~---~-~~It~~~V~~~ 240 (546)
T PRK14957 215 RDALSLLDQAISFC---G-GELKQAQIKQM 240 (546)
T ss_pred HHHHHHHHHHHHhc---c-CCCCHHHHHHH
Confidence 88888887766432 2 56888777764
No 85
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.69 E-value=6.6e-16 Score=181.68 Aligned_cols=219 Identities=22% Similarity=0.253 Sum_probs=153.8
Q ss_pred CCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc----------CCCeeE
Q 007190 163 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFY 232 (613)
Q Consensus 163 ~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~----------~~pfi~ 232 (613)
-...++++++|.++. +++++..|... ...+++|+||||||||++|+.+|... +..++.
T Consensus 181 ~r~~~ld~~iGr~~e---i~~~i~~l~r~---------~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~ 248 (852)
T TIGR03345 181 AREGKIDPVLGRDDE---IRQMIDILLRR---------RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLS 248 (852)
T ss_pred hcCCCCCcccCCHHH---HHHHHHHHhcC---------CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEE
Confidence 345689999999986 55555443332 12378999999999999999999975 244777
Q ss_pred eecchhh--hhhhhhhHHHHHHHHHHHHc-CCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEee
Q 007190 233 RAGSEFE--EMFVGVGARRVRSLFQAAKK-KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAA 309 (613)
Q Consensus 233 is~s~~~--~~~~g~~~~~vr~lf~~A~~-~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaa 309 (613)
++.+.+. ..|.|..+.+++.+|..++. ..++||||||+|.+.+.++.... ...-|-|+..+ .+..+.+|||
T Consensus 249 l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~--~d~~n~Lkp~l----~~G~l~~Iga 322 (852)
T TIGR03345 249 LDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQ--GDAANLLKPAL----ARGELRTIAA 322 (852)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcccc--ccHHHHhhHHh----hCCCeEEEEe
Confidence 7777665 35788999999999999865 46899999999999776543211 11223333333 3677999999
Q ss_pred cCCCC-----CCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCC----C-CChhcHHHHHhcCCCCC-----HHHH
Q 007190 310 TNLPD-----ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKP----L-ADDVDVKAIARGTPGFN-----GADL 374 (613)
Q Consensus 310 TN~p~-----~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~----l-~~d~dl~~la~~t~G~s-----gadL 374 (613)
|+..+ .+|++|.| || ..|.++.|+.+++..||+.+.+... + ..+..+..++..+.+|- |...
T Consensus 323 TT~~e~~~~~~~d~AL~r--Rf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKA 399 (852)
T TIGR03345 323 TTWAEYKKYFEKDPALTR--RF-QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKA 399 (852)
T ss_pred cCHHHHhhhhhccHHHHH--hC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHH
Confidence 99743 48999999 99 4899999999999999876654322 1 14555777777776653 4556
Q ss_pred HHHHHHHHHHHHHh-CCCccCHHHHHHHH
Q 007190 375 ANLVNIAAIKAAVD-GGEKLTATELEFAK 402 (613)
Q Consensus 375 ~~lv~~Aa~~A~~~-~~~~It~~dl~~A~ 402 (613)
..++++|+...... ....+..++++..+
T Consensus 400 Idlldea~a~~~~~~~~~p~~~~~~~~~~ 428 (852)
T TIGR03345 400 VSLLDTACARVALSQNATPAALEDLRRRI 428 (852)
T ss_pred HHHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 67788876655443 34445555554443
No 86
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.69 E-value=1.8e-15 Score=151.24 Aligned_cols=204 Identities=19% Similarity=0.250 Sum_probs=135.7
Q ss_pred CCCCcccC--CCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhh
Q 007190 165 VKTFKDVK--GCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFE 239 (613)
Q Consensus 165 ~~~f~dV~--G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~ 239 (613)
..+|++.+ +.+.+.+.+++++. ...+.+++|+||||||||++|+++++++ +.++++++++.+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAA------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 35788887 34556666665542 2335689999999999999999999876 5789999998875
Q ss_pred hhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCCCCC--
Q 007190 240 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILD-- 317 (613)
Q Consensus 240 ~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld-- 317 (613)
... .+++.... .+.+|+|||+|.+.... .....+..++..+. .....+|++++..+..++
T Consensus 79 ~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~~-----~~~~~L~~~l~~~~---~~~~~iIits~~~~~~~~~~ 140 (226)
T TIGR03420 79 QAD--------PEVLEGLE--QADLVCLDDVEAIAGQP-----EWQEALFHLYNRVR---EAGGRLLIAGRAAPAQLPLR 140 (226)
T ss_pred HhH--------HHHHhhcc--cCCEEEEeChhhhcCCh-----HHHHHHHHHHHHHH---HcCCeEEEECCCChHHCCcc
Confidence 432 23333222 23599999999984321 01233334443332 222345554444444332
Q ss_pred -hhhcCCCcc--ceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCcc
Q 007190 318 -PALTRPGRF--DRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKL 393 (613)
Q Consensus 318 -~aLlRpgRF--d~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~I 393 (613)
+.+.+ || ..++.+|+|+.+++..+++.++.+..+. ++..+..|++..+ -+.+++.++++++...+.. ++..|
T Consensus 141 ~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~-gn~r~L~~~l~~~~~~~~~-~~~~i 216 (226)
T TIGR03420 141 LPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGS-RDMGSLMALLDALDRASLA-AKRKI 216 (226)
T ss_pred cHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHH-hCCCC
Confidence 66776 66 4689999999999999999887655443 3444778888655 4899999999987765444 44579
Q ss_pred CHHHHHHHH
Q 007190 394 TATELEFAK 402 (613)
Q Consensus 394 t~~dl~~A~ 402 (613)
|.+.+.+.+
T Consensus 217 ~~~~~~~~~ 225 (226)
T TIGR03420 217 TIPFVKEVL 225 (226)
T ss_pred CHHHHHHHh
Confidence 988776653
No 87
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.69 E-value=6.5e-16 Score=157.10 Aligned_cols=200 Identities=22% Similarity=0.246 Sum_probs=139.9
Q ss_pred ccCCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCC------eeE
Q 007190 159 VMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------FFY 232 (613)
Q Consensus 159 ~~~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~p------fi~ 232 (613)
|...+.+++|+|++|++.+++.|...+.. ...| ++|||||||||||+.|+++|++++.| +..
T Consensus 26 wteKYrPkt~de~~gQe~vV~~L~~a~~~-----------~~lp-~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ 93 (346)
T KOG0989|consen 26 WTEKYRPKTFDELAGQEHVVQVLKNALLR-----------RILP-HYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLE 93 (346)
T ss_pred hHHHhCCCcHHhhcchHHHHHHHHHHHhh-----------cCCc-eEEeeCCCCCcHhHHHHHHHHHhcCccccccchhh
Confidence 56678889999999999999999887752 2234 79999999999999999999999763 344
Q ss_pred eecchhhhhhhhhhHHHHHHHHHHHHc------CCC----eEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCC
Q 007190 233 RAGSEFEEMFVGVGARRVRSLFQAAKK------KAP----CIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNE 302 (613)
Q Consensus 233 is~s~~~~~~~g~~~~~vr~lf~~A~~------~~P----~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~ 302 (613)
.+.|+....-+ ...+++. |.+... ..| .|++|||.|.+ ...+.+.|.+.|+.+...
T Consensus 94 lnaSderGisv--vr~Kik~-fakl~~~~~~~~~~~~~~fKiiIlDEcdsm----------tsdaq~aLrr~mE~~s~~- 159 (346)
T KOG0989|consen 94 LNASDERGISV--VREKIKN-FAKLTVLLKRSDGYPCPPFKIIILDECDSM----------TSDAQAALRRTMEDFSRT- 159 (346)
T ss_pred hcccccccccc--hhhhhcC-HHHHhhccccccCCCCCcceEEEEechhhh----------hHHHHHHHHHHHhccccc-
Confidence 45555433221 1112221 222211 112 59999999999 456788899999976554
Q ss_pred ceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChh-cHHHHHhcCCCCCHHHHHHHHHHH
Q 007190 303 GIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDV-DVKAIARGTPGFNGADLANLVNIA 381 (613)
Q Consensus 303 ~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~-dl~~la~~t~G~sgadL~~lv~~A 381 (613)
+++|..||+++.|++.+.+ |+ ..+.|+....+.....|+..+.+.++.-+. .+..|+..+.| +-++....++.+
T Consensus 160 -trFiLIcnylsrii~pi~S--RC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G-dLR~Ait~Lqsl 234 (346)
T KOG0989|consen 160 -TRFILICNYLSRIIRPLVS--RC-QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG-DLRRAITTLQSL 234 (346)
T ss_pred -eEEEEEcCChhhCChHHHh--hH-HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-cHHHHHHHHHHh
Confidence 5667779999999999988 88 456777777777788888888877766443 47788886655 444444444444
Q ss_pred HHHHHHhCCCccC
Q 007190 382 AIKAAVDGGEKLT 394 (613)
Q Consensus 382 a~~A~~~~~~~It 394 (613)
.. ..+.||
T Consensus 235 s~-----~gk~It 242 (346)
T KOG0989|consen 235 SL-----LGKRIT 242 (346)
T ss_pred hc-----cCcccc
Confidence 33 455666
No 88
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=1.1e-15 Score=172.16 Aligned_cols=204 Identities=20% Similarity=0.248 Sum_probs=150.1
Q ss_pred CCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCC------------
Q 007190 162 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------ 229 (613)
Q Consensus 162 ~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~p------------ 229 (613)
..++.+|+||+|++.+++.|+..+. .++.|+.+||+||+|||||++|+++|+.+++.
T Consensus 6 kyRP~~f~eivGq~~i~~~L~~~i~-----------~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 74 (584)
T PRK14952 6 KYRPATFAEVVGQEHVTEPLSSALD-----------AGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCE 74 (584)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccH
Confidence 4556799999999999999988875 35678789999999999999999999987642
Q ss_pred --------------eeEeecchhhhhhhhhhHHHHHHHHHHHH----cCCCeEEEEcCCCccccCCccCCcccHHHHHHH
Q 007190 230 --------------FFYRAGSEFEEMFVGVGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQL 291 (613)
Q Consensus 230 --------------fi~is~s~~~~~~~g~~~~~vr~lf~~A~----~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~L 291 (613)
++.++++. ..+...++++.+.+. .....|++|||+|.+ .....|.|
T Consensus 75 ~C~~i~~~~~~~~dvieidaas------~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~L----------t~~A~NAL 138 (584)
T PRK14952 75 SCVALAPNGPGSIDVVELDAAS------HGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMV----------TTAGFNAL 138 (584)
T ss_pred HHHHhhcccCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcC----------CHHHHHHH
Confidence 11222211 012334455444432 223459999999999 34578899
Q ss_pred HHHhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCC
Q 007190 292 LVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFN 370 (613)
Q Consensus 292 L~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~s 370 (613)
|..|+. ....+++|.+|+.++.|.+.+++ |+ .++.|..++.++..+.++.++++.+.. ++..+..+++.+.| +
T Consensus 139 LK~LEE--pp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~G-d 212 (584)
T PRK14952 139 LKIVEE--PPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGG-S 212 (584)
T ss_pred HHHHhc--CCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 999994 55577888888888999999988 76 688999999999999999988876653 34446677776654 7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 007190 371 GADLANLVNIAAIKAAVDGGEKLTATELEFA 401 (613)
Q Consensus 371 gadL~~lv~~Aa~~A~~~~~~~It~~dl~~A 401 (613)
.+++.++++..... .+...||.+++...
T Consensus 213 lR~aln~Ldql~~~---~~~~~It~~~v~~l 240 (584)
T PRK14952 213 PRDTLSVLDQLLAG---AADTHVTYQRALGL 240 (584)
T ss_pred HHHHHHHHHHHHhc---cCCCCcCHHHHHHH
Confidence 88888888876533 23567888777654
No 89
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.68 E-value=1.9e-15 Score=159.06 Aligned_cols=207 Identities=21% Similarity=0.276 Sum_probs=137.5
Q ss_pred cccCCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecch
Q 007190 158 EVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE 237 (613)
Q Consensus 158 ~~~~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~ 237 (613)
.+....++.+|+|++|++++++.+...+. .++.|..+||+||||+|||++|++++++.+.+++++++++
T Consensus 10 ~w~~kyrP~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~ 78 (316)
T PHA02544 10 MWEQKYRPSTIDECILPAADKETFKSIVK-----------KGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD 78 (316)
T ss_pred cceeccCCCcHHHhcCcHHHHHHHHHHHh-----------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc
Confidence 45667788899999999999998888775 2456777888999999999999999999999999999886
Q ss_pred hhhhhhhhhHHHHHHHHHHHH-cCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCCCC
Q 007190 238 FEEMFVGVGARRVRSLFQAAK-KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 316 (613)
Q Consensus 238 ~~~~~~g~~~~~vr~lf~~A~-~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~L 316 (613)
.. .......+........ ...+++|+|||+|.+... ...+.|...++.. ..++.+|.+||.+..+
T Consensus 79 -~~--~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~---------~~~~~L~~~le~~--~~~~~~Ilt~n~~~~l 144 (316)
T PHA02544 79 -CR--IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA---------DAQRHLRSFMEAY--SKNCSFIITANNKNGI 144 (316)
T ss_pred -cc--HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH---------HHHHHHHHHHHhc--CCCceEEEEcCChhhc
Confidence 21 1111122222221111 134689999999988321 1223344445543 3456778899999999
Q ss_pred ChhhcCCCccceEEEccCCCHhhHHHHHHHHhcc-------CCCC-ChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 007190 317 DPALTRPGRFDRHIVVPNPDVRGRQEILELYLQD-------KPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVD 388 (613)
Q Consensus 317 d~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~-------~~l~-~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~ 388 (613)
++++++ || ..+.++.|+.+++.++++.++.. .+.. ++..+..+++...| |++.+++.....+.
T Consensus 145 ~~~l~s--R~-~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~----d~r~~l~~l~~~~~-- 215 (316)
T PHA02544 145 IEPLRS--RC-RVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFP----DFRRTINELQRYAS-- 215 (316)
T ss_pred hHHHHh--hc-eEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC----CHHHHHHHHHHHHc--
Confidence 999998 88 57899999999998887654332 1221 22234666664433 45555554443321
Q ss_pred CCCccCHHHHH
Q 007190 389 GGEKLTATELE 399 (613)
Q Consensus 389 ~~~~It~~dl~ 399 (613)
...++..++.
T Consensus 216 -~~~i~~~~l~ 225 (316)
T PHA02544 216 -TGKIDAGILS 225 (316)
T ss_pred -cCCCCHHHHH
Confidence 2456766654
No 90
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.68 E-value=1.6e-15 Score=174.77 Aligned_cols=214 Identities=23% Similarity=0.256 Sum_probs=144.8
Q ss_pred cccCCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecch
Q 007190 158 EVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE 237 (613)
Q Consensus 158 ~~~~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~ 237 (613)
++....++.+|+|++|+++.......+...+.. .+.| +++||||||||||++|+++|+..+.+|+.+++..
T Consensus 17 PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~--------~~~~-slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~ 87 (725)
T PRK13341 17 PLADRLRPRTLEEFVGQDHILGEGRLLRRAIKA--------DRVG-SLILYGPPGVGKTTLARIIANHTRAHFSSLNAVL 87 (725)
T ss_pred ChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhc--------CCCc-eEEEECCCCCCHHHHHHHHHHHhcCcceeehhhh
Confidence 444556678999999999987543333222221 2233 7999999999999999999999999999888753
Q ss_pred hhhhhhhhhHHHHHHHHHHHH-----cCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCC
Q 007190 238 FEEMFVGVGARRVRSLFQAAK-----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNL 312 (613)
Q Consensus 238 ~~~~~~g~~~~~vr~lf~~A~-----~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~ 312 (613)
.. .+.++..+..+. .....+|||||+|.+. ....+.|+..++ +..+++|++|+.
T Consensus 88 ~~-------i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln----------~~qQdaLL~~lE----~g~IiLI~aTTe 146 (725)
T PRK13341 88 AG-------VKDLRAEVDRAKERLERHGKRTILFIDEVHRFN----------KAQQDALLPWVE----NGTITLIGATTE 146 (725)
T ss_pred hh-------hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCC----------HHHHHHHHHHhc----CceEEEEEecCC
Confidence 11 122333333331 1345699999999983 223445666555 345777776643
Q ss_pred --CCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhcc-------CCCC-ChhcHHHHHhcCCCCCHHHHHHHHHHHH
Q 007190 313 --PDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQD-------KPLA-DDVDVKAIARGTPGFNGADLANLVNIAA 382 (613)
Q Consensus 313 --p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~-------~~l~-~d~dl~~la~~t~G~sgadL~~lv~~Aa 382 (613)
...+++++++ |+ ..+.+++++.+++..+++.++.. ..+. ++..+..|++.++| +.+++.++++.+.
T Consensus 147 np~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a~ 222 (725)
T PRK13341 147 NPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELAV 222 (725)
T ss_pred ChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 2468899987 65 57899999999999999998862 2222 34457888888765 6788888888766
Q ss_pred HHHHHhCC--CccCHHHHHHHHHHH
Q 007190 383 IKAAVDGG--EKLTATELEFAKDRI 405 (613)
Q Consensus 383 ~~A~~~~~--~~It~~dl~~A~~~v 405 (613)
..+..... ..||.+++++++.+.
T Consensus 223 ~~~~~~~~~~i~It~~~~~e~l~~~ 247 (725)
T PRK13341 223 ESTPPDEDGLIDITLAIAEESIQQR 247 (725)
T ss_pred HhcccCCCCceeccHHHHHHHHHHh
Confidence 43322222 237888888877653
No 91
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.68 E-value=5.2e-15 Score=160.49 Aligned_cols=222 Identities=20% Similarity=0.254 Sum_probs=153.8
Q ss_pred CCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc-----CCCeeEeecchhhhh
Q 007190 167 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAGSEFEEM 241 (613)
Q Consensus 167 ~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~-----~~pfi~is~s~~~~~ 241 (613)
..+.++|.++..++|...+..... ...|.+++|+||||||||++++.+++++ ++++++++|......
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~--------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~ 99 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALR--------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTR 99 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhC--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCH
Confidence 456789999887777776643111 2334579999999999999999999876 578999998644221
Q ss_pred ----------hhh-------hh-HHHHHHHHHHHHc-CCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCC
Q 007190 242 ----------FVG-------VG-ARRVRSLFQAAKK-KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNE 302 (613)
Q Consensus 242 ----------~~g-------~~-~~~vr~lf~~A~~-~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~ 302 (613)
..+ .. ......+.+.... ..+.||+|||+|.+... .....+..|+..++... ..
T Consensus 100 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~------~~~~~l~~l~~~~~~~~-~~ 172 (394)
T PRK00411 100 YAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEK------EGNDVLYSLLRAHEEYP-GA 172 (394)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhcc------CCchHHHHHHHhhhccC-CC
Confidence 111 01 1222333333332 45689999999999621 12356777777666543 23
Q ss_pred ceEEEeecCCCC---CCChhhcCCCccc-eEEEccCCCHhhHHHHHHHHhccC---CCCChhcHHHHHhcCCCC--CHHH
Q 007190 303 GIILMAATNLPD---ILDPALTRPGRFD-RHIVVPNPDVRGRQEILELYLQDK---PLADDVDVKAIARGTPGF--NGAD 373 (613)
Q Consensus 303 ~ViVIaaTN~p~---~Ld~aLlRpgRFd-~~I~v~~Pd~~~R~~IL~~~l~~~---~l~~d~dl~~la~~t~G~--sgad 373 (613)
++.+|+++|.++ .+++.+.+ ||. ..|.+++++.++..+|++.++... ...++..++.+++.+.+. ..+.
T Consensus 173 ~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~ 250 (394)
T PRK00411 173 RIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARV 250 (394)
T ss_pred eEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHH
Confidence 678888888653 56777766 664 578999999999999999988542 122344466777766332 3456
Q ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 007190 374 LANLVNIAAIKAAVDGGEKLTATELEFAKDRI 405 (613)
Q Consensus 374 L~~lv~~Aa~~A~~~~~~~It~~dl~~A~~~v 405 (613)
+.++|..|+..|..++...|+.+|+..|++++
T Consensus 251 a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 251 AIDLLRRAGLIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 66888989888988888999999999999887
No 92
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.68 E-value=3.4e-15 Score=150.05 Aligned_cols=203 Identities=15% Similarity=0.127 Sum_probs=135.6
Q ss_pred CCCCCCCcccC--CCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecc
Q 007190 162 EKNVKTFKDVK--GCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGS 236 (613)
Q Consensus 162 ~~~~~~f~dV~--G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s 236 (613)
..+..+|++++ +.+++...++++.. +...+.+++|+||||||||+||+++++++ +.+++++++.
T Consensus 11 ~~~~~~~d~f~~~~~~~~~~~l~~~~~-----------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~ 79 (227)
T PRK08903 11 PPPPPTFDNFVAGENAELVARLRELAA-----------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA 79 (227)
T ss_pred CCChhhhcccccCCcHHHHHHHHHHHh-----------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH
Confidence 34457899977 34556555555443 22334589999999999999999999875 6788999887
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCC-CC-
Q 007190 237 EFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNL-PD- 314 (613)
Q Consensus 237 ~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~-p~- 314 (613)
++...+ . ....+.+|+|||+|.+.. ..... |+..++....+...++|.+++. |.
T Consensus 80 ~~~~~~------------~--~~~~~~~liiDdi~~l~~-------~~~~~---L~~~~~~~~~~~~~~vl~~~~~~~~~ 135 (227)
T PRK08903 80 SPLLAF------------D--FDPEAELYAVDDVERLDD-------AQQIA---LFNLFNRVRAHGQGALLVAGPAAPLA 135 (227)
T ss_pred HhHHHH------------h--hcccCCEEEEeChhhcCc-------hHHHH---HHHHHHHHHHcCCcEEEEeCCCCHHh
Confidence 754321 1 112356999999998832 12333 3334443333444334444443 32
Q ss_pred -CCChhhcCCCcc--ceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC
Q 007190 315 -ILDPALTRPGRF--DRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGG 390 (613)
Q Consensus 315 -~Ld~aLlRpgRF--d~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~ 390 (613)
.+.+.+.+ || ...+.+++|+.+++..+++.++.+..+. ++..+..|++..+| +.+++.++++.....| ...+
T Consensus 136 ~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~~~-~~~~ 211 (227)
T PRK08903 136 LPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDRYS-LEQK 211 (227)
T ss_pred CCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHH-HHhC
Confidence 34566775 77 4699999999999999998887665444 34457788886665 8899999998755444 3445
Q ss_pred CccCHHHHHHHHH
Q 007190 391 EKLTATELEFAKD 403 (613)
Q Consensus 391 ~~It~~dl~~A~~ 403 (613)
..||...+.+++.
T Consensus 212 ~~i~~~~~~~~l~ 224 (227)
T PRK08903 212 RPVTLPLLREMLA 224 (227)
T ss_pred CCCCHHHHHHHHh
Confidence 7899998887753
No 93
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=1.4e-15 Score=177.37 Aligned_cols=210 Identities=20% Similarity=0.192 Sum_probs=148.4
Q ss_pred CCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCee-----Eeec
Q 007190 161 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFF-----YRAG 235 (613)
Q Consensus 161 ~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi-----~is~ 235 (613)
.++.+.+|+||+|++.+++.|+..+. ..+.++.+||+||+|||||++|++||+.+++.-- .-.|
T Consensus 7 ~KyRP~~f~eiiGqe~v~~~L~~~i~-----------~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C 75 (824)
T PRK07764 7 RRYRPATFAEVIGQEHVTEPLSTALD-----------SGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC 75 (824)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHH-----------hCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc
Confidence 34566899999999999999888775 2567778999999999999999999999875210 0001
Q ss_pred chhhhhh------------hh---hhHHHHHHHHHHH----HcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhh
Q 007190 236 SEFEEMF------------VG---VGARRVRSLFQAA----KKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMD 296 (613)
Q Consensus 236 s~~~~~~------------~g---~~~~~vr~lf~~A----~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ld 296 (613)
..+.... .+ .+...+|++-+.+ ......|+||||+|.| .....|.||+.|+
T Consensus 76 ~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~l----------t~~a~NaLLK~LE 145 (824)
T PRK07764 76 DSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMV----------TPQGFNALLKIVE 145 (824)
T ss_pred HHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhc----------CHHHHHHHHHHHh
Confidence 1111100 00 1123344443332 2344579999999999 3567889999998
Q ss_pred ccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHH
Q 007190 297 GFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLA 375 (613)
Q Consensus 297 g~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~ 375 (613)
. ....+++|.+|+.++.|.+.|++ |+ .++.|..++.++..++|+..+++.++. ++..+..|++.+.| +.+++.
T Consensus 146 E--pP~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-dlR~Al 219 (824)
T PRK07764 146 E--PPEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-SVRDSL 219 (824)
T ss_pred C--CCCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 5 44567777778888888888988 77 788999999999999999988776654 34446777777765 778888
Q ss_pred HHHHHHHHHHHHhCCCccCHHHHHH
Q 007190 376 NLVNIAAIKAAVDGGEKLTATELEF 400 (613)
Q Consensus 376 ~lv~~Aa~~A~~~~~~~It~~dl~~ 400 (613)
++++..... .+...||.+++..
T Consensus 220 ~eLEKLia~---~~~~~IT~e~V~a 241 (824)
T PRK07764 220 SVLDQLLAG---AGPEGVTYERAVA 241 (824)
T ss_pred HHHHHHHhh---cCCCCCCHHHHHH
Confidence 888765522 2355688877654
No 94
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=1.1e-15 Score=173.30 Aligned_cols=203 Identities=19% Similarity=0.301 Sum_probs=151.7
Q ss_pred CCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCC------------
Q 007190 162 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------ 229 (613)
Q Consensus 162 ~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~p------------ 229 (613)
..++.+|+||+|++++++.|...+. .++.|+.+|||||||+|||++|+++|+.++++
T Consensus 9 k~RP~~f~~iiGq~~v~~~L~~~i~-----------~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~ 77 (576)
T PRK14965 9 KYRPQTFSDLTGQEHVSRTLQNAID-----------TGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCP 77 (576)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccH
Confidence 4456799999999999999988775 24678889999999999999999999987653
Q ss_pred ------------eeEeecchhhhhhhhhhHHHHHHHHHHHHcC----CCeEEEEcCCCccccCCccCCcccHHHHHHHHH
Q 007190 230 ------------FFYRAGSEFEEMFVGVGARRVRSLFQAAKKK----APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLV 293 (613)
Q Consensus 230 ------------fi~is~s~~~~~~~g~~~~~vr~lf~~A~~~----~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~ 293 (613)
++++++.+ ..+...++++...+... ...|++|||+|.+ .....|.|+.
T Consensus 78 ~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~L----------t~~a~naLLk 141 (576)
T PRK14965 78 PCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHML----------STNAFNALLK 141 (576)
T ss_pred HHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhC----------CHHHHHHHHH
Confidence 22222211 12234566766665422 2359999999998 3457889999
Q ss_pred HhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHH
Q 007190 294 EMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGA 372 (613)
Q Consensus 294 ~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sga 372 (613)
.|+. +...+++|.+|+.++.|.+.+++ |+ ..+.|..++.++....++..+++.++. ++..+..+++.+.| +.+
T Consensus 142 ~LEe--pp~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~lr 215 (576)
T PRK14965 142 TLEE--PPPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-SMR 215 (576)
T ss_pred HHHc--CCCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHH
Confidence 9984 45577888888889999999987 77 588899999999998898888776654 44557888888876 777
Q ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 007190 373 DLANLVNIAAIKAAVDGGEKLTATELEFA 401 (613)
Q Consensus 373 dL~~lv~~Aa~~A~~~~~~~It~~dl~~A 401 (613)
++.++++.+.... ...||.+++...
T Consensus 216 ~al~~Ldqliay~----g~~It~edV~~l 240 (576)
T PRK14965 216 DSLSTLDQVLAFC----GDAVGDDDVAEL 240 (576)
T ss_pred HHHHHHHHHHHhc----cCCCCHHHHHHH
Confidence 8888877655432 245888887654
No 95
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=2e-15 Score=167.50 Aligned_cols=213 Identities=21% Similarity=0.291 Sum_probs=150.1
Q ss_pred ccCCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCC-------Cee
Q 007190 159 VMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV-------PFF 231 (613)
Q Consensus 159 ~~~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~-------pfi 231 (613)
+....++.+|+|++|++.+++.|+..+. ..+.++.+|||||||+|||++|+.+|+.+++ |+-
T Consensus 6 ~~~kyRP~~f~diiGq~~i~~~L~~~i~-----------~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~ 74 (486)
T PRK14953 6 FARKYRPKFFKEVIGQEIVVRILKNAVK-----------LQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCG 74 (486)
T ss_pred HHHhhCCCcHHHccChHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCC
Confidence 3445667899999999999998888775 2456777899999999999999999998764 111
Q ss_pred Ee-ecchhhh-----hh-----hhhhHHHHHHHHHHHHc----CCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhh
Q 007190 232 YR-AGSEFEE-----MF-----VGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMD 296 (613)
Q Consensus 232 ~i-s~s~~~~-----~~-----~g~~~~~vr~lf~~A~~----~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ld 296 (613)
.+ +|..+.. .+ ...+...++.+.+.+.. ..+.|++|||+|.+. ....+.|+..++
T Consensus 75 ~c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt----------~~a~naLLk~LE 144 (486)
T PRK14953 75 KCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT----------KEAFNALLKTLE 144 (486)
T ss_pred ccHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC----------HHHHHHHHHHHh
Confidence 11 1111100 00 01123345555555432 335699999999882 456788888888
Q ss_pred ccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHH
Q 007190 297 GFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLA 375 (613)
Q Consensus 297 g~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~ 375 (613)
. +...+++|.+|+.++.+++++.+ |+ ..+.|++|+.++...+++.+++..++. ++..+..++..+.| +.+++.
T Consensus 145 e--pp~~~v~Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~lr~al 218 (486)
T PRK14953 145 E--PPPRTIFILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GMRDAA 218 (486)
T ss_pred c--CCCCeEEEEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 5 34455666667778888888887 77 478999999999999999998876654 33447778887765 678888
Q ss_pred HHHHHHHHHHHHhCCCccCHHHHHHHH
Q 007190 376 NLVNIAAIKAAVDGGEKLTATELEFAK 402 (613)
Q Consensus 376 ~lv~~Aa~~A~~~~~~~It~~dl~~A~ 402 (613)
++++.+... +...||.+++..++
T Consensus 219 ~~Ldkl~~~----~~~~It~~~V~~~l 241 (486)
T PRK14953 219 SLLDQASTY----GEGKVTIKVVEEFL 241 (486)
T ss_pred HHHHHHHHh----cCCCcCHHHHHHHh
Confidence 888776543 34578888887754
No 96
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=2.1e-15 Score=171.89 Aligned_cols=213 Identities=23% Similarity=0.309 Sum_probs=155.3
Q ss_pred ccCCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCee---Eeec
Q 007190 159 VMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFF---YRAG 235 (613)
Q Consensus 159 ~~~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi---~is~ 235 (613)
+....++.+|+||+|++.+++.|+..+. ..+.|+.+||+||||||||++|+++|+.+.++-- .-.|
T Consensus 8 l~~KyRP~~f~dIiGQe~~v~~L~~aI~-----------~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC 76 (725)
T PRK07133 8 LYRKYRPKTFDDIVGQDHIVQTLKNIIK-----------SNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPC 76 (725)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCch
Confidence 3445677899999999999999988875 2467788999999999999999999998765311 0111
Q ss_pred chhhhh-------h--h---hhhHHHHHHHHHHHHc----CCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccc
Q 007190 236 SEFEEM-------F--V---GVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE 299 (613)
Q Consensus 236 s~~~~~-------~--~---g~~~~~vr~lf~~A~~----~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~ 299 (613)
..+... + - ..+...++.+.+.+.. ....|++|||+|.+. ...++.||..|+.
T Consensus 77 ~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT----------~~A~NALLKtLEE-- 144 (725)
T PRK07133 77 QECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS----------KSAFNALLKTLEE-- 144 (725)
T ss_pred hHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC----------HHHHHHHHHHhhc--
Confidence 111100 0 0 1224457777766653 334699999999982 3578899999984
Q ss_pred cCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHHHH
Q 007190 300 QNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLV 378 (613)
Q Consensus 300 ~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~lv 378 (613)
+...+++|.+|+.++.|.+.+++ |+ .++.|.+|+.++...+++..+.+.++. ++..+..+++.+.| +.+++.+++
T Consensus 145 PP~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~AlslL 220 (725)
T PRK07133 145 PPKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDALSIA 220 (725)
T ss_pred CCCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 45667888888889999999988 88 589999999999999999888766554 33347778887775 778888888
Q ss_pred HHHHHHHHHhCCCccCHHHHHHHH
Q 007190 379 NIAAIKAAVDGGEKLTATELEFAK 402 (613)
Q Consensus 379 ~~Aa~~A~~~~~~~It~~dl~~A~ 402 (613)
+.+... +...|+.+++...+
T Consensus 221 ekl~~y----~~~~It~e~V~ell 240 (725)
T PRK07133 221 EQVSIF----GNNKITLKNVEELF 240 (725)
T ss_pred HHHHHh----ccCCCCHHHHHHHH
Confidence 766543 23458888887653
No 97
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.67 E-value=4.6e-15 Score=166.26 Aligned_cols=191 Identities=19% Similarity=0.262 Sum_probs=136.4
Q ss_pred eEEEEccCCChHHHHHHHHHHhc-----CCCeeEeecchhhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCc
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRK 278 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~-----~~pfi~is~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~ 278 (613)
.++|||++|||||+|++++++++ +..++++++.+|...+.........+.|..-. ..+++|+||||+.+..+.
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gke- 393 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDKE- 393 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCCH-
Confidence 59999999999999999999976 56789999999887765443332223343322 246899999999995442
Q ss_pred cCCcccHHHHHHHHHHhhccccCCceEEEeecCCCC---CCChhhcCCCccce--EEEccCCCHhhHHHHHHHHhccCCC
Q 007190 279 QWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD---ILDPALTRPGRFDR--HIVVPNPDVRGRQEILELYLQDKPL 353 (613)
Q Consensus 279 ~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~---~Ld~aLlRpgRFd~--~I~v~~Pd~~~R~~IL~~~l~~~~l 353 (613)
.+...|+..++....+.+-+||++...|. .+++.|.+ ||.. .+.+..||.+.|.+||+..+....+
T Consensus 394 -------~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l 464 (617)
T PRK14086 394 -------STQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQL 464 (617)
T ss_pred -------HHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 22233444444333333445554444443 56888988 8866 7799999999999999999987766
Q ss_pred C-ChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhc
Q 007190 354 A-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRILM 407 (613)
Q Consensus 354 ~-~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A~~~v~~ 407 (613)
. ++.-+..|+....+ +.++|..++++....+...+ ..||.+.++++++.++.
T Consensus 465 ~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a~~~~-~~itl~la~~vL~~~~~ 517 (617)
T PRK14086 465 NAPPEVLEFIASRISR-NIRELEGALIRVTAFASLNR-QPVDLGLTEIVLRDLIP 517 (617)
T ss_pred CCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHhhc
Confidence 5 34447778887764 78999999988766665544 67999999998877654
No 98
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=2e-15 Score=169.08 Aligned_cols=206 Identities=17% Similarity=0.232 Sum_probs=150.3
Q ss_pred ccCCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCC---------
Q 007190 159 VMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP--------- 229 (613)
Q Consensus 159 ~~~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~p--------- 229 (613)
+....++.+|++|+|++.+++.|...+. ..+.|+++||+||||+|||++|+++|+.+.+.
T Consensus 6 ~~~KyRP~~F~dIIGQe~iv~~L~~aI~-----------~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg 74 (605)
T PRK05896 6 FYRKYRPHNFKQIIGQELIKKILVNAIL-----------NNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCN 74 (605)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCc
Confidence 3345567899999999999998887764 35677889999999999999999999987531
Q ss_pred ---------------eeEeecchhhhhhhhhhHHHHHHHHHHHHcC----CCeEEEEcCCCccccCCccCCcccHHHHHH
Q 007190 230 ---------------FFYRAGSEFEEMFVGVGARRVRSLFQAAKKK----APCIIFIDEIDAVGSTRKQWEGHTKKTLHQ 290 (613)
Q Consensus 230 ---------------fi~is~s~~~~~~~g~~~~~vr~lf~~A~~~----~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~ 290 (613)
++.++++. ..+...++.+...+... ...|++|||+|.+. ....+.
T Consensus 75 ~C~sCr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt----------~~A~Na 138 (605)
T PRK05896 75 SCSVCESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS----------TSAWNA 138 (605)
T ss_pred ccHHHHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC----------HHHHHH
Confidence 12222211 12234466666555432 23599999999982 346788
Q ss_pred HHHHhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCC
Q 007190 291 LLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGF 369 (613)
Q Consensus 291 LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~ 369 (613)
|+..|+. +...+++|.+|+.+..|.+.+++ |+ ..+.|++|+.++....++..+.+.+.. ++..+..++..+.|
T Consensus 139 LLKtLEE--Pp~~tvfIL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G- 212 (605)
T PRK05896 139 LLKTLEE--PPKHVVFIFATTEFQKIPLTIIS--RC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG- 212 (605)
T ss_pred HHHHHHh--CCCcEEEEEECCChHhhhHHHHh--hh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 9998884 44567888888889999999988 88 478999999999999999888765542 34457778887765
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 007190 370 NGADLANLVNIAAIKAAVDGGEKLTATELEFA 401 (613)
Q Consensus 370 sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A 401 (613)
+.+++.++++..... .+ ..|+.+++...
T Consensus 213 dlR~AlnlLekL~~y---~~-~~It~e~V~el 240 (605)
T PRK05896 213 SLRDGLSILDQLSTF---KN-SEIDIEDINKT 240 (605)
T ss_pred cHHHHHHHHHHHHhh---cC-CCCCHHHHHHH
Confidence 777887888765433 23 33888877764
No 99
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.66 E-value=1.8e-15 Score=163.61 Aligned_cols=190 Identities=21% Similarity=0.315 Sum_probs=131.7
Q ss_pred CCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCee---------------
Q 007190 167 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFF--------------- 231 (613)
Q Consensus 167 ~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi--------------- 231 (613)
.|++|+|++++++.|++.+..-+. .+...+.+.|+++||+||||+|||++|+++|+.+.++--
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~--~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA--DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc--cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 599999999999999998875332 233456668999999999999999999999997754310
Q ss_pred Eeecchhh--hh-hhhhhHHHHHHHHHHHHc----CCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCce
Q 007190 232 YRAGSEFE--EM-FVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGI 304 (613)
Q Consensus 232 ~is~s~~~--~~-~~g~~~~~vr~lf~~A~~----~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~V 304 (613)
.-+..++. .. -...+...+|++++.+.. ....|+||||+|.+ .....|.||+.|+. +..++
T Consensus 81 ~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m----------~~~aanaLLk~LEe--p~~~~ 148 (394)
T PRK07940 81 AGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRL----------TERAANALLKAVEE--PPPRT 148 (394)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhc----------CHHHHHHHHHHhhc--CCCCC
Confidence 00001110 00 011223457788877754 23469999999999 23456889999985 33344
Q ss_pred EEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHH
Q 007190 305 ILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANL 377 (613)
Q Consensus 305 iVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~l 377 (613)
++|.+|+.++.+.|.+++ |+ ..+.|++|+.++..++|.... .. +......++..+.|..+..+.-+
T Consensus 149 ~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~-~~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 149 VWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GV-DPETARRAARASQGHIGRARRLA 214 (394)
T ss_pred eEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCCCHHHHHHHh
Confidence 555555558999999998 88 799999999998887776322 22 34456678888888766554433
No 100
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=4.4e-15 Score=168.08 Aligned_cols=214 Identities=19% Similarity=0.238 Sum_probs=155.8
Q ss_pred cccCCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEee---
Q 007190 158 EVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRA--- 234 (613)
Q Consensus 158 ~~~~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is--- 234 (613)
.+...+.+.+|+||+|++.+++.|...+. .++.|.++||+||+|+|||++|+++|+.+++..-..+
T Consensus 13 ~la~KyRP~~f~dliGq~~~v~~L~~~~~-----------~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~ 81 (598)
T PRK09111 13 VLARKYRPQTFDDLIGQEAMVRTLTNAFE-----------TGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGP 81 (598)
T ss_pred hHHhhhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCC
Confidence 34455677899999999999999988775 3567889999999999999999999998865321111
Q ss_pred ----------cc--------hhhhhh--hhhhHHHHHHHHHHHHcC----CCeEEEEcCCCccccCCccCCcccHHHHHH
Q 007190 235 ----------GS--------EFEEMF--VGVGARRVRSLFQAAKKK----APCIIFIDEIDAVGSTRKQWEGHTKKTLHQ 290 (613)
Q Consensus 235 ----------~s--------~~~~~~--~g~~~~~vr~lf~~A~~~----~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~ 290 (613)
|. ++.+.- ...+...+|++.+.+... ...|++|||+|.+ .....|.
T Consensus 82 ~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~L----------s~~a~na 151 (598)
T PRK09111 82 TIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHML----------STAAFNA 151 (598)
T ss_pred ccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhC----------CHHHHHH
Confidence 11 111100 011234677777766432 3469999999998 2457889
Q ss_pred HHHHhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCC
Q 007190 291 LLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGF 369 (613)
Q Consensus 291 LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~ 369 (613)
||..|+. +...+++|.+|+.++.+.+.+++ |+ ..+.|+.|+.++...+++..+++.+.. ++..+..|++.+.|
T Consensus 152 LLKtLEe--Pp~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G- 225 (598)
T PRK09111 152 LLKTLEE--PPPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG- 225 (598)
T ss_pred HHHHHHh--CCCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 9999985 44456666677777788888887 88 679999999999999999988776554 34457778887765
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 007190 370 NGADLANLVNIAAIKAAVDGGEKLTATELEFAK 402 (613)
Q Consensus 370 sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A~ 402 (613)
+.+++.++++.+... +...||.+++...+
T Consensus 226 dlr~al~~Ldkli~~----g~g~It~e~V~~ll 254 (598)
T PRK09111 226 SVRDGLSLLDQAIAH----GAGEVTAEAVRDML 254 (598)
T ss_pred CHHHHHHHHHHHHhh----cCCCcCHHHHHHHh
Confidence 788888888776543 34579998887654
No 101
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=3.7e-15 Score=167.95 Aligned_cols=210 Identities=18% Similarity=0.231 Sum_probs=150.3
Q ss_pred CCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCC-------eeEe-
Q 007190 162 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP-------FFYR- 233 (613)
Q Consensus 162 ~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~p-------fi~i- 233 (613)
..++.+|+||+|++.+++.|+..+. .++.|+.+|||||||+|||++|+++|+.++++ +-.+
T Consensus 9 kyRP~~f~diiGqe~iv~~L~~~i~-----------~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~ 77 (563)
T PRK06647 9 KRRPRDFNSLEGQDFVVETLKHSIE-----------SNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECS 77 (563)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccch
Confidence 4456799999999999999888775 24577789999999999999999999988652 1111
Q ss_pred ecchhhhh-------hhh---hhHHHHHHHHHHHH----cCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccc
Q 007190 234 AGSEFEEM-------FVG---VGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE 299 (613)
Q Consensus 234 s~s~~~~~-------~~g---~~~~~vr~lf~~A~----~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~ 299 (613)
+|..+... +.| .+...++++.+.+. .....|++|||+|.+ ....+|.||..++.
T Consensus 78 ~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~L----------s~~a~naLLK~LEe-- 145 (563)
T PRK06647 78 SCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHML----------SNSAFNALLKTIEE-- 145 (563)
T ss_pred HHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhc----------CHHHHHHHHHhhcc--
Confidence 01000000 011 12234555554432 234569999999998 34578899999884
Q ss_pred cCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHHHH
Q 007190 300 QNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLV 378 (613)
Q Consensus 300 ~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~lv 378 (613)
+...+++|.+|+.++.|.+++++ |+. .+.|.+|+.++...+++..++..+.. ++..+..|++.+.| +.+++.+++
T Consensus 146 pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR~alslL 221 (563)
T PRK06647 146 PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVRDAYTLF 221 (563)
T ss_pred CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 55667777788888899999988 884 78999999999999999888665544 44557778887776 788888888
Q ss_pred HHHHHHHHHhCCCccCHHHHHHHH
Q 007190 379 NIAAIKAAVDGGEKLTATELEFAK 402 (613)
Q Consensus 379 ~~Aa~~A~~~~~~~It~~dl~~A~ 402 (613)
+.+...+ ...||.+++...+
T Consensus 222 dklis~~----~~~It~e~V~~ll 241 (563)
T PRK06647 222 DQVVSFS----DSDITLEQIRSKM 241 (563)
T ss_pred HHHHhhc----CCCCCHHHHHHHh
Confidence 7765432 3568888777643
No 102
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=3.5e-15 Score=160.65 Aligned_cols=211 Identities=18% Similarity=0.268 Sum_probs=146.9
Q ss_pred CCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchh--
Q 007190 161 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF-- 238 (613)
Q Consensus 161 ~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~-- 238 (613)
...++.+|+||+|++.+++.+...+. .++.|.++|||||||+|||++|+++++....+.....+..+
T Consensus 9 ~k~rP~~~~~iig~~~~~~~l~~~i~-----------~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~ 77 (367)
T PRK14970 9 RKYRPQTFDDVVGQSHITNTLLNAIE-----------NNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSF 77 (367)
T ss_pred HHHCCCcHHhcCCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCc
Confidence 34567899999999999988887775 24567799999999999999999999987653221111100
Q ss_pred ----hhhhhhhhHHHHHHHHHHHHc----CCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeec
Q 007190 239 ----EEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAAT 310 (613)
Q Consensus 239 ----~~~~~g~~~~~vr~lf~~A~~----~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaT 310 (613)
.+.....+...++.++..+.. ..+.||+|||+|.+. ...++.|+..++. +....++|.+|
T Consensus 78 ~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~----------~~~~~~ll~~le~--~~~~~~~Il~~ 145 (367)
T PRK14970 78 NIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS----------SAAFNAFLKTLEE--PPAHAIFILAT 145 (367)
T ss_pred ceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC----------HHHHHHHHHHHhC--CCCceEEEEEe
Confidence 000011123456677766543 235699999999882 3456788887775 33345666667
Q ss_pred CCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC
Q 007190 311 NLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDG 389 (613)
Q Consensus 311 N~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~ 389 (613)
+.+..+.+++.+ |+ ..+.+++|+.++...++...+.+.+.. ++..+..++..+.| +.+.+.+.++....++ +
T Consensus 146 ~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~~y~---~ 218 (367)
T PRK14970 146 TEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVVTFC---G 218 (367)
T ss_pred CCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHhc---C
Confidence 778888889887 77 578999999999999999888776653 45567888887654 6666767766555433 3
Q ss_pred CCccCHHHHHHHH
Q 007190 390 GEKLTATELEFAK 402 (613)
Q Consensus 390 ~~~It~~dl~~A~ 402 (613)
.. ||.++++..+
T Consensus 219 ~~-it~~~v~~~~ 230 (367)
T PRK14970 219 KN-ITRQAVTENL 230 (367)
T ss_pred CC-CCHHHHHHHh
Confidence 33 8888877654
No 103
>PRK06893 DNA replication initiation factor; Validated
Probab=99.66 E-value=5.3e-15 Score=149.25 Aligned_cols=209 Identities=14% Similarity=0.181 Sum_probs=133.6
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhh
Q 007190 164 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEE 240 (613)
Q Consensus 164 ~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~ 240 (613)
+..+|++.+|.+... .+..+... +.. ...| .++||||||||||+|++++|+++ +....+++......
T Consensus 11 ~~~~fd~f~~~~~~~-~~~~~~~~------~~~--~~~~-~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~ 80 (229)
T PRK06893 11 DDETLDNFYADNNLL-LLDSLRKN------FID--LQQP-FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY 80 (229)
T ss_pred CcccccccccCChHH-HHHHHHHH------hhc--cCCC-eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhh
Confidence 456899999776432 11111111 111 1122 58999999999999999999986 44555655543211
Q ss_pred hhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCC-ceEEEeecCCCCCCC--
Q 007190 241 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNE-GIILMAATNLPDILD-- 317 (613)
Q Consensus 241 ~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~-~ViVIaaTN~p~~Ld-- 317 (613)
. ..++++..+ ...+|+|||++.+.+.. .....+..+++.+ ..+. .+++++++..|..++
T Consensus 81 ~--------~~~~~~~~~--~~dlLilDDi~~~~~~~-----~~~~~l~~l~n~~---~~~~~~illits~~~p~~l~~~ 142 (229)
T PRK06893 81 F--------SPAVLENLE--QQDLVCLDDLQAVIGNE-----EWELAIFDLFNRI---KEQGKTLLLISADCSPHALSIK 142 (229)
T ss_pred h--------hHHHHhhcc--cCCEEEEeChhhhcCCh-----HHHHHHHHHHHHH---HHcCCcEEEEeCCCChHHcccc
Confidence 1 112233332 34699999999985432 1123344444433 2333 355666666776654
Q ss_pred -hhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Q 007190 318 -PALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTA 395 (613)
Q Consensus 318 -~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~ 395 (613)
+.+.+..++...+.++.|+.++|.+|++..+....+. ++..+..|++..+| +.+.+.++++... .+....++.||.
T Consensus 143 ~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~-~~~~~~~~~it~ 220 (229)
T PRK06893 143 LPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALDLLD-KASLQAQRKLTI 220 (229)
T ss_pred chhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHH-HHHHhcCCCCCH
Confidence 7888833345688999999999999999888765554 44457788888875 7888888888764 344444457999
Q ss_pred HHHHHHH
Q 007190 396 TELEFAK 402 (613)
Q Consensus 396 ~dl~~A~ 402 (613)
+.+++++
T Consensus 221 ~~v~~~L 227 (229)
T PRK06893 221 PFVKEIL 227 (229)
T ss_pred HHHHHHh
Confidence 8887764
No 104
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=4.7e-15 Score=165.02 Aligned_cols=204 Identities=20% Similarity=0.263 Sum_probs=150.8
Q ss_pred CCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCC-----------
Q 007190 161 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP----------- 229 (613)
Q Consensus 161 ~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~p----------- 229 (613)
...++.+|+||+|++.+++.|+..+. .++.|+.+|||||||+|||++|+++|+.+.++
T Consensus 6 ~KyRP~~fdeiiGqe~v~~~L~~~I~-----------~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C 74 (535)
T PRK08451 6 LKYRPKHFDELIGQESVSKTLSLALD-----------NNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTC 74 (535)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHH-----------cCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 34567899999999999999988875 35678788999999999999999999987421
Q ss_pred -------------eeEeecchhhhhhhhhhHHHHHHHHHHHHc----CCCeEEEEcCCCccccCCccCCcccHHHHHHHH
Q 007190 230 -------------FFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLL 292 (613)
Q Consensus 230 -------------fi~is~s~~~~~~~g~~~~~vr~lf~~A~~----~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL 292 (613)
++.+++++ ..+...++++...... ....|++|||+|.+ ....++.||
T Consensus 75 ~~C~~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~L----------t~~A~NALL 138 (535)
T PRK08451 75 IQCQSALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHML----------TKEAFNALL 138 (535)
T ss_pred HHHHHHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccC----------CHHHHHHHH
Confidence 22222211 0123456666554331 12359999999998 356788999
Q ss_pred HHhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCH
Q 007190 293 VEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNG 371 (613)
Q Consensus 293 ~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sg 371 (613)
..|+.. ...+.+|.+|+.+..|.+++++ |+ ..++|.+++.++....++..++..+.. ++..+..+++.+.| +.
T Consensus 139 K~LEEp--p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dl 212 (535)
T PRK08451 139 KTLEEP--PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-SL 212 (535)
T ss_pred HHHhhc--CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cH
Confidence 999964 4456666677778999999988 86 688999999999999999888776554 44557888887776 88
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 007190 372 ADLANLVNIAAIKAAVDGGEKLTATELEFA 401 (613)
Q Consensus 372 adL~~lv~~Aa~~A~~~~~~~It~~dl~~A 401 (613)
+++.++++.+...+ ...||.+++...
T Consensus 213 R~alnlLdqai~~~----~~~It~~~V~~~ 238 (535)
T PRK08451 213 RDTLTLLDQAIIYC----KNAITESKVADM 238 (535)
T ss_pred HHHHHHHHHHHHhc----CCCCCHHHHHHH
Confidence 88888888776543 346788777644
No 105
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.65 E-value=2.5e-15 Score=177.24 Aligned_cols=201 Identities=21% Similarity=0.268 Sum_probs=141.6
Q ss_pred CCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc----------CCCeeE
Q 007190 163 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFY 232 (613)
Q Consensus 163 ~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~----------~~pfi~ 232 (613)
-...++++|+|.++. ++.++..|... ...+++|+||||||||++|+++|..+ +.+++.
T Consensus 172 ~r~~~l~~vigr~~e---i~~~i~iL~r~---------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~ 239 (857)
T PRK10865 172 AEQGKLDPVIGRDEE---IRRTIQVLQRR---------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 239 (857)
T ss_pred HhcCCCCcCCCCHHH---HHHHHHHHhcC---------CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEE
Confidence 345689999999985 55555443322 22479999999999999999999987 678888
Q ss_pred eecchhh--hhhhhhhHHHHHHHHHHHH-cCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEee
Q 007190 233 RAGSEFE--EMFVGVGARRVRSLFQAAK-KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAA 309 (613)
Q Consensus 233 is~s~~~--~~~~g~~~~~vr~lf~~A~-~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaa 309 (613)
++.+.+. .+|.|..+.+++.+|..+. ...|+||||||+|.+.+.++...+ ....+-|... -.+..+.+|||
T Consensus 240 l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~--~d~~~~lkp~----l~~g~l~~Iga 313 (857)
T PRK10865 240 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGA--MDAGNMLKPA----LARGELHCVGA 313 (857)
T ss_pred EehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccc--hhHHHHhcch----hhcCCCeEEEc
Confidence 8888765 4588999999999999864 457899999999999766433221 1122223222 24678999999
Q ss_pred cCCCC-----CCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-----ChhcHHHHHhcCCC-----CCHHHH
Q 007190 310 TNLPD-----ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-----DDVDVKAIARGTPG-----FNGADL 374 (613)
Q Consensus 310 TN~p~-----~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-----~d~dl~~la~~t~G-----~sgadL 374 (613)
|+.++ .+|+++.| ||+ .|.++.|+.+++..||+.+.+..... .+..+...+..+.. +-+...
T Consensus 314 Tt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdkA 390 (857)
T PRK10865 314 TTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKA 390 (857)
T ss_pred CCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCChHH
Confidence 99876 48999999 997 58899999999999998876543222 23333333333332 334455
Q ss_pred HHHHHHHHHH
Q 007190 375 ANLVNIAAIK 384 (613)
Q Consensus 375 ~~lv~~Aa~~ 384 (613)
..+++.++..
T Consensus 391 i~LiD~aaa~ 400 (857)
T PRK10865 391 IDLIDEAASS 400 (857)
T ss_pred HHHHHHHhcc
Confidence 5666666543
No 106
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=6.2e-15 Score=162.55 Aligned_cols=204 Identities=19% Similarity=0.236 Sum_probs=145.5
Q ss_pred CCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCC------------
Q 007190 162 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------ 229 (613)
Q Consensus 162 ~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~p------------ 229 (613)
...+.+|+||+|++.+++.|...+. .++.|+.+|||||||+|||++|+++|+.+.++
T Consensus 10 kyRP~~~~diiGq~~~v~~L~~~i~-----------~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c 78 (451)
T PRK06305 10 KYRPQTFSEILGQDAVVAVLKNALR-----------FNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQC 78 (451)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCccc
Confidence 4456899999999999998888775 24677889999999999999999999987542
Q ss_pred -------------eeEeecchhhhhhhhhhHHHHHHHHHHH----HcCCCeEEEEcCCCccccCCccCCcccHHHHHHHH
Q 007190 230 -------------FFYRAGSEFEEMFVGVGARRVRSLFQAA----KKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLL 292 (613)
Q Consensus 230 -------------fi~is~s~~~~~~~g~~~~~vr~lf~~A----~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL 292 (613)
++.+++... .+...++.+-+.. ......|++|||+|.+. ....+.|+
T Consensus 79 ~~C~~i~~~~~~d~~~i~g~~~------~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt----------~~~~n~LL 142 (451)
T PRK06305 79 ASCKEISSGTSLDVLEIDGASH------RGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT----------KEAFNSLL 142 (451)
T ss_pred HHHHHHhcCCCCceEEeecccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC----------HHHHHHHH
Confidence 222222110 1122333332222 12346799999999982 34678899
Q ss_pred HHhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCH
Q 007190 293 VEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNG 371 (613)
Q Consensus 293 ~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sg 371 (613)
..|+. +...+++|.+||.+..|.+.+++ |+ ..+.|+.++.++....++..+++.+.. ++..+..|+..+.| +.
T Consensus 143 k~lEe--p~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g-dl 216 (451)
T PRK06305 143 KTLEE--PPQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG-SL 216 (451)
T ss_pred HHhhc--CCCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 98885 34567777788888899999988 88 578999999999999999888766543 44557788887765 66
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 007190 372 ADLANLVNIAAIKAAVDGGEKLTATELEFAK 402 (613)
Q Consensus 372 adL~~lv~~Aa~~A~~~~~~~It~~dl~~A~ 402 (613)
+++.+.++..... .+ ..|+.+++..++
T Consensus 217 r~a~~~Lekl~~~---~~-~~It~~~V~~l~ 243 (451)
T PRK06305 217 RDAESLYDYVVGL---FP-KSLDPDSVAKAL 243 (451)
T ss_pred HHHHHHHHHHHHh---cc-CCcCHHHHHHHH
Confidence 6666666654332 23 459998887654
No 107
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.64 E-value=1.4e-14 Score=159.38 Aligned_cols=195 Identities=18% Similarity=0.258 Sum_probs=132.6
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCc
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRK 278 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~ 278 (613)
.++++||||||+|||+|++++++++ +.+++++++.+|...+.......-...|.... ..+++|+|||++.+.++.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~- 218 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKG- 218 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCCh-
Confidence 3579999999999999999999875 68899999888766544332211112344332 345799999999985432
Q ss_pred cCCcccHHHHHHHHHHhhccccCCceEEEeecCCCC---CCChhhcCCCccc--eEEEccCCCHhhHHHHHHHHhccCCC
Q 007190 279 QWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD---ILDPALTRPGRFD--RHIVVPNPDVRGRQEILELYLQDKPL 353 (613)
Q Consensus 279 ~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~---~Ld~aLlRpgRFd--~~I~v~~Pd~~~R~~IL~~~l~~~~l 353 (613)
.+...++..++.+......+|+++++.|. .+++.|.+ ||. ..+.+++|+.++|..||+..+...++
T Consensus 219 -------~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~ 289 (445)
T PRK12422 219 -------ATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSI 289 (445)
T ss_pred -------hhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 12223333333222233456665555554 46788888 996 68899999999999999999887655
Q ss_pred C-ChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHH--hCCCccCHHHHHHHHHHHhcC
Q 007190 354 A-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAV--DGGEKLTATELEFAKDRILMG 408 (613)
Q Consensus 354 ~-~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~--~~~~~It~~dl~~A~~~v~~g 408 (613)
. ++..+..|+....+ +.++|.+.++..+...+. -....||.+++++++..++..
T Consensus 290 ~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~~~~~~i~~~~~~~~l~~~~~~ 346 (445)
T PRK12422 290 RIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKKLSHQLLYVDDIKALLHDVLEA 346 (445)
T ss_pred CCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhhc
Confidence 4 34446668887764 778888888877532222 134679999999999876543
No 108
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.64 E-value=1.2e-14 Score=165.11 Aligned_cols=218 Identities=20% Similarity=0.229 Sum_probs=145.1
Q ss_pred cccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc-------C---CCeeEeecchh
Q 007190 169 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-------G---VPFFYRAGSEF 238 (613)
Q Consensus 169 ~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~-------~---~pfi~is~s~~ 238 (613)
+.|.|.++..++|..++..... +..+...++|+||||||||++++.+.+++ + +.+++++|..+
T Consensus 755 D~LPhREeEIeeLasfL~paIk-------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~L 827 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK-------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNV 827 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh-------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCcc
Confidence 4577888877777766653211 12223345799999999999999998765 2 45789999654
Q ss_pred hhhh---h-------------h-hhHHHHHHHHHHHH--cCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccc
Q 007190 239 EEMF---V-------------G-VGARRVRSLFQAAK--KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE 299 (613)
Q Consensus 239 ~~~~---~-------------g-~~~~~vr~lf~~A~--~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~ 299 (613)
...+ . | .....+..+|.... ....+||+|||||.|..+ .+..|..|+.... .
T Consensus 828 stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK-------~QDVLYnLFR~~~--~ 898 (1164)
T PTZ00112 828 VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK-------TQKVLFTLFDWPT--K 898 (1164)
T ss_pred CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc-------HHHHHHHHHHHhh--c
Confidence 3221 0 1 12245566676552 234579999999999653 2456666666543 2
Q ss_pred cCCceEEEeecCC---CCCCChhhcCCCccce-EEEccCCCHhhHHHHHHHHhccC-CCCChhcHHHHHhcCCCC--CHH
Q 007190 300 QNEGIILMAATNL---PDILDPALTRPGRFDR-HIVVPNPDVRGRQEILELYLQDK-PLADDVDVKAIARGTPGF--NGA 372 (613)
Q Consensus 300 ~~~~ViVIaaTN~---p~~Ld~aLlRpgRFd~-~I~v~~Pd~~~R~~IL~~~l~~~-~l~~d~dl~~la~~t~G~--sga 372 (613)
....++|||++|. ++.|++.+++ ||.. .+.|++++.+++.+||+..+... ..-++..+..+|+..... ..+
T Consensus 899 s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDAR 976 (1164)
T PTZ00112 899 INSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIR 976 (1164)
T ss_pred cCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHH
Confidence 3567999999985 5677888877 6654 48899999999999999998753 223444567777744422 223
Q ss_pred HHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhc
Q 007190 373 DLANLVNIAAIKAAVDGGEKLTATELEFAKDRILM 407 (613)
Q Consensus 373 dL~~lv~~Aa~~A~~~~~~~It~~dl~~A~~~v~~ 407 (613)
..-.+|+.|+.. .+...|+.+|+..|.+++..
T Consensus 977 KALDILRrAgEi---kegskVT~eHVrkAleeiE~ 1008 (1164)
T PTZ00112 977 KALQICRKAFEN---KRGQKIVPRDITEATNQLFD 1008 (1164)
T ss_pred HHHHHHHHHHhh---cCCCccCHHHHHHHHHHHHh
Confidence 344555555543 34568999999999987643
No 109
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=4.3e-15 Score=161.67 Aligned_cols=215 Identities=15% Similarity=0.215 Sum_probs=148.6
Q ss_pred CCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCee---------
Q 007190 161 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFF--------- 231 (613)
Q Consensus 161 ~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi--------- 231 (613)
...++.+|++|+|++.+++.|+..+. .++.|..+||+||||+|||++|+++|+.+.++-.
T Consensus 8 ~k~RP~~~~eiiGq~~~~~~L~~~~~-----------~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~ 76 (397)
T PRK14955 8 RKYRPKKFADITAQEHITRTIQNSLR-----------MGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQE 76 (397)
T ss_pred HhcCCCcHhhccChHHHHHHHHHHHH-----------hCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccccc
Confidence 34566799999999999998888775 3567888999999999999999999999876310
Q ss_pred -Eeecchh------hh-------hhhh---hhHHHHHHHHHHHHc----CCCeEEEEcCCCccccCCccCCcccHHHHHH
Q 007190 232 -YRAGSEF------EE-------MFVG---VGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQ 290 (613)
Q Consensus 232 -~is~s~~------~~-------~~~g---~~~~~vr~lf~~A~~----~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~ 290 (613)
.-.|... .. .+.+ .+...++++.+.+.. ....|++|||+|.+. ....+.
T Consensus 77 ~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~----------~~~~~~ 146 (397)
T PRK14955 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS----------IAAFNA 146 (397)
T ss_pred CCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC----------HHHHHH
Confidence 0011110 00 0111 123455555555421 223599999999982 346678
Q ss_pred HHHHhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCC
Q 007190 291 LLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGF 369 (613)
Q Consensus 291 LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~ 369 (613)
|+..++. +....++|.+|+.+..+.+.+.+ |+ ..+.+++++.++....++..++..... ++..+..++..+.|
T Consensus 147 LLk~LEe--p~~~t~~Il~t~~~~kl~~tl~s--R~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g- 220 (397)
T PRK14955 147 FLKTLEE--PPPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQG- 220 (397)
T ss_pred HHHHHhc--CCCCeEEEEEeCChHHhHHHHHH--HH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 8888874 33455666666777888888887 77 478899999999988888888765543 45557788887765
Q ss_pred CHHHHHHHHHHHHHHHHH-hCCCccCHHHHHHHH
Q 007190 370 NGADLANLVNIAAIKAAV-DGGEKLTATELEFAK 402 (613)
Q Consensus 370 sgadL~~lv~~Aa~~A~~-~~~~~It~~dl~~A~ 402 (613)
+.+.+.+.++.+...+.. .....||.++++..+
T Consensus 221 ~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 221 SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 777777777766655432 234689998887665
No 110
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.63 E-value=1.5e-14 Score=159.50 Aligned_cols=190 Identities=16% Similarity=0.251 Sum_probs=135.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc-----CCCeeEeecchhhhhhhhhhHH---HHHHHHHHHHcCCCeEEEEcCCCccc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAGSEFEEMFVGVGAR---RVRSLFQAAKKKAPCIIFIDEIDAVG 274 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~-----~~pfi~is~s~~~~~~~g~~~~---~vr~lf~~A~~~~P~ILfIDEiD~l~ 274 (613)
.+++||||+|+|||+|++++++++ +..++++++.+|...+...... .+..+.... ..+.+|+|||++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEecccccc
Confidence 469999999999999999999854 4678999999987776543222 222222222 245699999999985
Q ss_pred cCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCC---CCChhhcCCCccce--EEEccCCCHhhHHHHHHHHhc
Q 007190 275 STRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD---ILDPALTRPGRFDR--HIVVPNPDVRGRQEILELYLQ 349 (613)
Q Consensus 275 ~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~---~Ld~aLlRpgRFd~--~I~v~~Pd~~~R~~IL~~~l~ 349 (613)
++ ..+...|+..++....+...+|+++...|. .+++.|.+ ||.. .+.+.+|+.++|.+|++..++
T Consensus 220 ~k--------~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~ 289 (450)
T PRK14087 220 YK--------EKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIK 289 (450)
T ss_pred CC--------HHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHH
Confidence 43 223334444444333344445555545554 35788888 8864 778899999999999999997
Q ss_pred cCCC---CChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC-CCccCHHHHHHHHHHH
Q 007190 350 DKPL---ADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDG-GEKLTATELEFAKDRI 405 (613)
Q Consensus 350 ~~~l---~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~-~~~It~~dl~~A~~~v 405 (613)
..++ -++..+..|+..+.| +++.+.++++++...+.... ...||.+.+.+++..+
T Consensus 290 ~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 290 NQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred hcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhc
Confidence 6543 345557888988886 89999999998875555542 3689999999998775
No 111
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.63 E-value=1.8e-14 Score=145.96 Aligned_cols=205 Identities=16% Similarity=0.170 Sum_probs=134.0
Q ss_pred CCCCCcccC-C-CHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchh
Q 007190 164 NVKTFKDVK-G-CDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEF 238 (613)
Q Consensus 164 ~~~~f~dV~-G-~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~ 238 (613)
+..+|++.+ | +..+...++.+.. .+ .+..++||||||||||+|++++++++ +..+.+++..+.
T Consensus 17 ~~~~fd~f~~~~n~~a~~~l~~~~~---~~---------~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~ 84 (235)
T PRK08084 17 DDETFASFYPGDNDSLLAALQNALR---QE---------HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKR 84 (235)
T ss_pred CcCCccccccCccHHHHHHHHHHHh---CC---------CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHH
Confidence 345788877 4 4555555555432 11 12479999999999999999999875 345666666553
Q ss_pred hhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCc-eEEEeecCCCCC--
Q 007190 239 EEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEG-IILMAATNLPDI-- 315 (613)
Q Consensus 239 ~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~-ViVIaaTN~p~~-- 315 (613)
... ..++++.... ..+|+|||+|.+.++. ..+..+..++..+ ..+.+ .+++++++.|..
T Consensus 85 ~~~--------~~~~~~~~~~--~dlliiDdi~~~~~~~-----~~~~~lf~l~n~~---~e~g~~~li~ts~~~p~~l~ 146 (235)
T PRK08084 85 AWF--------VPEVLEGMEQ--LSLVCIDNIECIAGDE-----LWEMAIFDLYNRI---LESGRTRLLITGDRPPRQLN 146 (235)
T ss_pred hhh--------hHHHHHHhhh--CCEEEEeChhhhcCCH-----HHHHHHHHHHHHH---HHcCCCeEEEeCCCChHHcC
Confidence 221 1122222222 2589999999985431 1233333333332 22333 355556666655
Q ss_pred -CChhhcCCCccc--eEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCC
Q 007190 316 -LDPALTRPGRFD--RHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGE 391 (613)
Q Consensus 316 -Ld~aLlRpgRFd--~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~ 391 (613)
+.|.|++ |+. ..+.+.+|+.+++.++++..+...++. ++.-++.|++..+| +.+.+.++++... .++...++
T Consensus 147 ~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~-~~~l~~~~ 222 (235)
T PRK08084 147 LGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLD-RASITAQR 222 (235)
T ss_pred cccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHH-HHHHhcCC
Confidence 5789988 886 588999999999999999877665444 44457888888876 8899999998753 34444556
Q ss_pred ccCHHHHHHHH
Q 007190 392 KLTATELEFAK 402 (613)
Q Consensus 392 ~It~~dl~~A~ 402 (613)
.||.+.+++++
T Consensus 223 ~it~~~~k~~l 233 (235)
T PRK08084 223 KLTIPFVKEIL 233 (235)
T ss_pred CCCHHHHHHHH
Confidence 79998887765
No 112
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.63 E-value=5.7e-15 Score=174.63 Aligned_cols=205 Identities=20% Similarity=0.281 Sum_probs=147.3
Q ss_pred CCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc----------CCCeeE
Q 007190 163 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFY 232 (613)
Q Consensus 163 ~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~----------~~pfi~ 232 (613)
-...+++.++|.++. ++.++..|.. +...+++|+||||||||++++++|... +.+++.
T Consensus 167 ~~~~~~~~~igr~~e---i~~~~~~l~r---------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~ 234 (852)
T TIGR03346 167 AREGKLDPVIGRDEE---IRRTIQVLSR---------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLA 234 (852)
T ss_pred hhCCCCCcCCCcHHH---HHHHHHHHhc---------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEE
Confidence 345579999999986 4444443322 223478999999999999999999975 677888
Q ss_pred eecchhh--hhhhhhhHHHHHHHHHHHHc-CCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEee
Q 007190 233 RAGSEFE--EMFVGVGARRVRSLFQAAKK-KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAA 309 (613)
Q Consensus 233 is~s~~~--~~~~g~~~~~vr~lf~~A~~-~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaa 309 (613)
++.+.+. ..|.|..+++++.+|..+.. ..|+||||||+|.+.+.+.... .....+.|... -.+..+.+|++
T Consensus 235 l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~--~~d~~~~Lk~~----l~~g~i~~Iga 308 (852)
T TIGR03346 235 LDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEG--AMDAGNMLKPA----LARGELHCIGA 308 (852)
T ss_pred eeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcc--hhHHHHHhchh----hhcCceEEEEe
Confidence 8877765 46888899999999999865 4589999999999976433211 12223333222 24667999999
Q ss_pred cCCCC-----CCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-----ChhcHHHHHhcCCCC-----CHHHH
Q 007190 310 TNLPD-----ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-----DDVDVKAIARGTPGF-----NGADL 374 (613)
Q Consensus 310 TN~p~-----~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-----~d~dl~~la~~t~G~-----sgadL 374 (613)
|+.++ .+|+++.| ||. .|.++.|+.+++..||+.+....... .+..+...+..+.+| -|...
T Consensus 309 Tt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkA 385 (852)
T TIGR03346 309 TTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKA 385 (852)
T ss_pred CcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHH
Confidence 99774 47999999 996 58999999999999999876654332 334455666655544 34556
Q ss_pred HHHHHHHHHHHHHh
Q 007190 375 ANLVNIAAIKAAVD 388 (613)
Q Consensus 375 ~~lv~~Aa~~A~~~ 388 (613)
-.++++|+......
T Consensus 386 idlld~a~a~~~~~ 399 (852)
T TIGR03346 386 IDLIDEAAARIRME 399 (852)
T ss_pred HHHHHHHHHHHHhh
Confidence 67888887665443
No 113
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.62 E-value=5.5e-15 Score=152.70 Aligned_cols=214 Identities=27% Similarity=0.345 Sum_probs=140.9
Q ss_pred cccCCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCC---eeEee
Q 007190 158 EVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP---FFYRA 234 (613)
Q Consensus 158 ~~~~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~p---fi~is 234 (613)
++.+.-++.+++|.+|+++...+ .-++..+-. ..+.| .++||||||||||+||+.|+.....+ |++++
T Consensus 127 PLaermRPktL~dyvGQ~hlv~q-~gllrs~ie-------q~~ip-SmIlWGppG~GKTtlArlia~tsk~~SyrfvelS 197 (554)
T KOG2028|consen 127 PLAERMRPKTLDDYVGQSHLVGQ-DGLLRSLIE-------QNRIP-SMILWGPPGTGKTTLARLIASTSKKHSYRFVELS 197 (554)
T ss_pred ChhhhcCcchHHHhcchhhhcCc-chHHHHHHH-------cCCCC-ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEe
Confidence 34445567899999999987554 222222111 13455 79999999999999999999988766 77776
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHHc-----CCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEee
Q 007190 235 GSEFEEMFVGVGARRVRSLFQAAKK-----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAA 309 (613)
Q Consensus 235 ~s~~~~~~~g~~~~~vr~lf~~A~~-----~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaa 309 (613)
+.. ...+.+|++|+.++. ....|||||||+.+... ....||-.. .+..|++|++
T Consensus 198 At~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNks----------QQD~fLP~V----E~G~I~lIGA 256 (554)
T KOG2028|consen 198 ATN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKS----------QQDTFLPHV----ENGDITLIGA 256 (554)
T ss_pred ccc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhh----------hhhccccee----ccCceEEEec
Confidence 643 234568899998864 33579999999998432 112333332 3567888887
Q ss_pred cC--CCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhc---c-----CCCC------ChhcHHHHHhcCCCCCHHH
Q 007190 310 TN--LPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQ---D-----KPLA------DDVDVKAIARGTPGFNGAD 373 (613)
Q Consensus 310 TN--~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~---~-----~~l~------~d~dl~~la~~t~G~sgad 373 (613)
|. ..-.|..+|++ |+ +++.+...+.+.-..||.+-+. + .++. ++.-++.++..+.|-..+.
T Consensus 257 TTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~a 333 (554)
T KOG2028|consen 257 TTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAA 333 (554)
T ss_pred ccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHH
Confidence 73 33478899998 88 6777888888888888887443 1 1121 2233677888888855544
Q ss_pred HHHHHHHHHHHHHHhC---CCccCHHHHHHHHHH
Q 007190 374 LANLVNIAAIKAAVDG---GEKLTATELEFAKDR 404 (613)
Q Consensus 374 L~~lv~~Aa~~A~~~~---~~~It~~dl~~A~~~ 404 (613)
|..+--.+.+...+.+ +..++.+|+.+.+.+
T Consensus 334 LN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~ 367 (554)
T KOG2028|consen 334 LNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQR 367 (554)
T ss_pred HHHHHHHHHHHHhhcCCcccceecHHHHHHHHhh
Confidence 4333222223333333 346889999888765
No 114
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=1.9e-14 Score=163.88 Aligned_cols=210 Identities=16% Similarity=0.214 Sum_probs=147.7
Q ss_pred ccCCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeE----ee
Q 007190 159 VMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFY----RA 234 (613)
Q Consensus 159 ~~~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~----is 234 (613)
+..+.++.+|++++|++++++.|+..+.. .+.+.++||+||||||||++|+++|+.+++.... -.
T Consensus 6 l~~kyRP~~f~~liGq~~i~~~L~~~l~~-----------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~ 74 (620)
T PRK14948 6 LHHKYRPQRFDELVGQEAIATTLKNALIS-----------NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEP 74 (620)
T ss_pred HHHHhCCCcHhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCC
Confidence 34455678999999999999999888762 3456689999999999999999999998762110 01
Q ss_pred cc--------------hhh--hhhhhhhHHHHHHHHHHHHc----CCCeEEEEcCCCccccCCccCCcccHHHHHHHHHH
Q 007190 235 GS--------------EFE--EMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVE 294 (613)
Q Consensus 235 ~s--------------~~~--~~~~g~~~~~vr~lf~~A~~----~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ 294 (613)
|. ++. +.....+...++++...+.. ....|++|||+|.| .....+.||..
T Consensus 75 Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~L----------t~~a~naLLK~ 144 (620)
T PRK14948 75 CGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHML----------STAAFNALLKT 144 (620)
T ss_pred CcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECcccc----------CHHHHHHHHHH
Confidence 11 110 01112344577888776653 23469999999999 34578899999
Q ss_pred hhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHH
Q 007190 295 MDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGAD 373 (613)
Q Consensus 295 ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgad 373 (613)
|+. ....+++|.+|+.++.+.+.+++ |+ ..+.|+.++.++....++..+.+.+.. ++..+..+++.+.| +.++
T Consensus 145 LEe--Pp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G-~lr~ 218 (620)
T PRK14948 145 LEE--PPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG-GLRD 218 (620)
T ss_pred Hhc--CCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHH
Confidence 994 44567778888888888889987 77 678898898888888887777665433 33457788887776 5577
Q ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHH
Q 007190 374 LANLVNIAAIKAAVDGGEKLTATELEF 400 (613)
Q Consensus 374 L~~lv~~Aa~~A~~~~~~~It~~dl~~ 400 (613)
+.++++..... ...||.+++..
T Consensus 219 A~~lLeklsL~-----~~~It~e~V~~ 240 (620)
T PRK14948 219 AESLLDQLSLL-----PGPITPEAVWD 240 (620)
T ss_pred HHHHHHHHHhc-----cCCCCHHHHHH
Confidence 77777654432 13477666553
No 115
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.62 E-value=8.2e-15 Score=172.79 Aligned_cols=202 Identities=20% Similarity=0.277 Sum_probs=148.1
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc----------CCCeeEee
Q 007190 165 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFYRA 234 (613)
Q Consensus 165 ~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~----------~~pfi~is 234 (613)
.-.|++|+|.++..+.+.+++. .+.+.+++|+||||||||++|+++|.+. +.+++.++
T Consensus 175 ~~~~~~~igr~~ei~~~~~~L~------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 175 DGNLDPVIGREKEIERVIQILG------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred cCCCCCCCCcHHHHHHHHHHHc------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 3469999999998777776653 2345589999999999999999999976 36789999
Q ss_pred cchhh--hhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCC
Q 007190 235 GSEFE--EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNL 312 (613)
Q Consensus 235 ~s~~~--~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~ 312 (613)
.+.+. ..|.|+.+.+++.+|+.++...++||||||||.+.+..+.... ....+-|...+ .+..+.+|++|+.
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~--~~~a~lLkp~l----~rg~l~~IgaTt~ 316 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGA--IDAANILKPAL----ARGELQCIGATTL 316 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCc--ccHHHHhHHHH----hCCCcEEEEeCCH
Confidence 88776 4688999999999999998888999999999999766432221 11222222222 3567899999997
Q ss_pred CC-----CCChhhcCCCccceEEEccCCCHhhHHHHHHHHhcc----CCC-CChhcHHHHHhcCCCCC-----HHHHHHH
Q 007190 313 PD-----ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQD----KPL-ADDVDVKAIARGTPGFN-----GADLANL 377 (613)
Q Consensus 313 p~-----~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~----~~l-~~d~dl~~la~~t~G~s-----gadL~~l 377 (613)
.+ ..|+++.+ ||. .|.++.|+.++...|++..... ..+ .++..+..++..+.+|. |...-.+
T Consensus 317 ~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidl 393 (821)
T CHL00095 317 DEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDL 393 (821)
T ss_pred HHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHH
Confidence 64 47899999 995 5799999999999988764321 222 23444666666666543 4555677
Q ss_pred HHHHHHHHHH
Q 007190 378 VNIAAIKAAV 387 (613)
Q Consensus 378 v~~Aa~~A~~ 387 (613)
+++|+.....
T Consensus 394 ld~a~a~~~~ 403 (821)
T CHL00095 394 LDEAGSRVRL 403 (821)
T ss_pred HHHHHHHHHh
Confidence 7777765544
No 116
>PRK08727 hypothetical protein; Validated
Probab=99.61 E-value=5.6e-14 Score=142.19 Aligned_cols=179 Identities=22% Similarity=0.273 Sum_probs=120.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCcc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQ 279 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~ 279 (613)
..++|+||+|||||+|+++++.++ +...++++..++... +.+.++... ...+|+|||+|.+.....
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~--------~~~~~~~l~--~~dlLiIDDi~~l~~~~~- 110 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGR--------LRDALEALE--GRSLVALDGLESIAGQRE- 110 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhh--------HHHHHHHHh--cCCEEEEeCcccccCChH-
Confidence 469999999999999999997764 566777776554332 233444333 346999999998854321
Q ss_pred CCcccHHHHHHHHHHhhccccCCceEEEeecCCCCCC---ChhhcCCCcc--ceEEEccCCCHhhHHHHHHHHhccCCCC
Q 007190 280 WEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL---DPALTRPGRF--DRHIVVPNPDVRGRQEILELYLQDKPLA 354 (613)
Q Consensus 280 ~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~L---d~aLlRpgRF--d~~I~v~~Pd~~~R~~IL~~~l~~~~l~ 354 (613)
....+..++... ..+..-+|+.+.+.|..+ +++|++ || ...+.+++|+.+++.+|++.++....+.
T Consensus 111 ----~~~~lf~l~n~~---~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~ 181 (233)
T PRK08727 111 ----DEVALFDFHNRA---RAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLA 181 (233)
T ss_pred ----HHHHHHHHHHHH---HHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 223333344333 223333445455566654 789988 87 4588999999999999999977655443
Q ss_pred -ChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 007190 355 -DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKD 403 (613)
Q Consensus 355 -~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A~~ 403 (613)
++..+..|++.+.| +.+.+.++++.....+... ++.||.+.+++.+.
T Consensus 182 l~~e~~~~La~~~~r-d~r~~l~~L~~l~~~~~~~-~~~it~~~~~~~l~ 229 (233)
T PRK08727 182 LDEAAIDWLLTHGER-ELAGLVALLDRLDRESLAA-KRRVTVPFLRRVLE 229 (233)
T ss_pred CCHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHh-CCCCCHHHHHHHHh
Confidence 44457888888774 6666767777655434443 45799988887764
No 117
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=8.5e-15 Score=162.86 Aligned_cols=164 Identities=28% Similarity=0.381 Sum_probs=128.6
Q ss_pred cccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhh---------
Q 007190 169 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE--------- 239 (613)
Q Consensus 169 ~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~--------- 239 (613)
+|-.|++++|+++.|.+.-.+.... .+-| -++|+||||+|||+|++.||+.+|.+|+.++.....
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~-----~kGp-ILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKK-----LKGP-ILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhcc-----CCCc-EEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence 3568999999999886654322211 1223 688999999999999999999999999999875542
Q ss_pred hhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhc-----c--------ccCCceEE
Q 007190 240 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDG-----F--------EQNEGIIL 306 (613)
Q Consensus 240 ~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg-----~--------~~~~~ViV 306 (613)
..|+|....++-+-...|....| +++|||||.++.+- .+.... .||..+|- | ..-+.|++
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~---rGDPaS---ALLEVLDPEQN~~F~DhYLev~yDLS~VmF 469 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSF---RGDPAS---ALLEVLDPEQNNTFSDHYLEVPYDLSKVMF 469 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCC---CCChHH---HHHhhcCHhhcCchhhccccCccchhheEE
Confidence 35899999999888999998888 88999999997652 233333 34444442 1 11256999
Q ss_pred EeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHh
Q 007190 307 MAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYL 348 (613)
Q Consensus 307 IaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l 348 (613)
|+|.|..+.+|.+|+. |+ ..|.+.-++.++..+|-+.|+
T Consensus 470 iaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 470 IATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhc
Confidence 9999999999999998 88 699999999999999999997
No 118
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=9.3e-15 Score=161.61 Aligned_cols=205 Identities=26% Similarity=0.403 Sum_probs=146.9
Q ss_pred cccCCCHHHHHHHHHHHHH--hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchh--------
Q 007190 169 KDVKGCDDAKQELVEVVEY--LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF-------- 238 (613)
Q Consensus 169 ~dV~G~~e~k~~L~eiv~~--l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~-------- 238 (613)
+|-.|++++|+++.|++.- |+. ....+-++|+||||+|||+++|+||+.+|..|+.+|...+
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrg--------s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkG 482 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRG--------SVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKG 482 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcc--------cCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcc
Confidence 4678999999999997654 333 2234578999999999999999999999999999886544
Q ss_pred -hhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHH------Hhhcc----ccCCceEEE
Q 007190 239 -EEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLV------EMDGF----EQNEGIILM 307 (613)
Q Consensus 239 -~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~------~ldg~----~~~~~ViVI 307 (613)
...|+|....++-+.++...-..| +++|||||.+|+. ..+.....+-++|. .+|.| -.-+.|++|
T Consensus 483 HRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g---~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFi 558 (906)
T KOG2004|consen 483 HRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSG---HQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFI 558 (906)
T ss_pred cceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCC---CCCChHHHHHHhcChhhccchhhhccccccchhheEEE
Confidence 234899999999999998888888 8899999999842 22333444433331 11111 123569999
Q ss_pred eecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhcc-----CCCC-------ChhcHHHHHhcCCCCCH----
Q 007190 308 AATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQD-----KPLA-------DDVDVKAIARGTPGFNG---- 371 (613)
Q Consensus 308 aaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~-----~~l~-------~d~dl~~la~~t~G~sg---- 371 (613)
||.|..+.|+++|+. |+ ..|.++-+..++..+|.+.|+-. .++. ++.-...|-+.|.. +|
T Consensus 559 cTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrE-aGVRnL 634 (906)
T KOG2004|consen 559 CTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCRE-AGVRNL 634 (906)
T ss_pred EeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHH-HhHHHH
Confidence 999999999999998 88 68999999999999999999832 2222 11112223333321 22
Q ss_pred -HHHHHHHHHHHHHHHHhC
Q 007190 372 -ADLANLVNIAAIKAAVDG 389 (613)
Q Consensus 372 -adL~~lv~~Aa~~A~~~~ 389 (613)
..|+.+|+.++..-++..
T Consensus 635 qk~iekI~Rk~Al~vv~~~ 653 (906)
T KOG2004|consen 635 QKQIEKICRKVALKVVEGE 653 (906)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 457777887777666554
No 119
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=3e-14 Score=161.64 Aligned_cols=214 Identities=14% Similarity=0.211 Sum_probs=148.4
Q ss_pred CCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeE---------
Q 007190 162 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFY--------- 232 (613)
Q Consensus 162 ~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~--------- 232 (613)
..++.+|++|+|++.+++.|+..+. .++.|.++||+||||||||++|+++|+.+++.--.
T Consensus 9 kyRP~~f~eivGQe~i~~~L~~~i~-----------~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~ 77 (620)
T PRK14954 9 KYRPSKFADITAQEHITHTIQNSLR-----------MDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEV 77 (620)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccccc
Confidence 4456799999999999999888764 35788899999999999999999999998763100
Q ss_pred -eecchh---hh----------hhhh---hhHHHHHHHHHHHHc----CCCeEEEEcCCCccccCCccCCcccHHHHHHH
Q 007190 233 -RAGSEF---EE----------MFVG---VGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQL 291 (613)
Q Consensus 233 -is~s~~---~~----------~~~g---~~~~~vr~lf~~A~~----~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~L 291 (613)
-.|... .. .+.+ .+...++++.+.+.. ....|++|||+|.+. ....+.|
T Consensus 78 ~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt----------~~a~naL 147 (620)
T PRK14954 78 TEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS----------TAAFNAF 147 (620)
T ss_pred CCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC----------HHHHHHH
Confidence 011111 00 0111 123455555555421 234599999999982 3567889
Q ss_pred HHHhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCC
Q 007190 292 LVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFN 370 (613)
Q Consensus 292 L~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~s 370 (613)
+..|+. +...+++|.+|+.+..|.+.+++ |+ ..+.|..++.++....++..++..+.. ++..+..|+..+.| +
T Consensus 148 LK~LEe--Pp~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~G-d 221 (620)
T PRK14954 148 LKTLEE--PPPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQG-S 221 (620)
T ss_pred HHHHhC--CCCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-C
Confidence 999885 33445666666777888888887 66 689999999999888888887765542 45567888887765 6
Q ss_pred HHHHHHHHHHHHHHHH-HhCCCccCHHHHHHHH
Q 007190 371 GADLANLVNIAAIKAA-VDGGEKLTATELEFAK 402 (613)
Q Consensus 371 gadL~~lv~~Aa~~A~-~~~~~~It~~dl~~A~ 402 (613)
.+++.+.++....++. ......||.+++.+.+
T Consensus 222 lr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 222 MRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred HHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 6777777766554431 1225678888776654
No 120
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.60 E-value=7.9e-15 Score=161.56 Aligned_cols=208 Identities=20% Similarity=0.296 Sum_probs=160.8
Q ss_pred CCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCC-------eeEe-
Q 007190 162 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP-------FFYR- 233 (613)
Q Consensus 162 ~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~p-------fi~i- 233 (613)
.+++.+|+|++|++.+...|++.+.. .+.+.+.||+||.|||||++||.+|+.+++. +..+
T Consensus 9 KyRP~~F~evvGQe~v~~~L~nal~~-----------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~ 77 (515)
T COG2812 9 KYRPKTFDDVVGQEHVVKTLSNALEN-----------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCI 77 (515)
T ss_pred HhCcccHHHhcccHHHHHHHHHHHHh-----------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhh
Confidence 45668999999999999999998863 5566789999999999999999999988764 2111
Q ss_pred ec--------chhhhh--hhhhhHHHHHHHHHHHH----cCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccc
Q 007190 234 AG--------SEFEEM--FVGVGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE 299 (613)
Q Consensus 234 s~--------s~~~~~--~~g~~~~~vr~lf~~A~----~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~ 299 (613)
+| .++.+. -...+-..+|++.+.+. .....|.+|||+|.| ..+..|.||+.++ +
T Consensus 78 ~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML----------S~~afNALLKTLE--E 145 (515)
T COG2812 78 SCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML----------SKQAFNALLKTLE--E 145 (515)
T ss_pred hhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh----------hHHHHHHHhcccc--c
Confidence 11 111111 11224456777777764 234569999999999 5678999999999 5
Q ss_pred cCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChh-cHHHHHhcCCCCCHHHHHHHH
Q 007190 300 QNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDV-DVKAIARGTPGFNGADLANLV 378 (613)
Q Consensus 300 ~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~-dl~~la~~t~G~sgadL~~lv 378 (613)
+...|++|.||..++.+++.+++ |+ .++.|..-+.++....|+..+.+..+..+. .+..+++...| |.+|...++
T Consensus 146 PP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDalslL 221 (515)
T COG2812 146 PPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALSLL 221 (515)
T ss_pred CccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHHHH
Confidence 77889999999999999999998 87 577888899999999999999888777444 47888888887 899999999
Q ss_pred HHHHHHHHHhCCCccCHHHHHH
Q 007190 379 NIAAIKAAVDGGEKLTATELEF 400 (613)
Q Consensus 379 ~~Aa~~A~~~~~~~It~~dl~~ 400 (613)
+++.... ...||.+.+..
T Consensus 222 Dq~i~~~----~~~It~~~v~~ 239 (515)
T COG2812 222 DQAIAFG----EGEITLESVRD 239 (515)
T ss_pred HHHHHcc----CCcccHHHHHH
Confidence 9887543 24566666543
No 121
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.60 E-value=3.9e-14 Score=148.79 Aligned_cols=207 Identities=22% Similarity=0.263 Sum_probs=140.4
Q ss_pred cccCCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcC-----CCeeE
Q 007190 158 EVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG-----VPFFY 232 (613)
Q Consensus 158 ~~~~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~-----~pfi~ 232 (613)
.|.+...+.+|+|++|.+++++.+...+. ....| +++|+||||||||++++++++++. .+++.
T Consensus 6 ~w~~kyrP~~~~~~~g~~~~~~~l~~~i~-----------~~~~~-~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~ 73 (319)
T PRK00440 6 IWVEKYRPRTLDEIVGQEEIVERLKSYVK-----------EKNMP-HLLFAGPPGTGKTTAALALARELYGEDWRENFLE 73 (319)
T ss_pred ccchhhCCCcHHHhcCcHHHHHHHHHHHh-----------CCCCC-eEEEECCCCCCHHHHHHHHHHHHcCCccccceEE
Confidence 46667778899999999999988887764 12233 589999999999999999999873 34555
Q ss_pred eecchhhhhhhhhhHHHHHHHHH-HHHc-----CCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEE
Q 007190 233 RAGSEFEEMFVGVGARRVRSLFQ-AAKK-----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIIL 306 (613)
Q Consensus 233 is~s~~~~~~~g~~~~~vr~lf~-~A~~-----~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViV 306 (613)
+++++-.. ...+++.+. .+.. ..+.+|+|||+|.+.. ...+.|+..++....+ ..+
T Consensus 74 ~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~----------~~~~~L~~~le~~~~~--~~l 135 (319)
T PRK00440 74 LNASDERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS----------DAQQALRRTMEMYSQN--TRF 135 (319)
T ss_pred eccccccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH----------HHHHHHHHHHhcCCCC--CeE
Confidence 55443211 111222211 1211 2356999999999832 2345566666654433 345
Q ss_pred EeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 007190 307 MAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKA 385 (613)
Q Consensus 307 IaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A 385 (613)
|.++|.+..+.+++.+ |+. .+.+++|+.++...+++.++++.+.. ++..+..+++.+.| +.+.+.+.++.+..
T Consensus 136 Il~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~~~~-- 209 (319)
T PRK00440 136 ILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQAAAA-- 209 (319)
T ss_pred EEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH--
Confidence 5567777777778877 774 68999999999999999998776553 45567888887654 55555555554332
Q ss_pred HHhCCCccCHHHHHHHHH
Q 007190 386 AVDGGEKLTATELEFAKD 403 (613)
Q Consensus 386 ~~~~~~~It~~dl~~A~~ 403 (613)
....||.+++..+..
T Consensus 210 ---~~~~it~~~v~~~~~ 224 (319)
T PRK00440 210 ---TGKEVTEEAVYKITG 224 (319)
T ss_pred ---cCCCCCHHHHHHHhC
Confidence 136799999987653
No 122
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.60 E-value=4.6e-14 Score=161.10 Aligned_cols=319 Identities=18% Similarity=0.184 Sum_probs=178.2
Q ss_pred cccCCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc----------C
Q 007190 158 EVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------G 227 (613)
Q Consensus 158 ~~~~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~----------~ 227 (613)
++.....+.+|++++|++++.+.+...+. . ..|.+++|+||||||||++|+++++.. +
T Consensus 143 ~~~~~~rp~~~~~iiGqs~~~~~l~~~ia---~---------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~ 210 (615)
T TIGR02903 143 SAQSLLRPRAFSEIVGQERAIKALLAKVA---S---------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAED 210 (615)
T ss_pred HHhhhcCcCcHHhceeCcHHHHHHHHHHh---c---------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCC
Confidence 34444556799999999999887654432 1 234579999999999999999998755 4
Q ss_pred CCeeEeecchhhh-------hhhhhhH----HHHHHHHHH----------HHcCCCeEEEEcCCCccccCCccCCcccHH
Q 007190 228 VPFFYRAGSEFEE-------MFVGVGA----RRVRSLFQA----------AKKKAPCIIFIDEIDAVGSTRKQWEGHTKK 286 (613)
Q Consensus 228 ~pfi~is~s~~~~-------~~~g~~~----~~vr~lf~~----------A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~ 286 (613)
.+|+.++|..+.. .+.+... ...+..+.. .......+|||||++.|. ..
T Consensus 211 ~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld----------~~ 280 (615)
T TIGR02903 211 APFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD----------PL 280 (615)
T ss_pred CCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC----------HH
Confidence 6799999876521 1111110 001111110 001123599999999882 23
Q ss_pred HHHHHHHHhhccc--------------------------cCCceEEEee-cCCCCCCChhhcCCCccceEEEccCCCHhh
Q 007190 287 TLHQLLVEMDGFE--------------------------QNEGIILMAA-TNLPDILDPALTRPGRFDRHIVVPNPDVRG 339 (613)
Q Consensus 287 ~l~~LL~~ldg~~--------------------------~~~~ViVIaa-TN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~ 339 (613)
....|+..++.-. ....+++|++ |+.++.++++|++ ||. .+.+++++.++
T Consensus 281 ~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~ed 357 (615)
T TIGR02903 281 LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPED 357 (615)
T ss_pred HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHH
Confidence 3444544443210 1223566654 5668889999987 886 67889999999
Q ss_pred HHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh--------CCCccCHHHHHHHHHHHhcCCc
Q 007190 340 RQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVD--------GGEKLTATELEFAKDRILMGTE 410 (613)
Q Consensus 340 R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~--------~~~~It~~dl~~A~~~v~~g~~ 410 (613)
+..|++.++.+.... ++..+..|++.+ +.++...+++..+...+..+ ....|+.+|+++++..-..
T Consensus 358 i~~Il~~~a~~~~v~ls~eal~~L~~ys--~~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~r~--- 432 (615)
T TIGR02903 358 IALIVLNAAEKINVHLAAGVEELIARYT--IEGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQISRL--- 432 (615)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHCC--CcHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCCcC---
Confidence 999999998865432 333466677665 35666656665554443221 2236899999988753211
Q ss_pred cccccchhhhHHHHHHHHhhhHHHHHhcCCCCCeEEEEE-e-ecC-CccceEEeccCCCcccccHHHHHHhhHHHccHHH
Q 007190 411 RKTMFISEESKKLTAYHESGHAIVAFNTEGAHPIHKATI-M-PRG-SALGMVTQLPSSDETSVSQKQLLARLDVCMGGRV 487 (613)
Q Consensus 411 ~~~~~~~~~~~~~~A~hEaGhAlva~~~~~~~~v~~vti-~-prg-~~~G~~~~~~~~~~~~~t~~~~~~~i~~~l~Gra 487 (613)
.+....+..--.+.||+....+.+....+..|.. + ++| .+.|.+. +|. .....+|+.+.+-+.++-.
T Consensus 433 -----~~~~~~~~~~~~~~g~v~~~~~~g~~g~~v~vE~~~~~~g~pg~~~vg-l~~-~~~~e~kerv~~A~~~l~~--- 502 (615)
T TIGR02903 433 -----SPYEKRKASPTYEVGHVFGLGVSGFVGSVLEIEAVAFEAKEPGKGTVR-FND-TAGSMAKDSVFNAASVIRK--- 502 (615)
T ss_pred -----ccchhhhccCCCCcEEEEEEEEeCCCcEEEEEEEEEecCCCCCCceEe-eCC-cchHHHHHHHHHHHHHHHH---
Confidence 1111112222234565554434433333444432 2 333 2333332 222 2334455555544432211
Q ss_pred HHHHHhCCCC---------CCCCcchHHHHHHHHHHHH
Q 007190 488 AEELIFGRDH---------ITTGASSDLHSATELAHYM 516 (613)
Q Consensus 488 AE~~~~g~~~---------~~~ga~~Dl~~at~~a~~m 516 (613)
.-.+-|.... --.|.+-||.-|..++..+
T Consensus 503 ~~g~~~~~~di~vnl~~~~~k~gpsadLaia~ailSa~ 540 (615)
T TIGR02903 503 ITGKDLSNYDIHVNVIGGGRIDGPSAGAAITLCMISAI 540 (615)
T ss_pred hCCCCCCCeeEEEEcCCCCCCCCchHHHHHHHHHHHhc
Confidence 0001122111 1246788999888777654
No 123
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=2.6e-14 Score=162.60 Aligned_cols=210 Identities=19% Similarity=0.239 Sum_probs=144.9
Q ss_pred CCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeE---ee---
Q 007190 161 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFY---RA--- 234 (613)
Q Consensus 161 ~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~---is--- 234 (613)
....+.+|+||+|++.+++.|+..+. ..+.++.+|||||||+|||++|+++|+.+++..-. ..
T Consensus 8 ~kyRP~~~~eiiGq~~~~~~L~~~i~-----------~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~ 76 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVVQTLRNAIA-----------EGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGT 76 (585)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHH-----------hCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 34566899999999999999988775 23567788999999999999999999987642210 00
Q ss_pred cch---h--------hhhh--hhhhHHHHHHHHHHHHc----CCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhc
Q 007190 235 GSE---F--------EEMF--VGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDG 297 (613)
Q Consensus 235 ~s~---~--------~~~~--~g~~~~~vr~lf~~A~~----~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg 297 (613)
|+. + .+.. ...+...++++.+.+.. ....||||||+|.+. ...++.|+..++.
T Consensus 77 c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~----------~~a~naLLk~LEe 146 (585)
T PRK14950 77 CEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS----------TAAFNALLKTLEE 146 (585)
T ss_pred CHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC----------HHHHHHHHHHHhc
Confidence 110 0 0000 01122334554443332 234699999999882 4567889988885
Q ss_pred cccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHH
Q 007190 298 FEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLAN 376 (613)
Q Consensus 298 ~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~ 376 (613)
. ...+++|.+|+.++.+.+.+++ |+ ..+.|+.++..+...+++..+.+.++. ++..+..|+..+.| +.+++.+
T Consensus 147 p--p~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dlr~al~ 220 (585)
T PRK14950 147 P--PPHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SMRDAEN 220 (585)
T ss_pred C--CCCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHH
Confidence 3 3455666667777778888877 77 468899999999999998888766543 34457788887776 7888888
Q ss_pred HHHHHHHHHHHhCCCccCHHHHHHH
Q 007190 377 LVNIAAIKAAVDGGEKLTATELEFA 401 (613)
Q Consensus 377 lv~~Aa~~A~~~~~~~It~~dl~~A 401 (613)
.++....+ +...||.++++..
T Consensus 221 ~LekL~~y----~~~~It~e~V~~l 241 (585)
T PRK14950 221 LLQQLATT----YGGEISLSQVQSL 241 (585)
T ss_pred HHHHHHHh----cCCCCCHHHHHHH
Confidence 88765432 3457888887654
No 124
>PRK05642 DNA replication initiation factor; Validated
Probab=99.59 E-value=1.3e-13 Score=139.69 Aligned_cols=179 Identities=19% Similarity=0.193 Sum_probs=126.8
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCc
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRK 278 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~ 278 (613)
..+++||||+|||||+|++++++++ +..+++++..++.... ..+.+..+.. .+|+|||++.+.++.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~~--d~LiiDDi~~~~~~~- 113 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQY--ELVCLDDLDVIAGKA- 113 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhhC--CEEEEechhhhcCCh-
Confidence 3579999999999999999998764 5778889888776531 1223333322 489999999884431
Q ss_pred cCCcccHHHHHHHHHHhhccccCCceEEEeecCCCCC---CChhhcCCCccc--eEEEccCCCHhhHHHHHHHHhccCCC
Q 007190 279 QWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI---LDPALTRPGRFD--RHIVVPNPDVRGRQEILELYLQDKPL 353 (613)
Q Consensus 279 ~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~---Ld~aLlRpgRFd--~~I~v~~Pd~~~R~~IL~~~l~~~~l 353 (613)
.....|+..++.+..+...++++++..|.. ..|.|++ ||. ..+.+.+|+.+++..+++..+....+
T Consensus 114 -------~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~ 184 (234)
T PRK05642 114 -------DWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGL 184 (234)
T ss_pred -------HHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCC
Confidence 222345555554445556777877766643 3688887 885 57788999999999999976655444
Q ss_pred C-ChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 007190 354 A-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAK 402 (613)
Q Consensus 354 ~-~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A~ 402 (613)
. ++..++.|++..++ +.+.+.++++.-.. ++...++.||..-+++++
T Consensus 185 ~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~-~~l~~~~~it~~~~~~~L 232 (234)
T PRK05642 185 HLTDEVGHFILTRGTR-SMSALFDLLERLDQ-ASLQAQRKLTIPFLKETL 232 (234)
T ss_pred CCCHHHHHHHHHhcCC-CHHHHHHHHHHHHH-HHHHcCCcCCHHHHHHHh
Confidence 3 44557788888875 88999999987654 455555779988887764
No 125
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.58 E-value=6.1e-14 Score=152.57 Aligned_cols=218 Identities=25% Similarity=0.298 Sum_probs=135.0
Q ss_pred CCCcc-cCCCHHHHHHHHHHHHH----hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhh
Q 007190 166 KTFKD-VKGCDDAKQELVEVVEY----LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 240 (613)
Q Consensus 166 ~~f~d-V~G~~e~k~~L~eiv~~----l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~ 240 (613)
..+++ |+|++++|+.|...+.. ++.......-......++||+||||||||++|+++|..+++||+.++++.+.+
T Consensus 67 ~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~ 146 (412)
T PRK05342 67 AHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTE 146 (412)
T ss_pred HHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhccc
Confidence 34554 89999999999776522 21110000000113468999999999999999999999999999999988754
Q ss_pred -hhhhhhHH-HHHHHHHHH----HcCCCeEEEEcCCCccccCCccCC----cccHHHHHHHHHHhhccc-----------
Q 007190 241 -MFVGVGAR-RVRSLFQAA----KKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFE----------- 299 (613)
Q Consensus 241 -~~~g~~~~-~vr~lf~~A----~~~~P~ILfIDEiD~l~~~r~~~~----~~~~~~l~~LL~~ldg~~----------- 299 (613)
.|+|.... .+..++..+ ....++||||||||.+..++...+ -....+++.||..|++-.
T Consensus 147 ~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~ 226 (412)
T PRK05342 147 AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKH 226 (412)
T ss_pred CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCc
Confidence 57776433 344444332 234578999999999977632211 112457788888888631
Q ss_pred cCCceEEEeecCCCC----------------------------------------------------CCChhhcCCCccc
Q 007190 300 QNEGIILMAATNLPD----------------------------------------------------ILDPALTRPGRFD 327 (613)
Q Consensus 300 ~~~~ViVIaaTN~p~----------------------------------------------------~Ld~aLlRpgRFd 327 (613)
+....++|.|+|-.. .+.|.++ ||+|
T Consensus 227 ~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld 304 (412)
T PRK05342 227 PQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLP 304 (412)
T ss_pred CCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCC
Confidence 112345555555410 0233443 5999
Q ss_pred eEEEccCCCHhhHHHHHHH----Hhc-------cCCCC---ChhcHHHHHhc--CCCCCHHHHHHHHHHHHHHH
Q 007190 328 RHIVVPNPDVRGRQEILEL----YLQ-------DKPLA---DDVDVKAIARG--TPGFNGADLANLVNIAAIKA 385 (613)
Q Consensus 328 ~~I~v~~Pd~~~R~~IL~~----~l~-------~~~l~---~d~dl~~la~~--t~G~sgadL~~lv~~Aa~~A 385 (613)
..+.|.+.+.++..+|+.. .++ ..... ++..+..|++. ..++-.+.|+.+++....-.
T Consensus 305 ~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~ 378 (412)
T PRK05342 305 VVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDV 378 (412)
T ss_pred eeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHH
Confidence 9999999999999998873 222 11111 22335556653 33444566666666554433
No 126
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.57 E-value=4.6e-14 Score=164.62 Aligned_cols=218 Identities=22% Similarity=0.272 Sum_probs=144.1
Q ss_pred Cc-ccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhh------
Q 007190 168 FK-DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE------ 240 (613)
Q Consensus 168 f~-dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~------ 240 (613)
++ |..|++++|+.+.+.+...+... ......++|+||||+|||++++.+|+.++.+|+.++.+...+
T Consensus 320 l~~~~~g~~~vK~~i~~~l~~~~~~~------~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g 393 (784)
T PRK10787 320 LDTDHYGLERVKDRILEYLAVQSRVN------KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRG 393 (784)
T ss_pred hhhhccCHHHHHHHHHHHHHHHHhcc------cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhcc
Confidence 44 48999999999988776433211 112236999999999999999999999999999888665422
Q ss_pred ---hhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhc-----cc--------cCCce
Q 007190 241 ---MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDG-----FE--------QNEGI 304 (613)
Q Consensus 241 ---~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg-----~~--------~~~~V 304 (613)
.|.|....++...+..+....| ||||||+|.+..... +. ....|+..+|. |. .-++|
T Consensus 394 ~~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~---g~---~~~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 394 HRRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMR---GD---PASALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred chhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccC---CC---HHHHHHHHhccccEEEEecccccccccCCce
Confidence 3556655666666666554445 899999999965421 11 23455555552 11 22679
Q ss_pred EEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhcc-----CCCC------ChhcHHHHHh-cCCCCCHH
Q 007190 305 ILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQD-----KPLA------DDVDVKAIAR-GTPGFNGA 372 (613)
Q Consensus 305 iVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~-----~~l~------~d~dl~~la~-~t~G~sga 372 (613)
++|+|+|.. .|+++|+. || ..|.++.++.++..+|.+.|+.. ..+. ++..+..+++ .+..+-.+
T Consensus 467 ~~i~TaN~~-~i~~aLl~--R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR 542 (784)
T PRK10787 467 MFVATSNSM-NIPAPLLD--RM-EVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVR 542 (784)
T ss_pred EEEEcCCCC-CCCHHHhc--ce-eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCc
Confidence 999999987 59999998 99 58899999999999999999842 1111 1222445553 23333345
Q ss_pred HHHHHHHHHHHHHHH----hCC---CccCHHHHHHHH
Q 007190 373 DLANLVNIAAIKAAV----DGG---EKLTATELEFAK 402 (613)
Q Consensus 373 dL~~lv~~Aa~~A~~----~~~---~~It~~dl~~A~ 402 (613)
.|+.+++..+..... .+. -.|+.+++...+
T Consensus 543 ~LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~l 579 (784)
T PRK10787 543 SLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYL 579 (784)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHh
Confidence 666555544433322 222 246777765543
No 127
>PRK06620 hypothetical protein; Validated
Probab=99.56 E-value=1.1e-13 Score=138.38 Aligned_cols=194 Identities=13% Similarity=0.163 Sum_probs=127.3
Q ss_pred CCCCCCcccCCCH---HHHHHHHHHHHHhcCchhhhhcCCCCC--ceEEEEccCCChHHHHHHHHHHhcCCCeeEeecch
Q 007190 163 KNVKTFKDVKGCD---DAKQELVEVVEYLKNPSKFTRLGGKLP--KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE 237 (613)
Q Consensus 163 ~~~~~f~dV~G~~---e~k~~L~eiv~~l~~p~~~~~lg~~~p--~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~ 237 (613)
.+..+|++++--+ .+...++++.+ .+ + ..| +.++||||||||||+|++++++..+..++. ...
T Consensus 10 ~~~~tfd~Fvvg~~N~~a~~~~~~~~~---~~------~-~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~ 77 (214)
T PRK06620 10 SSKYHPDEFIVSSSNDQAYNIIKNWQC---GF------G-VNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIF 77 (214)
T ss_pred CCCCCchhhEecccHHHHHHHHHHHHH---cc------c-cCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhh
Confidence 3445788876544 34444444332 11 1 123 579999999999999999999988764332 111
Q ss_pred hhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCCC--
Q 007190 238 FEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI-- 315 (613)
Q Consensus 238 ~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~-- 315 (613)
.. .+.+ + ...+|+|||||.+ ....+-.++ +.+..+...++|+++..|..
T Consensus 78 ~~-----------~~~~---~--~~d~lliDdi~~~----------~~~~lf~l~---N~~~e~g~~ilits~~~p~~l~ 128 (214)
T PRK06620 78 FN-----------EEIL---E--KYNAFIIEDIENW----------QEPALLHIF---NIINEKQKYLLLTSSDKSRNFT 128 (214)
T ss_pred hc-----------hhHH---h--cCCEEEEeccccc----------hHHHHHHHH---HHHHhcCCEEEEEcCCCccccc
Confidence 10 1111 1 2358999999954 112233333 33334556788888777654
Q ss_pred CChhhcCCCccce--EEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCc
Q 007190 316 LDPALTRPGRFDR--HIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEK 392 (613)
Q Consensus 316 Ld~aLlRpgRFd~--~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~ 392 (613)
+ |+|++ |+.. .+.+.+|+.+.+..+++.+++..++. ++..++.|++..+| +.+.+.++++.....+ ...++.
T Consensus 129 l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~-~~~~~~ 203 (214)
T PRK06620 129 L-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILENINYFA-LISKRK 203 (214)
T ss_pred h-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHH-HHcCCC
Confidence 5 78887 8864 78999999999999999988765543 44457888888875 8889999988754333 334467
Q ss_pred cCHHHHHHHH
Q 007190 393 LTATELEFAK 402 (613)
Q Consensus 393 It~~dl~~A~ 402 (613)
||.+.+++++
T Consensus 204 it~~~~~~~l 213 (214)
T PRK06620 204 ITISLVKEVL 213 (214)
T ss_pred CCHHHHHHHh
Confidence 9998887764
No 128
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.55 E-value=2e-13 Score=140.55 Aligned_cols=185 Identities=21% Similarity=0.236 Sum_probs=118.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCeeEeecch------hhhhhhhhhHHHH-H--------------------HHHH
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE------FEEMFVGVGARRV-R--------------------SLFQ 255 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~------~~~~~~g~~~~~v-r--------------------~lf~ 255 (613)
+.+||+||||||||++|+++|...|.||+.++|.. +...+.+.....+ . .++.
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 46999999999999999999999999999998754 2222221111111 1 1222
Q ss_pred HHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccc--------------cCCceEEEeecCCCC-----CC
Q 007190 256 AAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE--------------QNEGIILMAATNLPD-----IL 316 (613)
Q Consensus 256 ~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~--------------~~~~ViVIaaTN~p~-----~L 316 (613)
.++. +.+|+|||||.+ ...+.+.|+..|+.-. .+.++.||+|+|... .+
T Consensus 102 A~~~--g~~lllDEi~r~----------~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l 169 (262)
T TIGR02640 102 AVRE--GFTLVYDEFTRS----------KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHET 169 (262)
T ss_pred HHHc--CCEEEEcchhhC----------CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecc
Confidence 2222 359999999987 2345556666554311 223678999999763 56
Q ss_pred ChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHH---HH---hcCC-CCCHHHHHHHHHHHHHHHHHhC
Q 007190 317 DPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKA---IA---RGTP-GFNGADLANLVNIAAIKAAVDG 389 (613)
Q Consensus 317 d~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~---la---~~t~-G~sgadL~~lv~~Aa~~A~~~~ 389 (613)
++++++ || ..+.++.|+.++-.+|++.+.. .. +...+. ++ +... -..++ ++..+..+...+....
T Consensus 170 ~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~---~~-~~~~~~iv~~~~~~R~~~~~~~~~-~r~~i~~~~~~~~~~~ 241 (262)
T TIGR02640 170 QDALLD--RL-ITIFMDYPDIDTETAILRAKTD---VA-EDSAATIVRLVREFRASGDEITSG-LRASLMIAEVATQQDI 241 (262)
T ss_pred cHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC---CC-HHHHHHHHHHHHHHHhhCCccCCc-HHHHHHHHHHHHHcCC
Confidence 889998 98 7899999999999999998762 22 111111 11 1011 11111 5555555555555566
Q ss_pred CCccCHHHHHHHHHHHhc
Q 007190 390 GEKLTATELEFAKDRILM 407 (613)
Q Consensus 390 ~~~It~~dl~~A~~~v~~ 407 (613)
...++.+||.+..-.++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~ 259 (262)
T TIGR02640 242 PVDVDDEDFVDLCIDILA 259 (262)
T ss_pred CCCCCcHHHHHHHHHHhc
Confidence 778888888887766654
No 129
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.55 E-value=3.8e-13 Score=144.48 Aligned_cols=228 Identities=19% Similarity=0.243 Sum_probs=160.6
Q ss_pred CCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc-----CCCeeEeecc
Q 007190 162 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAGS 236 (613)
Q Consensus 162 ~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~-----~~pfi~is~s 236 (613)
-.+..||++.+.-+.-.....-...+-..|.. .-..++||||+|.|||+|++|+++++ +..+++++.+
T Consensus 80 l~~~ytFdnFv~g~~N~~A~aa~~~va~~~g~-------~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se 152 (408)
T COG0593 80 LNPKYTFDNFVVGPSNRLAYAAAKAVAENPGG-------AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSE 152 (408)
T ss_pred CCCCCchhheeeCCchHHHHHHHHHHHhccCC-------cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHH
Confidence 34556899977555433333333333333321 22359999999999999999999876 2358899999
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCCCC
Q 007190 237 EFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 316 (613)
Q Consensus 237 ~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~L 316 (613)
.|...++......-.+-|+.-. .-.+++||+|+.+.++. .+...++..+..+..+.+-+|+.+...|..+
T Consensus 153 ~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~--------~~qeefFh~FN~l~~~~kqIvltsdr~P~~l 222 (408)
T COG0593 153 DFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKE--------RTQEEFFHTFNALLENGKQIVLTSDRPPKEL 222 (408)
T ss_pred HHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCCh--------hHHHHHHHHHHHHHhcCCEEEEEcCCCchhh
Confidence 9888776654443344455544 33699999999997653 2333444444444445556777777777654
Q ss_pred ---ChhhcCCCccce--EEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC
Q 007190 317 ---DPALTRPGRFDR--HIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGG 390 (613)
Q Consensus 317 ---d~aLlRpgRFd~--~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~ 390 (613)
.|.|.+ ||.. .+.+.+||.+.|..||+..+...++. ++.-+..++.... -+.+++..++++....+...+.
T Consensus 223 ~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~-~nvReLegaL~~l~~~a~~~~~ 299 (408)
T COG0593 223 NGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLD-RNVRELEGALNRLDAFALFTKR 299 (408)
T ss_pred ccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHhcCc
Confidence 588888 9987 77888999999999999988776655 3444667777766 4889999999988877766665
Q ss_pred CccCHHHHHHHHHHHhcCCc
Q 007190 391 EKLTATELEFAKDRILMGTE 410 (613)
Q Consensus 391 ~~It~~dl~~A~~~v~~g~~ 410 (613)
.||.+.+.+++.......+
T Consensus 300 -~iTi~~v~e~L~~~~~~~~ 318 (408)
T COG0593 300 -AITIDLVKEILKDLLRAGE 318 (408)
T ss_pred -cCcHHHHHHHHHHhhcccc
Confidence 9999999999988766544
No 130
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.55 E-value=1.6e-13 Score=147.22 Aligned_cols=173 Identities=29% Similarity=0.414 Sum_probs=125.4
Q ss_pred ccCCCHHHHHHHHHHHHH-hcCchhhhhc-CCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhh-hhhh-h
Q 007190 170 DVKGCDDAKQELVEVVEY-LKNPSKFTRL-GGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE-MFVG-V 245 (613)
Q Consensus 170 dV~G~~e~k~~L~eiv~~-l~~p~~~~~l-g~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~-~~~g-~ 245 (613)
-|+|++++|+.+...+.. ++.......+ ....|+++||+||||||||++|+++|+.++.||+.+++..+.+ .|+| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 389999999999876643 1211110111 2335789999999999999999999999999999999988764 5776 4
Q ss_pred hHHHHHHHHHHHH-------------------------------------------------------------------
Q 007190 246 GARRVRSLFQAAK------------------------------------------------------------------- 258 (613)
Q Consensus 246 ~~~~vr~lf~~A~------------------------------------------------------------------- 258 (613)
.+..++.+|..|.
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 5566666665550
Q ss_pred ------------------------------------------------------------------------cCCCeEEE
Q 007190 259 ------------------------------------------------------------------------KKAPCIIF 266 (613)
Q Consensus 259 ------------------------------------------------------------------------~~~P~ILf 266 (613)
...-.|||
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 01224999
Q ss_pred EcCCCccccCCccC--CcccHHHHHHHHHHhhccc--------cCCceEEEeecC----CCCCCChhhcCCCccceEEEc
Q 007190 267 IDEIDAVGSTRKQW--EGHTKKTLHQLLVEMDGFE--------QNEGIILMAATN----LPDILDPALTRPGRFDRHIVV 332 (613)
Q Consensus 267 IDEiD~l~~~r~~~--~~~~~~~l~~LL~~ldg~~--------~~~~ViVIaaTN----~p~~Ld~aLlRpgRFd~~I~v 332 (613)
|||||.+..+.... +-...-+.+.||..++|-. ...++++||+.- .|..|=|.|. |||...+.+
T Consensus 253 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L 330 (441)
T TIGR00390 253 IDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRVEL 330 (441)
T ss_pred EEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEEC
Confidence 99999998765321 2233557788999998732 245688888764 3556667776 599999999
Q ss_pred cCCCHhhHHHHH
Q 007190 333 PNPDVRGRQEIL 344 (613)
Q Consensus 333 ~~Pd~~~R~~IL 344 (613)
..++.++...||
T Consensus 331 ~~L~~edL~rIL 342 (441)
T TIGR00390 331 QALTTDDFERIL 342 (441)
T ss_pred CCCCHHHHHHHh
Confidence 999999988887
No 131
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.54 E-value=1.3e-13 Score=138.15 Aligned_cols=199 Identities=22% Similarity=0.324 Sum_probs=128.7
Q ss_pred CCCCCcccC-C--CHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc-----CCCeeEeec
Q 007190 164 NVKTFKDVK-G--CDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAG 235 (613)
Q Consensus 164 ~~~~f~dV~-G--~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~-----~~pfi~is~ 235 (613)
+..||++.+ | +..+......+.. ++.. .-..++||||+|+|||+|.+|+++++ +..++++++
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~---~~~~-------~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~ 72 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAE---NPGE-------RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA 72 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHH---STTT-------SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHh---cCCC-------CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH
Confidence 346899885 4 3344444443332 2211 22359999999999999999999874 567999999
Q ss_pred chhhhhhhhhhHH-HHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCC
Q 007190 236 SEFEEMFVGVGAR-RVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD 314 (613)
Q Consensus 236 s~~~~~~~g~~~~-~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~ 314 (613)
.+|...+...... .+.++....+ ...+|+||++|.+.++ ..+...|+..++.+..+.+.+|+++...|.
T Consensus 73 ~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~--------~~~q~~lf~l~n~~~~~~k~li~ts~~~P~ 142 (219)
T PF00308_consen 73 EEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAGK--------QRTQEELFHLFNRLIESGKQLILTSDRPPS 142 (219)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTTH--------HHHHHHHHHHHHHHHHTTSEEEEEESS-TT
T ss_pred HHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcCc--------hHHHHHHHHHHHHHHhhCCeEEEEeCCCCc
Confidence 9998776544322 2233333333 3469999999999543 334555666666655666667777767776
Q ss_pred C---CChhhcCCCccce--EEEccCCCHhhHHHHHHHHhccCCCCChhc-HHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 007190 315 I---LDPALTRPGRFDR--HIVVPNPDVRGRQEILELYLQDKPLADDVD-VKAIARGTPGFNGADLANLVNIAAIKA 385 (613)
Q Consensus 315 ~---Ld~aLlRpgRFd~--~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~d-l~~la~~t~G~sgadL~~lv~~Aa~~A 385 (613)
. +++.|.+ ||.. .+.+.+|+.+.|.+|++..+...++.-+.+ +..|++..++ +.++|..++++...++
T Consensus 143 ~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 143 ELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRR-DVRELEGALNRLDAYA 216 (219)
T ss_dssp TTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTS-SHHHHHHHHHHHHHHH
T ss_pred cccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHHHHHh
Confidence 5 4677777 8876 889999999999999999998877664333 6677777764 8889999888766554
No 132
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.54 E-value=8.4e-14 Score=147.45 Aligned_cols=215 Identities=24% Similarity=0.323 Sum_probs=135.1
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc-------CCCeeEee--c
Q 007190 165 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-------GVPFFYRA--G 235 (613)
Q Consensus 165 ~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~-------~~pfi~is--~ 235 (613)
+..|++|+|++++++.|.-... ++. -.++||+||||||||++||++++-+ +.|+-..+ +
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~---~~~---------~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~ 71 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAI---DPG---------IGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPED 71 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHh---ccC---------CCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccC
Confidence 4679999999999888764321 111 1379999999999999999999977 33221111 0
Q ss_pred -chh---------------hhhhhhhhHHHH------------------HHHHHHHHcCCCeEEEEcCCCccccCCccCC
Q 007190 236 -SEF---------------EEMFVGVGARRV------------------RSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE 281 (613)
Q Consensus 236 -s~~---------------~~~~~g~~~~~v------------------r~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~ 281 (613)
.++ ...-.+.+..++ ...+..| ...+|||||++.+
T Consensus 72 ~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A---~~GiL~lDEInrl-------- 140 (334)
T PRK13407 72 CPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARA---NRGYLYIDEVNLL-------- 140 (334)
T ss_pred CcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEc---CCCeEEecChHhC--------
Confidence 000 000000000000 0111111 1249999999998
Q ss_pred cccHHHHHHHHHHhhccc-----------cCCceEEEeecCCCC-CCChhhcCCCccceEEEccCCCH-hhHHHHHHHHh
Q 007190 282 GHTKKTLHQLLVEMDGFE-----------QNEGIILMAATNLPD-ILDPALTRPGRFDRHIVVPNPDV-RGRQEILELYL 348 (613)
Q Consensus 282 ~~~~~~l~~LL~~ldg~~-----------~~~~ViVIaaTN~p~-~Ld~aLlRpgRFd~~I~v~~Pd~-~~R~~IL~~~l 348 (613)
...+++.|+..|+.-. ....+++++++|..+ .++++++. ||...+.++.|.. ++|.+|++...
T Consensus 141 --~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 141 --EDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred --CHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHhh
Confidence 3456667777765321 235689999999755 58999998 9999999998876 89999998754
Q ss_pred ccCC----C------C--------------------ChhcH---HHHHhcCC-CCCHHHHHHHHHHHHHHHHHhCCCccC
Q 007190 349 QDKP----L------A--------------------DDVDV---KAIARGTP-GFNGADLANLVNIAAIKAAVDGGEKLT 394 (613)
Q Consensus 349 ~~~~----l------~--------------------~d~dl---~~la~~t~-G~sgadL~~lv~~Aa~~A~~~~~~~It 394 (613)
.... . . ++..+ ..++..+. .-.-++|. +++.|...|+.++++.|+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~-l~~aA~a~A~l~Gr~~V~ 295 (334)
T PRK13407 217 AYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELT-LLRAARALAAFEGAEAVG 295 (334)
T ss_pred cccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHH-HHHHHHHHHHHcCCCeeC
Confidence 2210 0 0 01111 12222222 12345565 999999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 007190 395 ATELEFAKDRILM 407 (613)
Q Consensus 395 ~~dl~~A~~~v~~ 407 (613)
.+|+..+..-++.
T Consensus 296 ~~Di~~~~~~vl~ 308 (334)
T PRK13407 296 RSHLRSVATMALS 308 (334)
T ss_pred HHHHHHHHHHhhh
Confidence 9999877654443
No 133
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=3.8e-13 Score=153.24 Aligned_cols=203 Identities=18% Similarity=0.239 Sum_probs=145.2
Q ss_pred CCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCC------------
Q 007190 162 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------ 229 (613)
Q Consensus 162 ~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~p------------ 229 (613)
..++.+|+||+|++.+++.|...+. .++.|+.+|||||+|+|||++|+++|+.+.+.
T Consensus 10 kyRP~~f~~viGq~~~~~~L~~~i~-----------~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C 78 (614)
T PRK14971 10 KYRPSTFESVVGQEALTTTLKNAIA-----------TNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNEC 78 (614)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcc
Confidence 3456799999999999999888775 35678889999999999999999999987642
Q ss_pred -------------eeEeecchhhhhhhhhhHHHHHHHHHHHHcC----CCeEEEEcCCCccccCCccCCcccHHHHHHHH
Q 007190 230 -------------FFYRAGSEFEEMFVGVGARRVRSLFQAAKKK----APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLL 292 (613)
Q Consensus 230 -------------fi~is~s~~~~~~~g~~~~~vr~lf~~A~~~----~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL 292 (613)
++.+++++ ..+...++.+...+... ...|++|||+|.+ .....+.|+
T Consensus 79 ~sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~L----------s~~a~naLL 142 (614)
T PRK14971 79 ESCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHML----------SQAAFNAFL 142 (614)
T ss_pred hHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccC----------CHHHHHHHH
Confidence 11222111 11234566666655432 2359999999998 345788899
Q ss_pred HHhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCH
Q 007190 293 VEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNG 371 (613)
Q Consensus 293 ~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sg 371 (613)
..|+. .....++|.+|+.+..|-+.+++ |+ ..+.|.+++.++....++..+.+.++. ++..+..|+..+.| +.
T Consensus 143 K~LEe--pp~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g-dl 216 (614)
T PRK14971 143 KTLEE--PPSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG-GM 216 (614)
T ss_pred HHHhC--CCCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 99985 33456666777777888899988 77 579999999999999999888776655 33457788887754 66
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 007190 372 ADLANLVNIAAIKAAVDGGEKLTATELEFA 401 (613)
Q Consensus 372 adL~~lv~~Aa~~A~~~~~~~It~~dl~~A 401 (613)
+++.++++.....+ +.. |+.+++.+.
T Consensus 217 r~al~~Lekl~~y~---~~~-It~~~V~~~ 242 (614)
T PRK14971 217 RDALSIFDQVVSFT---GGN-ITYKSVIEN 242 (614)
T ss_pred HHHHHHHHHHHHhc---cCC-ccHHHHHHH
Confidence 77777766554432 322 777666544
No 134
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=6.4e-13 Score=142.63 Aligned_cols=215 Identities=23% Similarity=0.329 Sum_probs=152.5
Q ss_pred cCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCC-----eeEeecchhhhhhh--
Q 007190 171 VKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP-----FFYRAGSEFEEMFV-- 243 (613)
Q Consensus 171 V~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~p-----fi~is~s~~~~~~~-- 243 (613)
+.+.++..+.+..++... +.+..|.++++|||||||||.+++.+++++.-+ ++++||....+.|.
T Consensus 19 l~~Re~ei~~l~~~l~~~--------~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~ 90 (366)
T COG1474 19 LPHREEEINQLASFLAPA--------LRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVL 90 (366)
T ss_pred ccccHHHHHHHHHHHHHH--------hcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHH
Confidence 788898877777765431 123456679999999999999999999987543 89999977644321
Q ss_pred -------------hhhH-HHHHHHHHHHH-cCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEe
Q 007190 244 -------------GVGA-RRVRSLFQAAK-KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMA 308 (613)
Q Consensus 244 -------------g~~~-~~vr~lf~~A~-~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIa 308 (613)
|... .....+++... ...+-||++||+|.|..+.+ ..+..|+...+.. ..+|.+|+
T Consensus 91 ~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-------~~LY~L~r~~~~~--~~~v~vi~ 161 (366)
T COG1474 91 SKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG-------EVLYSLLRAPGEN--KVKVSIIA 161 (366)
T ss_pred HHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc-------hHHHHHHhhcccc--ceeEEEEE
Confidence 1111 12222333322 24567999999999976532 6788888776654 66789999
Q ss_pred ecCCC---CCCChhhcCCCccc-eEEEccCCCHhhHHHHHHHHhccCCCC---ChhcHHHHH---hcCCCCCHHHHHHHH
Q 007190 309 ATNLP---DILDPALTRPGRFD-RHIVVPNPDVRGRQEILELYLQDKPLA---DDVDVKAIA---RGTPGFNGADLANLV 378 (613)
Q Consensus 309 aTN~p---~~Ld~aLlRpgRFd-~~I~v~~Pd~~~R~~IL~~~l~~~~l~---~d~dl~~la---~~t~G~sgadL~~lv 378 (613)
.+|.. +.+||.+.+ +|. ..|.||+++.++..+|++...+..-.. ++.-+..+| ....| +.+-...+|
T Consensus 162 i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR~aidil 238 (366)
T COG1474 162 VSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DARKAIDIL 238 (366)
T ss_pred EeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cHHHHHHHH
Confidence 99976 467888877 443 368999999999999999988643111 222233344 33333 556666889
Q ss_pred HHHHHHHHHhCCCccCHHHHHHHHHHH
Q 007190 379 NIAAIKAAVDGGEKLTATELEFAKDRI 405 (613)
Q Consensus 379 ~~Aa~~A~~~~~~~It~~dl~~A~~~v 405 (613)
+.|+..|.+++...++.+++..|.+.+
T Consensus 239 r~A~eiAe~~~~~~v~~~~v~~a~~~~ 265 (366)
T COG1474 239 RRAGEIAEREGSRKVSEDHVREAQEEI 265 (366)
T ss_pred HHHHHHHHhhCCCCcCHHHHHHHHHHh
Confidence 999999999999999999999995544
No 135
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.52 E-value=3.8e-13 Score=144.46 Aligned_cols=173 Identities=28% Similarity=0.399 Sum_probs=126.7
Q ss_pred cCCCHHHHHHHHHHHHH-hcCchhhhhc-CCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhh-hhhh-hh
Q 007190 171 VKGCDDAKQELVEVVEY-LKNPSKFTRL-GGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE-MFVG-VG 246 (613)
Q Consensus 171 V~G~~e~k~~L~eiv~~-l~~p~~~~~l-g~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~-~~~g-~~ 246 (613)
|+|++++|+.+...+.. ++.......+ ....|+++||+||||||||++|+++|+.++.||+.++++.|.+ .|+| ..
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~ 96 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 96 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCH
Confidence 89999999999876632 1111110011 1123789999999999999999999999999999999998886 5877 44
Q ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Q 007190 247 ARRVRSLFQAAK-------------------------------------------------------------------- 258 (613)
Q Consensus 247 ~~~vr~lf~~A~-------------------------------------------------------------------- 258 (613)
+..++++|..|.
T Consensus 97 e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 176 (443)
T PRK05201 97 ESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEIE 176 (443)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEEE
Confidence 566677766661
Q ss_pred --c--------------------------------------------------------------------CCCeEEEEc
Q 007190 259 --K--------------------------------------------------------------------KAPCIIFID 268 (613)
Q Consensus 259 --~--------------------------------------------------------------------~~P~ILfID 268 (613)
. ..-.|||||
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiD 256 (443)
T PRK05201 177 VAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFID 256 (443)
T ss_pred ecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEE
Confidence 0 012499999
Q ss_pred CCCccccCCccC--CcccHHHHHHHHHHhhccc--------cCCceEEEeecC----CCCCCChhhcCCCccceEEEccC
Q 007190 269 EIDAVGSTRKQW--EGHTKKTLHQLLVEMDGFE--------QNEGIILMAATN----LPDILDPALTRPGRFDRHIVVPN 334 (613)
Q Consensus 269 EiD~l~~~r~~~--~~~~~~~l~~LL~~ldg~~--------~~~~ViVIaaTN----~p~~Ld~aLlRpgRFd~~I~v~~ 334 (613)
|||.+..+.+.. +-...-+.+.||..++|-. ...+|++||+-- .|++|-|.|. |||..++.+..
T Consensus 257 EiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L~~ 334 (443)
T PRK05201 257 EIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQ--GRFPIRVELDA 334 (443)
T ss_pred cchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEECCC
Confidence 999998765321 2223557788999998832 246688888754 4566777887 59999999999
Q ss_pred CCHhhHHHHHH
Q 007190 335 PDVRGRQEILE 345 (613)
Q Consensus 335 Pd~~~R~~IL~ 345 (613)
++.++...||.
T Consensus 335 L~~~dL~~ILt 345 (443)
T PRK05201 335 LTEEDFVRILT 345 (443)
T ss_pred CCHHHHHHHhc
Confidence 99999988873
No 136
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.52 E-value=7.5e-13 Score=132.75 Aligned_cols=193 Identities=20% Similarity=0.318 Sum_probs=136.9
Q ss_pred CCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchh
Q 007190 162 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEF 238 (613)
Q Consensus 162 ~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~ 238 (613)
....+.+++++|+++.|+.|.+-...+. .+.+..++||+|++|||||+++|++..+. |..++.++..++
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl--------~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L 91 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFL--------QGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL 91 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHH--------cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh
Confidence 3445789999999999999988665432 24577899999999999999999999866 678888887776
Q ss_pred hhhhhhhhHHHHHHHHHHHHc-CCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhcc--ccCCceEEEeecCCCCC
Q 007190 239 EEMFVGVGARRVRSLFQAAKK-KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF--EQNEGIILMAATNLPDI 315 (613)
Q Consensus 239 ~~~~~g~~~~~vr~lf~~A~~-~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~--~~~~~ViVIaaTN~p~~ 315 (613)
.. +..++...+. ..+-|||+|++. + ...+...+.|-..|||- ....+|++.+|+|+-+.
T Consensus 92 ~~---------l~~l~~~l~~~~~kFIlf~DDLs-F--------e~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHL 153 (249)
T PF05673_consen 92 GD---------LPELLDLLRDRPYKFILFCDDLS-F--------EEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHL 153 (249)
T ss_pred cc---------HHHHHHHHhcCCCCEEEEecCCC-C--------CCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhc
Confidence 44 3455555443 345799999864 2 12233445666666764 34678999999997644
Q ss_pred CChhh---------------------cCCCccceEEEccCCCHhhHHHHHHHHhccCCCCCh-hcH----HHHHhcCCCC
Q 007190 316 LDPAL---------------------TRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADD-VDV----KAIARGTPGF 369 (613)
Q Consensus 316 Ld~aL---------------------lRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d-~dl----~~la~~t~G~ 369 (613)
++... --..||..++.|.+|+.++-.+|++++++..++.-+ .++ ...|..-.|.
T Consensus 154 v~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~R 233 (249)
T PF05673_consen 154 VPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGGR 233 (249)
T ss_pred cchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCC
Confidence 43211 112389999999999999999999999987766543 222 2344555667
Q ss_pred CHHHHHHHHHH
Q 007190 370 NGADLANLVNI 380 (613)
Q Consensus 370 sgadL~~lv~~ 380 (613)
||+-..+.++.
T Consensus 234 SGRtA~QF~~~ 244 (249)
T PF05673_consen 234 SGRTARQFIDD 244 (249)
T ss_pred CHHHHHHHHHH
Confidence 78776666653
No 137
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.51 E-value=2.3e-13 Score=144.60 Aligned_cols=222 Identities=21% Similarity=0.238 Sum_probs=141.7
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcC-------CCeeEee--
Q 007190 164 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG-------VPFFYRA-- 234 (613)
Q Consensus 164 ~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~-------~pfi~is-- 234 (613)
+...|++|+|++++|..|...+ .+| ...|+||.||+|||||++||++++-+. .||..-.
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~---~~p---------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~ 79 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNV---IDP---------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSD 79 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhc---cCC---------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCC
Confidence 3457999999999998886543 233 224899999999999999999977552 3443000
Q ss_pred ----cchhhhh---------------h----hhhhHHH------HHHHHHHHH---------cCCCeEEEEcCCCccccC
Q 007190 235 ----GSEFEEM---------------F----VGVGARR------VRSLFQAAK---------KKAPCIIFIDEIDAVGST 276 (613)
Q Consensus 235 ----~s~~~~~---------------~----~g~~~~~------vr~lf~~A~---------~~~P~ILfIDEiD~l~~~ 276 (613)
++++... + .|.+..+ +...|.... +....+|||||++.+.
T Consensus 80 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~-- 157 (350)
T CHL00081 80 PELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD-- 157 (350)
T ss_pred hhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC--
Confidence 0000000 0 1111111 111111111 1113599999999993
Q ss_pred CccCCcccHHHHHHHHHHhhcc-----------ccCCceEEEeecCCCC-CCChhhcCCCccceEEEccCCC-HhhHHHH
Q 007190 277 RKQWEGHTKKTLHQLLVEMDGF-----------EQNEGIILMAATNLPD-ILDPALTRPGRFDRHIVVPNPD-VRGRQEI 343 (613)
Q Consensus 277 r~~~~~~~~~~l~~LL~~ldg~-----------~~~~~ViVIaaTN~p~-~Ld~aLlRpgRFd~~I~v~~Pd-~~~R~~I 343 (613)
..+...|+..|+.- ....++++|++.|..+ .+++++.. ||..++.+..|+ .+.+.+|
T Consensus 158 --------~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e~~i 227 (350)
T CHL00081 158 --------DHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELRVKI 227 (350)
T ss_pred --------HHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHHHHH
Confidence 34556677666431 1235688888888665 68999998 999999999997 5899999
Q ss_pred HHHHhccC--CC----------------------------CChhc---HHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC
Q 007190 344 LELYLQDK--PL----------------------------ADDVD---VKAIARGTPGFNGADLANLVNIAAIKAAVDGG 390 (613)
Q Consensus 344 L~~~l~~~--~l----------------------------~~d~d---l~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~ 390 (613)
++...... +. -++.. +..++..+.--|++--..+++.|...|+.+++
T Consensus 228 l~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR 307 (350)
T CHL00081 228 VEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFEGR 307 (350)
T ss_pred HHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHcCC
Confidence 98754211 00 00111 12233333323566666788889999999999
Q ss_pred CccCHHHHHHHHHHHhcCC
Q 007190 391 EKLTATELEFAKDRILMGT 409 (613)
Q Consensus 391 ~~It~~dl~~A~~~v~~g~ 409 (613)
+.|+.+|+..+..-++...
T Consensus 308 ~~V~pdDv~~~a~~vL~HR 326 (350)
T CHL00081 308 TEVTPKDIFKVITLCLRHR 326 (350)
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999988776543
No 138
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.51 E-value=1.2e-12 Score=135.53 Aligned_cols=99 Identities=19% Similarity=0.190 Sum_probs=79.4
Q ss_pred eEEEeecCC------------CCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCC
Q 007190 304 IILMAATNL------------PDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFN 370 (613)
Q Consensus 304 ViVIaaTN~------------p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~s 370 (613)
.++|.|||+ |..+|..|+. |+ ..|...+++.++.++|++..++...+. ++..++.|+.....-|
T Consensus 321 PIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etS 397 (450)
T COG1224 321 PIIILATNRGMTKIRGTDIESPHGIPLDLLD--RL-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETS 397 (450)
T ss_pred cEEEEEcCCceeeecccCCcCCCCCCHhhhh--he-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhh
Confidence 467777884 5677878876 66 577888899999999999999876655 4445788887776667
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 007190 371 GADLANLVNIAAIKAAVDGGEKLTATELEFAKDRI 405 (613)
Q Consensus 371 gadL~~lv~~Aa~~A~~~~~~~It~~dl~~A~~~v 405 (613)
-+=..+|+.-|...|.++++..|..+|+++|.+-.
T Consensus 398 LRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~lF 432 (450)
T COG1224 398 LRYAVQLLTPASIIAKRRGSKRVEVEDVERAKELF 432 (450)
T ss_pred HHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHHH
Confidence 77778888889999999999999999999997643
No 139
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.50 E-value=4.8e-13 Score=145.04 Aligned_cols=213 Identities=27% Similarity=0.324 Sum_probs=132.6
Q ss_pred cCCCHHHHHHHHHHHHH----hcCc-hhhhhcCC-CCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhh-hhh
Q 007190 171 VKGCDDAKQELVEVVEY----LKNP-SKFTRLGG-KLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE-MFV 243 (613)
Q Consensus 171 V~G~~e~k~~L~eiv~~----l~~p-~~~~~lg~-~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~-~~~ 243 (613)
|+|++++|+.+...+.. ++.. ......+. ..+.++||+||||||||++|+++|..++.||..++++.+.. .|+
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyv 158 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYV 158 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccc
Confidence 69999999999876621 2110 00000001 12358999999999999999999999999999999887653 466
Q ss_pred hhh-HHHHHHHHHHH----HcCCCeEEEEcCCCccccCCccCC----cccHHHHHHHHHHhhcccc-----------CCc
Q 007190 244 GVG-ARRVRSLFQAA----KKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFEQ-----------NEG 303 (613)
Q Consensus 244 g~~-~~~vr~lf~~A----~~~~P~ILfIDEiD~l~~~r~~~~----~~~~~~l~~LL~~ldg~~~-----------~~~ 303 (613)
|.. ...+..++..+ ....++||||||+|.+..+++..+ -....+++.||+.|+|... ..+
T Consensus 159 G~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~ 238 (413)
T TIGR00382 159 GEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQE 238 (413)
T ss_pred cccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCCC
Confidence 663 33344444322 234578999999999977543221 1123577788888876421 134
Q ss_pred eEEEeecCCC---------------------------C-----------------------CCChhhcCCCccceEEEcc
Q 007190 304 IILMAATNLP---------------------------D-----------------------ILDPALTRPGRFDRHIVVP 333 (613)
Q Consensus 304 ViVIaaTN~p---------------------------~-----------------------~Ld~aLlRpgRFd~~I~v~ 333 (613)
.++|.|+|-. + .+.|+++ ||+|..+.|.
T Consensus 239 ~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--gRld~Iv~f~ 316 (413)
T TIGR00382 239 FIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--GRLPVIATLE 316 (413)
T ss_pred eEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh--CCCCeEeecC
Confidence 6777777751 0 0224444 5999999999
Q ss_pred CCCHhhHHHHHHHH----hcc-------CCCC---ChhcHHHHHhc--CCCCCHHHHHHHHHHHHHHH
Q 007190 334 NPDVRGRQEILELY----LQD-------KPLA---DDVDVKAIARG--TPGFNGADLANLVNIAAIKA 385 (613)
Q Consensus 334 ~Pd~~~R~~IL~~~----l~~-------~~l~---~d~dl~~la~~--t~G~sgadL~~lv~~Aa~~A 385 (613)
+.+.++..+|+... +++ .+.. ++..++.|++. ...+-.+.|+.++++...-.
T Consensus 317 pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~ 384 (413)
T TIGR00382 317 KLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDV 384 (413)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHH
Confidence 99999999888653 211 1111 22235556654 23444566776666555443
No 140
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.48 E-value=7.3e-13 Score=153.64 Aligned_cols=166 Identities=22% Similarity=0.311 Sum_probs=118.2
Q ss_pred ccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhh-----hhhh
Q 007190 170 DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE-----MFVG 244 (613)
Q Consensus 170 dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~-----~~~g 244 (613)
.|+|++++++.+.+.+...+..-. . ..++...+||+||||||||.+|+++|..++.||+.++++++.+ .+.|
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~--~-~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG 535 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLG--H-EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhcccc--C-CCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcC
Confidence 379999999999998875432100 0 1123346999999999999999999999999999999998754 2333
Q ss_pred hhHHH-----HHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhcc--cc-------CCceEEEeec
Q 007190 245 VGARR-----VRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF--EQ-------NEGIILMAAT 310 (613)
Q Consensus 245 ~~~~~-----vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~--~~-------~~~ViVIaaT 310 (613)
..... -..+....+....|||||||||.+ ...+.+.|+..||.- .. -.++++|+||
T Consensus 536 ~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka----------~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~Ts 605 (758)
T PRK11034 536 APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA----------HPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTT 605 (758)
T ss_pred CCCCcccccccchHHHHHHhCCCcEEEeccHhhh----------hHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeC
Confidence 21111 112333345556689999999998 245677788777732 11 1467899999
Q ss_pred CCC-------------------------CCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhcc
Q 007190 311 NLP-------------------------DILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQD 350 (613)
Q Consensus 311 N~p-------------------------~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~ 350 (613)
|.- ..+.|.++. |+|.+|.|++.+.++..+|+..++.+
T Consensus 606 N~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~ 668 (758)
T PRK11034 606 NAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVE 668 (758)
T ss_pred CcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHH
Confidence 932 124567776 99999999999999999999887753
No 141
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.47 E-value=1.1e-12 Score=153.21 Aligned_cols=197 Identities=25% Similarity=0.344 Sum_probs=131.8
Q ss_pred cccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCc-eEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhh-----h
Q 007190 169 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPK-GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM-----F 242 (613)
Q Consensus 169 ~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~-gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~-----~ 242 (613)
+.|+|++++++.+.+.+...+..-. ....|. .+||+||||||||++|+++|..++.+++.++++++.+. .
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~----~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~l 529 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLG----NPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRL 529 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCC----CCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHH
Confidence 3578999999888887765322100 112344 48999999999999999999999999999999987552 2
Q ss_pred hhhh-----HHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccc---------cCCceEEEe
Q 007190 243 VGVG-----ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QNEGIILMA 308 (613)
Q Consensus 243 ~g~~-----~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~---------~~~~ViVIa 308 (613)
.|.. ......+....+....+||+|||+|.+ .....+.|++.||... .-.++++|+
T Consensus 530 ig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka----------~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~ 599 (731)
T TIGR02639 530 IGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA----------HPDIYNILLQVMDYATLTDNNGRKADFRNVILIM 599 (731)
T ss_pred hcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhc----------CHHHHHHHHHhhccCeeecCCCcccCCCCCEEEE
Confidence 2221 111223444455566789999999988 3457777887777421 123578899
Q ss_pred ecCCCC-------------------------CCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccC-------C--CC
Q 007190 309 ATNLPD-------------------------ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK-------P--LA 354 (613)
Q Consensus 309 aTN~p~-------------------------~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~-------~--l~ 354 (613)
|||... .+.|.++. |||.+|.|.+.+.++..+|++..+++. + +.
T Consensus 600 Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~ 677 (731)
T TIGR02639 600 TSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLE 677 (731)
T ss_pred CCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 998631 14566665 999999999999999999999887531 1 11
Q ss_pred -ChhcHHHHHhc--CCCCCHHHHHHHHHHH
Q 007190 355 -DDVDVKAIARG--TPGFNGADLANLVNIA 381 (613)
Q Consensus 355 -~d~dl~~la~~--t~G~sgadL~~lv~~A 381 (613)
++..++.|+.. .+.+-.+.|+.+++.-
T Consensus 678 i~~~a~~~La~~~~~~~~GaR~l~r~i~~~ 707 (731)
T TIGR02639 678 LTDDAKKYLAEKGYDEEFGARPLARVIQEE 707 (731)
T ss_pred eCHHHHHHHHHhCCCcccCchHHHHHHHHH
Confidence 22224445542 3334456666666543
No 142
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.47 E-value=1.9e-12 Score=138.36 Aligned_cols=189 Identities=18% Similarity=0.229 Sum_probs=129.1
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCC-------CeeEe---
Q 007190 164 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV-------PFFYR--- 233 (613)
Q Consensus 164 ~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~-------pfi~i--- 233 (613)
.+..|++|+|++++++.|...+. .++.|..+||+||+|+|||++|+.+|+.+.+ |....
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~-----------~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYR-----------EGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHH-----------cCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 34689999999999999988775 4678889999999999999999999998755 21100
Q ss_pred -ecchhhh--------------hh--------hhhhHHHHHHHHHHH----HcCCCeEEEEcCCCccccCCccCCcccHH
Q 007190 234 -AGSEFEE--------------MF--------VGVGARRVRSLFQAA----KKKAPCIIFIDEIDAVGSTRKQWEGHTKK 286 (613)
Q Consensus 234 -s~s~~~~--------------~~--------~g~~~~~vr~lf~~A----~~~~P~ILfIDEiD~l~~~r~~~~~~~~~ 286 (613)
+|..+.. .+ ...+...+|.+-+.. ......|++|||+|.+ ...
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l----------~~~ 156 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM----------NRN 156 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc----------CHH
Confidence 1111100 00 001123344333322 2334569999999999 456
Q ss_pred HHHHHHHHhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcC
Q 007190 287 TLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGT 366 (613)
Q Consensus 287 ~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t 366 (613)
..|.||..++. +..+.++|..|+.|+.+.|.+++ |+ ..+.+++|+.++..++++....... .++..+..+++.+
T Consensus 157 aanaLLk~LEE--pp~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~-~~~~~~~~i~~~s 230 (351)
T PRK09112 157 AANAILKTLEE--PPARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQG-SDGEITEALLQRS 230 (351)
T ss_pred HHHHHHHHHhc--CCCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccC-CCHHHHHHHHHHc
Confidence 78889999986 33445555667888888899987 88 6999999999999999987543322 2233366677766
Q ss_pred CCCCHHHHHHHHHH
Q 007190 367 PGFNGADLANLVNI 380 (613)
Q Consensus 367 ~G~sgadL~~lv~~ 380 (613)
.| +++...++++.
T Consensus 231 ~G-~pr~Al~ll~~ 243 (351)
T PRK09112 231 KG-SVRKALLLLNY 243 (351)
T ss_pred CC-CHHHHHHHHhc
Confidence 65 56555555543
No 143
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.47 E-value=1.2e-12 Score=139.08 Aligned_cols=215 Identities=23% Similarity=0.272 Sum_probs=138.1
Q ss_pred CCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc-------CCCee--------
Q 007190 167 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-------GVPFF-------- 231 (613)
Q Consensus 167 ~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~-------~~pfi-------- 231 (613)
-|..|+|++++|..|.-.+ -+|. ..+++|.|+||||||++++++++-. +.|+-
T Consensus 2 pf~~ivgq~~~~~al~~~~---~~~~---------~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNV---IDPK---------IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHHHh---cCCC---------CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 3889999999988774322 2221 2479999999999999999999866 33332
Q ss_pred -Eeecch----------------hhhhhhhhhHHHH------H------------HHHHHHHcCCCeEEEEcCCCccccC
Q 007190 232 -YRAGSE----------------FEEMFVGVGARRV------R------------SLFQAAKKKAPCIIFIDEIDAVGST 276 (613)
Q Consensus 232 -~is~s~----------------~~~~~~g~~~~~v------r------------~lf~~A~~~~P~ILfIDEiD~l~~~ 276 (613)
.-+|.. |.+.-.|....++ . .++.+| ...+|||||++.+
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A---~~GvL~lDEi~~L--- 143 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARA---NRGILYIDEVNLL--- 143 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceec---cCCEEEecChHhC---
Confidence 000110 0010000111111 1 122222 2359999999998
Q ss_pred CccCCcccHHHHHHHHHHhhcc-----------ccCCceEEEeecCCCC-CCChhhcCCCccceEEEccCCCH-hhHHHH
Q 007190 277 RKQWEGHTKKTLHQLLVEMDGF-----------EQNEGIILMAATNLPD-ILDPALTRPGRFDRHIVVPNPDV-RGRQEI 343 (613)
Q Consensus 277 r~~~~~~~~~~l~~LL~~ldg~-----------~~~~~ViVIaaTN~p~-~Ld~aLlRpgRFd~~I~v~~Pd~-~~R~~I 343 (613)
...++..|+..|+.- ....++++|+++|..+ .++++++. ||..++.++.|+. ++|.+|
T Consensus 144 -------~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~eI 214 (337)
T TIGR02030 144 -------EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVEI 214 (337)
T ss_pred -------CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHHH
Confidence 234566666666431 1234688899988655 68999998 9999999999976 888999
Q ss_pred HHHHhccC--C------C----------------------CChhc---HHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC
Q 007190 344 LELYLQDK--P------L----------------------ADDVD---VKAIARGTPGFNGADLANLVNIAAIKAAVDGG 390 (613)
Q Consensus 344 L~~~l~~~--~------l----------------------~~d~d---l~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~ 390 (613)
++...... + . -++.- +..++..+..-|.+.-..+++.|...|+.+++
T Consensus 215 L~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR 294 (337)
T TIGR02030 215 VERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEGR 294 (337)
T ss_pred HHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcCC
Confidence 98743210 0 0 01111 22333344333567777888999999999999
Q ss_pred CccCHHHHHHHHHHHhcC
Q 007190 391 EKLTATELEFAKDRILMG 408 (613)
Q Consensus 391 ~~It~~dl~~A~~~v~~g 408 (613)
+.|+.+|+..+..-++..
T Consensus 295 ~~V~~dDv~~~a~~vL~H 312 (337)
T TIGR02030 295 TEVTVDDIRRVAVLALRH 312 (337)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999988777654
No 144
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.44 E-value=2.8e-12 Score=137.85 Aligned_cols=185 Identities=18% Similarity=0.182 Sum_probs=127.9
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCe-------e-----
Q 007190 164 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPF-------F----- 231 (613)
Q Consensus 164 ~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pf-------i----- 231 (613)
.+.+|++|+|++++++.|.+.+. .++.|..+||+||+|+||+++|.++|+.+-+.- .
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~-----------~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~ 82 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYR-----------SGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTS 82 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccc
Confidence 45689999999999999998775 367888999999999999999999999763210 0
Q ss_pred ---Eeecc-----------hhh-------hhh----hhhhHHHHHHHHHHHH----cCCCeEEEEcCCCccccCCccCCc
Q 007190 232 ---YRAGS-----------EFE-------EMF----VGVGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWEG 282 (613)
Q Consensus 232 ---~is~s-----------~~~-------~~~----~g~~~~~vr~lf~~A~----~~~P~ILfIDEiD~l~~~r~~~~~ 282 (613)
.-.|. ++. ++- .......+|++-..+. ...|.|++|||+|.+
T Consensus 83 l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m--------- 153 (365)
T PRK07471 83 LAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM--------- 153 (365)
T ss_pred ccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc---------
Confidence 00011 110 000 0011234555554432 345789999999998
Q ss_pred ccHHHHHHHHHHhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHH
Q 007190 283 HTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAI 362 (613)
Q Consensus 283 ~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~l 362 (613)
.....|.||+.++. +..+.++|.+|+.++.+.+.+++ |+ ..+.|++|+.++-.+++...... ..+..+..+
T Consensus 154 -~~~aanaLLK~LEe--pp~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~---~~~~~~~~l 224 (365)
T PRK07471 154 -NANAANALLKVLEE--PPARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPD---LPDDPRAAL 224 (365)
T ss_pred -CHHHHHHHHHHHhc--CCCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhccc---CCHHHHHHH
Confidence 45788899999984 44556777788999999888877 87 68899999999999988876422 122223566
Q ss_pred HhcCCCCCHHHHHHHH
Q 007190 363 ARGTPGFNGADLANLV 378 (613)
Q Consensus 363 a~~t~G~sgadL~~lv 378 (613)
++.+.| ++....+++
T Consensus 225 ~~~s~G-sp~~Al~ll 239 (365)
T PRK07471 225 AALAEG-SVGRALRLA 239 (365)
T ss_pred HHHcCC-CHHHHHHHh
Confidence 666665 454444443
No 145
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.44 E-value=2.4e-12 Score=117.28 Aligned_cols=121 Identities=44% Similarity=0.649 Sum_probs=84.0
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhhhhhhhHHH---HHHHHHHHHcCCCeEEEEcCCCccc
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGVGARR---VRSLFQAAKKKAPCIIFIDEIDAVG 274 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~~~g~~~~~---vr~lf~~A~~~~P~ILfIDEiD~l~ 274 (613)
.+++++++||||||||++++.+++.+ +.+++++++.++........... ....+.......+.+|+|||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 34589999999999999999999998 89999999887655433222111 1223334445668899999999872
Q ss_pred cCCccCCcccHHHHHHHHHHhhcccc----CCceEEEeecCCCC--CCChhhcCCCccceEEEcc
Q 007190 275 STRKQWEGHTKKTLHQLLVEMDGFEQ----NEGIILMAATNLPD--ILDPALTRPGRFDRHIVVP 333 (613)
Q Consensus 275 ~~r~~~~~~~~~~l~~LL~~ldg~~~----~~~ViVIaaTN~p~--~Ld~aLlRpgRFd~~I~v~ 333 (613)
. .....++..+..+.. ..++.+|+++|.+. .+++.+.. ||+.++.++
T Consensus 98 ~----------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 98 R----------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred H----------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 1 222334444443322 46788888998876 67777777 998777776
No 146
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.43 E-value=2.2e-12 Score=148.15 Aligned_cols=214 Identities=25% Similarity=0.318 Sum_probs=141.1
Q ss_pred CCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc--------------------
Q 007190 167 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-------------------- 226 (613)
Q Consensus 167 ~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~-------------------- 226 (613)
-|.+|+|++.+|..|.-.. .+|. ..+|||+||||||||++|++++.-+
T Consensus 2 pf~~ivGq~~~~~al~~~a---v~~~---------~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNA---VDPR---------IGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHHh---hCCC---------CCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 3889999999987775433 2221 1379999999999999999999876
Q ss_pred ---------------CCCeeEeecchhhhhhhhhh--HHHH--------HHHHHHHHcCCCeEEEEcCCCccccCCccCC
Q 007190 227 ---------------GVPFFYRAGSEFEEMFVGVG--ARRV--------RSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE 281 (613)
Q Consensus 227 ---------------~~pfi~is~s~~~~~~~g~~--~~~v--------r~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~ 281 (613)
..||+.+.++.......|.. .+.+ ..++..|. ..|||||||+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~---~GiL~lDEi~~l-------- 138 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAH---RGILYIDEVNLL-------- 138 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecC---CCeEEeChhhhC--------
Confidence 35677666554333333321 0000 11121221 249999999999
Q ss_pred cccHHHHHHHHHHhhcc-----------ccCCceEEEeecCCC-CCCChhhcCCCccceEEEccCCC-HhhHHHHHHHHh
Q 007190 282 GHTKKTLHQLLVEMDGF-----------EQNEGIILMAATNLP-DILDPALTRPGRFDRHIVVPNPD-VRGRQEILELYL 348 (613)
Q Consensus 282 ~~~~~~l~~LL~~ldg~-----------~~~~~ViVIaaTN~p-~~Ld~aLlRpgRFd~~I~v~~Pd-~~~R~~IL~~~l 348 (613)
...+++.|+..|+.- .....+++|+|+|.. ..+.++|+. ||+.+|.++.|. .+++.++++..+
T Consensus 139 --~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~~ 214 (633)
T TIGR02442 139 --DDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRRL 214 (633)
T ss_pred --CHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHHH
Confidence 345677777777521 112458999999854 368889998 999999998774 577777776543
Q ss_pred ccC-------------------------------CCCChhcHHHHHhcC--CCC-CHHHHHHHHHHHHHHHHHhCCCccC
Q 007190 349 QDK-------------------------------PLADDVDVKAIARGT--PGF-NGADLANLVNIAAIKAAVDGGEKLT 394 (613)
Q Consensus 349 ~~~-------------------------------~l~~d~dl~~la~~t--~G~-sgadL~~lv~~Aa~~A~~~~~~~It 394 (613)
... .+ ++..+..++..+ -|. +.+....+++.|...|+.++++.|+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~i-s~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~ 293 (633)
T TIGR02442 215 AFDADPEAFAARWAAEQEELRNRIARARSLLPSVRI-SDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVT 293 (633)
T ss_pred hhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCC
Confidence 210 00 111122222221 133 3555667888888999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 007190 395 ATELEFAKDRILMG 408 (613)
Q Consensus 395 ~~dl~~A~~~v~~g 408 (613)
.+|+..|..-++..
T Consensus 294 ~~Dv~~A~~lvL~h 307 (633)
T TIGR02442 294 AEDVREAAELVLPH 307 (633)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999888743
No 147
>PRK09087 hypothetical protein; Validated
Probab=99.42 E-value=2.4e-12 Score=129.75 Aligned_cols=171 Identities=19% Similarity=0.189 Sum_probs=117.7
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcc
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGH 283 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~ 283 (613)
.++|+||+|+|||+|+++++...++. +++..++...+. ..... .+|+|||+|.+..
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~~~~-----------~~~~~---~~l~iDDi~~~~~-------- 101 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGSDAA-----------NAAAE---GPVLIEDIDAGGF-------- 101 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcchHHH-----------Hhhhc---CeEEEECCCCCCC--------
Confidence 49999999999999999999887654 444444333221 11111 3799999998721
Q ss_pred cHHHHHHHHHHhhccccCCceEEEeecCCCCC---CChhhcCCCccc--eEEEccCCCHhhHHHHHHHHhccCCCC-Chh
Q 007190 284 TKKTLHQLLVEMDGFEQNEGIILMAATNLPDI---LDPALTRPGRFD--RHIVVPNPDVRGRQEILELYLQDKPLA-DDV 357 (613)
Q Consensus 284 ~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~---Ld~aLlRpgRFd--~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~ 357 (613)
.+.. |+..++....+...+||+++..|.. ..+.|++ ||. ..+.+.+|+.+.|..|++.+++...+. ++.
T Consensus 102 ~~~~---lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~e 176 (226)
T PRK09087 102 DETG---LFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPH 176 (226)
T ss_pred CHHH---HHHHHHHHHhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 1222 3444443334455677777666643 3677887 886 588999999999999999999876554 444
Q ss_pred cHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 007190 358 DVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRI 405 (613)
Q Consensus 358 dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A~~~v 405 (613)
.+..|++...+ +.+.+..+++.....+.. .++.||...+++++..+
T Consensus 177 v~~~La~~~~r-~~~~l~~~l~~L~~~~~~-~~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 177 VVYYLVSRMER-SLFAAQTIVDRLDRLALE-RKSRITRALAAEVLNEM 222 (226)
T ss_pred HHHHHHHHhhh-hHHHHHHHHHHHHHHHHH-hCCCCCHHHHHHHHHhh
Confidence 57888888774 677777777766544444 34679999998887653
No 148
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.42 E-value=2.3e-12 Score=135.07 Aligned_cols=139 Identities=17% Similarity=0.156 Sum_probs=99.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhh--hhhhhHH----------HHHHHHHHHHcCCCeEEEEcC
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM--FVGVGAR----------RVRSLFQAAKKKAPCIIFIDE 269 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~--~~g~~~~----------~vr~lf~~A~~~~P~ILfIDE 269 (613)
.+++||.||||||||++++.+|.+++.|++.++++..... +.|...- -....+..|.. .+++|++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 3579999999999999999999999999999988765443 3333110 01123344443 358999999
Q ss_pred CCccccCCccCCcccHHHHHHHHHH-----hh----ccccCCceEEEeecCCCC------------CCChhhcCCCccce
Q 007190 270 IDAVGSTRKQWEGHTKKTLHQLLVE-----MD----GFEQNEGIILMAATNLPD------------ILDPALTRPGRFDR 328 (613)
Q Consensus 270 iD~l~~~r~~~~~~~~~~l~~LL~~-----ld----g~~~~~~ViVIaaTN~p~------------~Ld~aLlRpgRFd~ 328 (613)
+|..-+ .....++.+|.. +. .+.....+.||+|+|..+ .+++|++. ||-.
T Consensus 143 in~a~p-------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD--RF~i 213 (327)
T TIGR01650 143 YDAGRP-------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD--RWSI 213 (327)
T ss_pred hhccCH-------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--heee
Confidence 998822 233445555542 11 122445789999999854 46889998 9988
Q ss_pred EEEccCCCHhhHHHHHHHHhcc
Q 007190 329 HIVVPNPDVRGRQEILELYLQD 350 (613)
Q Consensus 329 ~I~v~~Pd~~~R~~IL~~~l~~ 350 (613)
.+.++.|+.+.-.+|+......
T Consensus 214 ~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 214 VTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred EeeCCCCCHHHHHHHHHhhccC
Confidence 8899999999999999876543
No 149
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.42 E-value=6.9e-13 Score=144.55 Aligned_cols=206 Identities=26% Similarity=0.380 Sum_probs=134.8
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhh
Q 007190 165 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM 241 (613)
Q Consensus 165 ~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~ 241 (613)
..+|+||+|..++..++.+.+... .+.+-.|||.|.+||||.++|+++.+.. +.||+.+||..+.+.
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr~----------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~ 310 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKRI----------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPET 310 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHhh----------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHH
Confidence 458999999999988888777543 3445589999999999999999998855 689999999876443
Q ss_pred -------------hhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhc-----c----c
Q 007190 242 -------------FVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDG-----F----E 299 (613)
Q Consensus 242 -------------~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg-----~----~ 299 (613)
|.|....--..+|+.|..+ .||+|||..+ .......||..++. . .
T Consensus 311 LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgem----------pl~LQaKLLRVLQEkei~rvG~t~~ 377 (560)
T COG3829 311 LLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEM----------PLPLQAKLLRVLQEKEIERVGGTKP 377 (560)
T ss_pred HHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccC----------CHHHHHHHHHHHhhceEEecCCCCc
Confidence 2222222244566666555 8999999988 23344455555442 1 1
Q ss_pred cCCceEEEeecCCCCCCChhhcCCCccce-------EEEccCCCHhhHHH----HHHHHhcc----CCCC----ChhcHH
Q 007190 300 QNEGIILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGRQE----ILELYLQD----KPLA----DDVDVK 360 (613)
Q Consensus 300 ~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~-------~I~v~~Pd~~~R~~----IL~~~l~~----~~l~----~d~dl~ 360 (613)
...+|.||+|||+. |-.++. .|+|.. ++.+..|...+|.+ +..+++.+ .+.. ++..+.
T Consensus 378 ~~vDVRIIAATN~n--L~~~i~-~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~ 454 (560)
T COG3829 378 IPVDVRIIAATNRN--LEKMIA-EGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALA 454 (560)
T ss_pred eeeEEEEEeccCcC--HHHHHh-cCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHH
Confidence 23469999999974 333333 367654 67778888888865 23333332 1111 122233
Q ss_pred HHHhc-CCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 007190 361 AIARG-TPGFNGADLANLVNIAAIKAAVDGGEKLTATELE 399 (613)
Q Consensus 361 ~la~~-t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~ 399 (613)
.|.+. -+| +-++|+|++.++...+ .....|+.+|+.
T Consensus 455 ~L~~y~WPG-NVRELeNviER~v~~~--~~~~~I~~~~lp 491 (560)
T COG3829 455 LLLRYDWPG-NVRELENVIERAVNLV--ESDGLIDADDLP 491 (560)
T ss_pred HHHhCCCCc-hHHHHHHHHHHHHhcc--CCcceeehhhcc
Confidence 34333 333 6688999998887633 344458888776
No 150
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.40 E-value=5.2e-12 Score=130.40 Aligned_cols=214 Identities=21% Similarity=0.345 Sum_probs=138.4
Q ss_pred CCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc---------CCCeeEeecchh---h
Q 007190 172 KGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---------GVPFFYRAGSEF---E 239 (613)
Q Consensus 172 ~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~---------~~pfi~is~s~~---~ 239 (613)
+|+..+++.|..+.+.+..|.. .++| ++||+|++|.|||++++.++... .+|++++....- .
T Consensus 37 IgY~~A~~~L~~L~~Ll~~P~~-----~Rmp-~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~ 110 (302)
T PF05621_consen 37 IGYPRAKEALDRLEELLEYPKR-----HRMP-NLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDER 110 (302)
T ss_pred ecCHHHHHHHHHHHHHHhCCcc-----cCCC-ceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChH
Confidence 9999999999999998998865 4556 79999999999999999998744 257777764221 1
Q ss_pred hhh------hhh-------hHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEE
Q 007190 240 EMF------VGV-------GARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIIL 306 (613)
Q Consensus 240 ~~~------~g~-------~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViV 306 (613)
.-| .|. ..+.-..+....+...+.+|+|||++.+...... .++.+-.+|+.+- -.-+-.++.
T Consensus 111 ~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~----~qr~~Ln~LK~L~-NeL~ipiV~ 185 (302)
T PF05621_consen 111 RFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYR----KQREFLNALKFLG-NELQIPIVG 185 (302)
T ss_pred HHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHH----HHHHHHHHHHHHh-hccCCCeEE
Confidence 111 011 1122333445556677889999999997543211 1222222222221 122344555
Q ss_pred EeecCCCC--CCChhhcCCCccceEEEccCC-CHhhHHHHHHHHhccCCCCCh--h---c-HHHHHhcCCCCCHHHHHHH
Q 007190 307 MAATNLPD--ILDPALTRPGRFDRHIVVPNP-DVRGRQEILELYLQDKPLADD--V---D-VKAIARGTPGFNGADLANL 377 (613)
Q Consensus 307 IaaTN~p~--~Ld~aLlRpgRFd~~I~v~~P-d~~~R~~IL~~~l~~~~l~~d--~---d-l~~la~~t~G~sgadL~~l 377 (613)
+|+..-.. .-|+.+.+ ||+ .+.+|.- ..++...++..+-...++... . + ...|-..+.|..| ++.++
T Consensus 186 vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG-~l~~l 261 (302)
T PF05621_consen 186 VGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG-ELSRL 261 (302)
T ss_pred eccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH-HHHHH
Confidence 65543222 23677777 995 4455543 334556677777665554422 2 2 2456677887554 89999
Q ss_pred HHHHHHHHHHhCCCccCHHHHHH
Q 007190 378 VNIAAIKAAVDGGEKLTATELEF 400 (613)
Q Consensus 378 v~~Aa~~A~~~~~~~It~~dl~~ 400 (613)
++.|+..|.+.|.+.||.+.++.
T Consensus 262 l~~aA~~AI~sG~E~It~~~l~~ 284 (302)
T PF05621_consen 262 LNAAAIAAIRSGEERITREILDK 284 (302)
T ss_pred HHHHHHHHHhcCCceecHHHHhh
Confidence 99999999999999999998875
No 151
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.39 E-value=6.5e-12 Score=132.55 Aligned_cols=169 Identities=14% Similarity=0.261 Sum_probs=120.6
Q ss_pred CCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCC--------eeEeecchh
Q 007190 167 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP--------FFYRAGSEF 238 (613)
Q Consensus 167 ~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~p--------fi~is~s~~ 238 (613)
+|+||+|++.+++.|...+. .++.|+..||+||+|+|||++|+++|+.+.+. ++.+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~-----------~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~- 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSII-----------KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN- 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHH-----------cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc-
Confidence 69999999999999988774 36778889999999999999999999976432 22222110
Q ss_pred hhhhhhhhHHHHHHHHHHHH----cCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCC
Q 007190 239 EEMFVGVGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD 314 (613)
Q Consensus 239 ~~~~~g~~~~~vr~lf~~A~----~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~ 314 (613)
.. ..+...++++.+.+. .....|++||++|.+ .....|.||..++. +..++++|.+|+.++
T Consensus 70 -~~--~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m----------~~~a~naLLK~LEe--pp~~t~~il~~~~~~ 134 (313)
T PRK05564 70 -KK--SIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM----------TEQAQNAFLKTIEE--PPKGVFIILLCENLE 134 (313)
T ss_pred -CC--CCCHHHHHHHHHHHhcCcccCCceEEEEechhhc----------CHHHHHHHHHHhcC--CCCCeEEEEEeCChH
Confidence 00 112234666555432 233469999999988 35678899999994 455666666677889
Q ss_pred CCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCC
Q 007190 315 ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPG 368 (613)
Q Consensus 315 ~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G 368 (613)
.+.|.+++ |+ ..+.|++|+.++....++..+.. . ++..+..++..+.|
T Consensus 135 ~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~--~-~~~~~~~l~~~~~g 182 (313)
T PRK05564 135 QILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYND--I-KEEEKKSAIAFSDG 182 (313)
T ss_pred hCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcC--C-CHHHHHHHHHHcCC
Confidence 99999988 88 68999999999888877765532 1 23345556666655
No 152
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.39 E-value=7.6e-12 Score=123.08 Aligned_cols=213 Identities=18% Similarity=0.228 Sum_probs=135.9
Q ss_pred ccccccCCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCC-----C
Q 007190 155 LNKEVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV-----P 229 (613)
Q Consensus 155 ~~~~~~~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~-----p 229 (613)
...+|++.+.+..+.||+|+++..+.|+-+.. .+..| +++|.||||||||+-+.++|+++=. -
T Consensus 13 ~~l~wVeKYrP~~l~dIVGNe~tv~rl~via~-----------~gnmP-~liisGpPG~GKTTsi~~LAr~LLG~~~ke~ 80 (333)
T KOG0991|consen 13 YQLPWVEKYRPSVLQDIVGNEDTVERLSVIAK-----------EGNMP-NLIISGPPGTGKTTSILCLARELLGDSYKEA 80 (333)
T ss_pred ccchHHHhhCchHHHHhhCCHHHHHHHHHHHH-----------cCCCC-ceEeeCCCCCchhhHHHHHHHHHhChhhhhH
Confidence 34457888889999999999999998877765 35566 7999999999999999999998733 3
Q ss_pred eeEeecchhhhhhhhhhHHHHHHHHHHHHcC----CCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceE
Q 007190 230 FFYRAGSEFEEMFVGVGARRVRSLFQAAKKK----APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGII 305 (613)
Q Consensus 230 fi~is~s~~~~~~~g~~~~~vr~lf~~A~~~----~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~Vi 305 (613)
++++++|+-..- .....+ -..|.+-+-. .-.||++||.|++.. .....|-+.|+-+.... .
T Consensus 81 vLELNASdeRGI--DvVRn~-IK~FAQ~kv~lp~grhKIiILDEADSMT~----------gAQQAlRRtMEiyS~tt--R 145 (333)
T KOG0991|consen 81 VLELNASDERGI--DVVRNK-IKMFAQKKVTLPPGRHKIIILDEADSMTA----------GAQQALRRTMEIYSNTT--R 145 (333)
T ss_pred hhhccCcccccc--HHHHHH-HHHHHHhhccCCCCceeEEEeeccchhhh----------HHHHHHHHHHHHHcccc--h
Confidence 567777763321 111122 2345544322 224999999999932 23344555566544443 4
Q ss_pred EEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 007190 306 LMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIK 384 (613)
Q Consensus 306 VIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~lv~~Aa~~ 384 (613)
+..+||..+.+-..+.+ |+ -.+.+...+..+...-|....+...+. .+..++.+.-..+| |.++.+|.. .
T Consensus 146 FalaCN~s~KIiEPIQS--RC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~G----DMRQalNnL--Q 216 (333)
T KOG0991|consen 146 FALACNQSEKIIEPIQS--RC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQG----DMRQALNNL--Q 216 (333)
T ss_pred hhhhhcchhhhhhhHHh--hh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccc----hHHHHHHHH--H
Confidence 55678887777666665 55 234444445555444444444444443 23336666554444 777777753 4
Q ss_pred HHHhCCCccCHHHHHHHHH
Q 007190 385 AAVDGGEKLTATELEFAKD 403 (613)
Q Consensus 385 A~~~~~~~It~~dl~~A~~ 403 (613)
+...+-..|+.+.+-..++
T Consensus 217 st~~g~g~Vn~enVfKv~d 235 (333)
T KOG0991|consen 217 STVNGFGLVNQENVFKVCD 235 (333)
T ss_pred HHhccccccchhhhhhccC
Confidence 5566777788877765544
No 153
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=1.4e-11 Score=140.82 Aligned_cols=203 Identities=20% Similarity=0.293 Sum_probs=141.7
Q ss_pred CCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc----------CCCeeE
Q 007190 163 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFY 232 (613)
Q Consensus 163 ~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~----------~~pfi~ 232 (613)
.....++-|+|.++....+.+++. .+...+-+|.|+||+|||.++..+|.+. +..++.
T Consensus 164 Ar~gklDPvIGRd~EI~r~iqIL~------------RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s 231 (786)
T COG0542 164 AREGKLDPVIGRDEEIRRTIQILS------------RRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS 231 (786)
T ss_pred HhcCCCCCCcChHHHHHHHHHHHh------------ccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE
Confidence 344579999999987666666553 2233467999999999999999999865 344777
Q ss_pred eecchhhh--hhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCC--cccHHHHHHHHHHhhccccCCceEEEe
Q 007190 233 RAGSEFEE--MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE--GHTKKTLHQLLVEMDGFEQNEGIILMA 308 (613)
Q Consensus 233 is~s~~~~--~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~--~~~~~~l~~LL~~ldg~~~~~~ViVIa 308 (613)
++.+.++. +|.|+.+.+++.+.+..++..+.||||||||.+.+.....+ ....+.+...| .+..+-+||
T Consensus 232 LD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL-------ARGeL~~IG 304 (786)
T COG0542 232 LDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPAL-------ARGELRCIG 304 (786)
T ss_pred ecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHH-------hcCCeEEEE
Confidence 77777754 68999999999999999988899999999999976654322 12233333333 356688999
Q ss_pred ecCCCC-----CCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-----ChhcHHHHHhcC-----CCCCHHH
Q 007190 309 ATNLPD-----ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-----DDVDVKAIARGT-----PGFNGAD 373 (613)
Q Consensus 309 aTN~p~-----~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-----~d~dl~~la~~t-----~G~sgad 373 (613)
||...+ .-|+||.| || ..|.+..|+.++-..||+..-...... .|..+...+..+ .-|-|.-
T Consensus 305 ATT~~EYRk~iEKD~AL~R--RF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDK 381 (786)
T COG0542 305 ATTLDEYRKYIEKDAALER--RF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDK 381 (786)
T ss_pred eccHHHHHHHhhhchHHHh--cC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCch
Confidence 997543 34899999 99 688999999999999998765443222 222233322222 2233444
Q ss_pred HHHHHHHHHHHHHH
Q 007190 374 LANLVNIAAIKAAV 387 (613)
Q Consensus 374 L~~lv~~Aa~~A~~ 387 (613)
-..++.+|+.....
T Consensus 382 AIDLiDeA~a~~~l 395 (786)
T COG0542 382 AIDLLDEAGARVRL 395 (786)
T ss_pred HHHHHHHHHHHHHh
Confidence 45666666655443
No 154
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.37 E-value=4.1e-12 Score=142.33 Aligned_cols=208 Identities=24% Similarity=0.305 Sum_probs=128.4
Q ss_pred CCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHh-----------cCCCeeEee
Q 007190 166 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGE-----------AGVPFFYRA 234 (613)
Q Consensus 166 ~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e-----------~~~pfi~is 234 (613)
.+|++++|.+.+.+.+.+.+..+.. .+.+|||+|++||||+++|+++... .+.||+.++
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~----------s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYAR----------SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhC----------CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 4699999999999999888764332 2337999999999999999999887 467999999
Q ss_pred cchhhhhhh-----hh------hH--HHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccc--
Q 007190 235 GSEFEEMFV-----GV------GA--RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE-- 299 (613)
Q Consensus 235 ~s~~~~~~~-----g~------~~--~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~-- 299 (613)
|+.+.+... |. ++ ..-..+|+.|.. ..||||||+.|. ......|+..++.-.
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp----------~~~Q~kLl~~L~e~~~~ 352 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG---GTLFLDEIGEMP----------LPLQTRLLRVLEEKEVT 352 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccCC---CEEEEcChHhCC----------HHHHHHHHhhhhcCeEE
Confidence 987643211 11 00 011235555543 389999999992 344555665554311
Q ss_pred -------cCCceEEEeecCCCCCCChhhcCCCccce-------EEEccCCCHhhHHH----HHHHHhcc----CCCCChh
Q 007190 300 -------QNEGIILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGRQE----ILELYLQD----KPLADDV 357 (613)
Q Consensus 300 -------~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~-------~I~v~~Pd~~~R~~----IL~~~l~~----~~l~~d~ 357 (613)
...++.+|++||.. +. .+...|+|.. .+.+..|...+|.+ ++++++++ ....-..
T Consensus 353 r~G~~~~~~~dvRiIaat~~~--L~-~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~ 429 (538)
T PRK15424 353 RVGGHQPVPVDVRVISATHCD--LE-EDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSA 429 (538)
T ss_pred ecCCCceeccceEEEEecCCC--HH-HHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCH
Confidence 12346899999864 22 2223345542 45677777777754 45556543 2211111
Q ss_pred c-H-------HHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 007190 358 D-V-------KAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELE 399 (613)
Q Consensus 358 d-l-------~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~ 399 (613)
+ + ..|....---+-++|+|++++++..+.......|+.+++.
T Consensus 430 ~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~~~~~~~i~~~~l~ 479 (538)
T PRK15424 430 ALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVEPTPDLTPQFLQ 479 (538)
T ss_pred HHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcCCCCcCccCHHHhh
Confidence 1 1 2232222222568899999888876433333567777664
No 155
>PHA02244 ATPase-like protein
Probab=99.36 E-value=2.6e-11 Score=128.71 Aligned_cols=119 Identities=25% Similarity=0.351 Sum_probs=79.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhhh--hh---hhHHHHHHHHHHHHcCCCeEEEEcCCCccccCC
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMF--VG---VGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTR 277 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~~--~g---~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r 277 (613)
.++||+||||||||++|+++|..++.||+.++.. ...+ .| ....-...-|-.|.. .+.+|+|||++.+.
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l--~d~~~L~G~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a~--- 193 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI--MDEFELKGFIDANGKFHETPFYEAFK-KGGLFFIDEIDASI--- 193 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC--hHHHhhcccccccccccchHHHHHhh-cCCEEEEeCcCcCC---
Confidence 3599999999999999999999999999998843 1111 11 100111112222222 34699999999883
Q ss_pred ccCCcccHHHHHHHHHHhhc---------cccCCceEEEeecCCC-----------CCCChhhcCCCccceEEEccCCCH
Q 007190 278 KQWEGHTKKTLHQLLVEMDG---------FEQNEGIILMAATNLP-----------DILDPALTRPGRFDRHIVVPNPDV 337 (613)
Q Consensus 278 ~~~~~~~~~~l~~LL~~ldg---------~~~~~~ViVIaaTN~p-----------~~Ld~aLlRpgRFd~~I~v~~Pd~ 337 (613)
..++..|...++. +....++.+|+|+|.+ ..|+++++. || ..|.++.|+.
T Consensus 194 -------p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RF-v~I~~dyp~~ 263 (383)
T PHA02244 194 -------PEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RF-APIEFDYDEK 263 (383)
T ss_pred -------HHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hc-EEeeCCCCcH
Confidence 2333333333331 1234678999999973 567999998 99 5799999983
No 156
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.36 E-value=2.2e-11 Score=135.66 Aligned_cols=214 Identities=22% Similarity=0.283 Sum_probs=140.3
Q ss_pred cccCCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhh----hc------------------CCCCC-ceEEEEccCCCh
Q 007190 158 EVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFT----RL------------------GGKLP-KGILLTGAPGTG 214 (613)
Q Consensus 158 ~~~~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~----~l------------------g~~~p-~gvLL~GPpGTG 214 (613)
.|+.+..+..|.|+.|.+.+-..+..++.. .+|-.|. ++ ..+|| |-+|||||||-|
T Consensus 260 LWVdky~Pk~FtdLLsDe~tNR~~L~WLK~-WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlG 338 (877)
T KOG1969|consen 260 LWVDKYRPKKFTDLLSDEKTNRRMLGWLKQ-WDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLG 338 (877)
T ss_pred eeecccChhHHHHHhcchhHHHHHHHHHHh-hcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCC
Confidence 577888889999999999886655444432 1222232 11 11222 678999999999
Q ss_pred HHHHHHHHHHhcCCCeeEeecchhhhhhhhhhHHHHHHHHHHH----HcCCCeEEEEcCCCccccCCccCCcccHHHHHH
Q 007190 215 KTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAA----KKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQ 290 (613)
Q Consensus 215 KT~LAralA~e~~~pfi~is~s~~~~~~~g~~~~~vr~lf~~A----~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~ 290 (613)
||+||+.+|+.+|..++.|++|+-... .....++..+...- ....|..|+|||||--. ...++.
T Consensus 339 KTTLAHViAkqaGYsVvEINASDeRt~--~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~----------~~~Vdv 406 (877)
T KOG1969|consen 339 KTTLAHVIAKQAGYSVVEINASDERTA--PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP----------RAAVDV 406 (877)
T ss_pred hhHHHHHHHHhcCceEEEecccccccH--HHHHHHHHHHHhhccccccCCCcceEEEecccCCc----------HHHHHH
Confidence 999999999999999999999985442 11122333322221 12568899999999541 233344
Q ss_pred HHHHhh-------cccc---------C---CceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccC
Q 007190 291 LLVEMD-------GFEQ---------N---EGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK 351 (613)
Q Consensus 291 LL~~ld-------g~~~---------~---~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~ 351 (613)
++..+. |-.. + -.--|||.||. ..-|+|+.---|-..|.|++|...-..+-|+..+...
T Consensus 407 ilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd--LYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE 484 (877)
T KOG1969|consen 407 ILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICND--LYAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHRE 484 (877)
T ss_pred HHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecC--ccchhhhhcccceEEEEecCCChhHHHHHHHHHHhhh
Confidence 443333 1100 0 01357788885 3456774322478899999999988888888888777
Q ss_pred CCCCh-hcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC
Q 007190 352 PLADD-VDVKAIARGTPGFNGADLANLVNIAAIKAAVDGG 390 (613)
Q Consensus 352 ~l~~d-~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~ 390 (613)
++..+ ..+..|+..| ..||++.+|.....+....+
T Consensus 485 ~mr~d~~aL~~L~el~----~~DIRsCINtLQfLa~~~~r 520 (877)
T KOG1969|consen 485 NMRADSKALNALCELT----QNDIRSCINTLQFLASNVDR 520 (877)
T ss_pred cCCCCHHHHHHHHHHh----cchHHHHHHHHHHHHHhccc
Confidence 76533 2355555544 45999999999888766443
No 157
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.35 E-value=1.2e-11 Score=130.45 Aligned_cols=183 Identities=13% Similarity=0.182 Sum_probs=126.7
Q ss_pred CCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCe----------eEeecc
Q 007190 167 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPF----------FYRAGS 236 (613)
Q Consensus 167 ~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pf----------i~is~s 236 (613)
.|++|+|++++++.|...+. .++.|.+.||+||+|+||+++|+++|+.+.+.- ...+.+
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~-----------~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIK-----------QNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHH-----------hCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 59999999999999999885 356788999999999999999999999763221 011111
Q ss_pred hhh---------h-----hh---hh--------hhHHHHHHHHHHHHc----CCCeEEEEcCCCccccCCccCCcccHHH
Q 007190 237 EFE---------E-----MF---VG--------VGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKT 287 (613)
Q Consensus 237 ~~~---------~-----~~---~g--------~~~~~vr~lf~~A~~----~~P~ILfIDEiD~l~~~r~~~~~~~~~~ 287 (613)
++. . .+ .| .....+|++...+.. ....|++||++|.+ ....
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m----------~~~a 140 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM----------NEAA 140 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc----------CHHH
Confidence 111 0 00 00 112345565544432 34579999999998 4567
Q ss_pred HHHHHHHhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCC
Q 007190 288 LHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTP 367 (613)
Q Consensus 288 l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~ 367 (613)
.|.||+.|+... +.++|..|+.++.|-|.+++ |+ ..+.|++|+.++..++|+........ +.+...++....
T Consensus 141 aNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l~~~a~ 212 (314)
T PRK07399 141 ANALLKTLEEPG---NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEIL--NINFPELLALAQ 212 (314)
T ss_pred HHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhccccc--hhHHHHHHHHcC
Confidence 889999999643 33566677789999999998 88 78999999999999999876532221 223466777666
Q ss_pred CCCHHHHHHHHH
Q 007190 368 GFNGADLANLVN 379 (613)
Q Consensus 368 G~sgadL~~lv~ 379 (613)
| +++...++++
T Consensus 213 G-s~~~al~~l~ 223 (314)
T PRK07399 213 G-SPGAAIANIE 223 (314)
T ss_pred C-CHHHHHHHHH
Confidence 6 5555555544
No 158
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.35 E-value=2.1e-11 Score=143.98 Aligned_cols=193 Identities=22% Similarity=0.291 Sum_probs=127.6
Q ss_pred cccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCce-EEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhh---
Q 007190 169 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKG-ILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM--- 241 (613)
Q Consensus 169 ~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~g-vLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~--- 241 (613)
+.|+|++++.+.+.+.+...+..-. ....|.+ +||+||||||||.+|+++|..+ ..+++.++++++.+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~----~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~ 641 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLE----DPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTV 641 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCC----CCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhh
Confidence 4689999999988887765322111 0124555 7999999999999999999988 457899999888543
Q ss_pred ---------hhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccc--c-------CCc
Q 007190 242 ---------FVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE--Q-------NEG 303 (613)
Q Consensus 242 ---------~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~--~-------~~~ 303 (613)
|+|.... ..+....+++..+||+|||||.. .....+.|++.+|.-. . -.+
T Consensus 642 ~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka----------~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n 709 (852)
T TIGR03345 642 SRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKA----------HPDVLELFYQVFDKGVMEDGEGREIDFKN 709 (852)
T ss_pred ccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhc----------CHHHHHHHHHHhhcceeecCCCcEEeccc
Confidence 2332211 12334455677799999999876 3456677777776421 0 145
Q ss_pred eEEEeecCCCC-----------------------------CCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccC---
Q 007190 304 IILMAATNLPD-----------------------------ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK--- 351 (613)
Q Consensus 304 ViVIaaTN~p~-----------------------------~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~--- 351 (613)
.+||.|||... .+.|+++. |++ .|.|.+.+.++..+|+...+...
T Consensus 710 ~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~~l~~r 786 (852)
T TIGR03345 710 TVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLDRIARR 786 (852)
T ss_pred cEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 78889988521 14456666 897 88999999999999998877542
Q ss_pred -----CCC---ChhcHHHHHhcCCC--CCHHHHHHHHHH
Q 007190 352 -----PLA---DDVDVKAIARGTPG--FNGADLANLVNI 380 (613)
Q Consensus 352 -----~l~---~d~dl~~la~~t~G--~sgadL~~lv~~ 380 (613)
+.. ++..++.|+....+ +-.+.+.++++.
T Consensus 787 l~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~ 825 (852)
T TIGR03345 787 LKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQ 825 (852)
T ss_pred HHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHH
Confidence 111 22224556554432 345666666654
No 159
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.34 E-value=5.1e-12 Score=137.74 Aligned_cols=208 Identities=24% Similarity=0.329 Sum_probs=134.4
Q ss_pred CCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhhh
Q 007190 166 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMF 242 (613)
Q Consensus 166 ~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~~ 242 (613)
..+.+++|...+++++.+.+..+...+. .||++|++||||.++||+|.... +.||+.+||..+.+..
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA~s~a----------~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVAPSDA----------SVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHhCCCC----------CEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 4688999999999999999987665443 69999999999999999998865 5699999998764431
Q ss_pred -----hhh------h-HHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhc-----cc----cC
Q 007190 243 -----VGV------G-ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDG-----FE----QN 301 (613)
Q Consensus 243 -----~g~------~-~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg-----~~----~~ 301 (613)
.|. + ..+-...|+.|..+ .||||||..+ .......||..++. .. -+
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~GG---TLfLDEI~~m----------pl~~Q~kLLRvLqe~~~~rvG~~~~i~ 274 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQANGG---TLFLDEIGEM----------PLELQVKLLRVLQEREFERVGGNKPIK 274 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcCCc---eEEeeccccC----------CHHHHHHHHHHHHcCeeEecCCCcccc
Confidence 111 0 11223355555444 9999999988 23455566665542 11 13
Q ss_pred CceEEEeecCCCCCCChhhcCCCccce-------EEEccCCCHhhHHH----HHHHHhcc----CCC-CChhcHHHHHhc
Q 007190 302 EGIILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGRQE----ILELYLQD----KPL-ADDVDVKAIARG 365 (613)
Q Consensus 302 ~~ViVIaaTN~p~~Ld~aLlRpgRFd~-------~I~v~~Pd~~~R~~----IL~~~l~~----~~l-~~d~dl~~la~~ 365 (613)
-+|.||+|||.. |...+. .|||.. ++.+..|...+|.+ ++++++++ .+. ...++-+.++..
T Consensus 275 vdvRiIaaT~~d--L~~~v~-~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L 351 (464)
T COG2204 275 VDVRIIAATNRD--LEEEVA-AGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAAL 351 (464)
T ss_pred eeeEEEeecCcC--HHHHHH-cCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 458999999964 433333 366643 77888899888875 44555533 221 234444455555
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 007190 366 TPGFNGADLANLVNIAAIKAAVDGGEKLTATELE 399 (613)
Q Consensus 366 t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~ 399 (613)
+..-+|+.+++|-|.+...+.....+.|+.+++.
T Consensus 352 ~~y~WPGNVREL~N~ver~~il~~~~~i~~~~l~ 385 (464)
T COG2204 352 LAYDWPGNVRELENVVERAVILSEGPEIEVEDLP 385 (464)
T ss_pred HhCCCChHHHHHHHHHHHHHhcCCccccchhhcc
Confidence 4444444444444444344444566677777764
No 160
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.33 E-value=2.2e-11 Score=135.57 Aligned_cols=208 Identities=22% Similarity=0.297 Sum_probs=131.7
Q ss_pred CCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc-------------------
Q 007190 166 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA------------------- 226 (613)
Q Consensus 166 ~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~------------------- 226 (613)
..|+||.|++.+++.+.-.+. ...+++|.||||||||++++++++-+
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~--------------~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g 254 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAA--------------GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVG 254 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhcc--------------CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchh
Confidence 489999999998776644331 22479999999999999999998632
Q ss_pred ---------CCCeeEeecchhhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhc
Q 007190 227 ---------GVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDG 297 (613)
Q Consensus 227 ---------~~pfi~is~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg 297 (613)
..||...+++......+|.+...-...+..|.. .+|||||++.+ ....+..|+..|+.
T Consensus 255 ~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~---GvLfLDEi~e~----------~~~~~~~L~~~LE~ 321 (499)
T TIGR00368 255 KLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHN---GVLFLDELPEF----------KRSVLDALREPIED 321 (499)
T ss_pred hhccccccccCCccccccccchhhhhCCccccchhhhhccCC---CeEecCChhhC----------CHHHHHHHHHHHHc
Confidence 234444433332222233221111223444433 49999999988 23455566665653
Q ss_pred cc-----------cCCceEEEeecCCC------C-----------------CCChhhcCCCccceEEEccCCCHhh----
Q 007190 298 FE-----------QNEGIILMAATNLP------D-----------------ILDPALTRPGRFDRHIVVPNPDVRG---- 339 (613)
Q Consensus 298 ~~-----------~~~~ViVIaaTN~p------~-----------------~Ld~aLlRpgRFd~~I~v~~Pd~~~---- 339 (613)
.. -..++.+|+++|.. + .|...|+. |||.++.++.++.++
T Consensus 322 ~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~l~~~ 399 (499)
T TIGR00368 322 GSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEKLLST 399 (499)
T ss_pred CcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHHHhcc
Confidence 21 12468999999963 1 47777887 999999999765432
Q ss_pred ---------HHHHHHH------HhccC---CCCChhc-----------------HHHHHhcCCCCCHHHHHHHHHHHHHH
Q 007190 340 ---------RQEILEL------YLQDK---PLADDVD-----------------VKAIARGTPGFNGADLANLVNIAAIK 384 (613)
Q Consensus 340 ---------R~~IL~~------~l~~~---~l~~d~d-----------------l~~la~~t~G~sgadL~~lv~~Aa~~ 384 (613)
|..+.+. .++.. ....... +..... ..++|.+....+++-|...
T Consensus 400 ~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~-~~~lS~R~~~rilrvArTi 478 (499)
T TIGR00368 400 GSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALN-KLGLSSRATHRILKVARTI 478 (499)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHH
Confidence 1222221 11111 1111111 111222 2358999999999999999
Q ss_pred HHHhCCCccCHHHHHHHHH
Q 007190 385 AAVDGGEKLTATELEFAKD 403 (613)
Q Consensus 385 A~~~~~~~It~~dl~~A~~ 403 (613)
|..++.+.|+.+|+.+|+.
T Consensus 479 AdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 479 ADLKEEKNISREHLAEAIE 497 (499)
T ss_pred HhhcCCCCCCHHHHHHHHh
Confidence 9999999999999999874
No 161
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.32 E-value=4.1e-11 Score=141.80 Aligned_cols=168 Identities=21% Similarity=0.269 Sum_probs=114.4
Q ss_pred CcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhhh--
Q 007190 168 FKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMF-- 242 (613)
Q Consensus 168 f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~~-- 242 (613)
++.|+|++++.+.+.+.+...+..-.. ..++...+||+||||||||++|+++|+.+ +.+|+.++++++.+..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~---~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~ 643 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSD---PNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSV 643 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccC---CCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhH
Confidence 667999999999999888754311000 01222368999999999999999999876 4689999999875432
Q ss_pred ---hhhh-----HHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhcc--cc-------CCceE
Q 007190 243 ---VGVG-----ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF--EQ-------NEGII 305 (613)
Q Consensus 243 ---~g~~-----~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~--~~-------~~~Vi 305 (613)
.|.. ...-..+....+....++|||||++.+ .....+.|+..++.- .. -.+.+
T Consensus 644 ~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka----------~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~i 713 (857)
T PRK10865 644 SRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA----------HPDVFNILLQVLDDGRLTDGQGRTVDFRNTV 713 (857)
T ss_pred HHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhC----------CHHHHHHHHHHHhhCceecCCceEEeecccE
Confidence 1111 001111222333444489999999987 345667777776531 11 13457
Q ss_pred EEeecCCC-------------------------CCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhcc
Q 007190 306 LMAATNLP-------------------------DILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQD 350 (613)
Q Consensus 306 VIaaTN~p-------------------------~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~ 350 (613)
+|+|||.. ..+.|+|+. |+|..+.|.+++.+....|++.++..
T Consensus 714 iI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 714 VIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred EEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 88899973 124467776 99999999999999999999888754
No 162
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.32 E-value=1.1e-11 Score=138.88 Aligned_cols=209 Identities=25% Similarity=0.327 Sum_probs=126.6
Q ss_pred CCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhhh
Q 007190 166 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMF 242 (613)
Q Consensus 166 ~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~~ 242 (613)
.+|++++|.+++.+.+.+.+..+.. .+.+|||+|++||||+++|+++.... +.||+.++|..+.+..
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~----------~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~l 278 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYAR----------SDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESL 278 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhC----------CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhH
Confidence 5799999999999998888765433 23479999999999999999998754 6799999998774421
Q ss_pred h-----hh------hH--HHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccc---------c
Q 007190 243 V-----GV------GA--RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------Q 300 (613)
Q Consensus 243 ~-----g~------~~--~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~---------~ 300 (613)
. |. ++ ..-..+|+.|.. ..||||||+.|. ......|+..++.-. .
T Consensus 279 leseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp----------~~~Q~~Ll~~L~~~~~~r~g~~~~~ 345 (526)
T TIGR02329 279 LEAELFGYEEGAFTGARRGGRTGLIEAAHR---GTLFLDEIGEMP----------LPLQTRLLRVLEEREVVRVGGTEPV 345 (526)
T ss_pred HHHHhcCCcccccccccccccccchhhcCC---ceEEecChHhCC----------HHHHHHHHHHHhcCcEEecCCCcee
Confidence 1 11 00 012345555543 389999999992 344455555554211 1
Q ss_pred CCceEEEeecCCCCCCChhhcCCCccce-------EEEccCCCHhhHHH----HHHHHhccC----CCC-ChhcHHH---
Q 007190 301 NEGIILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGRQE----ILELYLQDK----PLA-DDVDVKA--- 361 (613)
Q Consensus 301 ~~~ViVIaaTN~p~~Ld~aLlRpgRFd~-------~I~v~~Pd~~~R~~----IL~~~l~~~----~l~-~d~dl~~--- 361 (613)
..++.+|++||.+- . .+...|+|.. .+.+..|...+|.+ ++.+++.+. ... ++..+..
T Consensus 346 ~~dvRiIaat~~~l--~-~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~ 422 (526)
T TIGR02329 346 PVDVRVVAATHCAL--T-TAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAG 422 (526)
T ss_pred eecceEEeccCCCH--H-HHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHH
Confidence 23468899988642 1 1122234432 45666777777654 455555432 111 1111222
Q ss_pred ----HHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 007190 362 ----IARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEF 400 (613)
Q Consensus 362 ----la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~ 400 (613)
|....---+-++|++++++++..+.......|+.+++..
T Consensus 423 ~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~~ 465 (526)
T TIGR02329 423 VADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLRA 465 (526)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhhh
Confidence 333322225578888888877654322345688877643
No 163
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.31 E-value=4.8e-11 Score=141.48 Aligned_cols=200 Identities=20% Similarity=0.277 Sum_probs=130.2
Q ss_pred CcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhhh--
Q 007190 168 FKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMF-- 242 (613)
Q Consensus 168 f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~~-- 242 (613)
.+.|+|++++.+.+.+.+...+..-. ...++...+||+||||||||++|+++|..+ +.+++.++++++.+..
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~---~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~ 640 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLS---DPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSV 640 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCC---CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchH
Confidence 35699999999999988765331100 012344569999999999999999999976 5689999998875422
Q ss_pred ---hhhhH-----HHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhcc--cc-------CCceE
Q 007190 243 ---VGVGA-----RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF--EQ-------NEGII 305 (613)
Q Consensus 243 ---~g~~~-----~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~--~~-------~~~Vi 305 (613)
.|... .....+....+....+|||||||+.+ .....+.|+..|+.- .. -.+.+
T Consensus 641 ~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka----------~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~i 710 (852)
T TIGR03346 641 ARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA----------HPDVFNVLLQVLDDGRLTDGQGRTVDFRNTV 710 (852)
T ss_pred HHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC----------CHHHHHHHHHHHhcCceecCCCeEEecCCcE
Confidence 11110 01123334445555679999999987 345677777777531 11 13578
Q ss_pred EEeecCCCCC-------------------------CChhhcCCCccceEEEccCCCHhhHHHHHHHHhccC-------CC
Q 007190 306 LMAATNLPDI-------------------------LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK-------PL 353 (613)
Q Consensus 306 VIaaTN~p~~-------------------------Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~-------~l 353 (613)
||+|||.... +.|.|+. |+|.++.|.+++.+...+|+...+... .+
T Consensus 711 iI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~ 788 (852)
T TIGR03346 711 IIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKI 788 (852)
T ss_pred EEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 8999997321 3355665 999999999999999999988776421 11
Q ss_pred C---ChhcHHHHHhcC--CCCCHHHHHHHHHHHH
Q 007190 354 A---DDVDVKAIARGT--PGFNGADLANLVNIAA 382 (613)
Q Consensus 354 ~---~d~dl~~la~~t--~G~sgadL~~lv~~Aa 382 (613)
. ++..+..|++.. +.+..+.|+++++...
T Consensus 789 ~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i 822 (852)
T TIGR03346 789 TLELSDAALDFLAEAGYDPVYGARPLKRAIQREI 822 (852)
T ss_pred eecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHH
Confidence 1 222244555542 2345566776666544
No 164
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.31 E-value=1.1e-10 Score=119.92 Aligned_cols=190 Identities=17% Similarity=0.209 Sum_probs=118.1
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCC-Cee--Ee-e----cchhhhh---hhhhh------H---HHHHHHH-HHHHcCCC
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGV-PFF--YR-A----GSEFEEM---FVGVG------A---RRVRSLF-QAAKKKAP 262 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~-pfi--~i-s----~s~~~~~---~~g~~------~---~~vr~lf-~~A~~~~P 262 (613)
.++|+||+|+|||++++.+++++.. .+. .+ + ..++... ..|.. . ..+...+ .......+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 5889999999999999999998752 222 11 1 1111111 11111 0 1122222 22345667
Q ss_pred eEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCce--EEEeecCCCCCCC----hhhcCCCccceEEEccCCC
Q 007190 263 CIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGI--ILMAATNLPDILD----PALTRPGRFDRHIVVPNPD 336 (613)
Q Consensus 263 ~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~V--iVIaaTN~p~~Ld----~aLlRpgRFd~~I~v~~Pd 336 (613)
.+|+|||+|.+.. .....+..+..... .....+ ++++.++..+.+. ..+.+ |+...+.+++.+
T Consensus 125 ~vliiDe~~~l~~-------~~~~~l~~l~~~~~--~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~~l~~l~ 193 (269)
T TIGR03015 125 ALLVVDEAQNLTP-------ELLEELRMLSNFQT--DNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASCHLGPLD 193 (269)
T ss_pred eEEEEECcccCCH-------HHHHHHHHHhCccc--CCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeeeeCCCCC
Confidence 8999999998821 11222222221111 112222 2333222211221 13444 777889999999
Q ss_pred HhhHHHHHHHHhccCC-----CCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 007190 337 VRGRQEILELYLQDKP-----LADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRI 405 (613)
Q Consensus 337 ~~~R~~IL~~~l~~~~-----l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A~~~v 405 (613)
.++..+++...+...+ .-++..+..|.+.+.|. ++.|..+|+.+...|..++.+.|+.++++.++..+
T Consensus 194 ~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~-p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~ 266 (269)
T TIGR03015 194 REETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI-PRLINILCDRLLLSAFLEEKREIGGEEVREVIAEI 266 (269)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 9999999998886432 12445688899999986 56699999999999999999999999999998764
No 165
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.30 E-value=3.9e-11 Score=117.11 Aligned_cols=145 Identities=18% Similarity=0.281 Sum_probs=101.2
Q ss_pred CCCCceEEEEccCCChHHHHHHHHHHhcCCC------------------------eeEeecchhhhhhhhhhHHHHHHHH
Q 007190 199 GKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------------------FFYRAGSEFEEMFVGVGARRVRSLF 254 (613)
Q Consensus 199 ~~~p~gvLL~GPpGTGKT~LAralA~e~~~p------------------------fi~is~s~~~~~~~g~~~~~vr~lf 254 (613)
.+.|..+||+||||+|||++|+++++..... +..+.... . ..+...++.+.
T Consensus 11 ~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~ 85 (188)
T TIGR00678 11 GRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELV 85 (188)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHH
Confidence 4677889999999999999999999987432 11111100 0 01234555556
Q ss_pred HHHHc----CCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCCCCChhhcCCCccceEE
Q 007190 255 QAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHI 330 (613)
Q Consensus 255 ~~A~~----~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I 330 (613)
+.+.. ....||+|||+|.+. ....+.|+..|+. ++...++|.+||.+..+.+++++ |+ ..+
T Consensus 86 ~~~~~~~~~~~~kviiide~~~l~----------~~~~~~Ll~~le~--~~~~~~~il~~~~~~~l~~~i~s--r~-~~~ 150 (188)
T TIGR00678 86 EFLSRTPQESGRRVVIIEDAERMN----------EAAANALLKTLEE--PPPNTLFILITPSPEKLLPTIRS--RC-QVL 150 (188)
T ss_pred HHHccCcccCCeEEEEEechhhhC----------HHHHHHHHHHhcC--CCCCeEEEEEECChHhChHHHHh--hc-EEe
Confidence 55543 345699999999982 3467788988886 33345566667777899999988 77 589
Q ss_pred EccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCC
Q 007190 331 VVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPG 368 (613)
Q Consensus 331 ~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G 368 (613)
.+++|+.++..++++.. ++ ++..+..++..+.|
T Consensus 151 ~~~~~~~~~~~~~l~~~----gi-~~~~~~~i~~~~~g 183 (188)
T TIGR00678 151 PFPPLSEEALLQWLIRQ----GI-SEEAAELLLALAGG 183 (188)
T ss_pred eCCCCCHHHHHHHHHHc----CC-CHHHHHHHHHHcCC
Confidence 99999999999988876 23 33446666666654
No 166
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.30 E-value=2.2e-10 Score=113.52 Aligned_cols=194 Identities=21% Similarity=0.309 Sum_probs=137.6
Q ss_pred CCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecch
Q 007190 161 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSE 237 (613)
Q Consensus 161 ~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~ 237 (613)
|..+.+.+.+++|++.+|+.|.+-...+.. +.+..+|||+|..||||++|+||+.++. +..+++++.++
T Consensus 52 ~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~--------G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~d 123 (287)
T COG2607 52 PDPDPIDLADLVGVDRQKEALVRNTEQFAE--------GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKED 123 (287)
T ss_pred CCCCCcCHHHHhCchHHHHHHHHHHHHHHc--------CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHH
Confidence 455668999999999999998776554332 4566799999999999999999998876 56789998887
Q ss_pred hhhhhhhhhHHHHHHHHHHHHcC-CCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhcc--ccCCceEEEeecCCCC
Q 007190 238 FEEMFVGVGARRVRSLFQAAKKK-APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF--EQNEGIILMAATNLPD 314 (613)
Q Consensus 238 ~~~~~~g~~~~~vr~lf~~A~~~-~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~--~~~~~ViVIaaTN~p~ 314 (613)
+.. +-.+++..+.. ..-|||+|++-- .+.......|-..|||- ....+|+|-+|+|+-.
T Consensus 124 l~~---------Lp~l~~~Lr~~~~kFIlFcDDLSF---------e~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRH 185 (287)
T COG2607 124 LAT---------LPDLVELLRARPEKFILFCDDLSF---------EEGDDAYKALKSALEGGVEGRPANVLFYATSNRRH 185 (287)
T ss_pred Hhh---------HHHHHHHHhcCCceEEEEecCCCC---------CCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcc
Confidence 654 33455555543 246999998732 22344455566667764 3357899999999876
Q ss_pred CCChh--------------------hcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCCh-hcHH----HHHhcCCCC
Q 007190 315 ILDPA--------------------LTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADD-VDVK----AIARGTPGF 369 (613)
Q Consensus 315 ~Ld~a--------------------LlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d-~dl~----~la~~t~G~ 369 (613)
.|+.. +.-+.||...+.|++++.++-..|+.+++++..++-+ ..+. ..|..-.|-
T Consensus 186 Ll~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~R 265 (287)
T COG2607 186 LLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGR 265 (287)
T ss_pred cccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 55421 1123499999999999999999999999998877642 2222 233444556
Q ss_pred CHHHHHHHHHH
Q 007190 370 NGADLANLVNI 380 (613)
Q Consensus 370 sgadL~~lv~~ 380 (613)
||+-..+.++.
T Consensus 266 SGR~A~QF~~~ 276 (287)
T COG2607 266 SGRVAWQFIRD 276 (287)
T ss_pred ccHhHHHHHHH
Confidence 66655555543
No 167
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.30 E-value=1.1e-10 Score=127.82 Aligned_cols=212 Identities=17% Similarity=0.168 Sum_probs=127.7
Q ss_pred cCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCC--CeeEeecch-hhhhhhhhh-
Q 007190 171 VKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV--PFFYRAGSE-FEEMFVGVG- 246 (613)
Q Consensus 171 V~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~--pfi~is~s~-~~~~~~g~~- 246 (613)
|+|.+++.+.+...+. ...++||+||||||||++|++++..++. ||....+.- ......|..
T Consensus 22 i~gre~vI~lll~aal--------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~ 87 (498)
T PRK13531 22 LYERSHAIRLCLLAAL--------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLS 87 (498)
T ss_pred ccCcHHHHHHHHHHHc--------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHH
Confidence 5788877655544331 1247999999999999999999997643 566554431 111222211
Q ss_pred HHHH--HHHHHHHHcC---CCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhc-c-c------cCCceEEEeecCCC
Q 007190 247 ARRV--RSLFQAAKKK---APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDG-F-E------QNEGIILMAATNLP 313 (613)
Q Consensus 247 ~~~v--r~lf~~A~~~---~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg-~-~------~~~~ViVIaaTN~p 313 (613)
.... ..-|.....+ ...+||+|||..+ ...+++.||..|+. . . +-...++++|||..
T Consensus 88 i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra----------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~L 157 (498)
T PRK13531 88 IQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA----------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNEL 157 (498)
T ss_pred HhhhhhcCchhhhcCCccccccEEeecccccC----------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCC
Confidence 0110 1223222211 2349999999866 45678888888842 1 0 11113445555632
Q ss_pred C---CCChhhcCCCccceEEEccCCC-HhhHHHHHHHHhcc--CCC-----CChhc--------------------HHHH
Q 007190 314 D---ILDPALTRPGRFDRHIVVPNPD-VRGRQEILELYLQD--KPL-----ADDVD--------------------VKAI 362 (613)
Q Consensus 314 ~---~Ld~aLlRpgRFd~~I~v~~Pd-~~~R~~IL~~~l~~--~~l-----~~d~d--------------------l~~l 362 (613)
. ...+++.. ||-..+.+|+|+ .++-.+++...... .+. ....+ +..|
T Consensus 158 PE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L 235 (498)
T PRK13531 158 PEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQL 235 (498)
T ss_pred cccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHH
Confidence 2 12347887 998899999997 45557777654221 101 00011 1123
Q ss_pred Hh---cC---CCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcCC
Q 007190 363 AR---GT---PGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRILMGT 409 (613)
Q Consensus 363 a~---~t---~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A~~~v~~g~ 409 (613)
.+ .+ ...|++--..+++.+...|..+|++.|+.+|+. ....++...
T Consensus 236 ~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~HR 287 (498)
T PRK13531 236 RQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLWHD 287 (498)
T ss_pred HHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhccC
Confidence 22 12 237889999999999999999999999999999 555565543
No 168
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.30 E-value=5.4e-11 Score=135.75 Aligned_cols=101 Identities=26% Similarity=0.329 Sum_probs=66.7
Q ss_pred ceEEEeecCCC--CCCChhhcCCCccc---eEEEccC--CC-HhhHHHHHHHHhc---cCC-CC--ChhcHHHHHh---c
Q 007190 303 GIILMAATNLP--DILDPALTRPGRFD---RHIVVPN--PD-VRGRQEILELYLQ---DKP-LA--DDVDVKAIAR---G 365 (613)
Q Consensus 303 ~ViVIaaTN~p--~~Ld~aLlRpgRFd---~~I~v~~--Pd-~~~R~~IL~~~l~---~~~-l~--~d~dl~~la~---~ 365 (613)
++.+|+++|.. ..++|.++. ||+ ..+.++. |+ .+.|.++.+...+ ..+ +. ++..+..+.+ +
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R 345 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQR 345 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHH
Confidence 67899999975 578999998 998 6666543 44 5555555444332 221 11 2222333321 1
Q ss_pred CC------CCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 007190 366 TP------GFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRI 405 (613)
Q Consensus 366 t~------G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A~~~v 405 (613)
.. ..+.++|.++++.|...|..++...|+.+|+++|++..
T Consensus 346 ~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~ 391 (608)
T TIGR00764 346 RAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLA 391 (608)
T ss_pred HHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHH
Confidence 11 14579999999999888878888899999999997754
No 169
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.29 E-value=1.3e-10 Score=123.67 Aligned_cols=133 Identities=30% Similarity=0.357 Sum_probs=90.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhhhhhhhHHHHHHH------HHHHHc--CCC--eEEEEcCCCc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSL------FQAAKK--KAP--CIIFIDEIDA 272 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~~~g~~~~~vr~l------f~~A~~--~~P--~ILfIDEiD~ 272 (613)
+++||.||||||||++|+++|..++.+|+.++|..........+....... |..... ... +|+|+|||+.
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInr 123 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINR 123 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEecccc
Confidence 479999999999999999999999999999999765332111111111110 000000 001 4999999998
Q ss_pred cccCCccCCcccHHHHHHHHHHhhc----------cccCCceEEEeecC-----CCCCCChhhcCCCccceEEEccCCCH
Q 007190 273 VGSTRKQWEGHTKKTLHQLLVEMDG----------FEQNEGIILMAATN-----LPDILDPALTRPGRFDRHIVVPNPDV 337 (613)
Q Consensus 273 l~~~r~~~~~~~~~~l~~LL~~ldg----------~~~~~~ViVIaaTN-----~p~~Ld~aLlRpgRFd~~I~v~~Pd~ 337 (613)
. ...+.+.|+..|+. +.-..+++||+|.| ....|++++++ ||-..+.++.|+.
T Consensus 124 a----------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~ 191 (329)
T COG0714 124 A----------PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDS 191 (329)
T ss_pred C----------CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEecCCCCc
Confidence 7 34566677776664 33456789999999 44578999999 9999999999954
Q ss_pred hh-HHHHHHHH
Q 007190 338 RG-RQEILELY 347 (613)
Q Consensus 338 ~~-R~~IL~~~ 347 (613)
++ ...++...
T Consensus 192 ~~e~~~i~~~~ 202 (329)
T COG0714 192 EEEERIILARV 202 (329)
T ss_pred hHHHHHHHHhC
Confidence 44 44444443
No 170
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.29 E-value=2.2e-11 Score=131.31 Aligned_cols=198 Identities=23% Similarity=0.283 Sum_probs=128.5
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhh
Q 007190 165 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM 241 (613)
Q Consensus 165 ~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~ 241 (613)
...+.+|+|...+...+.+.++.....+. .|||+|.+||||..+||+|.... +.||+++||+.+.+.
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA~Sd~----------tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPes 288 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVAKSDS----------TVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPES 288 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHhcCCC----------eEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchH
Confidence 56799999999999999999887655443 79999999999999999998865 679999999887654
Q ss_pred hhh-hhHHHHHHHHHHHHcC--------CCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhh-----cccc----CCc
Q 007190 242 FVG-VGARRVRSLFQAAKKK--------APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMD-----GFEQ----NEG 303 (613)
Q Consensus 242 ~~g-~~~~~vr~lf~~A~~~--------~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ld-----g~~~----~~~ 303 (613)
... +--...+..|.-|... ....||+|||..+.- .....||..+. .... .-.
T Consensus 289 LlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL----------~lQaKLLRvLQegEieRvG~~r~ikVD 358 (550)
T COG3604 289 LLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPL----------ALQAKLLRVLQEGEIERVGGDRTIKVD 358 (550)
T ss_pred HHHHHHhcccccccccchhccCcceeecCCCeEechhhccCCH----------HHHHHHHHHHhhcceeecCCCceeEEE
Confidence 221 1111223333332211 123899999988822 23334444433 2212 235
Q ss_pred eEEEeecCCCCCCChhhcCCCccce-------EEEccCCCHhhHHH----HHHHHhcc----CCCC----ChhcHHHHHh
Q 007190 304 IILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGRQE----ILELYLQD----KPLA----DDVDVKAIAR 364 (613)
Q Consensus 304 ViVIaaTN~p~~Ld~aLlRpgRFd~-------~I~v~~Pd~~~R~~----IL~~~l~~----~~l~----~d~dl~~la~ 364 (613)
|.||+|||+ +|-.++. .|+|.. ++.+..|...+|.+ +.++|+++ .+.. +...++.|..
T Consensus 359 VRiIAATNR--DL~~~V~-~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~ 435 (550)
T COG3604 359 VRVIAATNR--DLEEMVR-DGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSS 435 (550)
T ss_pred EEEEeccch--hHHHHHH-cCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHc
Confidence 899999997 4544444 377743 66677788888864 23334332 2221 2223455555
Q ss_pred cCCCCCHHHHHHHHHHHHHHH
Q 007190 365 GTPGFNGADLANLVNIAAIKA 385 (613)
Q Consensus 365 ~t~G~sgadL~~lv~~Aa~~A 385 (613)
..---+.++|+|++++|+..|
T Consensus 436 y~wPGNVRELen~veRavlla 456 (550)
T COG3604 436 YEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred CCCCCcHHHHHHHHHHHHHHh
Confidence 432236699999999999887
No 171
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.29 E-value=6e-11 Score=124.73 Aligned_cols=150 Identities=25% Similarity=0.334 Sum_probs=104.9
Q ss_pred cccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcC---------------------
Q 007190 169 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG--------------------- 227 (613)
Q Consensus 169 ~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~--------------------- 227 (613)
++++|.+++...+...+.. ..+.|..+||+||||||||++|.++|+++.
T Consensus 1 ~~~~~~~~~~~~l~~~~~~----------~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 1 DELVPWQEAVKRLLVQALE----------SGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CCcccchhHHHHHHHHHHh----------cCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 3567777777776665531 235666799999999999999999999886
Q ss_pred ---CCeeEeecchhhhhhhhhhHHHHHHHHHHHHc----CCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhcccc
Q 007190 228 ---VPFFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQ 300 (613)
Q Consensus 228 ---~pfi~is~s~~~~~~~g~~~~~vr~lf~~A~~----~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~ 300 (613)
-.++.++.++-...- .....++++-..... ....|++|||+|.+ .....|.++..++. +
T Consensus 71 ~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~m----------t~~A~nallk~lEe--p 136 (325)
T COG0470 71 GNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKL----------TEDAANALLKTLEE--P 136 (325)
T ss_pred cCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHH----------hHHHHHHHHHHhcc--C
Confidence 356666666543321 123344444443322 33569999999999 34788899999984 4
Q ss_pred CCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHH
Q 007190 301 NEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILE 345 (613)
Q Consensus 301 ~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~ 345 (613)
.....+|.+||.++.+-+.+++ |+ ..+.|++|+........+
T Consensus 137 ~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 137 PKNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAIAWLE 178 (325)
T ss_pred CCCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHHHHHhh
Confidence 5566778888999999888888 77 677887766544444333
No 172
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.28 E-value=8.1e-11 Score=139.15 Aligned_cols=166 Identities=25% Similarity=0.339 Sum_probs=115.9
Q ss_pred cccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCC-ceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhh---
Q 007190 169 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLP-KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM--- 241 (613)
Q Consensus 169 ~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p-~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~--- 241 (613)
+.|+|++++++.+...+...+..-. ....| ..+||+||||||||++|+++|+.+ +.+++.++++++.+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~----~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~ 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLK----NPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTV 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhccc----CCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccH
Confidence 5689999999999887764321100 11224 358999999999999999999987 468999998887432
Q ss_pred --hhhhhH-----HHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccc---------cCCceE
Q 007190 242 --FVGVGA-----RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QNEGII 305 (613)
Q Consensus 242 --~~g~~~-----~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~---------~~~~Vi 305 (613)
+.|... .....+....+....+||+|||+|.+ .....+.|++.|+.-. .-.+.+
T Consensus 585 ~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka----------~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i 654 (821)
T CHL00095 585 SKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA----------HPDIFNLLLQILDDGRLTDSKGRTIDFKNTL 654 (821)
T ss_pred HHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhC----------CHHHHHHHHHHhccCceecCCCcEEecCceE
Confidence 222111 11223555556666689999999988 3567778888877421 124688
Q ss_pred EEeecCCCCC-------------------------------------CChhhcCCCccceEEEccCCCHhhHHHHHHHHh
Q 007190 306 LMAATNLPDI-------------------------------------LDPALTRPGRFDRHIVVPNPDVRGRQEILELYL 348 (613)
Q Consensus 306 VIaaTN~p~~-------------------------------------Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l 348 (613)
+|.|||.... +.|.++. |+|.+|.|.+.+.++..+|++..+
T Consensus 655 ~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~~l 732 (821)
T CHL00095 655 IIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEIML 732 (821)
T ss_pred EEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHHHH
Confidence 9999885321 1234555 999999999999999999998877
Q ss_pred cc
Q 007190 349 QD 350 (613)
Q Consensus 349 ~~ 350 (613)
.+
T Consensus 733 ~~ 734 (821)
T CHL00095 733 KN 734 (821)
T ss_pred HH
Confidence 54
No 173
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.27 E-value=1.4e-10 Score=132.05 Aligned_cols=260 Identities=12% Similarity=0.117 Sum_probs=148.2
Q ss_pred ccccCCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeE-eec
Q 007190 157 KEVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFY-RAG 235 (613)
Q Consensus 157 ~~~~~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~-is~ 235 (613)
.+|.....+.+++||+|+++..++++.++..... +..+.+.++|+||||||||++++.+|++++..++. .+.
T Consensus 72 ~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~-------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~np 144 (637)
T TIGR00602 72 EPWVEKYKPETQHELAVHKKKIEEVETWLKAQVL-------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNP 144 (637)
T ss_pred CchHHHhCCCCHHHhcCcHHHHHHHHHHHHhccc-------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhh
Confidence 4577778889999999999998888777654322 22233469999999999999999999998876544 111
Q ss_pred c---hhh----------hhh--hhhhHHHHHHHHHHHHc----------CCCeEEEEcCCCccccCCccCCcccHHHHHH
Q 007190 236 S---EFE----------EMF--VGVGARRVRSLFQAAKK----------KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQ 290 (613)
Q Consensus 236 s---~~~----------~~~--~g~~~~~vr~lf~~A~~----------~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~ 290 (613)
. ... ..+ .......++.++..+.. ....|||||||+.+... ....+..
T Consensus 145 v~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-------~~~~lq~ 217 (637)
T TIGR00602 145 TLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-------DTRALHE 217 (637)
T ss_pred hhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-------hHHHHHH
Confidence 1 000 000 01122344455555541 34569999999987532 2235555
Q ss_pred HHH-HhhccccCCceEEEeecC-CCC--------------CCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCC-
Q 007190 291 LLV-EMDGFEQNEGIILMAATN-LPD--------------ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPL- 353 (613)
Q Consensus 291 LL~-~ldg~~~~~~ViVIaaTN-~p~--------------~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l- 353 (613)
+|. ... ....+.+|++++ .|. .|.++++..-|. .+|.|++.+.....+.|+..+.....
T Consensus 218 lLr~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~ 293 (637)
T TIGR00602 218 ILRWKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKK 293 (637)
T ss_pred HHHHHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhc
Confidence 555 221 122333333333 221 133677642244 47899999999988877777764311
Q ss_pred -------CChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHH-------hCCCccCHHHHHHHHHHHhcCCccccc---cc
Q 007190 354 -------ADDVDVKAIARGTPGFNGADLANLVNIAAIKAAV-------DGGEKLTATELEFAKDRILMGTERKTM---FI 416 (613)
Q Consensus 354 -------~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~-------~~~~~It~~dl~~A~~~v~~g~~~~~~---~~ 416 (613)
.....+..|+.. +.+|++.+++.....+.+ .+...++..++..+..+...-...... .+
T Consensus 294 ~~~~~~~p~~~~l~~I~~~----s~GDiRsAIn~LQf~~~~~g~~a~~~~~~~vs~~hv~~a~~k~~~~t~~e~~~l~~~ 369 (637)
T TIGR00602 294 NGEKIKVPKKTSVELLCQG----CSGDIRSAINSLQFSSSKSGSLPIKKRMSTKSDAHASKSKIKGKHSSNNENQEIQAL 369 (637)
T ss_pred cccccccCCHHHHHHHHHh----CCChHHHHHHHHHHHHhcCCccccccccccccHHHhhhccccCCCCCchhHHHHHhh
Confidence 122346667664 455888888765554332 223356666655544332110000000 11
Q ss_pred hhhhHHHHHHHHhhhHHHHHhc
Q 007190 417 SEESKKLTAYHESGHAIVAFNT 438 (613)
Q Consensus 417 ~~~~~~~~A~hEaGhAlva~~~ 438 (613)
...+..+..+|-.|..|-...-
T Consensus 370 ~~rd~sl~lfhalgkily~Kr~ 391 (637)
T TIGR00602 370 GGKDVSLFLFRALGKILYCKRA 391 (637)
T ss_pred ccccchhHHHHHhChhhccccc
Confidence 2223456678888887765443
No 174
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.27 E-value=6.7e-11 Score=132.82 Aligned_cols=220 Identities=17% Similarity=0.194 Sum_probs=132.1
Q ss_pred cccCCCHHHHHHHHHHHHHhcCchhhhhcC--CCCCceEEEEccCCChHHHHHHHHHHhcCCC-eeEe---ecchhhhhh
Q 007190 169 KDVKGCDDAKQELVEVVEYLKNPSKFTRLG--GKLPKGILLTGAPGTGKTLLAKAIAGEAGVP-FFYR---AGSEFEEMF 242 (613)
Q Consensus 169 ~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg--~~~p~gvLL~GPpGTGKT~LAralA~e~~~p-fi~i---s~s~~~~~~ 242 (613)
-+|.|++.+|..+.-.+ +-.......-| .+-..+|||+|+||||||++|+++++..... |+.. ++..+....
T Consensus 203 p~i~G~~~~k~~l~l~l--~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~ 280 (509)
T smart00350 203 PSIYGHEDIKKAILLLL--FGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAV 280 (509)
T ss_pred ccccCcHHHHHHHHHHH--hCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccc
Confidence 35778888776664332 11110000001 1223479999999999999999999977543 3321 221221100
Q ss_pred hhh---hHHHH-HHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccc-----------cCCceEEE
Q 007190 243 VGV---GARRV-RSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE-----------QNEGIILM 307 (613)
Q Consensus 243 ~g~---~~~~v-r~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~-----------~~~~ViVI 307 (613)
... +...+ ...+..| ...+++|||+|.+. ......|+..|+.-. -+.++.||
T Consensus 281 ~~~~~~g~~~~~~G~l~~A---~~Gil~iDEi~~l~----------~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~vi 347 (509)
T smart00350 281 TRDPETREFTLEGGALVLA---DNGVCCIDEFDKMD----------DSDRTAIHEAMEQQTISIAKAGITTTLNARCSVL 347 (509)
T ss_pred eEccCcceEEecCccEEec---CCCEEEEechhhCC----------HHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEE
Confidence 000 00000 0111122 23499999999982 334455565564311 13568899
Q ss_pred eecCCCC-------------CCChhhcCCCccceEEE-ccCCCHhhHHHHHHHHhccCC---------------------
Q 007190 308 AATNLPD-------------ILDPALTRPGRFDRHIV-VPNPDVRGRQEILELYLQDKP--------------------- 352 (613)
Q Consensus 308 aaTN~p~-------------~Ld~aLlRpgRFd~~I~-v~~Pd~~~R~~IL~~~l~~~~--------------------- 352 (613)
||+|..+ .|++++++ |||..+. .+.|+.+...+|.++.+....
T Consensus 348 Aa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ 425 (509)
T smart00350 348 AAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRK 425 (509)
T ss_pred EEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHH
Confidence 9999753 58999999 9998654 478999998888887542110
Q ss_pred --------C---CChhcHHHHH------hc---------CCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 007190 353 --------L---ADDVDVKAIA------RG---------TPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRI 405 (613)
Q Consensus 353 --------l---~~d~dl~~la------~~---------t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A~~~v 405 (613)
. -++...+.|. +. ..+.|++.+..+++-|..+|..+.++.|+.+|+..|++-+
T Consensus 426 yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~ 504 (509)
T smart00350 426 YIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLL 504 (509)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 0 0111111111 11 2356889999999999999999999999999999998644
No 175
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.26 E-value=2.5e-10 Score=115.66 Aligned_cols=100 Identities=19% Similarity=0.214 Sum_probs=74.5
Q ss_pred ceEEEeecCC-------------CCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCC
Q 007190 303 GIILMAATNL-------------PDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPG 368 (613)
Q Consensus 303 ~ViVIaaTN~-------------p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G 368 (613)
.-+||.|||+ |..+++.|+. |+ ..|..-+++.++.++|++...+...+. ++..+..++.....
T Consensus 325 aPivifAsNrG~~~irGt~d~~sPhGip~dllD--Rl-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~ 401 (456)
T KOG1942|consen 325 APIVIFASNRGMCTIRGTEDILSPHGIPPDLLD--RL-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTS 401 (456)
T ss_pred CceEEEecCCcceeecCCcCCCCCCCCCHHHhh--he-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccc
Confidence 3466667774 4567777776 65 466666788889999999998877665 33446777776655
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 007190 369 FNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRI 405 (613)
Q Consensus 369 ~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A~~~v 405 (613)
-|-+-..+++.-|.+.|...+++.|..+|++++-+-.
T Consensus 402 tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~~Lf 438 (456)
T KOG1942|consen 402 TSLRYAVQLLTPASILAKTNGRKEISVEDVEEVTELF 438 (456)
T ss_pred hhHHHHHHhcCHHHHHHHHcCCceeecccHHHHHHHH
Confidence 6667777788888889999999999999999886644
No 176
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.26 E-value=6e-11 Score=126.09 Aligned_cols=198 Identities=24% Similarity=0.264 Sum_probs=116.0
Q ss_pred cCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhhhh----
Q 007190 171 VKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV---- 243 (613)
Q Consensus 171 V~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~~~---- 243 (613)
++|.+.+.+.+.+.+..+.. ....|||+|++||||+++|++|.... +.||+.++|..+.+...
T Consensus 1 liG~S~~m~~~~~~~~~~a~----------~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----------LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----------CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 47888888887777765432 23469999999999999999998755 57999999987643211
Q ss_pred -hhh-------HHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccc---------cCCceEE
Q 007190 244 -GVG-------ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QNEGIIL 306 (613)
Q Consensus 244 -g~~-------~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~---------~~~~ViV 306 (613)
|.. ......+|..|. ..+|||||||.+. ......|+..++.-. ...++.+
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a~---gGtL~Ldei~~L~----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~Ri 137 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERAD---GGTLFLDELATAS----------LLVQEKLLRVIEYGEFERVGGSQTLQVDVRL 137 (329)
T ss_pred hccccccccCcccccCCchhhCC---CCEEEeCChHhCC----------HHHHHHHHHHHHcCcEEecCCCceeccceEE
Confidence 110 001122344443 3599999999992 344455555554311 1245789
Q ss_pred EeecCCCC-------CCChhhcCCCccceEEEccCCCHhhHHH----HHHHHhcc----CCC-----CChhcHHHHHhcC
Q 007190 307 MAATNLPD-------ILDPALTRPGRFDRHIVVPNPDVRGRQE----ILELYLQD----KPL-----ADDVDVKAIARGT 366 (613)
Q Consensus 307 IaaTN~p~-------~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~----IL~~~l~~----~~l-----~~d~dl~~la~~t 366 (613)
|++||..- .+.+.|.. ||. .+.+..|...+|.+ ++++++.. ... -++..+..|....
T Consensus 138 I~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~ 214 (329)
T TIGR02974 138 VCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYH 214 (329)
T ss_pred EEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCC
Confidence 99998641 23344443 442 45666777777654 44454432 111 1222344455444
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCccCHHH
Q 007190 367 PGFNGADLANLVNIAAIKAAVDGGEKLTATE 397 (613)
Q Consensus 367 ~G~sgadL~~lv~~Aa~~A~~~~~~~It~~d 397 (613)
---+.++|++++++++..+ ..+.++.++
T Consensus 215 WPGNvrEL~n~i~~~~~~~---~~~~~~~~~ 242 (329)
T TIGR02974 215 WPGNVRELKNVVERSVYRH---GLEEAPIDE 242 (329)
T ss_pred CCchHHHHHHHHHHHHHhC---CCCccchhh
Confidence 2225577777777666543 233555554
No 177
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.25 E-value=6.2e-11 Score=106.64 Aligned_cols=125 Identities=34% Similarity=0.494 Sum_probs=83.8
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCC---eeEeecchhhhhh--------------hhhhHHHHHHHHHHHHcCCCeE
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEAGVP---FFYRAGSEFEEMF--------------VGVGARRVRSLFQAAKKKAPCI 264 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~~~p---fi~is~s~~~~~~--------------~g~~~~~vr~lf~~A~~~~P~I 264 (613)
+..++|+||||||||++++.+|..+..+ +++++++...... ........+.++..++...|++
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 3579999999999999999999999775 8888887653321 1234566778888888887899
Q ss_pred EEEcCCCccccCCccCCcccHHHHHHH---HHHhhccccCCceEEEeecCC-CCCCChhhcCCCccceEEEccCC
Q 007190 265 IFIDEIDAVGSTRKQWEGHTKKTLHQL---LVEMDGFEQNEGIILMAATNL-PDILDPALTRPGRFDRHIVVPNP 335 (613)
Q Consensus 265 LfIDEiD~l~~~r~~~~~~~~~~l~~L---L~~ldg~~~~~~ViVIaaTN~-p~~Ld~aLlRpgRFd~~I~v~~P 335 (613)
|||||++.+...... ..... ..............+|+++|. ....+..+.+ |++.++.++.+
T Consensus 82 iiiDei~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQE-------ALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHHH-------HHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 999999999543211 11000 000111123455788888886 3344444444 88888887655
No 178
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.25 E-value=3.6e-11 Score=135.89 Aligned_cols=207 Identities=22% Similarity=0.278 Sum_probs=125.2
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhh
Q 007190 164 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEE 240 (613)
Q Consensus 164 ~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~ 240 (613)
+..+|++++|.+.+.+.+.+.+..+.. .+..|||+|++|||||++|++|+... +.||+.++|..+.+
T Consensus 191 ~~~~~~~liG~s~~~~~~~~~~~~~a~----------~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~ 260 (534)
T TIGR01817 191 RSGKEDGIIGKSPAMRQVVDQARVVAR----------SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE 260 (534)
T ss_pred ccCccCceEECCHHHHHHHHHHHHHhC----------cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH
Confidence 345899999999998888887765443 23369999999999999999999874 57999999987744
Q ss_pred hhh-----hhhH-------HHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhcc--cc------
Q 007190 241 MFV-----GVGA-------RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF--EQ------ 300 (613)
Q Consensus 241 ~~~-----g~~~-------~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~--~~------ 300 (613)
... |... ......|..+ ...+|||||||.+. ......|+..++.- ..
T Consensus 261 ~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~----------~~~Q~~Ll~~l~~~~~~~~~~~~~ 327 (534)
T TIGR01817 261 TLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEIS----------PAFQAKLLRVLQEGEFERVGGNRT 327 (534)
T ss_pred HHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCC----------HHHHHHHHHHHhcCcEEECCCCce
Confidence 221 1000 0001122222 23599999999993 33445566555431 11
Q ss_pred -CCceEEEeecCCCCCCChhhcCCCccce-------EEEccCCCHhhH----HHHHHHHhccC----CC---CChhcHHH
Q 007190 301 -NEGIILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGR----QEILELYLQDK----PL---ADDVDVKA 361 (613)
Q Consensus 301 -~~~ViVIaaTN~p~~Ld~aLlRpgRFd~-------~I~v~~Pd~~~R----~~IL~~~l~~~----~l---~~d~dl~~ 361 (613)
..++.+|++|+.. +.. +...|+|.. .+.+..|...+| ..++++++.+. .. -++..+..
T Consensus 328 ~~~~~riI~~s~~~--l~~-~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~ 404 (534)
T TIGR01817 328 LKVDVRLVAATNRD--LEE-AVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRV 404 (534)
T ss_pred EeecEEEEEeCCCC--HHH-HHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 1247888888754 222 222344422 334445555544 44566665432 11 12223455
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 007190 362 IARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELE 399 (613)
Q Consensus 362 la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~ 399 (613)
|....---+.++|++++++++..+ ....|+.+|+.
T Consensus 405 L~~~~WPGNvrEL~~v~~~a~~~~---~~~~I~~~~l~ 439 (534)
T TIGR01817 405 LMSCKWPGNVRELENCLERTATLS---RSGTITRSDFS 439 (534)
T ss_pred HHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCc
Confidence 555542235678888888776543 45678888864
No 179
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.24 E-value=1.3e-10 Score=123.30 Aligned_cols=153 Identities=20% Similarity=0.325 Sum_probs=108.2
Q ss_pred CCCCceEEEEccCCChHHHHHHHHHHhcCCC------------------------eeEeecchhhhhhhhhhHHHHHHHH
Q 007190 199 GKLPKGILLTGAPGTGKTLLAKAIAGEAGVP------------------------FFYRAGSEFEEMFVGVGARRVRSLF 254 (613)
Q Consensus 199 ~~~p~gvLL~GPpGTGKT~LAralA~e~~~p------------------------fi~is~s~~~~~~~g~~~~~vr~lf 254 (613)
++.|.++||+||+|+|||++|+++|+.+.+. ++.+...+- . ...+...+|++.
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~--~~i~id~iR~l~ 95 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-D--KTIKVDQVRELV 95 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-C--CCCCHHHHHHHH
Confidence 6788899999999999999999999987542 111111000 0 011234566665
Q ss_pred HHHHc----CCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCCCCChhhcCCCccceEE
Q 007190 255 QAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHI 330 (613)
Q Consensus 255 ~~A~~----~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I 330 (613)
+.+.. ....|++||++|.+ .....|.||+.|+. +..++++|.+|+.++.|.|.+++ |+ ..+
T Consensus 96 ~~~~~~~~~~~~kv~iI~~a~~m----------~~~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~S--Rc-~~~ 160 (328)
T PRK05707 96 SFVVQTAQLGGRKVVLIEPAEAM----------NRNAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKS--RC-QQQ 160 (328)
T ss_pred HHHhhccccCCCeEEEECChhhC----------CHHHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHh--hc-eee
Confidence 55432 34569999999999 46788999999995 55678888999999999999998 88 568
Q ss_pred EccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHH
Q 007190 331 VVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGAD 373 (613)
Q Consensus 331 ~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgad 373 (613)
.|++|+.++-.+.|+..... ..+.+...+++.+.| ++..
T Consensus 161 ~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~G-sp~~ 199 (328)
T PRK05707 161 ACPLPSNEESLQWLQQALPE---SDERERIELLTLAGG-SPLR 199 (328)
T ss_pred eCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCC-CHHH
Confidence 99999999888888765421 233344556666665 4433
No 180
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.24 E-value=7.3e-11 Score=125.34 Aligned_cols=192 Identities=24% Similarity=0.277 Sum_probs=114.8
Q ss_pred CCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhh--
Q 007190 167 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM-- 241 (613)
Q Consensus 167 ~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~-- 241 (613)
-|++++|.+...+.+.+.+..+.. .+..|||+|++||||+++|+++.... +.||+.++|..+.+.
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~----------~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAP----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhC----------CCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 478899999998888887765432 23469999999999999999998754 479999999886432
Q ss_pred ---hhhhhH-------HHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhcc--cc-------CC
Q 007190 242 ---FVGVGA-------RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF--EQ-------NE 302 (613)
Q Consensus 242 ---~~g~~~-------~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~--~~-------~~ 302 (613)
+.|... ......|..+. ...|||||+|.+. ......|+..++.- .. +.
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a~---gGtL~l~~i~~L~----------~~~Q~~L~~~l~~~~~~~~g~~~~~~~ 140 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERAD---GGTLFLDELATAP----------MLVQEKLLRVIEYGELERVGGSQPLQV 140 (326)
T ss_pred HHHHccccccccCCcccccCCchhccC---CCeEEeCChhhCC----------HHHHHHHHHHHhcCcEEeCCCCceeec
Confidence 111100 01122343333 3489999999993 33445555555431 11 13
Q ss_pred ceEEEeecCCC-------CCCChhhcCCCccceEEEccCCCHhhHHH----HHHHHhcc----CCCC-----ChhcHHHH
Q 007190 303 GIILMAATNLP-------DILDPALTRPGRFDRHIVVPNPDVRGRQE----ILELYLQD----KPLA-----DDVDVKAI 362 (613)
Q Consensus 303 ~ViVIaaTN~p-------~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~----IL~~~l~~----~~l~-----~d~dl~~l 362 (613)
++.+|++|+.. ..+.+.|.. ||. .+.+..|...+|.+ ++.+|+.. .... +...+..|
T Consensus 141 ~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L 217 (326)
T PRK11608 141 NVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETL 217 (326)
T ss_pred cEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHH
Confidence 57888888764 234455554 552 34555666666643 55555432 1111 12223444
Q ss_pred HhcCCCCCHHHHHHHHHHHHHH
Q 007190 363 ARGTPGFNGADLANLVNIAAIK 384 (613)
Q Consensus 363 a~~t~G~sgadL~~lv~~Aa~~ 384 (613)
....---+-++|+++++++...
T Consensus 218 ~~y~WPGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 218 LNYRWPGNIRELKNVVERSVYR 239 (326)
T ss_pred HhCCCCcHHHHHHHHHHHHHHh
Confidence 4433222456777777776643
No 181
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.23 E-value=1.2e-10 Score=131.04 Aligned_cols=206 Identities=21% Similarity=0.294 Sum_probs=121.2
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhh
Q 007190 164 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEE 240 (613)
Q Consensus 164 ~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~ 240 (613)
...+|++++|.+...+.+.+.+..+.. .+..|||+|++||||+++|+++.... +.||+.++|+.+.+
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~----------~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~ 268 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAM----------LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD 268 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhC----------CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH
Confidence 345899999999987777776654322 22359999999999999999997654 47999999988744
Q ss_pred hh-----hhhhH-------HHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhc--cc-------
Q 007190 241 MF-----VGVGA-------RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDG--FE------- 299 (613)
Q Consensus 241 ~~-----~g~~~-------~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg--~~------- 299 (613)
.. .|... .....+|+.|. ...|||||||.+. ......|+..++. |.
T Consensus 269 ~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L~----------~~~Q~~Ll~~l~~~~~~~~g~~~~ 335 (520)
T PRK10820 269 DVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEMS----------PRMQAKLLRFLNDGTFRRVGEDHE 335 (520)
T ss_pred HHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhCC----------HHHHHHHHHHHhcCCcccCCCCcc
Confidence 21 11110 11123455443 3489999999993 2333455555442 11
Q ss_pred cCCceEEEeecCCCC-------CCChhhcCCCccceEEEccCCCHhhHHH----HHHHHhc----cCCCC-Chhc---HH
Q 007190 300 QNEGIILMAATNLPD-------ILDPALTRPGRFDRHIVVPNPDVRGRQE----ILELYLQ----DKPLA-DDVD---VK 360 (613)
Q Consensus 300 ~~~~ViVIaaTN~p~-------~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~----IL~~~l~----~~~l~-~d~d---l~ 360 (613)
...++.||++|+.+- .+.+.|.. |+. .+.+..|...+|.+ ++.+++. +.... ..++ +.
T Consensus 336 ~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~ 412 (520)
T PRK10820 336 VHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNT 412 (520)
T ss_pred eeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHH
Confidence 123578888887642 23333443 443 46677777777653 3334432 22211 1222 34
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHH
Q 007190 361 AIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATEL 398 (613)
Q Consensus 361 ~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl 398 (613)
.|....---+-++|++++.+|... .....|+.+|+
T Consensus 413 ~L~~y~WPGNvreL~nvl~~a~~~---~~~~~i~~~~~ 447 (520)
T PRK10820 413 VLTRYGWPGNVRQLKNAIYRALTQ---LEGYELRPQDI 447 (520)
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHh---CCCCcccHHHc
Confidence 444432112446677777666543 34456777765
No 182
>PRK04132 replication factor C small subunit; Provisional
Probab=99.23 E-value=2.1e-10 Score=133.69 Aligned_cols=170 Identities=18% Similarity=0.172 Sum_probs=126.6
Q ss_pred EEEEc--cCCChHHHHHHHHHHhc-----CCCeeEeecchhhhhhhhhhHHHHHHHHHHHHcC------CCeEEEEcCCC
Q 007190 205 ILLTG--APGTGKTLLAKAIAGEA-----GVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKK------APCIIFIDEID 271 (613)
Q Consensus 205 vLL~G--PpGTGKT~LAralA~e~-----~~pfi~is~s~~~~~~~g~~~~~vr~lf~~A~~~------~P~ILfIDEiD 271 (613)
-+..| |++.|||++|+++|+++ +.+++.+|+++... ...++++...+... ...|+||||+|
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDEaD 640 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEAD 640 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEECcc
Confidence 45568 99999999999999997 56899999998532 22455555443322 23699999999
Q ss_pred ccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccC
Q 007190 272 AVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK 351 (613)
Q Consensus 272 ~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~ 351 (613)
.+ .....+.|+..|+. +...+.+|.+||.+..+.+++++ |+ ..+.|++|+.++....++..+.+.
T Consensus 641 ~L----------t~~AQnALLk~lEe--p~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I~~~E 705 (846)
T PRK04132 641 AL----------TQDAQQALRRTMEM--FSSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYIAENE 705 (846)
T ss_pred cC----------CHHHHHHHHHHhhC--CCCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHHHHhc
Confidence 99 34577889999985 34567888899999999999998 88 788999999999999999888765
Q ss_pred CCC-ChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 007190 352 PLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFA 401 (613)
Q Consensus 352 ~l~-~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A 401 (613)
++. ++..+..++..+.| +.+...++++.++. ....||.+++...
T Consensus 706 gi~i~~e~L~~Ia~~s~G-DlR~AIn~Lq~~~~-----~~~~It~~~V~~~ 750 (846)
T PRK04132 706 GLELTEEGLQAILYIAEG-DMRRAINILQAAAA-----LDDKITDENVFLV 750 (846)
T ss_pred CCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH-----hcCCCCHHHHHHH
Confidence 544 45568889988877 55555566654432 1246888776543
No 183
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=5.3e-11 Score=136.22 Aligned_cols=163 Identities=26% Similarity=0.342 Sum_probs=117.2
Q ss_pred cccCCCHHHHHHHHHHHHH----hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcC---CCeeEeecchhhhh
Q 007190 169 KDVKGCDDAKQELVEVVEY----LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG---VPFFYRAGSEFEEM 241 (613)
Q Consensus 169 ~dV~G~~e~k~~L~eiv~~----l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~---~pfi~is~s~~~~~ 241 (613)
+.|+|++++...+.+.+.. |.+|. +|-..+||.||+|+|||-||+++|..+. .+++.+++|+|.+.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~-------rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~Ek 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPN-------RPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEK 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCC-------CCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHH
Confidence 4589999999999988875 33332 2334688899999999999999999986 78999999999775
Q ss_pred h-----hhhhHHHH-----HHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhcccc---------CC
Q 007190 242 F-----VGVGARRV-----RSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQ---------NE 302 (613)
Q Consensus 242 ~-----~g~~~~~v-----r~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~---------~~ 302 (613)
+ .|.....+ ..+-+..+++..|||++|||+.- ...++|-||+.||.-.- -.
T Consensus 564 HsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKA----------HpdV~nilLQVlDdGrLTD~~Gr~VdFr 633 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKA----------HPDVFNLLLQVLDDGRLTDGQGRTVDFR 633 (786)
T ss_pred HHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhc----------CHHHHHHHHHHhcCCeeecCCCCEEecc
Confidence 3 22221111 12444456666799999999876 56789999999885211 12
Q ss_pred ceEEEeecCCCC----------------------------CCChhhcCCCccceEEEccCCCHhhHHHHHHHHhcc
Q 007190 303 GIILMAATNLPD----------------------------ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQD 350 (613)
Q Consensus 303 ~ViVIaaTN~p~----------------------------~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~ 350 (613)
+.++|.|||--. .+.|.++. |+|.+|.|.+.+.+...+|+...++.
T Consensus 634 NtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~~ 707 (786)
T COG0542 634 NTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLNR 707 (786)
T ss_pred eeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHHH
Confidence 478899998321 12345555 88888888888888888887777643
No 184
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.23 E-value=1.2e-10 Score=134.36 Aligned_cols=209 Identities=20% Similarity=0.263 Sum_probs=126.5
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhh
Q 007190 165 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM 241 (613)
Q Consensus 165 ~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~ 241 (613)
..+|++++|.+.+.+++.+.+..+.. .+..|||+|++||||+++|+++.... +.||+.++|..+...
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a~----------~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAAK----------SSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHhC----------cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 34799999999988887776654332 22359999999999999999998865 579999999876431
Q ss_pred -----hhhhh----HHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccc-----c----CCc
Q 007190 242 -----FVGVG----ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE-----Q----NEG 303 (613)
Q Consensus 242 -----~~g~~----~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~-----~----~~~ 303 (613)
+.|.. .......|+.| ...+||||||+.+. ......|+..++.-. . ..+
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l~----------~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~ 457 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLS----------PELQSALLQVLKTGVITRLDSRRLIPVD 457 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhCC----------HHHHHHHHHHHhcCcEEeCCCCceEEee
Confidence 11210 00001123322 24589999999992 334445555554211 0 125
Q ss_pred eEEEeecCCCCCCChhhcCCCccce-------EEEccCCCHhhHHH----HHHHHhccC----C--C-CChhcHHHHHhc
Q 007190 304 IILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGRQE----ILELYLQDK----P--L-ADDVDVKAIARG 365 (613)
Q Consensus 304 ViVIaaTN~p~~Ld~aLlRpgRFd~-------~I~v~~Pd~~~R~~----IL~~~l~~~----~--l-~~d~dl~~la~~ 365 (613)
+.+|+||+..- . .+...|+|.. .+.+..|...+|.+ ++++++.+. . . -++..+..|...
T Consensus 458 ~riI~~t~~~l--~-~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y 534 (638)
T PRK11388 458 VRVIATTTADL--A-MLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSY 534 (638)
T ss_pred EEEEEeccCCH--H-HHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcC
Confidence 78999998642 1 2223344432 56677777777743 445554321 1 1 123335555555
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 007190 366 TPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAK 402 (613)
Q Consensus 366 t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A~ 402 (613)
.---+.++|+++++.+... .....|+.+|+...+
T Consensus 535 ~WPGNvreL~~~l~~~~~~---~~~~~i~~~~lp~~~ 568 (638)
T PRK11388 535 RWPGNDFELRSVIENLALS---SDNGRIRLSDLPEHL 568 (638)
T ss_pred CCCChHHHHHHHHHHHHHh---CCCCeecHHHCchhh
Confidence 4223567888888876654 244578888775443
No 185
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.22 E-value=2.3e-10 Score=120.51 Aligned_cols=65 Identities=40% Similarity=0.583 Sum_probs=51.9
Q ss_pred CCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcC--CCeeEeecchh
Q 007190 167 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG--VPFFYRAGSEF 238 (613)
Q Consensus 167 ~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~--~pfi~is~s~~ 238 (613)
..+.++|+.++++..--+++.++..+. -.+++||.||||||||.||-++|+++| +||+.+++|++
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K~-------aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEi 88 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGKI-------AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEI 88 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT---------TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG
T ss_pred ccccccChHHHHHHHHHHHHHHhcccc-------cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEccccee
Confidence 356889999999999888887776432 347999999999999999999999997 89999998887
No 186
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.22 E-value=1.3e-10 Score=130.57 Aligned_cols=193 Identities=24% Similarity=0.287 Sum_probs=120.0
Q ss_pred CCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhhhh
Q 007190 167 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV 243 (613)
Q Consensus 167 ~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~~~ 243 (613)
++++++|.+...+.+.+.+..+.. .+.+|||+|++|||||++|+++.... +.||+.++|..+.+...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~----------~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAA----------SDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhC----------CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 688999999999988888875433 23479999999999999999998864 57999999988744211
Q ss_pred -----hhhH-------HHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccc---------cCC
Q 007190 244 -----GVGA-------RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QNE 302 (613)
Q Consensus 244 -----g~~~-------~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~---------~~~ 302 (613)
|... ......|..|. ...|||||||.+. ......|+..++.-. ...
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a~---gGtL~ldeI~~L~----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 321 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGELP----------LALQAKLLRVLQYGEIQRVGSDRSLRV 321 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhcC---CCEEEecChhhCC----------HHHHHHHHHHHhcCCEeeCCCCcceec
Confidence 1100 00112344443 3489999999993 344555665554311 123
Q ss_pred ceEEEeecCCCCCCChhhcCCCccce-------EEEccCCCHhhHHH----HHHHHhccC----C---C-CChhcHHHHH
Q 007190 303 GIILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGRQE----ILELYLQDK----P---L-ADDVDVKAIA 363 (613)
Q Consensus 303 ~ViVIaaTN~p~~Ld~aLlRpgRFd~-------~I~v~~Pd~~~R~~----IL~~~l~~~----~---l-~~d~dl~~la 363 (613)
++.+|++||..- . .+...|+|.. .+.+..|...+|.+ ++++++++. . . -++..+..|.
T Consensus 322 ~~RiI~~t~~~l--~-~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~ 398 (509)
T PRK05022 322 DVRVIAATNRDL--R-EEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALL 398 (509)
T ss_pred ceEEEEecCCCH--H-HHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Confidence 578999998642 1 1222233332 45667777777754 444444321 1 1 1222244455
Q ss_pred hcCCCCCHHHHHHHHHHHHHHH
Q 007190 364 RGTPGFNGADLANLVNIAAIKA 385 (613)
Q Consensus 364 ~~t~G~sgadL~~lv~~Aa~~A 385 (613)
...---+.++|++++++|+..+
T Consensus 399 ~y~WPGNvrEL~~~i~ra~~~~ 420 (509)
T PRK05022 399 AYDWPGNVRELEHVISRAALLA 420 (509)
T ss_pred hCCCCCcHHHHHHHHHHHHHhc
Confidence 4432236688889998887765
No 187
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.22 E-value=9.5e-11 Score=124.61 Aligned_cols=149 Identities=17% Similarity=0.172 Sum_probs=110.1
Q ss_pred CCcccCC-CHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCC----------------
Q 007190 167 TFKDVKG-CDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP---------------- 229 (613)
Q Consensus 167 ~f~dV~G-~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~p---------------- 229 (613)
.|+.|.| ++.+++.|+..+. .++.|..+||+||+|+|||++|+++|+...++
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~-----------~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIA-----------KNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 5889999 8889988888774 36788889999999999999999999986432
Q ss_pred --------eeEeecchhhhhhhhhhHHHHHHHHHHHH----cCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhc
Q 007190 230 --------FFYRAGSEFEEMFVGVGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDG 297 (613)
Q Consensus 230 --------fi~is~s~~~~~~~g~~~~~vr~lf~~A~----~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg 297 (613)
+..+... .. ..+...++++.+.+. .....|++|||+|.+ .....|.||+.|+.
T Consensus 72 ~~~~~hpD~~~i~~~---~~--~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~----------~~~a~NaLLK~LEE 136 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---GQ--SIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM----------TASAANSLLKFLEE 136 (329)
T ss_pred HhcCCCCCEEEeccc---cc--cCCHHHHHHHHHHHhhCCcccCceEEEeehHhhh----------CHHHHHHHHHHhcC
Confidence 1111110 00 012235555555443 223469999999998 45688999999994
Q ss_pred cccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHH
Q 007190 298 FEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILEL 346 (613)
Q Consensus 298 ~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~ 346 (613)
+..++++|.+|+.+..|.|.+++ |+ ..+++++|+.++...+++.
T Consensus 137 --Pp~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 137 --PSGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred --CCCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 55667777788888999999988 88 7889999998887777753
No 188
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.22 E-value=1.8e-11 Score=120.37 Aligned_cols=119 Identities=29% Similarity=0.443 Sum_probs=69.1
Q ss_pred CCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcC-------------------
Q 007190 167 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG------------------- 227 (613)
Q Consensus 167 ~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~------------------- 227 (613)
.|+||+|++.+|..|.-... | ..++||+||||||||++|+++..-+.
T Consensus 1 Df~dI~GQe~aKrAL~iAAa-----------G---~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA-----------G---GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH-----------C---C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred ChhhhcCcHHHHHHHHHHHc-----------C---CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence 48999999999999976553 3 35899999999999999999987431
Q ss_pred ---------CCeeEeecchhhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhcc
Q 007190 228 ---------VPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF 298 (613)
Q Consensus 228 ---------~pfi~is~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~ 298 (613)
.||.....+.-....+|.+....-..+..|.. .|||+||+-.+ ...++..|+.-|+.-
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~---GVLflDE~~ef----------~~~vld~Lr~ple~g 133 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHR---GVLFLDELNEF----------DRSVLDALRQPLEDG 133 (206)
T ss_dssp S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTT---SEEEECETTTS-----------HHHHHHHHHHHHHS
T ss_pred CCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcC---CEEEechhhhc----------CHHHHHHHHHHHHCC
Confidence 12222221111111222211111112222333 39999999877 467888888877642
Q ss_pred c-----------cCCceEEEeecCC
Q 007190 299 E-----------QNEGIILMAATNL 312 (613)
Q Consensus 299 ~-----------~~~~ViVIaaTN~ 312 (613)
. -..++++|+|+|.
T Consensus 134 ~v~i~R~~~~~~~Pa~f~lv~a~NP 158 (206)
T PF01078_consen 134 EVTISRAGGSVTYPARFLLVAAMNP 158 (206)
T ss_dssp BEEEEETTEEEEEB--EEEEEEE-S
T ss_pred eEEEEECCceEEEecccEEEEEecc
Confidence 1 1235889999984
No 189
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.20 E-value=3.5e-10 Score=128.85 Aligned_cols=188 Identities=22% Similarity=0.277 Sum_probs=126.3
Q ss_pred eEEEEccCCChHHHHHHHHHHhcC--CCeeEeecchhhhhhhhhhH--HHHH--------HHHHHHHcCCCeEEEEcCCC
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAG--VPFFYRAGSEFEEMFVGVGA--RRVR--------SLFQAAKKKAPCIIFIDEID 271 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~--~pfi~is~s~~~~~~~g~~~--~~vr--------~lf~~A~~~~P~ILfIDEiD 271 (613)
+|||.|+||||||++|++++..++ .||+.+..+.......|... ..+. .++..| ...+||||||+
T Consensus 18 ~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A---~~GvL~lDEi~ 94 (589)
T TIGR02031 18 GVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEA---PRGVLYVDMAN 94 (589)
T ss_pred eEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeC---CCCcEeccchh
Confidence 899999999999999999999775 47888875433333333210 0000 011111 12499999999
Q ss_pred ccccCCccCCcccHHHHHHHHHHhhccc-----------cCCceEEEeecCCCC---CCChhhcCCCccceEEEcc-CCC
Q 007190 272 AVGSTRKQWEGHTKKTLHQLLVEMDGFE-----------QNEGIILMAATNLPD---ILDPALTRPGRFDRHIVVP-NPD 336 (613)
Q Consensus 272 ~l~~~r~~~~~~~~~~l~~LL~~ldg~~-----------~~~~ViVIaaTN~p~---~Ld~aLlRpgRFd~~I~v~-~Pd 336 (613)
.+ ...+++.|+..|+.-. ....+.||+|+|..+ .|+++|+. ||+.++.+. .|+
T Consensus 95 rl----------~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~~ 162 (589)
T TIGR02031 95 LL----------DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVAS 162 (589)
T ss_pred hC----------CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCCCC
Confidence 99 3456777777775311 124588999999765 78899998 999988776 467
Q ss_pred HhhHHHHHHHHhccC-------------------------CCCChhcHHHHHhcC--CCCC-HHHHHHHHHHHHHHHHHh
Q 007190 337 VRGRQEILELYLQDK-------------------------PLADDVDVKAIARGT--PGFN-GADLANLVNIAAIKAAVD 388 (613)
Q Consensus 337 ~~~R~~IL~~~l~~~-------------------------~l~~d~dl~~la~~t--~G~s-gadL~~lv~~Aa~~A~~~ 388 (613)
.++|.+|++.++... .+ ++..+..++..+ -|.+ .+.-..+++.|...|+.+
T Consensus 163 ~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i-~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal~ 241 (589)
T TIGR02031 163 QDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTI-SAEQVKELVLTAASLGISGHRADLFAVRAAKAHAALH 241 (589)
T ss_pred HHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccC-CHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHh
Confidence 788999988765211 11 111122222211 2333 455557788888999999
Q ss_pred CCCccCHHHHHHHHHHHhc
Q 007190 389 GGEKLTATELEFAKDRILM 407 (613)
Q Consensus 389 ~~~~It~~dl~~A~~~v~~ 407 (613)
+++.|+.+|+..|..-++.
T Consensus 242 gr~~V~~~Dv~~a~~lvl~ 260 (589)
T TIGR02031 242 GRTEVTEEDLKLAVELVLL 260 (589)
T ss_pred CCCCCCHHHHHHHHHHHhh
Confidence 9999999999999988864
No 190
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.18 E-value=3e-10 Score=123.61 Aligned_cols=141 Identities=26% Similarity=0.408 Sum_probs=87.8
Q ss_pred CcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCC-------eeEee----cc
Q 007190 168 FKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP-------FFYRA----GS 236 (613)
Q Consensus 168 f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~p-------fi~is----~s 236 (613)
++++.+.++..+.+...+ . ..++++|+||||||||++|+.+|..+... ++.++ ..
T Consensus 174 l~d~~i~e~~le~l~~~L---~-----------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETILKRL---T-----------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHHHHH---h-----------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 667777666654443332 2 13579999999999999999999987431 22222 22
Q ss_pred hhhhhhh--hhhHH----HHHHHHHHHHcC--CCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhh------------
Q 007190 237 EFEEMFV--GVGAR----RVRSLFQAAKKK--APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMD------------ 296 (613)
Q Consensus 237 ~~~~~~~--g~~~~----~vr~lf~~A~~~--~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ld------------ 296 (613)
+++..+. +.+.. .+.++...|+.. .|++||||||+.... .+.+..++..|+
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani---------~kiFGel~~lLE~~~rg~~~~v~l 310 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANL---------SKVFGEVMMLMEHDKRGENWSVPL 310 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCH---------HHhhhhhhhhccccccccccceee
Confidence 3333221 11111 233445566543 589999999997632 222223232222
Q ss_pred --------ccccCCceEEEeecCCCC----CCChhhcCCCccceEEEccC
Q 007190 297 --------GFEQNEGIILMAATNLPD----ILDPALTRPGRFDRHIVVPN 334 (613)
Q Consensus 297 --------g~~~~~~ViVIaaTN~p~----~Ld~aLlRpgRFd~~I~v~~ 334 (613)
.|....++.||||+|..+ .+|.|++| || ..|++.+
T Consensus 311 ~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF-~fi~i~p 357 (459)
T PRK11331 311 TYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RF-SFIDIEP 357 (459)
T ss_pred eccccccccccCCCCeEEEEecCccccchhhccHHHHh--hh-heEEecC
Confidence 345567899999999987 79999999 99 4566654
No 191
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.17 E-value=6.6e-11 Score=127.03 Aligned_cols=195 Identities=26% Similarity=0.344 Sum_probs=120.5
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHh----cCCCeeEeecchhhh
Q 007190 165 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGE----AGVPFFYRAGSEFEE 240 (613)
Q Consensus 165 ~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e----~~~pfi~is~s~~~~ 240 (613)
...|++++|.+...+++++.+..+.. ....||++|++||||+++|+.++.. .+.||+.+||+.+.+
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~~ap----------~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~e 143 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKAYAP----------SGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSE 143 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHhhCC----------CCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCc
Confidence 35699999999998888887764222 2247999999999999999999753 367999999998755
Q ss_pred hhhhh------------hHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhcc---------c
Q 007190 241 MFVGV------------GARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF---------E 299 (613)
Q Consensus 241 ~~~g~------------~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~---------~ 299 (613)
..... ....-..+|+.|..+ +||+|||+.+.. .....|+..+|.- .
T Consensus 144 n~~~~eLFG~~kGaftGa~~~k~Glfe~A~GG---tLfLDEI~~LP~----------~~Q~kLl~~le~g~~~rvG~~~~ 210 (403)
T COG1221 144 NLQEAELFGHEKGAFTGAQGGKAGLFEQANGG---TLFLDEIHRLPP----------EGQEKLLRVLEEGEYRRVGGSQP 210 (403)
T ss_pred CHHHHHHhccccceeecccCCcCchheecCCC---EEehhhhhhCCH----------hHHHHHHHHHHcCceEecCCCCC
Confidence 32210 122334466665544 999999999832 3344555555531 1
Q ss_pred cCCceEEEeecCCCCCCChhhcC-CCccc--eEEEccCCCHhhHHH----HHHHHh----ccCCCCC--hh--cHHHHHh
Q 007190 300 QNEGIILMAATNLPDILDPALTR-PGRFD--RHIVVPNPDVRGRQE----ILELYL----QDKPLAD--DV--DVKAIAR 364 (613)
Q Consensus 300 ~~~~ViVIaaTN~p~~Ld~aLlR-pgRFd--~~I~v~~Pd~~~R~~----IL~~~l----~~~~l~~--d~--dl~~la~ 364 (613)
....|.+|+|||. .++.+++. ..-+. ..+.+.+|..++|.. ++++++ ++..... +. .+..+-.
T Consensus 211 ~~~dVRli~AT~~--~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~ 288 (403)
T COG1221 211 RPVDVRLICATTE--DLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLA 288 (403)
T ss_pred cCCCceeeecccc--CHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh
Confidence 2356899999984 34433332 01111 134555666666643 444444 3333321 11 1233333
Q ss_pred -cCCCCCHHHHHHHHHHHHHHH
Q 007190 365 -GTPGFNGADLANLVNIAAIKA 385 (613)
Q Consensus 365 -~t~G~sgadL~~lv~~Aa~~A 385 (613)
..+| +-++|+|+++.++..+
T Consensus 289 y~~pG-NirELkN~Ve~~~~~~ 309 (403)
T COG1221 289 YDWPG-NIRELKNLVERAVAQA 309 (403)
T ss_pred CCCCC-cHHHHHHHHHHHHHHh
Confidence 3344 6788999998887665
No 192
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.17 E-value=4.5e-11 Score=110.64 Aligned_cols=110 Identities=30% Similarity=0.395 Sum_probs=70.2
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhh--hhhhhHHH------HHHHHHHHHcCCCeEEEEcCCCcccc
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM--FVGVGARR------VRSLFQAAKKKAPCIIFIDEIDAVGS 275 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~--~~g~~~~~------vr~lf~~A~~~~P~ILfIDEiD~l~~ 275 (613)
+|||+||||||||++|+.+|+.++.+++.++++...+. +.|.-.-. ....+..+.. .+++++|||++..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~-~~~il~lDEin~a-- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR-KGGILVLDEINRA-- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH-EEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc-ceeEEEECCcccC--
Confidence 58999999999999999999999999999988764321 11110000 0000000101 4689999999987
Q ss_pred CCccCCcccHHHHHHHHHHhhcc----------c-cCC------ceEEEeecCCCC----CCChhhcCCCcc
Q 007190 276 TRKQWEGHTKKTLHQLLVEMDGF----------E-QNE------GIILMAATNLPD----ILDPALTRPGRF 326 (613)
Q Consensus 276 ~r~~~~~~~~~~l~~LL~~ldg~----------~-~~~------~ViVIaaTN~p~----~Ld~aLlRpgRF 326 (613)
...++..|+..++.- . ... ++.+|+|+|..+ .+++++++ ||
T Consensus 78 --------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 78 --------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp ---------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred --------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 234555555555431 0 111 489999999988 89999999 87
No 193
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.15 E-value=4.5e-10 Score=130.67 Aligned_cols=193 Identities=20% Similarity=0.270 Sum_probs=119.5
Q ss_pred CCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhh-
Q 007190 166 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM- 241 (613)
Q Consensus 166 ~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~- 241 (613)
.+|++++|.+.+.+.+.+.+..+... +.+|||+|++|||||++|++|.... +.||+.++|..+...
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~----------~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~ 442 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQS----------DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGL 442 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCC----------CCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhH
Confidence 57999999999999988877754332 2369999999999999999998854 579999999876332
Q ss_pred ----hhhhh-------HHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccc---------cC
Q 007190 242 ----FVGVG-------ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QN 301 (613)
Q Consensus 242 ----~~g~~-------~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~---------~~ 301 (613)
..|.. .......|..+. ..+||||||+.+. ......|+..++.-. ..
T Consensus 443 ~~~~lfg~~~~~~~g~~~~~~g~le~a~---~GtL~Ldei~~L~----------~~~Q~~L~~~l~~~~~~~~g~~~~~~ 509 (686)
T PRK15429 443 LESDLFGHERGAFTGASAQRIGRFELAD---KSSLFLDEVGDMP----------LELQPKLLRVLQEQEFERLGSNKIIQ 509 (686)
T ss_pred hhhhhcCcccccccccccchhhHHHhcC---CCeEEEechhhCC----------HHHHHHHHHHHHhCCEEeCCCCCccc
Confidence 11110 011123344443 3599999999992 344555555554311 12
Q ss_pred CceEEEeecCCCCCCChhhcCCCccce-------EEEccCCCHhhHHH----HHHHHhccC----C--C--CChhcHHHH
Q 007190 302 EGIILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGRQE----ILELYLQDK----P--L--ADDVDVKAI 362 (613)
Q Consensus 302 ~~ViVIaaTN~p~~Ld~aLlRpgRFd~-------~I~v~~Pd~~~R~~----IL~~~l~~~----~--l--~~d~dl~~l 362 (613)
.++.+|++|+.+- . .+...|+|.. .+.+..|...+|.+ ++++++.+. . . -+...+..|
T Consensus 510 ~~~RiI~~t~~~l--~-~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L 586 (686)
T PRK15429 510 TDVRLIAATNRDL--K-KMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTL 586 (686)
T ss_pred ceEEEEEeCCCCH--H-HHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHH
Confidence 4578999998642 1 1112233332 56677788877765 445554321 1 1 122334555
Q ss_pred HhcCCCCCHHHHHHHHHHHHHH
Q 007190 363 ARGTPGFNGADLANLVNIAAIK 384 (613)
Q Consensus 363 a~~t~G~sgadL~~lv~~Aa~~ 384 (613)
....---+-++|++++++|+..
T Consensus 587 ~~y~WPGNvrEL~~~i~~a~~~ 608 (686)
T PRK15429 587 SNMEWPGNVRELENVIERAVLL 608 (686)
T ss_pred HhCCCCCcHHHHHHHHHHHHHh
Confidence 4443223568888888877754
No 194
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.13 E-value=1e-09 Score=122.04 Aligned_cols=209 Identities=24% Similarity=0.306 Sum_probs=128.9
Q ss_pred CCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcC------------------
Q 007190 166 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG------------------ 227 (613)
Q Consensus 166 ~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~------------------ 227 (613)
.+|.++.|+..+++.+.-.+ .....++|+||||+|||++++.+++...
T Consensus 188 ~d~~~v~Gq~~~~~al~laa--------------~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITA--------------AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred cCeEEEECcHHHHhhhheec--------------cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 48999999988776542111 1235799999999999999999987432
Q ss_pred ----------CCeeEeecchhhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhc
Q 007190 228 ----------VPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDG 297 (613)
Q Consensus 228 ----------~pfi~is~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg 297 (613)
.||..-..+.-....+|.+...-...+..|..+ +|||||++.+ ...++..|++.|+.
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gG---vLfLDEi~e~----------~~~~~~~L~~~LE~ 320 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNG---VLFLDELPEF----------ERRTLDALREPIES 320 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCC---EEecCCchhC----------CHHHHHHHHHHHHc
Confidence 111111100001112232222223455555554 9999999887 34566666666643
Q ss_pred cc-----------cCCceEEEeecCCCC---------------------CCChhhcCCCccceEEEccCCCHh-------
Q 007190 298 FE-----------QNEGIILMAATNLPD---------------------ILDPALTRPGRFDRHIVVPNPDVR------- 338 (613)
Q Consensus 298 ~~-----------~~~~ViVIaaTN~p~---------------------~Ld~aLlRpgRFd~~I~v~~Pd~~------- 338 (613)
-. ...++.+|+|+|... .|..+++. |||.++.++.|+.+
T Consensus 321 g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l~~~~~ 398 (506)
T PRK09862 321 GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGILSKTVV 398 (506)
T ss_pred CcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHHhcccC
Confidence 11 134689999999752 36668888 99999999988532
Q ss_pred ---hHHHHHHHHh--------ccCCCCChh---cH-----------H--HHHhcCCCCCHHHHHHHHHHHHHHHHHhCCC
Q 007190 339 ---GRQEILELYL--------QDKPLADDV---DV-----------K--AIARGTPGFNGADLANLVNIAAIKAAVDGGE 391 (613)
Q Consensus 339 ---~R~~IL~~~l--------~~~~l~~d~---dl-----------~--~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~ 391 (613)
....|-+... ++..+.... .+ . .-+...-|.|.+....+++-|...|..++++
T Consensus 399 ~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~g~~ 478 (506)
T PRK09862 399 PGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADIDQSD 478 (506)
T ss_pred CCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 1112221110 000001000 01 1 1112334689999999999999999999999
Q ss_pred ccCHHHHHHHHH
Q 007190 392 KLTATELEFAKD 403 (613)
Q Consensus 392 ~It~~dl~~A~~ 403 (613)
.|+.+|+.+|+.
T Consensus 479 ~V~~~hv~eAl~ 490 (506)
T PRK09862 479 IITRQHLQEAVS 490 (506)
T ss_pred CCCHHHHHHHHH
Confidence 999999999975
No 195
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=2e-10 Score=117.75 Aligned_cols=123 Identities=33% Similarity=0.464 Sum_probs=87.0
Q ss_pred cCCCHHHHHHHHHHHHHhcCchhhhhcC-------CCC-CceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhh-h
Q 007190 171 VKGCDDAKQELVEVVEYLKNPSKFTRLG-------GKL-PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE-M 241 (613)
Q Consensus 171 V~G~~e~k~~L~eiv~~l~~p~~~~~lg-------~~~-p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~-~ 241 (613)
|+|++.+|+.|.=.|-. -|.++. ... -.++||.||+|+|||+||+.+|+.+++||...++..+.+ .
T Consensus 63 VIGQe~AKKvLsVAVYN-----HYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAG 137 (408)
T COG1219 63 VIGQEQAKKVLSVAVYN-----HYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAG 137 (408)
T ss_pred eecchhhhceeeeeehh-----HHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhcc
Confidence 89999999888643311 111111 111 147999999999999999999999999999999988866 5
Q ss_pred hhhhhHHH-HHHHHHHHH----cCCCeEEEEcCCCccccCCccCC----cccHHHHHHHHHHhhcc
Q 007190 242 FVGVGARR-VRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGF 298 (613)
Q Consensus 242 ~~g~~~~~-vr~lf~~A~----~~~P~ILfIDEiD~l~~~r~~~~----~~~~~~l~~LL~~ldg~ 298 (613)
|+|+.... +..++..|. +....||||||||.+.++..+.+ -..+-+...||..++|.
T Consensus 138 YVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 138 YVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred ccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 88875443 344444431 11235999999999988765432 12466778899999974
No 196
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.7e-09 Score=117.00 Aligned_cols=156 Identities=24% Similarity=0.340 Sum_probs=110.3
Q ss_pred HHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEe-ecchhhhhhhhhhHHHHHHHHHHHHcCC
Q 007190 183 EVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR-AGSEFEEMFVGVGARRVRSLFQAAKKKA 261 (613)
Q Consensus 183 eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~i-s~s~~~~~~~g~~~~~vr~lf~~A~~~~ 261 (613)
.++...++++++ +-..+||.||||+|||.||-.+|...+.||+.+ |..+.+..........++..|+.|.+..
T Consensus 525 llv~qvk~s~~s------~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~ 598 (744)
T KOG0741|consen 525 LLVQQVKNSERS------PLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSP 598 (744)
T ss_pred HHHHHhhccccC------cceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCc
Confidence 345556666552 235799999999999999999999999999975 4455544433344567899999999998
Q ss_pred CeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccC-CceEEEeecCCCCCCC-hhhcCCCccceEEEccCCCH-h
Q 007190 262 PCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQN-EGIILMAATNLPDILD-PALTRPGRFDRHIVVPNPDV-R 338 (613)
Q Consensus 262 P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~-~~ViVIaaTN~p~~Ld-~aLlRpgRFd~~I~v~~Pd~-~ 338 (613)
-+||++|+|+.|..--.-++.....++..|+..+....+. .+.+|++||.+.+.|. -.++. .|+-.+.+|..+. +
T Consensus 599 lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~ 676 (744)
T KOG0741|consen 599 LSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGE 676 (744)
T ss_pred ceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchH
Confidence 8999999999885432222334566777777777765544 3577888887665442 23444 7888999987654 5
Q ss_pred hHHHHHHH
Q 007190 339 GRQEILEL 346 (613)
Q Consensus 339 ~R~~IL~~ 346 (613)
+..+++..
T Consensus 677 ~~~~vl~~ 684 (744)
T KOG0741|consen 677 QLLEVLEE 684 (744)
T ss_pred HHHHHHHH
Confidence 55555543
No 197
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.08 E-value=3.2e-10 Score=109.20 Aligned_cols=131 Identities=27% Similarity=0.404 Sum_probs=82.8
Q ss_pred cCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhh-----h
Q 007190 171 VKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM-----F 242 (613)
Q Consensus 171 V~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~-----~ 242 (613)
++|.+++.+++.+.+..+.. .|..|||+|++||||+++|+++.+.. +.||+.++|+.+... .
T Consensus 1 liG~s~~m~~~~~~~~~~a~----------~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS----------SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT----------STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhC----------CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 57888888888877765332 33579999999999999999999865 579999999887433 1
Q ss_pred hhhh-------HHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhc--cc-------cCCceEE
Q 007190 243 VGVG-------ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDG--FE-------QNEGIIL 306 (613)
Q Consensus 243 ~g~~-------~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg--~~-------~~~~ViV 306 (613)
.|.. ......+|+.|... +||||||+.|. ......|+..++. +. ...++.+
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~G---tL~Ld~I~~L~----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~Ri 137 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANGG---TLFLDEIEDLP----------PELQAKLLRVLEEGKFTRLGSDKPVPVDVRI 137 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTTS---EEEEETGGGS-----------HHHHHHHHHHHHHSEEECCTSSSEEE--EEE
T ss_pred hccccccccccccccCCceeeccce---EEeecchhhhH----------HHHHHHHHHHHhhchhccccccccccccceE
Confidence 2211 01123677777665 99999999992 3455556655552 11 1236899
Q ss_pred EeecCCCCCCChhhcCCCccc
Q 007190 307 MAATNLPDILDPALTRPGRFD 327 (613)
Q Consensus 307 IaaTN~p~~Ld~aLlRpgRFd 327 (613)
|++|+.+ |...+. .|+|.
T Consensus 138 I~st~~~--l~~~v~-~g~fr 155 (168)
T PF00158_consen 138 IASTSKD--LEELVE-QGRFR 155 (168)
T ss_dssp EEEESS---HHHHHH-TTSS-
T ss_pred EeecCcC--HHHHHH-cCCCh
Confidence 9999953 333333 36663
No 198
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.08 E-value=7e-10 Score=106.14 Aligned_cols=133 Identities=23% Similarity=0.374 Sum_probs=90.8
Q ss_pred CCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCC-----------------------
Q 007190 173 GCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP----------------------- 229 (613)
Q Consensus 173 G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~p----------------------- 229 (613)
|++++++.|.+.+. ..+.|..+||+||+|+||+++|+++|+.+-..
T Consensus 1 gq~~~~~~L~~~~~-----------~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIK-----------SGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHH-----------CTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHH-----------cCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 77888888887775 46788899999999999999999999976321
Q ss_pred eeEeecchhhhhhhhhhHHHHHHHHHHHHc----CCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceE
Q 007190 230 FFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGII 305 (613)
Q Consensus 230 fi~is~s~~~~~~~g~~~~~vr~lf~~A~~----~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~Vi 305 (613)
++.++...... ......++++...+.. ....|++|||+|.+ .....|.||+.|+. +..+++
T Consensus 70 ~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l----------~~~a~NaLLK~LEe--pp~~~~ 134 (162)
T PF13177_consen 70 FIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL----------TEEAQNALLKTLEE--PPENTY 134 (162)
T ss_dssp EEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-----------HHHHHHHHHHHHS--TTTTEE
T ss_pred eEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh----------hHHHHHHHHHHhcC--CCCCEE
Confidence 22222111100 1123556666555432 34569999999999 56789999999994 556788
Q ss_pred EEeecCCCCCCChhhcCCCccceEEEccC
Q 007190 306 LMAATNLPDILDPALTRPGRFDRHIVVPN 334 (613)
Q Consensus 306 VIaaTN~p~~Ld~aLlRpgRFd~~I~v~~ 334 (613)
+|.+|+.++.|.|.+++ |+ ..+.+++
T Consensus 135 fiL~t~~~~~il~TI~S--Rc-~~i~~~~ 160 (162)
T PF13177_consen 135 FILITNNPSKILPTIRS--RC-QVIRFRP 160 (162)
T ss_dssp EEEEES-GGGS-HHHHT--TS-EEEEE--
T ss_pred EEEEECChHHChHHHHh--hc-eEEecCC
Confidence 88899999999999998 87 5666654
No 199
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.07 E-value=2.6e-09 Score=109.97 Aligned_cols=197 Identities=18% Similarity=0.187 Sum_probs=131.4
Q ss_pred ccccccCCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCe----
Q 007190 155 LNKEVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPF---- 230 (613)
Q Consensus 155 ~~~~~~~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pf---- 230 (613)
.+.+|.+.+++.+..||++.++....+.++.+ -.+.| +.|+|||||||||+...+.|..+-.|.
T Consensus 27 ~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~-----------~~~lP-h~L~YgPPGtGktsti~a~a~~ly~~~~~~~ 94 (360)
T KOG0990|consen 27 YPQPWVEKYRPPFLGIVIKQEPIWSTENRYSG-----------MPGLP-HLLFYGPPGTGKTSTILANARDFYSPHPTTS 94 (360)
T ss_pred cCCCCccCCCCchhhhHhcCCchhhHHHHhcc-----------CCCCC-cccccCCCCCCCCCchhhhhhhhcCCCCchh
Confidence 34578888899999999999998777766632 13445 899999999999999999999887651
Q ss_pred --eEeecchhhhhhhhhhHHHHHHHHHHHHc-------CCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccC
Q 007190 231 --FYRAGSEFEEMFVGVGARRVRSLFQAAKK-------KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQN 301 (613)
Q Consensus 231 --i~is~s~~~~~~~g~~~~~vr~lf~~A~~-------~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~ 301 (613)
..++.|+-.. .+. .+.--..|..++. ..+..+++||.|++ .....|+|-+.++.+..+
T Consensus 95 m~lelnaSd~rg--id~-vr~qi~~fast~~~~~fst~~~fKlvILDEADaM----------T~~AQnALRRviek~t~n 161 (360)
T KOG0990|consen 95 MLLELNASDDRG--IDP-VRQQIHLFASTQQPTTYSTHAAFKLVILDEADAM----------TRDAQNALRRVIEKYTAN 161 (360)
T ss_pred HHHHhhccCccC--Ccc-hHHHHHHHHhhccceeccccCceeEEEecchhHh----------hHHHHHHHHHHHHHhccc
Confidence 1222222111 011 1122234555542 36789999999999 456777777788876666
Q ss_pred CceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhc-HHHHHhcCCCCCHHHHHHHHHH
Q 007190 302 EGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVD-VKAIARGTPGFNGADLANLVNI 380 (613)
Q Consensus 302 ~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~d-l~~la~~t~G~sgadL~~lv~~ 380 (613)
..+. ..+|+|..+.|++++ ||. .+.+.+-+...-...+.+++.........+ ...+++ .|-.|.+..+|.
T Consensus 162 ~rF~--ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r----~s~gDmr~a~n~ 232 (360)
T KOG0990|consen 162 TRFA--TISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGR----LSVGDMRVALNY 232 (360)
T ss_pred eEEE--EeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHH----HhHHHHHHHHHH
Confidence 5444 567999999999987 774 445666677777778888887655443322 333444 344576666665
Q ss_pred HHHHH
Q 007190 381 AAIKA 385 (613)
Q Consensus 381 Aa~~A 385 (613)
....+
T Consensus 233 Lqs~~ 237 (360)
T KOG0990|consen 233 LQSIL 237 (360)
T ss_pred HHHHH
Confidence 54433
No 200
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.06 E-value=4.3e-09 Score=111.33 Aligned_cols=135 Identities=17% Similarity=0.275 Sum_probs=97.9
Q ss_pred CCCCCceEEEEccCCChHHHHHHHHHHhcCCCe--eEeec--------------chhh--hhhh--hhhHHHHHHHHHHH
Q 007190 198 GGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPF--FYRAG--------------SEFE--EMFV--GVGARRVRSLFQAA 257 (613)
Q Consensus 198 g~~~p~gvLL~GPpGTGKT~LAralA~e~~~pf--i~is~--------------s~~~--~~~~--g~~~~~vr~lf~~A 257 (613)
.++.|.++||+||+|+||+++|+++|+.+.+.- -.-.| .++. .... ..+...+|++-+.+
T Consensus 20 ~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~ 99 (325)
T PRK06871 20 QGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKV 99 (325)
T ss_pred cCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHH
Confidence 367888999999999999999999999764311 00001 1110 0000 12344566655554
Q ss_pred H----cCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEcc
Q 007190 258 K----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVP 333 (613)
Q Consensus 258 ~----~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~ 333 (613)
. .+.-.|++||++|.+ .....|.||+.++ ++..++++|.+|+.++.|.|.+++ |+ ..+.|+
T Consensus 100 ~~~~~~g~~KV~iI~~a~~m----------~~~AaNaLLKtLE--EPp~~~~fiL~t~~~~~llpTI~S--RC-~~~~~~ 164 (325)
T PRK06871 100 SQHAQQGGNKVVYIQGAERL----------TEAAANALLKTLE--EPRPNTYFLLQADLSAALLPTIYS--RC-QTWLIH 164 (325)
T ss_pred hhccccCCceEEEEechhhh----------CHHHHHHHHHHhc--CCCCCeEEEEEECChHhCchHHHh--hc-eEEeCC
Confidence 3 233469999999999 4678899999999 467778888899999999999998 88 688999
Q ss_pred CCCHhhHHHHHHHH
Q 007190 334 NPDVRGRQEILELY 347 (613)
Q Consensus 334 ~Pd~~~R~~IL~~~ 347 (613)
+|+.++..+.|...
T Consensus 165 ~~~~~~~~~~L~~~ 178 (325)
T PRK06871 165 PPEEQQALDWLQAQ 178 (325)
T ss_pred CCCHHHHHHHHHHH
Confidence 99998888777754
No 201
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.04 E-value=1.5e-09 Score=115.53 Aligned_cols=135 Identities=19% Similarity=0.264 Sum_probs=99.4
Q ss_pred CCCCCceEEEEccCCChHHHHHHHHHHhcCCCee---Eeecc--------------hhhhhh------------------
Q 007190 198 GGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFF---YRAGS--------------EFEEMF------------------ 242 (613)
Q Consensus 198 g~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi---~is~s--------------~~~~~~------------------ 242 (613)
..+.|.++||+||+|+||+++|+++|+.+.+.-- ...|. ++....
T Consensus 17 ~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~ 96 (342)
T PRK06964 17 RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEA 96 (342)
T ss_pred cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccc
Confidence 3578999999999999999999999997754210 00111 110000
Q ss_pred -------------hhhhHHHHHHHHHHHHc----CCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceE
Q 007190 243 -------------VGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGII 305 (613)
Q Consensus 243 -------------~g~~~~~vr~lf~~A~~----~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~Vi 305 (613)
...+...+|++...+.. ..-.|++||++|.+ .....|.||+.++ ++..+++
T Consensus 97 ~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m----------~~~AaNaLLKtLE--EPp~~t~ 164 (342)
T PRK06964 97 DADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL----------NVAAANALLKTLE--EPPPGTV 164 (342)
T ss_pred hhhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc----------CHHHHHHHHHHhc--CCCcCcE
Confidence 01123456666655432 23459999999999 4678899999999 5777889
Q ss_pred EEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHH
Q 007190 306 LMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELY 347 (613)
Q Consensus 306 VIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~ 347 (613)
+|.+|+.|+.|.|.+++ |+ ..+.|++|+.++..+.|...
T Consensus 165 fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 165 FLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred EEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 99999999999999998 88 78999999999888888654
No 202
>PRK08116 hypothetical protein; Validated
Probab=99.04 E-value=1.6e-09 Score=112.03 Aligned_cols=123 Identities=22% Similarity=0.313 Sum_probs=75.3
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhhhhhh----hHHHHHHHHHHHHcCCCeEEEEcCCCccc
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGV----GARRVRSLFQAAKKKAPCIIFIDEIDAVG 274 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~~~g~----~~~~vr~lf~~A~~~~P~ILfIDEiD~l~ 274 (613)
+.|++|+||||||||+||.++++++ +.++++++.+++...+... ......+++.... ...+|+|||++...
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCCC
Confidence 4589999999999999999999975 7899999988876654221 1112223443333 23599999996531
Q ss_pred cCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCC-CC----CChhhcCCCcc---ceEEEccCCCH
Q 007190 275 STRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP-DI----LDPALTRPGRF---DRHIVVPNPDV 337 (613)
Q Consensus 275 ~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p-~~----Ld~aLlRpgRF---d~~I~v~~Pd~ 337 (613)
. .......|...++....+ +..+|.|||.+ +. ++..+.+ |+ ...|.++.||.
T Consensus 192 ~--------t~~~~~~l~~iin~r~~~-~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 192 D--------TEWAREKVYNIIDSRYRK-GLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred C--------CHHHHHHHHHHHHHHHHC-CCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 1 122334455555543222 23456677765 33 4556655 53 23566666664
No 203
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1.7e-09 Score=111.69 Aligned_cols=80 Identities=26% Similarity=0.380 Sum_probs=60.6
Q ss_pred EEEEcCCCccccCCccCC--cccHHHHHHHHHHhhccc--------cCCceEEEeecC----CCCCCChhhcCCCccceE
Q 007190 264 IIFIDEIDAVGSTRKQWE--GHTKKTLHQLLVEMDGFE--------QNEGIILMAATN----LPDILDPALTRPGRFDRH 329 (613)
Q Consensus 264 ILfIDEiD~l~~~r~~~~--~~~~~~l~~LL~~ldg~~--------~~~~ViVIaaTN----~p~~Ld~aLlRpgRFd~~ 329 (613)
||||||||.++.+.+.+. -..+-+...||-.++|.. ..+.+++||+.- .|.+|-|.|. |||...
T Consensus 253 IvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GRfPIR 330 (444)
T COG1220 253 IVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GRFPIR 330 (444)
T ss_pred eEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CCCceE
Confidence 999999999987765332 223456667887777642 345689998864 5788888886 599999
Q ss_pred EEccCCCHhhHHHHHH
Q 007190 330 IVVPNPDVRGRQEILE 345 (613)
Q Consensus 330 I~v~~Pd~~~R~~IL~ 345 (613)
+++...+.++-..||.
T Consensus 331 VEL~~Lt~~Df~rILt 346 (444)
T COG1220 331 VELDALTKEDFERILT 346 (444)
T ss_pred EEcccCCHHHHHHHHc
Confidence 9999999988887764
No 204
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.03 E-value=6.3e-09 Score=109.84 Aligned_cols=154 Identities=18% Similarity=0.265 Sum_probs=104.1
Q ss_pred CCCCCceEEEEccCCChHHHHHHHHHHhcCCC---------------------eeEee--cchhhhh-hhhhhHHHHHHH
Q 007190 198 GGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP---------------------FFYRA--GSEFEEM-FVGVGARRVRSL 253 (613)
Q Consensus 198 g~~~p~gvLL~GPpGTGKT~LAralA~e~~~p---------------------fi~is--~s~~~~~-~~g~~~~~vr~l 253 (613)
.++.|..+||+||+|+||+++|.++|+.+.+. |..+. ..+-..+ ....+...+|++
T Consensus 22 ~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l 101 (319)
T PRK08769 22 AGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREI 101 (319)
T ss_pred cCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHH
Confidence 46788899999999999999999999866331 11110 0000000 001124456666
Q ss_pred HHHHHc----CCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCCCCChhhcCCCccceE
Q 007190 254 FQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRH 329 (613)
Q Consensus 254 f~~A~~----~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~ 329 (613)
.+.+.. ..-.|++||++|.+ .....|.||+.|+. +..++++|..|+.++.|.|.+++ |+ ..
T Consensus 102 ~~~~~~~p~~g~~kV~iI~~ae~m----------~~~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpTIrS--RC-q~ 166 (319)
T PRK08769 102 SQKLALTPQYGIAQVVIVDPADAI----------NRAACNALLKTLEE--PSPGRYLWLISAQPARLPATIRS--RC-QR 166 (319)
T ss_pred HHHHhhCcccCCcEEEEeccHhhh----------CHHHHHHHHHHhhC--CCCCCeEEEEECChhhCchHHHh--hh-eE
Confidence 655433 22369999999999 46788999999994 55667788888999999999998 88 68
Q ss_pred EEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCH
Q 007190 330 IVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNG 371 (613)
Q Consensus 330 I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sg 371 (613)
+.|+.|+.++-.+.|... ... ..+...++..+.|..+
T Consensus 167 i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G~p~ 203 (319)
T PRK08769 167 LEFKLPPAHEALAWLLAQ----GVS-ERAAQEALDAARGHPG 203 (319)
T ss_pred eeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCCCHH
Confidence 899999988777777542 222 2234455666665433
No 205
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.01 E-value=4.4e-09 Score=111.71 Aligned_cols=84 Identities=19% Similarity=0.224 Sum_probs=60.7
Q ss_pred CCc-ccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCC-------CeeEeec---
Q 007190 167 TFK-DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV-------PFFYRAG--- 235 (613)
Q Consensus 167 ~f~-dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~-------pfi~is~--- 235 (613)
-|+ ++.|++++++++.+ +++.... . .....+.++|+||||||||++|++|++.++. |++.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~---~l~~~a~--g-~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~ 121 (361)
T smart00763 48 FFDHDFFGMEEAIERFVN---YFKSAAQ--G-LEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGE 121 (361)
T ss_pred ccchhccCcHHHHHHHHH---HHHHHHh--c-CCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCC
Confidence 488 99999999666654 4443322 1 1223467999999999999999999999976 8999988
Q ss_pred -chhhhhhhhhhHHHHHHHHHH
Q 007190 236 -SEFEEMFVGVGARRVRSLFQA 256 (613)
Q Consensus 236 -s~~~~~~~g~~~~~vr~lf~~ 256 (613)
+.+.+..++.....+|+.|..
T Consensus 122 ~sp~~e~Pl~l~p~~~r~~~~~ 143 (361)
T smart00763 122 ESPMHEDPLHLFPDELREDLED 143 (361)
T ss_pred CCCCccCCcccCCHHHHHHHHH
Confidence 666666555555555555543
No 206
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=7e-10 Score=119.88 Aligned_cols=210 Identities=25% Similarity=0.331 Sum_probs=121.0
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcC-----------------
Q 007190 165 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG----------------- 227 (613)
Q Consensus 165 ~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~----------------- 227 (613)
..+|.||+|++.+|..|..... | .+++|++||||||||++|+-+..-+-
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA-----------G---gHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~ 240 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA-----------G---GHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLA 240 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh-----------c---CCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhc
Confidence 3489999999999999976553 2 35899999999999999999866321
Q ss_pred ------------CCeeEeecchhhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHh
Q 007190 228 ------------VPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEM 295 (613)
Q Consensus 228 ------------~pfi~is~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~l 295 (613)
.||..-..+.-....+|.+..---.-...|. ..||||||+-.+ ..++|+.|.+=|
T Consensus 241 g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH---~GVLFLDElpef----------~~~iLe~LR~PL 307 (490)
T COG0606 241 GDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLAH---NGVLFLDELPEF----------KRSILEALREPL 307 (490)
T ss_pred ccccccCccceeCCccCCCccchHHHHhCCCCCCCCCceeeec---CCEEEeeccchh----------hHHHHHHHhCcc
Confidence 0111100000000011111000000000111 249999998665 357777777666
Q ss_pred hcccc-----------CCceEEEeecCCCC-----------------------CCChhhcCCCccceEEEccCCCHhhH-
Q 007190 296 DGFEQ-----------NEGIILMAATNLPD-----------------------ILDPALTRPGRFDRHIVVPNPDVRGR- 340 (613)
Q Consensus 296 dg~~~-----------~~~ViVIaaTN~p~-----------------------~Ld~aLlRpgRFd~~I~v~~Pd~~~R- 340 (613)
+.-+- ..++.+|+++|..- .|...+++ |||..+.++.++..++
T Consensus 308 E~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~vev~~~~~~e~~ 385 (490)
T COG0606 308 ENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLD--RIDLMVEVPRLSAGELI 385 (490)
T ss_pred ccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHh--hhhheecccCCCHHHhh
Confidence 64211 23477888988541 22334555 8999999998764333
Q ss_pred -------------HHHHHHH----hccCCC--CC----------------hhcHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 007190 341 -------------QEILELY----LQDKPL--AD----------------DVDVKAIARGTPGFNGADLANLVNIAAIKA 385 (613)
Q Consensus 341 -------------~~IL~~~----l~~~~l--~~----------------d~dl~~la~~t~G~sgadL~~lv~~Aa~~A 385 (613)
..+.+.+ .+.... .. +.++-..+-..-++|.+....+++-|...|
T Consensus 386 ~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~~~rILKvarTiA 465 (490)
T COG0606 386 RQVPTGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQREDADLLKAALERLGLSARAYHRILKVARTIA 465 (490)
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcchhHHHHHHHHHHHhhhh
Confidence 1122111 111111 11 111222233334577788888888888888
Q ss_pred HHhCCCccCHHHHHHHHH
Q 007190 386 AVDGGEKLTATELEFAKD 403 (613)
Q Consensus 386 ~~~~~~~It~~dl~~A~~ 403 (613)
-.++.+.|...|+.+|+.
T Consensus 466 DL~g~~~i~~~hl~eAi~ 483 (490)
T COG0606 466 DLEGSEQIERSHLAEAIS 483 (490)
T ss_pred cccCcchhhHHHHHHHHh
Confidence 888888888888888764
No 207
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.00 E-value=2.2e-09 Score=118.54 Aligned_cols=203 Identities=22% Similarity=0.252 Sum_probs=120.8
Q ss_pred CCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhhhh
Q 007190 167 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV 243 (613)
Q Consensus 167 ~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~~~ 243 (613)
.+.+++|.....+.+.+.+..+.. ...+++++|++||||+++|+++.... +.||+.++|..+.+...
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAP----------SDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhC----------CCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 566789988887777776653322 22369999999999999999998765 47999999988744321
Q ss_pred hhh------------HHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccc---------cCC
Q 007190 244 GVG------------ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QNE 302 (613)
Q Consensus 244 g~~------------~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~---------~~~ 302 (613)
... .......|..| ...+|||||++.+. ......|+..++.-. ...
T Consensus 207 ~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l~----------~~~q~~l~~~l~~~~~~~~~~~~~~~~ 273 (445)
T TIGR02915 207 ESELFGYEKGAFTGAVKQTLGKIEYA---HGGTLFLDEIGDLP----------LNLQAKLLRFLQERVIERLGGREEIPV 273 (445)
T ss_pred HHHhcCCCCCCcCCCccCCCCceeEC---CCCEEEEechhhCC----------HHHHHHHHHHHhhCeEEeCCCCceeee
Confidence 110 00011122222 24599999999993 334455555554211 123
Q ss_pred ceEEEeecCCCC-------CCChhhcCCCccceEEEccCCCHhhHHH----HHHHHhccC----CC----CChhcHHHHH
Q 007190 303 GIILMAATNLPD-------ILDPALTRPGRFDRHIVVPNPDVRGRQE----ILELYLQDK----PL----ADDVDVKAIA 363 (613)
Q Consensus 303 ~ViVIaaTN~p~-------~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~----IL~~~l~~~----~l----~~d~dl~~la 363 (613)
++.+|++|+.+- .+.+.|.. |+ ..+.+..|...+|.+ ++++++... .. -++..+..|.
T Consensus 274 ~~rii~~~~~~l~~~~~~~~~~~~L~~--~l-~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~ 350 (445)
T TIGR02915 274 DVRIVCATNQDLKRMIAEGTFREDLFY--RI-AEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALE 350 (445)
T ss_pred ceEEEEecCCCHHHHHHcCCccHHHHH--Hh-ccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 578888888641 23333332 33 245667777777765 444444321 11 1233355555
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHH
Q 007190 364 RGTPGFNGADLANLVNIAAIKAAVDGGEKLTATEL 398 (613)
Q Consensus 364 ~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl 398 (613)
...---+.++|++++++|+..+ ....|+.+++
T Consensus 351 ~~~wpgNvreL~~~i~~a~~~~---~~~~i~~~~l 382 (445)
T TIGR02915 351 AHAWPGNVRELENKVKRAVIMA---EGNQITAEDL 382 (445)
T ss_pred hCCCCChHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 5442235688888888777543 3456777665
No 208
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.00 E-value=7.5e-09 Score=110.20 Aligned_cols=152 Identities=16% Similarity=0.196 Sum_probs=104.7
Q ss_pred CCCCCceEEEEccCCChHHHHHHHHHHhcCCC-------eeE---------eecchhhhhh-----hhhhHHHHHHHHHH
Q 007190 198 GGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP-------FFY---------RAGSEFEEMF-----VGVGARRVRSLFQA 256 (613)
Q Consensus 198 g~~~p~gvLL~GPpGTGKT~LAralA~e~~~p-------fi~---------is~s~~~~~~-----~g~~~~~vr~lf~~ 256 (613)
.++.|.++||+||+|+||+++|+++|..+-+. +=. -+..|+.... ...+...+|++-+.
T Consensus 20 ~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~ 99 (334)
T PRK07993 20 AGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEK 99 (334)
T ss_pred cCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHH
Confidence 46789999999999999999999999976331 100 0001110000 01223455665554
Q ss_pred HH----cCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEc
Q 007190 257 AK----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVV 332 (613)
Q Consensus 257 A~----~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v 332 (613)
+. ...-.|++||++|.+ ..+..|.||+.|+ ++..+.++|..|+.++.|.|.+++ |+. .+.|
T Consensus 100 ~~~~~~~g~~kV~iI~~ae~m----------~~~AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTIrS--RCq-~~~~ 164 (334)
T PRK07993 100 LYEHARLGGAKVVWLPDAALL----------TDAAANALLKTLE--EPPENTWFFLACREPARLLATLRS--RCR-LHYL 164 (334)
T ss_pred HhhccccCCceEEEEcchHhh----------CHHHHHHHHHHhc--CCCCCeEEEEEECChhhChHHHHh--ccc-cccC
Confidence 43 334569999999999 4678999999999 467788899999999999999998 885 6799
Q ss_pred cCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCC
Q 007190 333 PNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPG 368 (613)
Q Consensus 333 ~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G 368 (613)
++|+.++..+.|.... +.+ ..+...+++.+.|
T Consensus 165 ~~~~~~~~~~~L~~~~---~~~-~~~a~~~~~la~G 196 (334)
T PRK07993 165 APPPEQYALTWLSREV---TMS-QDALLAALRLSAG 196 (334)
T ss_pred CCCCHHHHHHHHHHcc---CCC-HHHHHHHHHHcCC
Confidence 9999888777775421 222 2334455666665
No 209
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.97 E-value=1.2e-08 Score=114.09 Aligned_cols=194 Identities=19% Similarity=0.248 Sum_probs=131.0
Q ss_pred eEEEEccCCChHHHHHHHHHHhc----------CCCeeEeecchhhhh---hh-------hh------hHHHHHHHHHHH
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEA----------GVPFFYRAGSEFEEM---FV-------GV------GARRVRSLFQAA 257 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~----------~~pfi~is~s~~~~~---~~-------g~------~~~~vr~lf~~A 257 (613)
.+++.|-||||||.+++.+-+++ ..+++++++-.+.+. |. |. +...+..-|...
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 78999999999999999998755 245778887665332 21 11 112233333321
Q ss_pred -HcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCCCCChhhcC---CCccce-EEEc
Q 007190 258 -KKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTR---PGRFDR-HIVV 332 (613)
Q Consensus 258 -~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlR---pgRFd~-~I~v 332 (613)
-...||||+|||+|.|..+ .+.+++.++..-. .++..++||+..|..+. +..++- .+|++. .+.|
T Consensus 504 k~~~~~~VvLiDElD~Lvtr-------~QdVlYn~fdWpt--~~~sKLvvi~IaNTmdl-PEr~l~nrvsSRlg~tRi~F 573 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTR-------SQDVLYNIFDWPT--LKNSKLVVIAIANTMDL-PERLLMNRVSSRLGLTRICF 573 (767)
T ss_pred CCCCCCEEEEeccHHHHhcc-------cHHHHHHHhcCCc--CCCCceEEEEecccccC-HHHHhccchhhhccceeeec
Confidence 2345899999999999764 3567777765433 45677888888886543 333321 125543 8899
Q ss_pred cCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCH--HHHHHHHHHHHHHHHHhCC-------CccCHHHHHHHHH
Q 007190 333 PNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNG--ADLANLVNIAAIKAAVDGG-------EKLTATELEFAKD 403 (613)
Q Consensus 333 ~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sg--adL~~lv~~Aa~~A~~~~~-------~~It~~dl~~A~~ 403 (613)
.+++.++..+|+...++......+...+.+|+.....|| +....+|++|...|..+.. ..|++.|+..|++
T Consensus 574 ~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~ 653 (767)
T KOG1514|consen 574 QPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAIN 653 (767)
T ss_pred CCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccccccccceeehHHHHHHHH
Confidence 999999999999999987644444445555555544554 4556789999888877665 5688888888888
Q ss_pred HHhc
Q 007190 404 RILM 407 (613)
Q Consensus 404 ~v~~ 407 (613)
.++.
T Consensus 654 em~~ 657 (767)
T KOG1514|consen 654 EMLA 657 (767)
T ss_pred HHhh
Confidence 7654
No 210
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.97 E-value=1.2e-09 Score=105.44 Aligned_cols=108 Identities=28% Similarity=0.346 Sum_probs=72.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCC----CeeEeecchhhhhhhhhhHHHHHHHHHH------HHcCCCeEEEEcCCCc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAGV----PFFYRAGSEFEEMFVGVGARRVRSLFQA------AKKKAPCIIFIDEIDA 272 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~~----pfi~is~s~~~~~~~g~~~~~vr~lf~~------A~~~~P~ILfIDEiD~ 272 (613)
..+||+||+|||||.+|+++|..+.. |++.++++++... +.....+..++.. +... .||||||||.
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~--gVVllDEidK 79 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEG--GVVLLDEIDK 79 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHH--TEEEEETGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccch--hhhhhHHHhh
Confidence 46899999999999999999999996 9999999998761 1111222222221 1112 2999999999
Q ss_pred cccCCccCC-cccHHHHHHHHHHhhccc---------cCCceEEEeecCCCC
Q 007190 273 VGSTRKQWE-GHTKKTLHQLLVEMDGFE---------QNEGIILMAATNLPD 314 (613)
Q Consensus 273 l~~~r~~~~-~~~~~~l~~LL~~ldg~~---------~~~~ViVIaaTN~p~ 314 (613)
+..+.+... -....+++.||+.+|+-. .-.++++|+|+|.-.
T Consensus 80 a~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 80 AHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp CSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred ccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 966421111 122467788888887521 124689999999653
No 211
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.95 E-value=1.5e-08 Score=117.91 Aligned_cols=127 Identities=22% Similarity=0.186 Sum_probs=76.6
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcC-------CCeeEeecchhhhhhhhh--hHHHH-HHHHHHHHcCCCeEEEEcCCC
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEAG-------VPFFYRAGSEFEEMFVGV--GARRV-RSLFQAAKKKAPCIIFIDEID 271 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~~-------~pfi~is~s~~~~~~~g~--~~~~v-r~lf~~A~~~~P~ILfIDEiD 271 (613)
..+|||+|+||||||.+|+++++-.. .++..+.+..... +.+. +...+ ...+..|. ..++||||+|
T Consensus 492 dihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~-~~d~~tG~~~le~GaLvlAd---gGtL~IDEid 567 (915)
T PTZ00111 492 IINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIK-FNESDNGRAMIQPGAVVLAN---GGVCCIDELD 567 (915)
T ss_pred CceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhh-hcccccCcccccCCcEEEcC---CCeEEecchh
Confidence 34799999999999999999998543 3444443333211 0000 00000 01111122 2499999999
Q ss_pred ccccCCccCCcccHHHHHHHHHHhhccc-----------cCCceEEEeecCCCC-------------CCChhhcCCCccc
Q 007190 272 AVGSTRKQWEGHTKKTLHQLLVEMDGFE-----------QNEGIILMAATNLPD-------------ILDPALTRPGRFD 327 (613)
Q Consensus 272 ~l~~~r~~~~~~~~~~l~~LL~~ldg~~-----------~~~~ViVIaaTN~p~-------------~Ld~aLlRpgRFd 327 (613)
.+. ......|+..|+.-. -+.++.||||+|... .|+++|++ |||
T Consensus 568 kms----------~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFD 635 (915)
T PTZ00111 568 KCH----------NESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFD 635 (915)
T ss_pred hCC----------HHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhc
Confidence 982 334445555564321 135689999999742 46789998 999
Q ss_pred eEE-EccCCCHhhHHHHH
Q 007190 328 RHI-VVPNPDVRGRQEIL 344 (613)
Q Consensus 328 ~~I-~v~~Pd~~~R~~IL 344 (613)
..+ .++.|+.+.=..|-
T Consensus 636 LIf~l~D~~d~~~D~~lA 653 (915)
T PTZ00111 636 LIYLVLDHIDQDTDQLIS 653 (915)
T ss_pred EEEEecCCCChHHHHHHH
Confidence 865 45677765544443
No 212
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.91 E-value=1.8e-08 Score=106.29 Aligned_cols=131 Identities=18% Similarity=0.284 Sum_probs=96.0
Q ss_pred CCCCCceEEEEccCCChHHHHHHHHHHhcCCC-----------------------eeEeecchhhhhhhhhhHHHHHHHH
Q 007190 198 GGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP-----------------------FFYRAGSEFEEMFVGVGARRVRSLF 254 (613)
Q Consensus 198 g~~~p~gvLL~GPpGTGKT~LAralA~e~~~p-----------------------fi~is~s~~~~~~~g~~~~~vr~lf 254 (613)
.++.|.++||+||.|+||+.+|+++|..+.+. |+.+.... ... ..+...+|++-
T Consensus 21 ~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~--~I~vdqiR~l~ 97 (319)
T PRK06090 21 AGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGK--SITVEQIRQCN 97 (319)
T ss_pred cCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCC--cCCHHHHHHHH
Confidence 46788999999999999999999999966321 22221110 000 01234556554
Q ss_pred HHHHc----CCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCCCCChhhcCCCccceEE
Q 007190 255 QAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHI 330 (613)
Q Consensus 255 ~~A~~----~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I 330 (613)
+.+.. +.-.|++||++|.+ .....|.||+.++ ++..++++|..|+.++.|.|.+++ |+ ..+
T Consensus 98 ~~~~~~~~~~~~kV~iI~~ae~m----------~~~AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTI~S--RC-q~~ 162 (319)
T PRK06090 98 RLAQESSQLNGYRLFVIEPADAM----------NESASNALLKTLE--EPAPNCLFLLVTHNQKRLLPTIVS--RC-QQW 162 (319)
T ss_pred HHHhhCcccCCceEEEecchhhh----------CHHHHHHHHHHhc--CCCCCeEEEEEECChhhChHHHHh--cc-eeE
Confidence 44432 33469999999999 4678899999999 466778888899999999999998 88 688
Q ss_pred EccCCCHhhHHHHHHH
Q 007190 331 VVPNPDVRGRQEILEL 346 (613)
Q Consensus 331 ~v~~Pd~~~R~~IL~~ 346 (613)
.|++|+.++..+.+..
T Consensus 163 ~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 163 VVTPPSTAQAMQWLKG 178 (319)
T ss_pred eCCCCCHHHHHHHHHH
Confidence 9999998888777754
No 213
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.91 E-value=1.5e-08 Score=112.59 Aligned_cols=205 Identities=22% Similarity=0.273 Sum_probs=123.4
Q ss_pred CCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhhhh
Q 007190 167 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV 243 (613)
Q Consensus 167 ~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~~~ 243 (613)
.|.+++|.....+.+.+.+..+.. ....++++|++|||||++|++++... +.||+.++|+.+.....
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~ 205 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSR----------SSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhc----------cCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHH
Confidence 467899999888877776654332 22369999999999999999999875 57999999988743211
Q ss_pred -----hhhH-------HHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccc---------cCC
Q 007190 244 -----GVGA-------RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QNE 302 (613)
Q Consensus 244 -----g~~~-------~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~---------~~~ 302 (613)
|... ......|..+ ....|||||+|.+. ......|+..++.-. ...
T Consensus 206 ~~~lfg~~~g~~~~~~~~~~g~~~~a---~~Gtl~l~~i~~l~----------~~~q~~L~~~l~~~~~~~~~~~~~~~~ 272 (469)
T PRK10923 206 ESELFGHEKGAFTGANTIRQGRFEQA---DGGTLFLDEIGDMP----------LDVQTRLLRVLADGQFYRVGGYAPVKV 272 (469)
T ss_pred HHHhcCCCCCCCCCCCcCCCCCeeEC---CCCEEEEeccccCC----------HHHHHHHHHHHhcCcEEeCCCCCeEEe
Confidence 1000 0001112222 23489999999993 334445555554311 123
Q ss_pred ceEEEeecCCCC-------CCChhhcCCCccceEEEccCCCHhhHHH----HHHHHhccC----CC----CChhcHHHHH
Q 007190 303 GIILMAATNLPD-------ILDPALTRPGRFDRHIVVPNPDVRGRQE----ILELYLQDK----PL----ADDVDVKAIA 363 (613)
Q Consensus 303 ~ViVIaaTN~p~-------~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~----IL~~~l~~~----~l----~~d~dl~~la 363 (613)
++.+|+||+..- .+.+.|.. ||. .+.+..|...+|.+ ++.+++++. .. .++..+..|.
T Consensus 273 ~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~ 349 (469)
T PRK10923 273 DVRIIAATHQNLEQRVQEGKFREDLFH--RLN-VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALT 349 (469)
T ss_pred eEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHH
Confidence 578888887641 23344444 442 45566666666654 555555321 11 1223355555
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 007190 364 RGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEF 400 (613)
Q Consensus 364 ~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~ 400 (613)
...---+.++|+++++++...+ ....|+.+|+..
T Consensus 350 ~~~wpgNv~eL~~~i~~~~~~~---~~~~i~~~~l~~ 383 (469)
T PRK10923 350 RLAWPGNVRQLENTCRWLTVMA---AGQEVLIQDLPG 383 (469)
T ss_pred hCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCcH
Confidence 5443335688888888776543 456788888753
No 214
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.91 E-value=1.6e-08 Score=108.03 Aligned_cols=159 Identities=26% Similarity=0.387 Sum_probs=102.2
Q ss_pred CCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc-------CCCeeEe-----
Q 007190 166 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-------GVPFFYR----- 233 (613)
Q Consensus 166 ~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~-------~~pfi~i----- 233 (613)
..|.-++|++..|..|--- --+|.. .|+|+.|+.|||||+++|+||.-+ |+||-.=
T Consensus 14 ~pf~aivGqd~lk~aL~l~---av~P~i---------ggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~ 81 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLN---AVDPQI---------GGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPE 81 (423)
T ss_pred cchhhhcCchHHHHHHhhh---hccccc---------ceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChh
Confidence 4688999999988776432 223322 489999999999999999999855 3333100
Q ss_pred -ecchhhhh-------------------hhhhhHHHH------HHHHH----------HHHcCCCeEEEEcCCCccccCC
Q 007190 234 -AGSEFEEM-------------------FVGVGARRV------RSLFQ----------AAKKKAPCIIFIDEIDAVGSTR 277 (613)
Q Consensus 234 -s~s~~~~~-------------------~~g~~~~~v------r~lf~----------~A~~~~P~ILfIDEiD~l~~~r 277 (613)
.|..+..+ -.|.++.++ ....+ .|+.+ -.|++|||+..|
T Consensus 82 ~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~An-RGIlYvDEvnlL---- 156 (423)
T COG1239 82 EMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARAN-RGILYVDEVNLL---- 156 (423)
T ss_pred hhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhcc-CCEEEEeccccc----
Confidence 01111111 112222211 11111 01222 249999999988
Q ss_pred ccCCcccHHHHHHHHHHhhc---------c--ccCCceEEEeecCCCC-CCChhhcCCCccceEEEccCC-CHhhHHHHH
Q 007190 278 KQWEGHTKKTLHQLLVEMDG---------F--EQNEGIILMAATNLPD-ILDPALTRPGRFDRHIVVPNP-DVRGRQEIL 344 (613)
Q Consensus 278 ~~~~~~~~~~l~~LL~~ldg---------~--~~~~~ViVIaaTN~p~-~Ld~aLlRpgRFd~~I~v~~P-d~~~R~~IL 344 (613)
..+.++.||..+.. + ....++++|+|+|.-+ .|-|.|+. ||...+.+..| +.++|.+|.
T Consensus 157 ------~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~Ii 228 (423)
T COG1239 157 ------DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVEII 228 (423)
T ss_pred ------cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHHHH
Confidence 45677777776543 1 2245699999999753 67788888 99999998765 688899988
Q ss_pred HHHhc
Q 007190 345 ELYLQ 349 (613)
Q Consensus 345 ~~~l~ 349 (613)
+..+.
T Consensus 229 ~r~~~ 233 (423)
T COG1239 229 RRRLA 233 (423)
T ss_pred HHHHH
Confidence 87664
No 215
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.90 E-value=1.9e-08 Score=111.31 Aligned_cols=205 Identities=22% Similarity=0.293 Sum_probs=122.1
Q ss_pred CCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhhhh
Q 007190 167 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV 243 (613)
Q Consensus 167 ~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~~~ 243 (613)
.+.+++|.......+.+.+..+... ...+|++|++||||+++|+++.... +.||+.++|..+.....
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a~~----------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~ 210 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIALS----------QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL 210 (457)
T ss_pred cccceecccHHHhHHHHHHHHHcCC----------CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH
Confidence 4667888888777766655443322 2369999999999999999998764 57999999987744321
Q ss_pred -----hhhH-------HHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhcc--c-------cCC
Q 007190 244 -----GVGA-------RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF--E-------QNE 302 (613)
Q Consensus 244 -----g~~~-------~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~--~-------~~~ 302 (613)
|... ......|..| ...+|||||+|.+. ......|+..++.- . ...
T Consensus 211 ~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ld~i~~l~----------~~~q~~L~~~l~~~~~~~~~~~~~~~~ 277 (457)
T PRK11361 211 ESELFGHEKGAFTGAQTLRQGLFERA---NEGTLLLDEIGEMP----------LVLQAKLLRILQEREFERIGGHQTIKV 277 (457)
T ss_pred HHHhcCCCCCCCCCCCCCCCCceEEC---CCCEEEEechhhCC----------HHHHHHHHHHHhcCcEEeCCCCceeee
Confidence 1000 0001122222 23599999999993 33455566555431 1 123
Q ss_pred ceEEEeecCCCCCCChhhcCCCccce-------EEEccCCCHhhHHH----HHHHHhccC----CC----CChhcHHHHH
Q 007190 303 GIILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGRQE----ILELYLQDK----PL----ADDVDVKAIA 363 (613)
Q Consensus 303 ~ViVIaaTN~p~~Ld~aLlRpgRFd~-------~I~v~~Pd~~~R~~----IL~~~l~~~----~l----~~d~dl~~la 363 (613)
++.+|++||.+- . .+.+.|+|.. .+.+..|...+|.+ +..+++.+. .. .++..+..+.
T Consensus 278 ~~rii~~t~~~l--~-~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~ 354 (457)
T PRK11361 278 DIRIIAATNRDL--Q-AMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLT 354 (457)
T ss_pred ceEEEEeCCCCH--H-HHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHH
Confidence 478899998642 1 2333344433 56677788877754 334444321 11 1223345555
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 007190 364 RGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEF 400 (613)
Q Consensus 364 ~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~ 400 (613)
...---+.++|++++++|... .....|+.+|+..
T Consensus 355 ~~~wpgNv~eL~~~~~~~~~~---~~~~~i~~~~l~~ 388 (457)
T PRK11361 355 AWSWPGNIRELSNVIERAVVM---NSGPIIFSEDLPP 388 (457)
T ss_pred cCCCCCcHHHHHHHHHHHHHh---CCCCcccHHHChH
Confidence 544333668888888877654 3455788877753
No 216
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.89 E-value=7.5e-08 Score=98.23 Aligned_cols=91 Identities=13% Similarity=0.116 Sum_probs=68.6
Q ss_pred CCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChh-cHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCC
Q 007190 313 PDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDV-DVKAIARGTPGFNGADLANLVNIAAIKAAVDGGE 391 (613)
Q Consensus 313 p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~-dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~ 391 (613)
|..+|-.++. |. ..|...+++.++..+||+..+......-+. .++.|......-|-+--.+|+..|.+.+.++...
T Consensus 339 phGiP~D~lD--R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~ 415 (454)
T KOG2680|consen 339 PHGIPIDLLD--RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGK 415 (454)
T ss_pred CCCCcHHHhh--hh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCc
Confidence 4567777766 55 477778889999999999999876554332 3455555444456666778999999999999999
Q ss_pred ccCHHHHHHHHHHHh
Q 007190 392 KLTATELEFAKDRIL 406 (613)
Q Consensus 392 ~It~~dl~~A~~~v~ 406 (613)
.+..+|++.+..-.+
T Consensus 416 ~v~~~di~r~y~LFl 430 (454)
T KOG2680|consen 416 VVEVDDIERVYRLFL 430 (454)
T ss_pred eeehhHHHHHHHHHh
Confidence 999999999987544
No 217
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.88 E-value=2.8e-09 Score=99.00 Aligned_cols=106 Identities=27% Similarity=0.438 Sum_probs=70.2
Q ss_pred CCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcC---CCeeEeecchhhhhhhhhhHH
Q 007190 172 KGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG---VPFFYRAGSEFEEMFVGVGAR 248 (613)
Q Consensus 172 ~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~---~pfi~is~s~~~~~~~g~~~~ 248 (613)
+|...+.+++++-+..+... ...|||+|+|||||+++|++++...+ .||+.++|..+.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~----------~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKS----------SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCS----------SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---------
T ss_pred CCCCHHHHHHHHHHHHHhCC----------CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---------
Confidence 46777777887777655432 23699999999999999999998765 477777776643
Q ss_pred HHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCC
Q 007190 249 RVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNL 312 (613)
Q Consensus 249 ~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~ 312 (613)
.++++.+ .+..|||+|+|.+ .......|+..++... +.++.+|+++..
T Consensus 62 --~~~l~~a---~~gtL~l~~i~~L----------~~~~Q~~L~~~l~~~~-~~~~RlI~ss~~ 109 (138)
T PF14532_consen 62 --AELLEQA---KGGTLYLKNIDRL----------SPEAQRRLLDLLKRQE-RSNVRLIASSSQ 109 (138)
T ss_dssp --HHHHHHC---TTSEEEEECGCCS-----------HHHHHHHHHHHHHCT-TTTSEEEEEECC
T ss_pred --HHHHHHc---CCCEEEECChHHC----------CHHHHHHHHHHHHhcC-CCCeEEEEEeCC
Confidence 3445554 4459999999999 2344555555555432 345566666654
No 218
>PRK12377 putative replication protein; Provisional
Probab=98.88 E-value=1.9e-08 Score=102.77 Aligned_cols=100 Identities=21% Similarity=0.227 Sum_probs=62.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhhhhhhhH--HHHHHHHHHHHcCCCeEEEEcCCCccccCC
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGVGA--RRVRSLFQAAKKKAPCIIFIDEIDAVGSTR 277 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~~~g~~~--~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r 277 (613)
.+++|+||||||||+||.|+|+++ +.++++++..++......... ....+++... ....+|+|||++.....
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~s- 178 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQRET- 178 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCCCC-
Confidence 589999999999999999999977 677888888887664322110 1122333333 34569999999776321
Q ss_pred ccCCcccHHHHHHHHHHhhccccCCceEEEeecCCC
Q 007190 278 KQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP 313 (613)
Q Consensus 278 ~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p 313 (613)
......+.+++..-. +...-+|.|||..
T Consensus 179 ----~~~~~~l~~ii~~R~----~~~~ptiitSNl~ 206 (248)
T PRK12377 179 ----KNEQVVLNQIIDRRT----ASMRSVGMLTNLN 206 (248)
T ss_pred ----HHHHHHHHHHHHHHH----hcCCCEEEEcCCC
Confidence 123344444443321 1222345578864
No 219
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.87 E-value=1.2e-08 Score=116.59 Aligned_cols=100 Identities=28% Similarity=0.369 Sum_probs=63.9
Q ss_pred ceEEEeecCCC--CCCChhhcCCCccc---eEEEccC--C-CHhhHHHHHHHHhccCC---CCChhc---HHHHHh---c
Q 007190 303 GIILMAATNLP--DILDPALTRPGRFD---RHIVVPN--P-DVRGRQEILELYLQDKP---LADDVD---VKAIAR---G 365 (613)
Q Consensus 303 ~ViVIaaTN~p--~~Ld~aLlRpgRFd---~~I~v~~--P-d~~~R~~IL~~~l~~~~---l~~d~d---l~~la~---~ 365 (613)
++.+|+++|+. ..+||+|.. ||. ..+.++. + +.+.+..+++.+.+... ....++ +..+.+ +
T Consensus 277 dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R 354 (637)
T PRK13765 277 DFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKR 354 (637)
T ss_pred eeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHH
Confidence 57889998875 567899987 885 4555542 2 24455556554443221 111222 222221 1
Q ss_pred CCC------CCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 007190 366 TPG------FNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDR 404 (613)
Q Consensus 366 t~G------~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A~~~ 404 (613)
..| ..-++|.++++.|...|..++.+.++.+|+.+|..+
T Consensus 355 ~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 355 RAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred HhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHHh
Confidence 112 346899999999999999999999999999988754
No 220
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.86 E-value=7e-08 Score=97.67 Aligned_cols=178 Identities=20% Similarity=0.251 Sum_probs=126.6
Q ss_pred ccCCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcC---CC------
Q 007190 159 VMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG---VP------ 229 (613)
Q Consensus 159 ~~~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~---~p------ 229 (613)
|+....+.+|+.+.+.++....|..+.. -.+.| ++|+|||+|+||.+.+.++-+++- ++
T Consensus 3 Wvdkyrpksl~~l~~~~e~~~~Lksl~~-----------~~d~P-Hll~yGPSGaGKKTrimclL~elYG~gveklki~~ 70 (351)
T KOG2035|consen 3 WVDKYRPKSLDELIYHEELANLLKSLSS-----------TGDFP-HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIET 70 (351)
T ss_pred chhhcCcchhhhcccHHHHHHHHHHhcc-----------cCCCC-eEEEECCCCCCchhhHHHHHHHHhCCCchheeeee
Confidence 3445567789999999999888876653 13345 799999999999999999988762 21
Q ss_pred --e------------------eEeecchhhhhhhhhh-HHHHHHHHHHHHcCC---------CeEEEEcCCCccccCCcc
Q 007190 230 --F------------------FYRAGSEFEEMFVGVG-ARRVRSLFQAAKKKA---------PCIIFIDEIDAVGSTRKQ 279 (613)
Q Consensus 230 --f------------------i~is~s~~~~~~~g~~-~~~vr~lf~~A~~~~---------P~ILfIDEiD~l~~~r~~ 279 (613)
| ++++.|+. |.- .--++++.+...+.. -.+++|.|.|.|
T Consensus 71 ~t~~tpS~kklEistvsS~yHlEitPSDa-----G~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~L------ 139 (351)
T KOG2035|consen 71 RTFTTPSKKKLEISTVSSNYHLEITPSDA-----GNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADEL------ 139 (351)
T ss_pred EEEecCCCceEEEEEecccceEEeChhhc-----CcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhh------
Confidence 1 12222221 111 123455555544332 259999999999
Q ss_pred CCcccHHHHHHHHHHhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChh-c
Q 007190 280 WEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDV-D 358 (613)
Q Consensus 280 ~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~-d 358 (613)
...+...|-..|+.+..+. .+|..+|....+-+++++ |+ ..|.+|.|+.++...++...+++.++.-.. -
T Consensus 140 ----T~dAQ~aLRRTMEkYs~~~--RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~ 210 (351)
T KOG2035|consen 140 ----TRDAQHALRRTMEKYSSNC--RLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKEL 210 (351)
T ss_pred ----hHHHHHHHHHHHHHHhcCc--eEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHH
Confidence 4556778888899776654 555567888888889988 77 688999999999999999999887766433 3
Q ss_pred HHHHHhcCCC
Q 007190 359 VKAIARGTPG 368 (613)
Q Consensus 359 l~~la~~t~G 368 (613)
+..+++.+.|
T Consensus 211 l~rIa~kS~~ 220 (351)
T KOG2035|consen 211 LKRIAEKSNR 220 (351)
T ss_pred HHHHHHHhcc
Confidence 6778876654
No 221
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=9.9e-09 Score=109.07 Aligned_cols=96 Identities=29% Similarity=0.462 Sum_probs=72.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhh-hhhhhhh-HHHHHHHHHHHH----cCCCeEEEEcCCCccccC
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE-EMFVGVG-ARRVRSLFQAAK----KKAPCIIFIDEIDAVGST 276 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~-~~~~g~~-~~~vr~lf~~A~----~~~P~ILfIDEiD~l~~~ 276 (613)
.+|||.||+|+|||+||+.||+-+++||..++|..+. ..|+|+. +..+..++..|. +....|+||||+|.+..+
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 3699999999999999999999999999999999884 4688874 445566666542 223459999999999855
Q ss_pred CccCC----cccHHHHHHHHHHhhcc
Q 007190 277 RKQWE----GHTKKTLHQLLVEMDGF 298 (613)
Q Consensus 277 r~~~~----~~~~~~l~~LL~~ldg~ 298 (613)
..... -..+-+...||..++|.
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEGt 332 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEGT 332 (564)
T ss_pred CccccccccccchhHHHHHHHHhccc
Confidence 43321 12356677888888873
No 222
>PRK15115 response regulator GlrR; Provisional
Probab=98.82 E-value=3.1e-08 Score=109.36 Aligned_cols=199 Identities=20% Similarity=0.277 Sum_probs=118.7
Q ss_pred ccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhhhhhhh
Q 007190 170 DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGVG 246 (613)
Q Consensus 170 dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~~~g~~ 246 (613)
.++|.......+.+....+.. ....++|+|++|||||++|+++.... +.||+.++|..+.+....
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~----------~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~-- 202 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQ----------SDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLE-- 202 (444)
T ss_pred cccccCHHHHHHHHHHHhhcc----------CCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHH--
Confidence 466766655544444333221 12369999999999999999998865 579999999876443211
Q ss_pred HHHHHHHHHHH---------------HcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccc---------cCC
Q 007190 247 ARRVRSLFQAA---------------KKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QNE 302 (613)
Q Consensus 247 ~~~vr~lf~~A---------------~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~---------~~~ 302 (613)
..+|..+ ......+|||||+|.|. ......|+..++.-. ...
T Consensus 203 ----~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~----------~~~q~~L~~~l~~~~~~~~g~~~~~~~ 268 (444)
T PRK15115 203 ----SELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMP----------APLQVKLLRVLQERKVRPLGSNRDIDI 268 (444)
T ss_pred ----HHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccCC----------HHHHHHHHHHHhhCCEEeCCCCceeee
Confidence 1222211 11223599999999993 334445555554211 123
Q ss_pred ceEEEeecCCCCCCChhhcCCCccce-------EEEccCCCHhhHHH----HHHHHhccC----C--C--CChhcHHHHH
Q 007190 303 GIILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGRQE----ILELYLQDK----P--L--ADDVDVKAIA 363 (613)
Q Consensus 303 ~ViVIaaTN~p~~Ld~aLlRpgRFd~-------~I~v~~Pd~~~R~~----IL~~~l~~~----~--l--~~d~dl~~la 363 (613)
++.+|++|+.+ ++..+.+ |+|.. .+.+..|...+|.+ +++++++.. . . -++..+..|.
T Consensus 269 ~~rii~~~~~~--l~~~~~~-~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~ 345 (444)
T PRK15115 269 DVRIISATHRD--LPKAMAR-GEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLM 345 (444)
T ss_pred eEEEEEeCCCC--HHHHHHc-CCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHH
Confidence 57889998853 4433333 55532 55677788888754 445555321 1 1 1333456666
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 007190 364 RGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEF 400 (613)
Q Consensus 364 ~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~ 400 (613)
...-.-+.++|++++++|... .....|+.+++..
T Consensus 346 ~~~WpgNvreL~~~i~~~~~~---~~~~~i~~~~l~~ 379 (444)
T PRK15115 346 TASWPGNVRQLVNVIEQCVAL---TSSPVISDALVEQ 379 (444)
T ss_pred hCCCCChHHHHHHHHHHHHHh---CCCCccChhhhhh
Confidence 655233678888888877654 3455788777753
No 223
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.80 E-value=1.2e-09 Score=99.55 Aligned_cols=109 Identities=29% Similarity=0.382 Sum_probs=58.8
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeEeecc-hhh-hhhhhhhHHHH-HHHHHHHHcCC---CeEEEEcCCCccccCC
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGS-EFE-EMFVGVGARRV-RSLFQAAKKKA---PCIIFIDEIDAVGSTR 277 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s-~~~-~~~~g~~~~~v-r~lf~~A~~~~---P~ILfIDEiD~l~~~r 277 (613)
++||.|+||+|||++|+++|+..+..|..+.+. ++. +...|...-.. ..-|.. ... ..|+++|||...
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~--~~GPif~~ill~DEiNra---- 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEF--RPGPIFTNILLADEINRA---- 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEE--EE-TT-SSEEEEETGGGS----
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEe--ecChhhhceeeecccccC----
Confidence 589999999999999999999999999888764 332 11111100000 000000 001 249999999877
Q ss_pred ccCCcccHHHHHHHHHHhhcc---------ccCCceEEEeecCCCC-----CCChhhcCCCcc
Q 007190 278 KQWEGHTKKTLHQLLVEMDGF---------EQNEGIILMAATNLPD-----ILDPALTRPGRF 326 (613)
Q Consensus 278 ~~~~~~~~~~l~~LL~~ldg~---------~~~~~ViVIaaTN~p~-----~Ld~aLlRpgRF 326 (613)
..++...||+.|..- .-...++||||-|..+ .|+.+++. ||
T Consensus 75 ------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 75 ------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp -------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred ------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 346677777777532 2245689999999765 57778877 77
No 224
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.79 E-value=1.5e-07 Score=101.41 Aligned_cols=203 Identities=22% Similarity=0.258 Sum_probs=130.5
Q ss_pred cccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc----CC-CeeEeecchhhhh--
Q 007190 169 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----GV-PFFYRAGSEFEEM-- 241 (613)
Q Consensus 169 ~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~----~~-pfi~is~s~~~~~-- 241 (613)
..+.|.+..+..+++++.. .+..+.+..++++|-||||||.+..-+-... .. ..++++|.++.+.
T Consensus 150 ~~l~gRe~e~~~v~~F~~~--------hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~a 221 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSL--------HLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASA 221 (529)
T ss_pred CCccchHHHHHHHHHHHHh--------hhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHH
Confidence 4568888888888777653 2234556789999999999999888665433 22 3478888764221
Q ss_pred -hh-----------hhh-HHHHHHHHHH-HHcCC-CeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEE
Q 007190 242 -FV-----------GVG-ARRVRSLFQA-AKKKA-PCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIIL 306 (613)
Q Consensus 242 -~~-----------g~~-~~~vr~lf~~-A~~~~-P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViV 306 (613)
|. +.+ .......|.. ..+.. +-++++||+|.|+.+. +.++..+.. +.. .++.++++
T Consensus 222 iF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~-------~~vLy~lFe-wp~-lp~sr~iL 292 (529)
T KOG2227|consen 222 IFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS-------QTVLYTLFE-WPK-LPNSRIIL 292 (529)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc-------cceeeeehh-ccc-CCcceeee
Confidence 11 111 1122233333 23333 6799999999997542 234444432 222 35678999
Q ss_pred EeecCCCCCCChhhcC----CCccceEEEccCCCHhhHHHHHHHHhccCCCCChh--cHHHHHhcCCCCCHHHHH---HH
Q 007190 307 MAATNLPDILDPALTR----PGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDV--DVKAIARGTPGFNGADLA---NL 377 (613)
Q Consensus 307 IaaTN~p~~Ld~aLlR----pgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~--dl~~la~~t~G~sgadL~---~l 377 (613)
||..|..+.=|..|.| .+--...+.|++++.++..+||...+......... .+...|+...|.|| |++ .+
T Consensus 293 iGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlRkaLdv 371 (529)
T KOG2227|consen 293 IGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLRKALDV 371 (529)
T ss_pred eeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHHHHHHH
Confidence 9999987655544432 12223488999999999999999999877655433 47778888888887 555 45
Q ss_pred HHHHHHHHHHhC
Q 007190 378 VNIAAIKAAVDG 389 (613)
Q Consensus 378 v~~Aa~~A~~~~ 389 (613)
|+.|...+..+.
T Consensus 372 ~R~aiEI~E~e~ 383 (529)
T KOG2227|consen 372 CRRAIEIAEIEK 383 (529)
T ss_pred HHHHHHHHHHHH
Confidence 666666655443
No 225
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.79 E-value=3.8e-08 Score=100.24 Aligned_cols=132 Identities=19% Similarity=0.242 Sum_probs=78.9
Q ss_pred CCCCCcccC-CCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhh
Q 007190 164 NVKTFKDVK-GCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFE 239 (613)
Q Consensus 164 ~~~~f~dV~-G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~ 239 (613)
...+|++.. +.+..+..+..+..+..+. . ....+++|+||||||||+|+.++|.++ +.++++++.+++.
T Consensus 67 ~~~tFdnf~~~~~~q~~al~~a~~~~~~~---~----~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~ 139 (244)
T PRK07952 67 QNCSFENYRVECEGQMNALSKARQYVEEF---D----GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIM 139 (244)
T ss_pred cCCccccccCCCchHHHHHHHHHHHHHhh---c----cCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHH
Confidence 345777765 3334433444444443321 1 112489999999999999999999987 7789999988887
Q ss_pred hhhhhhh---HHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCC
Q 007190 240 EMFVGVG---ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP 313 (613)
Q Consensus 240 ~~~~g~~---~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p 313 (613)
..+.... ......++.... ..++|+|||++.... .......+.+++..-- ...-.+|.+||..
T Consensus 140 ~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~~-----s~~~~~~l~~Ii~~Ry----~~~~~tiitSNl~ 205 (244)
T PRK07952 140 SAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQTE-----SRYEKVIINQIVDRRS----SSKRPTGMLTNSN 205 (244)
T ss_pred HHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCCC-----CHHHHHHHHHHHHHHH----hCCCCEEEeCCCC
Confidence 6543321 112234444433 457999999988631 1223445555554321 1223455578864
No 226
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.77 E-value=4e-08 Score=104.29 Aligned_cols=133 Identities=19% Similarity=0.305 Sum_probs=94.1
Q ss_pred CCCCceEEEEccCCChHHHHHHHHHHhcCC--------C-----------------eeEeecchh---hhh-hhhhhHHH
Q 007190 199 GKLPKGILLTGAPGTGKTLLAKAIAGEAGV--------P-----------------FFYRAGSEF---EEM-FVGVGARR 249 (613)
Q Consensus 199 ~~~p~gvLL~GPpGTGKT~LAralA~e~~~--------p-----------------fi~is~s~~---~~~-~~g~~~~~ 249 (613)
.+.|.++||+||+|+|||++|+.+|+.+.+ | |++++...- ... ....+...
T Consensus 18 ~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~ 97 (325)
T PRK08699 18 ERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDA 97 (325)
T ss_pred CCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHH
Confidence 478899999999999999999999997643 1 222322100 000 00123456
Q ss_pred HHHHHHHHHc----CCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCCCCChhhcCCCc
Q 007190 250 VRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGR 325 (613)
Q Consensus 250 vr~lf~~A~~----~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgR 325 (613)
+|++.+.+.. ....|++||+++.+ +....+.|++.++... .++.+|.+|+.++.+.+.+.+ |
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~L----------d~~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~S--R 163 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESM----------NLQAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIKS--R 163 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhC----------CHHHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHHH--H
Confidence 7777666653 33469999999998 4567788888888653 345667788888999999988 7
Q ss_pred cceEEEccCCCHhhHHHHHHH
Q 007190 326 FDRHIVVPNPDVRGRQEILEL 346 (613)
Q Consensus 326 Fd~~I~v~~Pd~~~R~~IL~~ 346 (613)
+ ..+.|++|+.++..+.|..
T Consensus 164 c-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 164 C-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred h-hhhcCCCCCHHHHHHHHHh
Confidence 7 6888999998887777754
No 227
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.77 E-value=3.9e-08 Score=109.05 Aligned_cols=206 Identities=22% Similarity=0.276 Sum_probs=118.4
Q ss_pred CcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhhhh-
Q 007190 168 FKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV- 243 (613)
Q Consensus 168 f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~~~- 243 (613)
+.+++|..+..+++.+.+..+.. .+..+++.|++||||+++|+++.... +.||+.++|..+.+...
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a~----------~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLSR----------SDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHhC----------cCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 45688988887777766654332 23369999999999999999998764 57999999987643221
Q ss_pred ----hhhH-------HHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccc---------cCCc
Q 007190 244 ----GVGA-------RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QNEG 303 (613)
Q Consensus 244 ----g~~~-------~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~---------~~~~ 303 (613)
|... ......|. ...+..|||||||.+. ......|+..++.-. ...+
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~ei~~l~----------~~~q~~ll~~l~~~~~~~~~~~~~~~~~ 269 (463)
T TIGR01818 203 SELFGHEKGAFTGANTRRQGRFE---QADGGTLFLDEIGDMP----------LDAQTRLLRVLADGEFYRVGGRTPIKVD 269 (463)
T ss_pred HHhcCCCCCCCCCcccCCCCcEE---ECCCCeEEEEchhhCC----------HHHHHHHHHHHhcCcEEECCCCceeeee
Confidence 1000 00001111 1235689999999993 233445555444211 1235
Q ss_pred eEEEeecCCCC-------CCChhhcCCCccceEEEccCCCHhhH----HHHHHHHhccC----C----CCChhcHHHHHh
Q 007190 304 IILMAATNLPD-------ILDPALTRPGRFDRHIVVPNPDVRGR----QEILELYLQDK----P----LADDVDVKAIAR 364 (613)
Q Consensus 304 ViVIaaTN~p~-------~Ld~aLlRpgRFd~~I~v~~Pd~~~R----~~IL~~~l~~~----~----l~~d~dl~~la~ 364 (613)
+.+|++|+..- .+.+.|.. |+. .+.+..|...+| ..++++++... . ..++..+..|..
T Consensus 270 ~rii~~~~~~l~~~~~~~~f~~~L~~--rl~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 346 (463)
T TIGR01818 270 VRIVAATHQNLEALVRQGKFREDLFH--RLN-VIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQ 346 (463)
T ss_pred eEEEEeCCCCHHHHHHcCCcHHHHHH--HhC-cceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHh
Confidence 77888887542 22223332 332 234455554444 44555554321 1 112333455555
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 007190 365 GTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAK 402 (613)
Q Consensus 365 ~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A~ 402 (613)
..---+-++|+++++++...+ ....|+.+|+...+
T Consensus 347 ~~wpgNvreL~~~~~~~~~~~---~~~~i~~~~l~~~~ 381 (463)
T TIGR01818 347 LRWPGNVRQLENLCRWLTVMA---SGDEVLVSDLPAEL 381 (463)
T ss_pred CCCCChHHHHHHHHHHHHHhC---CCCcccHHhchHHH
Confidence 432224588888888877544 44678888876443
No 228
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.76 E-value=2.1e-07 Score=104.30 Aligned_cols=210 Identities=16% Similarity=0.183 Sum_probs=121.2
Q ss_pred ccccCCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEee-c
Q 007190 157 KEVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRA-G 235 (613)
Q Consensus 157 ~~~~~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is-~ 235 (613)
.+|.+...+.+.+||+-..+-.++++.++.... .+....+-+||+||||||||++++.+|++++..+.+.. .
T Consensus 7 ~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~-------~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np 79 (519)
T PF03215_consen 7 EPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMF-------SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINP 79 (519)
T ss_pred CccchhcCCCCHHHhhccHHHHHHHHHHHHHHh-------ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCC
Confidence 467778888999999999876666666655311 12333457889999999999999999999988776542 2
Q ss_pred chhh------hhhhhhh------H---HHHHHH-HHHHHc-----------CCCeEEEEcCCCccccCCccCCcccHHHH
Q 007190 236 SEFE------EMFVGVG------A---RRVRSL-FQAAKK-----------KAPCIIFIDEIDAVGSTRKQWEGHTKKTL 288 (613)
Q Consensus 236 s~~~------~~~~g~~------~---~~vr~l-f~~A~~-----------~~P~ILfIDEiD~l~~~r~~~~~~~~~~l 288 (613)
..+. ..|.+.. . ....++ +..++. ..+.||+|||+-.+... .. ..+
T Consensus 80 ~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~------~~-~~f 152 (519)
T PF03215_consen 80 VSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHR------DT-SRF 152 (519)
T ss_pred CCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccch------hH-HHH
Confidence 2210 0111110 0 111222 111121 24679999999876432 11 333
Q ss_pred HHHHHHhhccccCC-ceEEEee-cC------CC--------CCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccC-
Q 007190 289 HQLLVEMDGFEQNE-GIILMAA-TN------LP--------DILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK- 351 (613)
Q Consensus 289 ~~LL~~ldg~~~~~-~ViVIaa-TN------~p--------~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~- 351 (613)
..+|...-.. ... .+|+|.+ |+ .. ..+++.++...++ .+|.|.+-...-..+.|+..+...
T Consensus 153 ~~~L~~~l~~-~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~E~ 230 (519)
T PF03215_consen 153 REALRQYLRS-SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRILKKEA 230 (519)
T ss_pred HHHHHHHHHc-CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHHHh
Confidence 3333332211 223 5666655 11 11 1356666653334 578888777766666666555433
Q ss_pred -------CCCChhc-HHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 007190 352 -------PLADDVD-VKAIARGTPGFNGADLANLVNIAAIKAA 386 (613)
Q Consensus 352 -------~l~~d~d-l~~la~~t~G~sgadL~~lv~~Aa~~A~ 386 (613)
......+ ++.|+..+ .+||+..++.....+.
T Consensus 231 ~~~~~~~~~p~~~~~l~~I~~~s----~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 231 RSSSGKNKVPDKQSVLDSIAESS----NGDIRSAINNLQFWCL 269 (519)
T ss_pred hhhcCCccCCChHHHHHHHHHhc----CchHHHHHHHHHHHhc
Confidence 1112222 66777754 4599999998777765
No 229
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.76 E-value=4.5e-08 Score=103.03 Aligned_cols=101 Identities=28% Similarity=0.389 Sum_probs=63.6
Q ss_pred CCCcccCCCH-HHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhh
Q 007190 166 KTFKDVKGCD-DAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM 241 (613)
Q Consensus 166 ~~f~dV~G~~-e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~ 241 (613)
.+|+++...+ ..++.+.....|+.+ |.. ...++|++|+||||||||+|+.|+|+++ |.++.+++.++|...
T Consensus 124 atf~~~~~~~~~~~~~~~~~~~fi~~---~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~ 198 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMAALDFLEA---YPP--GEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRE 198 (306)
T ss_pred CcHHHhcCCChHHHHHHHHHHHHHHH---hhc--cCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHH
Confidence 4677766443 222223333444432 211 2245799999999999999999999987 788888888887655
Q ss_pred hhhhh-HHHHHHHHHHHHcCCCeEEEEcCCCcc
Q 007190 242 FVGVG-ARRVRSLFQAAKKKAPCIIFIDEIDAV 273 (613)
Q Consensus 242 ~~g~~-~~~vr~lf~~A~~~~P~ILfIDEiD~l 273 (613)
+.... .....+.+...+ ...+|+|||+.+-
T Consensus 199 lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e 229 (306)
T PRK08939 199 LKNSISDGSVKEKIDAVK--EAPVLMLDDIGAE 229 (306)
T ss_pred HHHHHhcCcHHHHHHHhc--CCCEEEEecCCCc
Confidence 43221 112334444443 3469999999765
No 230
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.74 E-value=1e-07 Score=108.27 Aligned_cols=190 Identities=16% Similarity=0.161 Sum_probs=129.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC--CCeeEeecchhhhhhhhhh--HHHH--------HHHHHHHHcCCCeEEEEcCC
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAG--VPFFYRAGSEFEEMFVGVG--ARRV--------RSLFQAAKKKAPCIIFIDEI 270 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~--~pfi~is~s~~~~~~~g~~--~~~v--------r~lf~~A~~~~P~ILfIDEi 270 (613)
.||+|.|++||||++++++++.-+. .||+.+..+--....+|.. +..+ ..++..|.. .||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~---GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADG---GVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccC---CEEEecCc
Confidence 4899999999999999999999874 5888776554444444432 1111 122333322 49999999
Q ss_pred CccccCCccCCcccHHHHHHHHHHhhcc-----------ccCCceEEEeecCCC---CCCChhhcCCCccceEEEccCCC
Q 007190 271 DAVGSTRKQWEGHTKKTLHQLLVEMDGF-----------EQNEGIILMAATNLP---DILDPALTRPGRFDRHIVVPNPD 336 (613)
Q Consensus 271 D~l~~~r~~~~~~~~~~l~~LL~~ldg~-----------~~~~~ViVIaaTN~p---~~Ld~aLlRpgRFd~~I~v~~Pd 336 (613)
..+ ...++..|+.-|+.- .-...+++|++-|.. ..|+++++. ||+.++.++.|+
T Consensus 103 n~~----------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~~~~ 170 (584)
T PRK13406 103 ERL----------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLDGLA 170 (584)
T ss_pred ccC----------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcCCCC
Confidence 887 467888888888741 113457888874432 358899998 999999999887
Q ss_pred HhhH-------HHHHHH--HhccCCCCChhcHHHHHhc--CCCC-CHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 007190 337 VRGR-------QEILEL--YLQDKPLADDVDVKAIARG--TPGF-NGADLANLVNIAAIKAAVDGGEKLTATELEFAKDR 404 (613)
Q Consensus 337 ~~~R-------~~IL~~--~l~~~~l~~d~dl~~la~~--t~G~-sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A~~~ 404 (613)
..+. .+|.+. .+.+..+ ++..+..++.. .-|. |.+.-..+++-|...|+.++++.|+.+|+.+|..-
T Consensus 171 ~~~~~~~~~~~~~I~~AR~rl~~v~v-~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~Aa~l 249 (584)
T PRK13406 171 LRDAREIPIDADDIAAARARLPAVGP-PPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLALAARL 249 (584)
T ss_pred hHHhcccCCCHHHHHHHHHHHccCCC-CHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 5432 223322 2333332 23333433322 2254 77777889999999999999999999999999988
Q ss_pred HhcC
Q 007190 405 ILMG 408 (613)
Q Consensus 405 v~~g 408 (613)
++..
T Consensus 250 vL~h 253 (584)
T PRK13406 250 VLAP 253 (584)
T ss_pred HHHh
Confidence 7643
No 231
>PRK08181 transposase; Validated
Probab=98.73 E-value=8.8e-08 Score=98.98 Aligned_cols=99 Identities=19% Similarity=0.306 Sum_probs=63.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhhhhhhh-HHHHHHHHHHHHcCCCeEEEEcCCCccccCCc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGVG-ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRK 278 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~~~g~~-~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~ 278 (613)
.+++|+||||||||+||.+++.++ |..+++++..++...+.... .......+.... .+.+|+|||++.+...
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~~~-- 182 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVTKD-- 182 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEeccccccCC--
Confidence 579999999999999999999754 77889999888877543211 122333444433 4569999999987432
Q ss_pred cCCcccHHHHHHHHHHhhccccCCceEEEeecCCC
Q 007190 279 QWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP 313 (613)
Q Consensus 279 ~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p 313 (613)
......+.+++.... .+. -+|.|||.+
T Consensus 183 ---~~~~~~Lf~lin~R~---~~~--s~IiTSN~~ 209 (269)
T PRK08181 183 ---QAETSVLFELISARY---ERR--SILITANQP 209 (269)
T ss_pred ---HHHHHHHHHHHHHHH---hCC--CEEEEcCCC
Confidence 122334444444322 222 355577765
No 232
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.70 E-value=7e-08 Score=106.26 Aligned_cols=200 Identities=25% Similarity=0.298 Sum_probs=118.5
Q ss_pred ccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhhhhhhh
Q 007190 170 DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGVG 246 (613)
Q Consensus 170 dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~~~g~~ 246 (613)
.++|.....+.+.+.+.++.. ....++++|++||||+++|+++.... +.||+.++|+.+.+.....
T Consensus 140 ~lig~s~~~~~~~~~i~~~~~----------~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~- 208 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAP----------SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLES- 208 (441)
T ss_pred ceEecCHHHHHHHHHHhhccC----------CCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHH-
Confidence 467777766666554443322 23479999999999999999998654 5799999998764432211
Q ss_pred HHHHHHHHHH---------------HHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccc---------cCC
Q 007190 247 ARRVRSLFQA---------------AKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QNE 302 (613)
Q Consensus 247 ~~~vr~lf~~---------------A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~---------~~~ 302 (613)
.+|.. .....+.+|||||||.+. ......|+..++.-. ...
T Consensus 209 -----~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~----------~~~q~~l~~~l~~~~~~~~~~~~~~~~ 273 (441)
T PRK10365 209 -----ELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDIS----------PMMQVRLLRAIQEREVQRVGSNQTISV 273 (441)
T ss_pred -----HhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccCC----------HHHHHHHHHHHccCcEEeCCCCceeee
Confidence 11111 112235699999999993 234455555554311 112
Q ss_pred ceEEEeecCCCCCCChhhcCCCccce-------EEEccCCCHhhHHH----HHHHHhccC----CC----CChhcHHHHH
Q 007190 303 GIILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGRQE----ILELYLQDK----PL----ADDVDVKAIA 363 (613)
Q Consensus 303 ~ViVIaaTN~p~~Ld~aLlRpgRFd~-------~I~v~~Pd~~~R~~----IL~~~l~~~----~l----~~d~dl~~la 363 (613)
++.+|++|+.+- .....+|+|.. .+.+..|...+|.+ ++++++.+. .. .++..+..|.
T Consensus 274 ~~rii~~t~~~~---~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~ 350 (441)
T PRK10365 274 DVRLIAATHRDL---AAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLI 350 (441)
T ss_pred ceEEEEeCCCCH---HHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHH
Confidence 467888887642 13334456643 56677777776654 455554431 11 1233355555
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 007190 364 RGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFA 401 (613)
Q Consensus 364 ~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A 401 (613)
...---+.++|+++++++... .....|+.+++...
T Consensus 351 ~~~wpgN~reL~~~~~~~~~~---~~~~~i~~~~l~~~ 385 (441)
T PRK10365 351 HYDWPGNIRELENAVERAVVL---LTGEYISERELPLA 385 (441)
T ss_pred hCCCCCHHHHHHHHHHHHHHh---CCCCccchHhCchh
Confidence 544222567778888776654 34567888777543
No 233
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.69 E-value=1.9e-07 Score=92.53 Aligned_cols=164 Identities=26% Similarity=0.317 Sum_probs=88.1
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCC---CeeEeec-chh-h---hhh-------------h-----------------
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEAGV---PFFYRAG-SEF-E---EMF-------------V----------------- 243 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~~~---pfi~is~-s~~-~---~~~-------------~----------------- 243 (613)
...++|+||+|+|||+|++.+.....- ..++++. ... . ..+ .
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 357999999999999999999998732 2222221 110 0 000 0
Q ss_pred hhhHHHHHHHHHHHHcCC-CeEEEEcCCCccc-cCCccCCcccHHHHHHHHHHhhccccCCce-EEEeecCCC---C--C
Q 007190 244 GVGARRVRSLFQAAKKKA-PCIIFIDEIDAVG-STRKQWEGHTKKTLHQLLVEMDGFEQNEGI-ILMAATNLP---D--I 315 (613)
Q Consensus 244 g~~~~~vr~lf~~A~~~~-P~ILfIDEiD~l~-~~r~~~~~~~~~~l~~LL~~ldg~~~~~~V-iVIaaTN~p---~--~ 315 (613)
......+..++....+.. ..||+|||+|.+. ... .....+..|...++......++ +|+++++.. + .
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~ 174 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE-----EDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLD 174 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT-----TTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc-----chHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhc
Confidence 112344556666655443 4899999999996 211 2345556666666653334443 344444311 1 1
Q ss_pred CChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCC-C-CChhcHHHHHhcCCCCCHHHH
Q 007190 316 LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKP-L-ADDVDVKAIARGTPGFNGADL 374 (613)
Q Consensus 316 Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~-l-~~d~dl~~la~~t~G~sgadL 374 (613)
-...+. +|+.. +.+++.+.++..++++..+.... + .++.+++.+...+.|. |+-|
T Consensus 175 ~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~-P~~l 231 (234)
T PF01637_consen 175 DKSPLF--GRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGN-PRYL 231 (234)
T ss_dssp TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT--HHHH
T ss_pred ccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCC-HHHH
Confidence 112222 47766 99999999999999999876651 1 2566778888888773 4444
No 234
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.67 E-value=1.3e-07 Score=100.56 Aligned_cols=69 Identities=26% Similarity=0.507 Sum_probs=49.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhhhhhhh---HHHHHHHHHHHHcCCCeEEEEcCCCcc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGVG---ARRVRSLFQAAKKKAPCIIFIDEIDAV 273 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~~~g~~---~~~vr~lf~~A~~~~P~ILfIDEiD~l 273 (613)
.+++|+||||||||+||.|+|+++ +..+++++..++...+.... .......+.... ...+|+|||+...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e 258 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTE 258 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCC
Confidence 589999999999999999999986 77899999988866543211 111112233333 3469999999876
No 235
>PF13173 AAA_14: AAA domain
Probab=98.65 E-value=2e-07 Score=85.47 Aligned_cols=69 Identities=30% Similarity=0.323 Sum_probs=48.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC--CCeeEeecchhhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCcc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAG--VPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAV 273 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~--~pfi~is~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l 273 (613)
+.++|+||+|+|||++++.+++... ..++++++.+.......... +.+.+.......+.+|||||++.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 4689999999999999999999876 77888888776543211111 223333322235679999999988
No 236
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.65 E-value=1.7e-07 Score=97.83 Aligned_cols=207 Identities=24% Similarity=0.359 Sum_probs=122.5
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhh
Q 007190 164 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEE 240 (613)
Q Consensus 164 ~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~ 240 (613)
....|+.+++.....+.+.+-...+.- ..-.+|+.|..||||-++||+..... ..||+.+||..+.+
T Consensus 199 ~~~~F~~~v~~S~~mk~~v~qA~k~Am----------lDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe 268 (511)
T COG3283 199 DVSGFEQIVAVSPKMKHVVEQAQKLAM----------LDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPE 268 (511)
T ss_pred cccchHHHhhccHHHHHHHHHHHHhhc----------cCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCch
Confidence 345699999988876666554432221 11249999999999999999997654 68999999988754
Q ss_pred hh-----hhh--hHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhh-c-cc-------cCCce
Q 007190 241 MF-----VGV--GARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMD-G-FE-------QNEGI 304 (613)
Q Consensus 241 ~~-----~g~--~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ld-g-~~-------~~~~V 304 (613)
.. .|. +.+--..+|+.|..+ .+|+|||..+. ......||..+. | |. -.-+|
T Consensus 269 ~~aEsElFG~apg~~gk~GffE~AngG---TVlLDeIgEmS----------p~lQaKLLRFL~DGtFRRVGee~Ev~vdV 335 (511)
T COG3283 269 DAAESELFGHAPGDEGKKGFFEQANGG---TVLLDEIGEMS----------PRLQAKLLRFLNDGTFRRVGEDHEVHVDV 335 (511)
T ss_pred hHhHHHHhcCCCCCCCccchhhhccCC---eEEeehhhhcC----------HHHHHHHHHHhcCCceeecCCcceEEEEE
Confidence 31 121 123345688887666 79999998872 234445555543 2 11 12358
Q ss_pred EEEeecCCCCCCChhhcCCCccce-------EEEccCCCHhhHHH----HHHHHh----ccCCCC-Chhc---HHHHHhc
Q 007190 305 ILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGRQE----ILELYL----QDKPLA-DDVD---VKAIARG 365 (613)
Q Consensus 305 iVIaaTN~p~~Ld~aLlRpgRFd~-------~I~v~~Pd~~~R~~----IL~~~l----~~~~l~-~d~d---l~~la~~ 365 (613)
.|||||..+-. .+...|+|.. ++.+..|...+|.. +.+.++ .+.... +..+ +..+.+.
T Consensus 336 RVIcatq~nL~---~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y 412 (511)
T COG3283 336 RVICATQVNLV---ELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRY 412 (511)
T ss_pred EEEecccccHH---HHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHc
Confidence 99999987521 1222233322 66777777777753 333333 333222 2222 3333333
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 007190 366 TPGFNGADLANLVNIAAIKAAVDGGEKLTATELE 399 (613)
Q Consensus 366 t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~ 399 (613)
----+.+++.|.+-+|+.. -....++.+++.
T Consensus 413 ~WpGNVRqL~N~iyRA~s~---~Eg~~l~i~~i~ 443 (511)
T COG3283 413 AWPGNVRQLKNAIYRALTL---LEGYELRIEDIL 443 (511)
T ss_pred CCCccHHHHHHHHHHHHHH---hccCccchhhcc
Confidence 2112457777777766543 234566666664
No 237
>PRK06526 transposase; Provisional
Probab=98.64 E-value=7.8e-08 Score=98.69 Aligned_cols=100 Identities=20% Similarity=0.337 Sum_probs=62.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhhhhhhh-HHHHHHHHHHHHcCCCeEEEEcCCCccccCC
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGVG-ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTR 277 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~~~g~~-~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r 277 (613)
+.+++|+||||||||+||.+++.++ |..+.+++..++........ .......+... ..+.+|+|||++.+...
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~~- 174 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPFE- 174 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCCC-
Confidence 4589999999999999999998875 67777777777766542211 11222223222 34579999999987322
Q ss_pred ccCCcccHHHHHHHHHHhhccccCCceEEEeecCCC
Q 007190 278 KQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP 313 (613)
Q Consensus 278 ~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p 313 (613)
......+.+++.... .+. .+|.+||.|
T Consensus 175 ----~~~~~~L~~li~~r~---~~~--s~IitSn~~ 201 (254)
T PRK06526 175 ----PEAANLFFQLVSSRY---ERA--SLIVTSNKP 201 (254)
T ss_pred ----HHHHHHHHHHHHHHH---hcC--CEEEEcCCC
Confidence 112334445554322 222 255678865
No 238
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.58 E-value=5.9e-08 Score=108.11 Aligned_cols=179 Identities=27% Similarity=0.409 Sum_probs=108.8
Q ss_pred eEEEEccCCChHHHHHHHHHHhc--CCCeeEeecchhhhhh-----hh--------hhHHHHHHHHHHHHcCCCeEEEEc
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEA--GVPFFYRAGSEFEEMF-----VG--------VGARRVRSLFQAAKKKAPCIIFID 268 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~--~~pfi~is~s~~~~~~-----~g--------~~~~~vr~lf~~A~~~~P~ILfID 268 (613)
.+|+.|.|||||-.|+|++.... ..||+.++|.-+.+.. .| ...+-.+..+.+|..+ .+|+|
T Consensus 338 pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gG---tlFld 414 (606)
T COG3284 338 PVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGG---TLFLD 414 (606)
T ss_pred CeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCC---ccHHH
Confidence 59999999999999999997754 5799999997764432 22 1222233344444333 89999
Q ss_pred CCCccccCCccCCcccHHHHHHHHHHhh--------ccccCCceEEEeecCCCCCCChhhcCCCccce-------EEEcc
Q 007190 269 EIDAVGSTRKQWEGHTKKTLHQLLVEMD--------GFEQNEGIILMAATNLPDILDPALTRPGRFDR-------HIVVP 333 (613)
Q Consensus 269 EiD~l~~~r~~~~~~~~~~l~~LL~~ld--------g~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~-------~I~v~ 333 (613)
||..+. -.....||..+. +-...-.|-||+||+++-. .|.+.|||.+ ...+.
T Consensus 415 eIgd~p----------~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~---~lv~~g~fredLyyrL~~~~i~ 481 (606)
T COG3284 415 EIGDMP----------LALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLA---QLVEQGRFREDLYYRLNAFVIT 481 (606)
T ss_pred Hhhhch----------HHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHH---HHHHcCCchHHHHHHhcCeeec
Confidence 999882 233344554443 2233446899999997533 6777788865 44556
Q ss_pred CCCHhhHH---HHHHHHhccCC-----CCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 007190 334 NPDVRGRQ---EILELYLQDKP-----LADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAK 402 (613)
Q Consensus 334 ~Pd~~~R~---~IL~~~l~~~~-----l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A~ 402 (613)
+|...+|. ..|.+++.+.. ++++.-...++-.-+| +-++|.++++.++. ......|...|+...+
T Consensus 482 lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPG-Nirel~~v~~~~~~---l~~~g~~~~~dlp~~l 554 (606)
T COG3284 482 LPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPG-NIRELDNVIERLAA---LSDGGRIRVSDLPPEL 554 (606)
T ss_pred cCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCC-cHHHHHHHHHHHHH---cCCCCeeEcccCCHHH
Confidence 67766664 34555444322 1122112233444454 56777777776654 3455556666665443
No 239
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.58 E-value=4.1e-07 Score=93.37 Aligned_cols=71 Identities=27% Similarity=0.436 Sum_probs=50.5
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhhhhhhhHH-HHH-HHHHHHHcCCCeEEEEcCCCcc
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGVGAR-RVR-SLFQAAKKKAPCIIFIDEIDAV 273 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~~~g~~~~-~vr-~lf~~A~~~~P~ILfIDEiD~l 273 (613)
.+.+++|+||||||||+||-|+++++ |.++++++.+++.......... ... .+....+ ...+|+|||+.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~--~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELK--KVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhh--cCCEEEEecccCc
Confidence 34689999999999999999999876 7889999999887653322111 111 1222122 3459999999876
No 240
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=8.4e-07 Score=92.30 Aligned_cols=123 Identities=19% Similarity=0.207 Sum_probs=85.5
Q ss_pred CCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeec--------chhhhhh-hh----hhHHHHHHHHHHHHc----C
Q 007190 198 GGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAG--------SEFEEMF-VG----VGARRVRSLFQAAKK----K 260 (613)
Q Consensus 198 g~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~--------s~~~~~~-~g----~~~~~vr~lf~~A~~----~ 260 (613)
.++.|...||+||+|+||+.+|.++|..+-+.--.-+| .|+...+ .+ .+...+|++.+.+.. .
T Consensus 15 ~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~ 94 (290)
T PRK05917 15 DQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYES 94 (290)
T ss_pred cCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCC
Confidence 46788999999999999999999999977542100011 1110000 00 123445555555432 3
Q ss_pred CCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCC
Q 007190 261 APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNP 335 (613)
Q Consensus 261 ~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~P 335 (613)
...|++||++|.+ .....|.||+.++. +..++++|..|+.++.|.|.+++ |+ ..+.|+++
T Consensus 95 ~~kv~ii~~ad~m----------t~~AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~S--Rc-q~~~~~~~ 154 (290)
T PRK05917 95 PYKIYIIHEADRM----------TLDAISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRS--RS-LSIHIPME 154 (290)
T ss_pred CceEEEEechhhc----------CHHHHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHh--cc-eEEEccch
Confidence 3469999999999 46788999999994 66778888888889999999988 87 56667654
No 241
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=4.1e-07 Score=106.07 Aligned_cols=129 Identities=26% Similarity=0.339 Sum_probs=94.7
Q ss_pred cccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhh----
Q 007190 169 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM---- 241 (613)
Q Consensus 169 ~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~---- 241 (613)
+.|+|++++...+.+.|..-+..-. + .+++-.+||.||.|+|||-||+++|..+ .-.|+.++.++|.+.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~--~--~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskli 637 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLK--D--PNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLI 637 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccC--C--CCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhcc
Confidence 3589999999999998876443211 0 0356679999999999999999999976 456999999987551
Q ss_pred -----hhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhcccc---------CCceEEE
Q 007190 242 -----FVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQ---------NEGIILM 307 (613)
Q Consensus 242 -----~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~---------~~~ViVI 307 (613)
|+|. .....+.+..+...-+||+|||||.- ....++.|++.+|...- -.++|||
T Consensus 638 gsp~gyvG~--e~gg~LteavrrrP~sVVLfdeIEkA----------h~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~I 705 (898)
T KOG1051|consen 638 GSPPGYVGK--EEGGQLTEAVKRRPYSVVLFEEIEKA----------HPDVLNILLQLLDRGRLTDSHGREVDFKNAIFI 705 (898)
T ss_pred CCCcccccc--hhHHHHHHHHhcCCceEEEEechhhc----------CHHHHHHHHHHHhcCccccCCCcEeeccceEEE
Confidence 2222 33446777777777799999999976 45677777777775422 2358999
Q ss_pred eecCCC
Q 007190 308 AATNLP 313 (613)
Q Consensus 308 aaTN~p 313 (613)
.|+|.-
T Consensus 706 MTsn~~ 711 (898)
T KOG1051|consen 706 MTSNVG 711 (898)
T ss_pred Eecccc
Confidence 998853
No 242
>PRK09183 transposase/IS protein; Provisional
Probab=98.57 E-value=2.5e-07 Score=95.22 Aligned_cols=71 Identities=30% Similarity=0.437 Sum_probs=50.3
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhhhhhh-hHHHHHHHHHHHHcCCCeEEEEcCCCcc
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGV-GARRVRSLFQAAKKKAPCIIFIDEIDAV 273 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~~~g~-~~~~vr~lf~~A~~~~P~ILfIDEiD~l 273 (613)
..+++|+||||||||+||.+++.++ |..+.++++.++...+... ....+...|... ...+++++|||++..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 3579999999999999999997654 7778888887776543221 112234445443 245679999999876
No 243
>PRK06921 hypothetical protein; Provisional
Probab=98.57 E-value=3.8e-07 Score=94.31 Aligned_cols=68 Identities=31% Similarity=0.344 Sum_probs=47.1
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc----CCCeeEeecchhhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCc
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDA 272 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~----~~pfi~is~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~ 272 (613)
..+++|+||||||||+|+.|+|+++ +..+++++..++........ ......+... ....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEecccc
Confidence 4689999999999999999999975 67788888777655432211 1122222332 2346999999954
No 244
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.54 E-value=1.7e-06 Score=94.93 Aligned_cols=212 Identities=15% Similarity=0.164 Sum_probs=117.1
Q ss_pred cccccCCCCCCCCcccCCCHHHHHHHHHHHHH--hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEe
Q 007190 156 NKEVMPEKNVKTFKDVKGCDDAKQELVEVVEY--LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 233 (613)
Q Consensus 156 ~~~~~~~~~~~~f~dV~G~~e~k~~L~eiv~~--l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~i 233 (613)
...|+.+..+.+.++++-..+-..++++++.. ...|.. ..+-+||+||+|||||+.++.++.++|..+++.
T Consensus 69 ~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l-------~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew 141 (634)
T KOG1970|consen 69 FELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKL-------GSRILLLTGPSGCGKSTTVKVLSKELGYQLIEW 141 (634)
T ss_pred cchhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCC-------CceEEEEeCCCCCCchhHHHHHHHhhCceeeee
Confidence 34566777777899988765544444443331 112211 224689999999999999999999999887765
Q ss_pred ecc-------------hhhhhhhhhhHHHHHHHHHHHH------------cCCCeEEEEcCCCccccCCccCCcccHHHH
Q 007190 234 AGS-------------EFEEMFVGVGARRVRSLFQAAK------------KKAPCIIFIDEIDAVGSTRKQWEGHTKKTL 288 (613)
Q Consensus 234 s~s-------------~~~~~~~g~~~~~vr~lf~~A~------------~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l 288 (613)
+.. .+........-.....+...+. ..+|.+|+|||+-..... +....+
T Consensus 142 ~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~------d~~~~f 215 (634)
T KOG1970|consen 142 SNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYR------DDSETF 215 (634)
T ss_pred cCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhh------hhHHHH
Confidence 411 1111011111112222222231 134679999999776433 134455
Q ss_pred HHHHHHhhccccCCceEEEeecCCCCCCChhhcCC------CccceEEEccCCCHhhHHHHHHHHhccCC--C-----CC
Q 007190 289 HQLLVEMDGFEQNEGIILMAATNLPDILDPALTRP------GRFDRHIVVPNPDVRGRQEILELYLQDKP--L-----AD 355 (613)
Q Consensus 289 ~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRp------gRFd~~I~v~~Pd~~~R~~IL~~~l~~~~--l-----~~ 355 (613)
...|.++-......-|++|.-++.++..++..+.+ .|. ..|.|.+-...--.+.|+.++.... . ..
T Consensus 216 ~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri-~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~ 294 (634)
T KOG1970|consen 216 REVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI-SNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPD 294 (634)
T ss_pred HHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCc-ceEeecCCcHHHHHHHHHHHHHHhcccccCCcCch
Confidence 55555444333333234443344444444333322 133 3677777666666666666664322 1 12
Q ss_pred hhcHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 007190 356 DVDVKAIARGTPGFNGADLANLVNIAAIKA 385 (613)
Q Consensus 356 d~dl~~la~~t~G~sgadL~~lv~~Aa~~A 385 (613)
...++.++.. +++||+..++...+.+
T Consensus 295 ~~~v~~i~~~----s~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 295 TAEVELICQG----SGGDIRSAINSLQLSS 320 (634)
T ss_pred hHHHHHHHHh----cCccHHHHHhHhhhhc
Confidence 3335555553 5569999999887765
No 245
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.51 E-value=1.4e-07 Score=91.64 Aligned_cols=71 Identities=28% Similarity=0.436 Sum_probs=48.5
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhhhhhhh-HHHHHHHHHHHHcCCCeEEEEcCCCcc
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGVG-ARRVRSLFQAAKKKAPCIIFIDEIDAV 273 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~~~g~~-~~~vr~lf~~A~~~~P~ILfIDEiD~l 273 (613)
.+.+++|+||||||||+||.+++.++ |.++.+++.+++........ .....+.+..... +.+|+|||+...
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~--~dlLilDDlG~~ 120 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKR--VDLLILDDLGYE 120 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHT--SSCEEEETCTSS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcccc--ccEeccccccee
Confidence 34689999999999999999999865 88899999988876543221 1122344444443 359999999754
No 246
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.48 E-value=4.8e-07 Score=82.23 Aligned_cols=99 Identities=23% Similarity=0.359 Sum_probs=61.1
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc--------CCCeeEeecchhhh--hhh-------h-------hhHHHHHHHHHHH
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEA--------GVPFFYRAGSEFEE--MFV-------G-------VGARRVRSLFQAA 257 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~--------~~pfi~is~s~~~~--~~~-------g-------~~~~~vr~lf~~A 257 (613)
.+.++++||||+|||++++.++... +.+++.+++..... .+. + ......+.+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 3579999999999999999999987 67888887654431 110 0 1122233344444
Q ss_pred HcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecC
Q 007190 258 KKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATN 311 (613)
Q Consensus 258 ~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN 311 (613)
......+|+|||+|.+. ....++.|...++ ..+-.++++|+.+
T Consensus 84 ~~~~~~~lviDe~~~l~---------~~~~l~~l~~l~~--~~~~~vvl~G~~~ 126 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF---------SDEFLEFLRSLLN--ESNIKVVLVGTPE 126 (131)
T ss_dssp HHCTEEEEEEETTHHHH---------THHHHHHHHHHTC--SCBEEEEEEESST
T ss_pred HhcCCeEEEEeChHhcC---------CHHHHHHHHHHHh--CCCCeEEEEEChh
Confidence 44544699999999984 1456666665555 3444566666553
No 247
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.46 E-value=8e-06 Score=82.43 Aligned_cols=184 Identities=23% Similarity=0.281 Sum_probs=119.1
Q ss_pred eEEEEccCCChHHHHHHHHHHhcC---CCeeEeecchh-----hhhhhhh------------hHHHHHHHHHHHHc-CCC
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAG---VPFFYRAGSEF-----EEMFVGV------------GARRVRSLFQAAKK-KAP 262 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~---~pfi~is~s~~-----~~~~~g~------------~~~~vr~lf~~A~~-~~P 262 (613)
-+.++|+-|+|||+++|++....+ +-.++++...+ .+.++-+ ..+.-+.+....++ ..|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 478999999999999998777654 22344443322 2222111 12223344444444 456
Q ss_pred eEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCCCCChhhcCC------CccceEEEccCCC
Q 007190 263 CIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRP------GRFDRHIVVPNPD 336 (613)
Q Consensus 263 ~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRp------gRFd~~I~v~~Pd 336 (613)
.++++||.+.+... .-..+.-|.+.-+++...-+|+.||-.. |.+.+++| -|++..|.+++.+
T Consensus 133 v~l~vdEah~L~~~-------~le~Lrll~nl~~~~~~~l~ivL~Gqp~----L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 133 VVLMVDEAHDLNDS-------ALEALRLLTNLEEDSSKLLSIVLIGQPK----LRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred eEEeehhHhhhChh-------HHHHHHHHHhhcccccCceeeeecCCcc----cchhhchHHHHhhhheEEEEEecCCcC
Confidence 89999999998432 2333433433333344445577776543 33322221 2787778999999
Q ss_pred HhhHHHHHHHHhccCC----CCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 007190 337 VRGRQEILELYLQDKP----LADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELE 399 (613)
Q Consensus 337 ~~~R~~IL~~~l~~~~----l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~ 399 (613)
.++-...++++++.-. +..+..+..+...+.| .|+-|.++|..|...|...+.+.|+...++
T Consensus 202 ~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 202 EAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred hHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 9999999999987643 3345557778888887 688999999999999888888888876653
No 248
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.45 E-value=1.2e-06 Score=100.20 Aligned_cols=220 Identities=23% Similarity=0.270 Sum_probs=118.9
Q ss_pred CcccCCCHHHHHHHHHHHHHhcCchhhhhcCC--CCCceEEEEccCCChHHHHHHHHHHhcCCCeeE-eecchhhhhhhh
Q 007190 168 FKDVKGCDDAKQELVEVVEYLKNPSKFTRLGG--KLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFY-RAGSEFEEMFVG 244 (613)
Q Consensus 168 f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~--~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~-is~s~~~~~~~g 244 (613)
.-.|.|++.+|+.+.-.+ +--..+...-|. +-.-+|||.|.||||||.|.+.+++-+...++. ..++. -+|
T Consensus 285 aPsIyG~e~VKkAilLqL--fgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss----~~G 358 (682)
T COG1241 285 APSIYGHEDVKKAILLQL--FGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSS----AAG 358 (682)
T ss_pred cccccCcHHHHHHHHHHh--cCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEcccccc----ccC
Confidence 445678887776663222 222111111111 222579999999999999999999877654432 11221 112
Q ss_pred hhHHHHHHHH--H---HH---HcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccc-----------cCCceE
Q 007190 245 VGARRVRSLF--Q---AA---KKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE-----------QNEGII 305 (613)
Q Consensus 245 ~~~~~vr~lf--~---~A---~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~-----------~~~~Vi 305 (613)
.++..+++-+ + .| .-..+.|.+|||+|.+- ....+.+...|+... -+...-
T Consensus 359 LTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~----------~~dr~aihEaMEQQtIsIaKAGI~atLnARcs 428 (682)
T COG1241 359 LTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMN----------EEDRVAIHEAMEQQTISIAKAGITATLNARCS 428 (682)
T ss_pred ceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCC----------hHHHHHHHHHHHhcEeeecccceeeecchhhh
Confidence 2222222211 0 00 01225699999999982 223334555555321 123456
Q ss_pred EEeecCCCC-------------CCChhhcCCCccceEEEc-cCCCHhhHHH----HHHHHhccC----------------
Q 007190 306 LMAATNLPD-------------ILDPALTRPGRFDRHIVV-PNPDVRGRQE----ILELYLQDK---------------- 351 (613)
Q Consensus 306 VIaaTN~p~-------------~Ld~aLlRpgRFd~~I~v-~~Pd~~~R~~----IL~~~l~~~---------------- 351 (613)
|+||+|... .|++.|++ |||..+.+ +.|+.+.-.. |+..|....
T Consensus 429 vLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~ 506 (682)
T COG1241 429 VLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEER 506 (682)
T ss_pred hhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCccchHHHHHHHHHHHhccccccccccccccccccC
Confidence 888999764 47788998 99997655 4677653333 333332110
Q ss_pred -----------------CCCChhcHHHHH-------h--------cCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 007190 352 -----------------PLADDVDVKAIA-------R--------GTPGFNGADLANLVNIAAIKAAVDGGEKLTATELE 399 (613)
Q Consensus 352 -----------------~l~~d~dl~~la-------~--------~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~ 399 (613)
+.-.+...+.|. + .+-..|.++|+.+++-|-..|..+-++.|+.+|++
T Consensus 507 ~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~~ 586 (682)
T COG1241 507 DFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEEEDVD 586 (682)
T ss_pred cHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 111111111111 0 11225667777777777777777777777777777
Q ss_pred HHHHHH
Q 007190 400 FAKDRI 405 (613)
Q Consensus 400 ~A~~~v 405 (613)
+|++-+
T Consensus 587 eAi~lv 592 (682)
T COG1241 587 EAIRLV 592 (682)
T ss_pred HHHHHH
Confidence 776543
No 249
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.41 E-value=6.9e-06 Score=85.70 Aligned_cols=130 Identities=16% Similarity=0.174 Sum_probs=87.2
Q ss_pred CCCCCceEEEEccCCChHHHHHHHHHHhcCCC-------eeEe---------ecchhhhhh-hh--hhHHHHHHHHHHHH
Q 007190 198 GGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP-------FFYR---------AGSEFEEMF-VG--VGARRVRSLFQAAK 258 (613)
Q Consensus 198 g~~~p~gvLL~GPpGTGKT~LAralA~e~~~p-------fi~i---------s~s~~~~~~-~g--~~~~~vr~lf~~A~ 258 (613)
..+.|.+.||+|| +||+++|+++|..+-+. +=.+ +..|+.... .| .....+|++...+.
T Consensus 20 ~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~ 97 (290)
T PRK07276 20 QDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFS 97 (290)
T ss_pred cCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHh
Confidence 3578889999996 68999999999866331 1000 011111000 01 12355666655543
Q ss_pred c----CCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccC
Q 007190 259 K----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPN 334 (613)
Q Consensus 259 ~----~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~ 334 (613)
. ....|++||++|.+ .....|.||+.++. +..++++|..|+.++.|-|.+++ |+ ..+.|+.
T Consensus 98 ~~p~~~~~kV~II~~ad~m----------~~~AaNaLLKtLEE--Pp~~t~~iL~t~~~~~lLpTI~S--Rc-q~i~f~~ 162 (290)
T PRK07276 98 QSGYEGKQQVFIIKDADKM----------HVNAANSLLKVIEE--PQSEIYIFLLTNDENKVLPTIKS--RT-QIFHFPK 162 (290)
T ss_pred hCcccCCcEEEEeehhhhc----------CHHHHHHHHHHhcC--CCCCeEEEEEECChhhCchHHHH--cc-eeeeCCC
Confidence 2 23469999999999 46788999999994 66667888888889999999998 88 6778865
Q ss_pred CCHhhHHHHHH
Q 007190 335 PDVRGRQEILE 345 (613)
Q Consensus 335 Pd~~~R~~IL~ 345 (613)
+.+...+++.
T Consensus 163 -~~~~~~~~L~ 172 (290)
T PRK07276 163 -NEAYLIQLLE 172 (290)
T ss_pred -cHHHHHHHHH
Confidence 4455445543
No 250
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.40 E-value=1.3e-06 Score=90.68 Aligned_cols=134 Identities=23% Similarity=0.373 Sum_probs=75.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCC-C--eeEeecchhhhhhhhhhHHHHHHHHHHH-----------HcCCCeEEEEc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAGV-P--FFYRAGSEFEEMFVGVGARRVRSLFQAA-----------KKKAPCIIFID 268 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~~-p--fi~is~s~~~~~~~g~~~~~vr~lf~~A-----------~~~~P~ILfID 268 (613)
+++||+||+|||||++++.+-.+..- . ...++++.... ...++.+.+.. ..++.+|+|||
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tt------s~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiD 107 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTT------SNQLQKIIESKLEKRRGRVYGPPGGKKLVLFID 107 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHH------HHHHHHCCCTTECECTTEEEEEESSSEEEEEEE
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCC------HHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEec
Confidence 47999999999999999998776543 2 22334433211 12222222211 12234799999
Q ss_pred CCCccccCCccCCcccHHHHHHHHHHh-h--ccccC--------CceEEEeecCCCC---CCChhhcCCCccceEEEccC
Q 007190 269 EIDAVGSTRKQWEGHTKKTLHQLLVEM-D--GFEQN--------EGIILMAATNLPD---ILDPALTRPGRFDRHIVVPN 334 (613)
Q Consensus 269 EiD~l~~~r~~~~~~~~~~l~~LL~~l-d--g~~~~--------~~ViVIaaTN~p~---~Ld~aLlRpgRFd~~I~v~~ 334 (613)
|++.-.... +..+...+||+++ + |+... .++.++||+|.+. .+++.++| .| ..+.++.
T Consensus 108 DlN~p~~d~-----ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~~~~ 179 (272)
T PF12775_consen 108 DLNMPQPDK-----YGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF-NILNIPY 179 (272)
T ss_dssp TTT-S---T-----TS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TE-EEEE---
T ss_pred ccCCCCCCC-----CCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--he-EEEEecC
Confidence 998663321 2222233444442 2 33221 3578889988643 46778887 66 6899999
Q ss_pred CCHhhHHHHHHHHhcc
Q 007190 335 PDVRGRQEILELYLQD 350 (613)
Q Consensus 335 Pd~~~R~~IL~~~l~~ 350 (613)
|+.+....|+..++..
T Consensus 180 p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 180 PSDESLNTIFSSILQS 195 (272)
T ss_dssp -TCCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhh
Confidence 9999998888777653
No 251
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.38 E-value=2.6e-07 Score=98.45 Aligned_cols=215 Identities=23% Similarity=0.254 Sum_probs=112.2
Q ss_pred ccCCCHHHHHHHHHHHHHhcCchhhhh--cCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhh--------
Q 007190 170 DVKGCDDAKQELVEVVEYLKNPSKFTR--LGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE-------- 239 (613)
Q Consensus 170 dV~G~~e~k~~L~eiv~~l~~p~~~~~--lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~-------- 239 (613)
+|.|.+.+|..+.=.+ +....+... ...+-.-++||+|.||||||.|.+.++.-+.. -+++++....
T Consensus 25 ~i~g~~~iK~aill~L--~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr-~v~~~g~~~s~~gLta~~ 101 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQL--FGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPR-SVYTSGKGSSAAGLTASV 101 (331)
T ss_dssp TTTT-HHHHHHHCCCC--TT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SS-EEEEECCGSTCCCCCEEE
T ss_pred cCcCcHHHHHHHHHHH--HhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCc-eEEECCCCcccCCcccee
Confidence 4789888876652111 111111000 01123357999999999999999988654433 2333332210
Q ss_pred --hhhhhhhHHHH-HHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccc-----------cCCceE
Q 007190 240 --EMFVGVGARRV-RSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE-----------QNEGII 305 (613)
Q Consensus 240 --~~~~g~~~~~v-r~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~-----------~~~~Vi 305 (613)
+...+. -.+ ...+-.|.. .|++|||+|.+- ......|+..|+.-. -+.+.-
T Consensus 102 ~~d~~~~~--~~leaGalvlad~---GiccIDe~dk~~----------~~~~~~l~eaMEqq~isi~kagi~~~l~ar~s 166 (331)
T PF00493_consen 102 SRDPVTGE--WVLEAGALVLADG---GICCIDEFDKMK----------EDDRDALHEAMEQQTISIAKAGIVTTLNARCS 166 (331)
T ss_dssp CCCGGTSS--ECEEE-HHHHCTT---SEEEECTTTT------------CHHHHHHHHHHHCSCEEECTSSSEEEEE---E
T ss_pred ccccccce--eEEeCCchhcccC---ceeeeccccccc----------chHHHHHHHHHHcCeeccchhhhcccccchhh
Confidence 000000 000 012333333 499999999982 234556666776421 134578
Q ss_pred EEeecCCCC-------------CCChhhcCCCccceEEEc-cCCCHhhHHHHHHHHhccCCCC---------------C-
Q 007190 306 LMAATNLPD-------------ILDPALTRPGRFDRHIVV-PNPDVRGRQEILELYLQDKPLA---------------D- 355 (613)
Q Consensus 306 VIaaTN~p~-------------~Ld~aLlRpgRFd~~I~v-~~Pd~~~R~~IL~~~l~~~~l~---------------~- 355 (613)
|+|++|... .+++.|++ |||..+.+ +.|+.+.-..+.++.++..... +
T Consensus 167 vlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~ 244 (331)
T PF00493_consen 167 VLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISE 244 (331)
T ss_dssp EEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-H
T ss_pred hHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEeccccccccccccccccCCccCH
Confidence 899999664 47788888 99998765 6777665555555444322100 0
Q ss_pred -------------------hhcHHHHH------h-------cCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 007190 356 -------------------DVDVKAIA------R-------GTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKD 403 (613)
Q Consensus 356 -------------------d~dl~~la------~-------~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A~~ 403 (613)
+.....|. + .....|.+.|+.+++-|...|..+-++.|+.+|+..|++
T Consensus 245 ~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~Ai~ 324 (331)
T PF00493_consen 245 DLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEAIR 324 (331)
T ss_dssp CCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHHHH
Confidence 00011111 0 112256678889999998898888899999999999986
Q ss_pred H
Q 007190 404 R 404 (613)
Q Consensus 404 ~ 404 (613)
-
T Consensus 325 L 325 (331)
T PF00493_consen 325 L 325 (331)
T ss_dssp H
T ss_pred H
Confidence 4
No 252
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.38 E-value=1.3e-06 Score=96.86 Aligned_cols=221 Identities=19% Similarity=0.225 Sum_probs=124.6
Q ss_pred CcccCCCHHHHHHHHHHHHHhcCchhhhh--cCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhhhhhh
Q 007190 168 FKDVKGCDDAKQELVEVVEYLKNPSKFTR--LGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGV 245 (613)
Q Consensus 168 f~dV~G~~e~k~~L~eiv~~l~~p~~~~~--lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~~~g~ 245 (613)
|-.|.|++.+|.-+.-.+ +---.++.. ...+-.-+|+++|.|||||+-+.+++++-+...++ +++..-. -.|.
T Consensus 344 ~PsIyGhe~VK~GilL~L--fGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vY-tsGkaSS--aAGL 418 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSL--FGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVY-TSGKASS--AAGL 418 (764)
T ss_pred CccccchHHHHhhHHHHH--hCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceE-ecCcccc--cccc
Confidence 777899999987764322 211112211 11223357999999999999999999987655433 3322100 0111
Q ss_pred hHHHHHH--HHH---HHH---cCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccc-----------cCCceEE
Q 007190 246 GARRVRS--LFQ---AAK---KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE-----------QNEGIIL 306 (613)
Q Consensus 246 ~~~~vr~--lf~---~A~---~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~-----------~~~~ViV 306 (613)
++.-+++ -++ .|- -....|-+|||+|.+..+ -...++..|+... -+.+--|
T Consensus 419 TaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~----------dqvAihEAMEQQtISIaKAGv~aTLnARtSI 488 (764)
T KOG0480|consen 419 TAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVK----------DQVAIHEAMEQQTISIAKAGVVATLNARTSI 488 (764)
T ss_pred eEEEEecCCCCceeeecCcEEEccCceEEechhcccChH----------hHHHHHHHHHhheehheecceEEeecchhhh
Confidence 1111110 000 000 011348899999999332 1224455555321 1223457
Q ss_pred EeecCCCC-------------CCChhhcCCCccce-EEEccCCCHhhHHHHHHHHhccCCCCC-----------------
Q 007190 307 MAATNLPD-------------ILDPALTRPGRFDR-HIVVPNPDVRGRQEILELYLQDKPLAD----------------- 355 (613)
Q Consensus 307 IaaTN~p~-------------~Ld~aLlRpgRFd~-~I~v~~Pd~~~R~~IL~~~l~~~~l~~----------------- 355 (613)
|||+|+.. .+++++++ |||. .|-++.|++..-..|-++.+......+
T Consensus 489 lAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrkY 566 (764)
T KOG0480|consen 489 LAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRKY 566 (764)
T ss_pred hhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHHHH
Confidence 88888652 46788998 9998 456688887766665555543211100
Q ss_pred ------------hhc-------HHHH--------HhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 007190 356 ------------DVD-------VKAI--------ARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRI 405 (613)
Q Consensus 356 ------------d~d-------l~~l--------a~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A~~~v 405 (613)
... +..+ .+.+.+.|.++|+.+++-+-.+|..+-.+.+|.+|+++|.+-.
T Consensus 567 i~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~eLl 643 (764)
T KOG0480|consen 567 IRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVELL 643 (764)
T ss_pred HHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHH
Confidence 000 0000 0112256778888888888877777778888888888887643
No 253
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.35 E-value=1.2e-06 Score=81.81 Aligned_cols=72 Identities=26% Similarity=0.287 Sum_probs=48.0
Q ss_pred EEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhhhh----------------------hh--hHHHHHHHHHHH
Q 007190 205 ILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV----------------------GV--GARRVRSLFQAA 257 (613)
Q Consensus 205 vLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~~~----------------------g~--~~~~vr~lf~~A 257 (613)
++++||||+|||++++.++..+ +.++++++......... .. .....+..+..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 56777776543321100 00 011112234556
Q ss_pred HcCCCeEEEEcCCCccccC
Q 007190 258 KKKAPCIIFIDEIDAVGST 276 (613)
Q Consensus 258 ~~~~P~ILfIDEiD~l~~~ 276 (613)
....|.+|+|||+..+...
T Consensus 82 ~~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 82 ERGGDDLIILDELTRLVRA 100 (165)
T ss_pred hCCCCEEEEEEcHHHHHHH
Confidence 6678899999999988543
No 254
>PF05729 NACHT: NACHT domain
Probab=98.34 E-value=4.3e-06 Score=78.52 Aligned_cols=141 Identities=16% Similarity=0.271 Sum_probs=73.7
Q ss_pred eEEEEccCCChHHHHHHHHHHhcC--------CC-eeEeecchhhhh--------h----hhhhHHHHHH-HHHHHHcCC
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAG--------VP-FFYRAGSEFEEM--------F----VGVGARRVRS-LFQAAKKKA 261 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~--------~p-fi~is~s~~~~~--------~----~g~~~~~vr~-lf~~A~~~~ 261 (613)
-++|+|+||+|||++++.++..+. .+ +++.++.+.... + .......... ....+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 489999999999999999987551 12 223333332211 0 0011111222 222334556
Q ss_pred CeEEEEcCCCccccCCcc-CCcccHHHHHHHHHHhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhH
Q 007190 262 PCIIFIDEIDAVGSTRKQ-WEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGR 340 (613)
Q Consensus 262 P~ILfIDEiD~l~~~r~~-~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R 340 (613)
+.+|+||.+|.+...... ........+.+++.. ...++..++|.+.+.....+...+.. ...+.++..+.++.
T Consensus 82 ~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~liit~r~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQ--ALPPGVKLIITSRPRAFPDLRRRLKQ----AQILELEPFSEEDI 155 (166)
T ss_pred ceEEEEechHhcccchhhhHHHHHHHHHHHHhhh--ccCCCCeEEEEEcCChHHHHHHhcCC----CcEEEECCCCHHHH
Confidence 789999999999653221 000112223333321 01223333333322221122222222 15788999999999
Q ss_pred HHHHHHHhcc
Q 007190 341 QEILELYLQD 350 (613)
Q Consensus 341 ~~IL~~~l~~ 350 (613)
.++++.+++.
T Consensus 156 ~~~~~~~f~~ 165 (166)
T PF05729_consen 156 KQYLRKYFSN 165 (166)
T ss_pred HHHHHHHhhc
Confidence 9999998764
No 255
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.33 E-value=3.8e-06 Score=90.43 Aligned_cols=142 Identities=20% Similarity=0.246 Sum_probs=82.4
Q ss_pred CCCCceEEEEccCCChHHHHHHHHHHhcCCC-eeEeecchhhhhhhhh------hHHHHHHHHHHHHcCCCeEEEEcCCC
Q 007190 199 GKLPKGILLTGAPGTGKTLLAKAIAGEAGVP-FFYRAGSEFEEMFVGV------GARRVRSLFQAAKKKAPCIIFIDEID 271 (613)
Q Consensus 199 ~~~p~gvLL~GPpGTGKT~LAralA~e~~~p-fi~is~s~~~~~~~g~------~~~~vr~lf~~A~~~~P~ILfIDEiD 271 (613)
...|+|++||||+|+|||+|.-.+...+..+ =..+.-.+|....... ...-+..+-+...+. ..+|++||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~-~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKE-SRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhc-CCEEEEeeee
Confidence 4578999999999999999999998877541 1111222232211000 001122222222222 2499999997
Q ss_pred ccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccC
Q 007190 272 AVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK 351 (613)
Q Consensus 272 ~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~ 351 (613)
.- +-.+...+..|+..+- ..++++|+|+|++ |..|.. +.+.+....| -.++|+.++.-.
T Consensus 138 V~-------DiaDAmil~rLf~~l~----~~gvvlVaTSN~~---P~~Ly~-~gl~r~~Flp------~I~~l~~~~~vv 196 (362)
T PF03969_consen 138 VT-------DIADAMILKRLFEALF----KRGVVLVATSNRP---PEDLYK-NGLQRERFLP------FIDLLKRRCDVV 196 (362)
T ss_pred cc-------chhHHHHHHHHHHHHH----HCCCEEEecCCCC---hHHHcC-CcccHHHHHH------HHHHHHhceEEE
Confidence 54 2234566777776664 4688999999975 222222 2333322222 245777787777
Q ss_pred CCCChhcHHHH
Q 007190 352 PLADDVDVKAI 362 (613)
Q Consensus 352 ~l~~d~dl~~l 362 (613)
.++.+.|+...
T Consensus 197 ~ld~~~DyR~~ 207 (362)
T PF03969_consen 197 ELDGGVDYRRR 207 (362)
T ss_pred EecCCCchhhh
Confidence 77777776654
No 256
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.22 E-value=1.7e-05 Score=81.03 Aligned_cols=121 Identities=14% Similarity=0.088 Sum_probs=82.7
Q ss_pred CCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeec--------------chhhhhhh---hhhHHHHHHHHHHHH----
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAG--------------SEFEEMFV---GVGARRVRSLFQAAK---- 258 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~--------------s~~~~~~~---g~~~~~vr~lf~~A~---- 258 (613)
.+|...||+||+|+||..+|.++|...-+.=-.-.| .|+.-.+. ..+...+|++-+...
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 467899999999999999999999866321000001 11110000 112344555444332
Q ss_pred c-CCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCC
Q 007190 259 K-KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNP 335 (613)
Q Consensus 259 ~-~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~P 335 (613)
. ....|++||++|.+ .....|.||+.++ ++..++++|..|+.++.+.|.+++ |+. .+.++.+
T Consensus 85 e~~~~KV~II~~ae~m----------~~~AaNaLLK~LE--EPp~~t~fiLit~~~~~lLpTI~S--RCq-~~~~~~~ 147 (261)
T PRK05818 85 ESNGKKIYIIYGIEKL----------NKQSANSLLKLIE--EPPKNTYGIFTTRNENNILNTILS--RCV-QYVVLSK 147 (261)
T ss_pred hcCCCEEEEeccHhhh----------CHHHHHHHHHhhc--CCCCCeEEEEEECChHhCchHhhh--hee-eeecCCh
Confidence 1 23469999999999 4678899999999 467778888899999999999998 874 4666666
No 257
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.21 E-value=8.1e-06 Score=91.44 Aligned_cols=125 Identities=30% Similarity=0.403 Sum_probs=69.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhhhhhhhHH-----HHHHHHHHH---HcCCCeEEEEcCCCccc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGAR-----RVRSLFQAA---KKKAPCIIFIDEIDAVG 274 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~~~g~~~~-----~vr~lf~~A---~~~~P~ILfIDEiD~l~ 274 (613)
-+|||+|.||||||.+.+.+++-+..-. +.|+-. +.-+|..+- ..+++.-+. -.....|-+|||+|.+.
T Consensus 463 INILL~GDPGtsKSqlLqyv~~l~pRg~-yTSGkG--sSavGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~ 539 (804)
T KOG0478|consen 463 INILLVGDPGTSKSQLLQYCHRLLPRGV-YTSGKG--SSAVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMS 539 (804)
T ss_pred ceEEEecCCCcCHHHHHHHHHHhCCcce-eecCCc--cchhcceeeEEecCccceeeeecCcEEEcCCceEEchhhhhhh
Confidence 5799999999999999999998764432 223211 001111110 011111110 00123488999999992
Q ss_pred cCCccCCcccHHHHHHHHHHh------hcc--ccCCceEEEeecCCCC-------------CCChhhcCCCccceEE-Ec
Q 007190 275 STRKQWEGHTKKTLHQLLVEM------DGF--EQNEGIILMAATNLPD-------------ILDPALTRPGRFDRHI-VV 332 (613)
Q Consensus 275 ~~r~~~~~~~~~~l~~LL~~l------dg~--~~~~~ViVIaaTN~p~-------------~Ld~aLlRpgRFd~~I-~v 332 (613)
. ..+.+|.+.+.+- -|. .-+.+.-|+|++|... .|+|.|++ |||.++ -+
T Consensus 540 d-------StrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIylll 610 (804)
T KOG0478|consen 540 D-------STRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLL 610 (804)
T ss_pred H-------HHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhh--hhcEEEEEe
Confidence 2 1233333333220 011 1134456888998432 47899999 999855 56
Q ss_pred cCCCHhh
Q 007190 333 PNPDVRG 339 (613)
Q Consensus 333 ~~Pd~~~ 339 (613)
+.||...
T Consensus 611 D~~DE~~ 617 (804)
T KOG0478|consen 611 DKPDERS 617 (804)
T ss_pred cCcchhH
Confidence 7888763
No 258
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.20 E-value=2.1e-05 Score=82.60 Aligned_cols=126 Identities=14% Similarity=0.151 Sum_probs=89.9
Q ss_pred CCCCceEEEEccCCChHHHHHHHHHHhcCC-----------C--eeEee--cchhhhhhhhhhHHHHHHHHHHHHc----
Q 007190 199 GKLPKGILLTGAPGTGKTLLAKAIAGEAGV-----------P--FFYRA--GSEFEEMFVGVGARRVRSLFQAAKK---- 259 (613)
Q Consensus 199 ~~~p~gvLL~GPpGTGKT~LAralA~e~~~-----------p--fi~is--~s~~~~~~~g~~~~~vr~lf~~A~~---- 259 (613)
++.++..||+|+.|.||+.+|+.+++.+.+ | ++.++ +.. .+...++++.+....
T Consensus 15 ~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~-------i~vd~Ir~l~~~~~~~~~~ 87 (299)
T PRK07132 15 NKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKD-------LSKSEFLSAINKLYFSSFV 87 (299)
T ss_pred CCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCc-------CCHHHHHHHHHHhccCCcc
Confidence 466778999999999999999999998632 2 22222 111 112345555444421
Q ss_pred -CCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHh
Q 007190 260 -KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVR 338 (613)
Q Consensus 260 -~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~ 338 (613)
+...|++||++|.+ .....|.||..++. +...+++|..|+.++.|-|.+++ |+ ..+.+++|+.+
T Consensus 88 ~~~~KvvII~~~e~m----------~~~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~~l~~~ 152 (299)
T PRK07132 88 QSQKKILIIKNIEKT----------SNSLLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVS--RC-QVFNVKEPDQQ 152 (299)
T ss_pred cCCceEEEEeccccc----------CHHHHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHh--Ce-EEEECCCCCHH
Confidence 24569999999888 45678899999995 55566666677788899989887 77 67899999888
Q ss_pred hHHHHHHH
Q 007190 339 GRQEILEL 346 (613)
Q Consensus 339 ~R~~IL~~ 346 (613)
+....|..
T Consensus 153 ~l~~~l~~ 160 (299)
T PRK07132 153 KILAKLLS 160 (299)
T ss_pred HHHHHHHH
Confidence 77766654
No 259
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.20 E-value=1.4e-05 Score=80.90 Aligned_cols=125 Identities=22% Similarity=0.236 Sum_probs=72.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG 282 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~ 282 (613)
.+..++||+|||||.++|.+|..+|.+++..+|++-.+ ...+.++|.-+... .+-+++||++.+-.
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl~~------- 98 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRLSE------- 98 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCSSH-------
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-CchhhhhhhhhhhH-------
Confidence 46789999999999999999999999999999988554 34566666554443 36999999999821
Q ss_pred ccHHHHHHHHHHh----hcc-----------ccCCceEEEeecCCC----CCCChhhcCCCccceEEEccCCCHhhHHHH
Q 007190 283 HTKKTLHQLLVEM----DGF-----------EQNEGIILMAATNLP----DILDPALTRPGRFDRHIVVPNPDVRGRQEI 343 (613)
Q Consensus 283 ~~~~~l~~LL~~l----dg~-----------~~~~~ViVIaaTN~p----~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~I 343 (613)
..-.++.+.+..+ ..- .-+..+-++.|.|.. ..||+.|+. -| |.+.+..||.....++
T Consensus 99 ~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~~PD~~~I~ei 175 (231)
T PF12774_consen 99 EVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMMVPDLSLIAEI 175 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--S--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEeCCCHHHHHHH
Confidence 1222222222221 110 011223344455532 478888886 45 8999999997665554
Q ss_pred H
Q 007190 344 L 344 (613)
Q Consensus 344 L 344 (613)
+
T Consensus 176 ~ 176 (231)
T PF12774_consen 176 L 176 (231)
T ss_dssp H
T ss_pred H
Confidence 4
No 260
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.18 E-value=1.9e-05 Score=97.40 Aligned_cols=178 Identities=17% Similarity=0.211 Sum_probs=101.3
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCe---eEeecc---h
Q 007190 164 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPF---FYRAGS---E 237 (613)
Q Consensus 164 ~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pf---i~is~s---~ 237 (613)
+...|++++|.++..+++..++.. .....+-+-|+||+|+||||||+++++....+| +.++.. .
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~l----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~ 248 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLHL----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISK 248 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHcc----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecccccc
Confidence 345689999999988888776631 223346789999999999999999988765433 111110 0
Q ss_pred hhhhh-----------hhhhHHHHHH-------------HHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHH
Q 007190 238 FEEMF-----------VGVGARRVRS-------------LFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLV 293 (613)
Q Consensus 238 ~~~~~-----------~g~~~~~vr~-------------lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~ 293 (613)
....+ .......+.+ ..+..-..++.+|+||++|.. ..+..+..
T Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~------------~~l~~L~~ 316 (1153)
T PLN03210 249 SMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ------------DVLDALAG 316 (1153)
T ss_pred chhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH------------HHHHHHHh
Confidence 00000 0000000111 111222345679999998743 23334433
Q ss_pred HhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhc----HHHHHhcCCCC
Q 007190 294 EMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVD----VKAIARGTPGF 369 (613)
Q Consensus 294 ~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~d----l~~la~~t~G~ 369 (613)
..+.+.. +..||.||... .+.+....++.+.++.|+.++..+++..++-+....+ .+ ...+++.+.|.
T Consensus 317 ~~~~~~~--GsrIIiTTrd~-----~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~-~~~~~l~~~iv~~c~GL 388 (1153)
T PLN03210 317 QTQWFGS--GSRIIVITKDK-----HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPP-DGFMELASEVALRAGNL 388 (1153)
T ss_pred hCccCCC--CcEEEEEeCcH-----HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHhCCC
Confidence 3332322 33344466643 3333234678899999999999999998875433222 22 23466667665
Q ss_pred CH
Q 007190 370 NG 371 (613)
Q Consensus 370 sg 371 (613)
.-
T Consensus 389 PL 390 (1153)
T PLN03210 389 PL 390 (1153)
T ss_pred cH
Confidence 43
No 261
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.14 E-value=3.2e-05 Score=79.93 Aligned_cols=172 Identities=19% Similarity=0.230 Sum_probs=90.1
Q ss_pred HHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHh--cCCCe---eEeecch------hhhhh---hhh
Q 007190 180 ELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGE--AGVPF---FYRAGSE------FEEMF---VGV 245 (613)
Q Consensus 180 ~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e--~~~pf---i~is~s~------~~~~~---~g~ 245 (613)
++.++.+.|.... ...+-|.|+|++|+|||+||+.+++. ....| +.++.+. +.... .+.
T Consensus 4 ~~~~l~~~L~~~~-------~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 4 EIEKLKDWLLDNS-------NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp HHHHHHHHHHTTT-------TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhCCC-------CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 4555555554421 34567999999999999999999977 33322 2232221 11110 010
Q ss_pred ----------hHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCCC
Q 007190 246 ----------GARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 315 (613)
Q Consensus 246 ----------~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~ 315 (613)
.....+.+.+ .-...+++|++|+++.. ..+..+...+..+ ..+..||.||.....
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~-~L~~~~~LlVlDdv~~~------------~~~~~l~~~~~~~--~~~~kilvTTR~~~v 141 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRE-LLKDKRCLLVLDDVWDE------------EDLEELREPLPSF--SSGSKILVTTRDRSV 141 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHH-HHCCTSEEEEEEEE-SH------------HHH-------HCH--HSS-EEEEEESCGGG
T ss_pred cccccccccccccccccchh-hhccccceeeeeeeccc------------ccccccccccccc--ccccccccccccccc
Confidence 1122333333 33444899999998765 1222333222222 223455556664322
Q ss_pred CChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCC----CCChhcHHHHHhcCCCCCHHHHHHHH
Q 007190 316 LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKP----LADDVDVKAIARGTPGFNGADLANLV 378 (613)
Q Consensus 316 Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~----l~~d~dl~~la~~t~G~sgadL~~lv 378 (613)
. .... .-...+.++..+.++-.++|+.+..... ...+.....|++.+.| .|-.|.-+.
T Consensus 142 ~-~~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~a 203 (287)
T PF00931_consen 142 A-GSLG---GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGG-LPLALKLIA 203 (287)
T ss_dssp G-TTHH---SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHHH
T ss_pred c-cccc---cccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence 1 1111 1157899999999999999999875543 1112235778888876 455555443
No 262
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.14 E-value=1.1e-05 Score=79.84 Aligned_cols=111 Identities=14% Similarity=0.217 Sum_probs=64.5
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhh-hhhhh----------------------hhHHHHHHHH
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFE-EMFVG----------------------VGARRVRSLF 254 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~-~~~~g----------------------~~~~~vr~lf 254 (613)
...-++++||||+|||+++..++.+. +.+.++++..++. +.+.. .....+..+.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~ 90 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQKTS 90 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHHHHH
Confidence 33558899999999999999988643 6678888876521 11110 0011234444
Q ss_pred HHHHcCCCeEEEEcCCCccccCCccCCc-ccHHHHHHHHHHhhccccCCceEEEeecC
Q 007190 255 QAAKKKAPCIIFIDEIDAVGSTRKQWEG-HTKKTLHQLLVEMDGFEQNEGIILMAATN 311 (613)
Q Consensus 255 ~~A~~~~P~ILfIDEiD~l~~~r~~~~~-~~~~~l~~LL~~ldg~~~~~~ViVIaaTN 311 (613)
..+.+..|++|+||-+.++......... ...+.+..++..|..+....++.++.+..
T Consensus 91 ~~~~~~~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~ 148 (209)
T TIGR02237 91 KFIDRDSASLVVVDSFTALYRLELSDDRISRNRELARQLTLLLSLARKKNLAVVITNQ 148 (209)
T ss_pred HHHhhcCccEEEEeCcHHHhHHHhCCccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 4455567899999999988532111111 11223344444444444455666666544
No 263
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=98.12 E-value=2.9e-05 Score=82.68 Aligned_cols=157 Identities=21% Similarity=0.266 Sum_probs=91.8
Q ss_pred CCCCceEEEEccCCChHHHHHHHHHHhcCCCee---EeecchhhhhhhhhhHHHHHHHHHHH------------------
Q 007190 199 GKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFF---YRAGSEFEEMFVGVGARRVRSLFQAA------------------ 257 (613)
Q Consensus 199 ~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi---~is~s~~~~~~~g~~~~~vr~lf~~A------------------ 257 (613)
..+|+|++|||.-|||||+|.-.+-..+.. .. .+...+| +-...+++.++-.+-
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~~~-i~rkqRvHFh~f----M~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~ 185 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDALPP-IWRKQRVHFHGF----MLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPV 185 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcCCc-hhhhhhhhHHHH----HHHHHHHHHHHHHhccccCccccccccCCccHH
Confidence 457999999999999999999988754321 00 0011111 111111111111110
Q ss_pred ----HcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCC-CCCChhhcCCCccceEEEc
Q 007190 258 ----KKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP-DILDPALTRPGRFDRHIVV 332 (613)
Q Consensus 258 ----~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p-~~Ld~aLlRpgRFd~~I~v 332 (613)
-...-++|++||+..- +-.+..+|++|...+= +.||++++|+|++ +.|- .. -+.+...+
T Consensus 186 vA~eIa~ea~lLCFDEfQVT-------DVADAmiL~rLf~~Lf----~~GvVlvATSNR~P~dLY----kn-GlQR~~F~ 249 (467)
T KOG2383|consen 186 VADEIAEEAILLCFDEFQVT-------DVADAMILKRLFEHLF----KNGVVLVATSNRAPEDLY----KN-GLQRENFI 249 (467)
T ss_pred HHHHHhhhceeeeechhhhh-------hHHHHHHHHHHHHHHH----hCCeEEEEeCCCChHHHh----hc-chhhhhhh
Confidence 0111369999999754 1223456777776554 3589999999975 3332 21 23344444
Q ss_pred cCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCC---CCCHH-HHHHHHHHHH
Q 007190 333 PNPDVRGRQEILELYLQDKPLADDVDVKAIARGTP---GFNGA-DLANLVNIAA 382 (613)
Q Consensus 333 ~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~---G~sga-dL~~lv~~Aa 382 (613)
| -..+|+.+++-..+.+.+|+...++... .|.+. |+..++++-.
T Consensus 250 P------fI~~L~~rc~vi~ldS~vDYR~~~~~~~~~~yf~~~~d~~~~l~~~f 297 (467)
T KOG2383|consen 250 P------FIALLEERCKVIQLDSGVDYRRKAKSAGENYYFISETDVETVLKEWF 297 (467)
T ss_pred h------HHHHHHHhheEEecCCccchhhccCCCCceeEecChhhHHHHHHHHH
Confidence 4 3568899998888889999984443222 13333 7777777655
No 264
>COG1485 Predicted ATPase [General function prediction only]
Probab=98.04 E-value=2.6e-05 Score=82.13 Aligned_cols=171 Identities=19% Similarity=0.234 Sum_probs=94.8
Q ss_pred CCcccCCCHHHHHHHHHHHHHhcCchh----hhhcCC---CCCceEEEEccCCChHHHHHHHHHHhcCCCe-eEeecchh
Q 007190 167 TFKDVKGCDDAKQELVEVVEYLKNPSK----FTRLGG---KLPKGILLTGAPGTGKTLLAKAIAGEAGVPF-FYRAGSEF 238 (613)
Q Consensus 167 ~f~dV~G~~e~k~~L~eiv~~l~~p~~----~~~lg~---~~p~gvLL~GPpGTGKT~LAralA~e~~~pf-i~is~s~~ 238 (613)
+|.+=.-+..+.+.|.++.+.+..+.. +..+.+ .+|+|++||||-|.|||+|.-.+-..+..+- ..+.-..|
T Consensus 23 ~~~~D~aQ~~a~~~Ldrl~~~~~~~~~~~~~l~~lf~r~~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~F 102 (367)
T COG1485 23 TFQPDPAQPAAAAALDRLYDELVAPRSARKALGWLFGRDHGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRF 102 (367)
T ss_pred CCCCChHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHH
Confidence 344323344555666666654333221 122333 3789999999999999999999988765432 12222222
Q ss_pred hhh-------hhhhhHHHHHHHH-HHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeec
Q 007190 239 EEM-------FVGVGARRVRSLF-QAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAAT 310 (613)
Q Consensus 239 ~~~-------~~g~~~~~vr~lf-~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaT 310 (613)
... ..|... -+..+- +.+++ -.+|+|||+..= +-.+...+..|+.+|= ..+|++++|+
T Consensus 103 M~~vH~~l~~l~g~~d-pl~~iA~~~~~~--~~vLCfDEF~Vt-------DI~DAMiL~rL~~~Lf----~~GV~lvaTS 168 (367)
T COG1485 103 MARVHQRLHTLQGQTD-PLPPIADELAAE--TRVLCFDEFEVT-------DIADAMILGRLLEALF----ARGVVLVATS 168 (367)
T ss_pred HHHHHHHHHHHcCCCC-ccHHHHHHHHhc--CCEEEeeeeeec-------ChHHHHHHHHHHHHHH----HCCcEEEEeC
Confidence 111 111110 001111 11111 249999998642 2234567778887765 3589999999
Q ss_pred CCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHH
Q 007190 311 NLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKA 361 (613)
Q Consensus 311 N~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~ 361 (613)
|.+ |..|-+ ++|.+.-.+| -.++++.++.-..++...|+..
T Consensus 169 N~~---P~~LY~-dGlqR~~FLP------~I~li~~~~~v~~vD~~~DYR~ 209 (367)
T COG1485 169 NTA---PDNLYK-DGLQRERFLP------AIDLIKSHFEVVNVDGPVDYRL 209 (367)
T ss_pred CCC---hHHhcc-cchhHHhhHH------HHHHHHHheEEEEecCCccccc
Confidence 964 222222 3444433344 3468888888777777767543
No 265
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.02 E-value=3.8e-05 Score=74.17 Aligned_cols=71 Identities=28% Similarity=0.358 Sum_probs=46.1
Q ss_pred EEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhhhh------hh-----------------------hH-----
Q 007190 205 ILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV------GV-----------------------GA----- 247 (613)
Q Consensus 205 vLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~~~------g~-----------------------~~----- 247 (613)
+|++||||||||+++..++.+. |.++++++..+-.+.+. |. +.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 7899999999999999886643 67777776533221100 00 00
Q ss_pred HHHHHHHHHHHcCCCeEEEEcCCCcccc
Q 007190 248 RRVRSLFQAAKKKAPCIIFIDEIDAVGS 275 (613)
Q Consensus 248 ~~vr~lf~~A~~~~P~ILfIDEiD~l~~ 275 (613)
..+..+...+....|.+|+||++..+..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 0123344445566799999999998754
No 266
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.98 E-value=3.3e-05 Score=83.99 Aligned_cols=220 Identities=22% Similarity=0.269 Sum_probs=124.7
Q ss_pred ccCCCHHHHHHHHHHHHHhcCchhhhhcCCC--CCceEEEEccCCChHHHHHHHHHHhcCCCeeEee-cchhhhhhhhhh
Q 007190 170 DVKGCDDAKQELVEVVEYLKNPSKFTRLGGK--LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRA-GSEFEEMFVGVG 246 (613)
Q Consensus 170 dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~--~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is-~s~~~~~~~g~~ 246 (613)
+|.|.+++|+.|.-++.- -+++-..-|.+ -.-+|+|.|.||+.|+-|.+.+.+-+....+..- +|+ -+|.+
T Consensus 343 EIyGheDVKKaLLLlLVG--gvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSS----GVGLT 416 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVG--GVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSS----GVGLT 416 (721)
T ss_pred hhccchHHHHHHHHHhhC--CCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCC----ccccc
Confidence 578999999998665432 11111111222 2357999999999999999999987655544321 222 23333
Q ss_pred HHHHHHHH-----------HHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHH----h--hcc--ccCCceEEE
Q 007190 247 ARRVRSLF-----------QAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVE----M--DGF--EQNEGIILM 307 (613)
Q Consensus 247 ~~~vr~lf-----------~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~----l--dg~--~~~~~ViVI 307 (613)
+.-+++-. -.|. ..|-+|||+|.+... ++..+.+.+.+ + .|. .-|.+.-|+
T Consensus 417 AAVmkDpvTgEM~LEGGALVLAD---~GICCIDEfDKM~e~-------DRtAIHEVMEQQTISIaKAGI~TtLNAR~sIL 486 (721)
T KOG0482|consen 417 AAVMKDPVTGEMVLEGGALVLAD---GGICCIDEFDKMDES-------DRTAIHEVMEQQTISIAKAGINTTLNARTSIL 486 (721)
T ss_pred hhhhcCCCCCeeEeccceEEEcc---CceEeehhhhhhhhh-------hhHHHHHHHHhhhhhhhhhccccchhhhHHhh
Confidence 33333211 0111 248899999999433 22222222211 0 011 113456778
Q ss_pred eecCCCC-------------CCChhhcCCCccceEE-EccCCCHhhHHHHHHHHh----ccCCCC---ChhcHHH-----
Q 007190 308 AATNLPD-------------ILDPALTRPGRFDRHI-VVPNPDVRGRQEILELYL----QDKPLA---DDVDVKA----- 361 (613)
Q Consensus 308 aaTN~p~-------------~Ld~aLlRpgRFd~~I-~v~~Pd~~~R~~IL~~~l----~~~~l~---~d~dl~~----- 361 (613)
||.|... .||.||++ |||... -.+.||.+.-..+-++.. ....-. ..++...
T Consensus 487 aAANPayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI 564 (721)
T KOG0482|consen 487 AAANPAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYI 564 (721)
T ss_pred hhcCccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHH
Confidence 8888542 57899999 999844 446787665555444432 111111 0111110
Q ss_pred -HHhcC-----------------------------CCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhc
Q 007190 362 -IARGT-----------------------------PGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRILM 407 (613)
Q Consensus 362 -la~~t-----------------------------~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A~~~v~~ 407 (613)
+++.. ...|++-|-.+++-+...|..+-.+.+..+|+++|++-.-+
T Consensus 565 ~~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLme~ 640 (721)
T KOG0482|consen 565 SLAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLMEM 640 (721)
T ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHh
Confidence 11110 12367778788887777777777788888888888875544
No 267
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.97 E-value=2e-05 Score=92.85 Aligned_cols=206 Identities=15% Similarity=0.191 Sum_probs=123.2
Q ss_pred CCCCCCCcccCCCHHHHHHHHHHHHHhcCch--hhhhcCCCCC-c-eEEEEccCCChHHHHHHHHHHhcCCCeeEeecch
Q 007190 162 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPS--KFTRLGGKLP-K-GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE 237 (613)
Q Consensus 162 ~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~--~~~~lg~~~p-~-gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~ 237 (613)
.+.+....++.|.......+.+..+..++++ .|...+...- + .+|++||||+|||+.+.++|.+.|..++..+.++
T Consensus 313 k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~ 392 (871)
T KOG1968|consen 313 KYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASD 392 (871)
T ss_pred ccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeecCccc
Confidence 3444455777777766555544444333321 1222111111 2 3799999999999999999999999999999987
Q ss_pred hhhhhhhh-------hHHHHHHHHHH---HHc-CCC-eEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceE
Q 007190 238 FEEMFVGV-------GARRVRSLFQA---AKK-KAP-CIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGII 305 (613)
Q Consensus 238 ~~~~~~g~-------~~~~vr~lf~~---A~~-~~P-~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~Vi 305 (613)
..+..... +...+...|.. ... ... .||++||+|.+.... ...-..+.++.. ....-
T Consensus 393 ~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~d----Rg~v~~l~~l~~-------ks~~P 461 (871)
T KOG1968|consen 393 VRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGED----RGGVSKLSSLCK-------KSSRP 461 (871)
T ss_pred cccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccchh----hhhHHHHHHHHH-------hccCC
Confidence 65443211 11223333310 000 112 399999999985410 011233344443 23345
Q ss_pred EEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 007190 306 LMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIK 384 (613)
Q Consensus 306 VIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~lv~~Aa~~ 384 (613)
+|++||........... |-..-++|+.|+.+.+..-+..++...... .+-.++.+... +++||++.++.-...
T Consensus 462 iv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~----~~~DiR~~i~~lq~~ 535 (871)
T KOG1968|consen 462 LVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKL----SGGDIRQIIMQLQFW 535 (871)
T ss_pred eEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHh----cccCHHHHHHHHhhh
Confidence 67778865544432222 334678899999999888887777654433 44457777774 477999988876655
No 268
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.96 E-value=3.6e-05 Score=85.33 Aligned_cols=77 Identities=23% Similarity=0.425 Sum_probs=55.1
Q ss_pred CCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhhhh------hh--------hHHHHHHHHHHHHcCCC
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV------GV--------GARRVRSLFQAAKKKAP 262 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~~~------g~--------~~~~vr~lf~~A~~~~P 262 (613)
.+..-++|+||||+|||+|+..++... +.++++++..+-.+... |. ....+..++...++..|
T Consensus 78 ~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~~ 157 (446)
T PRK11823 78 VPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEKP 157 (446)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhCC
Confidence 334558899999999999999998755 67888888765433221 10 11234566667777789
Q ss_pred eEEEEcCCCccccC
Q 007190 263 CIIFIDEIDAVGST 276 (613)
Q Consensus 263 ~ILfIDEiD~l~~~ 276 (613)
.+|+||++..+...
T Consensus 158 ~lVVIDSIq~l~~~ 171 (446)
T PRK11823 158 DLVVIDSIQTMYSP 171 (446)
T ss_pred CEEEEechhhhccc
Confidence 99999999988543
No 269
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.96 E-value=2.3e-05 Score=69.64 Aligned_cols=23 Identities=43% Similarity=0.660 Sum_probs=20.5
Q ss_pred EEEEccCCChHHHHHHHHHHhcC
Q 007190 205 ILLTGAPGTGKTLLAKAIAGEAG 227 (613)
Q Consensus 205 vLL~GPpGTGKT~LAralA~e~~ 227 (613)
|.|+||||+|||++|+.|+..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999987663
No 270
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.93 E-value=0.00021 Score=77.61 Aligned_cols=93 Identities=14% Similarity=0.183 Sum_probs=52.3
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc----CCCeeEeecchhhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCC
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTR 277 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~----~~pfi~is~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r 277 (613)
..++++.||||||||+++.+++... | -.++.+.+.... .. ..+... ....+|+|||+..+.-.
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L----~~---~~lg~v--~~~DlLI~DEvgylp~~- 275 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNI----ST---RQIGLV--GRWDVVAFDEVATLKFA- 275 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHH----HH---HHHhhh--ccCCEEEEEcCCCCcCC-
Confidence 3589999999999999999997762 3 222223322211 11 111111 23569999999987322
Q ss_pred ccCCcccHHHHHHHHHHhhc--c-------ccCCceEEEeecCC
Q 007190 278 KQWEGHTKKTLHQLLVEMDG--F-------EQNEGIILMAATNL 312 (613)
Q Consensus 278 ~~~~~~~~~~l~~LL~~ldg--~-------~~~~~ViVIaaTN~ 312 (613)
.....+.-|-..|+. | ..+.+++++|-+|.
T Consensus 276 -----~~~~~v~imK~yMesg~fsRG~~~~~a~as~vfvGNi~~ 314 (449)
T TIGR02688 276 -----KPKELIGILKNYMESGSFTRGDETKSSDASFVFLGNVPL 314 (449)
T ss_pred -----chHHHHHHHHHHHHhCceeccceeeeeeeEEEEEcccCC
Confidence 122333444444442 1 22345777776664
No 271
>PRK08118 topology modulation protein; Reviewed
Probab=97.91 E-value=3.7e-05 Score=74.00 Aligned_cols=101 Identities=20% Similarity=0.253 Sum_probs=63.4
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcc
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGH 283 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~ 283 (613)
-|+++||||+||||+|+.|++.++.|++.++.--+...+...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~~~-------------------------------------- 44 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGV-------------------------------------- 44 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcCC--------------------------------------
Confidence 589999999999999999999999999876532111000000
Q ss_pred cHHHHHHHHHHhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhcc
Q 007190 284 TKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQD 350 (613)
Q Consensus 284 ~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~ 350 (613)
.......++..+- ...+. |.-.|.+..++..+. ++|..|.+..|...-...+++.+++.
T Consensus 45 ~~~~~~~~~~~~~---~~~~w--VidG~~~~~~~~~l~---~~d~vi~Ld~p~~~~~~R~~~R~~~~ 103 (167)
T PRK08118 45 PKEEQITVQNELV---KEDEW--IIDGNYGGTMDIRLN---AADTIIFLDIPRTICLYRAFKRRVQY 103 (167)
T ss_pred CHHHHHHHHHHHh---cCCCE--EEeCCcchHHHHHHH---hCCEEEEEeCCHHHHHHHHHHHHHHH
Confidence 0111122222211 12233 224455555654443 58999999999888888888887753
No 272
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.90 E-value=5.5e-05 Score=81.86 Aligned_cols=77 Identities=27% Similarity=0.450 Sum_probs=53.8
Q ss_pred CCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhhhh------hh--------hHHHHHHHHHHHHcCCC
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV------GV--------GARRVRSLFQAAKKKAP 262 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~~~------g~--------~~~~vr~lf~~A~~~~P 262 (613)
.+..-++|+||||+|||+|+..+|... +.+++++++.+-.+... |. ....+..+++.+....|
T Consensus 80 ~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~ 159 (372)
T cd01121 80 VPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKP 159 (372)
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCC
Confidence 334568999999999999999998754 46788887754322211 10 11234566667777789
Q ss_pred eEEEEcCCCccccC
Q 007190 263 CIIFIDEIDAVGST 276 (613)
Q Consensus 263 ~ILfIDEiD~l~~~ 276 (613)
.+|+||+|..+...
T Consensus 160 ~lVVIDSIq~l~~~ 173 (372)
T cd01121 160 DLVIIDSIQTVYSS 173 (372)
T ss_pred cEEEEcchHHhhcc
Confidence 99999999998543
No 273
>PHA00729 NTP-binding motif containing protein
Probab=97.88 E-value=2.4e-05 Score=78.55 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=23.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAG 227 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~ 227 (613)
.+++|+|+||||||++|.+++.+++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999999875
No 274
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.77 E-value=0.0011 Score=72.46 Aligned_cols=123 Identities=17% Similarity=0.156 Sum_probs=73.9
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcc
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGH 283 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~ 283 (613)
.++++||.+||||++++.+.....-++++++..+........ ......+..+.....+.||||||+.+- .
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v~--------~ 108 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNVP--------D 108 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCch--------h
Confidence 799999999999999998888775556666665544332111 112222222222244799999999882 1
Q ss_pred cHHHHHHHHHHhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHH
Q 007190 284 TKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQE 342 (613)
Q Consensus 284 ~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~ 342 (613)
-...++.+... ... .+++.+++........+-.-+||. ..+.+.|.+..+...
T Consensus 109 W~~~lk~l~d~---~~~--~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 109 WERALKYLYDR---GNL--DVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred HHHHHHHHHcc---ccc--eEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 23444444422 111 455555444433334444556895 677777788877754
No 275
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.75 E-value=0.00011 Score=73.74 Aligned_cols=111 Identities=18% Similarity=0.266 Sum_probs=61.0
Q ss_pred CCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhh-hh---hhh-------------------hHHHHHHH
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEE-MF---VGV-------------------GARRVRSL 253 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~-~~---~g~-------------------~~~~vr~l 253 (613)
....-++++||||+|||+++..+|.+. +.++++++...+.. .+ ... ....++.+
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 100 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFEEQSEAIRKA 100 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeCCCHHHHHHHHHHH
Confidence 334568999999999999999998744 77888888763211 11 000 01112222
Q ss_pred HHHHHcCCCeEEEEcCCCccccCC--ccC-CcccHHHHHHHHHHhhccccCCceEEEeecC
Q 007190 254 FQAAKKKAPCIIFIDEIDAVGSTR--KQW-EGHTKKTLHQLLVEMDGFEQNEGIILMAATN 311 (613)
Q Consensus 254 f~~A~~~~P~ILfIDEiD~l~~~r--~~~-~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN 311 (613)
....+ ..+.+|+||-+.++.... +.. .....+.+.+++..|..+....++.++.+..
T Consensus 101 ~~~~~-~~~~lvVIDsi~al~~~~~~~~~~~~~~~~~l~~~l~~L~~~a~~~~v~vi~tnq 160 (225)
T PRK09361 101 EKLAK-ENVGLIVLDSATSLYRLELEDEEDNSKLNRELGRQLTHLLKLARKHDLAVVITNQ 160 (225)
T ss_pred HHHHH-hcccEEEEeCcHHHhHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcc
Confidence 22222 578899999999885431 001 1111233444444344333345556665433
No 276
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.75 E-value=0.00021 Score=72.17 Aligned_cols=40 Identities=30% Similarity=0.473 Sum_probs=30.5
Q ss_pred CCCCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecch
Q 007190 198 GGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSE 237 (613)
Q Consensus 198 g~~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~ 237 (613)
|...+..++++||||||||+++..++.+. +.++++++..+
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~ 63 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN 63 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 34445679999999999999999997543 66777776543
No 277
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.75 E-value=7.4e-05 Score=75.02 Aligned_cols=25 Identities=44% Similarity=0.751 Sum_probs=21.8
Q ss_pred CCCceEEEEccCCChHHHHHHHHHH
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAG 224 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~ 224 (613)
+.|..+||||+||+|||++|+.+++
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcCC
Confidence 3466799999999999999999963
No 278
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.00022 Score=83.80 Aligned_cols=162 Identities=24% Similarity=0.344 Sum_probs=107.4
Q ss_pred CCcccCCC-HHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc----------CCCeeEeec
Q 007190 167 TFKDVKGC-DDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFYRAG 235 (613)
Q Consensus 167 ~f~dV~G~-~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~----------~~pfi~is~ 235 (613)
.++-++|. ++. ++.+++-|.. +..++-+|+|.||+|||.++.-+|+.. +..++.++.
T Consensus 184 kldPvigr~dee---irRvi~iL~R---------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~ 251 (898)
T KOG1051|consen 184 KLDPVIGRHDEE---IRRVIEILSR---------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDF 251 (898)
T ss_pred CCCCccCCchHH---HHHHHHHHhc---------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEh
Confidence 36778887 444 3333433322 223578999999999999999999865 233555555
Q ss_pred chh--hhhhhhhhHHHHHHHHHHHH-cCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCC
Q 007190 236 SEF--EEMFVGVGARRVRSLFQAAK-KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNL 312 (613)
Q Consensus 236 s~~--~~~~~g~~~~~vr~lf~~A~-~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~ 312 (613)
..+ ..++.|+.+.+++.+.+.+. .....||||||++-+.+...... ..... .+|..+- .+.++-+||||..
T Consensus 252 g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~--~~d~~-nlLkp~L---~rg~l~~IGatT~ 325 (898)
T KOG1051|consen 252 GSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYG--AIDAA-NLLKPLL---ARGGLWCIGATTL 325 (898)
T ss_pred hhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcch--HHHHH-HhhHHHH---hcCCeEEEecccH
Confidence 433 33577888899999999888 45667999999999976544311 11222 2333332 2445889998863
Q ss_pred C-----CCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhc
Q 007190 313 P-----DILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQ 349 (613)
Q Consensus 313 p-----~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~ 349 (613)
- -.-||++-| ||+ .+.++.|+.+....||...-.
T Consensus 326 e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~iL~~l~~ 364 (898)
T KOG1051|consen 326 ETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSLILPGLSE 364 (898)
T ss_pred HHHHHHHhhCcchhh--Ccc-eeEeccCcccchhhhhhhhhh
Confidence 2 234899999 996 567888988776666665443
No 279
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.74 E-value=0.00025 Score=67.16 Aligned_cols=27 Identities=44% Similarity=0.661 Sum_probs=23.5
Q ss_pred CCCceEEEEccCCChHHHHHHHHHHhc
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
+.+.-+.++||||+|||+++.-++..+
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHH
Confidence 345679999999999999999999866
No 280
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.74 E-value=0.00027 Score=71.58 Aligned_cols=74 Identities=22% Similarity=0.307 Sum_probs=46.1
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhhhh------h-----------------------h--h
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV------G-----------------------V--G 246 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~~~------g-----------------------~--~ 246 (613)
...-++++||||||||+++..++... +.+.++++..+-...+. | . .
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~ 102 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNSEK 102 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChHHH
Confidence 34569999999999999986554433 56777776542211100 0 0 0
Q ss_pred HHHHHHHHHHHHcCCCeEEEEcCCCccc
Q 007190 247 ARRVRSLFQAAKKKAPCIIFIDEIDAVG 274 (613)
Q Consensus 247 ~~~vr~lf~~A~~~~P~ILfIDEiD~l~ 274 (613)
...+..+........|.+++|||+-.+.
T Consensus 103 ~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 103 RKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 2233444555555578899999998874
No 281
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.74 E-value=0.00011 Score=77.73 Aligned_cols=108 Identities=19% Similarity=0.187 Sum_probs=65.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhh-h---------------hhhhHHHHHHHHHHHHcCCCe
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM-F---------------VGVGARRVRSLFQAAKKKAPC 263 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~-~---------------~g~~~~~vr~lf~~A~~~~P~ 263 (613)
+.++++||||||||+||-.++.++ +.++++++..+.... + ....+..+..+....+...+.
T Consensus 56 ~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~~~ 135 (321)
T TIGR02012 56 RIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVD 135 (321)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccCCc
Confidence 458899999999999988876544 677778776442211 0 011122233333345567889
Q ss_pred EEEEcCCCccccCCccC---C----cccHHHHHHHHHHhhccccCCceEEEeec
Q 007190 264 IIFIDEIDAVGSTRKQW---E----GHTKKTLHQLLVEMDGFEQNEGIILMAAT 310 (613)
Q Consensus 264 ILfIDEiD~l~~~r~~~---~----~~~~~~l~~LL~~ldg~~~~~~ViVIaaT 310 (613)
+|+||-+.++.+..+-. . +...+.+.+++..|.+.-...++.+|.+.
T Consensus 136 lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tN 189 (321)
T TIGR02012 136 IIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFIN 189 (321)
T ss_pred EEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 99999999987542110 0 11223445666666665556666776653
No 282
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.71 E-value=0.00023 Score=70.91 Aligned_cols=36 Identities=33% Similarity=0.362 Sum_probs=28.8
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecc
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGS 236 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s 236 (613)
...-++++||||+|||+++..+|.+. +.++++++..
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 33458999999999999999998765 5677777654
No 283
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.71 E-value=0.00011 Score=70.04 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=30.0
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcCCCeeEe
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 233 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~i 233 (613)
+|..++|+||||||||++|+++|+.++.+|+..
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 466899999999999999999999999988854
No 284
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.70 E-value=0.0008 Score=71.56 Aligned_cols=160 Identities=19% Similarity=0.228 Sum_probs=92.5
Q ss_pred ccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhh------h-
Q 007190 170 DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM------F- 242 (613)
Q Consensus 170 dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~------~- 242 (613)
.|.+.+.+...|..++- + ..-..|..+.|||-.|||||.+.|.+-+..+.|.+.+++-+.... .
T Consensus 7 ~v~~Re~qi~~L~~Llg---~------~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL 77 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLG---N------NSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKIL 77 (438)
T ss_pred CccchHHHHHHHHHHhC---C------CCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHH
Confidence 45666766666655542 1 122578889999999999999999999999999999988664221 0
Q ss_pred --------hhh----hHHHHHH---HHHH--HHcC--CCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCc
Q 007190 243 --------VGV----GARRVRS---LFQA--AKKK--APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEG 303 (613)
Q Consensus 243 --------~g~----~~~~vr~---lf~~--A~~~--~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ 303 (613)
.|. ....+.+ .|.+ +..+ ..-.|++|.+|.+-. .....++.|++.-+-...+.-
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD-------~~a~ll~~l~~L~el~~~~~i 150 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRD-------MDAILLQCLFRLYELLNEPTI 150 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhc-------cchHHHHHHHHHHHHhCCCce
Confidence 011 1112222 2333 2222 245889999999931 233455555543332222221
Q ss_pred eEEEeecCCCCCCChhhcCCCccc-eEEEccCCCHhhHHHHHHHHh
Q 007190 304 IILMAATNLPDILDPALTRPGRFD-RHIVVPNPDVRGRQEILELYL 348 (613)
Q Consensus 304 ViVIaaTN~p~~Ld~aLlRpgRFd-~~I~v~~Pd~~~R~~IL~~~l 348 (613)
+++...+-.+.. -+.+-|-++ ..++||.|+.++...|+..--
T Consensus 151 ~iils~~~~e~~---y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 151 VIILSAPSCEKQ---YLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred EEEEeccccHHH---hhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 222222222211 112223443 378999999999999886543
No 285
>PTZ00202 tuzin; Provisional
Probab=97.70 E-value=0.0028 Score=69.20 Aligned_cols=207 Identities=17% Similarity=0.222 Sum_probs=109.3
Q ss_pred CCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhhh----
Q 007190 167 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMF---- 242 (613)
Q Consensus 167 ~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~~---- 242 (613)
.-.+.+|.++...+|..++.. .....|+-+.|+||+|||||++++.+...++.+.++.+.....+.+
T Consensus 260 ~~~~FVGReaEla~Lr~VL~~---------~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg~eElLr~LL 330 (550)
T PTZ00202 260 VIRQFVSREAEESWVRQVLRR---------LDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRGTEDTLRSVV 330 (550)
T ss_pred CccCCCCcHHHHHHHHHHHhc---------cCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCCHHHHHHHHH
Confidence 355679999988888877752 1233456789999999999999999999999887777665332211
Q ss_pred --hhh--------hHHHHHHHHHHHHc--CCCeEEE--EcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEe
Q 007190 243 --VGV--------GARRVRSLFQAAKK--KAPCIIF--IDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMA 308 (613)
Q Consensus 243 --~g~--------~~~~vr~lf~~A~~--~~P~ILf--IDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIa 308 (613)
.|. ....+.+.+..+.. +...||+ +-|=+.+ .++-|+.+..--+ ..-..+++=.
T Consensus 331 ~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l-----------~rvyne~v~la~d-rr~ch~v~ev 398 (550)
T PTZ00202 331 KALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSL-----------QRVYNEVVALACD-RRLCHVVIEV 398 (550)
T ss_pred HHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcH-----------HHHHHHHHHHHcc-chhheeeeee
Confidence 111 11223333333322 2222333 3333333 3444444332111 1111222211
Q ss_pred ecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 007190 309 ATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVD 388 (613)
Q Consensus 309 aTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~ 388 (613)
..+.|..+-..--|+|. ..+|+.+.++-.+..++.+.. .++..+.. +-|-+..|+..|+ |+..-.+-
T Consensus 399 ---pleslt~~~~~lprldf-~~vp~fsr~qaf~y~~h~~da------l~l~~fve-~vgtns~d~del~--aav~qr~v 465 (550)
T PTZ00202 399 ---PLESLTIANTLLPRLDF-YLVPNFSRSQAFAYTQHAIDA------LSLEHFVD-VVGTNSNDLDELL--AAVRQRRV 465 (550)
T ss_pred ---hHhhcchhcccCcccee-EecCCCCHHHHHHHHhhccch------HHhhHHHH-hhcCCcccHHHHH--HHHHhcCC
Confidence 22333222221127874 467888888887777766533 33333333 3466777888776 32221111
Q ss_pred CCCccCHHHHHHHHHHHhc
Q 007190 389 GGEKLTATELEFAKDRILM 407 (613)
Q Consensus 389 ~~~~It~~dl~~A~~~v~~ 407 (613)
....-|...+..|+.+.-.
T Consensus 466 s~~~yt~~kl~kamrql~a 484 (550)
T PTZ00202 466 SAAEYTNQKLLKAMRQLQA 484 (550)
T ss_pred CHHHHhhHHHHHHHHHHHH
Confidence 1122345556667666543
No 286
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.69 E-value=3.2e-05 Score=69.40 Aligned_cols=30 Identities=40% Similarity=0.760 Sum_probs=27.0
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCeeEee
Q 007190 205 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 234 (613)
Q Consensus 205 vLL~GPpGTGKT~LAralA~e~~~pfi~is 234 (613)
++|+||||+||||+|+.+|+.+|.+++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 789999999999999999999998877554
No 287
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.67 E-value=0.00089 Score=69.24 Aligned_cols=95 Identities=27% Similarity=0.334 Sum_probs=61.3
Q ss_pred ccCCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcC-----CCeeEe--ec-----c
Q 007190 170 DVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG-----VPFFYR--AG-----S 236 (613)
Q Consensus 170 dV~G~~e~k~~L~eiv~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~-----~pfi~i--s~-----s 236 (613)
.+.|+.-+++.+...+.- +.++. .+.|..+=|+|+|||||.+.++.||+..- .|++.. .- .
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 368888888888776654 44442 35576777999999999999999999652 233311 11 1
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCcc
Q 007190 237 EFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAV 273 (613)
Q Consensus 237 ~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l 273 (613)
.-++.|-.+-...+++ .++..+.+|.++||.|.+
T Consensus 157 ~~ie~Yk~eL~~~v~~---~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 157 SKIEDYKEELKNRVRG---TVQACQRSLFIFDEVDKL 190 (344)
T ss_pred HHHHHHHHHHHHHHHH---HHHhcCCceEEechhhhc
Confidence 1123333333334443 344556679999999999
No 288
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.64 E-value=3.9e-05 Score=75.42 Aligned_cols=124 Identities=19% Similarity=0.213 Sum_probs=59.0
Q ss_pred EEEEccCCChHHHHHHHH-HHh---cCCCeeEeecchhh-hh---hhhhhHH-------------HHHHHHHHHHcCCCe
Q 007190 205 ILLTGAPGTGKTLLAKAI-AGE---AGVPFFYRAGSEFE-EM---FVGVGAR-------------RVRSLFQAAKKKAPC 263 (613)
Q Consensus 205 vLL~GPpGTGKT~LAral-A~e---~~~pfi~is~s~~~-~~---~~g~~~~-------------~vr~lf~~A~~~~P~ 263 (613)
.+++|.||+|||+.|-.. ... .|.+++. +...+. +. +.+.... ..............+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 589999999999988665 433 3666655 433221 10 0000000 001111111112467
Q ss_pred EEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCC
Q 007190 264 IIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPD 336 (613)
Q Consensus 264 ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd 336 (613)
+|+|||++.+.+.+..........+ ..+.. ....++-++.+|..|..+|+.+++ +.+.++.+..++
T Consensus 82 liviDEa~~~~~~r~~~~~~~~~~~----~~l~~-hRh~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~~ 147 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKGKKVPEII----EFLAQ-HRHYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKLD 147 (193)
T ss_dssp EEEETTGGGTSB---T-T----HHH----HGGGG-CCCTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE--
T ss_pred EEEEECChhhcCCCccccccchHHH----HHHHH-hCcCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEeec
Confidence 9999999999887655221222232 22322 234567888899999999999987 777777766553
No 289
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.63 E-value=0.00022 Score=77.07 Aligned_cols=110 Identities=18% Similarity=0.320 Sum_probs=63.9
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc----C-CCeeEeecchhh-------hh---hhhhh------HHHHHHHHHHHHc
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEA----G-VPFFYRAGSEFE-------EM---FVGVG------ARRVRSLFQAAKK 259 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~----~-~pfi~is~s~~~-------~~---~~g~~------~~~vr~lf~~A~~ 259 (613)
....++|+||+|+|||+++..+|..+ | ..+..++...+. .. ..|.. ...+...+...
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l-- 213 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL-- 213 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh--
Confidence 34679999999999999999999763 3 244444444431 10 11111 11222223222
Q ss_pred CCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhcccc-CCceEEEeecCCCCCCChhhc
Q 007190 260 KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQ-NEGIILMAATNLPDILDPALT 321 (613)
Q Consensus 260 ~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~-~~~ViVIaaTN~p~~Ld~aLl 321 (613)
....+|+||...... ....+.+.+..+.+... ...++|+.+|+..+.++..+.
T Consensus 214 ~~~DlVLIDTaG~~~---------~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~ 267 (374)
T PRK14722 214 RNKHMVLIDTIGMSQ---------RDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQ 267 (374)
T ss_pred cCCCEEEEcCCCCCc---------ccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHH
Confidence 334799999985431 22345555555654433 345788888888777765544
No 290
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.62 E-value=0.0011 Score=70.05 Aligned_cols=80 Identities=23% Similarity=0.361 Sum_probs=50.5
Q ss_pred CCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCCCCChhhcCC---------C------
Q 007190 260 KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRP---------G------ 324 (613)
Q Consensus 260 ~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRp---------g------ 324 (613)
..+-||||||+|.+.+ ..+.+++..+.-+-...++++|.+.+.- .+..++... |
T Consensus 171 ~~~iViiIDdLDR~~~----------~~i~~~l~~ik~~~~~~~i~~Il~~D~~-~l~~ai~~~~~~~~~~~~~~~yLeK 239 (325)
T PF07693_consen 171 KKRIVIIIDDLDRCSP----------EEIVELLEAIKLLLDFPNIIFILAFDPE-ILEKAIEKNYGEGFDEIDGREYLEK 239 (325)
T ss_pred CceEEEEEcchhcCCc----------HHHHHHHHHHHHhcCCCCeEEEEEecHH-HHHHHHHhhcCcccccccHHHHHHh
Confidence 3467999999999832 2344555555554455778888777642 222222110 0
Q ss_pred ccceEEEccCCCHhhHHHHHHHHhcc
Q 007190 325 RFDRHIVVPNPDVRGRQEILELYLQD 350 (613)
Q Consensus 325 RFd~~I~v~~Pd~~~R~~IL~~~l~~ 350 (613)
-|+..+.+|.|+..+...++...+..
T Consensus 240 iiq~~~~lP~~~~~~~~~~~~~~~~~ 265 (325)
T PF07693_consen 240 IIQVPFSLPPPSPSDLERYLNELLES 265 (325)
T ss_pred hcCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 36668899999998888887777543
No 291
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.62 E-value=0.00028 Score=78.59 Aligned_cols=30 Identities=30% Similarity=0.418 Sum_probs=26.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCeeE
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAGVPFFY 232 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~~pfi~ 232 (613)
-++||+|.|||||+-+.|.+++-+...++.
T Consensus 483 invLL~GDPGTaKSQFLKY~eK~s~RAV~t 512 (854)
T KOG0477|consen 483 INVLLLGDPGTAKSQFLKYAEKTSPRAVFT 512 (854)
T ss_pred eeEEEecCCCccHHHHHHHHHhcCcceeEe
Confidence 469999999999999999999988776664
No 292
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.61 E-value=8.6e-05 Score=83.29 Aligned_cols=63 Identities=22% Similarity=0.388 Sum_probs=44.4
Q ss_pred CCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcC-CCeeEeec
Q 007190 167 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG-VPFFYRAG 235 (613)
Q Consensus 167 ~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~-~pfi~is~ 235 (613)
-|+|+.|++++++.+.+.+. ..- ..++. ..+.++|.||||+|||+||++||+-+. .|++.+.+
T Consensus 74 fF~d~yGlee~ieriv~~l~---~Aa--~gl~~-~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFR---HAA--QGLEE-KKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHHH---HHH--HhcCC-CCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 59999999999887766542 211 11222 224789999999999999999998652 46655544
No 293
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.59 E-value=0.0004 Score=77.21 Aligned_cols=76 Identities=24% Similarity=0.338 Sum_probs=52.4
Q ss_pred CCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhhhh------hh--------hHHHHHHHHHHHHcCCC
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV------GV--------GARRVRSLFQAAKKKAP 262 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~~~------g~--------~~~~vr~lf~~A~~~~P 262 (613)
.+..-++|+|+||+|||+|+..++... +.+++++++.+-.+... |. ....+..+...+.+..|
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~~ 171 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEENP 171 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhcCC
Confidence 333458999999999999999997754 45788888754432211 10 01234455666677789
Q ss_pred eEEEEcCCCcccc
Q 007190 263 CIIFIDEIDAVGS 275 (613)
Q Consensus 263 ~ILfIDEiD~l~~ 275 (613)
.+|+||.|..+..
T Consensus 172 ~~vVIDSIq~l~~ 184 (454)
T TIGR00416 172 QACVIDSIQTLYS 184 (454)
T ss_pred cEEEEecchhhcc
Confidence 9999999999854
No 294
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.57 E-value=0.00034 Score=74.23 Aligned_cols=108 Identities=18% Similarity=0.195 Sum_probs=63.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhh-h---------------hhhhHHHHHHHHHHHHcCCCe
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM-F---------------VGVGARRVRSLFQAAKKKAPC 263 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~-~---------------~g~~~~~vr~lf~~A~~~~P~ 263 (613)
+-+.++||||||||+||-.++.++ +.++++++...-... + ....+..+..+-..++...+.
T Consensus 56 ~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~~ 135 (325)
T cd00983 56 RIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVD 135 (325)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCCC
Confidence 457899999999999999887544 677888876432111 1 001122223333334567789
Q ss_pred EEEEcCCCccccCCccC--Cc-----ccHHHHHHHHHHhhccccCCceEEEeec
Q 007190 264 IIFIDEIDAVGSTRKQW--EG-----HTKKTLHQLLVEMDGFEQNEGIILMAAT 310 (613)
Q Consensus 264 ILfIDEiD~l~~~r~~~--~~-----~~~~~l~~LL~~ldg~~~~~~ViVIaaT 310 (613)
+|+||-+-++.+..+-. .+ ...+.+.+.+..|...-...++.+|.+.
T Consensus 136 lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tN 189 (325)
T cd00983 136 LIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFIN 189 (325)
T ss_pred EEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 99999999987532111 00 1123345556555555445566666553
No 295
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.57 E-value=0.00065 Score=73.86 Aligned_cols=131 Identities=11% Similarity=0.114 Sum_probs=73.0
Q ss_pred CCCceEEEEccCCChHHHHHHHHHHhc-------CCCeeEeecchhhh-------hhh---------hhhHHHHHHHHHH
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAGEA-------GVPFFYRAGSEFEE-------MFV---------GVGARRVRSLFQA 256 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~e~-------~~pfi~is~s~~~~-------~~~---------g~~~~~vr~lf~~ 256 (613)
..|+.++|+||+|+|||+++..+|..+ +..+..+++..+.. .|. ......+...+..
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 346789999999999999999998754 23444444333211 111 1112233333333
Q ss_pred HHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccC-CceEEEeecCCCCCCChhhcCCCc--cceEEEcc
Q 007190 257 AKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQN-EGIILMAATNLPDILDPALTRPGR--FDRHIVVP 333 (613)
Q Consensus 257 A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~-~~ViVIaaTN~p~~Ld~aLlRpgR--Fd~~I~v~ 333 (613)
. ....+|+||.+..... ....+..+...++..... ..++|+.+|.....+...+.+-.. ++ .+-+.
T Consensus 252 ~--~~~DlVLIDTaGr~~~--------~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~-~~I~T 320 (388)
T PRK12723 252 S--KDFDLVLVDTIGKSPK--------DFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYK-TVIFT 320 (388)
T ss_pred h--CCCCEEEEcCCCCCcc--------CHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCC-EEEEE
Confidence 3 3346999999976621 122355555555544333 567888888877666655443111 22 44444
Q ss_pred CCCHhhHH
Q 007190 334 NPDVRGRQ 341 (613)
Q Consensus 334 ~Pd~~~R~ 341 (613)
..|...+.
T Consensus 321 KlDet~~~ 328 (388)
T PRK12723 321 KLDETTCV 328 (388)
T ss_pred eccCCCcc
Confidence 55554443
No 296
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.56 E-value=0.00027 Score=85.34 Aligned_cols=135 Identities=26% Similarity=0.328 Sum_probs=91.3
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhh---h----hhh--hHHHH-HHHHHHHHcCCCeEEEEcCCC
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM---F----VGV--GARRV-RSLFQAAKKKAPCIIFIDEID 271 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~---~----~g~--~~~~v-r~lf~~A~~~~P~ILfIDEiD 271 (613)
.+++||-|.||+|||+|..|+|++.|-.++.++.|+-.+. | .++ ++-+. ..-|-.|.+.+ .-|++||+.
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G-~WVlLDEiN 1621 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDG-GWVLLDEIN 1621 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcC-CEEEeehhh
Confidence 3679999999999999999999999999999998764321 1 111 11111 12233333332 478899997
Q ss_pred ccccCCccCCcccHHHHHHHHHHhhc------------cccCCceEEEeecCCC------CCCChhhcCCCccceEEEcc
Q 007190 272 AVGSTRKQWEGHTKKTLHQLLVEMDG------------FEQNEGIILMAATNLP------DILDPALTRPGRFDRHIVVP 333 (613)
Q Consensus 272 ~l~~~r~~~~~~~~~~l~~LL~~ldg------------~~~~~~ViVIaaTN~p------~~Ld~aLlRpgRFd~~I~v~ 333 (613)
-. .+.++..|=.++|. |....++.|+||-|+. ..||..++. || -++.++
T Consensus 1622 La----------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RF-svV~~d 1688 (4600)
T COG5271 1622 LA----------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RF-SVVKMD 1688 (4600)
T ss_pred hh----------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hh-heEEec
Confidence 55 23344433333332 3446678899888865 368999988 99 577888
Q ss_pred CCCHhhHHHHHHHHhcc
Q 007190 334 NPDVRGRQEILELYLQD 350 (613)
Q Consensus 334 ~Pd~~~R~~IL~~~l~~ 350 (613)
..+.++...|.+....+
T Consensus 1689 ~lt~dDi~~Ia~~~yp~ 1705 (4600)
T COG5271 1689 GLTTDDITHIANKMYPQ 1705 (4600)
T ss_pred ccccchHHHHHHhhCCc
Confidence 88888888888776654
No 297
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.56 E-value=0.00031 Score=69.36 Aligned_cols=97 Identities=26% Similarity=0.326 Sum_probs=52.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhh----hhhhhHHHHHHHHHHHH---------cCCCeEEE
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM----FVGVGARRVRSLFQAAK---------KKAPCIIF 266 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~----~~g~~~~~vr~lf~~A~---------~~~P~ILf 266 (613)
+..++.||||||||++++.+...+ +..++.+....-... ..+.....+..++.... .....+|+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEE
Confidence 358899999999999999986543 566766655432111 11111122222222111 12236999
Q ss_pred EcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecC
Q 007190 267 IDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATN 311 (613)
Q Consensus 267 IDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN 311 (613)
|||+..+ ....+..++..... ...+++++|-.+
T Consensus 99 VDEasmv----------~~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 99 VDEASMV----------DSRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp ESSGGG-----------BHHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred Eeccccc----------CHHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 9999877 34556666666553 345678887655
No 298
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.54 E-value=0.0002 Score=74.30 Aligned_cols=113 Identities=21% Similarity=0.340 Sum_probs=66.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCC----------CeeEee-cchhhhhhhhh-------------hHHHHHHHHHHHH
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAGV----------PFFYRA-GSEFEEMFVGV-------------GARRVRSLFQAAK 258 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~~----------pfi~is-~s~~~~~~~g~-------------~~~~vr~lf~~A~ 258 (613)
+++++.||||+|||++.+++++.... ++..++ ..++...+.+. ...+...++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 58999999999999999999987632 222221 12221111110 1122345677777
Q ss_pred cCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCCCCChhh--------cCCCccceEE
Q 007190 259 KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPAL--------TRPGRFDRHI 330 (613)
Q Consensus 259 ~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aL--------lRpgRFd~~I 330 (613)
...|.+|++||+.. ...+..++..+. .+..+|++|..+ .+.... ...+-|++.+
T Consensus 192 ~~~P~villDE~~~------------~e~~~~l~~~~~-----~G~~vI~ttH~~-~~~~~~~r~~~~~l~~~~~~~r~i 253 (270)
T TIGR02858 192 SMSPDVIVVDEIGR------------EEDVEALLEALH-----AGVSIIATAHGR-DVEDLYKRPVFKELIENEAFERYV 253 (270)
T ss_pred hCCCCEEEEeCCCc------------HHHHHHHHHHHh-----CCCEEEEEechh-HHHHHHhChHHHHHHhcCceEEEE
Confidence 78999999999631 233445555543 356677777753 222232 2234577766
Q ss_pred Ecc
Q 007190 331 VVP 333 (613)
Q Consensus 331 ~v~ 333 (613)
.+.
T Consensus 254 ~L~ 256 (270)
T TIGR02858 254 VLS 256 (270)
T ss_pred EEe
Confidence 664
No 299
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.52 E-value=0.00065 Score=60.65 Aligned_cols=24 Identities=38% Similarity=0.450 Sum_probs=20.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
++++++||+|+|||+++-.++.+.
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 368999999999999988887765
No 300
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.52 E-value=0.00026 Score=65.18 Aligned_cols=33 Identities=39% Similarity=0.624 Sum_probs=26.8
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCeeEeecchhh
Q 007190 205 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 239 (613)
Q Consensus 205 vLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~ 239 (613)
++++||||+|||++|+.+++..+ ...++...+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~ 34 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIR 34 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHH
Confidence 78999999999999999999988 4445554443
No 301
>PRK07261 topology modulation protein; Provisional
Probab=97.51 E-value=0.00017 Score=69.60 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=28.6
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeEeec
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAG 235 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~is~ 235 (613)
-++++|+||+||||||+.++...+.|++..+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~ 33 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDT 33 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCC
Confidence 38999999999999999999999999887654
No 302
>PRK04296 thymidine kinase; Provisional
Probab=97.51 E-value=0.00051 Score=67.42 Aligned_cols=70 Identities=17% Similarity=0.131 Sum_probs=41.8
Q ss_pred eEEEEccCCChHHHHHHHHHHhc---CCCeeEeecc----hhhh---hhhhhh-----HHHHHHHHHHHH--cCCCeEEE
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGS----EFEE---MFVGVG-----ARRVRSLFQAAK--KKAPCIIF 266 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s----~~~~---~~~g~~-----~~~vr~lf~~A~--~~~P~ILf 266 (613)
-.+++||||+|||+++..++.++ +..++.+..+ .... ...|.. .....+++..++ ...+.+|+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvvi 83 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVL 83 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEE
Confidence 47899999999999998888765 5555545321 1000 011110 112334444433 34567999
Q ss_pred EcCCCcc
Q 007190 267 IDEIDAV 273 (613)
Q Consensus 267 IDEiD~l 273 (613)
|||++.+
T Consensus 84 IDEaq~l 90 (190)
T PRK04296 84 IDEAQFL 90 (190)
T ss_pred EEccccC
Confidence 9999766
No 303
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.50 E-value=0.00072 Score=70.90 Aligned_cols=158 Identities=22% Similarity=0.350 Sum_probs=93.0
Q ss_pred cCCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHH---HhcCCCeeEeecchh--hhh---
Q 007190 171 VKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIA---GEAGVPFFYRAGSEF--EEM--- 241 (613)
Q Consensus 171 V~G~~e~k~~L~eiv~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA---~e~~~pfi~is~s~~--~~~--- 241 (613)
+.|..+..+.+.+++.. .-. | -...+++.||.|+|||++....- .+.|-.|+.+....+ .++
T Consensus 26 l~g~~~~~~~l~~~lkqt~~~-------g--EsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al 96 (408)
T KOG2228|consen 26 LFGVQDEQKHLSELLKQTILH-------G--ESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIAL 96 (408)
T ss_pred eeehHHHHHHHHHHHHHHHHh-------c--CCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHH
Confidence 47777777788877764 111 1 22479999999999998765443 356666665433221 111
Q ss_pred ----------------hhhhhHHHHHHHHHHHHcC-----CCeEEEEcCCCccccCCccCCcccHHH-HHHHHHHhhccc
Q 007190 242 ----------------FVGVGARRVRSLFQAAKKK-----APCIIFIDEIDAVGSTRKQWEGHTKKT-LHQLLVEMDGFE 299 (613)
Q Consensus 242 ----------------~~g~~~~~vr~lf~~A~~~-----~P~ILfIDEiD~l~~~r~~~~~~~~~~-l~~LL~~ldg~~ 299 (613)
..|.....+..+....++. .|.|.++||||.+.+. .+++ +..|+..-. .
T Consensus 97 ~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h-------~rQtllYnlfDisq--s 167 (408)
T KOG2228|consen 97 KGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPH-------SRQTLLYNLFDISQ--S 167 (408)
T ss_pred HHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccc-------hhhHHHHHHHHHHh--h
Confidence 1122223333344433332 2345556799988542 3333 344444333 3
Q ss_pred cCCceEEEeecCCCCCC---ChhhcCCCccceE-EEccCC-CHhhHHHHHHHHh
Q 007190 300 QNEGIILMAATNLPDIL---DPALTRPGRFDRH-IVVPNP-DVRGRQEILELYL 348 (613)
Q Consensus 300 ~~~~ViVIaaTN~p~~L---d~aLlRpgRFd~~-I~v~~P-d~~~R~~IL~~~l 348 (613)
.+.+|.||+.|.+.+.+ ...+.+ ||... |++++| ...+-.++++..+
T Consensus 168 ~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 168 ARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 45678899988877654 466776 99875 666544 5677777887766
No 304
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.49 E-value=0.00057 Score=67.67 Aligned_cols=125 Identities=24% Similarity=0.442 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhhhhhhhHHHHHHHHHHH
Q 007190 178 KQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAA 257 (613)
Q Consensus 178 k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~~~g~~~~~vr~lf~~A 257 (613)
+..|..+|....+| |.+....++|.|+.|+|||++.+.|+.+ ++.-+...... . +.....
T Consensus 34 ~~wl~~~Var~~~p------g~k~d~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~~~~------k----d~~~~l 93 (198)
T PF05272_consen 34 RKWLVGAVARAYEP------GCKNDTVLVLVGKQGIGKSTFFRKLGPE----YFSDSINDFDD------K----DFLEQL 93 (198)
T ss_pred HHHHHHHHHHHhCC------CCcCceeeeEecCCcccHHHHHHHHhHH----hccCccccCCC------c----HHHHHH
Confidence 44555555544444 4556667899999999999999999665 22111111100 0 111112
Q ss_pred HcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhh-cccc---------CCceEEEeecCCCCCC-ChhhcCCCcc
Q 007190 258 KKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMD-GFEQ---------NEGIILMAATNLPDIL-DPALTRPGRF 326 (613)
Q Consensus 258 ~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ld-g~~~---------~~~ViVIaaTN~p~~L-d~aLlRpgRF 326 (613)
... -|+.|||++.+..+ ....+..++..-. .+.. ....++|||||..+-| |+.=-| ||
T Consensus 94 ~~~--~iveldEl~~~~k~-------~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnR--Rf 162 (198)
T PF05272_consen 94 QGK--WIVELDELDGLSKK-------DVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNR--RF 162 (198)
T ss_pred HHh--HheeHHHHhhcchh-------hHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCe--EE
Confidence 222 38999999998522 2345666664422 1111 2347889999998765 444445 77
Q ss_pred ceEEEccC
Q 007190 327 DRHIVVPN 334 (613)
Q Consensus 327 d~~I~v~~ 334 (613)
..|.+..
T Consensus 163 -~~v~v~~ 169 (198)
T PF05272_consen 163 -WPVEVSK 169 (198)
T ss_pred -EEEEEcC
Confidence 5666554
No 305
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.48 E-value=0.00033 Score=70.49 Aligned_cols=112 Identities=14% Similarity=0.121 Sum_probs=63.0
Q ss_pred CCCCceEEEEccCCChHHHHHHHHHHhc---------CCCeeEeecchh-h-hhhh------------------------
Q 007190 199 GKLPKGILLTGAPGTGKTLLAKAIAGEA---------GVPFFYRAGSEF-E-EMFV------------------------ 243 (613)
Q Consensus 199 ~~~p~gvLL~GPpGTGKT~LAralA~e~---------~~pfi~is~s~~-~-~~~~------------------------ 243 (613)
.+...-+.|+||||+|||+++..++... +...++++..+- . ..+.
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecCC
Confidence 3344568899999999999999998543 256777776441 1 0000
Q ss_pred -hhhHHHHHHHHHHHHcC-CCeEEEEcCCCccccCCccCC---cccHHHHHHHHHHhhccccCCceEEEeec
Q 007190 244 -GVGARRVRSLFQAAKKK-APCIIFIDEIDAVGSTRKQWE---GHTKKTLHQLLVEMDGFEQNEGIILMAAT 310 (613)
Q Consensus 244 -g~~~~~vr~lf~~A~~~-~P~ILfIDEiD~l~~~r~~~~---~~~~~~l~~LL~~ldg~~~~~~ViVIaaT 310 (613)
......+..+-...... .+++|+||-+.++....-... ....+.+.+++..|..+....++.|+.+.
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn 167 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFNVAVVITN 167 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEec
Confidence 00011122222233445 789999999998743211111 12234555666666555445556666554
No 306
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.48 E-value=0.00047 Score=68.90 Aligned_cols=111 Identities=17% Similarity=0.129 Sum_probs=63.1
Q ss_pred CCCceEEEEccCCChHHHHHHHHHHhc---C------CCeeEeecchh-hh-hhhh------------------------
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAGEA---G------VPFFYRAGSEF-EE-MFVG------------------------ 244 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~e~---~------~pfi~is~s~~-~~-~~~g------------------------ 244 (613)
....-+.|+||||+|||+++..+|... + ..+++++..+- .. .+..
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPYNG 96 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCCCH
Confidence 334568899999999999999998753 3 56677766431 11 1000
Q ss_pred -hhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCC---cccHHHHHHHHHHhhccccCCceEEEeec
Q 007190 245 -VGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE---GHTKKTLHQLLVEMDGFEQNEGIILMAAT 310 (613)
Q Consensus 245 -~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~---~~~~~~l~~LL~~ldg~~~~~~ViVIaaT 310 (613)
.....++.+........+++|+||-+..+........ ....+.+.+++..|..+....++.||.++
T Consensus 97 ~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tn 166 (226)
T cd01393 97 EQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNVAVVFTN 166 (226)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEE
Confidence 0011122222222245788999999998854321111 12234556666666665455555666554
No 307
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.47 E-value=0.00046 Score=75.42 Aligned_cols=128 Identities=25% Similarity=0.390 Sum_probs=67.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhhhhhhhHHHHHH-----HHHH--H-HcCCCeEEEEcCCCccc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRS-----LFQA--A-KKKAPCIIFIDEIDAVG 274 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~~~g~~~~~vr~-----lf~~--A-~~~~P~ILfIDEiD~l~ 274 (613)
-+|||-|.|||.|+-|.|-+-.-+.+-+ |.|+.. +.-.|.++.-+|+ ++-+ | --....|++|||+|.+-
T Consensus 365 INVLLLGDPgtAKSQlLKFvEkvsPIaV-YTSGKG--SSAAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMr 441 (729)
T KOG0481|consen 365 INVLLLGDPGTAKSQLLKFVEKVSPIAV-YTSGKG--SSAAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMR 441 (729)
T ss_pred eeEEEecCCchhHHHHHHHHHhcCceEE-EecCCC--cccccceeeEEecCCcceEEEecceEEEecCCEEEeehhhccC
Confidence 4699999999999999998866544333 222211 0011111111111 0000 0 00113499999999992
Q ss_pred cCCccCCcccHHHHHHHHH-----Hh-hcc--ccCCceEEEeecCCC-----------CCC--ChhhcCCCccceEEEcc
Q 007190 275 STRKQWEGHTKKTLHQLLV-----EM-DGF--EQNEGIILMAATNLP-----------DIL--DPALTRPGRFDRHIVVP 333 (613)
Q Consensus 275 ~~r~~~~~~~~~~l~~LL~-----~l-dg~--~~~~~ViVIaaTN~p-----------~~L--d~aLlRpgRFd~~I~v~ 333 (613)
. +++-.+.+-+. .- .|. .-|++.-|+||.|.+ +.+ -+.+++ |||..+-+.
T Consensus 442 e-------~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILS--RFDmIFIVK 512 (729)
T KOG0481|consen 442 E-------DDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILS--RFDMIFIVK 512 (729)
T ss_pred c-------hhhhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcCCccccccccCCcccccchhhhHhh--hccEEEEEe
Confidence 2 12222221111 10 111 124556788888865 123 367787 999988887
Q ss_pred CCCHhhHHH
Q 007190 334 NPDVRGRQE 342 (613)
Q Consensus 334 ~Pd~~~R~~ 342 (613)
--..++|-.
T Consensus 513 D~h~~~~D~ 521 (729)
T KOG0481|consen 513 DEHDEERDI 521 (729)
T ss_pred ccCcchhhh
Confidence 554444433
No 308
>PHA02624 large T antigen; Provisional
Probab=97.46 E-value=0.00057 Score=77.18 Aligned_cols=117 Identities=16% Similarity=0.149 Sum_probs=69.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCc-cCC
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRK-QWE 281 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~-~~~ 281 (613)
+.++|+||||||||+++.+|++.++...+.++++.-...| ...-.....+++||++-.-.-... -..
T Consensus 432 ~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~F------------wL~pl~D~~~~l~dD~t~~~~~~~~Lp~ 499 (647)
T PHA02624 432 RYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLNF------------ELGCAIDQFMVVFEDVKGQPADNKDLPS 499 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhHH------------HhhhhhhceEEEeeeccccccccccCCc
Confidence 4899999999999999999999997667778755432222 111111123788888754322111 011
Q ss_pred cccHHHHHHHHHHhhcc-cc------CCc-----eEEEeecCCCCCCChhhcCCCccceEEEccC
Q 007190 282 GHTKKTLHQLLVEMDGF-EQ------NEG-----IILMAATNLPDILDPALTRPGRFDRHIVVPN 334 (613)
Q Consensus 282 ~~~~~~l~~LL~~ldg~-~~------~~~-----ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~ 334 (613)
+..-.-+..|-..+||. .- ... --.|.|||. ..||..+.- ||.+++.|..
T Consensus 500 G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~~ 561 (647)
T PHA02624 500 GQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFKP 561 (647)
T ss_pred ccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhccccc
Confidence 11122234455666764 10 000 134557775 567888877 9988888864
No 309
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.46 E-value=0.00086 Score=61.31 Aligned_cols=52 Identities=27% Similarity=0.409 Sum_probs=40.8
Q ss_pred cccCCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc
Q 007190 169 KDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 169 ~dV~G~~e~k~~L~eiv~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
+.|.|++-+++.+...+.. +.++ ..+.|.-+-|+||||||||.+++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~------~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANP------NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCC------CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 3579999999888886654 5443 23456667799999999999999999974
No 310
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.46 E-value=0.0005 Score=68.04 Aligned_cols=103 Identities=24% Similarity=0.343 Sum_probs=57.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHh-----cCCCe-------------eEeecchhh----hhhhhhhHHHHHHHHHHHHcC
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGE-----AGVPF-------------FYRAGSEFE----EMFVGVGARRVRSLFQAAKKK 260 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e-----~~~pf-------------i~is~s~~~----~~~~g~~~~~vr~lf~~A~~~ 260 (613)
+.++|+||+|+|||++.|.++.. .|.++ ..++..+-. +.+.. ...++..+++.+...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~-e~~~~~~iL~~~~~~ 104 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYA-ELRRLKEIVEKAKKG 104 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHH-HHHHHHHHHHhccCC
Confidence 57899999999999999999863 34322 111111110 11111 125567777777656
Q ss_pred CCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCCC
Q 007190 261 APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 315 (613)
Q Consensus 261 ~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~ 315 (613)
.|.++++||.-+-... .........++..+.. .+..+|.+|..++.
T Consensus 105 ~p~llllDEp~~glD~-----~~~~~l~~~ll~~l~~----~~~tiiivTH~~~~ 150 (199)
T cd03283 105 EPVLFLLDEIFKGTNS-----RERQAASAAVLKFLKN----KNTIGIISTHDLEL 150 (199)
T ss_pred CCeEEEEecccCCCCH-----HHHHHHHHHHHHHHHH----CCCEEEEEcCcHHH
Confidence 7899999996432110 0112233445555532 24456667776543
No 311
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.46 E-value=0.00062 Score=68.30 Aligned_cols=97 Identities=22% Similarity=0.233 Sum_probs=55.1
Q ss_pred CCCCCceEEEEccCCChHHHHHHHHHHhc----CCCeeEeecchhhhh--------------hhh---------------
Q 007190 198 GGKLPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGSEFEEM--------------FVG--------------- 244 (613)
Q Consensus 198 g~~~p~gvLL~GPpGTGKT~LAralA~e~----~~pfi~is~s~~~~~--------------~~g--------------- 244 (613)
|......+|++||||||||+|+..++.+. |-++++++..+-.+. +..
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc
Confidence 34445679999999999999999876433 788887765332111 000
Q ss_pred ----hhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhh
Q 007190 245 ----VGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMD 296 (613)
Q Consensus 245 ----~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ld 296 (613)
.....+..+....+...|..++||-+..+... .........+..+...+.
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~--~~~~~~r~~l~~l~~~l~ 148 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLSALLLY--DDPEELRRFLRALIKFLK 148 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTS--SSGGGHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhc--CCHHHHHHHHHHHHHHHH
Confidence 01122333444445566789999999998221 112223445555555553
No 312
>PRK14974 cell division protein FtsY; Provisional
Probab=97.45 E-value=0.0011 Score=70.73 Aligned_cols=73 Identities=26% Similarity=0.323 Sum_probs=44.9
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhh-------hhh---h----------hhHHHHHHHHHHH
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEE-------MFV---G----------VGARRVRSLFQAA 257 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~-------~~~---g----------~~~~~vr~lf~~A 257 (613)
.|.-++|+||||+|||+++..+|..+ +..+..+++..+.. .+. | .....+.+....+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 47789999999999999888888754 45555555543311 010 1 0112233444444
Q ss_pred HcCCCeEEEEcCCCcc
Q 007190 258 KKKAPCIIFIDEIDAV 273 (613)
Q Consensus 258 ~~~~P~ILfIDEiD~l 273 (613)
+.....+|+||....+
T Consensus 219 ~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 219 KARGIDVVLIDTAGRM 234 (336)
T ss_pred HhCCCCEEEEECCCcc
Confidence 5455568999988665
No 313
>PF14516 AAA_35: AAA-like domain
Probab=97.45 E-value=0.0059 Score=65.25 Aligned_cols=168 Identities=18% Similarity=0.173 Sum_probs=90.4
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhh-------hhhhh------------------------hH
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEE-------MFVGV------------------------GA 247 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~-------~~~g~------------------------~~ 247 (613)
..-+.+.||..+|||++...+.+.+ +...+++++..+.. .|... ..
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~ 110 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSK 110 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCCh
Confidence 3468999999999999999887654 67777777655321 11000 11
Q ss_pred HHHHHHHHHH---HcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhcccc----CCc--eEEEeecCCCCCCCh
Q 007190 248 RRVRSLFQAA---KKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQ----NEG--IILMAATNLPDILDP 318 (613)
Q Consensus 248 ~~vr~lf~~A---~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~----~~~--ViVIaaTN~p~~Ld~ 318 (613)
......|+.. ....|-||+|||+|.+.... ......+ .+|+.+-.-.. -.. +++++.|. +.....
T Consensus 111 ~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~----~~~~dF~-~~LR~~~~~~~~~~~~~~L~li~~~~t~-~~~~~~ 184 (331)
T PF14516_consen 111 ISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYP----QIADDFF-GLLRSWYEQRKNNPIWQKLRLILAGSTE-DYIILD 184 (331)
T ss_pred hhHHHHHHHHHHhcCCCCEEEEEechhhhccCc----chHHHHH-HHHHHHHHhcccCcccceEEEEEecCcc-cccccC
Confidence 1233344431 22468899999999995421 1112222 22222211111 112 33333332 222211
Q ss_pred hhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHH
Q 007190 319 ALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVN 379 (613)
Q Consensus 319 aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~ 379 (613)
.-.+|=.+...|.++.-+.++-..+++.|-.. .. ...++.+-..|.|. |.=+..+|.
T Consensus 185 ~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~~-~~~~~~l~~~tgGh-P~Lv~~~~~ 241 (331)
T PF14516_consen 185 INQSPFNIGQPIELPDFTPEEVQELAQRYGLE--FS-QEQLEQLMDWTGGH-PYLVQKACY 241 (331)
T ss_pred CCCCCcccccceeCCCCCHHHHHHHHHhhhcc--CC-HHHHHHHHHHHCCC-HHHHHHHHH
Confidence 22344334457777888889988888877433 22 23377788888773 443434443
No 314
>PRK10536 hypothetical protein; Provisional
Probab=97.45 E-value=0.00055 Score=70.10 Aligned_cols=45 Identities=27% Similarity=0.408 Sum_probs=32.1
Q ss_pred CCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHh
Q 007190 167 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 167 ~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e 225 (613)
.|.-|.+.......+...+. +. .-+++.||+|||||+||.+++.+
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~---~~-----------~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIE---SK-----------QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CCccccCCCHHHHHHHHHHh---cC-----------CeEEEECCCCCCHHHHHHHHHHH
Confidence 45556666666555554432 21 26999999999999999999885
No 315
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.44 E-value=0.0011 Score=67.04 Aligned_cols=38 Identities=29% Similarity=0.399 Sum_probs=29.6
Q ss_pred CCCCCceEEEEccCCChHHHHHHHHHHhc----CCCeeEeec
Q 007190 198 GGKLPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAG 235 (613)
Q Consensus 198 g~~~p~gvLL~GPpGTGKT~LAralA~e~----~~pfi~is~ 235 (613)
|..+..-++|.|+||+|||+++..++... +.++++++.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 44445568999999999999999886643 778877774
No 316
>PRK06762 hypothetical protein; Provisional
Probab=97.43 E-value=0.00045 Score=65.76 Aligned_cols=40 Identities=23% Similarity=0.363 Sum_probs=32.6
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhh
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 240 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~ 240 (613)
+|.-++|+|+||+|||++|+.+++.++..++.++...+..
T Consensus 1 m~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~ 40 (166)
T PRK06762 1 MTTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRR 40 (166)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHH
Confidence 3567999999999999999999999866676677655544
No 317
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.41 E-value=0.001 Score=80.02 Aligned_cols=187 Identities=20% Similarity=0.229 Sum_probs=103.8
Q ss_pred CCceEEEEccCCChHHHH-HHHHHHhcCCCeeEeecchhhhhhhhhhHHHHHHHHHHHHcC---------------CCeE
Q 007190 201 LPKGILLTGAPGTGKTLL-AKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKK---------------APCI 264 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~L-AralA~e~~~pfi~is~s~~~~~~~g~~~~~vr~lf~~A~~~---------------~P~I 264 (613)
.-+++++|||||+|||++ .-++-.+.-..+++++.+..... ...++ ++.+-... .--|
T Consensus 1493 t~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T-----~s~ls-~Ler~t~yy~~tg~~~l~PK~~vK~lV 1566 (3164)
T COG5245 1493 TLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMT-----PSKLS-VLERETEYYPNTGVVRLYPKPVVKDLV 1566 (3164)
T ss_pred ccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCC-----HHHHH-HHHhhceeeccCCeEEEccCcchhheE
Confidence 447999999999999985 56777888888888876643221 11111 11111111 0139
Q ss_pred EEEcCCCccccCCccCCcccHHHHHHHHHHhhcccc--------CCceEEEeecCCCCCCChhhcCCCccce---EEEcc
Q 007190 265 IFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQ--------NEGIILMAATNLPDILDPALTRPGRFDR---HIVVP 333 (613)
Q Consensus 265 LfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~--------~~~ViVIaaTN~p~~Ld~aLlRpgRFd~---~I~v~ 333 (613)
||.|||. +...+.-.....--.+.+|+ +-.||-. =.++++.|+||.+.... ...-|-||-+ .+.+.
T Consensus 1567 LFcDeIn-Lp~~~~y~~~~vI~FlR~l~-e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~g-Rv~~~eRf~r~~v~vf~~ 1643 (3164)
T COG5245 1567 LFCDEIN-LPYGFEYYPPTVIVFLRPLV-ERQGFWSSIAVSWVTICGIILYGACNPGTDEG-RVKYYERFIRKPVFVFCC 1643 (3164)
T ss_pred EEeeccC-CccccccCCCceEEeeHHHH-HhcccccchhhhHhhhcceEEEccCCCCCCcc-cCccHHHHhcCceEEEec
Confidence 9999999 53332222211111122222 2233322 25789999999886532 1111223433 67888
Q ss_pred CCCHhhHHHHHHHHhccCCCCC-h------------hcH--------HHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCc
Q 007190 334 NPDVRGRQEILELYLQDKPLAD-D------------VDV--------KAIARGTPGFNGADLANLVNIAAIKAAVDGGEK 392 (613)
Q Consensus 334 ~Pd~~~R~~IL~~~l~~~~l~~-d------------~dl--------~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~ 392 (613)
.|.......|.+.++.+..+-- . +.+ ....+.--||+|+||-..++. ...++..+.+.
T Consensus 1644 ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr~-i~~yaeT~~~t 1722 (3164)
T COG5245 1644 YPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRSLRA-IFGYAETRIDT 1722 (3164)
T ss_pred CcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHHHHH-HHhHHhcCCCC
Confidence 9999999999988776532211 1 111 011122357999999999874 44444433333
Q ss_pred cCHHH
Q 007190 393 LTATE 397 (613)
Q Consensus 393 It~~d 397 (613)
-...+
T Consensus 1723 ~~~sl 1727 (3164)
T COG5245 1723 PDVSL 1727 (3164)
T ss_pred CcHHH
Confidence 33333
No 318
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.40 E-value=0.00015 Score=69.50 Aligned_cols=59 Identities=22% Similarity=0.366 Sum_probs=35.9
Q ss_pred cCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCC---eeEeecchh
Q 007190 171 VKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP---FFYRAGSEF 238 (613)
Q Consensus 171 V~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~p---fi~is~s~~ 238 (613)
++|.++..+++...+. .. ....|+.++|+||||+|||++++++...+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~-~~--------~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AA--------QSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GT--------SS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-HH--------HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 4788877666665553 11 23345789999999999999999997766333 777777665
No 319
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.38 E-value=0.00079 Score=69.18 Aligned_cols=73 Identities=26% Similarity=0.401 Sum_probs=49.2
Q ss_pred ceEEEEccCCChHHHHHHHHHH------hcCCCeeEeecchhhhhh-hhhhHHHHHHHHHHHH--------cCCCeEEEE
Q 007190 203 KGILLTGAPGTGKTLLAKAIAG------EAGVPFFYRAGSEFEEMF-VGVGARRVRSLFQAAK--------KKAPCIIFI 267 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~------e~~~pfi~is~s~~~~~~-~g~~~~~vr~lf~~A~--------~~~P~ILfI 267 (613)
..+||.||.|.||+.||+-+-. .+..+|+.++|..+...- +...-..++..|.-|+ .....++|+
T Consensus 209 ~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlfl 288 (531)
T COG4650 209 APILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLFL 288 (531)
T ss_pred CCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEeh
Confidence 3599999999999999999854 457899999998874321 1111122333333222 223459999
Q ss_pred cCCCcccc
Q 007190 268 DEIDAVGS 275 (613)
Q Consensus 268 DEiD~l~~ 275 (613)
|||..++.
T Consensus 289 deigelga 296 (531)
T COG4650 289 DEIGELGA 296 (531)
T ss_pred HhhhhcCc
Confidence 99999864
No 320
>PRK05973 replicative DNA helicase; Provisional
Probab=97.37 E-value=0.0016 Score=66.19 Aligned_cols=35 Identities=37% Similarity=0.409 Sum_probs=27.6
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecc
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGS 236 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s 236 (613)
..-+++.|+||+|||+++-.++.+. |.+.++++..
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 3458899999999999999887644 7777777654
No 321
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.34 E-value=0.0014 Score=66.46 Aligned_cols=40 Identities=35% Similarity=0.517 Sum_probs=29.9
Q ss_pred CCCCCceEEEEccCCChHHHHHHHHHHh---cCCCeeEeecch
Q 007190 198 GGKLPKGILLTGAPGTGKTLLAKAIAGE---AGVPFFYRAGSE 237 (613)
Q Consensus 198 g~~~p~gvLL~GPpGTGKT~LAralA~e---~~~pfi~is~s~ 237 (613)
|..+...+|++||||||||+++..++.+ .|-+.++++..+
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 3444567999999999999999877554 367777776544
No 322
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.31 E-value=0.00096 Score=64.44 Aligned_cols=34 Identities=32% Similarity=0.571 Sum_probs=29.6
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeEeecch
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE 237 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~ 237 (613)
.+|+.||||+|||++|..++.+.+.+++++....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~ 36 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQ 36 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCC
Confidence 4899999999999999999999888888776543
No 323
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.30 E-value=0.00086 Score=65.97 Aligned_cols=68 Identities=28% Similarity=0.398 Sum_probs=40.7
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCC---CeeEeec------------chhhhhhhhhhHHHHHHHHHHHHcCCCeEEEEc
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGV---PFFYRAG------------SEFEEMFVGVGARRVRSLFQAAKKKAPCIIFID 268 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~---pfi~is~------------s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfID 268 (613)
-++|+|+||+|||++|+.+|+++.- ..+.+.. .-+.+.|.....+....+...|-++ -+++.|
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~~ks~~rlldSalkn--~~VIvD 80 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESFLKSVERLLDSALKN--YLVIVD 80 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHHHHHHHHHHHHHHHHHHHHhcc--eEEEEe
Confidence 3889999999999999999998732 1221111 1112223222223333355555543 488889
Q ss_pred CCCcc
Q 007190 269 EIDAV 273 (613)
Q Consensus 269 EiD~l 273 (613)
+..+.
T Consensus 81 dtNYy 85 (261)
T COG4088 81 DTNYY 85 (261)
T ss_pred cccHH
Confidence 88777
No 324
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.30 E-value=0.00076 Score=68.29 Aligned_cols=21 Identities=38% Similarity=0.618 Sum_probs=19.7
Q ss_pred eEEEEccCCChHHHHHHHHHH
Q 007190 204 GILLTGAPGTGKTLLAKAIAG 224 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~ 224 (613)
-+-|.||+|||||||.+.+|+
T Consensus 31 fvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 388999999999999999998
No 325
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.30 E-value=0.0031 Score=63.85 Aligned_cols=149 Identities=14% Similarity=0.120 Sum_probs=100.6
Q ss_pred CCCCceEEEEccCC-ChHHHHHHHHHHhcCC--------C-eeEeecchhhhh-hhhhhHHHHHHHHHHHH----cCCCe
Q 007190 199 GKLPKGILLTGAPG-TGKTLLAKAIAGEAGV--------P-FFYRAGSEFEEM-FVGVGARRVRSLFQAAK----KKAPC 263 (613)
Q Consensus 199 ~~~p~gvLL~GPpG-TGKT~LAralA~e~~~--------p-fi~is~s~~~~~-~~g~~~~~vr~lf~~A~----~~~P~ 263 (613)
.+.....||.|..+ +||..++.-++..... | ++.+....-... -...+...+|++-+.+. .....
T Consensus 12 ~kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~K 91 (263)
T PRK06581 12 NKLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYK 91 (263)
T ss_pred CcchheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcE
Confidence 44556899999998 9999998888775522 2 333322110000 00113345666555443 23456
Q ss_pred EEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHH
Q 007190 264 IIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEI 343 (613)
Q Consensus 264 ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~I 343 (613)
|++|+++|.+ .....|.||+.++. +..++++|..|+.+..|.|.+++ |+ ..+.++.|+...-.+.
T Consensus 92 ViII~~ae~m----------t~~AANALLKtLEE--PP~~t~fILit~~~~~LLpTIrS--RC-q~i~~~~p~~~~~~e~ 156 (263)
T PRK06581 92 VAIIYSAELM----------NLNAANSCLKILED--APKNSYIFLITSRAASIISTIRS--RC-FKINVRSSILHAYNEL 156 (263)
T ss_pred EEEEechHHh----------CHHHHHHHHHhhcC--CCCCeEEEEEeCChhhCchhHhh--ce-EEEeCCCCCHHHHHHH
Confidence 9999999999 46788999999994 66777888888889999999998 88 7889999998887777
Q ss_pred HHHHhccCCCCChhcHHHHHh
Q 007190 344 LELYLQDKPLADDVDVKAIAR 364 (613)
Q Consensus 344 L~~~l~~~~l~~d~dl~~la~ 364 (613)
...++.... .+..++-|.+
T Consensus 157 ~~~~~~p~~--~~~~l~~i~~ 175 (263)
T PRK06581 157 YSQFIQPIA--DNKTLDFINR 175 (263)
T ss_pred HHHhccccc--ccHHHHHHHH
Confidence 777765432 3333444444
No 326
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.29 E-value=0.00094 Score=65.95 Aligned_cols=67 Identities=24% Similarity=0.358 Sum_probs=41.5
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCC----eeEeec-chhhh----h-----hhhhhHHHHHHHHHHHHcCCCeEEEEcC
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVP----FFYRAG-SEFEE----M-----FVGVGARRVRSLFQAAKKKAPCIIFIDE 269 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~p----fi~is~-s~~~~----~-----~~g~~~~~vr~lf~~A~~~~P~ILfIDE 269 (613)
-++++||+|+|||++++++++....+ ++.+.. .++.. . -++.......+.++.+....|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 47899999999999999998876422 222211 11110 0 0111122344555666667899999999
Q ss_pred C
Q 007190 270 I 270 (613)
Q Consensus 270 i 270 (613)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 7
No 327
>PRK09354 recA recombinase A; Provisional
Probab=97.29 E-value=0.00089 Score=71.64 Aligned_cols=107 Identities=17% Similarity=0.213 Sum_probs=61.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhh-hh---------------hhhHHHHHHHHHHHHcCCCe
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM-FV---------------GVGARRVRSLFQAAKKKAPC 263 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~-~~---------------g~~~~~vr~lf~~A~~~~P~ 263 (613)
+-++++||||||||+||-.++.++ |.++++++...-... +. ...+..+..+-...+...+.
T Consensus 61 ~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~~ 140 (349)
T PRK09354 61 RIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVD 140 (349)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCCC
Confidence 457899999999999999886543 677788776542111 10 01112222222334567789
Q ss_pred EEEEcCCCccccCCc---cCC----cccHHHHHHHHHHhhccccCCceEEEee
Q 007190 264 IIFIDEIDAVGSTRK---QWE----GHTKKTLHQLLVEMDGFEQNEGIILMAA 309 (613)
Q Consensus 264 ILfIDEiD~l~~~r~---~~~----~~~~~~l~~LL~~ldg~~~~~~ViVIaa 309 (613)
+|+||=+-++.+..+ ... +...+.+.+.|..+-++-...++.+|.+
T Consensus 141 lIVIDSvaaL~~~~E~eg~~gd~~~~~qar~ms~~Lr~L~~~l~k~~itvI~t 193 (349)
T PRK09354 141 LIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNISKSNTTVIFI 193 (349)
T ss_pred EEEEeChhhhcchhhhcCCccccchhHHHHHHHHHHHHHHHHHHHcCcEEEEE
Confidence 999999999865311 100 1112334454544444444556666655
No 328
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.28 E-value=0.00044 Score=66.65 Aligned_cols=23 Identities=48% Similarity=0.746 Sum_probs=20.4
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~ 226 (613)
.++|+|+||+||||+++.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 48999999999999999999887
No 329
>PRK13947 shikimate kinase; Provisional
Probab=97.27 E-value=0.00025 Score=67.74 Aligned_cols=31 Identities=35% Similarity=0.465 Sum_probs=28.5
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeEee
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 234 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~is 234 (613)
+|+|.|+||||||++++.+|+.++.||+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5999999999999999999999999997644
No 330
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.25 E-value=0.00033 Score=72.28 Aligned_cols=99 Identities=21% Similarity=0.279 Sum_probs=59.7
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCC---eeEee-cchhh
Q 007190 164 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP---FFYRA-GSEFE 239 (613)
Q Consensus 164 ~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~p---fi~is-~s~~~ 239 (613)
...+++++.-.....+.+.+++...- +...+++++||+|+|||++++++..+.... ++.+. ..++.
T Consensus 99 ~~~sle~l~~~~~~~~~~~~~l~~~v----------~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 99 KPFSLEDLGESGSIPEEIAEFLRSAV----------RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELR 168 (270)
T ss_dssp S--CHCCCCHTHHCHHHHHHHHHHCH----------HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S-
T ss_pred ccccHhhccCchhhHHHHHHHHhhcc----------ccceEEEEECCCccccchHHHHHhhhccccccceEEecccccee
Confidence 44578888777666666666554321 112479999999999999999999877433 33322 11111
Q ss_pred hh------h-hhhhHHHHHHHHHHHHcCCCeEEEEcCCCc
Q 007190 240 EM------F-VGVGARRVRSLFQAAKKKAPCIIFIDEIDA 272 (613)
Q Consensus 240 ~~------~-~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~ 272 (613)
-. + .........+++..+....|++|+|+|+-.
T Consensus 169 l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~ 208 (270)
T PF00437_consen 169 LPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRD 208 (270)
T ss_dssp -SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-S
T ss_pred ecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCC
Confidence 00 0 011233466777788888999999999854
No 331
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.25 E-value=0.0014 Score=67.48 Aligned_cols=37 Identities=27% Similarity=0.201 Sum_probs=28.5
Q ss_pred CCCCceEEEEccCCChHHHHHHHHHHhc----CCCeeEeec
Q 007190 199 GKLPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAG 235 (613)
Q Consensus 199 ~~~p~gvLL~GPpGTGKT~LAralA~e~----~~pfi~is~ 235 (613)
.....-++|.||||+|||+++..++..+ +.++++++.
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 3344568999999999999999887653 667777765
No 332
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.24 E-value=0.0019 Score=65.93 Aligned_cols=36 Identities=31% Similarity=0.523 Sum_probs=29.1
Q ss_pred EEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhh
Q 007190 205 ILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEE 240 (613)
Q Consensus 205 vLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~ 240 (613)
|+|+|+||+|||++|+.++..+ +.+++.++...+.+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~ 40 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRE 40 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHH
Confidence 7899999999999999999876 56677776654433
No 333
>PRK00625 shikimate kinase; Provisional
Probab=97.24 E-value=0.00028 Score=68.38 Aligned_cols=31 Identities=42% Similarity=0.626 Sum_probs=28.9
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeEee
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 234 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~is 234 (613)
.|+|+|+||+|||++++.+|+.++.+|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999998765
No 334
>PRK03839 putative kinase; Provisional
Probab=97.21 E-value=0.00027 Score=68.34 Aligned_cols=31 Identities=35% Similarity=0.550 Sum_probs=28.1
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeEee
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 234 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~is 234 (613)
.|+|.|+||+||||+++.+|+.++.+|+.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3899999999999999999999999987643
No 335
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.21 E-value=0.0035 Score=69.29 Aligned_cols=72 Identities=24% Similarity=0.301 Sum_probs=46.3
Q ss_pred CCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhh-------h--------hh-----hhHHHHHHHHHH
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM-------F--------VG-----VGARRVRSLFQA 256 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~-------~--------~g-----~~~~~vr~lf~~ 256 (613)
..|..++|+|+||+|||+++..+|..+ |..+..+++..+... + .+ .....+++....
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 468899999999999999999998765 555665655443110 0 11 011223445555
Q ss_pred HHcCCCeEEEEcCCCcc
Q 007190 257 AKKKAPCIIFIDEIDAV 273 (613)
Q Consensus 257 A~~~~P~ILfIDEiD~l 273 (613)
++.. .+|+||....+
T Consensus 173 ~~~~--DvVIIDTAGr~ 187 (437)
T PRK00771 173 FKKA--DVIIVDTAGRH 187 (437)
T ss_pred hhcC--CEEEEECCCcc
Confidence 5444 68999987655
No 336
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.20 E-value=0.0011 Score=61.25 Aligned_cols=30 Identities=33% Similarity=0.687 Sum_probs=28.1
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCeeEee
Q 007190 205 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 234 (613)
Q Consensus 205 vLL~GPpGTGKT~LAralA~e~~~pfi~is 234 (613)
+.++|+||+|||++|+.+|..++.|++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999998766
No 337
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.20 E-value=0.004 Score=74.83 Aligned_cols=155 Identities=15% Similarity=0.236 Sum_probs=83.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCeeEeecc--h-----hhhhhh--------hh---------------hHHHHHH
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGS--E-----FEEMFV--------GV---------------GARRVRS 252 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s--~-----~~~~~~--------g~---------------~~~~vr~ 252 (613)
+-++++||+|.|||+++...+...+ ++..++.. + |...+. +. ....+..
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 3699999999999999999987776 66555442 1 111000 00 0011223
Q ss_pred HHHHHHc-CCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCCCCCh-hhcCCCccceEE
Q 007190 253 LFQAAKK-KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDP-ALTRPGRFDRHI 330 (613)
Q Consensus 253 lf~~A~~-~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~-aLlRpgRFd~~I 330 (613)
++..... ..|.+|+|||++.+-. ......+..|+..+ +....+|| ++.....++- .+... +..+
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~~------~~~~~~l~~l~~~~----~~~~~lv~-~sR~~~~~~~~~l~~~---~~~~ 177 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLITN------PEIHEAMRFFLRHQ----PENLTLVV-LSRNLPPLGIANLRVR---DQLL 177 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCCC------hHHHHHHHHHHHhC----CCCeEEEE-EeCCCCCCchHhHHhc---Ccce
Confidence 3333333 6789999999998821 11223344444322 22333444 4443212221 11111 1233
Q ss_pred Ecc----CCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHH
Q 007190 331 VVP----NPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLA 375 (613)
Q Consensus 331 ~v~----~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~ 375 (613)
.+. ..+.++-.+++...+... + +..+...+.+.|.|+. .-+.
T Consensus 178 ~l~~~~l~f~~~e~~~ll~~~~~~~-~-~~~~~~~l~~~t~Gwp-~~l~ 223 (903)
T PRK04841 178 EIGSQQLAFDHQEAQQFFDQRLSSP-I-EAAESSRLCDDVEGWA-TALQ 223 (903)
T ss_pred ecCHHhCCCCHHHHHHHHHhccCCC-C-CHHHHHHHHHHhCChH-HHHH
Confidence 444 567888888887655432 2 4556778889998854 3344
No 338
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.19 E-value=0.00033 Score=65.40 Aligned_cols=31 Identities=35% Similarity=0.600 Sum_probs=27.7
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeEee
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 234 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~is 234 (613)
+++|+||||+|||++|+.+|..++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 3899999999999999999999999887543
No 339
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.18 E-value=0.0011 Score=63.89 Aligned_cols=32 Identities=31% Similarity=0.554 Sum_probs=29.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCeeEee
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 234 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~~pfi~is 234 (613)
+.+.|+|++|+|||++.+++|+.++.||+-.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 46999999999999999999999999998654
No 340
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.17 E-value=0.0021 Score=65.89 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=23.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCC
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAGV 228 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~~ 228 (613)
.-++|.||+|+|||++++.+++....
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccc
Confidence 45999999999999999999987653
No 341
>PRK13946 shikimate kinase; Provisional
Probab=97.16 E-value=0.0011 Score=64.68 Aligned_cols=34 Identities=26% Similarity=0.513 Sum_probs=30.7
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcCCCeeEee
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 234 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is 234 (613)
.++.|+|.|+||+|||++++.+|+.+|.||+..+
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 4568999999999999999999999999998655
No 342
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.16 E-value=0.0021 Score=63.57 Aligned_cols=108 Identities=22% Similarity=0.326 Sum_probs=58.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhh-------hhh---hh----------hhHHHHHHHHHHHH
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFE-------EMF---VG----------VGARRVRSLFQAAK 258 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~-------~~~---~g----------~~~~~vr~lf~~A~ 258 (613)
|+-++|+||+|+|||+.+-.+|..+ +..+-.+++..+. ..| .+ ......++.++..+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 6789999999999999988888754 4444434333221 111 11 11233445555565
Q ss_pred cCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCCCCC
Q 007190 259 KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILD 317 (613)
Q Consensus 259 ~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld 317 (613)
...-.+|+||=.... ......+.++-..++...+..-++|+.++-..+.++
T Consensus 81 ~~~~D~vlIDT~Gr~--------~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRS--------PRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLE 131 (196)
T ss_dssp HTTSSEEEEEE-SSS--------STHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHH
T ss_pred hcCCCEEEEecCCcc--------hhhHHHHHHHHHHhhhcCCccceEEEecccChHHHH
Confidence 554568998875332 112333333333333333445566666666555554
No 343
>PLN02200 adenylate kinase family protein
Probab=97.15 E-value=0.00053 Score=69.64 Aligned_cols=42 Identities=21% Similarity=0.294 Sum_probs=34.1
Q ss_pred CCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhh
Q 007190 198 GGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM 241 (613)
Q Consensus 198 g~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~ 241 (613)
+.+.|.-+++.||||+|||++|+.+|.+.|.+ .++.+++...
T Consensus 39 ~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR~ 80 (234)
T PLN02200 39 KEKTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLRR 80 (234)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHHH
Confidence 45567789999999999999999999999865 5666666543
No 344
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.15 E-value=0.00043 Score=66.80 Aligned_cols=38 Identities=26% Similarity=0.436 Sum_probs=32.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhh
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 240 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~ 240 (613)
+-++|+||||+|||++|+.++.+.+.+++.++...+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~ 40 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIE 40 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHH
Confidence 46899999999999999999999988888776655543
No 345
>PRK13948 shikimate kinase; Provisional
Probab=97.14 E-value=0.00074 Score=65.97 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=34.8
Q ss_pred CCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhhhhh
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVG 244 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~~~g 244 (613)
++|..++|.|++|+|||++++.+|+.++.+|+..+ .+.+...|
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D--~~ie~~~g 50 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD--RYIERVTG 50 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC--HHHHHHHh
Confidence 45688999999999999999999999999998554 34444333
No 346
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.14 E-value=0.00037 Score=73.36 Aligned_cols=69 Identities=28% Similarity=0.388 Sum_probs=45.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC-----CCeeEeec-chhh-------hhhhhhhHHHHHHHHHHHHcCCCeEEEEcC
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAG-----VPFFYRAG-SEFE-------EMFVGVGARRVRSLFQAAKKKAPCIIFIDE 269 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~-----~pfi~is~-s~~~-------~~~~g~~~~~vr~lf~~A~~~~P~ILfIDE 269 (613)
++++++||+|+|||++++++.+... ..++.+.- .++. ............+++..+....|..|++.|
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivGE 212 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVGE 212 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 5899999999999999999998752 22333221 1110 101111122566777788888899999988
Q ss_pred CC
Q 007190 270 ID 271 (613)
Q Consensus 270 iD 271 (613)
+-
T Consensus 213 iR 214 (299)
T TIGR02782 213 VR 214 (299)
T ss_pred cC
Confidence 74
No 347
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.12 E-value=0.0029 Score=65.18 Aligned_cols=37 Identities=27% Similarity=0.372 Sum_probs=28.2
Q ss_pred CCCceEEEEccCCChHHHHHHHHHHh---cCCCeeEeecc
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAGE---AGVPFFYRAGS 236 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~e---~~~pfi~is~s 236 (613)
.....++++||||||||+++..++.+ .|-+.++++..
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 34456899999999999999988664 25677777654
No 348
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.11 E-value=0.0057 Score=66.34 Aligned_cols=104 Identities=15% Similarity=0.120 Sum_probs=58.2
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhh----hh---h---------hhhhHHHHHHHHHHHHc-C
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFE----EM---F---------VGVGARRVRSLFQAAKK-K 260 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~----~~---~---------~g~~~~~vr~lf~~A~~-~ 260 (613)
.|+-++|+||+|+|||+++..||..+ +..+..+++..+. +. | .......+.+....++. .
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 46789999999999999999999865 3445555543331 11 1 01123344455554443 2
Q ss_pred CCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCC
Q 007190 261 APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNL 312 (613)
Q Consensus 261 ~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~ 312 (613)
...+||||-..... .....+.++...++...+...++|+.+|..
T Consensus 320 ~~DvVLIDTaGRs~--------kd~~lm~EL~~~lk~~~PdevlLVLsATtk 363 (436)
T PRK11889 320 RVDYILIDTAGKNY--------RASETVEEMIETMGQVEPDYICLTLSASMK 363 (436)
T ss_pred CCCEEEEeCccccC--------cCHHHHHHHHHHHhhcCCCeEEEEECCccC
Confidence 34688888654431 123445555555544333334455544443
No 349
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.11 E-value=0.00041 Score=66.97 Aligned_cols=35 Identities=20% Similarity=0.399 Sum_probs=28.4
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhh
Q 007190 205 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM 241 (613)
Q Consensus 205 vLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~ 241 (613)
++++||||+|||++|+.+|.+.+.+ .++.+++...
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~--~is~~d~lr~ 36 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFT--HLSAGDLLRA 36 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCe--EEECChHHHH
Confidence 7899999999999999999999854 4555555443
No 350
>PRK13949 shikimate kinase; Provisional
Probab=97.11 E-value=0.00043 Score=66.71 Aligned_cols=31 Identities=45% Similarity=0.618 Sum_probs=28.9
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeEee
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 234 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~is 234 (613)
.|+|+||||+|||++++.+|+.++.+|+..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5999999999999999999999999988765
No 351
>PRK14531 adenylate kinase; Provisional
Probab=97.08 E-value=0.00053 Score=66.73 Aligned_cols=35 Identities=23% Similarity=0.464 Sum_probs=29.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhh
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 239 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~ 239 (613)
+.++++||||+|||++++.+|...|.+++. ..++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is--~gd~l 37 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS--TGDLL 37 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe--cccHH
Confidence 469999999999999999999999877654 44443
No 352
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.07 E-value=0.00072 Score=73.06 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.4
Q ss_pred eEEEEccCCChHHHHHHHHHHhcC
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAG 227 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~ 227 (613)
-.+|+||||+|||+|++.|++...
T Consensus 171 R~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 171 RGLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred eEEEeCCCCCChhHHHHHHHHHHH
Confidence 389999999999999999998663
No 353
>PRK14532 adenylate kinase; Provisional
Probab=97.07 E-value=0.00049 Score=66.96 Aligned_cols=36 Identities=25% Similarity=0.434 Sum_probs=29.4
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhh
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM 241 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~ 241 (613)
.++|.||||+|||++|+.+|+..|.+++ +..++...
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i--s~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL--STGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE--eCcHHHHH
Confidence 4899999999999999999999986554 55555544
No 354
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.05 E-value=0.0056 Score=60.56 Aligned_cols=30 Identities=27% Similarity=0.418 Sum_probs=26.5
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCee
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEAGVPFF 231 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~~~pfi 231 (613)
|.-++++|+||+|||++|+.+|.+++.+++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~~ 32 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDIV 32 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 457999999999999999999999987653
No 355
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.05 E-value=0.00044 Score=64.64 Aligned_cols=31 Identities=42% Similarity=0.751 Sum_probs=28.4
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeEee
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 234 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~is 234 (613)
++|++|-||||||+++..+|...+.+++.++
T Consensus 9 NILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 7999999999999999999999998887653
No 356
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.05 E-value=0.02 Score=60.71 Aligned_cols=115 Identities=20% Similarity=0.304 Sum_probs=62.3
Q ss_pred CCeEEEEcCCCccccCCccCCc-------ccHHHHHHHHHHhhcccc-CCceEE--EeecCC---CC--CCChhhcCCCc
Q 007190 261 APCIIFIDEIDAVGSTRKQWEG-------HTKKTLHQLLVEMDGFEQ-NEGIIL--MAATNL---PD--ILDPALTRPGR 325 (613)
Q Consensus 261 ~P~ILfIDEiD~l~~~r~~~~~-------~~~~~l~~LL~~ldg~~~-~~~ViV--IaaTN~---p~--~Ld~aLlRpgR 325 (613)
-|.++-||++.++.....-.+. +.-.....|+..+.+-.. ..+.+| +++|.. +. .++.++....-
T Consensus 156 ~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~~~~~l~~~L~~~~~ 235 (309)
T PF10236_consen 156 PPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAPKSPTLPVALGGKEG 235 (309)
T ss_pred CceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEeccccccccCCccchhhhccccC
Confidence 4778889999999766321111 112333444444333222 344444 555542 22 45555543111
Q ss_pred ------cc-------------eEEEccCCCHhhHHHHHHHHhccCCCCC----hhcHHHHHhcCCCCCHHHHHH
Q 007190 326 ------FD-------------RHIVVPNPDVRGRQEILELYLQDKPLAD----DVDVKAIARGTPGFNGADLAN 376 (613)
Q Consensus 326 ------Fd-------------~~I~v~~Pd~~~R~~IL~~~l~~~~l~~----d~dl~~la~~t~G~sgadL~~ 376 (613)
|. ..|.++..+.+|-..+++.|....-+.. ..-.+.+.-.+. .+++++..
T Consensus 236 ~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~-GNp~el~k 308 (309)
T PF10236_consen 236 FPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSN-GNPRELEK 308 (309)
T ss_pred CCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcC-CCHHHhcc
Confidence 11 1678999999999999999987654432 222334444333 46766643
No 357
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.05 E-value=0.00065 Score=66.30 Aligned_cols=70 Identities=26% Similarity=0.411 Sum_probs=43.9
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCC--CeeEeecc-hhh-------hh------hhhhhHHHHHHHHHHHHcCCCeEE
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEAGV--PFFYRAGS-EFE-------EM------FVGVGARRVRSLFQAAKKKAPCII 265 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~~~--pfi~is~s-~~~-------~~------~~g~~~~~vr~lf~~A~~~~P~IL 265 (613)
...+++.||+|+|||++++++++.... ..+.+... ++. .. ..+.......+++..+....|.++
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i 104 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRI 104 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEE
Confidence 357999999999999999999986531 12222110 110 00 001112345667777777889999
Q ss_pred EEcCCC
Q 007190 266 FIDEID 271 (613)
Q Consensus 266 fIDEiD 271 (613)
+++|+-
T Consensus 105 ~igEir 110 (186)
T cd01130 105 IVGEVR 110 (186)
T ss_pred EEEccC
Confidence 999984
No 358
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.05 E-value=0.0052 Score=61.47 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.8
Q ss_pred CceEEEEccCCChHHHHHHHHHH
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAG 224 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~ 224 (613)
++.++|+||.|+|||++.|.++.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 46799999999999999999983
No 359
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.05 E-value=0.0031 Score=63.10 Aligned_cols=71 Identities=28% Similarity=0.381 Sum_probs=46.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc--C------CCeeEeec-chhhhhhhhhh-------------HHHHHHHHHHHHcC
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA--G------VPFFYRAG-SEFEEMFVGVG-------------ARRVRSLFQAAKKK 260 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~--~------~pfi~is~-s~~~~~~~g~~-------------~~~vr~lf~~A~~~ 260 (613)
.+.|+.||||||||++.|-+|+-. + ..+..++- +++.....|.. .-+-..+....+.+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 368999999999999999999854 2 22333332 33322222221 12233466667889
Q ss_pred CCeEEEEcCCCcc
Q 007190 261 APCIIFIDEIDAV 273 (613)
Q Consensus 261 ~P~ILfIDEiD~l 273 (613)
.|.++++|||...
T Consensus 218 ~PEViIvDEIGt~ 230 (308)
T COG3854 218 SPEVIIVDEIGTE 230 (308)
T ss_pred CCcEEEEeccccH
Confidence 9999999999654
No 360
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.02 E-value=0.0022 Score=60.35 Aligned_cols=35 Identities=34% Similarity=0.651 Sum_probs=28.9
Q ss_pred EEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhh
Q 007190 205 ILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFE 239 (613)
Q Consensus 205 vLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~ 239 (613)
++++|+||+|||++|+.++..+ +.+.+.++...+.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r 39 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVR 39 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence 7899999999999999999987 6666777655443
No 361
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.02 E-value=0.0049 Score=61.75 Aligned_cols=38 Identities=26% Similarity=0.274 Sum_probs=29.0
Q ss_pred CCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecch
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSE 237 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~ 237 (613)
.....+++.|+||+|||+++..++.+. +.++++++..+
T Consensus 14 ~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 14 PEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE 54 (224)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 334568999999999999999887543 67777776543
No 362
>PRK06217 hypothetical protein; Validated
Probab=97.00 E-value=0.00062 Score=66.20 Aligned_cols=31 Identities=35% Similarity=0.552 Sum_probs=28.3
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeEee
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 234 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~is 234 (613)
.|+|.|+||+|||+++++|++.++.|++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999999987654
No 363
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.99 E-value=0.0015 Score=70.12 Aligned_cols=69 Identities=23% Similarity=0.313 Sum_probs=44.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCC----CeeEee-cchhhh---------hhhhhhHHHHHHHHHHHHcCCCeEEEEc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAGV----PFFYRA-GSEFEE---------MFVGVGARRVRSLFQAAKKKAPCIIFID 268 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~~----pfi~is-~s~~~~---------~~~g~~~~~vr~lf~~A~~~~P~ILfID 268 (613)
..++++||+|+|||++.+++.+.... .++.+. ..++.. .-+|.......+.++.+....|.+|++|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vg 202 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIG 202 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEe
Confidence 46899999999999999999986642 233221 111110 0112212234556666777889999999
Q ss_pred CCC
Q 007190 269 EID 271 (613)
Q Consensus 269 EiD 271 (613)
|+-
T Consensus 203 Eir 205 (343)
T TIGR01420 203 EMR 205 (343)
T ss_pred CCC
Confidence 984
No 364
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.99 E-value=0.008 Score=65.80 Aligned_cols=112 Identities=15% Similarity=0.264 Sum_probs=59.6
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc----CCCeeEeecchhhhh-------hh---hh---hHHHHHHHHHHHHcCCCe
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGSEFEEM-------FV---GV---GARRVRSLFQAAKKKAPC 263 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~----~~pfi~is~s~~~~~-------~~---g~---~~~~vr~lf~~A~~~~P~ 263 (613)
.+.-++|+||+|+|||+++..+|... |..+..+++..+... |. +. ....+..+...++.....
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D 301 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSE 301 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCC
Confidence 45668999999999999999999754 344444444433211 10 11 112233444444444557
Q ss_pred EEEEcCCCccccCCccCCcccHHHHHHHHHHhhcc---ccCCceEEEeecCCCCCCChhh
Q 007190 264 IIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF---EQNEGIILMAATNLPDILDPAL 320 (613)
Q Consensus 264 ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~---~~~~~ViVIaaTN~p~~Ld~aL 320 (613)
+|+||=..... .....+..|...++.+ .+...++|+.+|...+.+....
T Consensus 302 ~VLIDTaGr~~--------rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~ 353 (432)
T PRK12724 302 LILIDTAGYSH--------RNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVL 353 (432)
T ss_pred EEEEeCCCCCc--------cCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHH
Confidence 88887532221 1223344444433322 1234567777776665554444
No 365
>PRK13695 putative NTPase; Provisional
Probab=96.98 E-value=0.0064 Score=58.50 Aligned_cols=23 Identities=48% Similarity=0.567 Sum_probs=20.5
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~ 226 (613)
.++|+|+||+|||++++.+++++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999988764
No 366
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.97 E-value=0.0041 Score=63.09 Aligned_cols=21 Identities=33% Similarity=0.321 Sum_probs=18.8
Q ss_pred EEEEccCCChHHHHHHHHHHh
Q 007190 205 ILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 205 vLL~GPpGTGKT~LAralA~e 225 (613)
-+|+||||+|||+|+..+|-.
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 589999999999999999863
No 367
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.97 E-value=0.00065 Score=63.47 Aligned_cols=33 Identities=36% Similarity=0.787 Sum_probs=27.2
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCeeEeecchhh
Q 007190 205 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 239 (613)
Q Consensus 205 vLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~ 239 (613)
++|+|+||+|||++|+.++...+.+++ +...+.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i--~~D~~~ 34 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI--DGDDLH 34 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE--eCcccc
Confidence 689999999999999999999887665 444443
No 368
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.96 E-value=0.004 Score=62.16 Aligned_cols=35 Identities=34% Similarity=0.574 Sum_probs=28.4
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhh
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 240 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~ 240 (613)
-|+++||||+|||++++.+|...+++.+. ..++..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is--~~dl~r 36 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIS--TGDMLR 36 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE--CCccHH
Confidence 38999999999999999999999976655 444433
No 369
>PRK06547 hypothetical protein; Provisional
Probab=96.96 E-value=0.0008 Score=65.13 Aligned_cols=35 Identities=31% Similarity=0.407 Sum_probs=30.3
Q ss_pred CCCceEEEEccCCChHHHHHHHHHHhcCCCeeEee
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 234 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is 234 (613)
..|.-|+++|++|+|||++|+.+++..+++++..+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 45668999999999999999999999998877643
No 370
>PHA02774 E1; Provisional
Probab=96.96 E-value=0.0022 Score=72.29 Aligned_cols=33 Identities=15% Similarity=0.333 Sum_probs=27.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCee-Eeec
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAGVPFF-YRAG 235 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~~pfi-~is~ 235 (613)
++++|+||||||||++|-+|++.++...+ .+|.
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 48999999999999999999999865443 3553
No 371
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.95 E-value=0.00069 Score=65.86 Aligned_cols=34 Identities=35% Similarity=0.636 Sum_probs=28.1
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhh
Q 007190 205 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 240 (613)
Q Consensus 205 vLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~ 240 (613)
|+|+||||+|||++|+.||.+.+.+++ +..++..
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i--~~~~l~~ 35 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHI--STGDLLR 35 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEE--ECcHHHH
Confidence 799999999999999999999887665 4455543
No 372
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.94 E-value=0.006 Score=61.24 Aligned_cols=38 Identities=34% Similarity=0.452 Sum_probs=28.0
Q ss_pred CCCCCceEEEEccCCChHHHHHHHHHHh---cCCCeeEeec
Q 007190 198 GGKLPKGILLTGAPGTGKTLLAKAIAGE---AGVPFFYRAG 235 (613)
Q Consensus 198 g~~~p~gvLL~GPpGTGKT~LAralA~e---~~~pfi~is~ 235 (613)
|......++++||||+|||+++..++.+ .+.+.++++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 3344567999999999999999987643 2556666664
No 373
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.94 E-value=0.0016 Score=69.56 Aligned_cols=70 Identities=23% Similarity=0.347 Sum_probs=45.5
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCC--CeeEee-cchhh--------hhh-----hhhhHHHHHHHHHHHHcCCCeEE
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEAGV--PFFYRA-GSEFE--------EMF-----VGVGARRVRSLFQAAKKKAPCII 265 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~~~--pfi~is-~s~~~--------~~~-----~g~~~~~vr~lf~~A~~~~P~IL 265 (613)
.++++++||+|+|||++++++...... .++.+. ..++. ..+ .+...-...++++.+....|..|
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~I 239 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRI 239 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeE
Confidence 358999999999999999999987642 222221 11110 000 01112245678888888889999
Q ss_pred EEcCCC
Q 007190 266 FIDEID 271 (613)
Q Consensus 266 fIDEiD 271 (613)
++.|+-
T Consensus 240 ivGEiR 245 (332)
T PRK13900 240 IVGELR 245 (332)
T ss_pred EEEecC
Confidence 999985
No 374
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.94 E-value=0.0034 Score=61.00 Aligned_cols=73 Identities=25% Similarity=0.339 Sum_probs=41.7
Q ss_pred eEEEEccCCChHHHHHHHHHHhc-------------CCCeeEeecchh----hhhh---------------hh-------
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEA-------------GVPFFYRAGSEF----EEMF---------------VG------- 244 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~-------------~~pfi~is~s~~----~~~~---------------~g------- 244 (613)
-++++||||+|||+++..++... +.++++++...- ...+ ..
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~ 113 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWGCI 113 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-EE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeeccccccc
Confidence 38999999999999999997744 235666654322 1111 00
Q ss_pred ----------hhHHHHHHHHHHHHc-CCCeEEEEcCCCccccC
Q 007190 245 ----------VGARRVRSLFQAAKK-KAPCIIFIDEIDAVGST 276 (613)
Q Consensus 245 ----------~~~~~vr~lf~~A~~-~~P~ILfIDEiD~l~~~ 276 (613)
.....+..+.+.+.. ..|.+|+||-+..+...
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 114 RLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp ---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred eeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 001223455566666 57899999999999765
No 375
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.93 E-value=0.0031 Score=66.93 Aligned_cols=113 Identities=13% Similarity=0.116 Sum_probs=62.7
Q ss_pred CCCCceEEEEccCCChHHHHHHHHHHhc---------CCCeeEeecchh-h-hhh------hhhh---------------
Q 007190 199 GKLPKGILLTGAPGTGKTLLAKAIAGEA---------GVPFFYRAGSEF-E-EMF------VGVG--------------- 246 (613)
Q Consensus 199 ~~~p~gvLL~GPpGTGKT~LAralA~e~---------~~pfi~is~s~~-~-~~~------~g~~--------------- 246 (613)
.....-++++||||+|||.++-.+|-.+ +...++++..+- . +.. .|..
T Consensus 99 i~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~~~~~~l~~i~~~~~~~ 178 (317)
T PRK04301 99 IETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLDPDEVLDNIHVARAYN 178 (317)
T ss_pred ccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCCChHhhhccEEEEeCCC
Confidence 3445568899999999999999998653 336777776541 1 000 0000
Q ss_pred ----HHHHHHHHHHHHc-CCCeEEEEcCCCccccCCccCCc---ccHHHHHHHHHHhhccccCCceEEEeecC
Q 007190 247 ----ARRVRSLFQAAKK-KAPCIIFIDEIDAVGSTRKQWEG---HTKKTLHQLLVEMDGFEQNEGIILMAATN 311 (613)
Q Consensus 247 ----~~~vr~lf~~A~~-~~P~ILfIDEiD~l~~~r~~~~~---~~~~~l~~LL~~ldg~~~~~~ViVIaaTN 311 (613)
...+..+...... ..+.+|+||=|-++....-...+ ...+.+.+++..|..+....++.+|.++.
T Consensus 179 ~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~vavl~tnq 251 (317)
T PRK04301 179 SDHQMLLAEKAEELIKEGENIKLVIVDSLTAHFRAEYVGRGNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 251 (317)
T ss_pred HHHHHHHHHHHHHHHhccCceeEEEEECchHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEece
Confidence 0112222222333 56779999999987543111111 11334556665555554455666665543
No 376
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.92 E-value=0.0034 Score=59.92 Aligned_cols=104 Identities=17% Similarity=0.180 Sum_probs=57.7
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcCC--CeeEeecchhh--------hhhhh-----hhHHHHHHHHHHHHcCCCeEE
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEAGV--PFFYRAGSEFE--------EMFVG-----VGARRVRSLFQAAKKKAPCII 265 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~~~--pfi~is~s~~~--------~~~~g-----~~~~~vr~lf~~A~~~~P~IL 265 (613)
+...+.|.||+|+|||+|.+.+++.... --+.+++.++. ...++ .+..+.+-.+..|-...|.++
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLL 104 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEE
Confidence 3456899999999999999999986421 01222222211 00010 012234445666666789999
Q ss_pred EEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCC
Q 007190 266 FIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD 314 (613)
Q Consensus 266 fIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~ 314 (613)
++||--.-. +....+.+..++.++. .+ +..+|.+|..++
T Consensus 105 llDEP~~~L------D~~~~~~l~~~l~~~~---~~-~~tiii~sh~~~ 143 (163)
T cd03216 105 ILDEPTAAL------TPAEVERLFKVIRRLR---AQ-GVAVIFISHRLD 143 (163)
T ss_pred EEECCCcCC------CHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHH
Confidence 999965432 2223445555555442 22 334455566543
No 377
>PRK10867 signal recognition particle protein; Provisional
Probab=96.91 E-value=0.015 Score=64.18 Aligned_cols=75 Identities=20% Similarity=0.290 Sum_probs=48.1
Q ss_pred CCCCceEEEEccCCChHHHHHHHHHHhc----CCCeeEeecchhhhhh----------hh----------hhHHHHHHHH
Q 007190 199 GKLPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGSEFEEMF----------VG----------VGARRVRSLF 254 (613)
Q Consensus 199 ~~~p~gvLL~GPpGTGKT~LAralA~e~----~~pfi~is~s~~~~~~----------~g----------~~~~~vr~lf 254 (613)
...|.-++++||+|+|||+++..+|..+ |..+..+++..+.... .| ......++..
T Consensus 97 ~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~ 176 (433)
T PRK10867 97 AKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAAL 176 (433)
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHH
Confidence 4568889999999999999877777643 6666667665442210 00 1123334455
Q ss_pred HHHHcCCCeEEEEcCCCcc
Q 007190 255 QAAKKKAPCIIFIDEIDAV 273 (613)
Q Consensus 255 ~~A~~~~P~ILfIDEiD~l 273 (613)
..++.....+|+||=...+
T Consensus 177 ~~a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 177 EEAKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHHHhcCCCEEEEeCCCCc
Confidence 5666666678998876554
No 378
>PRK04328 hypothetical protein; Provisional
Probab=96.90 E-value=0.0074 Score=61.84 Aligned_cols=37 Identities=32% Similarity=0.457 Sum_probs=27.8
Q ss_pred CCCCceEEEEccCCChHHHHHHHHHHh---cCCCeeEeec
Q 007190 199 GKLPKGILLTGAPGTGKTLLAKAIAGE---AGVPFFYRAG 235 (613)
Q Consensus 199 ~~~p~gvLL~GPpGTGKT~LAralA~e---~~~pfi~is~ 235 (613)
......+|++||||||||+|+..++.+ .|-+.++++.
T Consensus 20 ip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 20 IPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 334456899999999999999887653 3667777765
No 379
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.89 E-value=0.001 Score=67.30 Aligned_cols=33 Identities=30% Similarity=0.470 Sum_probs=28.8
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcCCCeeEe
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 233 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~i 233 (613)
.|..++|.||||+|||++|+.+|+..+++++++
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~ 37 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINM 37 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 345699999999999999999999999877664
No 380
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.89 E-value=0.0015 Score=64.71 Aligned_cols=134 Identities=22% Similarity=0.254 Sum_probs=64.2
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhh-hhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCc
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE-MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG 282 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~-~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~ 282 (613)
-++|+||+|||||.+|-++|++.|.|++..+.-.+-. .-+|.+.....++ +..+ =+++||-..- .+.-
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el-----~~~~-RiyL~~r~l~-----~G~i 71 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSEL-----KGTR-RIYLDDRPLS-----DGII 71 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGG-----TT-E-EEES----GG-----G-S-
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHH-----cccc-eeeecccccc-----CCCc
Confidence 4789999999999999999999999999987654432 2233221111110 1112 3777764322 1122
Q ss_pred ccHHHHHHHHHHhhccccCCceEEEeecCCCCCCChhhcC---CCccce-EEEccCCCHhhHHHHHHHHhcc
Q 007190 283 HTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTR---PGRFDR-HIVVPNPDVRGRQEILELYLQD 350 (613)
Q Consensus 283 ~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlR---pgRFd~-~I~v~~Pd~~~R~~IL~~~l~~ 350 (613)
...+....|+..++......++|+=|-+.. .|..-..+ .-.|.. ...++.||.+.-..-.+...++
T Consensus 72 ~a~ea~~~Li~~v~~~~~~~~~IlEGGSIS--Ll~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~ 141 (233)
T PF01745_consen 72 NAEEAHERLISEVNSYSAHGGLILEGGSIS--LLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVRQ 141 (233)
T ss_dssp -HHHHHHHHHHHHHTTTTSSEEEEEE--HH--HHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccccCceEEeCchHH--HHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHHH
Confidence 345677778888888877666666554431 11100111 013444 4466888887665544444433
No 381
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.88 E-value=0.00074 Score=64.06 Aligned_cols=32 Identities=34% Similarity=0.707 Sum_probs=26.6
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCeeEeecchh
Q 007190 205 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 238 (613)
Q Consensus 205 vLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~ 238 (613)
++|+||||+|||++|+.+++.++.+++ +..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v--~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI--EGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE--eCccc
Confidence 478999999999999999999987665 44444
No 382
>PRK14530 adenylate kinase; Provisional
Probab=96.88 E-value=0.0009 Score=66.79 Aligned_cols=30 Identities=43% Similarity=0.593 Sum_probs=26.8
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeEe
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFYR 233 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~i 233 (613)
.++|.||||+|||++++.||+..+.+++.+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 599999999999999999999999776643
No 383
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.88 E-value=0.0013 Score=64.12 Aligned_cols=33 Identities=33% Similarity=0.520 Sum_probs=26.8
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeEeecchh
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 238 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~ 238 (613)
.++|.||||+||||+|+.||+. .++.+++-.++
T Consensus 2 riiilG~pGaGK~T~A~~La~~--~~i~hlstgd~ 34 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK--LGLPHLDTGDI 34 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH--hCCcEEcHhHH
Confidence 4899999999999999999999 45556664444
No 384
>PRK08233 hypothetical protein; Provisional
Probab=96.88 E-value=0.0038 Score=59.91 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=26.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC-CCeeEeec
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAG-VPFFYRAG 235 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~-~pfi~is~ 235 (613)
.-|.+.|+||+||||+|+.|+..++ .+++..+.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 4578899999999999999999885 44554443
No 385
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.86 E-value=0.0036 Score=66.07 Aligned_cols=112 Identities=14% Similarity=0.143 Sum_probs=61.3
Q ss_pred CCCCceEEEEccCCChHHHHHHHHHHhc---------CCCeeEeecch-hhh-hh------hhhhH--------------
Q 007190 199 GKLPKGILLTGAPGTGKTLLAKAIAGEA---------GVPFFYRAGSE-FEE-MF------VGVGA-------------- 247 (613)
Q Consensus 199 ~~~p~gvLL~GPpGTGKT~LAralA~e~---------~~pfi~is~s~-~~~-~~------~g~~~-------------- 247 (613)
.....-++++||||+|||+++-.+|-.+ +.+.++++..+ |.. .+ .|...
T Consensus 92 i~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~gl~~~~~~~~i~i~~~~~ 171 (310)
T TIGR02236 92 IETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARGLDPDEVLKNIYVARAYN 171 (310)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhceEEEecCC
Confidence 3444557899999999999999998763 23678887655 111 00 01000
Q ss_pred -----HHHHHHHHHHHcC--CCeEEEEcCCCccccCCccCCc---ccHHHHHHHHHHhhccccCCceEEEeec
Q 007190 248 -----RRVRSLFQAAKKK--APCIIFIDEIDAVGSTRKQWEG---HTKKTLHQLLVEMDGFEQNEGIILMAAT 310 (613)
Q Consensus 248 -----~~vr~lf~~A~~~--~P~ILfIDEiD~l~~~r~~~~~---~~~~~l~~LL~~ldg~~~~~~ViVIaaT 310 (613)
..+..+....... .+++|+||-+-++....-...+ ...+.+++++..|..+....++.|+.+.
T Consensus 172 ~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~~r~e~~~~~~~~~r~~~l~~~~~~L~~~a~~~~~~v~~tn 244 (310)
T TIGR02236 172 SNHQMLLVEKAEDLIKELNNPVKLLIVDSLTSHFRAEYVGRGALAERQQKLNKHLHDLLRLADLYNAAVVVTN 244 (310)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEEecchHhhhHhhcCchhHHHHHHHHHHHHHHHHHHHHHhCcEEEEec
Confidence 0122333333333 3679999988877432111111 1123455555555555445566666553
No 386
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.86 E-value=0.0011 Score=63.50 Aligned_cols=31 Identities=35% Similarity=0.527 Sum_probs=28.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCeeEe
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 233 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~~pfi~i 233 (613)
+.++|+|+||+|||++++.+|+.+|.||+..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~ 33 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDT 33 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 3589999999999999999999999998854
No 387
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.85 E-value=0.0098 Score=59.04 Aligned_cols=123 Identities=24% Similarity=0.350 Sum_probs=75.6
Q ss_pred hhhhhcCCCCCce--EEEEccCCChHHHHHHHHHHhc---CCCeeEeecch----hhh----------------------
Q 007190 192 SKFTRLGGKLPKG--ILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSE----FEE---------------------- 240 (613)
Q Consensus 192 ~~~~~lg~~~p~g--vLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~----~~~---------------------- 240 (613)
+.-+++|+-.|.| +++.|+.|||||.|.+.++--+ +....+++... |..
T Consensus 16 elDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~ 95 (235)
T COG2874 16 ELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFP 95 (235)
T ss_pred HHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEE
Confidence 3445667766654 7889999999999999997522 33333332111 000
Q ss_pred -------hhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCC
Q 007190 241 -------MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP 313 (613)
Q Consensus 241 -------~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p 313 (613)
.-.....+.+..+.+..+.....+|+||-+..+.... ..+.+.+++..+..+.....+|++ |-+|
T Consensus 96 ~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~------~~~~vl~fm~~~r~l~d~gKvIil--Tvhp 167 (235)
T COG2874 96 VNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD------SEDAVLNFMTFLRKLSDLGKVIIL--TVHP 167 (235)
T ss_pred ecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc------cHHHHHHHHHHHHHHHhCCCEEEE--EeCh
Confidence 0011122344455555555566799999999885432 355667777777777666666665 4467
Q ss_pred CCCChhhcC
Q 007190 314 DILDPALTR 322 (613)
Q Consensus 314 ~~Ld~aLlR 322 (613)
+.++.+++.
T Consensus 168 ~~l~e~~~~ 176 (235)
T COG2874 168 SALDEDVLT 176 (235)
T ss_pred hhcCHHHHH
Confidence 888887765
No 388
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.84 E-value=0.0032 Score=66.62 Aligned_cols=35 Identities=34% Similarity=0.551 Sum_probs=31.1
Q ss_pred CCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEe
Q 007190 199 GKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 233 (613)
Q Consensus 199 ~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~i 233 (613)
..++..|.|+|+||+|||++++.+|..+|.||+.+
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~ 164 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVEL 164 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeH
Confidence 34566899999999999999999999999999953
No 389
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.84 E-value=0.0012 Score=63.88 Aligned_cols=34 Identities=24% Similarity=0.530 Sum_probs=30.3
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCeeEeec
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAG 235 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~ 235 (613)
++.|+|.||+|+|||++++.+|+.++.+++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 3479999999999999999999999999887654
No 390
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.84 E-value=0.017 Score=58.81 Aligned_cols=134 Identities=16% Similarity=0.245 Sum_probs=74.7
Q ss_pred CCCceEEEEccCCChHHHHHHHHHHhcCC--CeeEeecchhhh---hh-----hhh------hH-------HHHHHHHHH
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAGEAGV--PFFYRAGSEFEE---MF-----VGV------GA-------RRVRSLFQA 256 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~e~~~--pfi~is~s~~~~---~~-----~g~------~~-------~~vr~lf~~ 256 (613)
..|-.+.+.|++|||||++++.+.....- +.+.+-+..... .| +.. .. ..+.+....
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k 90 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKK 90 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhh
Confidence 34557999999999999999999876532 222221111100 01 000 00 111122221
Q ss_pred HHc---CCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEcc
Q 007190 257 AKK---KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVP 333 (613)
Q Consensus 257 A~~---~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~ 333 (613)
... ..+++|++|++..- ....+.+.+++.. ...-++-+|-.+.....||+.++. -.+..+.++
T Consensus 91 ~~~~k~~~~~LiIlDD~~~~--------~~k~~~l~~~~~~----gRH~~is~i~l~Q~~~~lp~~iR~--n~~y~i~~~ 156 (241)
T PF04665_consen 91 SPQKKNNPRFLIILDDLGDK--------KLKSKILRQFFNN----GRHYNISIIFLSQSYFHLPPNIRS--NIDYFIIFN 156 (241)
T ss_pred hcccCCCCCeEEEEeCCCCc--------hhhhHHHHHHHhc----ccccceEEEEEeeecccCCHHHhh--cceEEEEec
Confidence 111 23689999997421 0123345555532 234457777788888899999876 577777665
Q ss_pred CCCHhhHHHHHHHHh
Q 007190 334 NPDVRGRQEILELYL 348 (613)
Q Consensus 334 ~Pd~~~R~~IL~~~l 348 (613)
-+..+...|++.+.
T Consensus 157 -~s~~dl~~i~~~~~ 170 (241)
T PF04665_consen 157 -NSKRDLENIYRNMN 170 (241)
T ss_pred -CcHHHHHHHHHhcc
Confidence 45666666666543
No 391
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.83 E-value=0.00092 Score=63.39 Aligned_cols=28 Identities=36% Similarity=0.686 Sum_probs=26.3
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCeeE
Q 007190 205 ILLTGAPGTGKTLLAKAIAGEAGVPFFY 232 (613)
Q Consensus 205 vLL~GPpGTGKT~LAralA~e~~~pfi~ 232 (613)
+-+.|||||||||+|+.+|+.+|.++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 6789999999999999999999999986
No 392
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.83 E-value=0.0054 Score=59.63 Aligned_cols=69 Identities=25% Similarity=0.160 Sum_probs=41.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCC--eeEeecchh----hhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAGVP--FFYRAGSEF----EEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDA 272 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~~p--fi~is~s~~----~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~ 272 (613)
.-+.|.||.|+|||+|++.+++..... -+.+++..+ ....... ..+.+-.+..+-...|.++++||--+
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSg-Gq~qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSG-GELQRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCH-HHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 458899999999999999999864210 122222111 0000111 12334445555566789999999754
No 393
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.82 E-value=0.013 Score=56.10 Aligned_cols=35 Identities=34% Similarity=0.396 Sum_probs=27.8
Q ss_pred eEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchh
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEF 238 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~ 238 (613)
-++++||||+|||++++.++..+ +..+..+++..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 37899999999999999998765 566777776543
No 394
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.82 E-value=0.0033 Score=65.69 Aligned_cols=38 Identities=26% Similarity=0.377 Sum_probs=29.5
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhh
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 240 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~ 240 (613)
++-++++||||||||++|+.++.+.. .++.++..++..
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~r~ 39 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDLRQ 39 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHHHH
Confidence 45689999999999999999999983 345555555543
No 395
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.82 E-value=0.0021 Score=67.92 Aligned_cols=71 Identities=24% Similarity=0.391 Sum_probs=45.7
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcCC--CeeEee-cchhh-------hhh-----hhhhHHHHHHHHHHHHcCCCeEE
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEAGV--PFFYRA-GSEFE-------EMF-----VGVGARRVRSLFQAAKKKAPCII 265 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~~~--pfi~is-~s~~~-------~~~-----~g~~~~~vr~lf~~A~~~~P~IL 265 (613)
...+++++||+|+|||++++++++.... ..+.+. ..++. ... .+...-...+++..+....|.+|
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~i 222 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDRI 222 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCeE
Confidence 3458999999999999999999987632 122221 11110 000 01112245677777888899999
Q ss_pred EEcCCC
Q 007190 266 FIDEID 271 (613)
Q Consensus 266 fIDEiD 271 (613)
++||+-
T Consensus 223 i~gE~r 228 (308)
T TIGR02788 223 ILGELR 228 (308)
T ss_pred EEeccC
Confidence 999985
No 396
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=96.82 E-value=0.022 Score=61.46 Aligned_cols=115 Identities=17% Similarity=0.217 Sum_probs=60.6
Q ss_pred CeEEEEcCCCcccc----CCccCC---cccHHHHHHHHHHhhccccCCceEEEeec--CCCCCCChh---------hcCC
Q 007190 262 PCIIFIDEIDAVGS----TRKQWE---GHTKKTLHQLLVEMDGFEQNEGIILMAAT--NLPDILDPA---------LTRP 323 (613)
Q Consensus 262 P~ILfIDEiD~l~~----~r~~~~---~~~~~~l~~LL~~ldg~~~~~~ViVIaaT--N~p~~Ld~a---------LlRp 323 (613)
|-++.||.+.++.. ++.... ..+-..++.+...+.+ .-..+.++.++. .-|...++- ++-+
T Consensus 316 kVLvaID~~n~l~~~T~~k~~~~~~v~P~dl~li~~~~~~i~n-dwt~g~vi~a~s~~~~~~a~~h~gv~~y~pr~llg~ 394 (461)
T KOG3928|consen 316 KVLVAIDNFNSLFTVTAYKSEDNKPVTPLDLTLIHLLRDIISN-DWTFGSVIMAISGVTTPSAFGHLGVAPYVPRKLLGE 394 (461)
T ss_pred cEEEEEcCcchheeeeeeeccccCcCCchhhhHHHHHHHHHhc-ccccceEEEEecccccchhccccccccCCchHhcCc
Confidence 56888999999976 222211 1222334444444443 223344555444 222211110 1111
Q ss_pred Cccc-----eEEEccCCCHhhHHHHHHHHhccCCCCC----hhcHHHHHhcCCCCCHHHHHHHH
Q 007190 324 GRFD-----RHIVVPNPDVRGRQEILELYLQDKPLAD----DVDVKAIARGTPGFNGADLANLV 378 (613)
Q Consensus 324 gRFd-----~~I~v~~Pd~~~R~~IL~~~l~~~~l~~----d~dl~~la~~t~G~sgadL~~lv 378 (613)
--|| ..|+++.++.+|-.+++..|++..-+.. +.....+--++ +.+|+-++.+|
T Consensus 395 egfe~lqpf~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLS-ngNP~l~~~lc 457 (461)
T KOG3928|consen 395 EGFEALQPFVPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLS-NGNPSLMERLC 457 (461)
T ss_pred cchhhccCcCccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhc-CCCHHHHHHHH
Confidence 1122 2578889999999999999987643332 22344444444 45777776665
No 397
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.81 E-value=0.0013 Score=65.34 Aligned_cols=23 Identities=48% Similarity=0.590 Sum_probs=18.8
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~ 226 (613)
-+.+.||.|||||+||-+.|-+.
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 58999999999999999998754
No 398
>PRK13764 ATPase; Provisional
Probab=96.81 E-value=0.0017 Score=74.22 Aligned_cols=70 Identities=21% Similarity=0.270 Sum_probs=41.3
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCC---CeeEe-ecchh-----hhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCc
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEAGV---PFFYR-AGSEF-----EEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDA 272 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~~~---pfi~i-s~s~~-----~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~ 272 (613)
.+++|++||||+||||++++++..+.. .+..+ +..++ ...|... ..........+....|.+|++||+-.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~~-~~~~~~~~~~lLR~rPD~IivGEiRd 335 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSKL-EGSMEETADILLLVRPDYTIYDEMRK 335 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEeec-cccHHHHHHHHHhhCCCEEEECCCCC
Confidence 458999999999999999999987642 22222 11111 1111100 00112222333456799999999853
No 399
>PRK06696 uridine kinase; Validated
Probab=96.81 E-value=0.0024 Score=64.20 Aligned_cols=39 Identities=28% Similarity=0.480 Sum_probs=33.5
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhh
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFE 239 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~ 239 (613)
.|.-|.+.|+||+||||+|+.|+..+ |.+++.++..+|.
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 46689999999999999999999988 6788887777764
No 400
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.80 E-value=0.0047 Score=66.50 Aligned_cols=23 Identities=57% Similarity=0.741 Sum_probs=21.4
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~ 226 (613)
-+++.|.||||||.+|-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 401
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.79 E-value=0.0015 Score=69.38 Aligned_cols=70 Identities=21% Similarity=0.324 Sum_probs=45.1
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc-----CCCeeEee-cchhhhh------hhhhhHHHHHHHHHHHHcCCCeEEEEcC
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRA-GSEFEEM------FVGVGARRVRSLFQAAKKKAPCIIFIDE 269 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~-----~~pfi~is-~s~~~~~------~~g~~~~~vr~lf~~A~~~~P~ILfIDE 269 (613)
.+++|++|++|+|||++++++.... +..++.+. ..++.-. +.....-...++++.+....|..|++.|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGE 223 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGE 223 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEee
Confidence 3589999999999999999999875 22233322 1121100 0011112356777778888899999988
Q ss_pred CC
Q 007190 270 ID 271 (613)
Q Consensus 270 iD 271 (613)
+-
T Consensus 224 iR 225 (323)
T PRK13833 224 VR 225 (323)
T ss_pred cC
Confidence 73
No 402
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.78 E-value=0.0056 Score=68.78 Aligned_cols=74 Identities=27% Similarity=0.230 Sum_probs=51.7
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhhhhhh----------------------------hHHH
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGV----------------------------GARR 249 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~~~g~----------------------------~~~~ 249 (613)
....+|+.||||||||+|+-.++.+. |-+.++++..+-.+.+... ....
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~~ 341 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLEDH 341 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChHHH
Confidence 33558999999999999999998754 6677888765432221100 0234
Q ss_pred HHHHHHHHHcCCCeEEEEcCCCccc
Q 007190 250 VRSLFQAAKKKAPCIIFIDEIDAVG 274 (613)
Q Consensus 250 vr~lf~~A~~~~P~ILfIDEiD~l~ 274 (613)
+..+.+......|.+|+||-+..+.
T Consensus 342 ~~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 342 LQIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred HHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 5556666777788999999999874
No 403
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.78 E-value=0.005 Score=65.26 Aligned_cols=109 Identities=17% Similarity=0.180 Sum_probs=60.7
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc---------CCCeeEeecch-hh-hhh------hhh----------------h-
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEA---------GVPFFYRAGSE-FE-EMF------VGV----------------G- 246 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~---------~~pfi~is~s~-~~-~~~------~g~----------------~- 246 (613)
...-+.++||||+|||.|+..+|-.+ +...+|++... |. +.. .+. .
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~~~e 174 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAYTSE 174 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCCCHH
Confidence 33457899999999999998877422 34677777544 11 100 000 0
Q ss_pred --HHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCc---ccHHHHHHHHHHhhccccCCceEEEee
Q 007190 247 --ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG---HTKKTLHQLLVEMDGFEQNEGIILMAA 309 (613)
Q Consensus 247 --~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~---~~~~~l~~LL~~ldg~~~~~~ViVIaa 309 (613)
...+..+-.......+.+|+||-+-++....-...+ ...+.+++++..|..+....++.|+.+
T Consensus 175 ~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~~g~~~~r~~~l~~~~~~L~~la~~~~vavvit 242 (313)
T TIGR02238 175 HQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSGRGELSERQQKLAQMLSRLNKISEEFNVAVFVT 242 (313)
T ss_pred HHHHHHHHHHHHhhccCCCEEEEEcchHhhhhhccCccchHHHHHHHHHHHHHHHHHHHHcCcEEEEE
Confidence 011222222233456889999999988653211111 123346666666665555556666554
No 404
>PRK14528 adenylate kinase; Provisional
Probab=96.76 E-value=0.0013 Score=64.29 Aligned_cols=30 Identities=30% Similarity=0.556 Sum_probs=27.0
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeEe
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFYR 233 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~i 233 (613)
.+++.||||+|||++++.++...+.+.+.+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 589999999999999999999999877653
No 405
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.76 E-value=0.0054 Score=64.08 Aligned_cols=38 Identities=24% Similarity=0.256 Sum_probs=29.6
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc----C-CCeeEeecchh
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEA----G-VPFFYRAGSEF 238 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~----~-~pfi~is~s~~ 238 (613)
.++.++|+||+|+|||+++..+|..+ + ..+..++...+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~ 235 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY 235 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence 46689999999999999999998755 3 56666666543
No 406
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.76 E-value=0.011 Score=61.33 Aligned_cols=91 Identities=20% Similarity=0.261 Sum_probs=62.1
Q ss_pred ccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhhhhhhhHHH
Q 007190 170 DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARR 249 (613)
Q Consensus 170 dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~~~g~~~~~ 249 (613)
+++=.+++.+-+.++.+-|..|.- ++||.|.+|+||++++|-.|.-++..++.+..+.-.. ..+....
T Consensus 9 ~lVlf~~ai~hi~ri~RvL~~~~G----------h~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~--~~~f~~d 76 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRVLSQPRG----------HALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYS--IKDFKED 76 (268)
T ss_dssp -----HHHHHHHHHHHHHHCSTTE----------EEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTH--HHHHHHH
T ss_pred ceeeHHHHHHHHHHHHHHHcCCCC----------CeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcC--HHHHHHH
Confidence 556778888888888887777643 7999999999999999999999999998877543111 1223455
Q ss_pred HHHHHHHHH-cCCCeEEEEcCCCc
Q 007190 250 VRSLFQAAK-KKAPCIIFIDEIDA 272 (613)
Q Consensus 250 vr~lf~~A~-~~~P~ILfIDEiD~ 272 (613)
++.++..|- ++.|.+++|+|-+-
T Consensus 77 Lk~~~~~ag~~~~~~vfll~d~qi 100 (268)
T PF12780_consen 77 LKKALQKAGIKGKPTVFLLTDSQI 100 (268)
T ss_dssp HHHHHHHHHCS-S-EEEEEECCCS
T ss_pred HHHHHHHHhccCCCeEEEecCccc
Confidence 667666654 55688888888654
No 407
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.75 E-value=0.0086 Score=56.81 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=22.5
Q ss_pred ceEEEEccCCChHHH-HHHHHHHhcC----CCeeEeec
Q 007190 203 KGILLTGAPGTGKTL-LAKAIAGEAG----VPFFYRAG 235 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~-LAralA~e~~----~pfi~is~ 235 (613)
+.+++.||+|||||. ++..+..... .+++.+..
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p 62 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVP 62 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeC
Confidence 479999999999999 5555554432 33555544
No 408
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.75 E-value=0.0035 Score=51.06 Aligned_cols=30 Identities=33% Similarity=0.525 Sum_probs=23.7
Q ss_pred EEEEccCCChHHHHHHHHHHhc-CCCeeEee
Q 007190 205 ILLTGAPGTGKTLLAKAIAGEA-GVPFFYRA 234 (613)
Q Consensus 205 vLL~GPpGTGKT~LAralA~e~-~~pfi~is 234 (613)
+.+.|+||+|||+++++++..+ +.++..++
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~ 32 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLD 32 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEe
Confidence 6789999999999999999985 23444443
No 409
>PRK14527 adenylate kinase; Provisional
Probab=96.74 E-value=0.0014 Score=64.15 Aligned_cols=33 Identities=30% Similarity=0.459 Sum_probs=28.3
Q ss_pred CCCceEEEEccCCChHHHHHHHHHHhcCCCeeE
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFY 232 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~ 232 (613)
+.|+-++++||||+|||++|+.+|.+.+.+.+.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 346679999999999999999999999876554
No 410
>PRK04040 adenylate kinase; Provisional
Probab=96.74 E-value=0.0014 Score=64.28 Aligned_cols=30 Identities=27% Similarity=0.404 Sum_probs=26.3
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc--CCCee
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEA--GVPFF 231 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~--~~pfi 231 (613)
|+-++++|+||+|||++++.++.++ +.+++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 5679999999999999999999998 55554
No 411
>PRK13808 adenylate kinase; Provisional
Probab=96.73 E-value=0.011 Score=62.90 Aligned_cols=34 Identities=24% Similarity=0.478 Sum_probs=27.9
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhh
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 239 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~ 239 (613)
-|+|.||||+|||++++.|+..++++.+ +..+++
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~i--s~gdlL 35 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQL--STGDML 35 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee--cccHHH
Confidence 3899999999999999999999987555 445544
No 412
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.72 E-value=0.014 Score=64.44 Aligned_cols=37 Identities=19% Similarity=0.171 Sum_probs=28.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc-----CCCeeEeecchh
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAGSEF 238 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~-----~~pfi~is~s~~ 238 (613)
++.++|+||+|+|||+++..+|..+ +..+..+++..+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~ 262 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTY 262 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 4579999999999999998887643 345666666554
No 413
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.72 E-value=0.0079 Score=58.66 Aligned_cols=19 Identities=21% Similarity=0.483 Sum_probs=18.2
Q ss_pred EEEEccCCChHHHHHHHHH
Q 007190 205 ILLTGAPGTGKTLLAKAIA 223 (613)
Q Consensus 205 vLL~GPpGTGKT~LAralA 223 (613)
++|+||.|.|||++.|.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999998
No 414
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.72 E-value=0.0047 Score=63.90 Aligned_cols=94 Identities=20% Similarity=0.222 Sum_probs=56.3
Q ss_pred CCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcC---CCeeEee-cchhhhh
Q 007190 166 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG---VPFFYRA-GSEFEEM 241 (613)
Q Consensus 166 ~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~---~pfi~is-~s~~~~~ 241 (613)
.+++++.-.++..+.|.+++. .+ -..++++||+|+|||++++++..... ..++.+. ..++.-.
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~---~~----------~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~ 123 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLE---KP----------HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIP 123 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHh---cC----------CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCC
Confidence 467777655555555544442 11 12589999999999999999987663 2244332 1121100
Q ss_pred -----hhh-hhHHHHHHHHHHHHcCCCeEEEEcCCCc
Q 007190 242 -----FVG-VGARRVRSLFQAAKKKAPCIIFIDEIDA 272 (613)
Q Consensus 242 -----~~g-~~~~~vr~lf~~A~~~~P~ILfIDEiD~ 272 (613)
.+. .......++...+....|++|+|+|+..
T Consensus 124 ~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~ 160 (264)
T cd01129 124 GINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRD 160 (264)
T ss_pred CceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCC
Confidence 000 1112345666677778899999999853
No 415
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.71 E-value=0.0018 Score=68.84 Aligned_cols=70 Identities=24% Similarity=0.352 Sum_probs=45.1
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc-----CCCeeEee-cchhhh---h---hhhhhHHHHHHHHHHHHcCCCeEEEEcC
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRA-GSEFEE---M---FVGVGARRVRSLFQAAKKKAPCIIFIDE 269 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~-----~~pfi~is-~s~~~~---~---~~g~~~~~vr~lf~~A~~~~P~ILfIDE 269 (613)
.++++++||+|+|||+++++++.+. ...++.+. ..++.- . +.....-...++++.+....|..|++.|
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGE 227 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGE 227 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 3589999999999999999999863 12222221 111110 0 0001122466788888888999999999
Q ss_pred CC
Q 007190 270 ID 271 (613)
Q Consensus 270 iD 271 (613)
+-
T Consensus 228 iR 229 (319)
T PRK13894 228 VR 229 (319)
T ss_pred cC
Confidence 74
No 416
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.71 E-value=0.0047 Score=60.93 Aligned_cols=43 Identities=30% Similarity=0.536 Sum_probs=33.2
Q ss_pred CCCCceEEEEccCCChHHHHHHHHHHhc-CCCeeEeecchhhhh
Q 007190 199 GKLPKGILLTGAPGTGKTLLAKAIAGEA-GVPFFYRAGSEFEEM 241 (613)
Q Consensus 199 ~~~p~gvLL~GPpGTGKT~LAralA~e~-~~pfi~is~s~~~~~ 241 (613)
...|.-+++.|+||+|||+++..+..+. +..++.++..++...
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF 55 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence 3578899999999999999999999988 777888988887554
No 417
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.71 E-value=0.0025 Score=68.35 Aligned_cols=71 Identities=25% Similarity=0.383 Sum_probs=44.7
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcCC--CeeEeec-chhhh-------h-h----hhhhHHHHHHHHHHHHcCCCeEE
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEAGV--PFFYRAG-SEFEE-------M-F----VGVGARRVRSLFQAAKKKAPCII 265 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~~~--pfi~is~-s~~~~-------~-~----~g~~~~~vr~lf~~A~~~~P~IL 265 (613)
..+++|++||+|+|||++++++++.... .++.+.- .++.- . + .+...-...+++..+....|..|
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~I 240 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRI 240 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCeE
Confidence 3458999999999999999999987642 2222211 11100 0 0 01112235567777777888888
Q ss_pred EEcCCC
Q 007190 266 FIDEID 271 (613)
Q Consensus 266 fIDEiD 271 (613)
++.|+-
T Consensus 241 ivGEiR 246 (344)
T PRK13851 241 LLGEMR 246 (344)
T ss_pred EEEeeC
Confidence 888874
No 418
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.70 E-value=0.0039 Score=66.47 Aligned_cols=69 Identities=26% Similarity=0.355 Sum_probs=45.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhhhhh------------hhHHHHHHHHHHHHcCCCeEEEEcCC
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVG------------VGARRVRSLFQAAKKKAPCIIFIDEI 270 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~~~g------------~~~~~vr~lf~~A~~~~P~ILfIDEi 270 (613)
+.+.|.|+||+|||+|++.+++..+.+++.-.+.++.....+ ........ ...+...++.+||+|-
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~~~~~~~~~~l~~~d~~~i~~g~~~~-~~~~~~~a~~iif~D~- 240 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYVEEKLGGDEALQYSDYAQIALGQQRY-IDYAVRHAHKIAFIDT- 240 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHHHHhcCCCcccCHHHHHHHHHHHHHH-HHHHHhhcCCeEEEcC-
Confidence 479999999999999999999999999887666555433221 01111112 2333344567999995
Q ss_pred Ccc
Q 007190 271 DAV 273 (613)
Q Consensus 271 D~l 273 (613)
+.+
T Consensus 241 ~~~ 243 (325)
T TIGR01526 241 DFI 243 (325)
T ss_pred ChH
Confidence 544
No 419
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.67 E-value=0.0016 Score=62.89 Aligned_cols=33 Identities=24% Similarity=0.509 Sum_probs=27.1
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeEeecchh
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 238 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~ 238 (613)
-+++.||||+|||++++.++..+|.+.+ +..++
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~--~~g~~ 37 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHL--STGDL 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE--eHHHH
Confidence 5889999999999999999999886654 44443
No 420
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.66 E-value=0.036 Score=57.60 Aligned_cols=38 Identities=32% Similarity=0.487 Sum_probs=29.2
Q ss_pred CCCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecc
Q 007190 199 GKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGS 236 (613)
Q Consensus 199 ~~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s 236 (613)
...|+-++|+||||+|||+++..+|..+ +..+.-+++.
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 3457889999999999999999998755 5555555544
No 421
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.66 E-value=0.0092 Score=62.03 Aligned_cols=93 Identities=22% Similarity=0.378 Sum_probs=58.8
Q ss_pred Cce-EEEEccCCChHHHHHHHHHHhcCC----CeeEe---------ecchhh-hhhhhhhHHHHHHHHHHHHcCCCeEEE
Q 007190 202 PKG-ILLTGAPGTGKTLLAKAIAGEAGV----PFFYR---------AGSEFE-EMFVGVGARRVRSLFQAAKKKAPCIIF 266 (613)
Q Consensus 202 p~g-vLL~GPpGTGKT~LAralA~e~~~----pfi~i---------s~s~~~-~~~~g~~~~~vr~lf~~A~~~~P~ILf 266 (613)
|+| ||.+||.|+|||+..-++-...|. ..+.+ |-..++ ..-+|.........++.|-...|+||+
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIl 203 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVIL 203 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEE
Confidence 444 678899999999999998887653 22222 222221 223444444455566667778899999
Q ss_pred EcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecC
Q 007190 267 IDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATN 311 (613)
Q Consensus 267 IDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN 311 (613)
+-|+-.+ .+++.-|..-+ .+-+|++|-.
T Consensus 204 vGEmRD~------------ETi~~ALtAAE-----TGHLV~~TLH 231 (353)
T COG2805 204 VGEMRDL------------ETIRLALTAAE-----TGHLVFGTLH 231 (353)
T ss_pred EeccccH------------HHHHHHHHHHh-----cCCEEEEecc
Confidence 9887433 56666665543 4557777643
No 422
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.65 E-value=0.0086 Score=64.21 Aligned_cols=107 Identities=14% Similarity=0.129 Sum_probs=59.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---------CCCeeEeecch-hh-----hhh--hhhh-------------------
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA---------GVPFFYRAGSE-FE-----EMF--VGVG------------------- 246 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~---------~~pfi~is~s~-~~-----~~~--~g~~------------------- 246 (613)
.-..|+||||||||.|+..+|-.. +...++++... |. ... .|..
T Consensus 127 ~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~~~e~~ 206 (344)
T PLN03187 127 CITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAYTYEHQ 206 (344)
T ss_pred eEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCCCHHHH
Confidence 447799999999999999887432 24567776543 10 000 0000
Q ss_pred HHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCC---cccHHHHHHHHHHhhccccCCceEEEee
Q 007190 247 ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE---GHTKKTLHQLLVEMDGFEQNEGIILMAA 309 (613)
Q Consensus 247 ~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~---~~~~~~l~~LL~~ldg~~~~~~ViVIaa 309 (613)
...+..+-.......+.+|+||-|-++....-... ....+.+++++..|..+....++.||.+
T Consensus 207 ~~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~rg~l~~rq~~L~~~~~~L~~lA~~~~vavvvT 272 (344)
T PLN03187 207 YNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTGRGELAERQQKLAQMLSRLTKIAEEFNVAVYMT 272 (344)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcHHhhhccccCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 01122222233345688999999998855321111 1223446666666655544555555554
No 423
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.64 E-value=0.0039 Score=66.44 Aligned_cols=84 Identities=21% Similarity=0.354 Sum_probs=53.0
Q ss_pred CCc-ccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcC-CCeeEeecchhhhhhhh
Q 007190 167 TFK-DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG-VPFFYRAGSEFEEMFVG 244 (613)
Q Consensus 167 ~f~-dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~-~pfi~is~s~~~~~~~g 244 (613)
.|+ ++.|.+++. .++|++++.... . ....-+-++|.||+|+|||++++.+-+-+. .|++.+..+-..+.-..
T Consensus 58 ~f~~~~~G~~~~i---~~lV~~fk~AA~--g-~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm~e~PL~ 131 (358)
T PF08298_consen 58 FFEDEFYGMEETI---ERLVNYFKSAAQ--G-LEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPMHEEPLH 131 (358)
T ss_pred CccccccCcHHHH---HHHHHHHHHHHh--c-cCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCccccChhh
Confidence 467 899999985 455666665433 1 122335789999999999999999987553 36665544433332233
Q ss_pred hhHHHHHHHHHH
Q 007190 245 VGARRVRSLFQA 256 (613)
Q Consensus 245 ~~~~~vr~lf~~ 256 (613)
...+.++..|..
T Consensus 132 L~P~~~r~~~~~ 143 (358)
T PF08298_consen 132 LFPKELRREFED 143 (358)
T ss_pred hCCHhHHHHHHH
Confidence 334556665543
No 424
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.64 E-value=0.015 Score=56.04 Aligned_cols=69 Identities=28% Similarity=0.318 Sum_probs=44.1
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCeeEeecchhh-----hh---h---------hhhhHHHHHHHHHHHHcCCCeEEEE
Q 007190 205 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE-----EM---F---------VGVGARRVRSLFQAAKKKAPCIIFI 267 (613)
Q Consensus 205 vLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~-----~~---~---------~g~~~~~vr~lf~~A~~~~P~ILfI 267 (613)
+|+.||||+|||++|..++...+.+.+++....-. .. + ..+....+.+.+.... .+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~--~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELD--PGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC--CCCEEEE
Confidence 68999999999999999998877788777543221 11 0 0011123333332221 4669999
Q ss_pred cCCCcccc
Q 007190 268 DEIDAVGS 275 (613)
Q Consensus 268 DEiD~l~~ 275 (613)
|-+..+..
T Consensus 80 Dclt~~~~ 87 (169)
T cd00544 80 DCLTLWVT 87 (169)
T ss_pred EcHhHHHH
Confidence 99887643
No 425
>PRK02496 adk adenylate kinase; Provisional
Probab=96.64 E-value=0.0016 Score=63.21 Aligned_cols=30 Identities=27% Similarity=0.504 Sum_probs=26.4
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeEe
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFYR 233 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~i 233 (613)
-+++.||||+|||++++.+|...+.+.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 489999999999999999999998776543
No 426
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.64 E-value=0.019 Score=61.02 Aligned_cols=37 Identities=35% Similarity=0.450 Sum_probs=28.6
Q ss_pred CCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecc
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGS 236 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s 236 (613)
..|.-++|+||+|+|||+++..+|..+ +..+..+++.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 457789999999999999999999865 4445444443
No 427
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.64 E-value=0.032 Score=61.53 Aligned_cols=73 Identities=21% Similarity=0.162 Sum_probs=46.2
Q ss_pred CCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhh-------h--------hh-----hhHHHHHHHHHH
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM-------F--------VG-----VGARRVRSLFQA 256 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~-------~--------~g-----~~~~~vr~lf~~ 256 (613)
..|.-++|+||+|+||||++..+|..+ |..+.-+++..+... + .. ......++.+..
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~ 177 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK 177 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence 457789999999999999999998765 556666665443210 0 00 111223345555
Q ss_pred HHcCCCeEEEEcCCCc
Q 007190 257 AKKKAPCIIFIDEIDA 272 (613)
Q Consensus 257 A~~~~P~ILfIDEiD~ 272 (613)
++...-.+||||=...
T Consensus 178 ~~~~~~DvViIDTaGr 193 (429)
T TIGR01425 178 FKKENFDIIIVDTSGR 193 (429)
T ss_pred HHhCCCCEEEEECCCC
Confidence 6554557888887643
No 428
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.64 E-value=0.0016 Score=64.73 Aligned_cols=33 Identities=36% Similarity=0.622 Sum_probs=27.6
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCeeEeecchhh
Q 007190 205 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 239 (613)
Q Consensus 205 vLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~ 239 (613)
|++.||||+|||++|+.+|...+++.+. ..++.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is--~gdll 34 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS--TGDLL 34 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee--hhHHH
Confidence 7899999999999999999999876655 44443
No 429
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.64 E-value=0.0061 Score=71.66 Aligned_cols=99 Identities=24% Similarity=0.321 Sum_probs=57.6
Q ss_pred eEEEEccCCChHHHHHHHHHHhc---C--CCeeEeecchh----hhhhhhhhHHHHHHHHHHHH----------cCCCeE
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEA---G--VPFFYRAGSEF----EEMFVGVGARRVRSLFQAAK----------KKAPCI 264 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~---~--~pfi~is~s~~----~~~~~g~~~~~vr~lf~~A~----------~~~P~I 264 (613)
-++|.|+||||||++++++...+ + .+++-+....- .....|..+..+..++.... .....+
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~l 419 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCDL 419 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCCE
Confidence 68999999999999999996644 4 34443332211 11112222233334443211 123469
Q ss_pred EEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCCC
Q 007190 265 IFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 315 (613)
Q Consensus 265 LfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~ 315 (613)
|+|||+..+ +...+..|+..+ .....++++|=.+....
T Consensus 420 lIvDEaSMv----------d~~~~~~Ll~~~---~~~~rlilvGD~~QLps 457 (720)
T TIGR01448 420 LIVDESSMM----------DTWLALSLLAAL---PDHARLLLVGDTDQLPS 457 (720)
T ss_pred EEEeccccC----------CHHHHHHHHHhC---CCCCEEEEECccccccC
Confidence 999999887 234556666544 34567888886664433
No 430
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.63 E-value=0.0051 Score=58.05 Aligned_cols=102 Identities=25% Similarity=0.379 Sum_probs=55.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCC--eeEeecchhhh-------h---h---hhhhHHHHHHHHHHHHcCCCeEEEE
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAGVP--FFYRAGSEFEE-------M---F---VGVGARRVRSLFQAAKKKAPCIIFI 267 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~~p--fi~is~s~~~~-------~---~---~g~~~~~vr~lf~~A~~~~P~ILfI 267 (613)
..+.|.||+|+|||+|++++++..... -+++++..... . | ...+ .+.+-.+..+-...|.++++
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G-~~~r~~l~~~l~~~~~i~il 104 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGG-QRQRVALARALLLNPDLLLL 104 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHH-HHHHHHHHHHHhcCCCEEEE
Confidence 568999999999999999999865321 12333322110 0 0 1111 22233344455566889999
Q ss_pred cCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCCC
Q 007190 268 DEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 315 (613)
Q Consensus 268 DEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~ 315 (613)
||...=.. ......+..++..+. .. +..++.+|..++.
T Consensus 105 DEp~~~lD------~~~~~~l~~~l~~~~---~~-~~tii~~sh~~~~ 142 (157)
T cd00267 105 DEPTSGLD------PASRERLLELLRELA---EE-GRTVIIVTHDPEL 142 (157)
T ss_pred eCCCcCCC------HHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHH
Confidence 99864321 122344444444432 22 2345556665443
No 431
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.63 E-value=0.011 Score=55.37 Aligned_cols=70 Identities=27% Similarity=0.383 Sum_probs=41.1
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcCCC--eeEeecc---hhhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCc
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEAGVP--FFYRAGS---EFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDA 272 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~~~p--fi~is~s---~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~ 272 (613)
....+.|.||+|+|||+|++++++..... -+.+++. .+...+.+ + .+.+-.+..+-...|.++++||-..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~-G-~~~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSG-G-EKMRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCH-H-HHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 34568899999999999999999865210 0111110 00000111 1 2223334555566789999999754
No 432
>PTZ00035 Rad51 protein; Provisional
Probab=96.62 E-value=0.011 Score=63.40 Aligned_cols=109 Identities=13% Similarity=0.145 Sum_probs=60.2
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcC---------CCeeEeecchh-h-----hhh--hhh------------------
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEAG---------VPFFYRAGSEF-E-----EMF--VGV------------------ 245 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~~---------~pfi~is~s~~-~-----~~~--~g~------------------ 245 (613)
...-+.++||||+|||+++..++.... ...++++...- . ... .+.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~~~e 196 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAYNHE 196 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccCCHH
Confidence 334577999999999999999985432 34566665431 1 000 000
Q ss_pred -hHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCc---ccHHHHHHHHHHhhccccCCceEEEee
Q 007190 246 -GARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG---HTKKTLHQLLVEMDGFEQNEGIILMAA 309 (613)
Q Consensus 246 -~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~---~~~~~l~~LL~~ldg~~~~~~ViVIaa 309 (613)
....+..+........+.+|+||-|-++....-...+ ..++.+.+++..|..+....++.|+.+
T Consensus 197 ~~~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~vavvvt 264 (337)
T PTZ00035 197 HQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSGRGELAERQQHLGKFLRALQKLADEFNVAVVIT 264 (337)
T ss_pred HHHHHHHHHHHHhhccCccEEEEECcHHhhhhhccCcccHHHHHHHHHHHHHHHHHHHHHcCcEEEEe
Confidence 0011222222233456789999999987543111111 123446666666665544556666644
No 433
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.60 E-value=0.0015 Score=62.70 Aligned_cols=30 Identities=37% Similarity=0.510 Sum_probs=26.9
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeEee
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 234 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~is 234 (613)
-++++|.||||||++++.++ ++|.++++++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 48899999999999999999 9998887754
No 434
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.60 E-value=0.0086 Score=70.22 Aligned_cols=110 Identities=19% Similarity=0.194 Sum_probs=63.4
Q ss_pred CCceEEEEccCCChHHHHHHHHHHh---cCCCeeEeecchhhh-hh---hh------------hhHHHHHHHHHHHHcCC
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGE---AGVPFFYRAGSEFEE-MF---VG------------VGARRVRSLFQAAKKKA 261 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e---~~~pfi~is~s~~~~-~~---~g------------~~~~~vr~lf~~A~~~~ 261 (613)
....++++||||||||+|+..++.. .|.++++++..+-.. .+ .| ..+..+..+-...+...
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~~ 138 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGA 138 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcCC
Confidence 3456889999999999999766543 366777776544211 00 00 01122222222345567
Q ss_pred CeEEEEcCCCccccCCcc-C--C-c---ccHHHHHHHHHHhhccccCCceEEEeec
Q 007190 262 PCIIFIDEIDAVGSTRKQ-W--E-G---HTKKTLHQLLVEMDGFEQNEGIILMAAT 310 (613)
Q Consensus 262 P~ILfIDEiD~l~~~r~~-~--~-~---~~~~~l~~LL~~ldg~~~~~~ViVIaaT 310 (613)
+.+|+||-+.++..+.+- . . . ...+.++++|..|..+-...++.+|.|-
T Consensus 139 ~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~~l~~~nvtvi~TN 194 (790)
T PRK09519 139 LDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFIN 194 (790)
T ss_pred CeEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 899999999999752211 0 1 1 1133445666666666555666666653
No 435
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.60 E-value=0.004 Score=58.42 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=28.4
Q ss_pred EEccCCChHHHHHHHHHHhcCCCeeEeecchhhhhhh
Q 007190 207 LTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFV 243 (613)
Q Consensus 207 L~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~~~ 243 (613)
|.||||+|||++|+.||.+.+. .+++..++.....
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~llr~~~ 35 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLLREEI 35 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHHHHHH
Confidence 6899999999999999999874 5667777665543
No 436
>PF13245 AAA_19: Part of AAA domain
Probab=96.58 E-value=0.0031 Score=52.68 Aligned_cols=32 Identities=41% Similarity=0.474 Sum_probs=21.5
Q ss_pred eEEEEccCCChHH-HHHHHHHHhc------CCCeeEeec
Q 007190 204 GILLTGAPGTGKT-LLAKAIAGEA------GVPFFYRAG 235 (613)
Q Consensus 204 gvLL~GPpGTGKT-~LAralA~e~------~~pfi~is~ 235 (613)
-+++.|||||||| ++++.++... +.+++.++.
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~ 50 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAP 50 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence 4566999999999 5566665544 445555544
No 437
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.58 E-value=0.015 Score=65.39 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=30.0
Q ss_pred CCCCceEEEEccCCChHHHHHHHHHHh----cCCCeeEeecch
Q 007190 199 GKLPKGILLTGAPGTGKTLLAKAIAGE----AGVPFFYRAGSE 237 (613)
Q Consensus 199 ~~~p~gvLL~GPpGTGKT~LAralA~e----~~~pfi~is~s~ 237 (613)
....+.+|++||||||||+||..++.+ .|-+.++++..+
T Consensus 18 lp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE 60 (484)
T TIGR02655 18 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE 60 (484)
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 344567999999999999999988543 267888877543
No 438
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.58 E-value=0.034 Score=61.44 Aligned_cols=75 Identities=23% Similarity=0.281 Sum_probs=48.0
Q ss_pred CCCCceEEEEccCCChHHHHHHHHHHhc----CCCeeEeecchhhhh-------hh---h---------h-hHHHHHHHH
Q 007190 199 GKLPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGSEFEEM-------FV---G---------V-GARRVRSLF 254 (613)
Q Consensus 199 ~~~p~gvLL~GPpGTGKT~LAralA~e~----~~pfi~is~s~~~~~-------~~---g---------~-~~~~vr~lf 254 (613)
...|..++++||||+|||+++..+|..+ |..+..+++..+... +. + . ......+.+
T Consensus 96 ~~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al 175 (428)
T TIGR00959 96 KKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRAL 175 (428)
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHH
Confidence 3457889999999999999988887653 566776776544221 00 0 0 112334555
Q ss_pred HHHHcCCCeEEEEcCCCcc
Q 007190 255 QAAKKKAPCIIFIDEIDAV 273 (613)
Q Consensus 255 ~~A~~~~P~ILfIDEiD~l 273 (613)
..++.....+|+||=...+
T Consensus 176 ~~~~~~~~DvVIIDTaGr~ 194 (428)
T TIGR00959 176 EYAKENGFDVVIVDTAGRL 194 (428)
T ss_pred HHHHhcCCCEEEEeCCCcc
Confidence 5665566678888876544
No 439
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.57 E-value=0.0087 Score=57.38 Aligned_cols=22 Identities=41% Similarity=0.585 Sum_probs=20.5
Q ss_pred ceEEEEccCCChHHHHHHHHHH
Q 007190 203 KGILLTGAPGTGKTLLAKAIAG 224 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~ 224 (613)
--++|+||+||||++|.|++|.
T Consensus 30 e~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHh
Confidence 4589999999999999999998
No 440
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.56 E-value=0.0065 Score=58.33 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=22.7
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
+...+.|.||+|+|||+|.+.+++..
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34568999999999999999999864
No 441
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.54 E-value=0.0018 Score=58.04 Aligned_cols=22 Identities=45% Similarity=0.733 Sum_probs=20.9
Q ss_pred EEEEccCCChHHHHHHHHHHhc
Q 007190 205 ILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 205 vLL~GPpGTGKT~LAralA~e~ 226 (613)
|+|.|+||||||++|+.|+.+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 442
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.54 E-value=0.0041 Score=60.92 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=23.2
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
.|+-++|+||||+|||+|++.+..+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 46679999999999999999998865
No 443
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.54 E-value=0.0078 Score=63.90 Aligned_cols=110 Identities=15% Similarity=0.159 Sum_probs=60.9
Q ss_pred CCCceEEEEccCCChHHHHHHHHHHhcC---------CCeeEeecchh-h-----hhh--hhhh----------------
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAGEAG---------VPFFYRAGSEF-E-----EMF--VGVG---------------- 246 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~e~~---------~pfi~is~s~~-~-----~~~--~g~~---------------- 246 (613)
....-+.++||||+|||+|+..++..+. ...++++..+- . ... .+..
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~~~~~~l~~i~~~~~~~~ 173 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPEDVLDNVAYARAYNT 173 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCCChHHhhccEEEEecCCh
Confidence 3445578999999999999999886321 25677766541 1 000 0000
Q ss_pred ---HHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcc---cHHHHHHHHHHhhccccCCceEEEee
Q 007190 247 ---ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGH---TKKTLHQLLVEMDGFEQNEGIILMAA 309 (613)
Q Consensus 247 ---~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~---~~~~l~~LL~~ldg~~~~~~ViVIaa 309 (613)
...+..+........+.+|+||-|-++....-...+. ....+.+++..|..+....++.|+.+
T Consensus 174 ~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r~~~~~~~~~~~rq~~l~~~~~~L~~la~~~~vavv~t 242 (316)
T TIGR02239 174 DHQLQLLQQAAAMMSESRFALLIVDSATALYRTDFSGRGELSARQMHLARFLRSLQRLADEFGVAVVIT 242 (316)
T ss_pred HHHHHHHHHHHHhhccCCccEEEEECcHHHhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 0112222222334568899999999885432111111 12345666666665544555566554
No 444
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.54 E-value=0.017 Score=56.05 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=20.5
Q ss_pred CceEEEEccCCChHHHHHHHHHHh
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e 225 (613)
..-+.|.||.|+|||||.+++...
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~ 44 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhc
Confidence 345889999999999999999743
No 445
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.52 E-value=0.01 Score=57.00 Aligned_cols=38 Identities=32% Similarity=0.456 Sum_probs=29.7
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchh
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEF 238 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~ 238 (613)
.+..+.|.|+||+|||++++.+++.+ +..+..+++..+
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~ 43 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV 43 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH
Confidence 34578999999999999999999876 444666666544
No 446
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.017 Score=62.50 Aligned_cols=143 Identities=20% Similarity=0.312 Sum_probs=82.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc--CCCeeEeecchhhhhh------hh--------hhHHHHHHHHHHHHcCCCeEEE
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA--GVPFFYRAGSEFEEMF------VG--------VGARRVRSLFQAAKKKAPCIIF 266 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~--~~pfi~is~s~~~~~~------~g--------~~~~~vr~lf~~A~~~~P~ILf 266 (613)
.-+|+-|.||.|||+|.-.++..+ ..+++|+++.+=.... .| ..+..+.++...+....|.+++
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~lvV 173 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPDLVV 173 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCCEEE
Confidence 347788999999999888777654 2389999987643321 11 1234677888888889999999
Q ss_pred EcCCCccccCCccC-Cccc---HHHHHHHHHHhhccccCCceEEEeecCCCCCC-ChhhcCCCccceEEEccCCCHhhHH
Q 007190 267 IDEIDAVGSTRKQW-EGHT---KKTLHQLLVEMDGFEQNEGIILMAATNLPDIL-DPALTRPGRFDRHIVVPNPDVRGRQ 341 (613)
Q Consensus 267 IDEiD~l~~~r~~~-~~~~---~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~L-d~aLlRpgRFd~~I~v~~Pd~~~R~ 341 (613)
||-|+.+....-.. .+.. +...+.|.+.-. ..+..+++++--.....| -|.++- +-.|..++|. -|.....
T Consensus 174 IDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK--~~~i~~fiVGHVTKeG~IAGPrvLE-HmVDtVlyFE-Gd~~~~~ 249 (456)
T COG1066 174 IDSIQTLYSEEITSAPGSVSQVREVAAELMRLAK--TKNIAIFIVGHVTKEGAIAGPRVLE-HMVDTVLYFE-GDRHSRY 249 (456)
T ss_pred EeccceeecccccCCCCcHHHHHHHHHHHHHHHH--HcCCeEEEEEEEcccccccCchhee-eeeeEEEEEe-ccCCCce
Confidence 99999996654222 2222 333334443322 122334555443332222 333332 2345555554 2333445
Q ss_pred HHHHHHhc
Q 007190 342 EILELYLQ 349 (613)
Q Consensus 342 ~IL~~~l~ 349 (613)
.||+.+-+
T Consensus 250 RiLR~vKN 257 (456)
T COG1066 250 RILRSVKN 257 (456)
T ss_pred eeeehhcc
Confidence 56655443
No 447
>PRK01184 hypothetical protein; Provisional
Probab=96.50 E-value=0.0022 Score=62.13 Aligned_cols=29 Identities=41% Similarity=0.618 Sum_probs=25.5
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeEe
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFYR 233 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~i 233 (613)
-++|+||||+||||+++ ++++.|.+++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 58899999999999998 788999888664
No 448
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.50 E-value=0.0039 Score=67.54 Aligned_cols=68 Identities=26% Similarity=0.322 Sum_probs=44.0
Q ss_pred eEEEEccCCChHHHHHHHHHHhcC-----CCeeEeec-chhh-----------hhhhhhhHHHHHHHHHHHHcCCCeEEE
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAG-----VPFFYRAG-SEFE-----------EMFVGVGARRVRSLFQAAKKKAPCIIF 266 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~-----~pfi~is~-s~~~-----------~~~~g~~~~~vr~lf~~A~~~~P~ILf 266 (613)
.+|++||+|+|||++++++.+... ..++.+.- .++. ..-+|..........+.+....|.+|+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 589999999999999999988662 23443321 1211 011122222345566677778999999
Q ss_pred EcCCC
Q 007190 267 IDEID 271 (613)
Q Consensus 267 IDEiD 271 (613)
+.|+-
T Consensus 231 vGEiR 235 (372)
T TIGR02525 231 VGEIR 235 (372)
T ss_pred eCCCC
Confidence 99985
No 449
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.49 E-value=0.0068 Score=68.05 Aligned_cols=95 Identities=20% Similarity=0.236 Sum_probs=57.5
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCce-EEEEccCCChHHHHHHHHHHhcCC---CeeEeec-chh
Q 007190 164 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKG-ILLTGAPGTGKTLLAKAIAGEAGV---PFFYRAG-SEF 238 (613)
Q Consensus 164 ~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~g-vLL~GPpGTGKT~LAralA~e~~~---pfi~is~-s~~ 238 (613)
...+++++.-.++..+.+.+++. .|+| ++++||+|+|||++..++.++.+. .++.+.. .++
T Consensus 217 ~~~~l~~Lg~~~~~~~~l~~~~~--------------~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~ 282 (486)
T TIGR02533 217 VRLDLETLGMSPELLSRFERLIR--------------RPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEY 282 (486)
T ss_pred CCCCHHHcCCCHHHHHHHHHHHh--------------cCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeee
Confidence 34578887666666666665543 2344 789999999999999988776642 3444321 111
Q ss_pred hhhh-----hhh-hHHHHHHHHHHHHcCCCeEEEEcCCCc
Q 007190 239 EEMF-----VGV-GARRVRSLFQAAKKKAPCIIFIDEIDA 272 (613)
Q Consensus 239 ~~~~-----~g~-~~~~vr~lf~~A~~~~P~ILfIDEiD~ 272 (613)
.-.. ++. .........+.+....|.+|+|.|+-.
T Consensus 283 ~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd 322 (486)
T TIGR02533 283 QIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRD 322 (486)
T ss_pred ecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCCC
Confidence 1000 000 001233455556678899999999853
No 450
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.47 E-value=0.0032 Score=60.59 Aligned_cols=28 Identities=36% Similarity=0.376 Sum_probs=25.0
Q ss_pred CCCceEEEEccCCChHHHHHHHHHHhcC
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAGEAG 227 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~e~~ 227 (613)
..|.-++|+|+||+|||++++.+++.+.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4566899999999999999999999875
No 451
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.46 E-value=0.0065 Score=69.03 Aligned_cols=26 Identities=42% Similarity=0.666 Sum_probs=22.9
Q ss_pred CCCCceEEEEccCCChHHHHHHHHHH
Q 007190 199 GKLPKGILLTGAPGTGKTLLAKAIAG 224 (613)
Q Consensus 199 ~~~p~gvLL~GPpGTGKT~LAralA~ 224 (613)
.++...+|+.||+|||||+|.||+|+
T Consensus 416 v~~G~~llI~G~SG~GKTsLlRaiaG 441 (604)
T COG4178 416 VRPGERLLITGESGAGKTSLLRALAG 441 (604)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhc
Confidence 34456799999999999999999998
No 452
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.45 E-value=0.0062 Score=66.71 Aligned_cols=38 Identities=18% Similarity=0.366 Sum_probs=30.8
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchh
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 238 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~ 238 (613)
..+.|.|+|++|||||+|+++||...|.+++.--+.++
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~ 255 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREY 255 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHH
Confidence 34679999999999999999999999988665433333
No 453
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.44 E-value=0.0024 Score=60.68 Aligned_cols=33 Identities=42% Similarity=0.666 Sum_probs=23.4
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCeeEeecchh
Q 007190 205 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 238 (613)
Q Consensus 205 vLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~ 238 (613)
|.|+|+||||||+|+++|+.. |.+++.-.+..+
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~E~ar~~ 34 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVPEYAREI 34 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE--TTHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEeecHHHH
Confidence 789999999999999999998 888774433333
No 454
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=96.44 E-value=0.011 Score=65.89 Aligned_cols=160 Identities=24% Similarity=0.274 Sum_probs=86.3
Q ss_pred ccCCCHHHHHHHHHHHHHhcCchhhhhcCC--CCCceEEEEccCCChHHHHHHHHHHhcCCCeeEe-ecchhhh------
Q 007190 170 DVKGCDDAKQELVEVVEYLKNPSKFTRLGG--KLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR-AGSEFEE------ 240 (613)
Q Consensus 170 dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~--~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~i-s~s~~~~------ 240 (613)
.|.|++.+|+.+.-++-- --++--.-|. +-.-+|||+|.|-|.|+-|.|.+-+.+...+-.. .+|.=+.
T Consensus 302 SI~GH~~vKkAillLLlG--GvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVT 379 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLG--GVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVT 379 (818)
T ss_pred ccccHHHHHHHHHHHHhc--cceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEe
Confidence 367999998887654421 1111111121 2234799999999999999999988664322111 0111000
Q ss_pred hhhhhhHHHHHH-HHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhh------cc--ccCCceEEEeecC
Q 007190 241 MFVGVGARRVRS-LFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMD------GF--EQNEGIILMAATN 311 (613)
Q Consensus 241 ~~~g~~~~~vr~-lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ld------g~--~~~~~ViVIaaTN 311 (613)
.-...+++++.. ..-.|. ..|++|||+|.+.. .++-.+.+.+.+-. |+ .-|.++-|+||.|
T Consensus 380 tD~eTGERRLEAGAMVLAD---RGVVCIDEFDKMsD-------iDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAAN 449 (818)
T KOG0479|consen 380 TDQETGERRLEAGAMVLAD---RGVVCIDEFDKMSD-------IDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAAN 449 (818)
T ss_pred eccccchhhhhcCceEEcc---CceEEehhcccccc-------hhHHHHHHHHhcceEEeEeccchhhhccceeeeeecC
Confidence 001112333221 111122 24999999999932 23344444433211 11 2256688999999
Q ss_pred CCC-------------CCChhhcCCCccceEEEc-cCCCHhhHHHH
Q 007190 312 LPD-------------ILDPALTRPGRFDRHIVV-PNPDVRGRQEI 343 (613)
Q Consensus 312 ~p~-------------~Ld~aLlRpgRFd~~I~v-~~Pd~~~R~~I 343 (613)
..+ .|+..|++ |||..+.+ +.-|.+.-..|
T Consensus 450 PvyG~Yd~~k~P~eNIgLpDSLLS--RFDLlFv~lD~~d~~~D~~i 493 (818)
T KOG0479|consen 450 PVYGQYDQSKTPMENIGLPDSLLS--RFDLLFVVLDDIDADIDRMI 493 (818)
T ss_pred ccccccCCCCChhhccCCcHHHHh--hhcEEEEEeccccchHHHHH
Confidence 653 46788998 99985544 44444333333
No 455
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.43 E-value=0.027 Score=54.11 Aligned_cols=24 Identities=33% Similarity=0.613 Sum_probs=21.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
.-+.|.||+|+|||+|.+.+++..
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 458999999999999999999864
No 456
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.42 E-value=0.0076 Score=71.14 Aligned_cols=97 Identities=27% Similarity=0.332 Sum_probs=55.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHh---cCCCeeEeecchhhhh----hhhhhHHHHHHHHHH-HH----cCCCeEEEEcCC
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGE---AGVPFFYRAGSEFEEM----FVGVGARRVRSLFQA-AK----KKAPCIIFIDEI 270 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e---~~~pfi~is~s~~~~~----~~g~~~~~vr~lf~~-A~----~~~P~ILfIDEi 270 (613)
+-++|.|+||||||++++++... .|..++.+..+..... ..|..+..+..+... .+ .....+|+|||+
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIvDEa 448 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDEA 448 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEEEECc
Confidence 35889999999999999999653 3666665544332211 112222223332211 11 123479999999
Q ss_pred CccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecC
Q 007190 271 DAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATN 311 (613)
Q Consensus 271 D~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN 311 (613)
-.+. ...+..|+.... .....+|++|=.+
T Consensus 449 sMv~----------~~~~~~Ll~~~~--~~~~kliLVGD~~ 477 (744)
T TIGR02768 449 GMVG----------SRQMARVLKEAE--EAGAKVVLVGDPE 477 (744)
T ss_pred ccCC----------HHHHHHHHHHHH--hcCCEEEEECChH
Confidence 8772 334556665443 2345677777444
No 457
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.41 E-value=0.0058 Score=56.62 Aligned_cols=27 Identities=33% Similarity=0.549 Sum_probs=24.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCC
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAGVP 229 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~~p 229 (613)
.-++|.|+.|+|||+++|.+++.++.+
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 468999999999999999999998864
No 458
>PRK04182 cytidylate kinase; Provisional
Probab=96.41 E-value=0.0029 Score=60.56 Aligned_cols=29 Identities=34% Similarity=0.599 Sum_probs=26.7
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeE
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFY 232 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~ 232 (613)
.|+|.|+||+|||++++.+|..++.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 48899999999999999999999998875
No 459
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.40 E-value=0.0075 Score=64.65 Aligned_cols=110 Identities=15% Similarity=0.162 Sum_probs=62.2
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc---------CCCeeEeecch-h-----hhhh--hhh----------------h-
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEA---------GVPFFYRAGSE-F-----EEMF--VGV----------------G- 246 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~---------~~pfi~is~s~-~-----~~~~--~g~----------------~- 246 (613)
...-+.++||||+|||.++..+|-.+ +.+.++++... | .... .+. .
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~~~e 201 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAYNTD 201 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEecCCHH
Confidence 33457799999999999999887432 23677777654 1 1100 000 0
Q ss_pred --HHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCc---ccHHHHHHHHHHhhccccCCceEEEeec
Q 007190 247 --ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG---HTKKTLHQLLVEMDGFEQNEGIILMAAT 310 (613)
Q Consensus 247 --~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~---~~~~~l~~LL~~ldg~~~~~~ViVIaaT 310 (613)
...+..+........+.+|+||-|-++....-...+ ...+.+.+++..|..+....++.|+.+.
T Consensus 202 ~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~~~~~~g~l~~r~~~L~~~l~~L~~lA~~~~vaVviTN 270 (342)
T PLN03186 202 HQSELLLEAASMMAETRFALMIVDSATALYRTEFSGRGELSARQMHLGKFLRSLQRLADEFGVAVVITN 270 (342)
T ss_pred HHHHHHHHHHHHhhccCCCEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEc
Confidence 011222222234567889999999988543211111 1234466777766665555666666553
No 460
>PLN02674 adenylate kinase
Probab=96.39 E-value=0.0033 Score=64.22 Aligned_cols=40 Identities=28% Similarity=0.351 Sum_probs=31.4
Q ss_pred CCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhh
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM 241 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~ 241 (613)
+++..++|.||||+||||+++.+|...+.+. ++..++...
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~h--is~GdllR~ 68 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCH--LATGDMLRA 68 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcE--EchhHHHHH
Confidence 3446799999999999999999999998654 455555443
No 461
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.39 E-value=0.0087 Score=65.05 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=22.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAG 227 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~ 227 (613)
.-++|+||||+|||++++.+++...
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhc
Confidence 3499999999999999999999753
No 462
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.38 E-value=0.013 Score=56.26 Aligned_cols=24 Identities=42% Similarity=0.411 Sum_probs=21.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
..+.|.||+|+|||+|++.+++..
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999854
No 463
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.38 E-value=0.0089 Score=73.06 Aligned_cols=135 Identities=21% Similarity=0.301 Sum_probs=88.8
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhh--hhhhh----hH---HHHHHHHHHHHcCCCeEEEEcCCCccc
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE--MFVGV----GA---RRVRSLFQAAKKKAPCIIFIDEIDAVG 274 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~--~~~g~----~~---~~vr~lf~~A~~~~P~ILfIDEiD~l~ 274 (613)
.+|+.||..+|||++...+|++.|-.|+.++..+..+ .|.|. .. .--..++-.|.+++ --|++||+.-..
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLDELNLAp 968 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLDELNLAP 968 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEeeccccCc
Confidence 4999999999999999999999999999998765432 23332 11 11123333443333 378899987552
Q ss_pred cCCccCCcccHHHHHHHHHHhhc---------cccCCceEEEeecCCCC------CCChhhcCCCccceEEEccCCCHhh
Q 007190 275 STRKQWEGHTKKTLHQLLVEMDG---------FEQNEGIILMAATNLPD------ILDPALTRPGRFDRHIVVPNPDVRG 339 (613)
Q Consensus 275 ~~r~~~~~~~~~~l~~LL~~ldg---------~~~~~~ViVIaaTN~p~------~Ld~aLlRpgRFd~~I~v~~Pd~~~ 339 (613)
. ..-.++|.||..-.. ..+...+.++||-|+|. .|..|++. || ..++|.--..++
T Consensus 969 T-------DVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RF-lE~hFddipedE 1038 (4600)
T COG5271 969 T-------DVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RF-LEMHFDDIPEDE 1038 (4600)
T ss_pred H-------HHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hh-HhhhcccCcHHH
Confidence 1 234566666632111 13456678888888874 46778877 88 566676666677
Q ss_pred HHHHHHHHhc
Q 007190 340 RQEILELYLQ 349 (613)
Q Consensus 340 R~~IL~~~l~ 349 (613)
...||...++
T Consensus 1039 le~ILh~rc~ 1048 (4600)
T COG5271 1039 LEEILHGRCE 1048 (4600)
T ss_pred HHHHHhccCc
Confidence 8888776553
No 464
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.36 E-value=0.014 Score=57.65 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=20.1
Q ss_pred ceEEEEccCCChHHHHHHHHHH
Q 007190 203 KGILLTGAPGTGKTLLAKAIAG 224 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~ 224 (613)
.-++|+||.|+|||++.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 4699999999999999999983
No 465
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.35 E-value=0.024 Score=58.92 Aligned_cols=68 Identities=22% Similarity=0.347 Sum_probs=36.9
Q ss_pred EEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhh-h--hh-hhhhHHHHHHHHHH----HHcCCCeEEEEcCCCcc
Q 007190 205 ILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFE-E--MF-VGVGARRVRSLFQA----AKKKAPCIIFIDEIDAV 273 (613)
Q Consensus 205 vLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~-~--~~-~g~~~~~vr~lf~~----A~~~~P~ILfIDEiD~l 273 (613)
|+|+|-||+|||++|+.|+..+ +..+..++...+. . .| ....++..|..+.. +-.. ..||++|+..++
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~-~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSK-DTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT--SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhcc-CeEEEEeCCchH
Confidence 7899999999999999998864 5667777754443 1 12 12234444443333 3222 369999998877
No 466
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.32 E-value=0.0034 Score=59.60 Aligned_cols=29 Identities=34% Similarity=0.573 Sum_probs=26.5
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeE
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFY 232 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~ 232 (613)
-|.++|+||+|||++|+.+++.++.|++.
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 37899999999999999999999998765
No 467
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.32 E-value=0.02 Score=64.78 Aligned_cols=76 Identities=29% Similarity=0.326 Sum_probs=48.3
Q ss_pred CCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhhhh------hh----------------------hHH
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV------GV----------------------GAR 248 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~~~------g~----------------------~~~ 248 (613)
.....++++||||+|||+++..++.+. |-++++++..+-.+.+. |. ...
T Consensus 271 ~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~ 350 (509)
T PRK09302 271 FRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGLED 350 (509)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCHHH
Confidence 334568899999999999999987654 67777776543211110 00 012
Q ss_pred HHHHHHHHHHcCCCeEEEEcCCCcccc
Q 007190 249 RVRSLFQAAKKKAPCIIFIDEIDAVGS 275 (613)
Q Consensus 249 ~vr~lf~~A~~~~P~ILfIDEiD~l~~ 275 (613)
.+..+........|.+|+||-+..+..
T Consensus 351 ~~~~i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 351 HLIIIKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred HHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 223333444556788999999988743
No 468
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.31 E-value=0.029 Score=55.37 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=19.6
Q ss_pred ceEEEEccCCChHHHHHHHHH
Q 007190 203 KGILLTGAPGTGKTLLAKAIA 223 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA 223 (613)
+.++|+||.|+|||++.|.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 359999999999999999998
No 469
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.30 E-value=0.019 Score=55.50 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=22.5
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
+..-+.|.||+|+|||+|++.+++..
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33468999999999999999999864
No 470
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=96.26 E-value=0.019 Score=56.05 Aligned_cols=36 Identities=28% Similarity=0.423 Sum_probs=28.3
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhhh
Q 007190 205 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMF 242 (613)
Q Consensus 205 vLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~~ 242 (613)
|.|+|++|+|||++++.++...+.+++ ++.++....
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i--~~D~~~~~~ 37 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVI--DADKIAHQV 37 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEE--eCCHHHHHH
Confidence 689999999999999999998767765 455554433
No 471
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.26 E-value=0.025 Score=63.93 Aligned_cols=38 Identities=29% Similarity=0.347 Sum_probs=28.9
Q ss_pred CCCceEEEEccCCChHHHHHHHHHHhc----CCCeeEeecch
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGSE 237 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~e~----~~pfi~is~s~ 237 (613)
.....+|++|+||||||+|+..++.+. |-++++++..+
T Consensus 29 p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee 70 (509)
T PRK09302 29 PKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEE 70 (509)
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccC
Confidence 344569999999999999999876532 66777776544
No 472
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.25 E-value=0.027 Score=56.19 Aligned_cols=22 Identities=27% Similarity=0.690 Sum_probs=19.7
Q ss_pred ceEEEEccCCChHHHHHHHHHH
Q 007190 203 KGILLTGAPGTGKTLLAKAIAG 224 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~ 224 (613)
.-+.++||+|+|||||.|++-.
T Consensus 29 evv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 3589999999999999999965
No 473
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.23 E-value=0.0087 Score=64.12 Aligned_cols=25 Identities=48% Similarity=0.789 Sum_probs=21.2
Q ss_pred CCCce--EEEEccCCChHHHHHHHHHH
Q 007190 200 KLPKG--ILLTGAPGTGKTLLAKAIAG 224 (613)
Q Consensus 200 ~~p~g--vLL~GPpGTGKT~LAralA~ 224 (613)
..++| +-|-||+||||||+.|.||+
T Consensus 27 ~i~~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 27 DIKKGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred eecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 34444 66999999999999999998
No 474
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.22 E-value=0.031 Score=56.41 Aligned_cols=21 Identities=29% Similarity=0.591 Sum_probs=19.4
Q ss_pred eEEEEccCCChHHHHHHHHHH
Q 007190 204 GILLTGAPGTGKTLLAKAIAG 224 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~ 224 (613)
-+-+.||+|+|||||...++.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 488999999999999999986
No 475
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.22 E-value=0.015 Score=55.44 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.2
Q ss_pred CceEEEEccCCChHHHHHHHHHH
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAG 224 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~ 224 (613)
|+..+++||.|+|||++.++++-
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~ 43 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGL 43 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999853
No 476
>PRK14526 adenylate kinase; Provisional
Probab=96.17 E-value=0.0045 Score=61.90 Aligned_cols=34 Identities=24% Similarity=0.460 Sum_probs=27.6
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhh
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 239 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~ 239 (613)
.++|+||||+|||++++.+|+..+.+++ +..++.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~i--s~G~ll 35 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHI--STGDLF 35 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee--ecChHH
Confidence 3889999999999999999999886654 444443
No 477
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.16 E-value=0.043 Score=54.58 Aligned_cols=22 Identities=32% Similarity=0.323 Sum_probs=20.0
Q ss_pred ceEEEEccCCChHHHHHHHHHH
Q 007190 203 KGILLTGAPGTGKTLLAKAIAG 224 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~ 224 (613)
+-++|+||.|+|||++.+.++.
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999999974
No 478
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.16 E-value=0.016 Score=65.03 Aligned_cols=26 Identities=31% Similarity=0.299 Sum_probs=22.2
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
....+.|+||+|+|||+++..||..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34678999999999999999998753
No 479
>PLN02459 probable adenylate kinase
Probab=96.15 E-value=0.0058 Score=62.95 Aligned_cols=36 Identities=28% Similarity=0.453 Sum_probs=28.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhh
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 240 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~ 240 (613)
..++|.||||+|||++++.+|...+.+. ++..++..
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~--is~gdllR 65 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGVPH--IATGDLVR 65 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcE--EeCcHHHH
Confidence 4588899999999999999999998654 45555543
No 480
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.15 E-value=0.019 Score=58.84 Aligned_cols=55 Identities=24% Similarity=0.269 Sum_probs=33.5
Q ss_pred HHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCC
Q 007190 250 VRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD 314 (613)
Q Consensus 250 vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~ 314 (613)
-|-++..|-...|.++++||=-.= -+...+..+..||.++. .. +..|+..|....
T Consensus 146 QRV~lARAL~~~p~lllLDEP~~g------vD~~~~~~i~~lL~~l~---~e-g~tIl~vtHDL~ 200 (254)
T COG1121 146 QRVLLARALAQNPDLLLLDEPFTG------VDVAGQKEIYDLLKELR---QE-GKTVLMVTHDLG 200 (254)
T ss_pred HHHHHHHHhccCCCEEEecCCccc------CCHHHHHHHHHHHHHHH---HC-CCEEEEEeCCcH
Confidence 344666677788999999994221 12234556666666665 33 566666676543
No 481
>PRK04132 replication factor C small subunit; Provisional
Probab=96.14 E-value=0.0033 Score=74.35 Aligned_cols=50 Identities=28% Similarity=0.520 Sum_probs=40.4
Q ss_pred ccccCCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHH
Q 007190 157 KEVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLL 218 (613)
Q Consensus 157 ~~~~~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~L 218 (613)
+++....++.+|+||+|++.+++.|+..+.. .+.| +++|+||||+||++.
T Consensus 7 ~~~~~k~RP~~f~dIiGqe~i~~~Lk~~i~~-----------~~i~-h~l~~g~~g~~~cl~ 56 (846)
T PRK04132 7 KPWVEKYRPQRLDDIVGQEHIVKRLKHYVKT-----------GSMP-HLLFAGPPGVGKCLT 56 (846)
T ss_pred ccHHHhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCC-eEEEECCCCCCcccc
Confidence 4566677888999999999999999888862 3455 478999999999644
No 482
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.14 E-value=0.019 Score=59.10 Aligned_cols=106 Identities=19% Similarity=0.210 Sum_probs=59.8
Q ss_pred EEEccCCChHHHHHHHHHHhcCC---------CeeEeecch-hh--------hhhhhhh------------------HHH
Q 007190 206 LLTGAPGTGKTLLAKAIAGEAGV---------PFFYRAGSE-FE--------EMFVGVG------------------ARR 249 (613)
Q Consensus 206 LL~GPpGTGKT~LAralA~e~~~---------pfi~is~s~-~~--------~~~~g~~------------------~~~ 249 (613)
=|+||||+|||.|+-.+|-.+.. ..++++... |. +.|.... ...
T Consensus 42 Ei~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~~~~~l~~~ 121 (256)
T PF08423_consen 42 EIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVFDLEELLEL 121 (256)
T ss_dssp EEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-SSHHHHHHH
T ss_pred EEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecCCHHHHHHH
Confidence 39999999999999988865433 367776533 21 1110000 011
Q ss_pred HHHHHHHHHcCCCeEEEEcCCCccccCCccCC---cccHHHHHHHHHHhhccccCCceEEEeecC
Q 007190 250 VRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE---GHTKKTLHQLLVEMDGFEQNEGIILMAATN 311 (613)
Q Consensus 250 vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~---~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN 311 (613)
+..+-.........+|+||-|-++....-... ....+.+..++..|..+....++.|+.|..
T Consensus 122 L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~~~~~~~R~~~L~~~~~~L~~lA~~~~iaVvvTNq 186 (256)
T PF08423_consen 122 LEQLPKLLSESKIKLIVIDSIAALFRSEFSGRGDLAERQRMLARLARILKRLARKYNIAVVVTNQ 186 (256)
T ss_dssp HHHHHHHHHHSCEEEEEEETSSHHHHHHSGSTTTHHHHHHHHHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred HHHHHhhccccceEEEEecchHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHhCCceEEeece
Confidence 22222222345567999999999865321111 123466777776676665666666665443
No 483
>PF13479 AAA_24: AAA domain
Probab=96.14 E-value=0.0063 Score=60.79 Aligned_cols=68 Identities=25% Similarity=0.340 Sum_probs=39.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCee-Eeecch--hhh-----hhhhhhHHHHHHHHHHH--HcCCCeEEEEcCCC
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEAGVPFF-YRAGSE--FEE-----MFVGVGARRVRSLFQAA--KKKAPCIIFIDEID 271 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~~~pfi-~is~s~--~~~-----~~~g~~~~~vr~lf~~A--~~~~P~ILfIDEiD 271 (613)
|..++||||||+|||++|..+ +.|++ .+.... +.. .+.-.+-..+.+.+..+ ....-..|+||-++
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis 78 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSIS 78 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHH
Confidence 456999999999999999888 43432 222221 000 00001234445555443 22344699999998
Q ss_pred cc
Q 007190 272 AV 273 (613)
Q Consensus 272 ~l 273 (613)
.+
T Consensus 79 ~~ 80 (213)
T PF13479_consen 79 WL 80 (213)
T ss_pred HH
Confidence 75
No 484
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.13 E-value=0.014 Score=64.60 Aligned_cols=96 Identities=22% Similarity=0.261 Sum_probs=61.0
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCce-EEEEccCCChHHHHHHHHHHhcCCCee-Eeecchhhhh
Q 007190 164 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKG-ILLTGAPGTGKTLLAKAIAGEAGVPFF-YRAGSEFEEM 241 (613)
Q Consensus 164 ~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~g-vLL~GPpGTGKT~LAralA~e~~~pfi-~is~s~~~~~ 241 (613)
...+|+++.......+.+.+++. .|.| +|++||.|+|||+...++.++++-+.. .++..|-++.
T Consensus 233 ~~l~l~~Lg~~~~~~~~~~~~~~--------------~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~ 298 (500)
T COG2804 233 VILDLEKLGMSPFQLARLLRLLN--------------RPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEY 298 (500)
T ss_pred ccCCHHHhCCCHHHHHHHHHHHh--------------CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeee
Confidence 35578888888887777776663 3445 677899999999999999998876544 2222222221
Q ss_pred h--------hhhh-HHHHHHHHHHHHcCCCeEEEEcCCCcc
Q 007190 242 F--------VGVG-ARRVRSLFQAAKKKAPCIIFIDEIDAV 273 (613)
Q Consensus 242 ~--------~g~~-~~~vr~lf~~A~~~~P~ILfIDEiD~l 273 (613)
. +... .-.....++..-...|+||.+.||-..
T Consensus 299 ~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIRD~ 339 (500)
T COG2804 299 QLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIRDL 339 (500)
T ss_pred ecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccCCH
Confidence 0 0000 001223444455678999999999543
No 485
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.13 E-value=0.041 Score=58.02 Aligned_cols=142 Identities=21% Similarity=0.196 Sum_probs=76.6
Q ss_pred cccCC-CHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhhhhhhhH
Q 007190 169 KDVKG-CDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGA 247 (613)
Q Consensus 169 ~dV~G-~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~~~g~~~ 247 (613)
+++.+ .++.++.+.+++.+.-.+. .+..+-++|+|+.|+|||++.+.+..-.|-....+..+.....+-+
T Consensus 48 ~~~~~~d~~~~~~l~~~lg~~L~~~------~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~~~~~~~--- 118 (304)
T TIGR01613 48 LETFGGDNELIEYLQRVIGYSLTGN------YTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNEFQE--- 118 (304)
T ss_pred HHHhCCCHHHHHHHHHHHhHHhcCC------CCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchhhhhccC---
Confidence 34444 3456777777776633321 2345789999999999999999998877754433232222221111
Q ss_pred HHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHH--h-------hccccCCceEEEeecCCCCCC--
Q 007190 248 RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVE--M-------DGFEQNEGIILMAATNLPDIL-- 316 (613)
Q Consensus 248 ~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~--l-------dg~~~~~~ViVIaaTN~p~~L-- 316 (613)
.-|..+.-..-.+++.||++.-.. .....+..+..- + +.+.-.....+|.+||.+-.+
T Consensus 119 ----~~f~~a~l~gk~l~~~~E~~~~~~-------~~~~~lK~lt~gd~i~~~~k~k~~~~~~~~~~~i~~tN~~P~~~~ 187 (304)
T TIGR01613 119 ----HRFGLARLEGKRAVIGDEVQKGYR-------DDESTFKSLTGGDTITARFKNKDPFEFTPKFTLVQSTNHLPRIRG 187 (304)
T ss_pred ----CCchhhhhcCCEEEEecCCCCCcc-------ccHHhhhhhhcCCeEEeecccCCcEEEEEeeEEEEEcCCCCccCC
Confidence 013334333445889999863210 122344444310 0 011112235566677765433
Q ss_pred -ChhhcCCCccceEEEcc
Q 007190 317 -DPALTRPGRFDRHIVVP 333 (613)
Q Consensus 317 -d~aLlRpgRFd~~I~v~ 333 (613)
+.++.| |+ ..|.++
T Consensus 188 ~~~a~~R--R~-~vi~f~ 202 (304)
T TIGR01613 188 FDGGIKR--RL-RIIPFT 202 (304)
T ss_pred CChhhee--eE-EEEecc
Confidence 467777 77 455554
No 486
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.12 E-value=0.051 Score=52.42 Aligned_cols=26 Identities=31% Similarity=0.533 Sum_probs=22.7
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
....+.|.||+|+|||+|++.+++..
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 44568999999999999999999864
No 487
>PLN02199 shikimate kinase
Probab=96.12 E-value=0.01 Score=62.01 Aligned_cols=32 Identities=31% Similarity=0.524 Sum_probs=29.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCeeEee
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 234 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~~pfi~is 234 (613)
++|+|.|++|+|||++++.+|+.++.+|+..+
T Consensus 103 ~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 103 RSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 47999999999999999999999999998643
No 488
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.12 E-value=0.02 Score=54.78 Aligned_cols=23 Identities=35% Similarity=0.252 Sum_probs=19.7
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~ 226 (613)
-+.+|+++|+|||++|-++|-++
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra 26 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRA 26 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37789999999999999997654
No 489
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.11 E-value=0.027 Score=53.86 Aligned_cols=26 Identities=42% Similarity=0.584 Sum_probs=22.6
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
+..-+.|.||+|+|||+|++.+++..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568999999999999999999864
No 490
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.11 E-value=0.018 Score=54.89 Aligned_cols=40 Identities=33% Similarity=0.485 Sum_probs=32.7
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhh
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM 241 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~ 241 (613)
|..|.|+|.||+|||++|+++...+ +.+.+.+++..+...
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~ 44 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHG 44 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhc
Confidence 4568999999999999999998866 788999998877543
No 491
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.10 E-value=0.042 Score=59.55 Aligned_cols=61 Identities=21% Similarity=0.183 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchh
Q 007190 175 DDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEF 238 (613)
Q Consensus 175 ~e~k~~L~eiv~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~ 238 (613)
++++..+.+.+.. +..+..+ ....++.++|+||+|+|||+++..+|..+ +.++..+++..+
T Consensus 181 ~~v~~~~~~~L~~~l~~~~~~---~~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDty 245 (407)
T PRK12726 181 DDITDWFVPYLSGKLAVEDSF---DLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTF 245 (407)
T ss_pred HHHHHHHHHHhcCcEeeCCCc---eecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCcc
Confidence 4555555555443 2222222 23456789999999999999999998755 445555555443
No 492
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.10 E-value=0.0041 Score=61.42 Aligned_cols=22 Identities=41% Similarity=0.655 Sum_probs=17.3
Q ss_pred EEEEccCCChHHHHHHHHHHhc
Q 007190 205 ILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 205 vLL~GPpGTGKT~LAralA~e~ 226 (613)
.++.||||||||+++..++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8999999999998777766654
No 493
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.07 E-value=0.017 Score=55.80 Aligned_cols=24 Identities=38% Similarity=0.596 Sum_probs=21.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
..+.|.||.|+|||+|++++++..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458899999999999999999754
No 494
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.06 E-value=0.022 Score=61.73 Aligned_cols=27 Identities=37% Similarity=0.497 Sum_probs=23.7
Q ss_pred CCCceEEEEccCCChHHHHHHHHHHhc
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
..|..+++.||.|||||++.+++...+
T Consensus 20 ~~~~~~fv~G~~GtGKs~l~~~i~~~~ 46 (364)
T PF05970_consen 20 EEGLNFFVTGPAGTGKSFLIKAIIDYL 46 (364)
T ss_pred cCCcEEEEEcCCCCChhHHHHHHHHHh
Confidence 356789999999999999999998766
No 495
>PRK12338 hypothetical protein; Provisional
Probab=96.05 E-value=0.0062 Score=64.47 Aligned_cols=31 Identities=29% Similarity=0.453 Sum_probs=27.6
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcCCCee
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFF 231 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~~~pfi 231 (613)
.|.-+++.|+||+|||++|+++|..++.+.+
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~ 33 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHL 33 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEE
Confidence 4678999999999999999999999987653
No 496
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.03 E-value=0.17 Score=56.98 Aligned_cols=122 Identities=10% Similarity=0.178 Sum_probs=82.4
Q ss_pred CCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhH
Q 007190 261 APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGR 340 (613)
Q Consensus 261 ~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R 340 (613)
.|.|+++.+++.+... ....+.+..+..... ...+.+|+.+.+ ..+++.|.+ +-..+.+|+|+.+++
T Consensus 81 ~~~~~vl~d~h~~~~~-----~~~~r~l~~l~~~~~---~~~~~~i~~~~~--~~~p~el~~---~~~~~~~~lP~~~ei 147 (489)
T CHL00195 81 TPALFLLKDFNRFLND-----ISISRKLRNLSRILK---TQPKTIIIIASE--LNIPKELKD---LITVLEFPLPTESEI 147 (489)
T ss_pred CCcEEEEecchhhhcc-----hHHHHHHHHHHHHHH---hCCCEEEEEcCC--CCCCHHHHh---ceeEEeecCcCHHHH
Confidence 3789999999998632 122344444443333 234445554443 467777775 556889999999999
Q ss_pred HHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 007190 341 QEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEF 400 (613)
Q Consensus 341 ~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~ 400 (613)
.++++.+....... ++.+++.+++.+.|+|-.++++++..+.. ....++.+++..
T Consensus 148 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~-----~~~~~~~~~~~~ 203 (489)
T CHL00195 148 KKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKIIA-----TYKTIDENSIPL 203 (489)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----HcCCCChhhHHH
Confidence 99998887653332 45668899999999999999999976432 123466665443
No 497
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=96.02 E-value=0.029 Score=54.35 Aligned_cols=40 Identities=28% Similarity=0.420 Sum_probs=31.5
Q ss_pred CCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhh
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFE 239 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~ 239 (613)
..|.-+.++|+||+|||++++.+++.+ +...+.+++..+.
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r 58 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR 58 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence 456679999999999999999999886 4456666665554
No 498
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.00 E-value=0.026 Score=68.14 Aligned_cols=99 Identities=21% Similarity=0.247 Sum_probs=57.9
Q ss_pred eEEEEccCCChHHHHHHHHHH---hcCCCeeEeecchhhhh----hhhhhHHHHHHHHHHHH-----cCCCeEEEEcCCC
Q 007190 204 GILLTGAPGTGKTLLAKAIAG---EAGVPFFYRAGSEFEEM----FVGVGARRVRSLFQAAK-----KKAPCIIFIDEID 271 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~---e~~~pfi~is~s~~~~~----~~g~~~~~vr~lf~~A~-----~~~P~ILfIDEiD 271 (613)
-++|.|+||||||++.+++.. ..|..++-+..+..... -.|.....+..++.... .....+|+|||+-
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~tGi~a~TI~sll~~~~~~~~~l~~~~vlIVDEAS 443 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIASRTIASLEHGWGQGRDLLTSRDVLVIDEAG 443 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhccCcchhhHHHHHhhhcccccccccCcEEEEECcc
Confidence 467999999999999887754 34666665544332221 12223344444432211 1233599999998
Q ss_pred ccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCC
Q 007190 272 AVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD 314 (613)
Q Consensus 272 ~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~ 314 (613)
.+. ...+..|+.... .....+|+||=++...
T Consensus 444 Mv~----------~~~m~~LL~~a~--~~garvVLVGD~~QLp 474 (988)
T PRK13889 444 MVG----------TRQLERVLSHAA--DAGAKVVLVGDPQQLQ 474 (988)
T ss_pred cCC----------HHHHHHHHHhhh--hCCCEEEEECCHHHcC
Confidence 772 345566665544 2345678887665433
No 499
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.99 E-value=0.0063 Score=59.29 Aligned_cols=29 Identities=31% Similarity=0.436 Sum_probs=24.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCee
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAGVPFF 231 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~~pfi 231 (613)
..+.|.||+|+||||+++.+++..+.+|+
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~ 31 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLL 31 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEE
Confidence 36899999999999999999998776543
No 500
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.99 E-value=0.009 Score=59.20 Aligned_cols=38 Identities=29% Similarity=0.371 Sum_probs=29.2
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcC-CCeeEeecchh
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEAG-VPFFYRAGSEF 238 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~~-~pfi~is~s~~ 238 (613)
.|.-|.|.||||+|||||+++|++.++ ..+..++..++
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~ 43 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSY 43 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcc
Confidence 456799999999999999999999884 34444555443
Done!