Query 007190
Match_columns 613
No_of_seqs 646 out of 3790
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 19:27:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007190.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007190hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ce7_A Cell division protein F 100.0 3.7E-87 1.3E-91 736.1 46.9 444 163-608 10-473 (476)
2 2dhr_A FTSH; AAA+ protein, hex 100.0 1.2E-83 4.2E-88 711.9 42.5 430 164-597 26-472 (499)
3 4b4t_J 26S protease regulatory 100.0 9.4E-54 3.2E-58 458.4 27.6 253 158-410 137-394 (405)
4 4b4t_I 26S protease regulatory 100.0 3.1E-52 1E-56 448.0 27.6 251 159-409 172-427 (437)
5 4b4t_H 26S protease regulatory 100.0 8E-52 2.7E-56 448.6 26.6 252 161-412 201-457 (467)
6 4b4t_L 26S protease subunit RP 100.0 5.4E-51 1.9E-55 443.0 27.9 249 160-408 172-425 (437)
7 4b4t_M 26S protease regulatory 100.0 2.9E-51 1E-55 444.8 25.4 248 161-408 173-425 (434)
8 4b4t_K 26S protease regulatory 100.0 5.8E-50 2E-54 434.2 26.8 247 161-407 164-416 (428)
9 2di4_A Zinc protease, cell div 100.0 3.5E-50 1.2E-54 402.1 16.7 189 406-594 1-202 (238)
10 3cf2_A TER ATPase, transitiona 100.0 2.1E-45 7.3E-50 424.3 11.0 229 160-388 468-701 (806)
11 3cf2_A TER ATPase, transitiona 100.0 4.6E-43 1.6E-47 404.9 20.3 247 163-409 198-463 (806)
12 1lv7_A FTSH; alpha/beta domain 100.0 1.9E-39 6.6E-44 328.8 27.0 249 161-409 4-256 (257)
13 3cf0_A Transitional endoplasmi 100.0 9.7E-39 3.3E-43 332.3 23.1 246 160-405 6-281 (301)
14 2x8a_A Nuclear valosin-contain 100.0 9.2E-39 3.1E-43 328.7 22.0 246 163-408 4-267 (274)
15 2qz4_A Paraplegin; AAA+, SPG7, 100.0 7.7E-39 2.6E-43 323.5 20.9 253 165-417 2-261 (262)
16 3h4m_A Proteasome-activating n 100.0 2.8E-37 9.6E-42 316.8 25.1 247 162-408 10-261 (285)
17 1xwi_A SKD1 protein; VPS4B, AA 100.0 5.9E-37 2E-41 322.2 25.4 225 161-388 4-233 (322)
18 3eie_A Vacuolar protein sortin 100.0 8.3E-37 2.8E-41 320.6 23.4 227 159-388 8-238 (322)
19 1ixz_A ATP-dependent metallopr 100.0 3E-36 1E-40 304.8 25.3 243 160-402 7-253 (254)
20 2qp9_X Vacuolar protein sortin 100.0 7.3E-36 2.5E-40 318.0 23.1 228 158-388 40-271 (355)
21 2r62_A Cell division protease 100.0 4.7E-38 1.6E-42 320.0 5.0 250 161-410 3-258 (268)
22 1iy2_A ATP-dependent metallopr 100.0 4.1E-35 1.4E-39 301.0 26.5 243 160-402 31-277 (278)
23 3hu3_A Transitional endoplasmi 100.0 1.9E-35 6.4E-40 327.1 23.3 243 164-406 199-460 (489)
24 2zan_A Vacuolar protein sortin 100.0 1.4E-34 4.8E-39 317.0 22.2 229 157-388 122-355 (444)
25 3b9p_A CG5977-PA, isoform A; A 100.0 6E-33 2.1E-37 286.5 21.3 244 159-405 11-272 (297)
26 3d8b_A Fidgetin-like protein 1 100.0 1.6E-32 5.4E-37 292.3 24.2 247 159-408 74-337 (357)
27 3vfd_A Spastin; ATPase, microt 100.0 7.6E-32 2.6E-36 290.0 24.3 246 158-406 104-366 (389)
28 1ypw_A Transitional endoplasmi 100.0 6.8E-35 2.3E-39 340.6 -4.1 228 162-389 470-702 (806)
29 3t15_A Ribulose bisphosphate c 100.0 3.3E-32 1.1E-36 282.3 8.4 226 197-436 31-281 (293)
30 1ypw_A Transitional endoplasmi 100.0 1E-28 3.5E-33 288.5 22.2 244 163-406 198-460 (806)
31 2c9o_A RUVB-like 1; hexameric 99.9 2.4E-27 8.4E-32 260.3 -2.0 199 165-380 33-262 (456)
32 3syl_A Protein CBBX; photosynt 99.9 1.2E-23 4.2E-28 217.5 17.3 225 167-399 28-280 (309)
33 3uk6_A RUVB-like 2; hexameric 99.9 2E-23 7E-28 221.1 19.0 250 165-438 40-361 (368)
34 3pfi_A Holliday junction ATP-d 99.9 3.5E-22 1.2E-26 209.5 23.4 219 159-405 19-254 (338)
35 1hqc_A RUVB; extended AAA-ATPa 99.9 3.9E-21 1.3E-25 199.8 19.9 215 164-405 7-238 (324)
36 1ofh_A ATP-dependent HSL prote 99.8 6E-21 2.1E-25 196.5 15.4 234 169-404 15-298 (310)
37 1d2n_A N-ethylmaleimide-sensit 99.8 1E-20 3.6E-25 192.8 15.7 224 168-403 32-262 (272)
38 2chg_A Replication factor C sm 99.8 3.4E-19 1.1E-23 172.7 19.7 205 160-403 8-224 (226)
39 1g41_A Heat shock protein HSLU 99.8 3E-21 1E-25 209.8 5.6 170 169-346 15-190 (444)
40 3m6a_A ATP-dependent protease 99.8 2.8E-20 9.7E-25 208.4 12.7 223 166-404 78-340 (543)
41 3u61_B DNA polymerase accessor 99.8 1.2E-19 4.1E-24 189.3 16.4 207 158-403 15-235 (324)
42 2v1u_A Cell division control p 99.8 4.2E-19 1.4E-23 187.7 20.2 223 167-405 17-276 (387)
43 2z4s_A Chromosomal replication 99.8 2.5E-19 8.6E-24 195.8 18.8 220 164-406 100-333 (440)
44 3pvs_A Replication-associated 99.8 2.6E-19 8.8E-24 196.0 16.4 208 161-405 18-244 (447)
45 3hws_A ATP-dependent CLP prote 99.8 4.4E-19 1.5E-23 188.5 16.8 217 171-389 17-326 (363)
46 1l8q_A Chromosomal replication 99.8 1.4E-18 4.8E-23 181.5 20.1 197 164-384 6-214 (324)
47 1njg_A DNA polymerase III subu 99.8 1.7E-18 5.8E-23 169.4 19.3 206 160-402 14-248 (250)
48 1sxj_A Activator 1 95 kDa subu 99.8 2.9E-19 1E-23 199.0 15.2 228 157-403 27-272 (516)
49 3bos_A Putative DNA replicatio 99.8 2.7E-18 9.1E-23 169.4 19.8 205 165-403 24-241 (242)
50 1in4_A RUVB, holliday junction 99.8 1.1E-17 3.6E-22 176.2 24.4 218 161-406 17-251 (334)
51 1g8p_A Magnesium-chelatase 38 99.8 2.1E-18 7.3E-23 180.9 18.7 218 164-408 19-325 (350)
52 2r44_A Uncharacterized protein 99.8 1.5E-18 5E-23 181.7 17.1 215 167-409 25-301 (331)
53 1sxj_D Activator 1 41 kDa subu 99.8 1.9E-18 6.6E-23 181.2 16.8 213 157-403 25-261 (353)
54 2qby_B CDC6 homolog 3, cell di 99.8 5.7E-18 2E-22 179.7 19.8 212 168-406 19-271 (384)
55 2chq_A Replication factor C sm 99.8 4E-18 1.4E-22 175.8 15.5 210 158-402 6-223 (319)
56 1jbk_A CLPB protein; beta barr 99.8 9.8E-19 3.3E-23 165.5 9.8 160 163-344 16-194 (195)
57 3pxg_A Negative regulator of g 99.8 2.9E-18 9.9E-23 188.8 15.0 208 162-405 173-406 (468)
58 1r6b_X CLPA protein; AAA+, N-t 99.8 6.7E-18 2.3E-22 196.1 18.6 224 163-406 180-434 (758)
59 2qby_A CDC6 homolog 1, cell di 99.7 3.2E-17 1.1E-21 173.0 20.0 223 166-406 17-273 (386)
60 1sxj_B Activator 1 37 kDa subu 99.7 2.5E-17 8.5E-22 170.2 17.8 207 158-403 10-229 (323)
61 1fnn_A CDC6P, cell division co 99.7 9.2E-17 3.1E-21 170.3 22.3 219 167-406 15-275 (389)
62 1jr3_A DNA polymerase III subu 99.7 3.9E-17 1.3E-21 172.5 19.2 206 160-402 7-241 (373)
63 4fcw_A Chaperone protein CLPB; 99.7 9.6E-18 3.3E-22 173.2 13.9 202 169-385 17-278 (311)
64 1um8_A ATP-dependent CLP prote 99.7 2.6E-17 9E-22 175.6 17.4 230 170-401 22-361 (376)
65 3te6_A Regulatory protein SIR3 99.7 1.2E-17 3.9E-22 174.7 12.8 159 171-350 22-213 (318)
66 1iqp_A RFCS; clamp loader, ext 99.7 5.8E-17 2E-21 167.7 17.9 210 158-402 14-231 (327)
67 3pxi_A Negative regulator of g 99.7 3.9E-17 1.3E-21 189.8 16.4 192 162-389 173-389 (758)
68 3pxi_A Negative regulator of g 99.7 7.7E-17 2.6E-21 187.3 17.3 195 168-382 490-721 (758)
69 2p65_A Hypothetical protein PF 99.7 1.4E-17 4.9E-22 157.4 8.9 154 163-336 16-187 (187)
70 1qvr_A CLPB protein; coiled co 99.7 1.4E-16 4.8E-21 187.5 18.4 205 163-388 164-395 (854)
71 1sxj_C Activator 1 40 kDa subu 99.7 2.9E-16 9.8E-21 165.2 15.7 211 158-402 14-236 (340)
72 1r6b_X CLPA protein; AAA+, N-t 99.7 2.7E-16 9.1E-21 182.7 16.7 198 169-383 458-713 (758)
73 1sxj_E Activator 1 40 kDa subu 99.7 3.5E-16 1.2E-20 164.6 16.1 194 159-383 4-242 (354)
74 3nbx_X ATPase RAVA; AAA+ ATPas 99.7 7.3E-17 2.5E-21 178.5 10.9 209 170-406 23-286 (500)
75 2bjv_A PSP operon transcriptio 99.7 2E-16 6.9E-21 160.2 13.1 204 166-398 3-250 (265)
76 1ojl_A Transcriptional regulat 99.6 8.8E-16 3E-20 159.7 13.6 202 169-399 2-246 (304)
77 3f9v_A Minichromosome maintena 99.6 2.5E-16 8.5E-21 178.2 7.1 218 169-405 295-587 (595)
78 1qvr_A CLPB protein; coiled co 99.6 3.1E-15 1.1E-19 176.1 12.9 202 168-384 557-818 (854)
79 1w5s_A Origin recognition comp 99.5 1.5E-13 5E-18 146.8 20.3 227 167-406 20-294 (412)
80 3n70_A Transport activator; si 99.5 2.2E-14 7.7E-19 132.5 9.8 113 169-313 1-116 (145)
81 1a5t_A Delta prime, HOLB; zinc 99.5 1.8E-13 6.1E-18 143.9 17.7 161 198-381 20-208 (334)
82 3k1j_A LON protease, ATP-depen 99.5 1.5E-13 5.3E-18 155.7 16.3 217 162-404 34-374 (604)
83 3co5_A Putative two-component 99.5 3.5E-14 1.2E-18 131.0 7.1 112 170-313 5-116 (143)
84 3cmw_A Protein RECA, recombina 99.4 9.8E-14 3.4E-18 170.5 9.3 151 162-313 1013-1218(1706)
85 2gno_A DNA polymerase III, gam 99.4 2.4E-12 8.1E-17 134.0 14.3 142 173-348 1-152 (305)
86 3kw6_A 26S protease regulatory 99.3 2.9E-12 1E-16 106.2 9.1 75 333-407 1-75 (78)
87 2krk_A 26S protease regulatory 99.3 4E-12 1.4E-16 107.6 8.7 77 332-408 8-84 (86)
88 3vlf_B 26S protease regulatory 99.3 5.7E-12 2E-16 107.0 8.9 79 336-414 2-80 (88)
89 1ny5_A Transcriptional regulat 99.3 1.1E-11 3.9E-16 132.9 10.9 204 168-401 136-383 (387)
90 4akg_A Glutathione S-transfera 99.2 4.1E-11 1.4E-15 153.2 14.4 138 202-350 1267-1433(2695)
91 3ec2_A DNA replication protein 99.2 8E-11 2.7E-15 111.9 10.8 134 164-314 5-144 (180)
92 2w58_A DNAI, primosome compone 99.1 2.1E-10 7E-15 110.9 10.7 103 164-273 20-127 (202)
93 3aji_B S6C, proteasome (prosom 99.1 1.8E-10 6.1E-15 96.4 7.4 74 336-409 2-75 (83)
94 3f8t_A Predicted ATPase involv 99.1 2.1E-09 7.3E-14 116.7 17.0 213 170-406 214-484 (506)
95 2dzn_B 26S protease regulatory 99.0 1.3E-10 4.4E-15 97.2 3.5 73 338-410 1-73 (82)
96 3dzd_A Transcriptional regulat 99.0 1.7E-09 5.8E-14 115.3 12.0 190 169-384 129-360 (368)
97 2fna_A Conserved hypothetical 99.0 3.6E-08 1.2E-12 102.2 20.7 185 167-380 11-252 (357)
98 2vhj_A Ntpase P4, P4; non- hyd 98.9 5.2E-10 1.8E-14 116.4 6.1 115 203-320 124-242 (331)
99 2kjq_A DNAA-related protein; s 98.9 1.4E-09 4.7E-14 101.1 7.2 104 202-332 36-145 (149)
100 2qen_A Walker-type ATPase; unk 98.9 1.2E-07 4E-12 98.3 22.0 188 167-379 10-247 (350)
101 2qgz_A Helicase loader, putati 98.9 4.1E-09 1.4E-13 109.6 9.2 101 165-273 120-226 (308)
102 2r2a_A Uncharacterized protein 98.8 5.7E-09 1.9E-13 101.8 6.7 131 201-340 4-158 (199)
103 1svm_A Large T antigen; AAA+ f 98.7 1.5E-08 5E-13 108.3 7.2 119 198-334 165-284 (377)
104 4akg_A Glutathione S-transfera 98.6 4.2E-07 1.4E-11 116.8 19.0 126 203-345 646-790 (2695)
105 1jr3_D DNA polymerase III, del 98.6 9.3E-07 3.2E-11 92.5 16.2 175 200-404 16-208 (343)
106 3cmu_A Protein RECA, recombina 98.5 1.3E-07 4.3E-12 118.1 9.6 112 199-310 1424-1561(2050)
107 2c9o_A RUVB-like 1; hexameric 98.5 2.9E-07 1E-11 100.6 11.3 128 262-405 296-437 (456)
108 3vkg_A Dynein heavy chain, cyt 98.5 4.6E-07 1.6E-11 117.1 12.8 136 203-349 1305-1470(3245)
109 1tue_A Replication protein E1; 98.3 2.6E-07 9E-12 90.2 3.9 29 203-231 59-87 (212)
110 1ye8_A Protein THEP1, hypothet 98.1 1E-05 3.6E-10 77.1 11.0 27 204-230 2-28 (178)
111 3vkg_A Dynein heavy chain, cyt 98.1 1E-05 3.5E-10 104.9 13.9 126 203-345 605-750 (3245)
112 1u0j_A DNA replication protein 98.1 6.6E-06 2.2E-10 83.5 8.9 26 203-228 105-130 (267)
113 3upu_A ATP-dependent DNA helic 98.0 1.8E-05 6.3E-10 86.3 10.1 131 157-312 12-166 (459)
114 2cvh_A DNA repair and recombin 97.9 2.8E-05 9.5E-10 75.1 9.9 37 201-237 19-55 (220)
115 2w0m_A SSO2452; RECA, SSPF, un 97.9 2.4E-05 8.3E-10 75.8 9.2 35 201-235 22-59 (235)
116 1xp8_A RECA protein, recombina 97.9 4.5E-05 1.6E-09 81.0 10.6 110 200-309 72-207 (366)
117 1z6t_A APAF-1, apoptotic prote 97.8 0.00024 8.2E-09 79.4 16.7 174 167-378 122-328 (591)
118 1n0w_A DNA repair protein RAD5 97.8 4.6E-05 1.6E-09 74.7 9.1 75 201-275 23-133 (243)
119 3sfz_A APAF-1, apoptotic pepti 97.8 0.00044 1.5E-08 83.3 18.2 175 166-376 121-326 (1249)
120 2zr9_A Protein RECA, recombina 97.7 4.3E-05 1.5E-09 80.6 8.0 75 201-275 60-153 (349)
121 1qhx_A CPT, protein (chloramph 97.7 6.4E-05 2.2E-09 70.3 8.3 39 202-240 3-41 (178)
122 3hr8_A Protein RECA; alpha and 97.7 7.5E-05 2.6E-09 78.9 9.7 108 202-309 61-194 (356)
123 2z43_A DNA repair and recombin 97.7 4.1E-05 1.4E-09 79.7 7.2 110 200-309 105-254 (324)
124 3cmu_A Protein RECA, recombina 97.7 5.9E-05 2E-09 94.5 8.6 113 199-311 1078-1216(2050)
125 1u94_A RECA protein, recombina 97.6 8.8E-05 3E-09 78.5 7.9 110 200-309 61-196 (356)
126 2ehv_A Hypothetical protein PH 97.6 0.00026 8.8E-09 69.5 10.6 127 201-334 29-207 (251)
127 1g41_A Heat shock protein HSLU 97.6 0.00056 1.9E-08 74.2 13.5 151 248-402 239-430 (444)
128 1v5w_A DMC1, meiotic recombina 97.5 0.00015 5.2E-09 76.0 8.6 109 203-311 123-272 (343)
129 1gvn_B Zeta; postsegregational 97.5 0.00028 9.5E-09 72.2 10.1 60 175-238 10-69 (287)
130 3io5_A Recombination and repai 97.5 0.00023 7.8E-09 73.9 9.1 111 199-309 25-168 (333)
131 2p5t_B PEZT; postsegregational 97.5 0.00031 1E-08 70.3 9.5 40 199-238 29-68 (253)
132 4a74_A DNA repair and recombin 97.5 0.00013 4.4E-09 70.8 6.3 26 201-226 24-49 (231)
133 3trf_A Shikimate kinase, SK; a 97.4 7.1E-05 2.4E-09 70.5 4.1 32 202-233 5-36 (185)
134 2orw_A Thymidine kinase; TMTK, 97.4 5.4E-05 1.8E-09 72.4 2.9 31 203-233 4-37 (184)
135 2dr3_A UPF0273 protein PH0284; 97.4 0.00031 1.1E-08 68.8 8.3 37 200-236 21-60 (247)
136 2rhm_A Putative kinase; P-loop 97.4 0.00011 3.8E-09 69.4 4.4 34 199-232 2-35 (193)
137 2r8r_A Sensor protein; KDPD, P 97.4 0.0018 6.1E-08 64.0 13.1 162 203-386 7-209 (228)
138 1pzn_A RAD51, DNA repair and r 97.4 0.00035 1.2E-08 73.6 8.5 38 200-237 129-175 (349)
139 3lda_A DNA repair protein RAD5 97.3 0.00034 1.2E-08 75.1 8.4 111 201-311 177-326 (400)
140 1nlf_A Regulatory protein REPA 97.3 0.00063 2.2E-08 68.8 9.8 25 202-226 30-54 (279)
141 2i1q_A DNA repair and recombin 97.3 0.00018 6.1E-09 74.5 5.8 109 201-309 97-255 (322)
142 2b8t_A Thymidine kinase; deoxy 97.3 0.00036 1.2E-08 68.9 7.4 70 203-273 13-101 (223)
143 3vaa_A Shikimate kinase, SK; s 97.3 0.00013 4.6E-09 69.9 4.1 33 201-233 24-56 (199)
144 2r6a_A DNAB helicase, replicat 97.3 0.0008 2.7E-08 73.2 10.5 37 199-235 200-240 (454)
145 2zts_A Putative uncharacterize 97.3 0.00046 1.6E-08 67.6 7.6 37 200-236 28-68 (251)
146 2a5y_B CED-4; apoptosis; HET: 97.2 0.0042 1.4E-07 69.1 15.9 165 172-369 131-329 (549)
147 2iyv_A Shikimate kinase, SK; t 97.2 0.00018 6.2E-09 67.7 3.7 30 204-233 4-33 (184)
148 3a4m_A L-seryl-tRNA(SEC) kinas 97.2 0.0017 5.7E-08 65.2 10.9 38 202-239 4-44 (260)
149 2cdn_A Adenylate kinase; phosp 97.2 0.00026 8.9E-09 67.8 4.6 35 199-233 17-51 (201)
150 3e1s_A Exodeoxyribonuclease V, 97.2 0.00043 1.5E-08 77.8 6.9 97 203-312 205-317 (574)
151 3dm5_A SRP54, signal recogniti 97.2 0.0031 1.1E-07 68.4 13.3 73 201-273 99-194 (443)
152 3kb2_A SPBC2 prophage-derived 97.1 0.00026 8.9E-09 65.3 4.2 31 204-234 3-33 (173)
153 3iij_A Coilin-interacting nucl 97.1 0.00022 7.4E-09 67.0 3.7 33 201-233 10-42 (180)
154 1zp6_A Hypothetical protein AT 97.1 0.00031 1.1E-08 66.3 4.6 39 200-238 7-45 (191)
155 2q6t_A DNAB replication FORK h 97.1 0.0014 4.8E-08 71.0 10.3 37 199-235 197-237 (444)
156 1qf9_A UMP/CMP kinase, protein 97.1 0.00028 9.5E-09 66.3 4.0 34 200-233 4-37 (194)
157 1via_A Shikimate kinase; struc 97.1 0.00022 7.5E-09 66.7 3.3 29 204-232 6-34 (175)
158 1kag_A SKI, shikimate kinase I 97.1 0.00029 9.9E-09 65.4 4.0 31 202-232 4-34 (173)
159 1y63_A LMAJ004144AAA protein; 97.1 0.00027 9.1E-09 67.0 3.7 32 202-233 10-42 (184)
160 1zuh_A Shikimate kinase; alpha 97.1 0.0003 1E-08 65.3 3.9 31 203-233 8-38 (168)
161 2fz4_A DNA repair protein RAD2 97.1 0.003 1E-07 62.5 11.2 33 204-236 110-142 (237)
162 1tev_A UMP-CMP kinase; ploop, 97.1 0.00028 9.5E-09 66.4 3.5 31 202-232 3-33 (196)
163 1ly1_A Polynucleotide kinase; 97.0 0.00028 9.5E-09 65.6 3.3 30 202-231 2-32 (181)
164 2i3b_A HCR-ntpase, human cance 97.0 0.0016 5.5E-08 62.4 8.7 23 204-226 3-25 (189)
165 1vma_A Cell division protein F 97.0 0.0058 2E-07 63.1 13.5 73 199-271 101-196 (306)
166 3t61_A Gluconokinase; PSI-biol 97.0 0.00044 1.5E-08 66.2 4.5 32 201-232 17-48 (202)
167 1cr0_A DNA primase/helicase; R 97.0 0.001 3.5E-08 67.7 7.5 36 199-234 32-71 (296)
168 2c95_A Adenylate kinase 1; tra 97.0 0.00036 1.2E-08 65.9 3.8 33 201-233 8-40 (196)
169 2pez_A Bifunctional 3'-phospho 97.0 0.00052 1.8E-08 64.4 4.6 39 200-238 3-44 (179)
170 1aky_A Adenylate kinase; ATP:A 97.0 0.0004 1.4E-08 67.5 3.8 33 201-233 3-35 (220)
171 3lw7_A Adenylate kinase relate 97.0 0.00035 1.2E-08 64.2 3.1 29 204-233 3-31 (179)
172 1e6c_A Shikimate kinase; phosp 96.9 0.00041 1.4E-08 64.2 3.6 30 203-232 3-32 (173)
173 2ze6_A Isopentenyl transferase 96.9 0.00047 1.6E-08 69.1 4.2 32 204-235 3-34 (253)
174 3be4_A Adenylate kinase; malar 96.9 0.00039 1.3E-08 67.6 3.5 32 202-233 5-36 (217)
175 2iut_A DNA translocase FTSK; n 96.9 0.0037 1.3E-07 69.7 11.6 74 263-345 345-420 (574)
176 3bh0_A DNAB-like replicative h 96.9 0.0038 1.3E-07 64.5 10.9 37 199-235 65-104 (315)
177 2bwj_A Adenylate kinase 5; pho 96.9 0.00046 1.6E-08 65.4 3.6 32 202-233 12-43 (199)
178 2vli_A Antibiotic resistance p 96.9 0.00043 1.5E-08 64.8 3.3 30 202-231 5-34 (183)
179 1zd8_A GTP:AMP phosphotransfer 96.9 0.00046 1.6E-08 67.5 3.6 33 201-233 6-38 (227)
180 3kl4_A SRP54, signal recogniti 96.9 0.0034 1.2E-07 67.9 10.7 73 201-273 96-191 (433)
181 3cmw_A Protein RECA, recombina 96.9 0.0019 6.4E-08 80.3 9.7 111 200-310 1427-1565(1706)
182 3cm0_A Adenylate kinase; ATP-b 96.9 0.00049 1.7E-08 64.6 3.4 31 202-232 4-34 (186)
183 1ukz_A Uridylate kinase; trans 96.9 0.00061 2.1E-08 65.1 4.1 33 201-233 14-46 (203)
184 3tlx_A Adenylate kinase 2; str 96.9 0.00055 1.9E-08 68.1 3.8 34 200-233 27-60 (243)
185 1kht_A Adenylate kinase; phosp 96.9 0.00043 1.5E-08 65.0 2.9 26 202-227 3-28 (192)
186 3jvv_A Twitching mobility prot 96.8 0.0019 6.5E-08 68.2 8.0 95 204-315 125-233 (356)
187 3dl0_A Adenylate kinase; phosp 96.8 0.00059 2E-08 66.0 3.7 30 204-233 2-31 (216)
188 2ius_A DNA translocase FTSK; n 96.8 0.0039 1.3E-07 68.9 10.6 75 262-345 297-374 (512)
189 1zak_A Adenylate kinase; ATP:A 96.8 0.00047 1.6E-08 67.1 2.9 32 201-232 4-35 (222)
190 1ak2_A Adenylate kinase isoenz 96.8 0.00066 2.3E-08 66.7 3.9 32 202-233 16-47 (233)
191 3umf_A Adenylate kinase; rossm 96.8 0.00067 2.3E-08 66.7 3.9 39 200-240 27-65 (217)
192 3fb4_A Adenylate kinase; psych 96.8 0.00065 2.2E-08 65.6 3.6 30 204-233 2-31 (216)
193 2pt5_A Shikimate kinase, SK; a 96.8 0.00068 2.3E-08 62.5 3.6 30 204-233 2-31 (168)
194 1knq_A Gluconate kinase; ALFA/ 96.7 0.00093 3.2E-08 62.2 4.1 31 202-232 8-38 (175)
195 1g5t_A COB(I)alamin adenosyltr 96.7 0.0071 2.4E-07 58.4 10.3 116 204-333 30-178 (196)
196 3crm_A TRNA delta(2)-isopenten 96.7 0.00093 3.2E-08 69.6 4.2 36 201-236 4-39 (323)
197 4eun_A Thermoresistant glucoki 96.7 0.0011 3.8E-08 63.5 4.3 36 201-238 28-63 (200)
198 2px0_A Flagellar biosynthesis 96.7 0.013 4.3E-07 60.2 12.3 36 201-236 104-143 (296)
199 1q57_A DNA primase/helicase; d 96.6 0.0081 2.8E-07 66.0 11.2 38 199-236 239-280 (503)
200 1e4v_A Adenylate kinase; trans 96.6 0.0012 4E-08 64.0 3.6 30 204-233 2-31 (214)
201 1nks_A Adenylate kinase; therm 96.5 0.0012 4.2E-08 61.8 3.6 34 204-237 3-39 (194)
202 1ex7_A Guanylate kinase; subst 96.5 0.0024 8.2E-08 61.2 5.6 24 203-226 2-25 (186)
203 3uie_A Adenylyl-sulfate kinase 96.5 0.0019 6.5E-08 61.8 4.9 39 200-238 23-64 (200)
204 3bgw_A DNAB-like replicative h 96.5 0.0085 2.9E-07 65.0 10.5 37 199-235 194-233 (444)
205 2pbr_A DTMP kinase, thymidylat 96.5 0.0018 6.3E-08 60.7 4.5 31 204-234 2-35 (195)
206 2v54_A DTMP kinase, thymidylat 96.5 0.0017 5.8E-08 61.7 4.2 33 202-234 4-37 (204)
207 2ga8_A Hypothetical 39.9 kDa p 96.5 0.00093 3.2E-08 70.4 2.5 29 204-232 26-54 (359)
208 1cke_A CK, MSSA, protein (cyti 96.5 0.0018 6.2E-08 62.7 4.4 30 203-232 6-35 (227)
209 3sr0_A Adenylate kinase; phosp 96.5 0.0015 5.2E-08 63.5 3.8 34 204-239 2-35 (206)
210 2if2_A Dephospho-COA kinase; a 96.4 0.0014 4.9E-08 62.5 3.2 29 204-233 3-31 (204)
211 1uf9_A TT1252 protein; P-loop, 96.4 0.0019 6.4E-08 61.3 4.0 31 201-232 7-37 (203)
212 3ake_A Cytidylate kinase; CMP 96.4 0.0025 8.5E-08 60.7 4.7 30 204-233 4-33 (208)
213 2wwf_A Thymidilate kinase, put 96.4 0.0013 4.4E-08 63.0 2.7 31 201-231 9-39 (212)
214 1w36_D RECD, exodeoxyribonucle 96.4 0.0095 3.3E-07 67.2 10.2 23 203-225 165-187 (608)
215 2jaq_A Deoxyguanosine kinase; 96.4 0.0018 6.1E-08 61.4 3.6 29 204-232 2-30 (205)
216 2eyu_A Twitching motility prot 96.4 0.0014 4.7E-08 66.2 2.8 68 203-271 26-108 (261)
217 1uj2_A Uridine-cytidine kinase 96.4 0.0022 7.4E-08 63.9 4.3 40 200-239 20-67 (252)
218 2ewv_A Twitching motility prot 96.3 0.0031 1.1E-07 66.8 5.7 78 194-271 128-219 (372)
219 1vt4_I APAF-1 related killer D 96.3 0.015 5.1E-07 69.1 11.7 43 172-225 131-173 (1221)
220 3b6e_A Interferon-induced heli 96.3 0.012 4E-07 56.0 9.1 23 203-225 49-71 (216)
221 2xb4_A Adenylate kinase; ATP-b 96.3 0.0021 7.3E-08 62.7 3.8 29 204-232 2-30 (223)
222 2z0h_A DTMP kinase, thymidylat 96.3 0.0028 9.4E-08 59.8 4.4 30 205-234 3-35 (197)
223 1nn5_A Similar to deoxythymidy 96.3 0.0015 5.2E-08 62.5 2.6 29 201-229 8-36 (215)
224 2bbw_A Adenylate kinase 4, AK4 96.3 0.0029 9.9E-08 62.6 4.6 32 201-232 26-57 (246)
225 1jjv_A Dephospho-COA kinase; P 96.3 0.0024 8.2E-08 61.1 3.8 29 203-232 3-31 (206)
226 3r20_A Cytidylate kinase; stru 96.2 0.0027 9.3E-08 63.0 4.2 32 201-232 8-39 (233)
227 2plr_A DTMP kinase, probable t 96.2 0.0029 1E-07 60.2 4.0 28 202-229 4-31 (213)
228 2qor_A Guanylate kinase; phosp 96.2 0.0037 1.3E-07 59.9 4.6 28 200-227 10-37 (204)
229 4gp7_A Metallophosphoesterase; 96.2 0.0091 3.1E-07 55.7 7.2 20 202-221 9-28 (171)
230 3a8t_A Adenylate isopentenyltr 96.1 0.0024 8.3E-08 66.8 3.3 36 201-236 39-74 (339)
231 1ltq_A Polynucleotide kinase; 96.1 0.0021 7.2E-08 65.3 2.8 30 202-231 2-32 (301)
232 1tf7_A KAIC; homohexamer, hexa 96.1 0.025 8.7E-07 62.5 11.6 72 202-273 281-383 (525)
233 3foz_A TRNA delta(2)-isopenten 96.1 0.0034 1.2E-07 64.9 4.2 38 200-237 8-45 (316)
234 2yvu_A Probable adenylyl-sulfa 96.1 0.0052 1.8E-07 57.8 5.1 38 200-237 11-51 (186)
235 3tau_A Guanylate kinase, GMP k 96.1 0.0046 1.6E-07 59.6 4.7 27 201-227 7-33 (208)
236 4a1f_A DNAB helicase, replicat 96.1 0.0032 1.1E-07 65.9 3.8 37 199-235 43-82 (338)
237 1tf7_A KAIC; homohexamer, hexa 96.1 0.029 1E-06 62.0 11.8 111 201-316 38-188 (525)
238 1w4r_A Thymidine kinase; type 96.0 0.011 3.7E-07 57.0 7.2 70 202-273 20-103 (195)
239 3nwj_A ATSK2; P loop, shikimat 96.0 0.0035 1.2E-07 62.8 3.8 31 203-233 49-79 (250)
240 2pt7_A CAG-ALFA; ATPase, prote 96.0 0.0023 8E-08 66.7 2.6 70 203-272 172-251 (330)
241 3ney_A 55 kDa erythrocyte memb 96.0 0.0075 2.5E-07 58.3 5.8 27 201-227 18-44 (197)
242 2grj_A Dephospho-COA kinase; T 96.0 0.0079 2.7E-07 57.7 5.9 36 204-241 14-49 (192)
243 1m7g_A Adenylylsulfate kinase; 96.0 0.0043 1.5E-07 59.8 4.1 39 200-238 23-65 (211)
244 2h92_A Cytidylate kinase; ross 96.0 0.0036 1.2E-07 60.4 3.5 32 202-233 3-34 (219)
245 3zvl_A Bifunctional polynucleo 96.0 0.0068 2.3E-07 65.2 6.1 34 199-232 255-288 (416)
246 1vht_A Dephospho-COA kinase; s 96.0 0.0038 1.3E-07 60.3 3.7 31 202-233 4-34 (218)
247 2qt1_A Nicotinamide riboside k 95.9 0.0035 1.2E-07 60.0 3.1 32 202-233 21-53 (207)
248 3c8u_A Fructokinase; YP_612366 95.9 0.0057 1.9E-07 58.9 4.6 27 201-227 21-47 (208)
249 2gxq_A Heat resistant RNA depe 95.8 0.03 1E-06 53.0 9.3 18 203-220 39-56 (207)
250 1q3t_A Cytidylate kinase; nucl 95.8 0.0059 2E-07 59.9 4.5 32 201-232 15-46 (236)
251 2f6r_A COA synthase, bifunctio 95.8 0.0044 1.5E-07 63.0 3.5 31 201-232 74-104 (281)
252 3llm_A ATP-dependent RNA helic 95.8 0.044 1.5E-06 53.6 10.5 21 203-223 77-97 (235)
253 1kgd_A CASK, peripheral plasma 95.7 0.0061 2.1E-07 57.3 3.9 26 202-227 5-30 (180)
254 1x6v_B Bifunctional 3'-phospho 95.7 0.015 5E-07 65.8 7.6 38 201-238 51-91 (630)
255 3d3q_A TRNA delta(2)-isopenten 95.7 0.0058 2E-07 64.0 3.9 34 202-235 7-40 (340)
256 4e22_A Cytidylate kinase; P-lo 95.7 0.0071 2.4E-07 60.3 4.3 30 203-232 28-57 (252)
257 1t6n_A Probable ATP-dependent 95.7 0.11 3.6E-06 49.8 12.5 58 166-225 14-74 (220)
258 1rz3_A Hypothetical protein rb 95.6 0.02 6.9E-07 54.7 7.3 36 201-236 21-59 (201)
259 4g1u_C Hemin import ATP-bindin 95.6 0.028 9.5E-07 56.7 8.5 23 203-225 38-60 (266)
260 1hv8_A Putative ATP-dependent 95.6 0.051 1.8E-06 55.6 10.7 58 166-225 6-67 (367)
261 2axn_A 6-phosphofructo-2-kinas 95.6 0.022 7.4E-07 63.1 8.3 39 201-239 34-75 (520)
262 3rlf_A Maltose/maltodextrin im 95.6 0.014 4.9E-07 62.0 6.6 24 203-226 30-53 (381)
263 3exa_A TRNA delta(2)-isopenten 95.6 0.0071 2.4E-07 62.6 3.9 35 202-236 3-37 (322)
264 1xx6_A Thymidine kinase; NESG, 95.5 0.018 6.2E-07 55.2 6.4 70 203-273 9-93 (191)
265 3e70_C DPA, signal recognition 95.5 0.053 1.8E-06 56.4 10.4 28 199-226 126-153 (328)
266 2v3c_C SRP54, signal recogniti 95.5 0.034 1.2E-06 60.0 9.2 37 200-236 97-136 (432)
267 3fvq_A Fe(3+) IONS import ATP- 95.5 0.037 1.2E-06 58.4 9.1 22 204-225 32-53 (359)
268 2j41_A Guanylate kinase; GMP, 95.5 0.0083 2.8E-07 56.9 3.8 26 201-226 5-30 (207)
269 2bdt_A BH3686; alpha-beta prot 95.5 0.0085 2.9E-07 56.3 3.8 34 204-238 4-37 (189)
270 1ls1_A Signal recognition part 95.5 0.078 2.7E-06 54.1 11.3 35 201-235 97-134 (295)
271 2qmh_A HPR kinase/phosphorylas 95.4 0.0061 2.1E-07 59.1 2.7 32 202-234 34-65 (205)
272 1zu4_A FTSY; GTPase, signal re 95.4 0.036 1.2E-06 57.5 8.4 39 199-237 102-143 (320)
273 3asz_A Uridine kinase; cytidin 95.4 0.0079 2.7E-07 57.6 3.3 32 201-232 5-38 (211)
274 3fdi_A Uncharacterized protein 95.3 0.011 3.6E-07 57.1 4.0 29 204-232 8-36 (201)
275 2xxa_A Signal recognition part 95.3 0.16 5.5E-06 54.8 13.7 73 200-272 98-194 (433)
276 1v43_A Sugar-binding transport 95.3 0.034 1.2E-06 58.9 8.2 23 203-225 38-60 (372)
277 2yhs_A FTSY, cell division pro 95.3 0.053 1.8E-06 59.5 9.8 28 199-226 290-317 (503)
278 1qde_A EIF4A, translation init 95.2 0.11 3.8E-06 49.7 11.0 58 165-224 13-74 (224)
279 3tr0_A Guanylate kinase, GMP k 95.2 0.011 3.8E-07 56.0 3.8 25 202-226 7-31 (205)
280 3eph_A TRNA isopentenyltransfe 95.2 0.01 3.6E-07 63.4 3.7 34 202-235 2-35 (409)
281 3a00_A Guanylate kinase, GMP k 95.2 0.011 3.7E-07 55.8 3.5 25 203-227 2-26 (186)
282 1z47_A CYSA, putative ABC-tran 95.1 0.032 1.1E-06 58.7 7.4 23 203-225 42-64 (355)
283 2j37_W Signal recognition part 95.1 0.092 3.1E-06 57.8 11.2 36 200-235 99-137 (504)
284 1p9r_A General secretion pathw 95.1 0.045 1.5E-06 58.8 8.6 50 165-227 143-192 (418)
285 1odf_A YGR205W, hypothetical 3 95.1 0.011 3.9E-07 60.4 3.6 29 199-227 28-56 (290)
286 2j9r_A Thymidine kinase; TK1, 95.1 0.023 8E-07 55.5 5.6 31 204-234 30-63 (214)
287 4b3f_X DNA-binding protein smu 95.0 0.095 3.2E-06 59.4 11.4 49 174-236 191-242 (646)
288 3thx_B DNA mismatch repair pro 95.0 0.05 1.7E-06 64.1 9.0 24 201-224 672-695 (918)
289 3tui_C Methionine import ATP-b 94.9 0.03 1E-06 59.2 6.3 23 203-225 55-77 (366)
290 2xau_A PRE-mRNA-splicing facto 94.9 0.072 2.5E-06 61.8 10.0 23 203-225 110-132 (773)
291 1lvg_A Guanylate kinase, GMP k 94.8 0.014 4.8E-07 55.8 3.2 25 202-226 4-28 (198)
292 2pl3_A Probable ATP-dependent 94.8 0.1 3.5E-06 50.5 9.5 53 165-219 24-79 (236)
293 1j8m_F SRP54, signal recogniti 94.7 0.079 2.7E-06 54.2 8.9 35 202-236 98-135 (297)
294 3gmt_A Adenylate kinase; ssgci 94.7 0.013 4.6E-07 57.9 2.9 29 204-232 10-38 (230)
295 3b9q_A Chloroplast SRP recepto 94.6 0.039 1.3E-06 56.7 6.2 28 199-226 97-124 (302)
296 1c9k_A COBU, adenosylcobinamid 94.6 0.019 6.4E-07 54.7 3.4 32 205-237 2-33 (180)
297 3p32_A Probable GTPase RV1496/ 94.6 0.14 4.8E-06 53.5 10.5 25 202-226 79-103 (355)
298 1m8p_A Sulfate adenylyltransfe 94.6 0.054 1.8E-06 60.7 7.6 40 200-239 394-437 (573)
299 2oap_1 GSPE-2, type II secreti 94.5 0.014 5E-07 64.4 2.9 70 202-271 260-343 (511)
300 3lnc_A Guanylate kinase, GMP k 94.5 0.018 6.1E-07 56.1 3.1 25 202-226 27-52 (231)
301 3fe2_A Probable ATP-dependent 94.4 0.11 3.8E-06 50.7 8.8 55 164-220 27-84 (242)
302 1z6g_A Guanylate kinase; struc 94.3 0.022 7.7E-07 55.3 3.5 25 202-226 23-47 (218)
303 2ffh_A Protein (FFH); SRP54, s 94.3 0.48 1.6E-05 50.9 14.1 35 201-235 97-134 (425)
304 2jeo_A Uridine-cytidine kinase 94.3 0.021 7.2E-07 56.3 3.3 28 202-229 25-52 (245)
305 3bor_A Human initiation factor 94.3 0.14 4.7E-06 49.9 9.2 55 164-220 28-85 (237)
306 3pey_A ATP-dependent RNA helic 94.3 0.29 9.8E-06 50.5 12.1 55 166-222 5-64 (395)
307 1gtv_A TMK, thymidylate kinase 94.3 0.013 4.3E-07 56.0 1.6 24 204-227 2-25 (214)
308 1xti_A Probable ATP-dependent 94.3 0.41 1.4E-05 49.4 13.3 57 166-224 8-67 (391)
309 3tqc_A Pantothenate kinase; bi 94.3 0.076 2.6E-06 55.1 7.5 29 199-227 89-117 (321)
310 3hdt_A Putative kinase; struct 94.2 0.025 8.4E-07 55.6 3.5 30 203-232 15-44 (223)
311 3tqf_A HPR(Ser) kinase; transf 94.2 0.03 1E-06 53.0 3.8 28 203-231 17-44 (181)
312 1htw_A HI0065; nucleotide-bind 94.1 0.033 1.1E-06 51.7 4.0 24 203-226 34-57 (158)
313 1wp9_A ATP-dependent RNA helic 94.1 0.17 5.7E-06 53.4 10.0 33 204-236 25-61 (494)
314 2og2_A Putative signal recogni 94.1 0.054 1.8E-06 57.1 6.0 28 199-226 154-181 (359)
315 2orv_A Thymidine kinase; TP4A 94.1 0.18 6.2E-06 49.8 9.3 91 203-312 20-125 (234)
316 1a7j_A Phosphoribulokinase; tr 94.0 0.02 7E-07 58.4 2.6 37 202-238 5-44 (290)
317 1vec_A ATP-dependent RNA helic 94.0 0.21 7E-06 47.1 9.5 18 203-220 41-58 (206)
318 1znw_A Guanylate kinase, GMP k 94.0 0.031 1.1E-06 53.5 3.7 25 203-227 21-45 (207)
319 3thx_A DNA mismatch repair pro 94.0 0.12 4E-06 61.1 9.2 22 203-224 663-684 (934)
320 3vkw_A Replicase large subunit 94.0 0.11 3.7E-06 56.2 8.3 24 202-225 161-184 (446)
321 1bif_A 6-phosphofructo-2-kinas 94.0 0.12 4.1E-06 56.1 8.8 30 201-230 38-67 (469)
322 4eaq_A DTMP kinase, thymidylat 93.9 0.035 1.2E-06 54.5 4.0 31 202-232 26-58 (229)
323 2v9p_A Replication protein E1; 93.9 0.037 1.3E-06 57.1 4.0 29 199-227 123-151 (305)
324 1q0u_A Bstdead; DEAD protein, 93.8 0.22 7.4E-06 47.7 9.4 18 203-220 42-59 (219)
325 1s2m_A Putative ATP-dependent 93.8 0.3 1E-05 50.9 11.0 57 165-223 20-79 (400)
326 3ber_A Probable ATP-dependent 93.7 0.16 5.5E-06 50.0 8.5 55 164-220 41-98 (249)
327 1sq5_A Pantothenate kinase; P- 93.7 0.037 1.3E-06 56.7 3.8 27 201-227 79-105 (308)
328 1s96_A Guanylate kinase, GMP k 93.7 0.037 1.3E-06 54.1 3.6 26 202-227 16-41 (219)
329 2ged_A SR-beta, signal recogni 93.6 0.066 2.3E-06 49.8 5.1 47 174-226 26-72 (193)
330 1np6_A Molybdopterin-guanine d 93.5 0.045 1.5E-06 51.6 3.7 26 201-226 5-30 (174)
331 2gza_A Type IV secretion syste 93.5 0.046 1.6E-06 57.5 4.1 69 203-271 176-262 (361)
332 1wb9_A DNA mismatch repair pro 93.4 0.2 6.7E-06 58.3 9.6 24 202-225 607-630 (800)
333 3cr8_A Sulfate adenylyltranfer 93.4 0.12 4.1E-06 57.5 7.5 39 201-239 368-410 (552)
334 2j0s_A ATP-dependent RNA helic 93.4 0.25 8.6E-06 51.7 9.7 57 165-223 36-95 (410)
335 2ocp_A DGK, deoxyguanosine kin 93.4 0.051 1.7E-06 53.3 4.0 26 202-227 2-27 (241)
336 2z0m_A 337AA long hypothetical 93.2 0.2 6.9E-06 50.5 8.4 33 203-235 32-64 (337)
337 1p5z_B DCK, deoxycytidine kina 93.2 0.022 7.6E-07 56.7 1.1 31 201-231 23-54 (263)
338 1rj9_A FTSY, signal recognitio 93.2 0.055 1.9E-06 55.6 4.0 26 201-226 101-126 (304)
339 4f4c_A Multidrug resistance pr 93.1 0.42 1.4E-05 58.6 12.4 27 201-227 443-469 (1321)
340 2qm8_A GTPase/ATPase; G protei 93.0 0.17 5.9E-06 52.6 7.5 25 202-226 55-79 (337)
341 3lxx_A GTPase IMAP family memb 93.0 0.21 7.2E-06 48.6 7.8 23 203-225 30-52 (239)
342 1fuu_A Yeast initiation factor 93.0 0.3 1E-05 50.5 9.4 54 164-219 19-75 (394)
343 3aez_A Pantothenate kinase; tr 93.0 0.059 2E-06 55.6 3.9 27 200-226 88-114 (312)
344 3fmp_B ATP-dependent RNA helic 92.9 0.59 2E-05 50.3 12.0 54 164-219 90-148 (479)
345 1sky_E F1-ATPase, F1-ATP synth 92.9 0.18 6.3E-06 54.8 7.8 23 204-226 153-175 (473)
346 3eiq_A Eukaryotic initiation f 92.8 0.57 1.9E-05 48.8 11.4 55 165-221 39-96 (414)
347 3fht_A ATP-dependent RNA helic 92.8 0.47 1.6E-05 49.3 10.8 54 164-219 23-81 (412)
348 3iuy_A Probable ATP-dependent 92.8 0.12 4.2E-06 49.7 5.8 18 203-220 58-75 (228)
349 3ozx_A RNAse L inhibitor; ATP 92.8 0.25 8.4E-06 54.9 8.9 24 203-226 295-318 (538)
350 2p6r_A Afuhel308 helicase; pro 92.8 0.25 8.7E-06 56.2 9.3 32 203-234 41-75 (702)
351 1xjc_A MOBB protein homolog; s 92.8 0.066 2.3E-06 50.3 3.6 24 203-226 5-28 (169)
352 2fwr_A DNA repair protein RAD2 92.7 0.14 4.9E-06 55.0 6.7 33 204-236 110-142 (472)
353 4a2p_A RIG-I, retinoic acid in 92.5 0.53 1.8E-05 51.1 11.1 33 203-235 23-63 (556)
354 3q72_A GTP-binding protein RAD 92.5 0.074 2.5E-06 47.8 3.5 21 204-224 4-24 (166)
355 2gks_A Bifunctional SAT/APS ki 92.5 0.21 7.3E-06 55.5 7.8 39 201-239 371-412 (546)
356 3tbk_A RIG-I helicase domain; 92.4 0.82 2.8E-05 49.4 12.4 33 203-235 20-60 (555)
357 3e2i_A Thymidine kinase; Zn-bi 92.4 0.11 3.6E-06 50.9 4.6 68 204-273 30-113 (219)
358 3kta_A Chromosome segregation 92.3 0.086 2.9E-06 48.9 3.8 24 204-227 28-51 (182)
359 2va8_A SSO2462, SKI2-type heli 92.3 0.46 1.6E-05 54.1 10.5 21 202-222 46-66 (715)
360 1ewq_A DNA mismatch repair pro 92.2 0.27 9.3E-06 56.8 8.5 24 202-225 576-599 (765)
361 3ly5_A ATP-dependent RNA helic 92.2 0.26 8.8E-06 48.9 7.3 18 203-220 92-109 (262)
362 3lxw_A GTPase IMAP family memb 92.2 0.23 8E-06 48.9 7.0 25 201-225 20-44 (247)
363 1g8f_A Sulfate adenylyltransfe 92.1 0.09 3.1E-06 58.0 4.2 27 202-228 395-421 (511)
364 2zj8_A DNA helicase, putative 92.1 0.49 1.7E-05 54.0 10.5 18 202-219 39-56 (720)
365 1z2a_A RAS-related protein RAB 92.1 0.076 2.6E-06 47.7 3.0 23 203-225 6-28 (168)
366 1oix_A RAS-related protein RAB 92.1 0.076 2.6E-06 49.9 3.1 23 204-226 31-53 (191)
367 3h1t_A Type I site-specific re 92.1 0.25 8.6E-06 54.9 7.9 23 203-225 199-221 (590)
368 2f9l_A RAB11B, member RAS onco 92.1 0.077 2.6E-06 49.9 3.1 22 204-225 7-28 (199)
369 3b85_A Phosphate starvation-in 92.1 0.054 1.9E-06 52.5 2.1 22 204-225 24-45 (208)
370 3def_A T7I23.11 protein; chlor 92.1 0.4 1.4E-05 47.5 8.5 25 202-226 36-60 (262)
371 2pcj_A ABC transporter, lipopr 92.0 0.054 1.8E-06 53.0 2.0 24 203-226 31-54 (224)
372 2onk_A Molybdate/tungstate ABC 92.0 0.065 2.2E-06 53.1 2.6 24 203-226 25-48 (240)
373 3dz8_A RAS-related protein RAB 92.0 0.48 1.6E-05 43.9 8.6 24 203-226 24-47 (191)
374 4i1u_A Dephospho-COA kinase; s 92.0 0.086 2.9E-06 51.3 3.4 29 204-233 11-39 (210)
375 1svi_A GTP-binding protein YSX 91.9 0.074 2.5E-06 49.4 2.8 25 201-225 22-46 (195)
376 2p67_A LAO/AO transport system 91.9 0.34 1.2E-05 50.2 8.2 26 201-226 55-80 (341)
377 3tif_A Uncharacterized ABC tra 91.9 0.071 2.4E-06 52.6 2.7 24 203-226 32-55 (235)
378 3sop_A Neuronal-specific septi 91.9 0.084 2.9E-06 53.2 3.3 23 204-226 4-26 (270)
379 1nrj_B SR-beta, signal recogni 91.8 0.1 3.5E-06 49.6 3.8 25 202-226 12-36 (218)
380 2cbz_A Multidrug resistance-as 91.8 0.073 2.5E-06 52.6 2.7 25 202-226 31-55 (237)
381 4edh_A DTMP kinase, thymidylat 91.8 0.15 5.1E-06 49.5 4.9 32 202-233 6-40 (213)
382 2f1r_A Molybdopterin-guanine d 91.8 0.069 2.4E-06 50.1 2.4 25 203-227 3-27 (171)
383 3oiy_A Reverse gyrase helicase 91.7 0.13 4.6E-06 54.1 4.9 20 203-222 37-56 (414)
384 2dyk_A GTP-binding protein; GT 91.7 0.093 3.2E-06 46.8 3.1 22 204-225 3-24 (161)
385 3qf4_A ABC transporter, ATP-bi 91.6 0.52 1.8E-05 52.7 9.8 26 201-226 368-393 (587)
386 1lw7_A Transcriptional regulat 91.5 0.096 3.3E-06 54.9 3.4 28 202-229 170-197 (365)
387 1sgw_A Putative ABC transporte 91.4 0.071 2.4E-06 51.9 2.1 24 203-226 36-59 (214)
388 2ce2_X GTPase HRAS; signaling 91.3 0.11 3.7E-06 46.3 3.1 23 204-226 5-27 (166)
389 2v6i_A RNA helicase; membrane, 91.3 0.52 1.8E-05 50.5 9.0 21 203-223 3-24 (431)
390 1kao_A RAP2A; GTP-binding prot 91.3 0.11 3.8E-06 46.3 3.1 24 203-226 4-27 (167)
391 1b0u_A Histidine permease; ABC 91.2 0.09 3.1E-06 52.7 2.7 24 203-226 33-56 (262)
392 2gk6_A Regulator of nonsense t 91.2 0.093 3.2E-06 59.2 3.2 33 204-236 197-233 (624)
393 2d2e_A SUFC protein; ABC-ATPas 91.2 0.088 3E-06 52.3 2.6 23 203-225 30-52 (250)
394 1g6h_A High-affinity branched- 91.2 0.075 2.6E-06 53.1 2.1 24 203-226 34-57 (257)
395 2wsm_A Hydrogenase expression/ 91.2 0.18 6.2E-06 48.0 4.8 25 203-227 31-55 (221)
396 1mv5_A LMRA, multidrug resista 91.2 0.089 3E-06 52.1 2.6 24 203-226 29-52 (243)
397 3v9p_A DTMP kinase, thymidylat 91.2 0.15 5.1E-06 50.1 4.2 24 203-226 26-49 (227)
398 3tmk_A Thymidylate kinase; pho 91.1 0.2 7E-06 48.8 5.1 29 202-230 5-33 (216)
399 3lv8_A DTMP kinase, thymidylat 91.1 0.13 4.4E-06 50.9 3.7 26 201-226 26-51 (236)
400 1u8z_A RAS-related protein RAL 91.1 0.11 3.9E-06 46.3 3.0 23 203-225 5-27 (168)
401 1ji0_A ABC transporter; ATP bi 91.0 0.08 2.7E-06 52.3 2.1 24 203-226 33-56 (240)
402 3qf4_B Uncharacterized ABC tra 91.0 0.46 1.6E-05 53.2 8.6 26 201-226 380-405 (598)
403 2zu0_C Probable ATP-dependent 91.0 0.11 3.9E-06 52.1 3.2 23 203-225 47-69 (267)
404 2ghi_A Transport protein; mult 91.0 0.098 3.4E-06 52.4 2.7 25 202-226 46-70 (260)
405 1ek0_A Protein (GTP-binding pr 91.0 0.12 4.2E-06 46.3 3.1 23 204-226 5-27 (170)
406 2ff7_A Alpha-hemolysin translo 91.0 0.081 2.8E-06 52.6 2.1 24 203-226 36-59 (247)
407 3gfo_A Cobalt import ATP-bindi 91.0 0.081 2.8E-06 53.6 2.1 24 203-226 35-58 (275)
408 2pze_A Cystic fibrosis transme 91.0 0.082 2.8E-06 51.8 2.1 24 203-226 35-58 (229)
409 1z0j_A RAB-22, RAS-related pro 90.9 0.13 4.3E-06 46.3 3.1 24 203-226 7-30 (170)
410 1g16_A RAS-related protein SEC 90.9 0.12 4.3E-06 46.3 3.1 22 204-225 5-26 (170)
411 2olj_A Amino acid ABC transpor 90.8 0.1 3.6E-06 52.4 2.7 24 203-226 51-74 (263)
412 3fho_A ATP-dependent RNA helic 90.7 0.79 2.7E-05 50.0 10.0 19 202-220 158-176 (508)
413 2ixe_A Antigen peptide transpo 90.7 0.11 3.6E-06 52.5 2.7 24 203-226 46-69 (271)
414 2wji_A Ferrous iron transport 90.7 0.12 4.3E-06 46.9 3.0 22 204-225 5-26 (165)
415 1wms_A RAB-9, RAB9, RAS-relate 90.7 0.13 4.5E-06 46.7 3.1 23 203-225 8-30 (177)
416 2zej_A Dardarin, leucine-rich 90.7 0.1 3.5E-06 48.4 2.4 21 204-224 4-24 (184)
417 1z08_A RAS-related protein RAB 90.7 0.13 4.5E-06 46.2 3.1 23 203-225 7-29 (170)
418 2qi9_C Vitamin B12 import ATP- 90.7 0.09 3.1E-06 52.4 2.1 24 203-226 27-50 (249)
419 2hf9_A Probable hydrogenase ni 90.6 0.25 8.6E-06 47.2 5.2 24 203-226 39-62 (226)
420 4a82_A Cystic fibrosis transme 90.6 0.47 1.6E-05 52.9 8.2 25 202-226 367-391 (578)
421 2nzj_A GTP-binding protein REM 90.6 0.13 4.4E-06 46.6 3.0 23 203-225 5-27 (175)
422 2atv_A RERG, RAS-like estrogen 90.6 0.15 5.1E-06 47.6 3.5 24 202-225 28-51 (196)
423 1upt_A ARL1, ADP-ribosylation 90.6 0.17 5.7E-06 45.6 3.7 24 202-225 7-30 (171)
424 1ky3_A GTP-binding protein YPT 90.6 0.13 4.5E-06 46.8 3.0 24 202-225 8-31 (182)
425 2lkc_A Translation initiation 90.6 0.15 5E-06 46.4 3.3 24 202-225 8-31 (178)
426 2it1_A 362AA long hypothetical 90.6 0.11 3.6E-06 54.9 2.6 24 203-226 30-53 (362)
427 2p5s_A RAS and EF-hand domain 90.6 0.15 5E-06 47.9 3.4 25 201-225 27-51 (199)
428 2yyz_A Sugar ABC transporter, 90.6 0.11 3.6E-06 54.8 2.6 24 203-226 30-53 (359)
429 3ld9_A DTMP kinase, thymidylat 90.6 0.16 5.4E-06 49.8 3.7 27 201-227 20-46 (223)
430 1oyw_A RECQ helicase, ATP-depe 90.5 0.35 1.2E-05 53.2 7.0 22 203-224 41-62 (523)
431 2ihy_A ABC transporter, ATP-bi 90.5 0.093 3.2E-06 53.2 2.1 24 203-226 48-71 (279)
432 1r2q_A RAS-related protein RAB 90.5 0.14 4.9E-06 45.8 3.1 23 203-225 7-29 (170)
433 3d31_A Sulfate/molybdate ABC t 90.5 0.095 3.2E-06 54.9 2.2 24 203-226 27-50 (348)
434 2b6h_A ADP-ribosylation factor 90.5 0.18 6.3E-06 47.1 4.0 25 200-224 27-51 (192)
435 2gj8_A MNME, tRNA modification 90.5 0.13 4.4E-06 47.3 2.9 23 203-225 5-27 (172)
436 1c1y_A RAS-related protein RAP 90.5 0.14 4.9E-06 45.7 3.1 22 204-225 5-26 (167)
437 1vpl_A ABC transporter, ATP-bi 90.5 0.12 4E-06 51.8 2.7 24 203-226 42-65 (256)
438 2oca_A DAR protein, ATP-depend 90.4 0.55 1.9E-05 50.9 8.3 33 203-235 129-165 (510)
439 3ice_A Transcription terminati 90.4 0.47 1.6E-05 50.5 7.4 24 203-226 175-198 (422)
440 2yz2_A Putative ABC transporte 90.4 0.12 4E-06 51.9 2.7 24 203-226 34-57 (266)
441 3ch4_B Pmkase, phosphomevalona 90.4 0.13 4.6E-06 49.6 3.0 40 198-237 7-47 (202)
442 2erx_A GTP-binding protein DI- 90.4 0.12 4.3E-06 46.3 2.6 22 204-225 5-26 (172)
443 1g29_1 MALK, maltose transport 90.3 0.11 3.9E-06 54.8 2.6 24 203-226 30-53 (372)
444 2nq2_C Hypothetical ABC transp 90.3 0.1 3.4E-06 52.1 2.1 24 203-226 32-55 (253)
445 1r8s_A ADP-ribosylation factor 90.3 0.15 5.2E-06 45.6 3.1 22 204-225 2-23 (164)
446 2wjg_A FEOB, ferrous iron tran 90.3 0.13 4.3E-06 47.5 2.6 23 203-225 8-30 (188)
447 3bc1_A RAS-related protein RAB 90.3 0.15 5.1E-06 46.8 3.1 23 203-225 12-34 (195)
448 4a2q_A RIG-I, retinoic acid in 90.2 1.2 4.1E-05 51.5 11.4 33 203-235 264-304 (797)
449 3q85_A GTP-binding protein REM 90.2 0.15 5E-06 45.9 3.0 21 204-224 4-24 (169)
450 2y8e_A RAB-protein 6, GH09086P 90.2 0.15 5.3E-06 46.1 3.1 23 203-225 15-37 (179)
451 3dkp_A Probable ATP-dependent 90.2 1.1 3.9E-05 43.2 9.6 17 203-219 67-83 (245)
452 1moz_A ARL1, ADP-ribosylation 90.2 0.17 5.7E-06 46.3 3.3 25 200-224 16-40 (183)
453 3cph_A RAS-related protein SEC 90.1 0.17 5.9E-06 47.6 3.4 24 202-225 20-43 (213)
454 2pjz_A Hypothetical protein ST 90.1 0.11 3.7E-06 52.3 2.1 24 203-226 31-54 (263)
455 2hxs_A RAB-26, RAS-related pro 90.1 0.15 5E-06 46.4 2.8 23 203-225 7-29 (178)
456 3clv_A RAB5 protein, putative; 90.0 0.19 6.5E-06 46.4 3.6 24 202-225 7-30 (208)
457 1z0f_A RAB14, member RAS oncog 90.0 0.17 5.7E-06 45.9 3.1 24 203-226 16-39 (179)
458 2fn4_A P23, RAS-related protei 89.9 0.17 5.7E-06 46.0 3.1 23 203-225 10-32 (181)
459 3sqw_A ATP-dependent RNA helic 89.9 0.58 2E-05 51.9 8.1 17 202-218 60-76 (579)
460 1oxx_K GLCV, glucose, ABC tran 89.9 0.096 3.3E-06 55.0 1.6 23 203-225 32-54 (353)
461 1ko7_A HPR kinase/phosphatase; 89.8 0.2 6.7E-06 51.8 3.8 29 202-231 144-172 (314)
462 2bme_A RAB4A, RAS-related prot 89.8 0.17 5.9E-06 46.4 3.1 23 203-225 11-33 (186)
463 1m7b_A RND3/RHOE small GTP-bin 89.8 0.17 5.7E-06 46.8 3.0 23 203-225 8-30 (184)
464 3con_A GTPase NRAS; structural 89.8 0.17 5.9E-06 46.7 3.1 24 203-226 22-45 (190)
465 2o8b_B DNA mismatch repair pro 89.7 1.1 3.7E-05 53.5 10.6 22 202-223 789-810 (1022)
466 2a9k_A RAS-related protein RAL 89.7 0.18 6.1E-06 46.1 3.1 23 203-225 19-41 (187)
467 2oil_A CATX-8, RAS-related pro 89.7 0.18 6E-06 46.8 3.1 23 203-225 26-48 (193)
468 3t1o_A Gliding protein MGLA; G 89.7 0.18 6E-06 46.6 3.1 24 203-226 15-38 (198)
469 2efe_B Small GTP-binding prote 89.7 0.18 6.1E-06 46.0 3.1 23 203-225 13-35 (181)
470 4dsu_A GTPase KRAS, isoform 2B 89.7 0.16 5.4E-06 46.6 2.8 24 203-226 5-28 (189)
471 3dmq_A RNA polymerase-associat 89.6 0.63 2.2E-05 55.2 8.5 41 202-242 170-215 (968)
472 3gd7_A Fusion complex of cysti 89.6 0.14 4.7E-06 54.5 2.6 23 203-225 48-70 (390)
473 2vp4_A Deoxynucleoside kinase; 89.6 0.18 6.2E-06 49.0 3.3 24 202-225 20-43 (230)
474 1yrb_A ATP(GTP)binding protein 89.5 0.34 1.2E-05 47.4 5.2 35 200-234 12-48 (262)
475 1knx_A Probable HPR(Ser) kinas 89.5 0.19 6.5E-06 51.8 3.4 29 202-231 147-175 (312)
476 1mh1_A RAC1; GTP-binding, GTPa 89.5 0.19 6.3E-06 46.0 3.0 23 203-225 6-28 (186)
477 3tw8_B RAS-related protein RAB 89.4 0.17 5.9E-06 45.9 2.8 22 203-224 10-31 (181)
478 2wjy_A Regulator of nonsense t 89.4 0.16 5.6E-06 59.0 3.2 22 204-225 373-394 (800)
479 2g6b_A RAS-related protein RAB 89.3 0.2 6.9E-06 45.5 3.1 25 202-226 10-34 (180)
480 3kkq_A RAS-related protein M-R 89.2 0.2 7E-06 45.8 3.1 23 203-225 19-41 (183)
481 1ksh_A ARF-like protein 2; sma 89.2 0.21 7.1E-06 46.0 3.2 25 201-225 17-41 (186)
482 3pqc_A Probable GTP-binding pr 89.2 0.16 5.4E-06 46.9 2.3 23 203-225 24-46 (195)
483 1m2o_B GTP-binding protein SAR 89.2 0.22 7.5E-06 46.5 3.4 23 203-225 24-46 (190)
484 2npi_A Protein CLP1; CLP1-PCF1 89.2 0.18 6.2E-06 54.8 3.1 24 203-226 139-162 (460)
485 3bwd_D RAC-like GTP-binding pr 89.1 0.25 8.6E-06 45.0 3.7 24 202-225 8-31 (182)
486 2gf9_A RAS-related protein RAB 89.1 0.21 7.1E-06 46.2 3.1 24 203-226 23-46 (189)
487 4a2w_A RIG-I, retinoic acid in 89.1 1.7 5.7E-05 51.4 11.6 33 203-235 264-304 (936)
488 2cxx_A Probable GTP-binding pr 89.1 0.2 6.7E-06 46.1 2.9 22 204-225 3-24 (190)
489 2bbs_A Cystic fibrosis transme 89.0 0.18 6E-06 51.5 2.7 24 203-226 65-88 (290)
490 1nij_A Hypothetical protein YJ 89.0 0.34 1.2E-05 49.8 4.9 23 204-226 6-28 (318)
491 3tkl_A RAS-related protein RAB 88.9 0.22 7.4E-06 46.1 3.1 24 203-226 17-40 (196)
492 4tmk_A Protein (thymidylate ki 88.9 0.21 7.2E-06 48.5 3.1 24 203-226 4-27 (213)
493 2e87_A Hypothetical protein PH 88.9 1.2 4.1E-05 46.3 9.2 25 201-225 166-190 (357)
494 2f7s_A C25KG, RAS-related prot 88.9 0.84 2.9E-05 43.1 7.3 22 204-225 27-48 (217)
495 4ag6_A VIRB4 ATPase, type IV s 88.8 0.36 1.2E-05 50.9 5.1 24 202-225 35-58 (392)
496 1fzq_A ADP-ribosylation factor 88.8 0.28 9.7E-06 45.3 3.8 24 202-225 16-39 (181)
497 1tq4_A IIGP1, interferon-induc 88.8 0.27 9.3E-06 52.7 4.1 22 204-225 71-92 (413)
498 2fg5_A RAB-22B, RAS-related pr 88.8 0.22 7.7E-06 46.3 3.1 24 203-226 24-47 (192)
499 1x3s_A RAS-related protein RAB 88.8 0.23 7.8E-06 45.8 3.1 23 203-225 16-38 (195)
500 2iwr_A Centaurin gamma 1; ANK 88.7 0.18 6.2E-06 45.9 2.4 23 203-225 8-30 (178)
No 1
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=3.7e-87 Score=736.13 Aligned_cols=444 Identities=52% Similarity=0.853 Sum_probs=383.2
Q ss_pred CCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhhh
Q 007190 163 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMF 242 (613)
Q Consensus 163 ~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~~ 242 (613)
.+.++|+||+|++++|+++++++.++++|..|.++|.++|+|+||+||||||||++|+++|++++.||++++++++.+.|
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 56689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccC----CcccHHHHHHHHHHhhccccCCceEEEeecCCCCCCCh
Q 007190 243 VGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDP 318 (613)
Q Consensus 243 ~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~----~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~ 318 (613)
.|.+..+++.+|..|+..+||||||||+|.++.+++.. .....+++++|+.+|+++..+.+++||++||+|+.||+
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~ 169 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDP 169 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCG
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhch
Confidence 99999999999999999999999999999998876532 22346789999999999988889999999999999999
Q ss_pred hhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHH
Q 007190 319 ALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATEL 398 (613)
Q Consensus 319 aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl 398 (613)
+++||||||+.+.+++|+.++|.+|++.|+++.++.+++++..++..++|++|+||.++|++|+..|.+++...|+.+|+
T Consensus 170 allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl 249 (476)
T 2ce7_A 170 ALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDF 249 (476)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHH
T ss_pred hhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecHHHH
Confidence 99999999999999999999999999999999888888999999999999999999999999999999999899999999
Q ss_pred HHHHHHHhcCCccccccchhhhHHHHHHHHhhhHHHHHhcCCCCCeEEEEEeecC-CccceEEeccCCCcccccHHHHHH
Q 007190 399 EFAKDRILMGTERKTMFISEESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPRG-SALGMVTQLPSSDETSVSQKQLLA 477 (613)
Q Consensus 399 ~~A~~~v~~g~~~~~~~~~~~~~~~~A~hEaGhAlva~~~~~~~~v~~vti~prg-~~~G~~~~~~~~~~~~~t~~~~~~ 477 (613)
..|++++++|.++++..+++++++++||||+|||++++.+++.+|+++++|+||| .++||+++.|.++.+++||.+|++
T Consensus 250 ~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~G~a~~~~~l~~~~~~~~~~i~prg~~alg~~~~~p~~~~~~~~~~~l~~ 329 (476)
T 2ce7_A 250 EEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGYTLHLPEEDKYLVSRNELLD 329 (476)
T ss_dssp HHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHSTTCCCCCEEECC-----------------CCSCBHHHHHH
T ss_pred HHHHHHHhcCccccchhhhcchhhhhHHHHhhhHHHhhccCCccccceeeeecCcccccceEEEcCcccccccCHHHHHH
Confidence 9999999999888888889999999999999999999999999999999999999 899999999999999999999999
Q ss_pred hhHHHccHHHHHHHHhCCCCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCcccccC---------------CCChhhHHH
Q 007190 478 RLDVCMGGRVAEELIFGRDHITTGASSDLHSATELAHYMVSNCGMSDAIGPVHIKD---------------RPSSEMQSR 542 (613)
Q Consensus 478 ~i~~~l~GraAE~~~~g~~~~~~ga~~Dl~~at~~a~~mv~~~Gm~~~~g~~~~~~---------------~~~~~~~~~ 542 (613)
+|++||||||||+++|| ++||||+|||++||++|+.||++||||+++|++.+.. ..|++++..
T Consensus 330 ~i~~~l~Gr~ae~~~~g--~~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 407 (476)
T 2ce7_A 330 KLTALLGGRAAEEVVFG--DVTSGAANDIERATEIARNMVCQLGMSEELGPLAWGKEEQEVFLGKEITRLRNYSEEVASK 407 (476)
T ss_dssp HHHHHTHHHHHHHHHHS--SCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC-------------CCCSCHHHHHH
T ss_pred HHHHHHhHHHHHhhhcC--CCCcccHHHHHHHHHHHHHHHHHhCCCCcCCceeecCCCccccccccccccccccHHHHHH
Confidence 99999999999999999 4899999999999999999999999999999988753 247889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHhhccCcCCCCCchhhhhcc
Q 007190 543 IDAEVVKLLREAYDRVKALLKKHEKQLHALANALLEYETLSAEEIKRILLPYREGQLPEQQEELEE 608 (613)
Q Consensus 543 id~ev~~~l~~~~~~a~~iL~~~r~~l~~la~~Lle~etL~~~ei~~i~~~~~~~~~~~~~~~~~~ 608 (613)
||.||+++|+++|++|++||++||+.|++||++|+|+|||+++||++|+.+.-......+++++++
T Consensus 408 ~~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (476)
T 2ce7_A 408 IDEEVKKIVTNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDELRRILSEEFEKVVEAAALEHHH 473 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEEEHHHHHHHTC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCeeCHHHHHHHhcccccchhHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999987334444445555543
No 2
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=1.2e-83 Score=711.87 Aligned_cols=430 Identities=52% Similarity=0.841 Sum_probs=405.2
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhhhh
Q 007190 164 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFV 243 (613)
Q Consensus 164 ~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~~~ 243 (613)
+.++|+||+|++++|+++++++.+++++..|..++.++|+|+||+||||||||+||+++|++++.||++++++++.+.+.
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~ 105 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 105 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCT
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhh
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccC----CcccHHHHHHHHHHhhccccCCceEEEeecCCCCCCChh
Q 007190 244 GVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPA 319 (613)
Q Consensus 244 g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~----~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~a 319 (613)
+...++++.+|..++...|||+||||||.++..++.. .....+++++++.+|+++..+..++++++||+|+.||++
T Consensus 106 g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~a 185 (499)
T 2dhr_A 106 GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPA 185 (499)
T ss_dssp THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTT
T ss_pred hhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcc
Confidence 9999999999999988889999999999998766531 223467899999999999888889999999999999999
Q ss_pred hcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 007190 320 LTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELE 399 (613)
Q Consensus 320 LlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~ 399 (613)
++||||||+++.+++|+.++|.+||+.|+++.++.+++++..++..++|++|+||+++|++|+..|.+++...|+.+|++
T Consensus 186 Llr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~ 265 (499)
T 2dhr_A 186 LLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLE 265 (499)
T ss_dssp TSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHHH
T ss_pred cccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Confidence 99999999999999999999999999999988888899999999999999999999999999999998888899999999
Q ss_pred HHHHHHhcCCccccccchhhhHHHHHHHHhhhHHHHHhcCCCCCeEEEEEeecCCccceEEeccC-CCcccccHHHHHHh
Q 007190 400 FAKDRILMGTERKTMFISEESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPRGSALGMVTQLPS-SDETSVSQKQLLAR 478 (613)
Q Consensus 400 ~A~~~v~~g~~~~~~~~~~~~~~~~A~hEaGhAlva~~~~~~~~v~~vti~prg~~~G~~~~~~~-~~~~~~t~~~~~~~ 478 (613)
+|++++.+|.++++..+++++++++||||+|||++++++++.++|+++||+|||+++||++ |. ++.+++||.+++++
T Consensus 266 ~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~av~~~~l~~~~~v~~~~i~pr~~~~g~~~--p~q~~~~~~t~~~l~~~ 343 (499)
T 2dhr_A 266 EAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADGVHKVTIVPRGRALGFMM--PRREDMLHWSRKRLLDQ 343 (499)
T ss_dssp HHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHHHHHHCCSSSCCCCCCEESCCSSCTTCSSH--HHHTTCCCCCHHHHHHH
T ss_pred HHHHHHhcccccccchhhHHHHhhhHHHHHHHHHHHhhcCCCCeeeEEEeecCCCcCcccc--cchhhhhccCHHHHHHH
Confidence 9999999999888888999999999999999999999999999999999999999999987 76 78889999999999
Q ss_pred hHHHccHHHHHHHHhCCCCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCcccccC------------CCChhhHHHHHHH
Q 007190 479 LDVCMGGRVAEELIFGRDHITTGASSDLHSATELAHYMVSNCGMSDAIGPVHIKD------------RPSSEMQSRIDAE 546 (613)
Q Consensus 479 i~~~l~GraAE~~~~g~~~~~~ga~~Dl~~at~~a~~mv~~~Gm~~~~g~~~~~~------------~~~~~~~~~id~e 546 (613)
|+++|||||||+++|| ++||||+|||++||+||+.||++||||+++|++.+.. ..|++++..||.|
T Consensus 344 i~~~lgGr~ae~~~~g--~~~~ga~~Dl~~at~~a~~mv~~~gm~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 421 (499)
T 2dhr_A 344 IAVALAGRAAEEIVFD--DVTTGAENDFRQATELARRMITEWGMHPEFGPVAYAVREDTYLGGYDVRQYSEETAKRIDEA 421 (499)
T ss_dssp HHHHHHHHHHHHHHSC--SCCBCCCHHHHHHHHHHHHHHTTSCCCSSSCSCCCCCCCCCSSCCCCCCCCCHHHHHHHHHH
T ss_pred HHHHhhhHhHHHhhhc--ccCcccHHHHHHHHHHHHHHHHHhCCCCCCCceeecCCCccccccccccccCHHHHHHHHHH
Confidence 9999999999999999 4899999999999999999999999999999988753 2478899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHhhccCcCC
Q 007190 547 VVKLLREAYDRVKALLKKHEKQLHALANALLEYETLSAEEIKRILLPYREG 597 (613)
Q Consensus 547 v~~~l~~~~~~a~~iL~~~r~~l~~la~~Lle~etL~~~ei~~i~~~~~~~ 597 (613)
|+++|+++|++|++||++||+.|++||++|+|+|||+++||++|+.+....
T Consensus 422 v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e~l~~~~~~~~~~~~~~~ 472 (499)
T 2dhr_A 422 VRRLIEEQYQRVKALLLEKREVLERVAETLLERETLTAEEFQRVVEGLPLE 472 (499)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHhccCCCC
Confidence 999999999999999999999999999999999999999999999876443
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.4e-54 Score=458.43 Aligned_cols=253 Identities=38% Similarity=0.634 Sum_probs=239.4
Q ss_pred cccCCCCCCCCcccCCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecc
Q 007190 158 EVMPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGS 236 (613)
Q Consensus 158 ~~~~~~~~~~f~dV~G~~e~k~~L~eiv~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s 236 (613)
....+.|.++|+||+|++++|++|++.+.+ +++|+.|.++|.++|+|+|||||||||||++|+|+|++++.||+.++++
T Consensus 137 ~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s 216 (405)
T 4b4t_J 137 MMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGA 216 (405)
T ss_dssp CEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred ccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhH
Confidence 344567889999999999999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCc----ccHHHHHHHHHHhhccccCCceEEEeecCC
Q 007190 237 EFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG----HTKKTLHQLLVEMDGFEQNEGIILMAATNL 312 (613)
Q Consensus 237 ~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~----~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~ 312 (613)
++.++|+|++++.++.+|..|+..+||||||||||+++++|....+ ...+++++||.+||++..+.+|+||+|||+
T Consensus 217 ~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNr 296 (405)
T 4b4t_J 217 ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNR 296 (405)
T ss_dssp GGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESC
T ss_pred HhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCC
Confidence 9999999999999999999999999999999999999988764332 346789999999999999999999999999
Q ss_pred CCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCc
Q 007190 313 PDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEK 392 (613)
Q Consensus 313 p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~ 392 (613)
|+.||||++||||||+.|+||+||.++|.+||+.|+++.++..++|+..+|+.|+||||+||.++|++|++.|.++++..
T Consensus 297 pd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~ 376 (405)
T 4b4t_J 297 LDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIH 376 (405)
T ss_dssp SSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSB
T ss_pred hhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHhcCCc
Q 007190 393 LTATELEFAKDRILMGTE 410 (613)
Q Consensus 393 It~~dl~~A~~~v~~g~~ 410 (613)
|+.+||+.|+++++....
T Consensus 377 vt~~Df~~Al~~v~~~~~ 394 (405)
T 4b4t_J 377 VTQEDFELAVGKVMNKNQ 394 (405)
T ss_dssp CCHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHhCccc
Confidence 999999999999876543
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-52 Score=448.02 Aligned_cols=251 Identities=36% Similarity=0.637 Sum_probs=238.4
Q ss_pred ccCCCCCCCCcccCCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecch
Q 007190 159 VMPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE 237 (613)
Q Consensus 159 ~~~~~~~~~f~dV~G~~e~k~~L~eiv~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~ 237 (613)
...+.+.++|+||+|++++|++|++.+.+ +++|+.|..+|.++|+|+|||||||||||++|+|+|++++.+|+.+++++
T Consensus 172 ~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~ 251 (437)
T 4b4t_I 172 KMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSE 251 (437)
T ss_dssp EEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGG
T ss_pred eeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHH
Confidence 34567889999999999999999999988 99999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCC----cccHHHHHHHHHHhhccccCCceEEEeecCCC
Q 007190 238 FEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFEQNEGIILMAATNLP 313 (613)
Q Consensus 238 ~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~----~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p 313 (613)
+.++|+|++++.++.+|..|+..+||||||||+|+++.+|.... ....+++++||.+||++..+.+|+||+|||+|
T Consensus 252 l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrp 331 (437)
T 4b4t_I 252 LIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKI 331 (437)
T ss_dssp GCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCS
T ss_pred hhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCCh
Confidence 99999999999999999999999999999999999999885432 23467899999999999999999999999999
Q ss_pred CCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCcc
Q 007190 314 DILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKL 393 (613)
Q Consensus 314 ~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~I 393 (613)
+.||||++||||||++|+|++||.++|.+||+.|+++.++..++|+..||+.|+||||+||.++|++|++.|.++++..|
T Consensus 332 d~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~I 411 (437)
T 4b4t_I 332 ETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQV 411 (437)
T ss_dssp TTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCB
T ss_pred hhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcCC
Q 007190 394 TATELEFAKDRILMGT 409 (613)
Q Consensus 394 t~~dl~~A~~~v~~g~ 409 (613)
+.+||..|++++..+.
T Consensus 412 t~eDf~~Al~rv~~~~ 427 (437)
T 4b4t_I 412 TAEDFKQAKERVMKNK 427 (437)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCC
Confidence 9999999999997754
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8e-52 Score=448.63 Aligned_cols=252 Identities=40% Similarity=0.636 Sum_probs=239.0
Q ss_pred CCCCCCCCcccCCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhh
Q 007190 161 PEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 239 (613)
Q Consensus 161 ~~~~~~~f~dV~G~~e~k~~L~eiv~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~ 239 (613)
.+.|.++|+||+|++++|++|++.+.+ +++|+.|.++|.++|+|+|||||||||||++|+|+|++++.||+.++++++.
T Consensus 201 ~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~ 280 (467)
T 4b4t_H 201 EEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELV 280 (467)
T ss_dssp ESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhh
Confidence 357789999999999999999999888 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCc----ccHHHHHHHHHHhhccccCCceEEEeecCCCCC
Q 007190 240 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG----HTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 315 (613)
Q Consensus 240 ~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~----~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~ 315 (613)
++|+|.+++.++.+|..|+..+||||||||+|+++.+|..... ....+++++|.+||++..+.+|+||+|||+|+.
T Consensus 281 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~ 360 (467)
T 4b4t_H 281 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNT 360 (467)
T ss_dssp CCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTS
T ss_pred cccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCccc
Confidence 9999999999999999999999999999999999988864322 236788999999999999999999999999999
Q ss_pred CChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Q 007190 316 LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTA 395 (613)
Q Consensus 316 Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~ 395 (613)
||+|++||||||++|+|++|+.++|.+||+.|+++.++..++|+..||+.|+||||+||.++|++|++.|.++++..|+.
T Consensus 361 LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~ 440 (467)
T 4b4t_H 361 LDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATE 440 (467)
T ss_dssp BCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCH
T ss_pred CChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCccc
Q 007190 396 TELEFAKDRILMGTERK 412 (613)
Q Consensus 396 ~dl~~A~~~v~~g~~~~ 412 (613)
+||..|+++++.|.+++
T Consensus 441 ~Df~~Al~kV~~g~~k~ 457 (467)
T 4b4t_H 441 KDFLKAVDKVISGYKKF 457 (467)
T ss_dssp HHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHhcCcccc
Confidence 99999999999887654
No 6
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-51 Score=443.00 Aligned_cols=249 Identities=40% Similarity=0.645 Sum_probs=236.4
Q ss_pred cCCCCCCCCcccCCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchh
Q 007190 160 MPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 238 (613)
Q Consensus 160 ~~~~~~~~f~dV~G~~e~k~~L~eiv~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~ 238 (613)
..+.+.++|+||+|++++|++|++.+.+ +++|+.|.++|.++|+|+|||||||||||++|+|+|+++++||+.++++++
T Consensus 172 ~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l 251 (437)
T 4b4t_L 172 SFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGI 251 (437)
T ss_dssp EEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGT
T ss_pred eccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhh
Confidence 3457789999999999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCC----cccHHHHHHHHHHhhccccCCceEEEeecCCCC
Q 007190 239 EEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD 314 (613)
Q Consensus 239 ~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~----~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~ 314 (613)
.++|+|.+++.++.+|..|+..+||||||||+|+++.+|.... .....++++||.+|||+....+|+||+|||+|+
T Consensus 252 ~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~ 331 (437)
T 4b4t_L 252 VDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPD 331 (437)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTT
T ss_pred ccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCch
Confidence 9999999999999999999999999999999999998885432 234678999999999999999999999999999
Q ss_pred CCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccC
Q 007190 315 ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLT 394 (613)
Q Consensus 315 ~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It 394 (613)
.||||++||||||++|+||+||.++|.+||+.|+++.++..++|+..+|+.|+||||+||.++|++|++.|.+++...|+
T Consensus 332 ~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~ 411 (437)
T 4b4t_L 332 TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHIN 411 (437)
T ss_dssp SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred hhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 007190 395 ATELEFAKDRILMG 408 (613)
Q Consensus 395 ~~dl~~A~~~v~~g 408 (613)
.+||..|++++...
T Consensus 412 ~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 412 PDDLMKAVRKVAEV 425 (437)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998754
No 7
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-51 Score=444.76 Aligned_cols=248 Identities=39% Similarity=0.623 Sum_probs=235.0
Q ss_pred CCCCCCCCcccCCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhh
Q 007190 161 PEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 239 (613)
Q Consensus 161 ~~~~~~~f~dV~G~~e~k~~L~eiv~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~ 239 (613)
.+.+.++|+||+|++++|++|++.+.+ +++|+.|.++|.++|+|+|||||||||||++|+|+|++++.||+.++++++.
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh
Confidence 456788999999999999999998766 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCc----ccHHHHHHHHHHhhccccCCceEEEeecCCCCC
Q 007190 240 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG----HTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 315 (613)
Q Consensus 240 ~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~----~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~ 315 (613)
.+|+|.+++.++.+|..|+..+||||||||+|+++++|..... ....++++||.+||++..+.+|+||+|||+|+.
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~ 332 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDV 332 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCC
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchh
Confidence 9999999999999999999999999999999999988854322 235788999999999999999999999999999
Q ss_pred CChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Q 007190 316 LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTA 395 (613)
Q Consensus 316 Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~ 395 (613)
||||++||||||++|+||+||.++|.+||+.|+++.++..++|+..||+.|+||||+||.++|++|++.|.+++...|+.
T Consensus 333 LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~ 412 (434)
T 4b4t_M 333 LDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKH 412 (434)
T ss_dssp CCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCH
T ss_pred cCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC
Q 007190 396 TELEFAKDRILMG 408 (613)
Q Consensus 396 ~dl~~A~~~v~~g 408 (613)
+||..|++++.+.
T Consensus 413 ~Df~~Al~~v~~~ 425 (434)
T 4b4t_M 413 EDFVEGISEVQAR 425 (434)
T ss_dssp HHHHHHHHSCSSS
T ss_pred HHHHHHHHHHhCC
Confidence 9999999987654
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-50 Score=434.20 Aligned_cols=247 Identities=37% Similarity=0.583 Sum_probs=234.1
Q ss_pred CCCCCCCCcccCCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhh
Q 007190 161 PEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 239 (613)
Q Consensus 161 ~~~~~~~f~dV~G~~e~k~~L~eiv~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~ 239 (613)
.+.+.++|+||+|++++|++|++.+.+ +++|+.|.++|.++|+|+|||||||||||++|+|+|+++++||+.++++++.
T Consensus 164 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~ 243 (428)
T 4b4t_K 164 NEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFV 243 (428)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred CCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhh
Confidence 456789999999999999999998887 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCC----cccHHHHHHHHHHhhccccCCceEEEeecCCCCC
Q 007190 240 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 315 (613)
Q Consensus 240 ~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~----~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~ 315 (613)
++|+|.+++.++.+|..|+..+||||||||+|+++.+|.... ....+++++||.+|||+....+|+||+|||+|+.
T Consensus 244 ~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~ 323 (428)
T 4b4t_K 244 HKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADT 323 (428)
T ss_dssp CSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSS
T ss_pred ccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhh
Confidence 999999999999999999999999999999999998875432 2346789999999999999999999999999999
Q ss_pred CChhhcCCCccceEEEcc-CCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccC
Q 007190 316 LDPALTRPGRFDRHIVVP-NPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLT 394 (613)
Q Consensus 316 Ld~aLlRpgRFd~~I~v~-~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It 394 (613)
||||++||||||+.|+|| +|+.++|..||+.|+++.++..++|+..+|..|+||||+||.++|++|++.|.++++..|+
T Consensus 324 LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~ 403 (428)
T 4b4t_K 324 LDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVIL 403 (428)
T ss_dssp CCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred cChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
Confidence 999999999999999997 8999999999999999999989999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 007190 395 ATELEFAKDRILM 407 (613)
Q Consensus 395 ~~dl~~A~~~v~~ 407 (613)
.+||+.|+.+++.
T Consensus 404 ~~d~~~A~~~~~~ 416 (428)
T 4b4t_K 404 QSDLEEAYATQVK 416 (428)
T ss_dssp HHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhhC
Confidence 9999999988754
No 9
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1
Probab=100.00 E-value=3.5e-50 Score=402.05 Aligned_cols=189 Identities=40% Similarity=0.662 Sum_probs=157.1
Q ss_pred hcCCccccccchhhhHHHHHHHHhhhHHHHHhcCCCCCeEEEEEeecCCccceEEeccCCCcccccHHHHHHhhHHHccH
Q 007190 406 LMGTERKTMFISEESKKLTAYHESGHAIVAFNTEGAHPIHKATIMPRGSALGMVTQLPSSDETSVSQKQLLARLDVCMGG 485 (613)
Q Consensus 406 ~~g~~~~~~~~~~~~~~~~A~hEaGhAlva~~~~~~~~v~~vti~prg~~~G~~~~~~~~~~~~~t~~~~~~~i~~~l~G 485 (613)
++|.++++..+++++|+++||||||||||++++++.+||+||||+|||+++|||++.|.++.+++||.+|+++|+++|||
T Consensus 1 ~~G~ekk~~~~s~~ek~~vAyHEAGHAlva~~l~~~~pV~KVTIiPRG~alG~t~~~P~ed~~~~tk~~l~~~i~v~LgG 80 (238)
T 2di4_A 1 FQGPLGSHMTISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPRGMALGVTQQLPIEDKHIYDKKDLYNKILVLLGG 80 (238)
T ss_dssp ---------CCCHHHHHHHHHHHHHHHHHHHHCSSCCCCCCEECC----------------CCCCBHHHHHHHHHHHHHH
T ss_pred CCCccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEeecCCcceEEEeCCcccccccCHHHHHHHHHHHHhH
Confidence 46888998899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCcccccC-------------CCChhhHHHHHHHHHHHHH
Q 007190 486 RVAEELIFGRDHITTGASSDLHSATELAHYMVSNCGMSDAIGPVHIKD-------------RPSSEMQSRIDAEVVKLLR 552 (613)
Q Consensus 486 raAE~~~~g~~~~~~ga~~Dl~~at~~a~~mv~~~Gm~~~~g~~~~~~-------------~~~~~~~~~id~ev~~~l~ 552 (613)
||||+++||.+++||||+|||++||+||+.||++||||+++|++.+.. .+|++++..||.||+++|+
T Consensus 81 RaAEelifG~g~vttGA~~Dl~~AT~iAr~MV~~~GMs~~lG~v~~~~~~~~flg~~~~~~~~Se~ta~~iD~Ev~~il~ 160 (238)
T 2di4_A 81 RAAEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKVGPIAIRRVANPFLGGMTTAVDTSPDLLREIDEEVKRIIT 160 (238)
T ss_dssp HHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTSCCCTTTCSCCCCC----------CCCSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccChHhHHHHHHHHHHHHHHHhCCCCCCCceeecCCccccccccccccccCHHHHHHHHHHHHHHHH
Confidence 999999997657999999999999999999999999999999998752 3588899999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcccCHHHHHHhhccC
Q 007190 553 EAYDRVKALLKKHEKQLHALANALLEYETLSAEEIKRILLPY 594 (613)
Q Consensus 553 ~~~~~a~~iL~~~r~~l~~la~~Lle~etL~~~ei~~i~~~~ 594 (613)
+||++|++||++||+.|++||++|+++|||+++||++|+.++
T Consensus 161 ~ay~~a~~iL~~nr~~L~~lA~~Lle~EtL~~~ei~~il~~~ 202 (238)
T 2di4_A 161 EQYEKAKAIVEEYKEPLKAVVKKLLEKETITCEEFVEVFKLY 202 (238)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHHccC
Confidence 999999999999999999999999999999999999999764
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.1e-45 Score=424.30 Aligned_cols=229 Identities=41% Similarity=0.723 Sum_probs=188.2
Q ss_pred cCCCCCCCCcccCCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchh
Q 007190 160 MPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 238 (613)
Q Consensus 160 ~~~~~~~~f~dV~G~~e~k~~L~eiv~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~ 238 (613)
..+.+.++|+||.|++++|++|++.+.+ +++|+.|.++|.++|+|+|||||||||||++|+++|++++.||+.++++++
T Consensus 468 ~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l 547 (806)
T 3cf2_A 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 547 (806)
T ss_dssp CCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHH
T ss_pred cccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchh
Confidence 3456678999999999999999999988 899999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccC----CcccHHHHHHHHHHhhccccCCceEEEeecCCCC
Q 007190 239 EEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD 314 (613)
Q Consensus 239 ~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~----~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~ 314 (613)
.++|+|++++.++.+|..|+..+||||||||||+++++|+.. .+...+++++||.+|||+..+.+|+||+|||+|+
T Consensus 548 ~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~ 627 (806)
T 3cf2_A 548 LTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD 627 (806)
T ss_dssp HTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSS
T ss_pred hccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCch
Confidence 999999999999999999999999999999999999888532 2345789999999999999999999999999999
Q ss_pred CCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 007190 315 ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVD 388 (613)
Q Consensus 315 ~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~ 388 (613)
.||+|++||||||++|+||+||.++|.+||+.|+++.++..++|+..||+.|+||||+||.++|++|++.|.++
T Consensus 628 ~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~ 701 (806)
T 3cf2_A 628 IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRE 701 (806)
T ss_dssp SSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHH
T ss_pred hCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876
No 11
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=4.6e-43 Score=404.87 Aligned_cols=247 Identities=41% Similarity=0.648 Sum_probs=230.3
Q ss_pred CCCCCCcccCCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhh
Q 007190 163 KNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM 241 (613)
Q Consensus 163 ~~~~~f~dV~G~~e~k~~L~eiv~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~ 241 (613)
.+.++|+||.|++++|++|++++.+ +++|+.|..+|.++|+|||||||||||||++||++|++++.+|+.++++++.++
T Consensus 198 ~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk 277 (806)
T 3cf2_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSS
T ss_pred CCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcc
Confidence 4568999999999999999999998 999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCC-cccHHHHHHHHHHhhccccCCceEEEeecCCCCCCChhh
Q 007190 242 FVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE-GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPAL 320 (613)
Q Consensus 242 ~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~-~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aL 320 (613)
|.|.+++.++.+|..|+..+||||||||||+++++|+... ....+++++|+.+|+++..+.+|+||+|||+|+.||+++
T Consensus 278 ~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~AL 357 (806)
T 3cf2_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPAL 357 (806)
T ss_dssp CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTT
T ss_pred cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHH
Confidence 9999999999999999999999999999999999886544 345788999999999999999999999999999999999
Q ss_pred cCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC----------
Q 007190 321 TRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGG---------- 390 (613)
Q Consensus 321 lRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~---------- 390 (613)
+||||||+.|++++||.++|.+||+.|+++..+..++|+..+|..|+||+|+||.++|++|++.|.++..
T Consensus 358 rR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~ 437 (806)
T 3cf2_A 358 RRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETI 437 (806)
T ss_dssp TSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCC
T ss_pred hCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 9999999999999999999999999999999888999999999999999999999999999999877631
Q ss_pred -------CccCHHHHHHHHHHHhcCC
Q 007190 391 -------EKLTATELEFAKDRILMGT 409 (613)
Q Consensus 391 -------~~It~~dl~~A~~~v~~g~ 409 (613)
..|+.+||..|+..+.+..
T Consensus 438 ~~e~~~~~~v~~~Df~~Al~~~~ps~ 463 (806)
T 3cf2_A 438 DAEVMNSLAVTMDDFRWALSQSNPSA 463 (806)
T ss_dssp SHHHHHHCEECTTHHHHHHSSSSCCC
T ss_pred chhhhccceeeHHHHHHHHHhCCCcc
Confidence 2478899999988775543
No 12
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=1.9e-39 Score=328.79 Aligned_cols=249 Identities=63% Similarity=1.020 Sum_probs=225.8
Q ss_pred CCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhh
Q 007190 161 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 240 (613)
Q Consensus 161 ~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~ 240 (613)
+..+..+|+||+|++++|+++.+++.++.++..|..+|.+.|+++||+||||||||++|+++|++++.|++.++++++.+
T Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 4 EDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83 (257)
T ss_dssp ECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred ccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH
Confidence 34566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccC----CcccHHHHHHHHHHhhccccCCceEEEeecCCCCCC
Q 007190 241 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 316 (613)
Q Consensus 241 ~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~----~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~L 316 (613)
.+.+.+.+.++.+|..+....|+++||||+|.++..+... .......+++++..++++..+.+++||++||.++.+
T Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l 163 (257)
T 1lv7_A 84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVL 163 (257)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTS
T ss_pred HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhC
Confidence 8889889999999999999999999999999998766432 122347889999999998888899999999999999
Q ss_pred ChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Q 007190 317 DPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTAT 396 (613)
Q Consensus 317 d~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~ 396 (613)
|++++|||||++.+.+++|+.++|.+|++.+++..++.++.++..++..++||+++||.++|++|+..|.+++...|+.+
T Consensus 164 ~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~ 243 (257)
T 1lv7_A 164 DPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMV 243 (257)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHH
T ss_pred CHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHH
Confidence 99999999999999999999999999999999988888888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC
Q 007190 397 ELEFAKDRILMGT 409 (613)
Q Consensus 397 dl~~A~~~v~~g~ 409 (613)
|++.|++++..|.
T Consensus 244 ~~~~a~~~~~~~~ 256 (257)
T 1lv7_A 244 EFEKAKDKIMMGL 256 (257)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHhcCC
Confidence 9999999998775
No 13
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=9.7e-39 Score=332.34 Aligned_cols=246 Identities=39% Similarity=0.671 Sum_probs=222.7
Q ss_pred cCCCCCCCCcccCCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchh
Q 007190 160 MPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 238 (613)
Q Consensus 160 ~~~~~~~~f~dV~G~~e~k~~L~eiv~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~ 238 (613)
..+.+.++|+||+|++++|+.|++.+.+ +++|+.|..+|..+|+++||+||||||||++|+++|++++.+|+.++++++
T Consensus 6 ~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l 85 (301)
T 3cf0_A 6 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 85 (301)
T ss_dssp CEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHH
T ss_pred cccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHH
Confidence 3456678999999999999999999887 899999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccC----CcccHHHHHHHHHHhhccccCCceEEEeecCCCC
Q 007190 239 EEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD 314 (613)
Q Consensus 239 ~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~----~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~ 314 (613)
...+.|...+.++.+|..++...||||||||+|.+...++.. .+...+.+++|+..|+++....+++||+|||+++
T Consensus 86 ~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~ 165 (301)
T 3cf0_A 86 LTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD 165 (301)
T ss_dssp HHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGG
T ss_pred HhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCcc
Confidence 999999999999999999999999999999999997655321 2344678899999999988888999999999999
Q ss_pred CCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC-----
Q 007190 315 ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDG----- 389 (613)
Q Consensus 315 ~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~----- 389 (613)
.||++++|||||++.+++++|+.++|.+|++.++++.++..++++..++..+.||+|+||.++|++|+..|.++.
T Consensus 166 ~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~ 245 (301)
T 3cf0_A 166 IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEI 245 (301)
T ss_dssp GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999998887788999999999999999999999999998886542
Q ss_pred --------------------CCccCHHHHHHHHHHH
Q 007190 390 --------------------GEKLTATELEFAKDRI 405 (613)
Q Consensus 390 --------------------~~~It~~dl~~A~~~v 405 (613)
...|+.+||..|+.++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~ 281 (301)
T 3cf0_A 246 RRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFA 281 (301)
T ss_dssp --------------------CCCBCHHHHHHHHTTC
T ss_pred hhhhhcccccccccccccccCCccCHHHHHHHHHHc
Confidence 1358889999888764
No 14
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=9.2e-39 Score=328.75 Aligned_cols=246 Identities=41% Similarity=0.657 Sum_probs=209.0
Q ss_pred CCCCCCcccCCCHHHHHHHHHHH-HHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhh
Q 007190 163 KNVKTFKDVKGCDDAKQELVEVV-EYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM 241 (613)
Q Consensus 163 ~~~~~f~dV~G~~e~k~~L~eiv-~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~ 241 (613)
.+.++|+||+|++++|++|++.+ ..+.+++.|..++..+|+|++|+||||||||+|++++|++++.+++.+++.++...
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM 83 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh
Confidence 35689999999999999999855 45899999999999999999999999999999999999999999999999999888
Q ss_pred hhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccC-CcccHHHHHHHHHHhhccccCCceEEEeecCCCCCCChhh
Q 007190 242 FVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW-EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPAL 320 (613)
Q Consensus 242 ~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~-~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aL 320 (613)
+.+...+.++.+|..++...||++|+||+|.++..++.. .....+.+++++.+|++...+..++++++||+|+.||+++
T Consensus 84 ~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al 163 (274)
T 2x8a_A 84 YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAI 163 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHH
T ss_pred hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhh
Confidence 889989999999999988999999999999987655322 1223467899999999998888999999999999999999
Q ss_pred cCCCccceEEEccCCCHhhHHHHHHHHhcc---CCCCChhcHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHhC------
Q 007190 321 TRPGRFDRHIVVPNPDVRGRQEILELYLQD---KPLADDVDVKAIARGTP--GFNGADLANLVNIAAIKAAVDG------ 389 (613)
Q Consensus 321 lRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~---~~l~~d~dl~~la~~t~--G~sgadL~~lv~~Aa~~A~~~~------ 389 (613)
+||||||+.|++++|+.++|.+||+.++++ .++..++++..+|..+. ||||+||.++|++|++.|.++.
T Consensus 164 ~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~~ 243 (274)
T 2x8a_A 164 LRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKS 243 (274)
T ss_dssp HSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-----
T ss_pred cCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999854 34557889999999754 9999999999999999988752
Q ss_pred -----CCccCHHHHHHHHHHHhcC
Q 007190 390 -----GEKLTATELEFAKDRILMG 408 (613)
Q Consensus 390 -----~~~It~~dl~~A~~~v~~g 408 (613)
...|+.+||+.|+.++.+.
T Consensus 244 ~~~~~~~~i~~~df~~al~~~~ps 267 (274)
T 2x8a_A 244 GNEKGELKVSHKHFEEAFKKVRSS 267 (274)
T ss_dssp ------CCBCHHHHHHHHTTCCCC
T ss_pred cccccCCeecHHHHHHHHHHhcCC
Confidence 3369999999999876543
No 15
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=7.7e-39 Score=323.46 Aligned_cols=253 Identities=50% Similarity=0.809 Sum_probs=205.8
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhhhhh
Q 007190 165 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVG 244 (613)
Q Consensus 165 ~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~~~g 244 (613)
.++|+||+|++++|+.+++++.++.+++.|..+|...|+++||+||||||||++|+++|++++.|++.++++++.+.+.+
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 81 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGG 81 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTT
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred hhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccC-----CcccHHHHHHHHHHhhccccCCceEEEeecCCCCCCChh
Q 007190 245 VGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW-----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPA 319 (613)
Q Consensus 245 ~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~-----~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~a 319 (613)
.+...++.+|..+....|+||||||+|.+..++... .......++.++..+++.....++++|++||.++.+|++
T Consensus 82 ~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~ 161 (262)
T 2qz4_A 82 LGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGA 161 (262)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSG
T ss_pred hhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHH
Confidence 888999999999999999999999999997765432 223457889999999988778899999999999999999
Q ss_pred hcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhc--HHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHH
Q 007190 320 LTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVD--VKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATE 397 (613)
Q Consensus 320 LlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~d--l~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~d 397 (613)
++|+|||++.+++++|+.++|.+|++.+++...+..+.+ +..++..+.|++++||.++|++|+..|.+++...|+.+|
T Consensus 162 l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d 241 (262)
T 2qz4_A 162 LMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLN 241 (262)
T ss_dssp GGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCBCC
T ss_pred HhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHH
Confidence 999999999999999999999999999998877665444 478999999999999999999999999998889999999
Q ss_pred HHHHHHHHhcCCccccccch
Q 007190 398 LEFAKDRILMGTERKTMFIS 417 (613)
Q Consensus 398 l~~A~~~v~~g~~~~~~~~~ 417 (613)
+..|+.++..+..++...++
T Consensus 242 ~~~a~~~~~~~~~~~~~~~~ 261 (262)
T 2qz4_A 242 FEYAVERVLAGTAKKSKILS 261 (262)
T ss_dssp HHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHhccChhhhhHhhc
Confidence 99999999888766654443
No 16
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2.8e-37 Score=316.76 Aligned_cols=247 Identities=45% Similarity=0.717 Sum_probs=228.3
Q ss_pred CCCCCCCcccCCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhh
Q 007190 162 EKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 240 (613)
Q Consensus 162 ~~~~~~f~dV~G~~e~k~~L~eiv~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~ 240 (613)
..+..+|++|+|++++++.|.+.+.. +..++.|..+|...|+++||+||||||||++|+++|++++.+++.++++++..
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK 89 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH
Confidence 45567899999999999999998877 88999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccC----CcccHHHHHHHHHHhhccccCCceEEEeecCCCCCC
Q 007190 241 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 316 (613)
Q Consensus 241 ~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~----~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~L 316 (613)
.+.|.....++.+|..++...|+||||||+|.+..++... .......+..++..++++..+.+++||+|||.++.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l 169 (285)
T 3h4m_A 90 KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDIL 169 (285)
T ss_dssp CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGB
T ss_pred hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhc
Confidence 9999999999999999999999999999999998766532 223467888899999988888899999999999999
Q ss_pred ChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Q 007190 317 DPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTAT 396 (613)
Q Consensus 317 d~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~ 396 (613)
|++++|++||++.+.++.|+.++|.+|++.+++...+..+.++..++..+.|++++||.++|+.|...|..++...|+.+
T Consensus 170 ~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~ 249 (285)
T 3h4m_A 170 DPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMD 249 (285)
T ss_dssp CHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHH
T ss_pred CHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHH
Confidence 99999999999999999999999999999999988888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC
Q 007190 397 ELEFAKDRILMG 408 (613)
Q Consensus 397 dl~~A~~~v~~g 408 (613)
|+..|+.++...
T Consensus 250 d~~~al~~~~~~ 261 (285)
T 3h4m_A 250 DFRKAVEKIMEK 261 (285)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999988653
No 17
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.9e-37 Score=322.19 Aligned_cols=225 Identities=36% Similarity=0.611 Sum_probs=203.2
Q ss_pred CCCCCCCCcccCCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc-CCCeeEeecchh
Q 007190 161 PEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-GVPFFYRAGSEF 238 (613)
Q Consensus 161 ~~~~~~~f~dV~G~~e~k~~L~eiv~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~-~~pfi~is~s~~ 238 (613)
.+.+.++|+||+|++++|+.|++.+.+ +++|+.|.. +..+|+++|||||||||||++|+++|+++ +.+|+.++++++
T Consensus 4 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l 82 (322)
T 1xwi_A 4 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL 82 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSS
T ss_pred ecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHH
Confidence 355678999999999999999998877 888888874 35678999999999999999999999999 899999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCC-cccHHHHHHHHHHhhccc-cCCceEEEeecCCCCCC
Q 007190 239 EEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE-GHTKKTLHQLLVEMDGFE-QNEGIILMAATNLPDIL 316 (613)
Q Consensus 239 ~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~-~~~~~~l~~LL~~ldg~~-~~~~ViVIaaTN~p~~L 316 (613)
...|.|...+.++.+|..++..+|+||||||+|.+..++.... ....+.+++|+..|+++. ...+++||+|||+|+.+
T Consensus 83 ~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~l 162 (322)
T 1xwi_A 83 VSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVL 162 (322)
T ss_dssp CCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTS
T ss_pred HhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccC
Confidence 9999999999999999999999999999999999988775432 334678899999999986 46789999999999999
Q ss_pred ChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 007190 317 DPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVD 388 (613)
Q Consensus 317 d~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~ 388 (613)
|++++| ||++.+++++|+.++|.+||+.++++.+.. .+.++..|++.|.||||+||.++|++|++.|.++
T Consensus 163 d~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~ 233 (322)
T 1xwi_A 163 DSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRK 233 (322)
T ss_dssp CHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHH
T ss_pred CHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999 999999999999999999999999877654 6788999999999999999999999999988775
No 18
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=8.3e-37 Score=320.57 Aligned_cols=227 Identities=36% Similarity=0.616 Sum_probs=203.0
Q ss_pred ccCCCCCCCCcccCCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecch
Q 007190 159 VMPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE 237 (613)
Q Consensus 159 ~~~~~~~~~f~dV~G~~e~k~~L~eiv~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~ 237 (613)
+..+.+.++|+||+|++++|+.|++.+.+ ++.|+.|.. +..+|+++|||||||||||++|+++|++++.+|+.+++++
T Consensus 8 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~ 86 (322)
T 3eie_A 8 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 86 (322)
T ss_dssp SEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHH
T ss_pred eeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHH
Confidence 44567788999999999999999998876 777877766 5678899999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccC-CcccHHHHHHHHHHhhccc-cCCceEEEeecCCCCC
Q 007190 238 FEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW-EGHTKKTLHQLLVEMDGFE-QNEGIILMAATNLPDI 315 (613)
Q Consensus 238 ~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~-~~~~~~~l~~LL~~ldg~~-~~~~ViVIaaTN~p~~ 315 (613)
+...|.|...+.++.+|..++...|+||||||+|.+..+++.. ........++++..|+++. ...+++||+|||.|+.
T Consensus 87 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ 166 (322)
T 3eie_A 87 LVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQ 166 (322)
T ss_dssp HHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGG
T ss_pred HhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhh
Confidence 9999999999999999999999999999999999998876433 3345778899999999884 5678999999999999
Q ss_pred CChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 007190 316 LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVD 388 (613)
Q Consensus 316 Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~ 388 (613)
||++++| ||+..+++++|+.++|.+||+.++++.+.. .+.++..+++.+.||+|+||.++|++|+..|.++
T Consensus 167 ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~ 238 (322)
T 3eie_A 167 LDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 238 (322)
T ss_dssp SCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHH
T ss_pred CCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999 999999999999999999999999887654 6788999999999999999999999999888775
No 19
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=100.00 E-value=3e-36 Score=304.79 Aligned_cols=243 Identities=59% Similarity=0.971 Sum_probs=219.3
Q ss_pred cCCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhh
Q 007190 160 MPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 239 (613)
Q Consensus 160 ~~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~ 239 (613)
.++.+..+|+|++|.++++.++++++..+.++..+...+...|+|++|+||||||||++++++++..+.+++.+++.++.
T Consensus 7 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~ 86 (254)
T 1ixz_A 7 LTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 86 (254)
T ss_dssp -CCCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred ccCCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHH
Confidence 45667789999999999999999999999888899999999999999999999999999999999999999999999988
Q ss_pred hhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccC----CcccHHHHHHHHHHhhccccCCceEEEeecCCCCC
Q 007190 240 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 315 (613)
Q Consensus 240 ~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~----~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~ 315 (613)
..+.+...+.++.+|..+....|+++||||+|.++..+... .....+.+++++.+|++...+..++++++||.|+.
T Consensus 87 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 87 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI 166 (254)
T ss_dssp HSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGG
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchh
Confidence 88888888889999999988889999999999997665421 22345778999999999888888999999999999
Q ss_pred CChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Q 007190 316 LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTA 395 (613)
Q Consensus 316 Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~ 395 (613)
||++++|++||++.+.++.|+.++|.+||+.+++...+..++++..++..++|++|+||.++|++|+..|.+++...||.
T Consensus 167 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~ 246 (254)
T 1ixz_A 167 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITM 246 (254)
T ss_dssp SCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCH
T ss_pred CCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCH
Confidence 99999999999999999999999999999999988888888899999999999999999999999999999988889999
Q ss_pred HHHHHHH
Q 007190 396 TELEFAK 402 (613)
Q Consensus 396 ~dl~~A~ 402 (613)
+|+++|+
T Consensus 247 ~dl~~a~ 253 (254)
T 1ixz_A 247 KDLEEAA 253 (254)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9998874
No 20
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=7.3e-36 Score=317.97 Aligned_cols=228 Identities=36% Similarity=0.618 Sum_probs=194.1
Q ss_pred cccCCCCCCCCcccCCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecc
Q 007190 158 EVMPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGS 236 (613)
Q Consensus 158 ~~~~~~~~~~f~dV~G~~e~k~~L~eiv~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s 236 (613)
.+....+.++|+||+|++++|+.|++.+.+ ++.|+.|.. +..+++++|||||||||||++|+++|++++.+|+.++++
T Consensus 40 ~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~ 118 (355)
T 2qp9_X 40 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS 118 (355)
T ss_dssp -------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHH
T ss_pred hhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHH
Confidence 344566778999999999999999998876 788888876 667889999999999999999999999999999999999
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCC-cccHHHHHHHHHHhhcccc-CCceEEEeecCCCC
Q 007190 237 EFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE-GHTKKTLHQLLVEMDGFEQ-NEGIILMAATNLPD 314 (613)
Q Consensus 237 ~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~-~~~~~~l~~LL~~ldg~~~-~~~ViVIaaTN~p~ 314 (613)
++...|.|...+.++.+|..++...|+||||||+|.+...+.... .......++|+..|+++.. ..+++||++||+|+
T Consensus 119 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~ 198 (355)
T 2qp9_X 119 DLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPW 198 (355)
T ss_dssp HHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGG
T ss_pred HHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcc
Confidence 999999999999999999999999999999999999987764432 2346778999999998754 57899999999999
Q ss_pred CCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 007190 315 ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVD 388 (613)
Q Consensus 315 ~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~ 388 (613)
.||++++| ||++.+++++|+.++|.+||+.+++..+.. .+.++..|++.+.||+|+||.++|++|++.|.++
T Consensus 199 ~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~ 271 (355)
T 2qp9_X 199 QLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 271 (355)
T ss_dssp GSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999999999877643 6788999999999999999999999999998875
No 21
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=100.00 E-value=4.7e-38 Score=320.00 Aligned_cols=250 Identities=54% Similarity=0.875 Sum_probs=220.7
Q ss_pred CCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhh
Q 007190 161 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 240 (613)
Q Consensus 161 ~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~ 240 (613)
++.+..+|+||+|++++++.+.+++.++..|+.|..++.+.|+++||+||||||||++|+++|++++.||+.++++++..
T Consensus 3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 82 (268)
T 2r62_A 3 AEKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIE 82 (268)
T ss_dssp CCCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTT
T ss_pred ccCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHH
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccC-----CcccHHHHHHHHHHhhcccc-CCceEEEeecCCCC
Q 007190 241 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW-----EGHTKKTLHQLLVEMDGFEQ-NEGIILMAATNLPD 314 (613)
Q Consensus 241 ~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~-----~~~~~~~l~~LL~~ldg~~~-~~~ViVIaaTN~p~ 314 (613)
.+.|.+...++.+|..+....|+||||||+|.+...+... .....+.+++|+..++++.. ..+++||+|||.++
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~ 162 (268)
T 2r62_A 83 MFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPE 162 (268)
T ss_dssp SCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCT
T ss_pred hhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCch
Confidence 8888888888899999999899999999999997765321 12234567788888887654 34599999999999
Q ss_pred CCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccC
Q 007190 315 ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLT 394 (613)
Q Consensus 315 ~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It 394 (613)
.+|++++|+|||+..+.+++|+.++|.+||+.+++...+..+.++..+++.+.|++|+||.++|++|+..|..++...|+
T Consensus 163 ~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~~~i~ 242 (268)
T 2r62_A 163 ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVR 242 (268)
T ss_dssp TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCCCSCC
T ss_pred hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcC
Confidence 99999999999999999999999999999999999888778888999999999999999999999999998888888999
Q ss_pred HHHHHHHHHHHhcCCc
Q 007190 395 ATELEFAKDRILMGTE 410 (613)
Q Consensus 395 ~~dl~~A~~~v~~g~~ 410 (613)
.+|+..|+.++.+...
T Consensus 243 ~~~~~~a~~~~~~~~~ 258 (268)
T 2r62_A 243 QQHLKEAVERGIAGLE 258 (268)
T ss_dssp HHHHHTSCTTCCCCCC
T ss_pred HHHHHHHHHHHhhcch
Confidence 9999998877655443
No 22
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=100.00 E-value=4.1e-35 Score=301.02 Aligned_cols=243 Identities=59% Similarity=0.971 Sum_probs=219.6
Q ss_pred cCCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhh
Q 007190 160 MPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 239 (613)
Q Consensus 160 ~~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~ 239 (613)
....+..+|+||+|.+++++++++++..+.++..+...+...|+|++|+||||||||++++++++..+.+++.+++.++.
T Consensus 31 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~ 110 (278)
T 1iy2_A 31 LTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 110 (278)
T ss_dssp BCCCCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred ccCCCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHH
Confidence 44557789999999999999999999999999899999999999999999999999999999999999999999999998
Q ss_pred hhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccC----CcccHHHHHHHHHHhhccccCCceEEEeecCCCCC
Q 007190 240 EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW----EGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 315 (613)
Q Consensus 240 ~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~----~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~ 315 (613)
..+.+...+.+..+|..+....|+++||||+|.++..+... .....+.+++++.++++...+..++++++||.|+.
T Consensus 111 ~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 111 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp HSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTS
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchh
Confidence 88888888889999999988889999999999987655321 12346778899999999887778999999999999
Q ss_pred CChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCH
Q 007190 316 LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTA 395 (613)
Q Consensus 316 Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~ 395 (613)
||++++|++||++.+.+++|+.++|.+||+.+++...+..++++..++..++|++++||.++|++|+..|.+++...|+.
T Consensus 191 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~ 270 (278)
T 1iy2_A 191 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITM 270 (278)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCH
T ss_pred CCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCH
Confidence 99999999999999999999999999999999988888888899999999999999999999999999999988889999
Q ss_pred HHHHHHH
Q 007190 396 TELEFAK 402 (613)
Q Consensus 396 ~dl~~A~ 402 (613)
+|+++|+
T Consensus 271 ~dl~~a~ 277 (278)
T 1iy2_A 271 KDLEEAA 277 (278)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9998874
No 23
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=1.9e-35 Score=327.07 Aligned_cols=243 Identities=42% Similarity=0.681 Sum_probs=223.2
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhhh
Q 007190 164 NVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMF 242 (613)
Q Consensus 164 ~~~~f~dV~G~~e~k~~L~eiv~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~~ 242 (613)
+..+|++|+|.+++++.|++.+.. +++|+.|..+|..+|+++||+||||||||++|+++|++++.||++++|+++.+.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 356899999999999999999887 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCc-ccHHHHHHHHHHhhccccCCceEEEeecCCCCCCChhhc
Q 007190 243 VGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG-HTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALT 321 (613)
Q Consensus 243 ~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~-~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLl 321 (613)
.|.....++.+|..|....|++|||||||.+..+++...+ .....+++|+..|++...+.+++||+|||+++.||++++
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~ 358 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALR 358 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHh
Confidence 9999999999999999999999999999999887754332 346788999999999888889999999999999999999
Q ss_pred CCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCC----------
Q 007190 322 RPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGE---------- 391 (613)
Q Consensus 322 RpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~---------- 391 (613)
|+|||++.+++++|+.++|.+||+.+++...+..+.++..++..+.||+++||.++|++|+..|.++...
T Consensus 359 r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~ 438 (489)
T 3hu3_A 359 RFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETID 438 (489)
T ss_dssp STTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCC
T ss_pred CCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 9999999999999999999999999999988888889999999999999999999999999999887643
Q ss_pred -------ccCHHHHHHHHHHHh
Q 007190 392 -------KLTATELEFAKDRIL 406 (613)
Q Consensus 392 -------~It~~dl~~A~~~v~ 406 (613)
.|+.+||+.|+.++.
T Consensus 439 ~~~~~~~~vt~edf~~Al~~~~ 460 (489)
T 3hu3_A 439 AEVMNSLAVTMDDFRWALSQSN 460 (489)
T ss_dssp HHHHHHCCBCHHHHHHHHTSHH
T ss_pred hhhcccCcCCHHHHHHHHHhCC
Confidence 377888888876553
No 24
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=1.4e-34 Score=316.95 Aligned_cols=229 Identities=36% Similarity=0.606 Sum_probs=194.7
Q ss_pred ccccCCCCCCCCcccCCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc-CCCeeEee
Q 007190 157 KEVMPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-GVPFFYRA 234 (613)
Q Consensus 157 ~~~~~~~~~~~f~dV~G~~e~k~~L~eiv~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~-~~pfi~is 234 (613)
..+..+.+.++|+||+|++++|+.|.+.+.+ ++.|+.|.. +..+|+++||+||||||||++|+++|+++ +.+|+.++
T Consensus 122 ~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~ 200 (444)
T 2zan_A 122 GAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSIS 200 (444)
T ss_dssp --CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEEC
T ss_pred cceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEe
Confidence 3445567788999999999999999998765 788887764 35678999999999999999999999999 89999999
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCC-cccHHHHHHHHHHhhccc-cCCceEEEeecCC
Q 007190 235 GSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE-GHTKKTLHQLLVEMDGFE-QNEGIILMAATNL 312 (613)
Q Consensus 235 ~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~-~~~~~~l~~LL~~ldg~~-~~~~ViVIaaTN~ 312 (613)
++++...|.|.....++.+|..++...|+||||||||.+...+.... ....+.+++|+..|+++. ...+++||+|||+
T Consensus 201 ~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~ 280 (444)
T 2zan_A 201 SSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI 280 (444)
T ss_dssp CC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESC
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCC
Confidence 99999999999999999999999999999999999999987765432 345778899999999875 3678999999999
Q ss_pred CCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 007190 313 PDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVD 388 (613)
Q Consensus 313 p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~ 388 (613)
|+.||++++| ||++.+.+++|+.++|..||+.++...+.. .+.++..|++.+.||||+||.++|++|++.|.++
T Consensus 281 ~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~ 355 (444)
T 2zan_A 281 PWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355 (444)
T ss_dssp GGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHH
T ss_pred ccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999999999876653 6788999999999999999999999999988775
No 25
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=6e-33 Score=286.46 Aligned_cols=244 Identities=36% Similarity=0.544 Sum_probs=209.3
Q ss_pred ccCCCCCCCCcccCCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecch
Q 007190 159 VMPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE 237 (613)
Q Consensus 159 ~~~~~~~~~f~dV~G~~e~k~~L~eiv~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~ 237 (613)
+.++.+.++|+||+|++++++.|.+.+.. +.+|+.|..++ .+++++||+||||||||++|+++|++++.+|+.+++++
T Consensus 11 ~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~ 89 (297)
T 3b9p_A 11 IVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAAS 89 (297)
T ss_dssp TBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTT
T ss_pred hccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHH
Confidence 44456678999999999999999998866 67787777654 56789999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCC-cccHHHHHHHHHHhhccccC---CceEEEeecCCC
Q 007190 238 FEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE-GHTKKTLHQLLVEMDGFEQN---EGIILMAATNLP 313 (613)
Q Consensus 238 ~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~-~~~~~~l~~LL~~ldg~~~~---~~ViVIaaTN~p 313 (613)
+...+.|.+...++.+|..+....|+||||||+|.+...+.... .......+.|+..++++... .+++||++||.|
T Consensus 90 l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~ 169 (297)
T 3b9p_A 90 LTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRP 169 (297)
T ss_dssp TSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCG
T ss_pred HhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCCh
Confidence 99888898899999999999999999999999999987765332 23467778899999987543 579999999999
Q ss_pred CCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC---
Q 007190 314 DILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDG--- 389 (613)
Q Consensus 314 ~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~--- 389 (613)
+.+|++++| ||+..+.+++|+.++|..|++.+++..... ++.++..+++.+.|++++||.++|+.|+..+.++.
T Consensus 170 ~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~ 247 (297)
T 3b9p_A 170 QELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVE 247 (297)
T ss_dssp GGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--
T ss_pred hhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999 999999999999999999999999875542 56678999999999999999999999999988864
Q ss_pred ---------CCccCHHHHHHHHHHH
Q 007190 390 ---------GEKLTATELEFAKDRI 405 (613)
Q Consensus 390 ---------~~~It~~dl~~A~~~v 405 (613)
...|+.+||..|+.++
T Consensus 248 ~~~~~~~~~~~~i~~~d~~~a~~~~ 272 (297)
T 3b9p_A 248 QVKCLDISAMRAITEQDFHSSLKRI 272 (297)
T ss_dssp ------CCCCCCCCHHHHHHHTTSC
T ss_pred hcccccccccCCcCHHHHHHHHHHc
Confidence 2579999999988754
No 26
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-32 Score=292.34 Aligned_cols=247 Identities=31% Similarity=0.527 Sum_probs=212.6
Q ss_pred ccCCCCCCCCcccCCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecch
Q 007190 159 VMPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE 237 (613)
Q Consensus 159 ~~~~~~~~~f~dV~G~~e~k~~L~eiv~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~ 237 (613)
+....+..+|+||+|++++++.|.+.+.+ +..++.|...+ ..|+++||+||||||||++|+++|++++.+|+.+++++
T Consensus 74 i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~ 152 (357)
T 3d8b_A 74 IMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASS 152 (357)
T ss_dssp TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGG
T ss_pred cccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHH
Confidence 34455678999999999999999998876 77888777654 67889999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccC-CcccHHHHHHHHHHhhccc--cCCceEEEeecCCCC
Q 007190 238 FEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW-EGHTKKTLHQLLVEMDGFE--QNEGIILMAATNLPD 314 (613)
Q Consensus 238 ~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~-~~~~~~~l~~LL~~ldg~~--~~~~ViVIaaTN~p~ 314 (613)
+...+.|.....++.+|..++...|+||||||+|.+...+... .....+.+++++..+++.. ...+++||++||.++
T Consensus 153 l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~ 232 (357)
T 3d8b_A 153 LTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQ 232 (357)
T ss_dssp GCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGG
T ss_pred hhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChh
Confidence 9999999999999999999999999999999999998766432 2234677889999999865 346799999999999
Q ss_pred CCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC----
Q 007190 315 ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDG---- 389 (613)
Q Consensus 315 ~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~---- 389 (613)
.||++++| ||+..+.+++|+.++|.+|++.+++..... .+.++..+++.+.||+++||.++|+.|+..+.++-
T Consensus 233 ~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~ 310 (357)
T 3d8b_A 233 EIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTAD 310 (357)
T ss_dssp GBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC--
T ss_pred hCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999 999999999999999999999999765433 56678999999999999999999999998888743
Q ss_pred --------CCccCHHHHHHHHHHHhcC
Q 007190 390 --------GEKLTATELEFAKDRILMG 408 (613)
Q Consensus 390 --------~~~It~~dl~~A~~~v~~g 408 (613)
...|+.+||..|+.++.+.
T Consensus 311 ~~~~~~~~~~~i~~~d~~~al~~~~ps 337 (357)
T 3d8b_A 311 IATITPDQVRPIAYIDFENAFRTVRPS 337 (357)
T ss_dssp --------CCCBCHHHHHHHHHHHGGG
T ss_pred hccccccccCCcCHHHHHHHHHhcCCC
Confidence 3579999999999987653
No 27
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=100.00 E-value=7.6e-32 Score=289.99 Aligned_cols=246 Identities=32% Similarity=0.532 Sum_probs=203.1
Q ss_pred cccCCCCCCCCcccCCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecc
Q 007190 158 EVMPEKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGS 236 (613)
Q Consensus 158 ~~~~~~~~~~f~dV~G~~e~k~~L~eiv~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s 236 (613)
.+....+.++|+||+|++++++.|.+.+.. +..++.|...+ .+++++||+||||||||++|+++|.+++.+|+.++++
T Consensus 104 ~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~ 182 (389)
T 3vfd_A 104 EIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAA 182 (389)
T ss_dssp TTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSC
T ss_pred hhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHH
Confidence 455566778999999999999999998766 56777777665 4578999999999999999999999999999999999
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccC-CcccHHHHHHHHHHhhcccc--CCceEEEeecCCC
Q 007190 237 EFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQW-EGHTKKTLHQLLVEMDGFEQ--NEGIILMAATNLP 313 (613)
Q Consensus 237 ~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~-~~~~~~~l~~LL~~ldg~~~--~~~ViVIaaTN~p 313 (613)
++...|.|.....++.+|..++...|+||||||||.+...+... .......++.|+..++++.. ..+++||++||.+
T Consensus 183 ~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~ 262 (389)
T 3vfd_A 183 SLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRP 262 (389)
T ss_dssp CC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCG
T ss_pred HhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCc
Confidence 99999999999999999999999999999999999997765433 23356788899999998764 4679999999999
Q ss_pred CCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh----
Q 007190 314 DILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVD---- 388 (613)
Q Consensus 314 ~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~---- 388 (613)
+.||++++| ||+..+.++.|+.++|.+||+.++...... .+.++..++..+.|+++++|..+|+.|+..+.++
T Consensus 263 ~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~ 340 (389)
T 3vfd_A 263 QELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPE 340 (389)
T ss_dssp GGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC
T ss_pred hhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999 999999999999999999999999775443 4567899999999999999999999999998887
Q ss_pred --------CCCccCHHHHHHHHHHHh
Q 007190 389 --------GGEKLTATELEFAKDRIL 406 (613)
Q Consensus 389 --------~~~~It~~dl~~A~~~v~ 406 (613)
....|+.+||..++.++.
T Consensus 341 ~~~~~~~~~~~~i~~~d~~~al~~~~ 366 (389)
T 3vfd_A 341 QVKNMSASEMRNIRLSDFTESLKKIK 366 (389)
T ss_dssp ---CCSSSCCCCCCHHHHHHHHHHCC
T ss_pred hhhccchhhcCCcCHHHHHHHHHHcC
Confidence 345799999999988753
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.98 E-value=6.8e-35 Score=340.58 Aligned_cols=228 Identities=41% Similarity=0.724 Sum_probs=203.0
Q ss_pred CCCCCCCcccCCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhh
Q 007190 162 EKNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 240 (613)
Q Consensus 162 ~~~~~~f~dV~G~~e~k~~L~eiv~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~ 240 (613)
+.+.++|+|+.|++++|+.|.+.+.+ ++.+..|..++..+++++||+||||||||++|+++|++++.+|+.++++++..
T Consensus 470 ~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~ 549 (806)
T 1ypw_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp CCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTT
T ss_pred cCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhh
Confidence 45667999999999999999998877 77888888899999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCC----cccHHHHHHHHHHhhccccCCceEEEeecCCCCCC
Q 007190 241 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 316 (613)
Q Consensus 241 ~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~----~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~L 316 (613)
.|+|...+.++.+|..++...||||||||||.++..++... ....+++++||..|+++....+++||+|||+|+.|
T Consensus 550 ~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~l 629 (806)
T 1ypw_A 550 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 629 (806)
T ss_dssp CCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGG
T ss_pred hhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccC
Confidence 99999999999999999999999999999999988775432 23467889999999999888899999999999999
Q ss_pred ChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC
Q 007190 317 DPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDG 389 (613)
Q Consensus 317 d~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~ 389 (613)
|++++|||||++.|++++|+.++|.+||+.++++.++..++++..+++.+.|||++||.++|++|+..|.++.
T Consensus 630 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~ 702 (806)
T 1ypw_A 630 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp SCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC
T ss_pred CHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888888999999999999999999999999999998765
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.97 E-value=3.3e-32 Score=282.27 Aligned_cols=226 Identities=17% Similarity=0.228 Sum_probs=162.5
Q ss_pred cCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhhhhhhhHHHHHHHHHHH----HcCCCeEEEEcCCCc
Q 007190 197 LGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAA----KKKAPCIIFIDEIDA 272 (613)
Q Consensus 197 lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~~~g~~~~~vr~lf~~A----~~~~P~ILfIDEiD~ 272 (613)
.+.+.|+++|||||||||||++|+++|++++.+|+.++++++...|.|.....++.+|..| +...||||||||||.
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~ 110 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDA 110 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC-
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhh
Confidence 3678899999999999999999999999999999999999999999999999999999998 577899999999999
Q ss_pred cccCCccCC---cccHHHHHHHHHHhhcc-----------ccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHh
Q 007190 273 VGSTRKQWE---GHTKKTLHQLLVEMDGF-----------EQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVR 338 (613)
Q Consensus 273 l~~~r~~~~---~~~~~~l~~LL~~ldg~-----------~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~ 338 (613)
++++++... .......+.|+..||+. ....+++||+|||+++.||++++|||||++.+. .|+.+
T Consensus 111 ~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~ 188 (293)
T 3t15_A 111 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 188 (293)
T ss_dssp -------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHH
T ss_pred hcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHH
Confidence 987554322 13345668888888743 245679999999999999999999999999887 47999
Q ss_pred hHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHH-------HHHHHHHHHhCCCccCHHHHHHHHHHHhcCCcc
Q 007190 339 GRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLV-------NIAAIKAAVDGGEKLTATELEFAKDRILMGTER 411 (613)
Q Consensus 339 ~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv-------~~Aa~~A~~~~~~~It~~dl~~A~~~v~~g~~~ 411 (613)
+|.+|++.++... +++...+++.+.||++++|..+. ..+.....++ +..+.+. .+++.+...
T Consensus 189 ~r~~Il~~~~~~~----~~~~~~l~~~~~~~~~~~l~~~~~l~~~~~~~~i~~~~~~----~g~~~~~---~~~~~~~~~ 257 (293)
T 3t15_A 189 DRIGVCTGIFRTD----NVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSG----TGIEKIG---DKLLNSFDG 257 (293)
T ss_dssp HHHHHHHHHHGGG----CCCHHHHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHH----TCSTTCH---HHHTSCSSC
T ss_pred HHHHHHHHhccCC----CCCHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHH----hCHHHHH---HHHHcCCCC
Confidence 9999999988753 45678888899999998886431 1111111111 1111111 122222222
Q ss_pred ccccchhhhHHHHHHHHhhhHHHHH
Q 007190 412 KTMFISEESKKLTAYHESGHAIVAF 436 (613)
Q Consensus 412 ~~~~~~~~~~~~~A~hEaGhAlva~ 436 (613)
...+++.+....++||+||+++..
T Consensus 258 -~~~~~~~~~~~~~l~~~g~~~~~e 281 (293)
T 3t15_A 258 -PPTFEQPKMTIEKLLEYGNMLVQE 281 (293)
T ss_dssp -SCCCCCCCCCHHHHHHHHHHHHHH
T ss_pred -CCCCCCccccHHHHHHHHHHHHHH
Confidence 234556678889999999999875
No 30
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.96 E-value=1e-28 Score=288.51 Aligned_cols=244 Identities=42% Similarity=0.675 Sum_probs=220.7
Q ss_pred CCCCCCcccCCCHHHHHHHHHHHHH-hcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhh
Q 007190 163 KNVKTFKDVKGCDDAKQELVEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM 241 (613)
Q Consensus 163 ~~~~~f~dV~G~~e~k~~L~eiv~~-l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~ 241 (613)
.+.++|+||+|++++++.|++.+.+ +++|+.|..++..+|+++||+||||||||++|+++|++++.+++.++++++...
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~ 277 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSS
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhh
Confidence 3457999999999999999999987 999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCc-ccHHHHHHHHHHhhccccCCceEEEeecCCCCCCChhh
Q 007190 242 FVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG-HTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPAL 320 (613)
Q Consensus 242 ~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~-~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aL 320 (613)
+.+.....++.+|..+....|+++||||+|.+..+++.... ...+.+++|+..++++..+..+++|++||+++.+|+++
T Consensus 278 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al 357 (806)
T 1ypw_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPAL 357 (806)
T ss_dssp STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTT
T ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHH
Confidence 99999999999999999999999999999999887654332 34677889999999998889999999999999999999
Q ss_pred cCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCC---------
Q 007190 321 TRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGE--------- 391 (613)
Q Consensus 321 lRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~--------- 391 (613)
.+++||++.+.++.|+.++|.+|++.+++...+..+.++..++..+.|++++++..++++|+..+.++...
T Consensus 358 ~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~~~~ 437 (806)
T 1ypw_A 358 RRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETI 437 (806)
T ss_dssp TSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHHHHC
T ss_pred hcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchhhhcc
Confidence 99999999999999999999999999999988888889999999999999999999999999888775432
Q ss_pred --------ccCHHHHHHHHHHHh
Q 007190 392 --------KLTATELEFAKDRIL 406 (613)
Q Consensus 392 --------~It~~dl~~A~~~v~ 406 (613)
.++.+++..++....
T Consensus 438 ~~~~~~~~~v~~~d~~~al~~~~ 460 (806)
T 1ypw_A 438 DAEVMNSLAVTMDDFRWALSQSN 460 (806)
T ss_dssp CHHHHTTCCCCTTHHHHHHHHSC
T ss_pred chhhhhhhhhhhhhhhccccccC
Confidence 356667777766553
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.92 E-value=2.4e-27 Score=260.27 Aligned_cols=199 Identities=25% Similarity=0.301 Sum_probs=146.5
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcC--CCeeEeecchhhhhh
Q 007190 165 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG--VPFFYRAGSEFEEMF 242 (613)
Q Consensus 165 ~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~--~pfi~is~s~~~~~~ 242 (613)
...|++|+|++++++.+.+++..++. |..+|+++||+||||||||++|+++|++++ .+|+.++++++...+
T Consensus 33 ~~~~~~iiG~~~~~~~l~~~~~~~~~-------~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~ 105 (456)
T 2c9o_A 33 KQAASGLVGQENAREACGVIVELIKS-------KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTE 105 (456)
T ss_dssp CSEETTEESCHHHHHHHHHHHHHHHT-------TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSS
T ss_pred hhchhhccCHHHHHHHHHHHHHHHHh-------CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHh
Confidence 45699999999999999998876654 455779999999999999999999999999 999999999999999
Q ss_pred hhhhHHHHHHHHHHH---HcCCCeEEEEcCCCccccCCccCCc--cc------------------HHHHHHHHHHhh--c
Q 007190 243 VGVGARRVRSLFQAA---KKKAPCIIFIDEIDAVGSTRKQWEG--HT------------------KKTLHQLLVEMD--G 297 (613)
Q Consensus 243 ~g~~~~~vr~lf~~A---~~~~P~ILfIDEiD~l~~~r~~~~~--~~------------------~~~l~~LL~~ld--g 297 (613)
.|.... ++++|..| +...||||||||+|.++.+++.... .. .+..++++..++ +
T Consensus 106 ~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~ 184 (456)
T 2c9o_A 106 IKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKER 184 (456)
T ss_dssp SCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHTT
T ss_pred hhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhcc
Confidence 999887 99999999 7888999999999999887754311 00 012234566654 3
Q ss_pred cccCCceEEEeecCCCCCCChhhcCCCccce--EEEccCC--CHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHH
Q 007190 298 FEQNEGIILMAATNLPDILDPALTRPGRFDR--HIVVPNP--DVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGAD 373 (613)
Q Consensus 298 ~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~--~I~v~~P--d~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgad 373 (613)
......++|++|||+++.+|+++.||||||+ .+.+|.| +.++|.+|++.+.. .|++.++..+.| |+|
T Consensus 185 ~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g--gad 255 (456)
T 2c9o_A 185 VEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG--GQD 255 (456)
T ss_dssp CCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC----------
T ss_pred CCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--hhH
Confidence 3445556777999999999999999999999 5566777 55788888876553 378899999999 999
Q ss_pred HHHHHHH
Q 007190 374 LANLVNI 380 (613)
Q Consensus 374 L~~lv~~ 380 (613)
|.++|+.
T Consensus 256 l~~l~~~ 262 (456)
T 2c9o_A 256 ILSMMGQ 262 (456)
T ss_dssp -------
T ss_pred HHHHHhh
Confidence 9999964
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.91 E-value=1.2e-23 Score=217.52 Aligned_cols=225 Identities=20% Similarity=0.259 Sum_probs=173.9
Q ss_pred CCc-ccCCCHHHHHHHHHHHHHhcCchhhhhcCC---CCCceEEEEccCCChHHHHHHHHHHhc-------CCCeeEeec
Q 007190 167 TFK-DVKGCDDAKQELVEVVEYLKNPSKFTRLGG---KLPKGILLTGAPGTGKTLLAKAIAGEA-------GVPFFYRAG 235 (613)
Q Consensus 167 ~f~-dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~---~~p~gvLL~GPpGTGKT~LAralA~e~-------~~pfi~is~ 235 (613)
.++ +|+|++++|+.+.+++..+..+..+...|. +.+.++||+||||||||++|+++|+.+ ..+++++++
T Consensus 28 ~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 28 ELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp HHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred HHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 455 799999999999999988766666666654 344579999999999999999999987 348999999
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCC-
Q 007190 236 SEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD- 314 (613)
Q Consensus 236 s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~- 314 (613)
+++...+.|.....+..+|..+ .++||||||+|.+...++. .......++.|+..|+. ...++++|++||.++
T Consensus 108 ~~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~-~~~~~~~~~~Ll~~l~~--~~~~~~~i~~~~~~~~ 181 (309)
T 3syl_A 108 DDLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE-RDYGQEAIEILLQVMEN--NRDDLVVILAGYADRM 181 (309)
T ss_dssp GGTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC----CCTHHHHHHHHHHHHH--CTTTCEEEEEECHHHH
T ss_pred HHhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc-ccccHHHHHHHHHHHhc--CCCCEEEEEeCChHHH
Confidence 9999888898888889999887 3579999999999765432 23356788889998885 345678888988653
Q ss_pred ----CCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhc-------CCCCCHHHHHHHHHHHH
Q 007190 315 ----ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARG-------TPGFNGADLANLVNIAA 382 (613)
Q Consensus 315 ----~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~-------t~G~sgadL~~lv~~Aa 382 (613)
.++|+|++ ||+..+.|++|+.+++..|++.++.+.... ++..+..++.. ....+++++.++++.|.
T Consensus 182 ~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~ 259 (309)
T 3syl_A 182 ENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRAR 259 (309)
T ss_dssp HHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHH
T ss_pred HHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHH
Confidence 35789998 999999999999999999999999876544 23334555553 22235899999999998
Q ss_pred HHHHHh----CCCccCHHHHH
Q 007190 383 IKAAVD----GGEKLTATELE 399 (613)
Q Consensus 383 ~~A~~~----~~~~It~~dl~ 399 (613)
..+..+ ....++.+++.
T Consensus 260 ~~~~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 260 LRQANRLFTASSGPLDARALS 280 (309)
T ss_dssp HHHHHHHHHC---CEEHHHHH
T ss_pred HHHHHHHHhccCCCCCHHHHh
Confidence 766544 34556666654
No 33
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.90 E-value=2e-23 Score=221.13 Aligned_cols=250 Identities=19% Similarity=0.256 Sum_probs=170.6
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCC--CeeEeecchhhhhh
Q 007190 165 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV--PFFYRAGSEFEEMF 242 (613)
Q Consensus 165 ~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~--pfi~is~s~~~~~~ 242 (613)
..+|++++|.+++++.+..+...+.. +..+++++||+||||||||++|+++|++++. ||+.+++..+...+
T Consensus 40 ~~~~~~ivG~~~~~~~l~~l~~~~~~-------~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 112 (368)
T 3uk6_A 40 RQASQGMVGQLAARRAAGVVLEMIRE-------GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLE 112 (368)
T ss_dssp CSEETTEESCHHHHHHHHHHHHHHHT-------TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSS
T ss_pred CcchhhccChHHHHHHHHHHHHHHHc-------CCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcc
Confidence 34599999999999998888776654 3335689999999999999999999999874 88888876633221
Q ss_pred -------------------------------------------------hhhhHHHHHHHHHHHHc-----C----CCeE
Q 007190 243 -------------------------------------------------VGVGARRVRSLFQAAKK-----K----APCI 264 (613)
Q Consensus 243 -------------------------------------------------~g~~~~~vr~lf~~A~~-----~----~P~I 264 (613)
.|.....++..|..+.. . .|+|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~v 192 (368)
T 3uk6_A 113 MSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGV 192 (368)
T ss_dssp SCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCE
T ss_pred cchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCce
Confidence 11223445555555432 1 2789
Q ss_pred EEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeec-----------CCCCCCChhhcCCCccceEEEcc
Q 007190 265 IFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAAT-----------NLPDILDPALTRPGRFDRHIVVP 333 (613)
Q Consensus 265 LfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaT-----------N~p~~Ld~aLlRpgRFd~~I~v~ 333 (613)
|||||+|.+. ...++.|+..++... ..++++++. |.+..+++++++ ||.. +.++
T Consensus 193 l~IDEi~~l~----------~~~~~~L~~~le~~~--~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~-i~~~ 257 (368)
T 3uk6_A 193 LFIDEVHMLD----------IESFSFLNRALESDM--APVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI-VSTT 257 (368)
T ss_dssp EEEESGGGSB----------HHHHHHHHHHTTCTT--CCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE-EEEC
T ss_pred EEEhhccccC----------hHHHHHHHHHhhCcC--CCeeeeecccceeeeeccCCCCcccCCHHHHh--hccE-EEec
Confidence 9999999982 456777887777532 345555543 357889999999 9966 8999
Q ss_pred CCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcCCccc
Q 007190 334 NPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRILMGTERK 412 (613)
Q Consensus 334 ~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A~~~v~~g~~~~ 412 (613)
+|+.+++.+|++.++...... ++..+..+++.+.+.+++++.++++.|...|..++...||.++++.+++.++.. .+.
T Consensus 258 ~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~~~~-~~~ 336 (368)
T 3uk6_A 258 PYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDE-SRS 336 (368)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHSBCH-HHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCH-HHH
Confidence 999999999999998765443 445578888888756999999999999999999999999999999998864321 111
Q ss_pred cccchhhhHHHHHHHHhhhHHHHHhc
Q 007190 413 TMFISEESKKLTAYHESGHAIVAFNT 438 (613)
Q Consensus 413 ~~~~~~~~~~~~A~hEaGhAlva~~~ 438 (613)
...+.+.+ +..-++|.++--.-..+
T Consensus 337 ~~~~~~~~-~~~~~~~~~~~~~~~~~ 361 (368)
T 3uk6_A 337 TQYMKEYQ-DAFLFNELKGETMDTSL 361 (368)
T ss_dssp HHHHC---------------------
T ss_pred HHHHHHhh-hhhhhhcCCccccccch
Confidence 12223323 33447777765544433
No 34
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.89 E-value=3.5e-22 Score=209.51 Aligned_cols=219 Identities=20% Similarity=0.191 Sum_probs=171.7
Q ss_pred ccCCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchh
Q 007190 159 VMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 238 (613)
Q Consensus 159 ~~~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~ 238 (613)
+.....+.+|++++|.+++++.+...+...+. ....+.++||+||||||||++|+++|++++.+|+.++++.+
T Consensus 19 ~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~-------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~ 91 (338)
T 3pfi_A 19 YETSLRPSNFDGYIGQESIKKNLNVFIAAAKK-------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMI 91 (338)
T ss_dssp ----CCCCSGGGCCSCHHHHHHHHHHHHHHHH-------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGC
T ss_pred hhhccCCCCHHHhCChHHHHHHHHHHHHHHHh-------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhc
Confidence 44455566999999999999999988875432 23456689999999999999999999999999999999765
Q ss_pred hhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhcccc----------------CC
Q 007190 239 EEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQ----------------NE 302 (613)
Q Consensus 239 ~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~----------------~~ 302 (613)
.. ...+...+.. ...+++|||||||.+. ...++.|+..++.... ..
T Consensus 92 ~~------~~~~~~~~~~--~~~~~vl~lDEi~~l~----------~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~ 153 (338)
T 3pfi_A 92 EK------SGDLAAILTN--LSEGDILFIDEIHRLS----------PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP 153 (338)
T ss_dssp CS------HHHHHHHHHT--CCTTCEEEEETGGGCC----------HHHHHHHHHHHHTSCC---------CCCCCCCCC
T ss_pred cc------hhHHHHHHHh--ccCCCEEEEechhhcC----------HHHHHHHHHHHHhccchhhcccCccccceecCCC
Confidence 32 2233344432 3457899999999983 3455666666664321 12
Q ss_pred ceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHHHHHHH
Q 007190 303 GIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIA 381 (613)
Q Consensus 303 ~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~lv~~A 381 (613)
++++|++||.+..++++|++ ||+..+.+++|+.+++..+++.++...... ++..+..+++.++| +++++.++++.+
T Consensus 154 ~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~ 230 (338)
T 3pfi_A 154 KFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKRV 230 (338)
T ss_dssp CCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHHH
T ss_pred CeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHHH
Confidence 48999999999999999999 999999999999999999999998876543 44457788886665 789999999999
Q ss_pred HHHHHHhCCCccCHHHHHHHHHHH
Q 007190 382 AIKAAVDGGEKLTATELEFAKDRI 405 (613)
Q Consensus 382 a~~A~~~~~~~It~~dl~~A~~~v 405 (613)
...+...+...|+.+++..++...
T Consensus 231 ~~~a~~~~~~~i~~~~~~~~~~~~ 254 (338)
T 3pfi_A 231 RDFADVNDEEIITEKRANEALNSL 254 (338)
T ss_dssp HHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHhhcCCccCHHHHHHHHHHh
Confidence 888888888899999999888764
No 35
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.87 E-value=3.9e-21 Score=199.80 Aligned_cols=215 Identities=24% Similarity=0.246 Sum_probs=165.0
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhhhh
Q 007190 164 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFV 243 (613)
Q Consensus 164 ~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~~~ 243 (613)
.+.+|++++|.+++++.+.+.+..... ....+.++||+||||||||++|++++++++.+|+.++++.+...
T Consensus 7 ~p~~~~~~ig~~~~~~~l~~~l~~~~~-------~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~-- 77 (324)
T 1hqc_A 7 RPKTLDEYIGQERLKQKLRVYLEAAKA-------RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP-- 77 (324)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHHHH-------HCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSH--
T ss_pred CcccHHHhhCHHHHHHHHHHHHHHHHc-------cCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCCh--
Confidence 446899999999999999888765432 12355689999999999999999999999999999998876331
Q ss_pred hhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccc----------------cCCceEEE
Q 007190 244 GVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE----------------QNEGIILM 307 (613)
Q Consensus 244 g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~----------------~~~~ViVI 307 (613)
..+...|..+ ...+++|||||+|.+. ....+.|+..++... ...++++|
T Consensus 78 ----~~l~~~l~~~-~~~~~~l~lDEi~~l~----------~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i 142 (324)
T 1hqc_A 78 ----GDLAAILANS-LEEGDILFIDEIHRLS----------RQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLI 142 (324)
T ss_dssp ----HHHHHHHTTT-CCTTCEEEETTTTSCC----------HHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEE
T ss_pred ----HHHHHHHHHh-ccCCCEEEEECCcccc----------cchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEE
Confidence 1222222221 1457899999999983 233445555555321 11358899
Q ss_pred eecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 007190 308 AATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAA 386 (613)
Q Consensus 308 aaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~ 386 (613)
++||.+..+++++.+ ||+..+.+++|+.+++..+++.++...... ++..+..++..+.| +++++.++++.+...+.
T Consensus 143 ~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a~ 219 (324)
T 1hqc_A 143 GATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRVRDFAQ 219 (324)
T ss_dssp EEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHHTTTST
T ss_pred EeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHH
Confidence 999999999999998 998899999999999999999998765443 34457888888876 67899999998877776
Q ss_pred HhCCCccCHHHHHHHHHHH
Q 007190 387 VDGGEKLTATELEFAKDRI 405 (613)
Q Consensus 387 ~~~~~~It~~dl~~A~~~v 405 (613)
..+...|+.+++..++...
T Consensus 220 ~~~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 220 VAGEEVITRERALEALAAL 238 (324)
T ss_dssp TTSCSCCCHHHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHh
Confidence 6677789999998887764
No 36
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.85 E-value=6e-21 Score=196.50 Aligned_cols=234 Identities=23% Similarity=0.297 Sum_probs=163.2
Q ss_pred cccCCCHHHHHHHHHHHHH-hcCchhhhhc-CCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhh-hhhhh
Q 007190 169 KDVKGCDDAKQELVEVVEY-LKNPSKFTRL-GGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE-MFVGV 245 (613)
Q Consensus 169 ~dV~G~~e~k~~L~eiv~~-l~~p~~~~~l-g~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~-~~~g~ 245 (613)
++|+|++++++.+...+.. +..+.....+ ....|.++||+||||||||++|+++|+.++.+++.++++++.+ .|.|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 3589999999999887754 2222111111 1345779999999999999999999999999999999998865 45553
Q ss_pred h-HHHHHHHHHHH-----HcCCCeEEEEcCCCccccCCccCCcc--cHHHHHHHHHHhhccc--------cCCceEEEee
Q 007190 246 G-ARRVRSLFQAA-----KKKAPCIIFIDEIDAVGSTRKQWEGH--TKKTLHQLLVEMDGFE--------QNEGIILMAA 309 (613)
Q Consensus 246 ~-~~~vr~lf~~A-----~~~~P~ILfIDEiD~l~~~r~~~~~~--~~~~l~~LL~~ldg~~--------~~~~ViVIaa 309 (613)
. ...++.++..+ ....++||||||+|.+.......... .....+.|+..+++.. ...++++|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~ 174 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIAS 174 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEc
Confidence 2 34566666532 11236799999999997664322111 1234677888887632 2346888888
Q ss_pred ----cCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHH-----------hccCCC---CChhcHHHHHhcC-----
Q 007190 310 ----TNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELY-----------LQDKPL---ADDVDVKAIARGT----- 366 (613)
Q Consensus 310 ----TN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~-----------l~~~~l---~~d~dl~~la~~t----- 366 (613)
++.+..+++++++ ||+..+.|++|+.+++.+|++.. +..... -++..+..+++.+
T Consensus 175 ~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~ 252 (310)
T 1ofh_A 175 GAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNE 252 (310)
T ss_dssp ECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHH
T ss_pred CCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcc
Confidence 4577889999998 99999999999999999999841 111221 1344466677665
Q ss_pred --CCCCHHHHHHHHHHHHHHHHHhC-----CC-ccCHHHHHHHHHH
Q 007190 367 --PGFNGADLANLVNIAAIKAAVDG-----GE-KLTATELEFAKDR 404 (613)
Q Consensus 367 --~G~sgadL~~lv~~Aa~~A~~~~-----~~-~It~~dl~~A~~~ 404 (613)
.+.+.+++.++++.+...+..+. .. .|+.++++.++..
T Consensus 253 ~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~ 298 (310)
T 1ofh_A 253 KTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGE 298 (310)
T ss_dssp HSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCS
T ss_pred cccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHh
Confidence 24588999999988775544322 11 4999999888764
No 37
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.84 E-value=1e-20 Score=192.78 Aligned_cols=224 Identities=19% Similarity=0.237 Sum_probs=152.6
Q ss_pred CcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchh-hhhhhhhh
Q 007190 168 FKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF-EEMFVGVG 246 (613)
Q Consensus 168 f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~-~~~~~g~~ 246 (613)
.+.++|.+++.+.+......+.. .+...+...++++||+||||||||++|+++|++.+.||+.+++++. .....+..
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~--~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQ--QTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHH--HHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred hcCCCCccHHHHHHHHHHHHHHH--HHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 45678988876666663221111 1122245677899999999999999999999999999999988752 22122233
Q ss_pred HHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccc-cCCceEEEeecCCCCCCCh-hhcCCC
Q 007190 247 ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE-QNEGIILMAATNLPDILDP-ALTRPG 324 (613)
Q Consensus 247 ~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~-~~~~ViVIaaTN~p~~Ld~-aLlRpg 324 (613)
...++.+|..+....+++|||||+|.+.+.+..........++.|...+++.. ....++||+|||.++.+++ .+.+
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~-- 187 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLN-- 187 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTT--
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhc--
Confidence 46788899999888899999999999976654333334566677777777654 3457889999999988887 4554
Q ss_pred ccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCC----CHHHHHHHHHHHHHHHHHhCCCccCHHHHHH
Q 007190 325 RFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGF----NGADLANLVNIAAIKAAVDGGEKLTATELEF 400 (613)
Q Consensus 325 RFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~----sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~ 400 (613)
||+..+.+|+++. |.+|.+.......+ ++.++..+++.+.|+ +.+++.++++.|.. .......+++..
T Consensus 188 rf~~~i~~p~l~~--r~~i~~i~~~~~~~-~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~-----~~~~~~~~~~~~ 259 (272)
T 1d2n_A 188 AFSTTIHVPNIAT--GEQLLEALELLGNF-KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQ-----MDPEYRVRKFLA 259 (272)
T ss_dssp TSSEEEECCCEEE--HHHHHHHHHHHTCS-CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTT-----SCGGGHHHHHHH
T ss_pred ccceEEcCCCccH--HHHHHHHHHhcCCC-CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhh-----hchHHHHHHHHH
Confidence 9999888865554 44444443333333 466788899988886 56677777765532 223344555555
Q ss_pred HHH
Q 007190 401 AKD 403 (613)
Q Consensus 401 A~~ 403 (613)
++.
T Consensus 260 ~l~ 262 (272)
T 1d2n_A 260 LLR 262 (272)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 38
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.82 E-value=3.4e-19 Score=172.69 Aligned_cols=205 Identities=20% Similarity=0.199 Sum_probs=149.6
Q ss_pred cCCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc-----CCCeeEee
Q 007190 160 MPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRA 234 (613)
Q Consensus 160 ~~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~-----~~pfi~is 234 (613)
.....+.+|++++|.+++++.+.+.+.. .. +.+++|+||||||||++++++++++ ..+++.++
T Consensus 8 ~~~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~-~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~ 75 (226)
T 2chg_A 8 VEKYRPRTLDEVVGQDEVIQRLKGYVER-----------KN-IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN 75 (226)
T ss_dssp HHHTSCSSGGGCCSCHHHHHHHHHHHHT-----------TC-CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEE
T ss_pred HHhcCCCCHHHHcCcHHHHHHHHHHHhC-----------CC-CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEec
Confidence 3345567899999999999888877641 12 2359999999999999999999975 45688888
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHH------cCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEe
Q 007190 235 GSEFEEMFVGVGARRVRSLFQAAK------KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMA 308 (613)
Q Consensus 235 ~s~~~~~~~g~~~~~vr~lf~~A~------~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIa 308 (613)
++..... ..+...+.... ...+++|||||+|.+.. ...+.|+..++.. ..++.+|+
T Consensus 76 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~----------~~~~~l~~~l~~~--~~~~~~i~ 137 (226)
T 2chg_A 76 ASDERGI------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA----------DAQAALRRTMEMY--SKSCRFIL 137 (226)
T ss_dssp TTCTTCH------HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH----------HHHHHHHHHHHHT--TTTEEEEE
T ss_pred cccccCh------HHHHHHHHHHhcccCCCccCceEEEEeChhhcCH----------HHHHHHHHHHHhc--CCCCeEEE
Confidence 7654321 12222222221 24688999999999832 3445566666642 34678888
Q ss_pred ecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Q 007190 309 ATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAV 387 (613)
Q Consensus 309 aTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~ 387 (613)
+||.+..+++++.+ ||. .+.+++|+.++..++++.++...+.. ++..+..+++.+.| +++.+.++++.++..+
T Consensus 138 ~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~~-- 211 (226)
T 2chg_A 138 SCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAIG-- 211 (226)
T ss_dssp EESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC--
T ss_pred EeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC--
Confidence 99999999999998 886 89999999999999999988654433 34457778877765 7777777777666443
Q ss_pred hCCCccCHHHHHHHHH
Q 007190 388 DGGEKLTATELEFAKD 403 (613)
Q Consensus 388 ~~~~~It~~dl~~A~~ 403 (613)
+.||.+|+++++.
T Consensus 212 ---~~I~~~~v~~~~~ 224 (226)
T 2chg_A 212 ---EVVDADTIYQITA 224 (226)
T ss_dssp ---SCBCHHHHHHHHH
T ss_pred ---ceecHHHHHHHhc
Confidence 6899999998865
No 39
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.82 E-value=3e-21 Score=209.84 Aligned_cols=170 Identities=22% Similarity=0.220 Sum_probs=82.0
Q ss_pred cccCCCHHHHHHHHHHHHH-hcCchhhhhcCC-CCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhh-hhhhh
Q 007190 169 KDVKGCDDAKQELVEVVEY-LKNPSKFTRLGG-KLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE-MFVGV 245 (613)
Q Consensus 169 ~dV~G~~e~k~~L~eiv~~-l~~p~~~~~lg~-~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~-~~~g~ 245 (613)
++|+|++++|+.|...+.. ++.+..+..+.. .+|+++||+||||||||++|+++|+.++.+|+.++++.+.+ .|+|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 4789999999999887754 444444443333 35789999999999999999999999999999999999988 58885
Q ss_pred -hHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEee-cCCCCCCChhhcCC
Q 007190 246 -GARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAA-TNLPDILDPALTRP 323 (613)
Q Consensus 246 -~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaa-TN~p~~Ld~aLlRp 323 (613)
....++.+|..+... +++||+|.+.... ......+++++|+.+||++.....+ +++ ||+|+.||++|+||
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~~~--~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~aL~rg 166 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRARA--EDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKKLREG 166 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhccc--hhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHHHHcC
Confidence 788999999998765 4589998875432 2234578999999999999776655 454 99999999999999
Q ss_pred CccceEEEccCCCHh-hHHHHHHH
Q 007190 324 GRFDRHIVVPNPDVR-GRQEILEL 346 (613)
Q Consensus 324 gRFd~~I~v~~Pd~~-~R~~IL~~ 346 (613)
||||+.|++++|+.. .|.+|+..
T Consensus 167 gr~D~~i~i~lP~~~~~~~ei~~~ 190 (444)
T 1g41_A 167 QLDDKEIEIDVSAGVSMGVEIMAP 190 (444)
T ss_dssp ------------------------
T ss_pred CCcceEEEEcCCCCccchhhhhcC
Confidence 999999999999987 78888743
No 40
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.82 E-value=2.8e-20 Score=208.39 Aligned_cols=223 Identities=22% Similarity=0.236 Sum_probs=149.3
Q ss_pred CCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhh-----
Q 007190 166 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE----- 240 (613)
Q Consensus 166 ~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~----- 240 (613)
.-++|++|++++++.+.+.+..-.... .. .+..++|+||||||||++|+++|+.++.++..++++.+..
T Consensus 78 ~l~~di~G~~~vk~~i~~~~~l~~~~~-----~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~ 151 (543)
T 3m6a_A 78 LLDEEHHGLEKVKERILEYLAVQKLTK-----SL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIR 151 (543)
T ss_dssp THHHHCSSCHHHHHHHHHHHHHHHHSS-----SC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhcc-----cC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhh
Confidence 346789999999999987654311110 11 3458999999999999999999999999999999877543
Q ss_pred ----hhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhcccc-------------CCc
Q 007190 241 ----MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQ-------------NEG 303 (613)
Q Consensus 241 ----~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~-------------~~~ 303 (613)
.|+|.....+...|..+....| ||||||||.+...+. ....+.|+..||.... ..+
T Consensus 152 g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~------~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~ 224 (543)
T 3m6a_A 152 GHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR------GDPSSAMLEVLDPEQNSSFSDHYIEETFDLSK 224 (543)
T ss_dssp ------------CHHHHHHTTCSSSE-EEEEEESSSCC---------------CCGGGTCTTTTTBCCCSSSCCCCBCSS
T ss_pred hHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc------cCHHHHHHHHHhhhhcceeecccCCeeecccc
Confidence 5667777777888888776666 999999999965432 1245567777764221 156
Q ss_pred eEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhc-----cCCCC------ChhcHHHHHhcCC-CCCH
Q 007190 304 IILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQ-----DKPLA------DDVDVKAIARGTP-GFNG 371 (613)
Q Consensus 304 ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~-----~~~l~------~d~dl~~la~~t~-G~sg 371 (613)
+++|+|||.++.++++|++ ||+ .|.++.|+.+++..|++.|+. ...+. ++..+..++.... ....
T Consensus 225 v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~v 301 (543)
T 3m6a_A 225 VLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGV 301 (543)
T ss_dssp CEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSS
T ss_pred eEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhch
Confidence 8999999999999999999 995 799999999999999999872 22221 2333555555333 2345
Q ss_pred HHHHHHHHHHHHHH----HHh--CCCccCHHHHHHHHHH
Q 007190 372 ADLANLVNIAAIKA----AVD--GGEKLTATELEFAKDR 404 (613)
Q Consensus 372 adL~~lv~~Aa~~A----~~~--~~~~It~~dl~~A~~~ 404 (613)
++|++.+..+...+ ... +...||.+++++++..
T Consensus 302 R~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~ 340 (543)
T 3m6a_A 302 RSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGK 340 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCS
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCC
Confidence 66655554444443 333 3346999999988754
No 41
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.82 E-value=1.2e-19 Score=189.29 Aligned_cols=207 Identities=21% Similarity=0.258 Sum_probs=145.3
Q ss_pred cccCCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecch
Q 007190 158 EVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE 237 (613)
Q Consensus 158 ~~~~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~ 237 (613)
++.....+.+|++++|++++++.+++.+. .++.|..+|++||||||||++|+++|++++.+++++++++
T Consensus 15 ~~~~k~rP~~~~~ivg~~~~~~~l~~~l~-----------~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~ 83 (324)
T 3u61_B 15 ILEQKYRPSTIDECILPAFDKETFKSITS-----------KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSD 83 (324)
T ss_dssp SHHHHSCCCSTTTSCCCHHHHHHHHHHHH-----------TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTT
T ss_pred hHHHhhCCCCHHHHhCcHHHHHHHHHHHH-----------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccc
Confidence 55666777899999999999999888776 3456778899999999999999999999999999999887
Q ss_pred hhhhhhhhhHHHHHHHHHHHHc-----CCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCC
Q 007190 238 FEEMFVGVGARRVRSLFQAAKK-----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNL 312 (613)
Q Consensus 238 ~~~~~~g~~~~~vr~lf~~A~~-----~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~ 312 (613)
.. ...++..+..... ..++||||||+|.+.+ ....+.|+..++.. ..++.+|++||.
T Consensus 84 ~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~---------~~~~~~L~~~le~~--~~~~~iI~~~n~ 145 (324)
T 3u61_B 84 CK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL---------AESQRHLRSFMEAY--SSNCSIIITANN 145 (324)
T ss_dssp CC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG---------HHHHHHHHHHHHHH--GGGCEEEEEESS
T ss_pred cC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc---------HHHHHHHHHHHHhC--CCCcEEEEEeCC
Confidence 43 2234443333222 2578999999999941 23455666666643 345788889999
Q ss_pred CCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHh-------ccCCCC-Ch-hcHHHHHhcCCCCCHHHHHHHHHHHHH
Q 007190 313 PDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYL-------QDKPLA-DD-VDVKAIARGTPGFNGADLANLVNIAAI 383 (613)
Q Consensus 313 p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l-------~~~~l~-~d-~dl~~la~~t~G~sgadL~~lv~~Aa~ 383 (613)
+..+++++++ || ..+.|++|+.++|.+|++.++ ...... ++ ..+..+++.+.| +.+++.+.++.++
T Consensus 146 ~~~l~~~l~s--R~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g-d~R~a~~~L~~~~- 220 (324)
T 3u61_B 146 IDGIIKPLQS--RC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFP-DFRKTIGELDSYS- 220 (324)
T ss_dssp GGGSCTTHHH--HS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCS-CTTHHHHHHHHHG-
T ss_pred ccccCHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCC-CHHHHHHHHHHHh-
Confidence 9999999998 99 479999999999877655543 222222 23 557788887765 4455555555443
Q ss_pred HHHHhCCCccCHHHHHHHHH
Q 007190 384 KAAVDGGEKLTATELEFAKD 403 (613)
Q Consensus 384 ~A~~~~~~~It~~dl~~A~~ 403 (613)
....||.+++..+..
T Consensus 221 -----~~~~i~~~~v~~~~~ 235 (324)
T 3u61_B 221 -----SKGVLDAGILSLVTN 235 (324)
T ss_dssp -----GGTCBCC--------
T ss_pred -----ccCCCCHHHHHHHhC
Confidence 334688888877654
No 42
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.81 E-value=4.2e-19 Score=187.73 Aligned_cols=223 Identities=21% Similarity=0.245 Sum_probs=162.4
Q ss_pred CCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc---------CCCeeEeecch
Q 007190 167 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---------GVPFFYRAGSE 237 (613)
Q Consensus 167 ~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~---------~~pfi~is~s~ 237 (613)
.+++++|.++..+.+...+.... ....+.+++|+||||||||++++++++++ +.++++++|..
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~--------~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPAL--------RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGT--------SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHH--------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence 45889999998888877654221 12456789999999999999999999988 88999999875
Q ss_pred hhhhh----------------hhh-hHHHHHHHHHHHHc-CCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccc
Q 007190 238 FEEMF----------------VGV-GARRVRSLFQAAKK-KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE 299 (613)
Q Consensus 238 ~~~~~----------------~g~-~~~~vr~lf~~A~~-~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~ 299 (613)
....+ .+. .......++..... ..|++|||||+|.+...+ .....+..++..++...
T Consensus 89 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~-----~~~~~l~~l~~~~~~~~ 163 (387)
T 2v1u_A 89 RETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP-----GGQDLLYRITRINQELG 163 (387)
T ss_dssp SCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST-----THHHHHHHHHHGGGCC-
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC-----CCChHHHhHhhchhhcC
Confidence 42211 011 11224445554443 348899999999995431 13467777777766443
Q ss_pred cCCceEEEeecCCC---CCCChhhcCCCccce-EEEccCCCHhhHHHHHHHHhcc--CC-CCChhcHHHHHhcCC---CC
Q 007190 300 QNEGIILMAATNLP---DILDPALTRPGRFDR-HIVVPNPDVRGRQEILELYLQD--KP-LADDVDVKAIARGTP---GF 369 (613)
Q Consensus 300 ~~~~ViVIaaTN~p---~~Ld~aLlRpgRFd~-~I~v~~Pd~~~R~~IL~~~l~~--~~-l~~d~dl~~la~~t~---G~ 369 (613)
.+.++++|++||.+ +.+++.+.+ ||.. .+.+++|+.+++.+|++.++.. .. ..++..+..+++.+. |
T Consensus 164 ~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G- 240 (387)
T 2v1u_A 164 DRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHG- 240 (387)
T ss_dssp ----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSC-
T ss_pred CCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcc-
Confidence 25678899999987 678999988 8875 8999999999999999998764 11 123334666766665 5
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 007190 370 NGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRI 405 (613)
Q Consensus 370 sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A~~~v 405 (613)
+++.+.++++.|...|..++...|+.+++..|+.+.
T Consensus 241 ~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 241 DARRALDLLRVAGEIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 678889999999988888888899999999998876
No 43
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.81 E-value=2.5e-19 Score=195.78 Aligned_cols=220 Identities=18% Similarity=0.240 Sum_probs=156.4
Q ss_pred CCCCCcccC-CCH--HHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc-----CCCeeEeec
Q 007190 164 NVKTFKDVK-GCD--DAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAG 235 (613)
Q Consensus 164 ~~~~f~dV~-G~~--e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~-----~~pfi~is~ 235 (613)
+..+|++++ |.. .+...+..+. ..+ .. +.+++||||||||||+||+++++++ +.+++++++
T Consensus 100 ~~~tfd~fv~g~~n~~a~~~~~~~a---~~~-------~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 100 PDYTFENFVVGPGNSFAYHAALEVA---KHP-------GR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp TTCSGGGCCCCTTTHHHHHHHHHHH---HST-------TS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH
T ss_pred CCCChhhcCCCCchHHHHHHHHHHH---hCC-------CC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 345899988 543 3333333332 222 12 5689999999999999999999988 889999999
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCCC
Q 007190 236 SEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 315 (613)
Q Consensus 236 s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~ 315 (613)
.++...+.+.........|.......|++|||||+|.+..+ ......|+..++........+||++.+.+..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~--------~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~ 240 (440)
T 2z4s_A 169 EKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK--------TGVQTELFHTFNELHDSGKQIVICSDREPQK 240 (440)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC--------HHHHHHHHHHHHHHHTTTCEEEEEESSCGGG
T ss_pred HHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC--------hHHHHHHHHHHHHHHHCCCeEEEEECCCHHH
Confidence 98866555433322222344333336789999999999543 1233445555544334445666666665554
Q ss_pred ---CChhhcCCCccc--eEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC
Q 007190 316 ---LDPALTRPGRFD--RHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDG 389 (613)
Q Consensus 316 ---Ld~aLlRpgRFd--~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~ 389 (613)
+++++++ ||. ..+.+++|+.++|.+|++.++...++. ++..+..|+..+.| +.+++.++++.+...|...+
T Consensus 241 l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a~~~~ 317 (440)
T 2z4s_A 241 LSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETTG 317 (440)
T ss_dssp CSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhC
Confidence 7899998 896 789999999999999999988654332 33347889988876 89999999999988877665
Q ss_pred CCccCHHHHHHHHHHHh
Q 007190 390 GEKLTATELEFAKDRIL 406 (613)
Q Consensus 390 ~~~It~~dl~~A~~~v~ 406 (613)
..||.+++.+++....
T Consensus 318 -~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 318 -KEVDLKEAILLLKDFI 333 (440)
T ss_dssp -SCCCHHHHHHHTSTTT
T ss_pred -CCCCHHHHHHHHHHHh
Confidence 4799999998877644
No 44
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.80 E-value=2.6e-19 Score=196.00 Aligned_cols=208 Identities=24% Similarity=0.306 Sum_probs=152.7
Q ss_pred CCCCCCCCcccCCCHHHH---HHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecch
Q 007190 161 PEKNVKTFKDVKGCDDAK---QELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE 237 (613)
Q Consensus 161 ~~~~~~~f~dV~G~~e~k---~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~ 237 (613)
....+.+|++++|+++++ ..|...+.. .+. .++||+||||||||++|+++|+.++.+|+.+++..
T Consensus 18 ~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~-----------~~~-~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~ 85 (447)
T 3pvs_A 18 ARMRPENLAQYIGQQHLLAAGKPLPRAIEA-----------GHL-HSMILWGPPGTGKTTLAEVIARYANADVERISAVT 85 (447)
T ss_dssp HHTCCCSTTTCCSCHHHHSTTSHHHHHHHH-----------TCC-CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT
T ss_pred HHhCCCCHHHhCCcHHHHhchHHHHHHHHc-----------CCC-cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc
Confidence 344567899999999998 566665542 122 48999999999999999999999999999998754
Q ss_pred hhhhhhhhhHHHHHHHHHHHH----cCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeec--C
Q 007190 238 FEEMFVGVGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAAT--N 311 (613)
Q Consensus 238 ~~~~~~g~~~~~vr~lf~~A~----~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaT--N 311 (613)
. +.+.++.+|..+. ...++||||||||.+... .++.|+..++. ..+++|++| |
T Consensus 86 ~-------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~----------~q~~LL~~le~----~~v~lI~att~n 144 (447)
T 3pvs_A 86 S-------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS----------QQDAFLPHIED----GTITFIGATTEN 144 (447)
T ss_dssp C-------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC----------------CCHHHHHT----TSCEEEEEESSC
T ss_pred C-------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH----------HHHHHHHHHhc----CceEEEecCCCC
Confidence 3 2334555555554 346789999999999432 34456666663 446777766 4
Q ss_pred CCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccC-------CC-CChhcHHHHHhcCCCCCHHHHHHHHHHHHH
Q 007190 312 LPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK-------PL-ADDVDVKAIARGTPGFNGADLANLVNIAAI 383 (613)
Q Consensus 312 ~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~-------~l-~~d~dl~~la~~t~G~sgadL~~lv~~Aa~ 383 (613)
....++++|++ ||. .+.+++|+.+++..+++.++... .. .++..+..+++.+.| +.+++.++++.+..
T Consensus 145 ~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~a~~ 220 (447)
T 3pvs_A 145 PSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEMMAD 220 (447)
T ss_dssp GGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHHHHH
T ss_pred cccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHHHHH
Confidence 44589999999 885 78899999999999999998762 11 134457788888765 78899999998877
Q ss_pred HHHHh--CCCccCHHHHHHHHHHH
Q 007190 384 KAAVD--GGEKLTATELEFAKDRI 405 (613)
Q Consensus 384 ~A~~~--~~~~It~~dl~~A~~~v 405 (613)
.+... +...||.+++.+++.+.
T Consensus 221 ~a~~~~~~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 221 MAEVDDSGKRVLKPELLTEIAGER 244 (447)
T ss_dssp HSCBCTTSCEECCHHHHHHHHTCC
T ss_pred hcccccCCCCccCHHHHHHHHhhh
Confidence 65423 44679999999887653
No 45
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.80 E-value=4.4e-19 Score=188.52 Aligned_cols=217 Identities=23% Similarity=0.276 Sum_probs=149.0
Q ss_pred cCCCHHHHHHHHHHHHHh-cCchhhh--hcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhh-hhhhh
Q 007190 171 VKGCDDAKQELVEVVEYL-KNPSKFT--RLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM-FVGVG 246 (613)
Q Consensus 171 V~G~~e~k~~L~eiv~~l-~~p~~~~--~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~-~~g~~ 246 (613)
|+|++++++.+...+... +...... .....++.++||+||||||||++|+++|+.++.||+.++++++... |.|..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 699999999999877431 1111000 0112356899999999999999999999999999999999988754 77765
Q ss_pred -HHHHHHHHHHH----HcCCCeEEEEcCCCccccCCccCCcc----cHHHHHHHHHHhhccc------------------
Q 007190 247 -ARRVRSLFQAA----KKKAPCIIFIDEIDAVGSTRKQWEGH----TKKTLHQLLVEMDGFE------------------ 299 (613)
Q Consensus 247 -~~~vr~lf~~A----~~~~P~ILfIDEiD~l~~~r~~~~~~----~~~~l~~LL~~ldg~~------------------ 299 (613)
...++.+|..+ ....|+||||||+|.+...++..... ...+++.||..|++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~ 176 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQ 176 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCC
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEE
Confidence 56677787765 33457899999999998765432211 2347888999998531
Q ss_pred -cCCceEEEeecCCC----------CC-----------------------------------CChhhcCCCccceEEEcc
Q 007190 300 -QNEGIILMAATNLP----------DI-----------------------------------LDPALTRPGRFDRHIVVP 333 (613)
Q Consensus 300 -~~~~ViVIaaTN~p----------~~-----------------------------------Ld~aLlRpgRFd~~I~v~ 333 (613)
...++++|+++|.. .. ++|+|+. ||+..+.++
T Consensus 177 i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~~ 254 (363)
T 3hws_A 177 VDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATLN 254 (363)
T ss_dssp CCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEECC
T ss_pred EECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeecC
Confidence 12334455555532 11 6788887 999999999
Q ss_pred CCCHhhHHHHHHH----Hhc-------cCCCC---ChhcHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHhC
Q 007190 334 NPDVRGRQEILEL----YLQ-------DKPLA---DDVDVKAIAR--GTPGFNGADLANLVNIAAIKAAVDG 389 (613)
Q Consensus 334 ~Pd~~~R~~IL~~----~l~-------~~~l~---~d~dl~~la~--~t~G~sgadL~~lv~~Aa~~A~~~~ 389 (613)
+|+.+++.+|+.. +++ ..... ++..+..|+. ....+..++|+++++++...+..+.
T Consensus 255 pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~ 326 (363)
T 3hws_A 255 ELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDL 326 (363)
T ss_dssp CCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHST
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhc
Confidence 9999999999886 221 11211 2333556664 2334556889999888877665543
No 46
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.80 E-value=1.4e-18 Score=181.47 Aligned_cols=197 Identities=21% Similarity=0.304 Sum_probs=138.8
Q ss_pred CCCCCcccC-C--CHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecch
Q 007190 164 NVKTFKDVK-G--CDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSE 237 (613)
Q Consensus 164 ~~~~f~dV~-G--~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~ 237 (613)
+..+|++++ | ...+...+..++. .+ ...+.+++|+||||||||++|+++++++ +.+++++++.+
T Consensus 6 ~~~~f~~fv~g~~~~~a~~~~~~~~~---~~-------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~ 75 (324)
T 1l8q_A 6 PKYTLENFIVGEGNRLAYEVVKEALE---NL-------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD 75 (324)
T ss_dssp TTCCSSSCCCCTTTHHHHHHHHHHHH---TT-------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCCcccCCCCCcHHHHHHHHHHHHh---Cc-------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHH
Confidence 346899997 4 4445555544443 22 2245689999999999999999999988 89999999998
Q ss_pred hhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCC---
Q 007190 238 FEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD--- 314 (613)
Q Consensus 238 ~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~--- 314 (613)
+...+.+.........|..... .+++|||||+|.+..++ .....++..++........+|+++++.|.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~~~--------~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~ 146 (324)
T 1l8q_A 76 FAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSGKE--------RTQIEFFHIFNTLYLLEKQIILASDRHPQKLD 146 (324)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTTCH--------HHHHHHHHHHHHHHHTTCEEEEEESSCGGGCT
T ss_pred HHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccCCh--------HHHHHHHHHHHHHHHCCCeEEEEecCChHHHH
Confidence 8766554433222233333322 37899999999985421 23334444444333344567777777776
Q ss_pred CCChhhcCCCccc--eEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 007190 315 ILDPALTRPGRFD--RHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIK 384 (613)
Q Consensus 315 ~Ld~aLlRpgRFd--~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~lv~~Aa~~ 384 (613)
.+++++.+ ||+ ..+.+++ +.+++.+|++.++...+.. ++..+..++..+ | +.+++.++++.+...
T Consensus 147 ~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 147 GVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIKLIKLK 214 (324)
T ss_dssp TSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHHHHHHH
T ss_pred HhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHHHHHHc
Confidence 68999998 997 6889999 9999999999998765443 344578888888 4 788999998877654
No 47
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.80 E-value=1.7e-18 Score=169.44 Aligned_cols=206 Identities=20% Similarity=0.302 Sum_probs=151.8
Q ss_pred cCCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCe---------
Q 007190 160 MPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPF--------- 230 (613)
Q Consensus 160 ~~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pf--------- 230 (613)
.+...+.+|++++|.++.++.|.+.+.. .+.|..++|+||||||||+++++++++.+...
T Consensus 14 ~~~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~ 82 (250)
T 1njg_A 14 ARKWRPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV 82 (250)
T ss_dssp HHHTCCCSGGGCCSCHHHHHHHHHHHHH-----------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSC
T ss_pred hhccCCccHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 3344566899999999999988887752 23456899999999999999999999875422
Q ss_pred ---------------eEeecchhhhhhhhhhHHHHHHHHHHHH----cCCCeEEEEcCCCccccCCccCCcccHHHHHHH
Q 007190 231 ---------------FYRAGSEFEEMFVGVGARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQL 291 (613)
Q Consensus 231 ---------------i~is~s~~~~~~~g~~~~~vr~lf~~A~----~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~L 291 (613)
+.++... ......++.++..+. ...|.+|+|||+|.+ ....++.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l----------~~~~~~~l 146 (250)
T 1njg_A 83 CDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML----------SRHSFNAL 146 (250)
T ss_dssp SHHHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGS----------CHHHHHHH
T ss_pred cHHHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccc----------cHHHHHHH
Confidence 1111111 112234555555443 235789999999998 23466677
Q ss_pred HHHhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCC
Q 007190 292 LVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFN 370 (613)
Q Consensus 292 L~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~s 370 (613)
+..++. ...++++|++||.+..+++++.+ |+ ..+.+++|+.++..++++.++...... ++..+..+++.+.| +
T Consensus 147 ~~~l~~--~~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~ 220 (250)
T 1njg_A 147 LKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-S 220 (250)
T ss_dssp HHHHHS--CCTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-C
T ss_pred HHHHhc--CCCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-C
Confidence 777764 34568888899999899999988 76 789999999999999999998765433 34457788898877 8
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 007190 371 GADLANLVNIAAIKAAVDGGEKLTATELEFAK 402 (613)
Q Consensus 371 gadL~~lv~~Aa~~A~~~~~~~It~~dl~~A~ 402 (613)
++.+.++++.+... +...||.+++++++
T Consensus 221 ~~~~~~~~~~~~~~----~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 221 LRDALSLTDQAIAS----GDGQVSTQAVSAML 248 (250)
T ss_dssp HHHHHHHHHHHHTT----TTSSBCHHHHHHHS
T ss_pred HHHHHHHHHHHHhc----cCceecHHHHHHHh
Confidence 99999999877533 34589999998764
No 48
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.80 E-value=2.9e-19 Score=199.01 Aligned_cols=228 Identities=17% Similarity=0.217 Sum_probs=150.7
Q ss_pred ccccCCCCCCCCcccCCCHHHHHHHHHHHHHhc--CchhhhhcCC---CCCceEEEEccCCChHHHHHHHHHHhcCCCee
Q 007190 157 KEVMPEKNVKTFKDVKGCDDAKQELVEVVEYLK--NPSKFTRLGG---KLPKGILLTGAPGTGKTLLAKAIAGEAGVPFF 231 (613)
Q Consensus 157 ~~~~~~~~~~~f~dV~G~~e~k~~L~eiv~~l~--~p~~~~~lg~---~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi 231 (613)
..|.....+.+|+|++|.+++++.|.+++.... .+..|...|. ..++++||+||||||||++|+++|++++.+++
T Consensus 27 ~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i 106 (516)
T 1sxj_A 27 KLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDIL 106 (516)
T ss_dssp CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 356666777899999999999999988876422 1222333333 36789999999999999999999999999999
Q ss_pred EeecchhhhhhhhhhH-------HHHHHHHHHH-----HcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccc
Q 007190 232 YRAGSEFEEMFVGVGA-------RRVRSLFQAA-----KKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE 299 (613)
Q Consensus 232 ~is~s~~~~~~~g~~~-------~~vr~lf~~A-----~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~ 299 (613)
+++++++......... ..+..+|..+ ....++||||||+|.+.... ...++.|+..++.
T Consensus 107 ~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~-------~~~l~~L~~~l~~-- 177 (516)
T 1sxj_A 107 EQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD-------RGGVGQLAQFCRK-- 177 (516)
T ss_dssp EECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS-------TTHHHHHHHHHHH--
T ss_pred EEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh-------HHHHHHHHHHHHh--
Confidence 9999887554321110 0123344433 23568899999999996532 2234555555553
Q ss_pred cCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHHHH
Q 007190 300 QNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLV 378 (613)
Q Consensus 300 ~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~lv 378 (613)
.+..+++|+++..+..+++ +. |+...+.|++|+.+++.++++..+....+. ++..+..|++.+.| +.+.+.+++
T Consensus 178 ~~~~iIli~~~~~~~~l~~-l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~G-diR~~i~~L 252 (516)
T 1sxj_A 178 TSTPLILICNERNLPKMRP-FD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG-DIRQVINLL 252 (516)
T ss_dssp CSSCEEEEESCTTSSTTGG-GT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT-CHHHHHHHH
T ss_pred cCCCEEEEEcCCCCccchh-hH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHH
Confidence 3344666665544444543 44 345799999999999999998877553322 33447888888765 344444444
Q ss_pred HHHHHHHHHhCCCccCHHHHHHHHH
Q 007190 379 NIAAIKAAVDGGEKLTATELEFAKD 403 (613)
Q Consensus 379 ~~Aa~~A~~~~~~~It~~dl~~A~~ 403 (613)
+.+ +. +...|+.+++..++.
T Consensus 253 ~~~---~~--~~~~It~~~v~~~~~ 272 (516)
T 1sxj_A 253 STI---ST--TTKTINHENINEISK 272 (516)
T ss_dssp THH---HH--HSSCCCTTHHHHHHH
T ss_pred HHH---Hh--cCCCCchHHHHHHHH
Confidence 332 22 345788888876655
No 49
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.79 E-value=2.7e-18 Score=169.43 Aligned_cols=205 Identities=16% Similarity=0.121 Sum_probs=142.9
Q ss_pred CCCCcccCCC---HHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchh
Q 007190 165 VKTFKDVKGC---DDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEF 238 (613)
Q Consensus 165 ~~~f~dV~G~---~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~ 238 (613)
..+|++++|. +++.+.+..++. . ..+.+++|+||||||||++|+++++++ +.++++++++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~~~~---~---------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 24 DETFTSYYPAAGNDELIGALKSAAS---G---------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp TCSTTTSCC--CCHHHHHHHHHHHH---T---------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CCChhhccCCCCCHHHHHHHHHHHh---C---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 4689999973 345444444432 1 135689999999999999999999876 478899999887
Q ss_pred hhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCce-EEEeecCCCC---
Q 007190 239 EEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGI-ILMAATNLPD--- 314 (613)
Q Consensus 239 ~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~V-iVIaaTN~p~--- 314 (613)
...+... +.. ...|++|||||+|.+... ......|+..++.......+ +|+++++.+.
T Consensus 92 ~~~~~~~--------~~~--~~~~~vliiDe~~~~~~~--------~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~ 153 (242)
T 3bos_A 92 ASISTAL--------LEG--LEQFDLICIDDVDAVAGH--------PLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAG 153 (242)
T ss_dssp GGSCGGG--------GTT--GGGSSEEEEETGGGGTTC--------HHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTT
T ss_pred HHHHHHH--------HHh--ccCCCEEEEeccccccCC--------HHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHH
Confidence 6543211 111 134679999999998432 11233344444433333334 5555554454
Q ss_pred CCChhhcCCCccc--eEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCC
Q 007190 315 ILDPALTRPGRFD--RHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGE 391 (613)
Q Consensus 315 ~Ld~aLlRpgRFd--~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~ 391 (613)
.+++++.+ ||. ..+.+++|+.+++.++++.++...+.. ++..+..+++.+.| +.+++.++++.+...|...+ .
T Consensus 154 ~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~~~-~ 229 (242)
T 3bos_A 154 FVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASMVHQ-R 229 (242)
T ss_dssp CCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHT-C
T ss_pred Hhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHhC-C
Confidence 45688887 886 899999999999999999998765443 34457788888876 89999999999888775554 5
Q ss_pred ccCHHHHHHHHH
Q 007190 392 KLTATELEFAKD 403 (613)
Q Consensus 392 ~It~~dl~~A~~ 403 (613)
.||.++++.++.
T Consensus 230 ~It~~~v~~~l~ 241 (242)
T 3bos_A 230 KLTIPFVKEMLR 241 (242)
T ss_dssp CCCHHHHHHHHT
T ss_pred CCcHHHHHHHhh
Confidence 699999988763
No 50
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.79 E-value=1.1e-17 Score=176.22 Aligned_cols=218 Identities=20% Similarity=0.264 Sum_probs=163.0
Q ss_pred CCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhh
Q 007190 161 PEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 240 (613)
Q Consensus 161 ~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~ 240 (613)
..-.+.+|++++|.+.+++.+...+..-+. ...+|..++|+||||||||+|++++|++.++++...+++.+..
T Consensus 17 ~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~-------~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~ 89 (334)
T 1in4_A 17 QFLRPKSLDEFIGQENVKKKLSLALEAAKM-------RGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK 89 (334)
T ss_dssp CTTSCSSGGGCCSCHHHHHHHHHHHHHHHH-------HTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS
T ss_pred HHcCCccHHHccCcHHHHHHHHHHHHHHHh-------cCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC
Confidence 334456899999999988888776653211 1345668999999999999999999999999988887765432
Q ss_pred hhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhcccc----------------CCce
Q 007190 241 MFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQ----------------NEGI 304 (613)
Q Consensus 241 ~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~----------------~~~V 304 (613)
...+..++.. ...++|+||||+|.+.. ...+.|+..++.+.. -..+
T Consensus 90 ------~~~l~~~~~~--~~~~~v~~iDE~~~l~~----------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~ 151 (334)
T 1in4_A 90 ------QGDMAAILTS--LERGDVLFIDEIHRLNK----------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPF 151 (334)
T ss_dssp ------HHHHHHHHHH--CCTTCEEEEETGGGCCH----------HHHHHHHHHHHTSCCCC---------------CCC
T ss_pred ------HHHHHHHHHH--ccCCCEEEEcchhhcCH----------HHHHHHHHHHHhcccceeeccCcccccccccCCCe
Confidence 1123333322 23457999999999842 122233333332210 1246
Q ss_pred EEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHHHHHHHHH
Q 007190 305 ILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAI 383 (613)
Q Consensus 305 iVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~lv~~Aa~ 383 (613)
.++++|+++..|++.+++ ||...+.+++|+.+++.+|++...+..... ++..+..|++.+.| +++++.++++.+..
T Consensus 152 ~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~~~ 228 (334)
T 1in4_A 152 TLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRD 228 (334)
T ss_dssp EEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHHH
T ss_pred EEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHHH
Confidence 778899999999999998 999899999999999999999988765444 34447889998887 78999999999988
Q ss_pred HHHHhCCCccCHHHHHHHHHHHh
Q 007190 384 KAAVDGGEKLTATELEFAKDRIL 406 (613)
Q Consensus 384 ~A~~~~~~~It~~dl~~A~~~v~ 406 (613)
.|..++...||.++++++++...
T Consensus 229 ~a~~~~~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 229 MLTVVKADRINTDIVLKTMEVLN 251 (334)
T ss_dssp HHHHHTCSSBCHHHHHHHHHHHT
T ss_pred HHHHcCCCCcCHHHHHHHHHHhC
Confidence 88888888999999999998863
No 51
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.79 E-value=2.1e-18 Score=180.88 Aligned_cols=218 Identities=22% Similarity=0.236 Sum_probs=142.8
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcC-------CCe------
Q 007190 164 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG-------VPF------ 230 (613)
Q Consensus 164 ~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~-------~pf------ 230 (613)
+..+|++++|.+++++.+.... + .+ .+.++||+||||||||++|+++++.++ .||
T Consensus 19 ~~~~f~~i~G~~~~~~~l~~~~--~-~~---------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 86 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALLLTA--V-DP---------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVE 86 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHH--H-CG---------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGG
T ss_pred CCCCchhccChHHHHHHHHHHh--h-CC---------CCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccc
Confidence 4568999999999876643222 1 11 123699999999999999999999886 232
Q ss_pred --------------------eEeecchhhhhhhhhhHHHHHHHHHHH---------HcCCCeEEEEcCCCccccCCccCC
Q 007190 231 --------------------FYRAGSEFEEMFVGVGARRVRSLFQAA---------KKKAPCIIFIDEIDAVGSTRKQWE 281 (613)
Q Consensus 231 --------------------i~is~s~~~~~~~g~~~~~vr~lf~~A---------~~~~P~ILfIDEiD~l~~~r~~~~ 281 (613)
+.+..........|.. .+...+... ....+++|||||+|.+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~--~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~------- 157 (350)
T 1g8p_A 87 MIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGAL--DIERAISKGEKAFEPGLLARANRGYLYIDECNLLE------- 157 (350)
T ss_dssp GSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEE--CHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSC-------
T ss_pred cccchhhhhccccccCCCcccccCCCcchhhheeec--hhhhhhcCCceeecCceeeecCCCEEEEeChhhCC-------
Confidence 1111111011111110 011112111 01136799999999983
Q ss_pred cccHHHHHHHHHHhhcc----c-------cCCceEEEeecCCCC-CCChhhcCCCccceEEEccCC-CHhhHHHHHHHHh
Q 007190 282 GHTKKTLHQLLVEMDGF----E-------QNEGIILMAATNLPD-ILDPALTRPGRFDRHIVVPNP-DVRGRQEILELYL 348 (613)
Q Consensus 282 ~~~~~~l~~LL~~ldg~----~-------~~~~ViVIaaTN~p~-~Ld~aLlRpgRFd~~I~v~~P-d~~~R~~IL~~~l 348 (613)
...++.|+..++.- . ...++++|+|||..+ .++++|++ ||+.++.+++| +.+.+.+|++.++
T Consensus 158 ---~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~~~ 232 (350)
T 1g8p_A 158 ---DHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRRRD 232 (350)
T ss_dssp ---HHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHHH
Confidence 34555666655531 1 123689999999754 89999999 99999999999 6777778887632
Q ss_pred c-------------------------------cCCCCChhcHHHHHhcCCC---CCHHHHHHHHHHHHHHHHHhCCCccC
Q 007190 349 Q-------------------------------DKPLADDVDVKAIARGTPG---FNGADLANLVNIAAIKAAVDGGEKLT 394 (613)
Q Consensus 349 ~-------------------------------~~~l~~d~dl~~la~~t~G---~sgadL~~lv~~Aa~~A~~~~~~~It 394 (613)
. ...+ ++..+..|++...+ -+.+.+.++++.|...|..+++..|+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-s~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~ 311 (350)
T 1g8p_A 233 TYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEA-PNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVG 311 (350)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBC-CHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCC
T ss_pred hcccCchhhccccccchHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCC
Confidence 1 1122 23334444443322 36799999999999999888988999
Q ss_pred HHHHHHHHHHHhcC
Q 007190 395 ATELEFAKDRILMG 408 (613)
Q Consensus 395 ~~dl~~A~~~v~~g 408 (613)
.+|+.+|+..++..
T Consensus 312 ~~~v~~a~~~~l~~ 325 (350)
T 1g8p_A 312 RDHLKRVATMALSH 325 (350)
T ss_dssp HHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887654
No 52
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.78 E-value=1.5e-18 Score=181.74 Aligned_cols=215 Identities=20% Similarity=0.146 Sum_probs=152.3
Q ss_pred CCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhh--hhhhh
Q 007190 167 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE--EMFVG 244 (613)
Q Consensus 167 ~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~--~~~~g 244 (613)
.+++++|++++++.+...+.. +.++||+||||||||++|+++|+.++.+++.+++.... ..+.|
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g 90 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIG 90 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHE
T ss_pred hccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCC
Confidence 478899999998877665531 24799999999999999999999999999998874211 11111
Q ss_pred hhHHH-HHHHHHHHHcCC---CeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhcc---------ccCCceEEEeecC
Q 007190 245 VGARR-VRSLFQAAKKKA---PCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF---------EQNEGIILMAATN 311 (613)
Q Consensus 245 ~~~~~-vr~lf~~A~~~~---P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~---------~~~~~ViVIaaTN 311 (613)
..... ....|. .... .+||||||+|.+. ...++.|+..|+.. ..+.++++|+|+|
T Consensus 91 ~~~~~~~~~~~~--~~~g~l~~~vl~iDEi~~~~----------~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~n 158 (331)
T 2r44_A 91 TMIYNQHKGNFE--VKKGPVFSNFILADEVNRSP----------AKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQN 158 (331)
T ss_dssp EEEEETTTTEEE--EEECTTCSSEEEEETGGGSC----------HHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEEC
T ss_pred ceeecCCCCceE--eccCcccccEEEEEccccCC----------HHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecC
Confidence 10000 000000 0112 2799999999872 34556666666532 1244678888888
Q ss_pred CCC-----CCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCC----------------------C-ChhcHHHHH
Q 007190 312 LPD-----ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPL----------------------A-DDVDVKAIA 363 (613)
Q Consensus 312 ~p~-----~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l----------------------~-~d~dl~~la 363 (613)
..+ .+++++++ ||+.++.++.|+.+++.+|++.++..... . ++..+..++
T Consensus 159 p~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~ 236 (331)
T 2r44_A 159 PVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYII 236 (331)
T ss_dssp TTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHH
T ss_pred CCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 553 38999999 99999999999999999999998765321 1 121233333
Q ss_pred hc-------------------CCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcCC
Q 007190 364 RG-------------------TPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRILMGT 409 (613)
Q Consensus 364 ~~-------------------t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A~~~v~~g~ 409 (613)
.. ..|.|++.+.++++.|...|..++++.|+.+|+.+++..++...
T Consensus 237 ~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~r 301 (331)
T 2r44_A 237 ELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNHR 301 (331)
T ss_dssp HHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHhh
Confidence 21 12569999999999999999999999999999999999887653
No 53
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.78 E-value=1.9e-18 Score=181.23 Aligned_cols=213 Identities=20% Similarity=0.195 Sum_probs=153.1
Q ss_pred ccccCCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcC------CCe
Q 007190 157 KEVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG------VPF 230 (613)
Q Consensus 157 ~~~~~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~------~pf 230 (613)
.++.....+.+|++++|++++++.+...+. . .+.| ++||+||||||||++|++++++++ ..+
T Consensus 25 ~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~---~--------~~~~-~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~ 92 (353)
T 1sxj_D 25 QPWVEKYRPKNLDEVTAQDHAVTVLKKTLK---S--------ANLP-HMLFYGPPGTGKTSTILALTKELYGPDLMKSRI 92 (353)
T ss_dssp -CHHHHTCCSSTTTCCSCCTTHHHHHHHTT---C--------TTCC-CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSE
T ss_pred ccHHHhcCCCCHHHhhCCHHHHHHHHHHHh---c--------CCCC-EEEEECCCCCCHHHHHHHHHHHhCCCcccccce
Confidence 356666778899999999999888776653 1 2233 499999999999999999999854 467
Q ss_pred eEeecchhhhhhhhhhHHHHHHHHHHHH----------------cCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHH
Q 007190 231 FYRAGSEFEEMFVGVGARRVRSLFQAAK----------------KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVE 294 (613)
Q Consensus 231 i~is~s~~~~~~~g~~~~~vr~lf~~A~----------------~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ 294 (613)
+.+++++.... ..+++.+.... ...+.||||||+|.+. ....+.|+..
T Consensus 93 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~----------~~~~~~Ll~~ 156 (353)
T 1sxj_D 93 LELNASDERGI------SIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT----------ADAQSALRRT 156 (353)
T ss_dssp EEECSSSCCCH------HHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSC----------HHHHHHHHHH
T ss_pred EEEccccccch------HHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccC----------HHHHHHHHHH
Confidence 88887764211 11111111111 1245699999999983 2345667777
Q ss_pred hhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHH
Q 007190 295 MDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGAD 373 (613)
Q Consensus 295 ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgad 373 (613)
|+... ....+|.+||.+..+++++++ ||. .+.+++|+.++...+++..+...... ++..+..+++.+.| +.+.
T Consensus 157 le~~~--~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~ 230 (353)
T 1sxj_D 157 METYS--GVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG-DLRR 230 (353)
T ss_dssp HHHTT--TTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS-CHHH
T ss_pred HHhcC--CCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHH
Confidence 77543 345666788999999999998 885 88999999999999999988665432 44557888888876 6777
Q ss_pred HHHHHHHHHHHHHHhCCC-ccCHHHHHHHHH
Q 007190 374 LANLVNIAAIKAAVDGGE-KLTATELEFAKD 403 (613)
Q Consensus 374 L~~lv~~Aa~~A~~~~~~-~It~~dl~~A~~ 403 (613)
+.++++.++..+.+.+.. .||.+++..++.
T Consensus 231 ~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 231 GITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 888888777766554433 799999987654
No 54
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.78 E-value=5.7e-18 Score=179.66 Aligned_cols=212 Identities=23% Similarity=0.291 Sum_probs=155.3
Q ss_pred CcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc-----------CCCeeEeecc
Q 007190 168 FKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-----------GVPFFYRAGS 236 (613)
Q Consensus 168 f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~-----------~~pfi~is~s 236 (613)
.++++|.++.++.+.+.+..... ...|++++|+||||||||++|+++++++ +.++++++|.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK--------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT--------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 48899999999999887754322 2456799999999999999999999987 8999999987
Q ss_pred hhh-hhh------h-----------hhh-HHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHH-HHHHHHHhh
Q 007190 237 EFE-EMF------V-----------GVG-ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKT-LHQLLVEMD 296 (613)
Q Consensus 237 ~~~-~~~------~-----------g~~-~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~-l~~LL~~ld 296 (613)
... ..+ . +.. ...+..++..+.... ++|||||+|.+.... .... +..|+...
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~~------~~~~~l~~l~~~~- 162 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKRR------GGDIVLYQLLRSD- 162 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHST------TSHHHHHHHHTSS-
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccCC------CCceeHHHHhcCC-
Confidence 643 110 1 111 223444555454444 499999999995431 1234 55555332
Q ss_pred ccccCCceEEEeecCCC---CCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhcc----CCCCChhcHHHHHhcCC--
Q 007190 297 GFEQNEGIILMAATNLP---DILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQD----KPLADDVDVKAIARGTP-- 367 (613)
Q Consensus 297 g~~~~~~ViVIaaTN~p---~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~----~~l~~d~dl~~la~~t~-- 367 (613)
.++.+|++||.+ +.+++++.+ ||...+.+++|+.++..+|++.++.. ..+ ++..+..+++.+.
T Consensus 163 -----~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~-~~~~~~~i~~~~~~~ 234 (384)
T 2qby_B 163 -----ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTY-DDEILSYIAAISAKE 234 (384)
T ss_dssp -----SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSC-CSHHHHHHHHHHHTT
T ss_pred -----cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCc-CHHHHHHHHHHHHhc
Confidence 678899999987 678999988 88889999999999999999998863 222 3334666776665
Q ss_pred -CCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHh
Q 007190 368 -GFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRIL 406 (613)
Q Consensus 368 -G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A~~~v~ 406 (613)
| +.+.+.++++.|...|. +...|+.+++..++++..
T Consensus 235 ~G-~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 235 HG-DARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp CC-CHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred cC-CHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 4 56778888988887765 567899999999988764
No 55
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.76 E-value=4e-18 Score=175.85 Aligned_cols=210 Identities=21% Similarity=0.216 Sum_probs=149.3
Q ss_pred cccCCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc-----CCCeeE
Q 007190 158 EVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFY 232 (613)
Q Consensus 158 ~~~~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~-----~~pfi~ 232 (613)
++.....+.+|++++|++++++.+.+.+. . .+.| ++||+||||||||++|+++++++ +.+++.
T Consensus 6 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~---~--------~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 73 (319)
T 2chq_A 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVE---R--------KNIP-HLLFSGPPGTGKTATAIALARDLFGENWRDNFIE 73 (319)
T ss_dssp CTTTTTSCSSGGGSCSCHHHHHHHHTTTT---T--------TCCC-CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEE
T ss_pred cHHHhcCCCCHHHHhCCHHHHHHHHHHHh---C--------CCCC-eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEE
Confidence 45566677899999999999888776553 1 2344 39999999999999999999986 346788
Q ss_pred eecchhhhhhhhhhHHHHHHHHHHH-H-cCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeec
Q 007190 233 RAGSEFEEMFVGVGARRVRSLFQAA-K-KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAAT 310 (613)
Q Consensus 233 is~s~~~~~~~g~~~~~vr~lf~~A-~-~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaT 310 (613)
+++++.... ......+..+.... . ...+.+|+|||+|.+. ....+.|+..++. ...++++|++|
T Consensus 74 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~----------~~~~~~L~~~le~--~~~~~~~i~~~ 139 (319)
T 2chq_A 74 MNASDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALT----------ADAQAALRRTMEM--YSKSCRFILSC 139 (319)
T ss_dssp EETTSTTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSC----------HHHHHTTGGGTSS--SSSSEEEEEEE
T ss_pred EeCccccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCC----------HHHHHHHHHHHHh--cCCCCeEEEEe
Confidence 888764321 11111222221110 0 2447899999999983 2455667777764 34567888899
Q ss_pred CCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC
Q 007190 311 NLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDG 389 (613)
Q Consensus 311 N~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~ 389 (613)
|.+..+++++.+ ||. .+.+++|+.+++..+++.+++..+.. ++..+..++..+.| +.+.+.++++.++. .
T Consensus 140 ~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~~-----~ 210 (319)
T 2chq_A 140 NYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAA-----I 210 (319)
T ss_dssp SCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHHHH-----S
T ss_pred CChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH-----c
Confidence 999999999998 885 89999999999999999998766543 44457788877765 56666666665442 1
Q ss_pred CCccCHHHHHHHH
Q 007190 390 GEKLTATELEFAK 402 (613)
Q Consensus 390 ~~~It~~dl~~A~ 402 (613)
...||.+++..++
T Consensus 211 ~~~i~~~~v~~~~ 223 (319)
T 2chq_A 211 GEVVDADTIYQIT 223 (319)
T ss_dssp SSCBCHHHHHHHT
T ss_pred CCCCCHHHHHHHH
Confidence 3579988887653
No 56
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.76 E-value=9.8e-19 Score=165.48 Aligned_cols=160 Identities=23% Similarity=0.363 Sum_probs=118.5
Q ss_pred CCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc----------CCCeeE
Q 007190 163 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFY 232 (613)
Q Consensus 163 ~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~----------~~pfi~ 232 (613)
....+|++++|.++..+.+.+.+. . ..+.+++|+||||||||++|+++++++ +.++++
T Consensus 16 ~~~~~~~~~~g~~~~~~~l~~~l~---~---------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~ 83 (195)
T 1jbk_A 16 AEQGKLDPVIGRDEEIRRTIQVLQ---R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 83 (195)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHT---S---------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred HhhccccccccchHHHHHHHHHHh---c---------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEE
Confidence 345689999999998777665542 2 345689999999999999999999986 788999
Q ss_pred eecchhh--hhhhhhhHHHHHHHHHHHH-cCCCeEEEEcCCCccccCCccC-CcccHHHHHHHHHHhhccccCCceEEEe
Q 007190 233 RAGSEFE--EMFVGVGARRVRSLFQAAK-KKAPCIIFIDEIDAVGSTRKQW-EGHTKKTLHQLLVEMDGFEQNEGIILMA 308 (613)
Q Consensus 233 is~s~~~--~~~~g~~~~~vr~lf~~A~-~~~P~ILfIDEiD~l~~~r~~~-~~~~~~~l~~LL~~ldg~~~~~~ViVIa 308 (613)
+++..+. ..+.+.....++.++..+. ...|+||||||+|.+...+... .......+..++ + ..++.+|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~---~----~~~~~~i~ 156 (195)
T 1jbk_A 84 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL---A----RGELHCVG 156 (195)
T ss_dssp ECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHH---H----TTSCCEEE
T ss_pred eeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhh---c----cCCeEEEE
Confidence 9988775 3445666677888887664 4568899999999996543221 122233443333 2 34678888
Q ss_pred ecCCCC-----CCChhhcCCCccceEEEccCCCHhhHHHHH
Q 007190 309 ATNLPD-----ILDPALTRPGRFDRHIVVPNPDVRGRQEIL 344 (613)
Q Consensus 309 aTN~p~-----~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL 344 (613)
+||.+. .+++++.+ ||+ .+.+++|+.+++.+||
T Consensus 157 ~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 157 ATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred eCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 888876 78999999 997 6999999999998876
No 57
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.76 E-value=2.9e-18 Score=188.77 Aligned_cols=208 Identities=22% Similarity=0.291 Sum_probs=142.9
Q ss_pred CCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc----------CCCee
Q 007190 162 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFF 231 (613)
Q Consensus 162 ~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~----------~~pfi 231 (613)
.....+|++|+|.++.++.+.+++. ...+.++||+||||||||++|+++|... +.+|+
T Consensus 173 ~~r~~~ld~iiGr~~~i~~l~~~l~------------r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (468)
T 3pxg_A 173 IAKEDSLDPVIGRSKEIQRVIEVLS------------RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (468)
T ss_dssp HTTSSCSCCCCCCHHHHHHHHHHHH------------CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HHhcCCCCCccCcHHHHHHHHHHHh------------ccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEE
Confidence 3445689999999999888777664 1234589999999999999999999986 78899
Q ss_pred EeecchhhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecC
Q 007190 232 YRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATN 311 (613)
Q Consensus 232 ~is~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN 311 (613)
.++++ ..|.|....+++.+|..+....|+||||| +. ....+.|+..|+ +..+.+|++||
T Consensus 241 ~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~~---------~~a~~~L~~~L~----~g~v~vI~at~ 299 (468)
T 3pxg_A 241 TLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA---------IDASNILKPSLA----RGELQCIGATT 299 (468)
T ss_dssp CC-------------CTTHHHHHHHHHTCCCCEEEEC-----C-----------------CCCTT----SSSCEEEEECC
T ss_pred EeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----Cc---------hhHHHHHHHhhc----CCCEEEEecCC
Confidence 99887 66778888889999999998889999999 11 123334444443 45789999999
Q ss_pred CCC-----CCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccC----CCC-ChhcHHHHHhcCC-----CCCHHHHHH
Q 007190 312 LPD-----ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK----PLA-DDVDVKAIARGTP-----GFNGADLAN 376 (613)
Q Consensus 312 ~p~-----~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~----~l~-~d~dl~~la~~t~-----G~sgadL~~ 376 (613)
.++ .+|+++.| ||. .|.|+.|+.+++..||+.++... ... ++..+..++..+. .+.+.....
T Consensus 300 ~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ 376 (468)
T 3pxg_A 300 LDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAID 376 (468)
T ss_dssp TTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHH
T ss_pred HHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHH
Confidence 987 68999999 997 59999999999999999887652 222 3334555554433 344567778
Q ss_pred HHHHHHHHHHHhCC-CccCHHHHHHHHHHH
Q 007190 377 LVNIAAIKAAVDGG-EKLTATELEFAKDRI 405 (613)
Q Consensus 377 lv~~Aa~~A~~~~~-~~It~~dl~~A~~~v 405 (613)
++++|+..+..+.. ..-....++..+.++
T Consensus 377 ll~~a~~~~~~~~~~~p~~i~~l~~~i~~l 406 (468)
T 3pxg_A 377 LIDEAGSKVRLRSFTTPPNLKELEQKLDEV 406 (468)
T ss_dssp HHHHHHHHHHHHTTSCCSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 88888766655543 233455555555443
No 58
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.76 E-value=6.7e-18 Score=196.15 Aligned_cols=224 Identities=17% Similarity=0.254 Sum_probs=163.5
Q ss_pred CCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc----------CCCeeE
Q 007190 163 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFY 232 (613)
Q Consensus 163 ~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~----------~~pfi~ 232 (613)
....+|++++|.++..+.+.+++. ...+.++||+||||||||++|+++|+.+ +.+++.
T Consensus 180 ~~~~~~d~~iGr~~~i~~l~~~l~------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~ 247 (758)
T 1r6b_X 180 ARVGGIDPLIGREKELERAIQVLC------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS 247 (758)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHT------------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred HhcCCCCCccCCHHHHHHHHHHHh------------ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEE
Confidence 344589999999998777666542 2245689999999999999999999986 566778
Q ss_pred eecchhh--hhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeec
Q 007190 233 RAGSEFE--EMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAAT 310 (613)
Q Consensus 233 is~s~~~--~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaT 310 (613)
++.+.+. ..+.|....+++.+|..+....++||||||+|.+.+.++... ......+.| ..+-.+..+.+|++|
T Consensus 248 ~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~-~~~~~~~~L----~~~l~~~~~~~I~at 322 (758)
T 1r6b_X 248 LDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASG-GQVDAANLI----KPLLSSGKIRVIGST 322 (758)
T ss_dssp CCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSS-CHHHHHHHH----SSCSSSCCCEEEEEE
T ss_pred EcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCc-chHHHHHHH----HHHHhCCCeEEEEEe
Confidence 7777765 357788888999999999888889999999999976543321 122222222 233345678999999
Q ss_pred CCCC-----CCChhhcCCCccceEEEccCCCHhhHHHHHHHHhcc----CCC-CChhcHHHHHhcC-----CCCCHHHHH
Q 007190 311 NLPD-----ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQD----KPL-ADDVDVKAIARGT-----PGFNGADLA 375 (613)
Q Consensus 311 N~p~-----~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~----~~l-~~d~dl~~la~~t-----~G~sgadL~ 375 (613)
|.++ .+|++|.| ||+ .+.++.|+.+++.+||+.++.. ... ..+..+..++..+ ..+.+..+.
T Consensus 323 ~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i 399 (758)
T 1r6b_X 323 TYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAI 399 (758)
T ss_dssp CHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHH
T ss_pred CchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHH
Confidence 9653 57899998 997 7999999999999999987653 111 1233455555443 335677888
Q ss_pred HHHHHHHHHHHH----hCCCccCHHHHHHHHHHHh
Q 007190 376 NLVNIAAIKAAV----DGGEKLTATELEFAKDRIL 406 (613)
Q Consensus 376 ~lv~~Aa~~A~~----~~~~~It~~dl~~A~~~v~ 406 (613)
.++++|+..+.. .....|+.+|+..++.+..
T Consensus 400 ~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 400 DVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp HHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcccccccCCccCHHHHHHHHHHhc
Confidence 999988766555 2456799999999998864
No 59
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.75 E-value=3.2e-17 Score=172.97 Aligned_cols=223 Identities=21% Similarity=0.267 Sum_probs=160.0
Q ss_pred CCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc------CCCeeEeecchhh
Q 007190 166 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA------GVPFFYRAGSEFE 239 (613)
Q Consensus 166 ~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~------~~pfi~is~s~~~ 239 (613)
..+++++|.++..+.|.+.+.... ....+..++|+||||||||++++++++++ +.++++++|....
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~--------~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~ 88 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLY--------REEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID 88 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGG--------GTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHC
T ss_pred cCCCCCCChHHHHHHHHHHHHHHH--------cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCC
Confidence 456889999998877776553211 12456689999999999999999999988 8899999986532
Q ss_pred hh------h----------hhh-hHHHHHHHHHHHHcC-CCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccC
Q 007190 240 EM------F----------VGV-GARRVRSLFQAAKKK-APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQN 301 (613)
Q Consensus 240 ~~------~----------~g~-~~~~vr~lf~~A~~~-~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~ 301 (613)
.. . .+. .......++...... .|++|+|||+|.+.... ....+..++..++.. ..
T Consensus 89 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~------~~~~l~~l~~~~~~~-~~ 161 (386)
T 2qby_A 89 TPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKY------NDDILYKLSRINSEV-NK 161 (386)
T ss_dssp SHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSS------CSTHHHHHHHHHHSC-CC
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccC------cCHHHHHHhhchhhc-CC
Confidence 11 0 011 122244455554443 38999999999995432 134667777777654 34
Q ss_pred CceEEEeecCCC---CCCChhhcCCCccc-eEEEccCCCHhhHHHHHHHHhccC---CCCChhcHHHHHhcCC---CCCH
Q 007190 302 EGIILMAATNLP---DILDPALTRPGRFD-RHIVVPNPDVRGRQEILELYLQDK---PLADDVDVKAIARGTP---GFNG 371 (613)
Q Consensus 302 ~~ViVIaaTN~p---~~Ld~aLlRpgRFd-~~I~v~~Pd~~~R~~IL~~~l~~~---~l~~d~dl~~la~~t~---G~sg 371 (613)
.++.+|++||.+ ..+++.+.+ ||. +.+.+++|+.++..++++.++... ....+..+..+++.+. | ++
T Consensus 162 ~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G-~~ 238 (386)
T 2qby_A 162 SKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHG-DA 238 (386)
T ss_dssp --EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTC-CH
T ss_pred CeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcC-CH
Confidence 578888888877 467888877 675 589999999999999999887531 1223334566666665 5 67
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHh
Q 007190 372 ADLANLVNIAAIKAAVDGGEKLTATELEFAKDRIL 406 (613)
Q Consensus 372 adL~~lv~~Aa~~A~~~~~~~It~~dl~~A~~~v~ 406 (613)
+.+.++++.+...|..++...|+.+++..|+....
T Consensus 239 r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 239 RRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence 78888999999888888888999999999988764
No 60
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.74 E-value=2.5e-17 Score=170.18 Aligned_cols=207 Identities=15% Similarity=0.167 Sum_probs=150.5
Q ss_pred cccCCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc-----CCCeeE
Q 007190 158 EVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFY 232 (613)
Q Consensus 158 ~~~~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~-----~~pfi~ 232 (613)
++.+...+.+|++++|.+++++.|.+.+. ..+.|. +||+||||||||++|+++++++ +.++++
T Consensus 10 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~-----------~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 77 (323)
T 1sxj_B 10 PWVEKYRPQVLSDIVGNKETIDRLQQIAK-----------DGNMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLE 77 (323)
T ss_dssp CHHHHTCCSSGGGCCSCTHHHHHHHHHHH-----------SCCCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEE
T ss_pred cHHHhcCCCCHHHHHCCHHHHHHHHHHHH-----------cCCCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEE
Confidence 34455667789999999999998888764 234554 9999999999999999999986 345778
Q ss_pred eecchhhhhhhhhhHHHHHHHHHHHH-------cCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceE
Q 007190 233 RAGSEFEEMFVGVGARRVRSLFQAAK-------KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGII 305 (613)
Q Consensus 233 is~s~~~~~~~g~~~~~vr~lf~~A~-------~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~Vi 305 (613)
+++++... ...+++++.... ...+++|+|||+|.+. ....+.|+..++. ...+++
T Consensus 78 ~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~----------~~~~~~L~~~le~--~~~~~~ 139 (323)
T 1sxj_B 78 LNASDDRG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMT----------AGAQQALRRTMEL--YSNSTR 139 (323)
T ss_dssp ECTTSCCS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSC----------HHHHHTTHHHHHH--TTTTEE
T ss_pred ecCccccC------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCC----------HHHHHHHHHHHhc--cCCCce
Confidence 87765321 233455554443 2347899999999983 2345666666664 335577
Q ss_pred EEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 007190 306 LMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIK 384 (613)
Q Consensus 306 VIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~lv~~Aa~~ 384 (613)
+|.+||.+..+++++.+ |+. .+.+++|+.++..++++.+++..+.. ++..+..+++.+.| +.+.+.++++.+...
T Consensus 140 ~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l~~~~~~ 215 (323)
T 1sxj_B 140 FAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQSTVAG 215 (323)
T ss_dssp EEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred EEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhc
Confidence 78888999999999998 774 89999999999999999988654433 34457778887765 666666776655422
Q ss_pred HHHhCCCccCHHHHHHHHH
Q 007190 385 AAVDGGEKLTATELEFAKD 403 (613)
Q Consensus 385 A~~~~~~~It~~dl~~A~~ 403 (613)
...|+.+++..++.
T Consensus 216 -----~~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 216 -----HGLVNADNVFKIVD 229 (323)
T ss_dssp -----HSSBCHHHHHHHHT
T ss_pred -----CCCcCHHHHHHHHC
Confidence 14689988877653
No 61
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.74 E-value=9.2e-17 Score=170.27 Aligned_cols=219 Identities=16% Similarity=0.158 Sum_probs=161.2
Q ss_pred CCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCc--eEEEEccCCChHHHHHHHHHHhc----CCCeeEeecchhhh
Q 007190 167 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPK--GILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGSEFEE 240 (613)
Q Consensus 167 ~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~--gvLL~GPpGTGKT~LAralA~e~----~~pfi~is~s~~~~ 240 (613)
.+++++|.++..+.+.+.+..... ...|. .++|+||||||||++++++++.+ +.++++++|+....
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~ 86 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLR--------NPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN 86 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHH--------STTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCS
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc--------CCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCC
Confidence 458899999998888887754211 12333 89999999999999999999988 67889999765421
Q ss_pred h---h---h----------hhhH-HHHHHHHHHHH-cCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhcccc--
Q 007190 241 M---F---V----------GVGA-RRVRSLFQAAK-KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQ-- 300 (613)
Q Consensus 241 ~---~---~----------g~~~-~~vr~lf~~A~-~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~-- 300 (613)
. + . +... .....+..... ...|.+|||||+|.+ ....++.|+..++....
T Consensus 87 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l----------~~~~~~~L~~~~~~~~~~~ 156 (389)
T 1fnn_A 87 FTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL----------APDILSTFIRLGQEADKLG 156 (389)
T ss_dssp HHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS----------CHHHHHHHHHHTTCHHHHS
T ss_pred HHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc----------chHHHHHHHHHHHhCCCCC
Confidence 1 0 0 1111 11222222222 345899999999998 24567777777765432
Q ss_pred CCceEEEeecCCC---CCCChhhcCCCccce-EEEccCCCHhhHHHHHHHHhcc---CCCCChhcHHHHHhcC-------
Q 007190 301 NEGIILMAATNLP---DILDPALTRPGRFDR-HIVVPNPDVRGRQEILELYLQD---KPLADDVDVKAIARGT------- 366 (613)
Q Consensus 301 ~~~ViVIaaTN~p---~~Ld~aLlRpgRFd~-~I~v~~Pd~~~R~~IL~~~l~~---~~l~~d~dl~~la~~t------- 366 (613)
..++.+|++||.+ +.+++.+.+ ||.. .+.+++++.++..++++..+.. ....++..+..+++.+
T Consensus 157 ~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 234 (389)
T 1fnn_A 157 AFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLD 234 (389)
T ss_dssp SCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTC
T ss_pred cCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCC
Confidence 2578888899987 678888877 8875 8999999999999999998864 2223455577788877
Q ss_pred --CCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHh
Q 007190 367 --PGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRIL 406 (613)
Q Consensus 367 --~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A~~~v~ 406 (613)
.| +++.+.++++.|...|..++...|+.+++..++....
T Consensus 235 ~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 275 (389)
T 1fnn_A 235 TNRG-DARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL 275 (389)
T ss_dssp TTSC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS
T ss_pred CCCC-cHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh
Confidence 44 6788999999999998888888999999999988764
No 62
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.74 E-value=3.9e-17 Score=172.55 Aligned_cols=206 Identities=20% Similarity=0.299 Sum_probs=152.5
Q ss_pred cCCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCC----------
Q 007190 160 MPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP---------- 229 (613)
Q Consensus 160 ~~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~p---------- 229 (613)
.+...+.+|++++|.+++++.|.+.+.. .+.|..+||+||||||||++|+++++.++..
T Consensus 7 ~~k~rp~~~~~~vg~~~~~~~L~~~l~~-----------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~ 75 (373)
T 1jr3_A 7 ARKWRPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV 75 (373)
T ss_dssp HHHTCCCSTTTSCSCHHHHHHHHHHHHH-----------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSS
T ss_pred HHhhCCCchhhccCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcc
Confidence 3445567899999999999988887742 3456689999999999999999999987642
Q ss_pred --------------eeEeecchhhhhhhhhhHHHHHHHHHHHHc----CCCeEEEEcCCCccccCCccCCcccHHHHHHH
Q 007190 230 --------------FFYRAGSEFEEMFVGVGARRVRSLFQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQL 291 (613)
Q Consensus 230 --------------fi~is~s~~~~~~~g~~~~~vr~lf~~A~~----~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~L 291 (613)
++.++++. ..+...++.++..+.. ..+.||+|||+|.+. ...++.|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~----------~~~~~~L 139 (373)
T 1jr3_A 76 CDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS----------RHSFNAL 139 (373)
T ss_dssp SHHHHHHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC----------HHHHHHH
T ss_pred cHHHHHHhccCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCeEEEEEECcchhc----------HHHHHHH
Confidence 12222111 0112345666666542 346899999999982 3566778
Q ss_pred HHHhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCC
Q 007190 292 LVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFN 370 (613)
Q Consensus 292 L~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~s 370 (613)
+..++. ...++++|.+|+.+..+++.+.+ |+ ..+.+++|+.++..++++.+++..+.. ++..+..+++.+.| +
T Consensus 140 l~~le~--~~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~ 213 (373)
T 1jr3_A 140 LKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-S 213 (373)
T ss_dssp HHHHHS--CCSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-C
T ss_pred HHHHhc--CCCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-C
Confidence 888874 34567888888888899999988 77 789999999999999999988765443 34447788888876 7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 007190 371 GADLANLVNIAAIKAAVDGGEKLTATELEFAK 402 (613)
Q Consensus 371 gadL~~lv~~Aa~~A~~~~~~~It~~dl~~A~ 402 (613)
++++.++++.+... +...||.+++..++
T Consensus 214 ~r~~~~~l~~~~~~----~~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 214 LRDALSLTDQAIAS----GDGQVSTQAVSAML 241 (373)
T ss_dssp HHHHHHHHHHHHHH----TTTCBCHHHHHHHT
T ss_pred HHHHHHHHHHHHHh----cCCcccHHHHHHHh
Confidence 88898988877543 24679999887654
No 63
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.74 E-value=9.6e-18 Score=173.16 Aligned_cols=202 Identities=19% Similarity=0.260 Sum_probs=139.6
Q ss_pred cccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhh----
Q 007190 169 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM---- 241 (613)
Q Consensus 169 ~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~---- 241 (613)
++++|++++++.+...+...+..-. ...+++.++||+||||||||++|+++|+.+ +.|++.++|+.+...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~---~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLK---DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCS---CTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCC---CCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 4678999999999888765321100 012334579999999999999999999987 567999999876432
Q ss_pred -hhhhh-----HHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhcccc---------CCceEE
Q 007190 242 -FVGVG-----ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQ---------NEGIIL 306 (613)
Q Consensus 242 -~~g~~-----~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~---------~~~ViV 306 (613)
+.|.. ......+........+++|||||+|.+ ....++.|+..|+...- -.++++
T Consensus 94 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l----------~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~ii 163 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKA----------HPDVFNILLQMLDDGRLTDSHGRTVDFRNTVI 163 (311)
T ss_dssp HHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGS----------CHHHHHHHHHHHHHSEEECTTSCEEECTTEEE
T ss_pred HhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhc----------CHHHHHHHHHHHhcCEEEcCCCCEEECCCcEE
Confidence 11110 000012233334445689999999998 23566777777764321 136779
Q ss_pred EeecCC--------------------------CCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccC-------CC
Q 007190 307 MAATNL--------------------------PDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK-------PL 353 (613)
Q Consensus 307 IaaTN~--------------------------p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~-------~l 353 (613)
|+|||. ...+++++.+ ||+..+.+++|+.+++..|++.++++. ..
T Consensus 164 I~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~ 241 (311)
T 4fcw_A 164 IMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRI 241 (311)
T ss_dssp EEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTC
T ss_pred EEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 999998 4468888987 999999999999999999999987542 11
Q ss_pred ---CChhcHHHHHhcCC--CCCHHHHHHHHHHHHHHH
Q 007190 354 ---ADDVDVKAIARGTP--GFNGADLANLVNIAAIKA 385 (613)
Q Consensus 354 ---~~d~dl~~la~~t~--G~sgadL~~lv~~Aa~~A 385 (613)
-++..+..|+.... ..+.++|.++++++...+
T Consensus 242 ~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~ 278 (311)
T 4fcw_A 242 SLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETP 278 (311)
T ss_dssp EEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHH
T ss_pred EEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHH
Confidence 13334666766544 457888999888776544
No 64
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.74 E-value=2.6e-17 Score=175.56 Aligned_cols=230 Identities=22% Similarity=0.242 Sum_probs=145.3
Q ss_pred ccCCCHHHHHHHHHHHHH-hcCchhh-----------------hhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCee
Q 007190 170 DVKGCDDAKQELVEVVEY-LKNPSKF-----------------TRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFF 231 (613)
Q Consensus 170 dV~G~~e~k~~L~eiv~~-l~~p~~~-----------------~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi 231 (613)
+|+|++++|+.|...+.. ++..... .......+.++||+||||||||++|+++|+.++.||+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 489999999999987732 1111100 0012345678999999999999999999999999999
Q ss_pred Eeecchhh-hhhhhhh-HHHHHHHHHHHH----cCCCeEEEEcCCCccccCCccCC----cccHHHHHHHHHHhhccc--
Q 007190 232 YRAGSEFE-EMFVGVG-ARRVRSLFQAAK----KKAPCIIFIDEIDAVGSTRKQWE----GHTKKTLHQLLVEMDGFE-- 299 (613)
Q Consensus 232 ~is~s~~~-~~~~g~~-~~~vr~lf~~A~----~~~P~ILfIDEiD~l~~~r~~~~----~~~~~~l~~LL~~ldg~~-- 299 (613)
.++++.+. ..|.|.. ...+..++..+. ...++||||||+|.+...+.... ......++.|+..|++..
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99998875 3455543 344555655432 23568999999999976543211 112347788888888531
Q ss_pred -----------------cCCceEEEeecCCC-----------------------------------------CCCChhhc
Q 007190 300 -----------------QNEGIILMAATNLP-----------------------------------------DILDPALT 321 (613)
Q Consensus 300 -----------------~~~~ViVIaaTN~p-----------------------------------------~~Ld~aLl 321 (613)
...++++|++||.. ..+.|.+.
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~ 261 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 261 (376)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHh
Confidence 12456788887721 12456677
Q ss_pred CCCccceEEEccCCCHhhHHHHHHH----Hhc-------cC--CC-CChhcHHHHHhcCC--CCCHHHHHHHHHHHHHHH
Q 007190 322 RPGRFDRHIVVPNPDVRGRQEILEL----YLQ-------DK--PL-ADDVDVKAIARGTP--GFNGADLANLVNIAAIKA 385 (613)
Q Consensus 322 RpgRFd~~I~v~~Pd~~~R~~IL~~----~l~-------~~--~l-~~d~dl~~la~~t~--G~sgadL~~lv~~Aa~~A 385 (613)
+ ||+..+.|++++.++...|+.. +++ .. .+ .++..+..|++... ....+.|.++++.+...+
T Consensus 262 ~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~ 339 (376)
T 1um8_A 262 G--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDI 339 (376)
T ss_dssp T--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHH
T ss_pred c--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHHH
Confidence 6 8999999999999999998862 211 11 11 12334566666532 246789999998888766
Q ss_pred HHhCC------CccCHHHHHHH
Q 007190 386 AVDGG------EKLTATELEFA 401 (613)
Q Consensus 386 ~~~~~------~~It~~dl~~A 401 (613)
..+.. ..||.++++.+
T Consensus 340 ~~~~~~~~~~~~~i~~~~v~~~ 361 (376)
T 1um8_A 340 MFDLPKLKGSEVRITKDCVLKQ 361 (376)
T ss_dssp HHTGGGGTTSEEEECHHHHTTS
T ss_pred HhhccCCCCCEEEEeHHHhcCC
Confidence 55422 14788777643
No 65
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.2e-17 Score=174.73 Aligned_cols=159 Identities=13% Similarity=0.115 Sum_probs=115.4
Q ss_pred cCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc----------CCCeeEeecchhhh
Q 007190 171 VKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFYRAGSEFEE 240 (613)
Q Consensus 171 V~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~----------~~pfi~is~s~~~~ 240 (613)
+.|.++..+.+...+.. .+....|.+++|+||||||||++++++++++ ...+++++|..+.+
T Consensus 22 L~~Re~E~~~i~~~L~~--------~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t 93 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYD--------SLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93 (318)
T ss_dssp HHHHHHHHHHHHHHHHH--------HHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred cCCHHHHHHHHHHHHHH--------HhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence 55666655555544432 1223467799999999999999999999988 35688999876432
Q ss_pred h----------hh------hhhHHHHHHHHHHH--HcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCC
Q 007190 241 M----------FV------GVGARRVRSLFQAA--KKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNE 302 (613)
Q Consensus 241 ~----------~~------g~~~~~vr~lf~~A--~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~ 302 (613)
. +. +.....++.+|... ....++||||||+|.+. .+..+..|+.... ..+.
T Consensus 94 ~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~---------~q~~L~~l~~~~~--~~~s 162 (318)
T 3te6_A 94 MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL---------SEKILQYFEKWIS--SKNS 162 (318)
T ss_dssp -HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC---------CTHHHHHHHHHHH--CSSC
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh---------cchHHHHHHhccc--ccCC
Confidence 2 11 22345678888875 35668999999999995 2467777776543 3456
Q ss_pred ceEEEeecCCCCCC----ChhhcCCCccc-eEEEccCCCHhhHHHHHHHHhcc
Q 007190 303 GIILMAATNLPDIL----DPALTRPGRFD-RHIVVPNPDVRGRQEILELYLQD 350 (613)
Q Consensus 303 ~ViVIaaTN~p~~L----d~aLlRpgRFd-~~I~v~~Pd~~~R~~IL~~~l~~ 350 (613)
++++|+++|..+.. ++++++ ||. ..|.|++++.++..+|++..++.
T Consensus 163 ~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 163 KLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp CEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred cEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 78999999987653 445555 887 68999999999999999999865
No 66
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.73 E-value=5.8e-17 Score=167.74 Aligned_cols=210 Identities=20% Similarity=0.257 Sum_probs=148.7
Q ss_pred cccCCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcC-----CCeeE
Q 007190 158 EVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG-----VPFFY 232 (613)
Q Consensus 158 ~~~~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~-----~pfi~ 232 (613)
++.....+.+|++++|++++++.|...+.. .+.| ++||+||||||||++|+++++.+. .+++.
T Consensus 14 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~-~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~ 81 (327)
T 1iqp_A 14 PWVEKYRPQRLDDIVGQEHIVKRLKHYVKT-----------GSMP-HLLFAGPPGVGKTTAALALARELFGENWRHNFLE 81 (327)
T ss_dssp CHHHHTCCCSTTTCCSCHHHHHHHHHHHHH-----------TCCC-EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEE
T ss_pred chhhccCCCCHHHhhCCHHHHHHHHHHHHc-----------CCCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEE
Confidence 455566778999999999999998877652 2334 599999999999999999999863 34777
Q ss_pred eecchhhhhhhhhhHHHHHHHHHHH--HcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeec
Q 007190 233 RAGSEFEEMFVGVGARRVRSLFQAA--KKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAAT 310 (613)
Q Consensus 233 is~s~~~~~~~g~~~~~vr~lf~~A--~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaT 310 (613)
+++++.... ......+....... ....+.+|+|||+|.+. ....+.|+..++.. ..++++|.+|
T Consensus 82 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~----------~~~~~~L~~~le~~--~~~~~~i~~~ 147 (327)
T 1iqp_A 82 LNASDERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALT----------QDAQQALRRTMEMF--SSNVRFILSC 147 (327)
T ss_dssp EETTCHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC----------HHHHHHHHHHHHHT--TTTEEEEEEE
T ss_pred eeccccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC----------HHHHHHHHHHHHhc--CCCCeEEEEe
Confidence 887654221 11111122211100 11457899999999983 34566777777743 3457788889
Q ss_pred CCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC
Q 007190 311 NLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDG 389 (613)
Q Consensus 311 N~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~ 389 (613)
|.++.+++++.+ ||. .+.+++|+.++...+++.++...+.. ++..+..++..+.| +.+.+.++++.+.. .
T Consensus 148 ~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~~-----~ 218 (327)
T 1iqp_A 148 NYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAAA-----L 218 (327)
T ss_dssp SCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHHT-----T
T ss_pred CCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHh-----c
Confidence 999999999988 885 88999999999999999988765543 34457778887765 67777777765442 2
Q ss_pred CCccCHHHHHHHH
Q 007190 390 GEKLTATELEFAK 402 (613)
Q Consensus 390 ~~~It~~dl~~A~ 402 (613)
...||.+++..+.
T Consensus 219 ~~~i~~~~v~~~~ 231 (327)
T 1iqp_A 219 DKKITDENVFMVA 231 (327)
T ss_dssp CSEECHHHHHHHT
T ss_pred CCCCCHHHHHHHH
Confidence 3468888876553
No 67
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.72 E-value=3.9e-17 Score=189.84 Aligned_cols=192 Identities=22% Similarity=0.305 Sum_probs=137.3
Q ss_pred CCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc----------CCCee
Q 007190 162 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFF 231 (613)
Q Consensus 162 ~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~----------~~pfi 231 (613)
.....+|++|+|.++.++.+.+++. ...+.++||+||||||||++|+++|+.+ +.+++
T Consensus 173 ~~~~~~ld~iiG~~~~i~~l~~~l~------------~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (758)
T 3pxi_A 173 IAKEDSLDPVIGRSKEIQRVIEVLS------------RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (758)
T ss_dssp HTTSSCSCCCCCCHHHHHHHHHHHH------------CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HHhhCCCCCccCchHHHHHHHHHHh------------CCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEE
Confidence 3445689999999999888877664 2344589999999999999999999986 78888
Q ss_pred EeecchhhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecC
Q 007190 232 YRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATN 311 (613)
Q Consensus 232 ~is~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN 311 (613)
.+++ ...|.|....+++.+|..+....|+||||| +. ....+.|+..|+ +..+.+|++||
T Consensus 241 ~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~~---------~~~~~~L~~~l~----~~~v~~I~at~ 299 (758)
T 3pxi_A 241 TLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA---------IDASNILKPSLA----RGELQCIGATT 299 (758)
T ss_dssp CC-------------CTTHHHHHHHHHTCCCCEEEEC-----C-----------------CCCTT----SSSCEEEEECC
T ss_pred Eecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----Cc---------hhHHHHHHHHHh----cCCEEEEeCCC
Confidence 8887 456788888899999999999999999999 11 123344444443 56789999999
Q ss_pred CCC-----CCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCC----CC-ChhcHHHHHhc-----CCCCCHHHHHH
Q 007190 312 LPD-----ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKP----LA-DDVDVKAIARG-----TPGFNGADLAN 376 (613)
Q Consensus 312 ~p~-----~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~----l~-~d~dl~~la~~-----t~G~sgadL~~ 376 (613)
.++ .+|++++| || ..|.|+.|+.+++.+||+.++.... .. .+..+..++.. +.++.+.+...
T Consensus 300 ~~~~~~~~~~d~al~r--Rf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ 376 (758)
T 3pxi_A 300 LDEYRKYIEKDAALER--RF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAID 376 (758)
T ss_dssp TTTTHHHHTTCSHHHH--SE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHH
T ss_pred hHHHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHH
Confidence 988 79999999 99 5699999999999999998776522 11 23334444432 34677788888
Q ss_pred HHHHHHHHHHHhC
Q 007190 377 LVNIAAIKAAVDG 389 (613)
Q Consensus 377 lv~~Aa~~A~~~~ 389 (613)
+++.|+..+....
T Consensus 377 ll~~a~~~~~~~~ 389 (758)
T 3pxi_A 377 LIDEAGSKVRLRS 389 (758)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhc
Confidence 8888877665554
No 68
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.71 E-value=7.7e-17 Score=187.33 Aligned_cols=195 Identities=21% Similarity=0.277 Sum_probs=139.3
Q ss_pred CcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCc-eEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhhhh
Q 007190 168 FKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPK-GILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV 243 (613)
Q Consensus 168 f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~-gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~~~ 243 (613)
.++|+|++++++.+.+.+...+.... ....|. ++||+||||||||++|+++|+.+ +.||+.++|+++.+.+.
T Consensus 490 ~~~viGq~~a~~~l~~~i~~~~~~~~----~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~ 565 (758)
T 3pxi_A 490 HSRVIGQDEAVVAVAKAVRRARAGLK----DPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHS 565 (758)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHTTTCS----CTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCC
T ss_pred hCcCcChHHHHHHHHHHHHHHHcccC----CCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccc
Confidence 36799999999999988876442111 112233 69999999999999999999987 78999999999987654
Q ss_pred hhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccc---------cCCceEEEeecCCCC
Q 007190 244 GVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QNEGIILMAATNLPD 314 (613)
Q Consensus 244 g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~---------~~~~ViVIaaTN~p~ 314 (613)
.. ...++...+...++||||||||.+ ....++.|+..|+... ...++++|+|||.+.
T Consensus 566 ~~----~~~l~~~~~~~~~~vl~lDEi~~~----------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~ 631 (758)
T 3pxi_A 566 TS----GGQLTEKVRRKPYSVVLLDAIEKA----------HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGA 631 (758)
T ss_dssp CC-------CHHHHHHCSSSEEEEECGGGS----------CHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSST
T ss_pred cc----cchhhHHHHhCCCeEEEEeCcccc----------CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCCh
Confidence 43 122334445566789999999988 3467777777777522 234579999999765
Q ss_pred C------------CChhhcCCCccceEEEccCCCHhhHHHHHHHHhccC-------CCC---ChhcHHHHHh--cCCCCC
Q 007190 315 I------------LDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK-------PLA---DDVDVKAIAR--GTPGFN 370 (613)
Q Consensus 315 ~------------Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~-------~l~---~d~dl~~la~--~t~G~s 370 (613)
. ++|++++ ||+..|.|++|+.+++..|++.++... ... ++..+..|++ ....+.
T Consensus 632 ~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~ 709 (758)
T 3pxi_A 632 SEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYG 709 (758)
T ss_dssp TCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTT
T ss_pred hhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCC
Confidence 4 7888887 999999999999999999999887542 111 2333566655 333456
Q ss_pred HHHHHHHHHHHH
Q 007190 371 GADLANLVNIAA 382 (613)
Q Consensus 371 gadL~~lv~~Aa 382 (613)
.++|+++++++.
T Consensus 710 ~R~L~~~i~~~v 721 (758)
T 3pxi_A 710 ARPLRRAIQKHV 721 (758)
T ss_dssp TTTHHHHHHHHT
T ss_pred ChHHHHHHHHHH
Confidence 678888887654
No 69
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.71 E-value=1.4e-17 Score=157.39 Aligned_cols=154 Identities=23% Similarity=0.339 Sum_probs=111.5
Q ss_pred CCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc----------CCCeeE
Q 007190 163 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFY 232 (613)
Q Consensus 163 ~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~----------~~pfi~ 232 (613)
....+|++++|.++..+.+.+.+ .. ..+.++||+||||||||++|+++++++ +.++++
T Consensus 16 ~~~~~~~~~~g~~~~~~~l~~~l---~~---------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~ 83 (187)
T 2p65_A 16 ARAGKLDPVIGRDTEIRRAIQIL---SR---------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVS 83 (187)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHH---TS---------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEE
T ss_pred HhccccchhhcchHHHHHHHHHH---hC---------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEE
Confidence 34568999999998766665544 22 235689999999999999999999987 788888
Q ss_pred eecchhhh--hhhhhhHHHHHHHHHHHHcC-CCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEee
Q 007190 233 RAGSEFEE--MFVGVGARRVRSLFQAAKKK-APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAA 309 (613)
Q Consensus 233 is~s~~~~--~~~g~~~~~vr~lf~~A~~~-~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaa 309 (613)
++++.+.. .+.+.....++.++..+... .|++|||||+|.+...+.... .....++.|...++ +..+++|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~-~~~~~~~~l~~~~~----~~~~~ii~~ 158 (187)
T 2p65_A 84 LDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAE-GALDAGNILKPMLA----RGELRCIGA 158 (187)
T ss_dssp ECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCT-TSCCTHHHHHHHHH----TTCSCEEEE
T ss_pred EeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccc-cchHHHHHHHHHHh----cCCeeEEEe
Confidence 88877653 24455566778888777654 688999999999975443111 01122333333333 356789999
Q ss_pred cCCCC-----CCChhhcCCCccceEEEccCCC
Q 007190 310 TNLPD-----ILDPALTRPGRFDRHIVVPNPD 336 (613)
Q Consensus 310 TN~p~-----~Ld~aLlRpgRFd~~I~v~~Pd 336 (613)
||.+. .+++++++ ||+. +.+++|+
T Consensus 159 ~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 159 TTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp ECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred cCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 99775 68999999 9984 9999886
No 70
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.70 E-value=1.4e-16 Score=187.51 Aligned_cols=205 Identities=22% Similarity=0.292 Sum_probs=137.5
Q ss_pred CCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc----------CCCeeE
Q 007190 163 KNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----------GVPFFY 232 (613)
Q Consensus 163 ~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~----------~~pfi~ 232 (613)
....+|++++|.++....+.+++. ...+.++||+||||||||++|+++|+++ +.++++
T Consensus 164 ~r~~~ld~viGr~~~i~~l~~~l~------------~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 231 (854)
T 1qvr_A 164 AAEGKLDPVIGRDEEIRRVIQILL------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVS 231 (854)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHH------------CSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEE
T ss_pred HhcCCCcccCCcHHHHHHHHHHHh------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEE
Confidence 345689999999987766666542 1234579999999999999999999987 889999
Q ss_pred eecchhh--hhhhhhhHHHHHHHHHHHHcC-CCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEee
Q 007190 233 RAGSEFE--EMFVGVGARRVRSLFQAAKKK-APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAA 309 (613)
Q Consensus 233 is~s~~~--~~~~g~~~~~vr~lf~~A~~~-~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaa 309 (613)
++++.+. ..+.|....+++.+|..+... .|+||||||+|.+.+...... .....+.|...++ +..+.+|++
T Consensus 232 l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g--~~~~~~~L~~~l~----~~~i~~I~a 305 (854)
T 1qvr_A 232 LQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEG--AVDAGNMLKPALA----RGELRLIGA 305 (854)
T ss_dssp ECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC---------------------HHHHH----TTCCCEEEE
T ss_pred eehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccc--hHHHHHHHHHHHh----CCCeEEEEe
Confidence 9998886 467788889999999999875 689999999999975543211 1223333333343 356789999
Q ss_pred cCCCC----CCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccC----CCC-ChhcHHHHHhc-----CCCCCHHHHH
Q 007190 310 TNLPD----ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK----PLA-DDVDVKAIARG-----TPGFNGADLA 375 (613)
Q Consensus 310 TN~p~----~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~----~l~-~d~dl~~la~~-----t~G~sgadL~ 375 (613)
||.++ .+|+++.| ||+. +.++.|+.+++.+||+.++... ... .+..+..++.. +..+.+....
T Consensus 306 t~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai 382 (854)
T 1qvr_A 306 TTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAI 382 (854)
T ss_dssp ECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHH
T ss_pred cCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHH
Confidence 99774 47999999 9986 9999999999999998776532 111 23334555443 4457788888
Q ss_pred HHHHHHHHHHHHh
Q 007190 376 NLVNIAAIKAAVD 388 (613)
Q Consensus 376 ~lv~~Aa~~A~~~ 388 (613)
.++++|+..+...
T Consensus 383 ~lldea~a~~~~~ 395 (854)
T 1qvr_A 383 DLIDEAAARLRMA 395 (854)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhh
Confidence 8888888766544
No 71
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.68 E-value=2.9e-16 Score=165.24 Aligned_cols=211 Identities=19% Similarity=0.209 Sum_probs=144.8
Q ss_pred cccCCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCC-----CeeE
Q 007190 158 EVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV-----PFFY 232 (613)
Q Consensus 158 ~~~~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~-----pfi~ 232 (613)
++.....+.+|++++|++++++.|...+. .++.|. ++|+||||||||++|+++|+.+.. .++.
T Consensus 14 ~~~~k~rp~~~~~~~g~~~~~~~L~~~i~-----------~g~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~ 81 (340)
T 1sxj_C 14 PWVEKYRPETLDEVYGQNEVITTVRKFVD-----------EGKLPH-LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLE 81 (340)
T ss_dssp CHHHHTCCSSGGGCCSCHHHHHHHHHHHH-----------TTCCCC-EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEE
T ss_pred chHHHhCCCcHHHhcCcHHHHHHHHHHHh-----------cCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCccceEEE
Confidence 55666778899999999999988887765 244564 999999999999999999998643 3566
Q ss_pred eecchhhhhhhhhhHHHHHHHHHHHH------cCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEE
Q 007190 233 RAGSEFEEMFVGVGARRVRSLFQAAK------KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIIL 306 (613)
Q Consensus 233 is~s~~~~~~~g~~~~~vr~lf~~A~------~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViV 306 (613)
+++++... ...+++.+.... ...+.|++|||+|.+. ....+.|+..++... ..+.+
T Consensus 82 ~~~~~~~~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~----------~~~~~~L~~~le~~~--~~~~~ 143 (340)
T 1sxj_C 82 LNASDDRG------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMT----------NAAQNALRRVIERYT--KNTRF 143 (340)
T ss_dssp ECTTSCCS------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC----------HHHHHHHHHHHHHTT--TTEEE
T ss_pred EcCccccc------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCC----------HHHHHHHHHHHhcCC--CCeEE
Confidence 66654211 123333333222 1236899999999983 345667777777543 45567
Q ss_pred EeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 007190 307 MAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKA 385 (613)
Q Consensus 307 IaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A 385 (613)
|.+||.+..+.+++++ |+. .+.+++++.++..+++...++...+. ++..+..++..+.| +.+.+.++++.+...+
T Consensus 144 il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G-~~r~~~~~l~~~~~~~ 219 (340)
T 1sxj_C 144 CVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG-DMRRVLNVLQSCKATL 219 (340)
T ss_dssp EEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT-CHHHHHHHTTTTTTTT
T ss_pred EEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhc
Confidence 7788999999999998 885 78999999999999999888544332 34446677776654 4555555554443222
Q ss_pred HHhCCCccCHHHHHHHH
Q 007190 386 AVDGGEKLTATELEFAK 402 (613)
Q Consensus 386 ~~~~~~~It~~dl~~A~ 402 (613)
...+...||.+++..++
T Consensus 220 ~~~~~~~it~~~v~~~~ 236 (340)
T 1sxj_C 220 DNPDEDEISDDVIYECC 236 (340)
T ss_dssp CSSSCCCBCHHHHHHHT
T ss_pred CCcccccccHHHHHHHh
Confidence 11122368888876653
No 72
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.68 E-value=2.7e-16 Score=182.71 Aligned_cols=198 Identities=20% Similarity=0.266 Sum_probs=138.7
Q ss_pred cccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhh-------
Q 007190 169 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM------- 241 (613)
Q Consensus 169 ~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~------- 241 (613)
++|+|++++++.+...+...+..-. ...++..++||+||||||||++|+++|+.++.+|+.++++++.+.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~---~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~ 534 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLG---HEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCS---CTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSC
T ss_pred hhccCHHHHHHHHHHHHHHHhcccC---CCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhc
Confidence 4689999999998887764331100 011233479999999999999999999999999999999988653
Q ss_pred -----hhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhcccc---------CCceEEE
Q 007190 242 -----FVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQ---------NEGIILM 307 (613)
Q Consensus 242 -----~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~---------~~~ViVI 307 (613)
|+|.... ..+....+...++||||||||.+ ....++.|+..|+.-.- -.+++||
T Consensus 535 g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~----------~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI 602 (758)
T 1r6b_X 535 GAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKA----------HPDVFNILLQVMDNGTLTDNNGRKADFRNVVLV 602 (758)
T ss_dssp CCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGS----------CHHHHHHHHHHHHHSEEEETTTEEEECTTEEEE
T ss_pred CCCCCCcCcccc--chHHHHHHhCCCcEEEEeCcccc----------CHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEE
Confidence 4443221 22344445566799999999987 34577888888874211 1458899
Q ss_pred eecCCCC-------------------------CCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccC-------C--C
Q 007190 308 AATNLPD-------------------------ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK-------P--L 353 (613)
Q Consensus 308 aaTN~p~-------------------------~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~-------~--l 353 (613)
+|||.+. .++|++++ ||+..|.|++|+.+++..|++.++.+. . +
T Consensus 603 ~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~ 680 (758)
T 1r6b_X 603 MTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSL 680 (758)
T ss_dssp EEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEE
T ss_pred EecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEE
Confidence 9999754 57788887 999999999999999999999988632 1 1
Q ss_pred -CChhcHHHHHhcC--CCCCHHHHHHHHHHHHH
Q 007190 354 -ADDVDVKAIARGT--PGFNGADLANLVNIAAI 383 (613)
Q Consensus 354 -~~d~dl~~la~~t--~G~sgadL~~lv~~Aa~ 383 (613)
.++..+..|++.. ..+..+++.++++.+..
T Consensus 681 ~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~ 713 (758)
T 1r6b_X 681 EVSQEARNWLAEKGYDRAMGARPMARVIQDNLK 713 (758)
T ss_dssp EECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHT
T ss_pred EeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHH
Confidence 1222344455422 23446677777765543
No 73
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.68 E-value=3.5e-16 Score=164.59 Aligned_cols=194 Identities=17% Similarity=0.196 Sum_probs=135.7
Q ss_pred ccCCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCC----------
Q 007190 159 VMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV---------- 228 (613)
Q Consensus 159 ~~~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~---------- 228 (613)
|.....+.+|++++|++++++.|+..+. + ..+.|. ++|+||||||||++++++++++..
T Consensus 4 w~~kyrP~~~~~~vg~~~~~~~l~~~~~--~--------~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~ 72 (354)
T 1sxj_E 4 WVDKYRPKSLNALSHNEELTNFLKSLSD--Q--------PRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDV 72 (354)
T ss_dssp CTTTTCCCSGGGCCSCHHHHHHHHTTTT--C--------TTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC-----
T ss_pred chhccCCCCHHHhcCCHHHHHHHHHHHh--h--------CCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecc
Confidence 4556677899999999999887766541 1 234565 999999999999999999996422
Q ss_pred -------------------CeeEeecchhhhhhhhhhHHHHHHHHHHHH--------------cCCCeEEEEcCCCcccc
Q 007190 229 -------------------PFFYRAGSEFEEMFVGVGARRVRSLFQAAK--------------KKAPCIIFIDEIDAVGS 275 (613)
Q Consensus 229 -------------------pfi~is~s~~~~~~~g~~~~~vr~lf~~A~--------------~~~P~ILfIDEiD~l~~ 275 (613)
+++.+++++... .....+++.+..+. ...|.||+|||++.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L-- 146 (354)
T 1sxj_E 73 RQFVTASNRKLELNVVSSPYHLEITPSDMGN----NDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL-- 146 (354)
T ss_dssp -------------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSS--
T ss_pred eeecccccccceeeeecccceEEecHhhcCC----cchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcccc--
Confidence 123333322110 00012444444432 235779999999997
Q ss_pred CCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-
Q 007190 276 TRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA- 354 (613)
Q Consensus 276 ~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~- 354 (613)
.....+.|+..++... .+..+|.+||.++.+.+.+++ |+ ..+.|++|+.++..++++..++..+..
T Consensus 147 --------~~~~~~~L~~~le~~~--~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 213 (354)
T 1sxj_E 147 --------TKDAQAALRRTMEKYS--KNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQL 213 (354)
T ss_dssp --------CHHHHHHHHHHHHHST--TTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCEE
T ss_pred --------CHHHHHHHHHHHHhhc--CCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCCC
Confidence 2345667777777543 356788888999999999998 88 789999999999999999988765443
Q ss_pred C-hhcHHHHHhcCCCCCHHHHHHHHHHHHH
Q 007190 355 D-DVDVKAIARGTPGFNGADLANLVNIAAI 383 (613)
Q Consensus 355 ~-d~dl~~la~~t~G~sgadL~~lv~~Aa~ 383 (613)
+ +..+..+++.+.| +.+++.++++.+..
T Consensus 214 ~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~ 242 (354)
T 1sxj_E 214 ETKDILKRIAQASNG-NLRVSLLMLESMAL 242 (354)
T ss_dssp CCSHHHHHHHHHHTT-CHHHHHHHHTHHHH
T ss_pred CcHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 3 4557888887765 67777777776554
No 74
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.68 E-value=7.3e-17 Score=178.50 Aligned_cols=209 Identities=17% Similarity=0.135 Sum_probs=134.9
Q ss_pred ccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcC--CCeeEeecch-hhhhhhhh-
Q 007190 170 DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG--VPFFYRAGSE-FEEMFVGV- 245 (613)
Q Consensus 170 dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~--~pfi~is~s~-~~~~~~g~- 245 (613)
.|+|.+++++.+...+. ...++||+||||||||++|+++|..++ .+|..+++.- -.+...|.
T Consensus 23 ~ivGq~~~i~~l~~al~--------------~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~ 88 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAAL--------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 88 (500)
T ss_dssp TCSSCHHHHHHHHHHHH--------------HTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCB
T ss_pred hhHHHHHHHHHHHHHHh--------------cCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcc
Confidence 47899998877655442 124799999999999999999999884 4666655531 11112221
Q ss_pred -hHH-HHHHHHHHHHcC---CCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccc--------cCCceEEEeecCC
Q 007190 246 -GAR-RVRSLFQAAKKK---APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE--------QNEGIILMAATNL 312 (613)
Q Consensus 246 -~~~-~vr~lf~~A~~~---~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~--------~~~~ViVIaaTN~ 312 (613)
... .-...|..+..+ .++|||||||+.+ ...+.+.|+..|+... .....++|+|||.
T Consensus 89 ~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~----------~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~ 158 (500)
T 3nbx_X 89 SIQALKDEGRYERLTSGYLPEAEIVFLDEIWKA----------GPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNE 158 (500)
T ss_dssp C----------CBCCTTSGGGCSEEEEESGGGC----------CHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESS
T ss_pred cHHHHhhchhHHhhhccCCCcceeeeHHhHhhh----------cHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhcccc
Confidence 010 012223322222 4679999999876 3456777888776311 1112245777775
Q ss_pred CCC---CChhhcCCCccceEEEccCCCH-hhHHHHHHHHhcc-------------------------CCCCChhcHHHHH
Q 007190 313 PDI---LDPALTRPGRFDRHIVVPNPDV-RGRQEILELYLQD-------------------------KPLADDVDVKAIA 363 (613)
Q Consensus 313 p~~---Ld~aLlRpgRFd~~I~v~~Pd~-~~R~~IL~~~l~~-------------------------~~l~~d~dl~~la 363 (613)
+.. +.+++++ ||...+.+|+|+. +++..|++.+... ..++ +.-++.++
T Consensus 159 lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~-d~v~e~i~ 235 (500)
T 3nbx_X 159 LPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLP-DHVFELIF 235 (500)
T ss_dssp CCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCC-HHHHHHHH
T ss_pred CCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCc-hHHHHHHH
Confidence 322 4458988 9999999999987 6788998876531 1111 11123333
Q ss_pred hc---------CCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHh
Q 007190 364 RG---------TPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRIL 406 (613)
Q Consensus 364 ~~---------t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A~~~v~ 406 (613)
.. ..|.|++.+..+++.|...|..++++.|+.+|+. +...++
T Consensus 236 ~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~~vL 286 (500)
T 3nbx_X 236 MLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI-LLKDCL 286 (500)
T ss_dssp HHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGGGTS
T ss_pred HHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH-HHHhhh
Confidence 22 3588999999999999999999999999999998 444433
No 75
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.67 E-value=2e-16 Score=160.24 Aligned_cols=204 Identities=22% Similarity=0.243 Sum_probs=124.5
Q ss_pred CCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcC---CCeeEeecchhhhhh
Q 007190 166 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG---VPFFYRAGSEFEEMF 242 (613)
Q Consensus 166 ~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~---~pfi~is~s~~~~~~ 242 (613)
.+|++++|.+++++.+.+.+..+.. .+.++||+||||||||++|++++..+. .||++++|+.+....
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~----------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAP----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTT----------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHhC----------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 4799999999999888887765332 235799999999999999999999874 789999998874321
Q ss_pred h-----hhhHH-------HHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhcc---------ccC
Q 007190 243 V-----GVGAR-------RVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF---------EQN 301 (613)
Q Consensus 243 ~-----g~~~~-------~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~---------~~~ 301 (613)
. |.... .....|..+ .+++|||||+|.+. ...+..|+..++.. ...
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~----------~~~q~~Ll~~l~~~~~~~~g~~~~~~ 139 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAP----------MMVQEKLLRVIEYGELERVGGSQPLQ 139 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSC----------HHHHHHHHHHHHHCEECCCCC--CEE
T ss_pred HHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcC----------HHHHHHHHHHHHhCCeecCCCccccc
Confidence 1 11000 001123322 34699999999983 23445566666531 113
Q ss_pred CceEEEeecCCC-------CCCChhhcCCCccceEEEccCCCHhhH----HHHHHHHhcc----CCC-----CChhcHHH
Q 007190 302 EGIILMAATNLP-------DILDPALTRPGRFDRHIVVPNPDVRGR----QEILELYLQD----KPL-----ADDVDVKA 361 (613)
Q Consensus 302 ~~ViVIaaTN~p-------~~Ld~aLlRpgRFd~~I~v~~Pd~~~R----~~IL~~~l~~----~~l-----~~d~dl~~ 361 (613)
.++.+|+|||.+ ..++++|.+ ||.. +.+..|+.++| ..+++++++. ... -++..+..
T Consensus 140 ~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~-~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~ 216 (265)
T 2bjv_A 140 VNVRLVCATNADLPAMVNEGTFRADLLD--ALAF-DVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARET 216 (265)
T ss_dssp CCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCS-EEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHH
T ss_pred CCeEEEEecCcCHHHHHHcCCccHHHHH--hhcC-cEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHH
Confidence 457899999975 246788887 8863 34445555444 4455555432 222 13334555
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHH
Q 007190 362 IARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATEL 398 (613)
Q Consensus 362 la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl 398 (613)
+....-..+.++|.++++.+...+ ....|+.+|+
T Consensus 217 L~~~~~~gn~reL~~~l~~~~~~~---~~~~i~~~~l 250 (265)
T 2bjv_A 217 LLNYRWPGNIRELKNVVERSVYRH---GTSDYPLDDI 250 (265)
T ss_dssp HHHSCCTTHHHHHHHHHHHHHHHH---CCSSSCBCCC
T ss_pred HHhCCCCCCHHHHHHHHHHHHHhC---CCCcCcHHHc
Confidence 655542336788999998877554 3456777665
No 76
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.64 E-value=8.8e-16 Score=159.69 Aligned_cols=202 Identities=21% Similarity=0.280 Sum_probs=130.1
Q ss_pred cccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhhhh--
Q 007190 169 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV-- 243 (613)
Q Consensus 169 ~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~~~-- 243 (613)
++++|.+++.+.+.+.+..+. ..+.++||+||||||||++|++++... +.||+.++|+.+.....
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 468999999988888876543 234579999999999999999999965 68999999987644221
Q ss_pred ---hhh-------HHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccc---------cCCce
Q 007190 244 ---GVG-------ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QNEGI 304 (613)
Q Consensus 244 ---g~~-------~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~---------~~~~V 304 (613)
|.. .......|..+. +++|||||||.+. ......|+..++... ...++
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~----------~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~ 138 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDIS----------PLMQVRLLRAIQEREVQRVGSNQTISVDV 138 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCC----------HHHHHHHHHHHHSSBCCBTTBCCCCBCCC
T ss_pred HhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCC----------HHHHHHHHHHHhcCEeeecCCcccccCCe
Confidence 110 001223455554 3599999999993 234556666666421 13458
Q ss_pred EEEeecCCC-------CCCChhhcCCCccceEEEccCCCHh----hHHHHHHHHhcc----CC----CCChhcHHHHHhc
Q 007190 305 ILMAATNLP-------DILDPALTRPGRFDRHIVVPNPDVR----GRQEILELYLQD----KP----LADDVDVKAIARG 365 (613)
Q Consensus 305 iVIaaTN~p-------~~Ld~aLlRpgRFd~~I~v~~Pd~~----~R~~IL~~~l~~----~~----l~~d~dl~~la~~ 365 (613)
.||+|||.+ ..+++.|.. ||. .+.+..|+.. +...+++++++. .. .-++..+..+...
T Consensus 139 riI~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~ 215 (304)
T 1ojl_A 139 RLIAATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHY 215 (304)
T ss_dssp EEEEEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHC
T ss_pred EEEEecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcC
Confidence 899999976 235566665 664 4444445544 444566666542 11 1233446667776
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Q 007190 366 TPGFNGADLANLVNIAAIKAAVDGGEKLTATELE 399 (613)
Q Consensus 366 t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~ 399 (613)
.-..+.++|.++++.+...+ ....|+.+|+.
T Consensus 216 ~wpGnvReL~~~l~~~~~~~---~~~~i~~~~l~ 246 (304)
T 1ojl_A 216 DWPGNIRELENAIERAVVLL---TGEYISERELP 246 (304)
T ss_dssp CCSSHHHHHHHHHHHHHHHC---CSSSBCGGGSC
T ss_pred CCCCCHHHHHHHHHHHHHhC---CCCcccHHhhh
Confidence 52236788888888877543 34567777763
No 77
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.62 E-value=2.5e-16 Score=178.16 Aligned_cols=218 Identities=20% Similarity=0.168 Sum_probs=139.9
Q ss_pred cccCCCHHHHHHHHHHHHHhcC-chhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEe----ecchhhhh--
Q 007190 169 KDVKGCDDAKQELVEVVEYLKN-PSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR----AGSEFEEM-- 241 (613)
Q Consensus 169 ~dV~G~~e~k~~L~eiv~~l~~-p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~i----s~s~~~~~-- 241 (613)
..|+|++++|+.+.-.+. .. +........+.+.++||+||||||||++|+++|+.++.+++.. ++.++...
T Consensus 295 ~~I~G~e~vk~al~~~l~--~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEALALALF--GGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp STTSCCHHHHHHHTTTTT--CCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred chhcChHHHHHHHHHHHh--CCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 457888888766632211 11 0000001112233799999999999999999999987665542 22222111
Q ss_pred ---hhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccc-----------cCCceEEE
Q 007190 242 ---FVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE-----------QNEGIILM 307 (613)
Q Consensus 242 ---~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~-----------~~~~ViVI 307 (613)
+.|... .....+..|. .+|+||||||.+.. ...+.|+..|+.-. .+.++.||
T Consensus 373 ~~~~~g~~~-~~~G~l~~A~---~gil~IDEid~l~~----------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vI 438 (595)
T 3f9v_A 373 REKGTGEYY-LEAGALVLAD---GGIAVIDEIDKMRD----------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVI 438 (595)
T ss_dssp SGGGTSSCS-EEECHHHHHS---SSEECCTTTTCCCS----------HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEE
T ss_pred ecccccccc-ccCCeeEecC---CCcEEeehhhhCCH----------hHhhhhHHHHhCCEEEEecCCcEEEecCceEEE
Confidence 111100 0011233332 35999999999832 34556666666321 13468899
Q ss_pred eecCCCC-------------CCChhhcCCCccce-EEEccCCCHhhHHHHHHHHhccCCC--------------------
Q 007190 308 AATNLPD-------------ILDPALTRPGRFDR-HIVVPNPDVRGRQEILELYLQDKPL-------------------- 353 (613)
Q Consensus 308 aaTN~p~-------------~Ld~aLlRpgRFd~-~I~v~~Pd~~~R~~IL~~~l~~~~l-------------------- 353 (613)
+|||++. .|++++++ |||. .+..+.|+.+ ...|.++.+.....
T Consensus 439 aatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar 515 (595)
T 3f9v_A 439 AAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYAR 515 (595)
T ss_dssp EEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHH
T ss_pred EEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHHH
Confidence 9999886 89999999 9985 5666778877 88888877653220
Q ss_pred ------CChhcHHHHHhc--------------CCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 007190 354 ------ADDVDVKAIARG--------------TPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRI 405 (613)
Q Consensus 354 ------~~d~dl~~la~~--------------t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A~~~v 405 (613)
-++...+.|... ..+.|++.+.++++.|...|..++++.|+.+|+.+|+.-+
T Consensus 516 ~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~ 587 (595)
T 3f9v_A 516 KYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIM 587 (595)
T ss_dssp HHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHH
T ss_pred HhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHH
Confidence 011112223222 3468999999999999999999999999999999998754
No 78
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.59 E-value=3.1e-15 Score=176.06 Aligned_cols=202 Identities=20% Similarity=0.277 Sum_probs=138.7
Q ss_pred CcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhhh--
Q 007190 168 FKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMF-- 242 (613)
Q Consensus 168 f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~~-- 242 (613)
+++|+|++++++.+...+...+.... ...++..++||+||||||||++|+++++.+ +.||+.++|+++.+..
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g~~---~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAGLK---DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGGCS---CSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhcccC---CCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH
Confidence 46789999999999988875432100 011233589999999999999999999988 7899999998875431
Q ss_pred ---hhh-----hHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccc---------cCCceE
Q 007190 243 ---VGV-----GARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE---------QNEGII 305 (613)
Q Consensus 243 ---~g~-----~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~---------~~~~Vi 305 (613)
.|. +......+....+...+++|||||+|.+ ...+++.|+..|+.-. .-.+++
T Consensus 634 s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l----------~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~i 703 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKA----------HPDVFNILLQILDDGRLTDSHGRTVDFRNTV 703 (854)
T ss_dssp GGC--------------CHHHHHHHCSSEEEEESSGGGS----------CHHHHHHHHHHHTTTEECCSSSCCEECTTEE
T ss_pred HHHcCCCCCCcCccccchHHHHHHhCCCeEEEEeccccc----------CHHHHHHHHHHhccCceECCCCCEeccCCeE
Confidence 111 1111123444445556789999999987 3567888888887431 013578
Q ss_pred EEeecCCC--------------------------CCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccC-------C
Q 007190 306 LMAATNLP--------------------------DILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK-------P 352 (613)
Q Consensus 306 VIaaTN~p--------------------------~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~-------~ 352 (613)
||+|||.+ ..+.|+|+. ||+..+.+++|+.+++..|++.++... .
T Consensus 704 iI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~ 781 (854)
T 1qvr_A 704 IILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKR 781 (854)
T ss_dssp EEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999972 245677776 999999999999999999999887631 1
Q ss_pred C---CChhcHHHHHhcCC--CCCHHHHHHHHHHHHHH
Q 007190 353 L---ADDVDVKAIARGTP--GFNGADLANLVNIAAIK 384 (613)
Q Consensus 353 l---~~d~dl~~la~~t~--G~sgadL~~lv~~Aa~~ 384 (613)
. -++..+..|+.... .++.++|.++++++...
T Consensus 782 ~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~ 818 (854)
T 1qvr_A 782 ISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELET 818 (854)
T ss_dssp CEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHH
T ss_pred ceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHH
Confidence 1 12333555665443 45677888888766543
No 79
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.55 E-value=1.5e-13 Score=146.83 Aligned_cols=227 Identities=16% Similarity=0.164 Sum_probs=153.0
Q ss_pred CCcccCCCHHHHHHHHHHH-HHhcCchhhhhcCCCCCceEEE--EccCCChHHHHHHHHHHhc---------CCCeeEee
Q 007190 167 TFKDVKGCDDAKQELVEVV-EYLKNPSKFTRLGGKLPKGILL--TGAPGTGKTLLAKAIAGEA---------GVPFFYRA 234 (613)
Q Consensus 167 ~f~dV~G~~e~k~~L~eiv-~~l~~p~~~~~lg~~~p~gvLL--~GPpGTGKT~LAralA~e~---------~~pfi~is 234 (613)
..++++|.++..+.|.+.+ ...... ....+..++| +||||||||++++++++++ +.++++++
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~------~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSG------AGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTS------SCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcC------CCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 3478899999888888876 543211 0124568999 9999999999999999876 56778888
Q ss_pred cchh------hhhhh----------hhhH-HHHHHHHHHHH-cCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhh
Q 007190 235 GSEF------EEMFV----------GVGA-RRVRSLFQAAK-KKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMD 296 (613)
Q Consensus 235 ~s~~------~~~~~----------g~~~-~~vr~lf~~A~-~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ld 296 (613)
|... ..... +... .....+..... ...|.+|+|||+|.+...+. .....+..++..++
T Consensus 94 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~----~~~~~l~~l~~~~~ 169 (412)
T 1w5s_A 94 AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR----IAAEDLYTLLRVHE 169 (412)
T ss_dssp GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT----SCHHHHHHHHTHHH
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC----cchHHHHHHHHHHH
Confidence 6432 11110 1111 11222222222 35588999999999854211 13456666666665
Q ss_pred cccc-C--CceEEEeecCCCC---CCC---hhhcCCCccceEEEccCCCHhhHHHHHHHHhccC---CCCChhcHHHHHh
Q 007190 297 GFEQ-N--EGIILMAATNLPD---ILD---PALTRPGRFDRHIVVPNPDVRGRQEILELYLQDK---PLADDVDVKAIAR 364 (613)
Q Consensus 297 g~~~-~--~~ViVIaaTN~p~---~Ld---~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~---~l~~d~dl~~la~ 364 (613)
.... . .++.+|++||.++ .++ +.+.+ ||...+.+++++.++..++++.++... ...++..+..+++
T Consensus 170 ~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~ 247 (412)
T 1w5s_A 170 EIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISD 247 (412)
T ss_dssp HSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHH
T ss_pred hcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHH
Confidence 4431 2 6788888887664 334 55666 566669999999999999998876531 1223445677888
Q ss_pred cCC------CCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHh
Q 007190 365 GTP------GFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRIL 406 (613)
Q Consensus 365 ~t~------G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A~~~v~ 406 (613)
.+. | +++.+.++++.+...+..++...++.+++..++....
T Consensus 248 ~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 248 VYGEDKGGDG-SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE 294 (412)
T ss_dssp HHCGGGTSCC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-
T ss_pred HHHHhccCCC-cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 777 6 6888999999888888888888999999998887643
No 80
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.52 E-value=2.2e-14 Score=132.53 Aligned_cols=113 Identities=12% Similarity=0.161 Sum_probs=82.0
Q ss_pred cccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhhhhhh
Q 007190 169 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGV 245 (613)
Q Consensus 169 ~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~~~g~ 245 (613)
++++|.+++.+.+.+.+..+.. .+.+|||+||||||||++|++++... +.||+ ++|+.+.+.
T Consensus 1 ~~iiG~s~~~~~~~~~~~~~a~----------~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 1 VELIGRSEWINQYRRRLQQLSE----------TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp ---CCSSHHHHHHHHHHHHHTT----------CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CCceeCCHHHHHHHHHHHHHhC----------CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 3678999998888887765432 33479999999999999999999986 78999 999876553
Q ss_pred hHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCC
Q 007190 246 GARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP 313 (613)
Q Consensus 246 ~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p 313 (613)
......|..+.. ++|||||+|.+. ......|+..|.. ...++.+|++||.+
T Consensus 66 --~~~~~~~~~a~~---g~l~ldei~~l~----------~~~q~~Ll~~l~~--~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 --PQLNDFIALAQG---GTLVLSHPEHLT----------REQQYHLVQLQSQ--EHRPFRLIGIGDTS 116 (145)
T ss_dssp --SCHHHHHHHHTT---SCEEEECGGGSC----------HHHHHHHHHHHHS--SSCSSCEEEEESSC
T ss_pred --hhhhcHHHHcCC---cEEEEcChHHCC----------HHHHHHHHHHHhh--cCCCEEEEEECCcC
Confidence 234556666643 599999999993 2344566666643 34457788899975
No 81
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.52 E-value=1.8e-13 Score=143.88 Aligned_cols=161 Identities=17% Similarity=0.177 Sum_probs=117.7
Q ss_pred CCCCCceEEEEccCCChHHHHHHHHHHhcCCCe------------------------eEeecchhhhhhhhhhHHHHHHH
Q 007190 198 GGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPF------------------------FYRAGSEFEEMFVGVGARRVRSL 253 (613)
Q Consensus 198 g~~~p~gvLL~GPpGTGKT~LAralA~e~~~pf------------------------i~is~s~~~~~~~g~~~~~vr~l 253 (613)
.++.|.++||+||||||||++|+++|+.+.++. +.++..+- -...+...++++
T Consensus 20 ~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~---~~~~~i~~ir~l 96 (334)
T 1a5t_A 20 AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG---KNTLGVDAVREV 96 (334)
T ss_dssp TTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT---CSSBCHHHHHHH
T ss_pred cCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc---CCCCCHHHHHHH
Confidence 356788999999999999999999999876432 22222100 001233457777
Q ss_pred HHHHHc----CCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCCCCChhhcCCCccceE
Q 007190 254 FQAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRH 329 (613)
Q Consensus 254 f~~A~~----~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~ 329 (613)
++.+.. ..+.|++|||+|.+ .....|.|+..++. +..++++|.+||.++.+.+.+++ |+ ..
T Consensus 97 ~~~~~~~~~~~~~kvviIdead~l----------~~~a~naLLk~lEe--p~~~~~~Il~t~~~~~l~~ti~S--Rc-~~ 161 (334)
T 1a5t_A 97 TEKLNEHARLGGAKVVWVTDAALL----------TDAAANALLKTLEE--PPAETWFFLATREPERLLATLRS--RC-RL 161 (334)
T ss_dssp HHHTTSCCTTSSCEEEEESCGGGB----------CHHHHHHHHHHHTS--CCTTEEEEEEESCGGGSCHHHHT--TS-EE
T ss_pred HHHHhhccccCCcEEEEECchhhc----------CHHHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHHHhh--cc-ee
Confidence 777653 34689999999999 24567889999984 45667888889999999999998 88 57
Q ss_pred EEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHH
Q 007190 330 IVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIA 381 (613)
Q Consensus 330 I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~A 381 (613)
+.|++|+.++..++++... . .++..+..+++.+.| +.+.+.++++.+
T Consensus 162 ~~~~~~~~~~~~~~L~~~~---~-~~~~~~~~l~~~s~G-~~r~a~~~l~~~ 208 (334)
T 1a5t_A 162 HYLAPPPEQYAVTWLSREV---T-MSQDALLAALRLSAG-SPGAALALFQGD 208 (334)
T ss_dssp EECCCCCHHHHHHHHHHHC---C-CCHHHHHHHHHHTTT-CHHHHHHTTSSH
T ss_pred eeCCCCCHHHHHHHHHHhc---C-CCHHHHHHHHHHcCC-CHHHHHHHhccc
Confidence 9999999999999998776 2 234456778887765 666666666544
No 82
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.50 E-value=1.5e-13 Score=155.68 Aligned_cols=217 Identities=24% Similarity=0.308 Sum_probs=136.7
Q ss_pred CCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCe---eEeecchh
Q 007190 162 EKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPF---FYRAGSEF 238 (613)
Q Consensus 162 ~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pf---i~is~s~~ 238 (613)
..++.+|++++|++.+++.+...+. ....++|+||||||||++|+++|+.+.... +.+.+...
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i~--------------~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~ 99 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAAN--------------QKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPE 99 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHHH--------------TTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTT
T ss_pred cccccccceEECchhhHhhcccccc--------------CCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcc
Confidence 3455789999999999887776654 124799999999999999999999875321 22211110
Q ss_pred h--------------hhhh------------------------------------------hhhHHHHHHHHHH------
Q 007190 239 E--------------EMFV------------------------------------------GVGARRVRSLFQA------ 256 (613)
Q Consensus 239 ~--------------~~~~------------------------------------------g~~~~~vr~lf~~------ 256 (613)
. .... .........+|..
T Consensus 100 ~~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~ 179 (604)
T 3k1j_A 100 DENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPF 179 (604)
T ss_dssp CTTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC
T ss_pred cccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechh
Confidence 0 0000 0000001112210
Q ss_pred -----------------HHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhcc-------------------cc
Q 007190 257 -----------------AKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF-------------------EQ 300 (613)
Q Consensus 257 -----------------A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~-------------------~~ 300 (613)
.....+.+|||||+|.+. ....+.|+..|+.- ..
T Consensus 180 ~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~----------~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~ 249 (604)
T 3k1j_A 180 QSGGLGTPAHERVEPGMIHRAHKGVLFIDEIATLS----------LKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPV 249 (604)
T ss_dssp ----CCCCGGGGEECCHHHHTTTSEEEETTGGGSC----------HHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCE
T ss_pred hcCCccccccccccCceeeecCCCEEEEechhhCC----------HHHHHHHHHHHHcCcEEecccccccccccCCCCcc
Confidence 111235699999999982 34555666665521 11
Q ss_pred CCceEEEeecCCC--CCCChhhcCCCccc---eEEEccCC---CHhhHHHHHHHHhcc------CCCCChhcHHHHHhc-
Q 007190 301 NEGIILMAATNLP--DILDPALTRPGRFD---RHIVVPNP---DVRGRQEILELYLQD------KPLADDVDVKAIARG- 365 (613)
Q Consensus 301 ~~~ViVIaaTN~p--~~Ld~aLlRpgRFd---~~I~v~~P---d~~~R~~IL~~~l~~------~~l~~d~dl~~la~~- 365 (613)
..++.||++||+. +.++++|++ ||+ ..+.++.. +.+....+++.+.+. ....++..+..|.+.
T Consensus 250 p~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~ 327 (604)
T 3k1j_A 250 PCDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREA 327 (604)
T ss_dssp ECCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHH
T ss_pred ceeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHH
Confidence 2367899999986 679999999 997 45665432 233455555444322 111233334555442
Q ss_pred --CCCC------CHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 007190 366 --TPGF------NGADLANLVNIAAIKAAVDGGEKLTATELEFAKDR 404 (613)
Q Consensus 366 --t~G~------sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A~~~ 404 (613)
..|- +.+++.++++.|...|..++++.|+.+|+.+|+.+
T Consensus 328 ~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 328 QKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred hhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 2553 78999999999999998899999999999999864
No 83
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.48 E-value=3.5e-14 Score=131.01 Aligned_cols=112 Identities=19% Similarity=0.228 Sum_probs=81.6
Q ss_pred ccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhhhhhhhHHH
Q 007190 170 DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARR 249 (613)
Q Consensus 170 dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~~~g~~~~~ 249 (613)
+++|.+++++.+.+.+..+.. .+.++||+||||||||++|++++...+ ||+.++|+++.+.+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~----------~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK----------RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT----------CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHhC----------CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------
Confidence 578999999998888765321 234799999999999999999999888 99999999876543
Q ss_pred HHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCC
Q 007190 250 VRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP 313 (613)
Q Consensus 250 vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p 313 (613)
...+|..+. +++|||||+|.+.. .....|+..++... +.++.+|+|||.+
T Consensus 67 ~~~~~~~a~---~~~l~lDei~~l~~----------~~q~~Ll~~l~~~~-~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 PMELLQKAE---GGVLYVGDIAQYSR----------NIQTGITFIIGKAE-RCRVRVIASCSYA 116 (143)
T ss_dssp HHHHHHHTT---TSEEEEEECTTCCH----------HHHHHHHHHHHHHT-TTTCEEEEEEEEC
T ss_pred hhhHHHhCC---CCeEEEeChHHCCH----------HHHHHHHHHHHhCC-CCCEEEEEecCCC
Confidence 455666554 46999999999932 33444555555322 4567888888865
No 84
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.44 E-value=9.8e-14 Score=170.48 Aligned_cols=151 Identities=17% Similarity=0.247 Sum_probs=109.6
Q ss_pred CCCCCCCcccCCCHHHHHHHHHHHHH-hcC----------chhhhh------cC----------CCCCce--EEEEccCC
Q 007190 162 EKNVKTFKDVKGCDDAKQELVEVVEY-LKN----------PSKFTR------LG----------GKLPKG--ILLTGAPG 212 (613)
Q Consensus 162 ~~~~~~f~dV~G~~e~k~~L~eiv~~-l~~----------p~~~~~------lg----------~~~p~g--vLL~GPpG 212 (613)
....++|+||.|.+++|+++.+.+.+ ++. ++.|.. .| +-+|+| +|+|||||
T Consensus 1013 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g 1092 (1706)
T 3cmw_A 1013 SASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 1092 (1706)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTT
T ss_pred ccCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCC
Confidence 34457999999999999999998887 422 556665 22 336777 99999999
Q ss_pred ChHHHHHHHHHHhc---CCCeeEeecchhh------------hhhhhh----hHHHHHHHHHHHHcCCCeEEEEcCCCcc
Q 007190 213 TGKTLLAKAIAGEA---GVPFFYRAGSEFE------------EMFVGV----GARRVRSLFQAAKKKAPCIIFIDEIDAV 273 (613)
Q Consensus 213 TGKT~LAralA~e~---~~pfi~is~s~~~------------~~~~g~----~~~~vr~lf~~A~~~~P~ILfIDEiD~l 273 (613)
||||+||++++.+. +-|.++++..+.. +.|++. +++.++.+|..|+..+||+||+|++|+|
T Consensus 1093 ~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al 1172 (1706)
T 3cmw_A 1093 SGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAAL 1172 (1706)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGC
T ss_pred CChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhc
Confidence 99999999999876 5676677665533 445566 7899999999999999999999999999
Q ss_pred ccCCc---cCC----cccHHHHHHHHHHhhccccCCceEEEeecCCC
Q 007190 274 GSTRK---QWE----GHTKKTLHQLLVEMDGFEQNEGIILMAATNLP 313 (613)
Q Consensus 274 ~~~r~---~~~----~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p 313 (613)
.+.+. ... +-..+.++++|.+|++.....+|+|| +||+.
T Consensus 1173 ~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1173 TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp CCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred CcccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 88743 111 22356799999999998877888888 67754
No 85
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.39 E-value=2.4e-12 Score=133.96 Aligned_cols=142 Identities=12% Similarity=0.161 Sum_probs=106.4
Q ss_pred CCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc------CCCeeEeecchhhhhhhhhh
Q 007190 173 GCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA------GVPFFYRAGSEFEEMFVGVG 246 (613)
Q Consensus 173 G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~------~~pfi~is~s~~~~~~~g~~ 246 (613)
|++++.+.|+..+. .++ +..+|||||||+|||++|+++|+.+ ...++.+++++- ..+
T Consensus 1 g~~~~~~~L~~~i~-----------~~~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~~ 63 (305)
T 2gno_A 1 GAKDQLETLKRIIE-----------KSE-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NIG 63 (305)
T ss_dssp ---CHHHHHHHHHH-----------TCS-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CBC
T ss_pred ChHHHHHHHHHHHH-----------CCC-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CCC
Confidence 56677777776664 123 4489999999999999999999874 346777765420 123
Q ss_pred HHHHHHHHHHHHcC----CCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCCCCChhhcC
Q 007190 247 ARRVRSLFQAAKKK----APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTR 322 (613)
Q Consensus 247 ~~~vr~lf~~A~~~----~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlR 322 (613)
...++++.+.+... ...|+||||+|.+ .....|.|+..|+. +...+++|.+||.|+.+.|++++
T Consensus 64 id~ir~li~~~~~~p~~~~~kvviIdead~l----------t~~a~naLLk~LEe--p~~~t~fIl~t~~~~kl~~tI~S 131 (305)
T 2gno_A 64 IDDIRTIKDFLNYSPELYTRKYVIVHDCERM----------TQQAANAFLKALEE--PPEYAVIVLNTRRWHYLLPTIKS 131 (305)
T ss_dssp HHHHHHHHHHHTSCCSSSSSEEEEETTGGGB----------CHHHHHHTHHHHHS--CCTTEEEEEEESCGGGSCHHHHT
T ss_pred HHHHHHHHHHHhhccccCCceEEEeccHHHh----------CHHHHHHHHHHHhC--CCCCeEEEEEECChHhChHHHHc
Confidence 44577888777543 2469999999999 34567889999984 45567777788889999999998
Q ss_pred CCccceEEEccCCCHhhHHHHHHHHh
Q 007190 323 PGRFDRHIVVPNPDVRGRQEILELYL 348 (613)
Q Consensus 323 pgRFd~~I~v~~Pd~~~R~~IL~~~l 348 (613)
| .+.|++|+.++..++++..+
T Consensus 132 --R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 132 --R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp --T---SEEEECCCCHHHHHHHHHHH
T ss_pred --e---eEeCCCCCHHHHHHHHHHHh
Confidence 7 88999999999999998877
No 86
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.34 E-value=2.9e-12 Score=106.15 Aligned_cols=75 Identities=23% Similarity=0.419 Sum_probs=72.0
Q ss_pred cCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhc
Q 007190 333 PNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRILM 407 (613)
Q Consensus 333 ~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A~~~v~~ 407 (613)
|+||.++|.+||+.|+++.++..++|+..||+.|+||||+||.++|++|++.|.+++...|+.+||..|+++++.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Confidence 789999999999999999988889999999999999999999999999999999999999999999999999865
No 87
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.31 E-value=4e-12 Score=107.59 Aligned_cols=77 Identities=21% Similarity=0.373 Sum_probs=73.0
Q ss_pred ccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcC
Q 007190 332 VPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRILMG 408 (613)
Q Consensus 332 v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A~~~v~~g 408 (613)
-.+||.++|.+||+.++++.++..++|+..||+.|+||||+||.++|++|++.|.++....|+.+||..|++++.++
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCC
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccC
Confidence 36899999999999999999888899999999999999999999999999999999999999999999999998765
No 88
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.30 E-value=5.7e-12 Score=107.02 Aligned_cols=79 Identities=20% Similarity=0.296 Sum_probs=69.8
Q ss_pred CHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcCCccccc
Q 007190 336 DVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRILMGTERKTM 414 (613)
Q Consensus 336 d~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A~~~v~~g~~~~~~ 414 (613)
|.++|.+||+.|+++.++.+++|+..||+.|+||||+||.++|++|++.|.+++...|+.+||..|++++.+|.++++.
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~~~~~ 80 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKFSS 80 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC-------
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCcccccc
Confidence 6789999999999999998999999999999999999999999999999999999999999999999999999877654
No 89
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.26 E-value=1.1e-11 Score=132.92 Aligned_cols=204 Identities=20% Similarity=0.258 Sum_probs=126.9
Q ss_pred CcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhhhh-
Q 007190 168 FKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV- 243 (613)
Q Consensus 168 f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~~~- 243 (613)
|++++|..+..+++.+.+..+... ...+||+|++|||||++|++++... +.||+.++|+.+.+...
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~----------~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCA----------ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTC----------CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhcCC----------CCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 567888888888888777654432 2368999999999999999999866 47999999988644321
Q ss_pred ----h--------hhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhcc--c-------cCC
Q 007190 244 ----G--------VGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF--E-------QNE 302 (613)
Q Consensus 244 ----g--------~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~--~-------~~~ 302 (613)
| ... .....|..|.. .+||||||+.+. ...+..|+..++.- . ...
T Consensus 206 ~elfg~~~g~~tga~~-~~~g~~~~a~~---gtlfldei~~l~----------~~~q~~Ll~~l~~~~~~~~g~~~~~~~ 271 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVS-SKEGFFELADG---GTLFLDEIGELS----------LEAQAKLLRVIESGKFYRLGGRKEIEV 271 (387)
T ss_dssp HHHHCBCTTSSTTCCS-CBCCHHHHTTT---SEEEEESGGGCC----------HHHHHHHHHHHHHSEECCBTCCSBEEC
T ss_pred HHhcCCCCCCCCCccc-ccCCceeeCCC---cEEEEcChhhCC----------HHHHHHHHHHHhcCcEEeCCCCceeec
Confidence 1 110 12245555544 499999999992 34455556555431 1 123
Q ss_pred ceEEEeecCCCCCCChhhcCCCccce-------EEEccCCCHhhHH----HHHHHHhcc----CCCC----ChhcHHHHH
Q 007190 303 GIILMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGRQ----EILELYLQD----KPLA----DDVDVKAIA 363 (613)
Q Consensus 303 ~ViVIaaTN~p~~Ld~aLlRpgRFd~-------~I~v~~Pd~~~R~----~IL~~~l~~----~~l~----~d~dl~~la 363 (613)
++.+|+|||.. +. .+.+.|+|.. .+.+..|...+|. .++++++++ .... ++..+..+.
T Consensus 272 ~~rii~at~~~--l~-~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~ 348 (387)
T 1ny5_A 272 NVRILAATNRN--IK-ELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLL 348 (387)
T ss_dssp CCEEEEEESSC--HH-HHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHH
T ss_pred cEEEEEeCCCC--HH-HHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Confidence 57899999964 22 2223345532 4456667776663 344554432 2211 223345555
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 007190 364 RGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFA 401 (613)
Q Consensus 364 ~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A 401 (613)
...--.+.++|++++++|...+ ....|+.+|+...
T Consensus 349 ~~~wpGNvreL~~~i~~~~~~~---~~~~i~~~~l~~~ 383 (387)
T 1ny5_A 349 SYPWYGNVRELKNVIERAVLFS---EGKFIDRGELSCL 383 (387)
T ss_dssp HSCCTTHHHHHHHHHHHHHHHC---CSSEECHHHHHHH
T ss_pred hCCCCcHHHHHHHHHHHHHHhC---CCCcCcHHHCcHh
Confidence 4432224578888888887654 4568998888643
No 90
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.22 E-value=4.1e-11 Score=153.20 Aligned_cols=138 Identities=23% Similarity=0.320 Sum_probs=95.5
Q ss_pred CceEEEEccCCChHHHHHHHH-HHhcCCCeeEeecchhhhhhhhhhHHHHHHHHHHHH---------------cCCCeEE
Q 007190 202 PKGILLTGAPGTGKTLLAKAI-AGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAK---------------KKAPCII 265 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAral-A~e~~~pfi~is~s~~~~~~~g~~~~~vr~lf~~A~---------------~~~P~IL 265 (613)
.+++||+||||||||++|+.+ +...+.+++.++++...+. ..+...+.... .+.++||
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~------~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~Vl 1340 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTT------EHILSALHRHTNYVTTSKGLTLLPKSDIKNLVL 1340 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCH------HHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCH------HHHHHHHHHHhhhccccCCccccCCCCCceEEE
Confidence 368999999999999999554 4444778888887765432 23344444321 2235799
Q ss_pred EEcCCCccccCCccCCcccHHHHHHHHHHhhccccC--------CceEEEeecCCCC-----CCChhhcCCCccceEEEc
Q 007190 266 FIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQN--------EGIILMAATNLPD-----ILDPALTRPGRFDRHIVV 332 (613)
Q Consensus 266 fIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~--------~~ViVIaaTN~p~-----~Ld~aLlRpgRFd~~I~v 332 (613)
||||+|.....+. +.......+.+++ +..++... .++.+|||||+|. .|+++++| || ..+.+
T Consensus 1341 FiDEinmp~~d~y-g~q~~lelLRq~l-e~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~vi~i 1415 (2695)
T 4akg_A 1341 FCDEINLPKLDKY-GSQNVVLFLRQLM-EKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-AILYL 1415 (2695)
T ss_dssp EEETTTCSCCCSS-SCCHHHHHHHHHH-HTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-EEEEC
T ss_pred Eeccccccccccc-CchhHHHHHHHHH-hcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-eEEEe
Confidence 9999997533221 1122344555555 22233211 3589999999994 89999999 99 88999
Q ss_pred cCCCHhhHHHHHHHHhcc
Q 007190 333 PNPDVRGRQEILELYLQD 350 (613)
Q Consensus 333 ~~Pd~~~R~~IL~~~l~~ 350 (613)
+.|+.+++..|+..+++.
T Consensus 1416 ~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1416 GYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp CCCTTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999988754
No 91
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.18 E-value=8e-11 Score=111.91 Aligned_cols=134 Identities=13% Similarity=0.167 Sum_probs=79.2
Q ss_pred CCCCCcccCCC-HHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc----CCCeeEeecchh
Q 007190 164 NVKTFKDVKGC-DDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGSEF 238 (613)
Q Consensus 164 ~~~~f~dV~G~-~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~----~~pfi~is~s~~ 238 (613)
...+|+++++. +..++.+..+..++.+-. ...+.+++|+||||||||+|++++++.+ |.++++++..++
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~------~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~ 78 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTIRVFVHNFN------PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDL 78 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHHHHHHHSCC------GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHH
T ss_pred hhCccccccCCCHHHHHHHHHHHHHHHhcc------ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 34689999874 333444444444433321 2235689999999999999999999876 678888888877
Q ss_pred hhhhhhhhHH-HHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCC
Q 007190 239 EEMFVGVGAR-RVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD 314 (613)
Q Consensus 239 ~~~~~g~~~~-~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~ 314 (613)
...+...... ....++... ..|.+|+|||++..+. +......+..++.... . .+..+|.+||.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~~~~-----~~~~~~~l~~ll~~~~---~-~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 79 IFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGSERL-----SDWQRELISYIITYRY---N-NLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSSSCC-----CHHHHHHHHHHHHHHH---H-TTCEEEEECCCCS
T ss_pred HHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCCCcC-----CHHHHHHHHHHHHHHH---H-cCCCEEEEcCCCh
Confidence 6544322111 001222222 2567999999986522 1123344455554432 1 2345666777653
No 92
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.12 E-value=2.1e-10 Score=110.88 Aligned_cols=103 Identities=24% Similarity=0.262 Sum_probs=65.6
Q ss_pred CCCCCcccCCCHHH-HHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhh
Q 007190 164 NVKTFKDVKGCDDA-KQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFE 239 (613)
Q Consensus 164 ~~~~f~dV~G~~e~-k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~ 239 (613)
...+|+++++.+.. ++.+..+..++.+... ...|++++|+||||||||++|+++++++ +.++++++++++.
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~ 94 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEYEP-----GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELF 94 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHCCS-----SCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHhhh-----ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHH
Confidence 45689999987643 3233333333332211 1134789999999999999999999977 6789999988776
Q ss_pred hhhhhhh-HHHHHHHHHHHHcCCCeEEEEcCCCcc
Q 007190 240 EMFVGVG-ARRVRSLFQAAKKKAPCIIFIDEIDAV 273 (613)
Q Consensus 240 ~~~~g~~-~~~vr~lf~~A~~~~P~ILfIDEiD~l 273 (613)
..+.... ...+..++..... +.+|+|||++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~ 127 (202)
T 2w58_A 95 RELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAE 127 (202)
T ss_dssp HHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC
T ss_pred HHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence 5433211 0112233333333 359999999876
No 93
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.08 E-value=1.8e-10 Score=96.45 Aligned_cols=74 Identities=18% Similarity=0.263 Sum_probs=68.7
Q ss_pred CHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcCC
Q 007190 336 DVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRILMGT 409 (613)
Q Consensus 336 d~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A~~~v~~g~ 409 (613)
|.++|.+||+.|+++.++.+++|+..||+.|+||||+||.++|++|++.|.+++...|+.+||..|+.++.++.
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps~ 75 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKD 75 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC--
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccCc
Confidence 67899999999999998888999999999999999999999999999999999999999999999999987653
No 94
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.07 E-value=2.1e-09 Score=116.72 Aligned_cols=213 Identities=16% Similarity=0.147 Sum_probs=124.8
Q ss_pred ccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHH-HHhcCCCeeEeec--ch---hhhhhh
Q 007190 170 DVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAI-AGEAGVPFFYRAG--SE---FEEMFV 243 (613)
Q Consensus 170 dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAral-A~e~~~pfi~is~--s~---~~~~~~ 243 (613)
.|.|++.+|..|.-.+- ....+ .+-.-++||.|+||| ||++|+++ ++-+.. .+++++ +. +...+.
T Consensus 214 pI~G~e~vK~aLll~L~--GG~~k-----~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR-~~ft~g~~ss~~gLt~s~r 284 (506)
T 3f8t_A 214 PLPGAEEVGKMLALQLF--SCVGK-----NSERLHVLLAGYPVV-CSEILHHVLDHLAPR-GVYVDLRRTELTDLTAVLK 284 (506)
T ss_dssp CSTTCHHHHHHHHHHHT--TCCSS-----GGGCCCEEEESCHHH-HHHHHHHHHHHTCSS-EEEEEGGGCCHHHHSEEEE
T ss_pred ccCCCHHHHHHHHHHHc--CCccc-----cCCceeEEEECCCCh-HHHHHHHHHHHhCCC-eEEecCCCCCccCceEEEE
Confidence 37899888766644331 11001 112236999999999 99999999 665533 233322 11 110000
Q ss_pred hh-hHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhcc-------ccCCceEEEeecCCCC-
Q 007190 244 GV-GARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF-------EQNEGIILMAATNLPD- 314 (613)
Q Consensus 244 g~-~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~-------~~~~~ViVIaaTN~p~- 314 (613)
+. +...-...+..|.. .++|||||+.+ ...++..|+..|+.- .-+..+.||||+|...
T Consensus 285 ~~tG~~~~~G~l~LAdg---Gvl~lDEIn~~----------~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~ 351 (506)
T 3f8t_A 285 EDRGWALRAGAAVLADG---GILAVDHLEGA----------PEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQ 351 (506)
T ss_dssp ESSSEEEEECHHHHTTT---SEEEEECCTTC----------CHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC-
T ss_pred cCCCcccCCCeeEEcCC---CeeehHhhhhC----------CHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccc
Confidence 00 00000122334433 39999999988 345666777766631 1245689999999865
Q ss_pred ----------CCChhhcCCCccceEEE-ccCCCHhhH---------HHHHHH---Hhc-c--CCCCChhcHHHHH-----
Q 007190 315 ----------ILDPALTRPGRFDRHIV-VPNPDVRGR---------QEILEL---YLQ-D--KPLADDVDVKAIA----- 363 (613)
Q Consensus 315 ----------~Ld~aLlRpgRFd~~I~-v~~Pd~~~R---------~~IL~~---~l~-~--~~l~~d~dl~~la----- 363 (613)
.|+++++. |||..+. ++.|+.+.- .+.++. +++ . .+.-++...+.|.
T Consensus 352 yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~ 429 (506)
T 3f8t_A 352 WPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYET 429 (506)
T ss_dssp -CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHH
T ss_pred cCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHH
Confidence 78899998 9988554 456654331 122222 233 1 1111121111111
Q ss_pred ------------hcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHh
Q 007190 364 ------------RGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRIL 406 (613)
Q Consensus 364 ------------~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A~~~v~ 406 (613)
...-|.|++.+..+++-|...|..++++.|+.+|+..|+.-+.
T Consensus 430 tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~ 484 (506)
T 3f8t_A 430 RREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVD 484 (506)
T ss_dssp HHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred HhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHH
Confidence 0355789999999999999999999999999999999987553
No 95
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=99.01 E-value=1.3e-10 Score=97.23 Aligned_cols=73 Identities=18% Similarity=0.212 Sum_probs=54.6
Q ss_pred hhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcCCc
Q 007190 338 RGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRILMGTE 410 (613)
Q Consensus 338 ~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A~~~v~~g~~ 410 (613)
++|.+||+.|+++.++.+++|+..||+.|+||||+||.++|++|++.|.+++...|+.+||..|++++..|..
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~~~~ 73 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTDN 73 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTCC---
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHHcCcC
Confidence 4789999999999888889999999999999999999999999999999999999999999999999876643
No 96
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.98 E-value=1.7e-09 Score=115.25 Aligned_cols=190 Identities=21% Similarity=0.291 Sum_probs=114.1
Q ss_pred cccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCC--CeeEeecchhhhhh----
Q 007190 169 KDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGV--PFFYRAGSEFEEMF---- 242 (613)
Q Consensus 169 ~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~--pfi~is~s~~~~~~---- 242 (613)
.+++|......++.+.+..+... ...+|++|++||||+++|++++...+. +|+.++|+.+.+..
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~----------~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKS----------KAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTS----------CSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred ccccccchHHHHHHhhhhhhhcc----------chhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 45789988888888777654432 225999999999999999999987754 39999998764321
Q ss_pred -hhhh-------HHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhcc--c---c----CCceE
Q 007190 243 -VGVG-------ARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGF--E---Q----NEGII 305 (613)
Q Consensus 243 -~g~~-------~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~--~---~----~~~Vi 305 (613)
.|.. .+.....|+.|..+ +||||||+.+ ....+..|+..++.- . . ...+.
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~~g---tlfldei~~l----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~r 265 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELADQG---TLFLDEVGEL----------DQRVQAKLLRVLETGSFTRLGGNQKIEVDIR 265 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTTTS---EEEEETGGGS----------CHHHHHHHHHHHHHSEECCBTCCCBEECCCE
T ss_pred hcCccccccCCcccccCChHhhcCCC---eEEecChhhC----------CHHHHHHHHHHHHhCCcccCCCCcceeeeeE
Confidence 1110 01112355555443 8999999999 234555666665531 1 1 22578
Q ss_pred EEeecCCCCCCChhhcCCCccce-------EEEccCCCHhhH----HHHHHHHhcc----CCC----CChhcHHHHHhcC
Q 007190 306 LMAATNLPDILDPALTRPGRFDR-------HIVVPNPDVRGR----QEILELYLQD----KPL----ADDVDVKAIARGT 366 (613)
Q Consensus 306 VIaaTN~p~~Ld~aLlRpgRFd~-------~I~v~~Pd~~~R----~~IL~~~l~~----~~l----~~d~dl~~la~~t 366 (613)
+|+|||.. +. .....|+|.. .+.+..|...+| ..++++++++ ... -++..+..|....
T Consensus 266 ii~at~~~--l~-~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~ 342 (368)
T 3dzd_A 266 VISATNKN--LE-EEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQE 342 (368)
T ss_dssp EEEEESSC--HH-HHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCC
T ss_pred EEEecCCC--HH-HHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCC
Confidence 99999953 22 2223355533 444455555554 4455555532 111 1233355566554
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 007190 367 PGFNGADLANLVNIAAIK 384 (613)
Q Consensus 367 ~G~sgadL~~lv~~Aa~~ 384 (613)
---+.++|+|++++|...
T Consensus 343 wpGNvreL~n~i~~~~~~ 360 (368)
T 3dzd_A 343 WKGNVRELKNLIERAVIL 360 (368)
T ss_dssp CTTHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHh
Confidence 222557788888777654
No 97
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.96 E-value=3.6e-08 Score=102.23 Aligned_cols=185 Identities=18% Similarity=0.180 Sum_probs=112.4
Q ss_pred CCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhh-------
Q 007190 167 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE------- 239 (613)
Q Consensus 167 ~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~------- 239 (613)
.-+.++|.++..+.|.+ + .. ..++++||+|+|||+|++.++++.+.+++++++....
T Consensus 11 ~~~~~~gR~~el~~L~~-l---~~------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-L---RA------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISY 74 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-T---CS------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCH
T ss_pred CHHHhcChHHHHHHHHH-h---cC------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCH
Confidence 45667999887666655 3 21 3799999999999999999999988778888765430
Q ss_pred hhhhhh---------------------------------------hHHHHHHHHHHHHcC--CCeEEEEcCCCccccCCc
Q 007190 240 EMFVGV---------------------------------------GARRVRSLFQAAKKK--APCIIFIDEIDAVGSTRK 278 (613)
Q Consensus 240 ~~~~g~---------------------------------------~~~~vr~lf~~A~~~--~P~ILfIDEiD~l~~~r~ 278 (613)
..+... ....+..++...... .|.+|+|||+|.+....
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~- 153 (357)
T 2fna_A 75 KDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLR- 153 (357)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCT-
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccC-
Confidence 000000 011234455544432 38999999999985420
Q ss_pred cCCcccHHHHHHHHHHhhccccCCceEEEeecCCCCCC---------ChhhcCCCccceEEEccCCCHhhHHHHHHHHhc
Q 007190 279 QWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL---------DPALTRPGRFDRHIVVPNPDVRGRQEILELYLQ 349 (613)
Q Consensus 279 ~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~L---------d~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~ 349 (613)
.......+..+... . .++.+|.+++....+ ...+ .||+...+.+++.+.++..++++..+.
T Consensus 154 --~~~~~~~l~~~~~~---~---~~~~~i~~g~~~~~l~~~l~~~~~~~~l--~~r~~~~i~l~~l~~~e~~~~l~~~~~ 223 (357)
T 2fna_A 154 --GVNLLPALAYAYDN---L---KRIKFIMSGSEMGLLYDYLRVEDPESPL--FGRAFSTVELKPFSREEAIEFLRRGFQ 223 (357)
T ss_dssp --TCCCHHHHHHHHHH---C---TTEEEEEEESSHHHHHHHTTTTCTTSTT--TTCCCEEEEECCCCHHHHHHHHHHHHH
T ss_pred --chhHHHHHHHHHHc---C---CCeEEEEEcCchHHHHHHHhccCCCCcc--ccCccceeecCCCCHHHHHHHHHHHHH
Confidence 11123334333322 1 244555555432111 1112 246667899999999999999988775
Q ss_pred cCCCCChhcHHHHHhcCCCCCHHHHHHHHHH
Q 007190 350 DKPLADDVDVKAIARGTPGFNGADLANLVNI 380 (613)
Q Consensus 350 ~~~l~~d~dl~~la~~t~G~sgadL~~lv~~ 380 (613)
......+ +...+...+.|+ +.-+..++..
T Consensus 224 ~~~~~~~-~~~~i~~~t~G~-P~~l~~~~~~ 252 (357)
T 2fna_A 224 EADIDFK-DYEVVYEKIGGI-PGWLTYFGFI 252 (357)
T ss_dssp HHTCCCC-CHHHHHHHHCSC-HHHHHHHHHH
T ss_pred HcCCCCC-cHHHHHHHhCCC-HHHHHHHHHH
Confidence 3332222 237788888874 5556666543
No 98
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.95 E-value=5.2e-10 Score=116.44 Aligned_cols=115 Identities=21% Similarity=0.238 Sum_probs=74.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCeeEeec--chhhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCcc-
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAG--SEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQ- 279 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~--s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~- 279 (613)
..++|+||||||||+||.++|.+.+.++++++. .+....+.......+..+++...+.. +||||+++.+......
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~~ 201 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGGN 201 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC------
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccccccccc
Confidence 457999999999999999999876555444444 33222222333445555666665554 9999999999544322
Q ss_pred -CCcccHHHHHHHHHHhhccccCCceEEEeecCCCCCCChhh
Q 007190 280 -WEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPAL 320 (613)
Q Consensus 280 -~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aL 320 (613)
..+...+.+++++..|.++....++.+|.++| |...|+++
T Consensus 202 s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 202 TTSGGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred cccchHHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 11223566778888887776666788888888 55666654
No 99
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.92 E-value=1.4e-09 Score=101.15 Aligned_cols=104 Identities=18% Similarity=0.277 Sum_probs=67.3
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCc
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRK 278 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~ 278 (613)
...++|+||+|+|||+|++++++.+ |.+.+++++.++... +....|.+|+|||++.+...
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~-- 98 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNE-- 98 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSH--
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChH--
Confidence 3579999999999999999999987 777888888776543 11234789999999987321
Q ss_pred cCCcccHHHHHHHHHHhhccccCCc-eEEEeecCCCCCCC--hhhcCCCccceEEEc
Q 007190 279 QWEGHTKKTLHQLLVEMDGFEQNEG-IILMAATNLPDILD--PALTRPGRFDRHIVV 332 (613)
Q Consensus 279 ~~~~~~~~~l~~LL~~ldg~~~~~~-ViVIaaTN~p~~Ld--~aLlRpgRFd~~I~v 332 (613)
..+.+..++..+. .+.. +++|++...|..+. +.+.+ ||..-..+
T Consensus 99 -----~~~~l~~li~~~~---~~g~~~iiits~~~p~~l~~~~~L~S--Rl~~g~~~ 145 (149)
T 2kjq_A 99 -----EQALLFSIFNRFR---NSGKGFLLLGSEYTPQQLVIREDLRT--RMAYCLVY 145 (149)
T ss_dssp -----HHHHHHHHHHHHH---HHTCCEEEEEESSCTTTSSCCHHHHH--HGGGSEEC
T ss_pred -----HHHHHHHHHHHHH---HcCCcEEEEECCCCHHHccccHHHHH--HHhcCeeE
Confidence 1344444444432 2222 25554433555443 67776 77654443
No 100
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.90 E-value=1.2e-07 Score=98.27 Aligned_cols=188 Identities=16% Similarity=0.148 Sum_probs=111.4
Q ss_pred CCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhh-------
Q 007190 167 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE------- 239 (613)
Q Consensus 167 ~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~------- 239 (613)
.-+.++|.++..+.|.+.+.. | +.++++||+|+|||+|++.++++.+ ++++++....
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~ 73 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHIT 73 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBC
T ss_pred ChHhcCChHHHHHHHHHHHhc----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCC
Confidence 345679999988888776641 1 4799999999999999999999876 6677664331
Q ss_pred -----hhhh--------------------hhh----HHHHHHHHHH----HHcCCCeEEEEcCCCccccCCccCCcccHH
Q 007190 240 -----EMFV--------------------GVG----ARRVRSLFQA----AKKKAPCIIFIDEIDAVGSTRKQWEGHTKK 286 (613)
Q Consensus 240 -----~~~~--------------------g~~----~~~vr~lf~~----A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~ 286 (613)
..+. +.. ...+..++.. +....|.+|+|||+|.+..... .....
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~---~~~~~ 150 (350)
T 2qen_A 74 REELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS---RGGKE 150 (350)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT---TTTHH
T ss_pred HHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc---cchhh
Confidence 1000 000 0112233322 2222389999999999843100 01123
Q ss_pred HHHHHHHHhhccccCCceEEEeecCCCC---------CCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCC-Ch
Q 007190 287 TLHQLLVEMDGFEQNEGIILMAATNLPD---------ILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLA-DD 356 (613)
Q Consensus 287 ~l~~LL~~ldg~~~~~~ViVIaaTN~p~---------~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~-~d 356 (613)
.+..|-..++.. .++.+|.++.... .....+. ||+...+.+++.+.++..++++..+...... ++
T Consensus 151 ~~~~L~~~~~~~---~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~ 225 (350)
T 2qen_A 151 LLALFAYAYDSL---PNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPE 225 (350)
T ss_dssp HHHHHHHHHHHC---TTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCH
T ss_pred HHHHHHHHHHhc---CCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 333333333321 2444444443221 1111222 4666789999999999999998877644332 34
Q ss_pred hcHHHHHhcCCCCCHHHHHHHHH
Q 007190 357 VDVKAIARGTPGFNGADLANLVN 379 (613)
Q Consensus 357 ~dl~~la~~t~G~sgadL~~lv~ 379 (613)
..+..+...+.|+ +.-+..++.
T Consensus 226 ~~~~~i~~~tgG~-P~~l~~~~~ 247 (350)
T 2qen_A 226 NEIEEAVELLDGI-PGWLVVFGV 247 (350)
T ss_dssp HHHHHHHHHHTTC-HHHHHHHHH
T ss_pred HHHHHHHHHhCCC-HHHHHHHHH
Confidence 4567788888774 555655554
No 101
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.86 E-value=4.1e-09 Score=109.55 Aligned_cols=101 Identities=21% Similarity=0.268 Sum_probs=61.7
Q ss_pred CCCCcccCCCHHH-HHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc----CCCeeEeecchhh
Q 007190 165 VKTFKDVKGCDDA-KQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGSEFE 239 (613)
Q Consensus 165 ~~~f~dV~G~~e~-k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~----~~pfi~is~s~~~ 239 (613)
..+|+++.+.+.. +..+..+..++... +...+.+++|+||||||||+||+++|.++ +.++++++++++.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~------~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~ 193 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQY------PSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHC------SCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhc------cccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH
Confidence 4689999875522 22233333333321 11135789999999999999999999855 4788889888876
Q ss_pred hhhhhhh-HHHHHHHHHHHHcCCCeEEEEcCCCcc
Q 007190 240 EMFVGVG-ARRVRSLFQAAKKKAPCIIFIDEIDAV 273 (613)
Q Consensus 240 ~~~~g~~-~~~vr~lf~~A~~~~P~ILfIDEiD~l 273 (613)
..+.... ......++.... .+.+|||||++..
T Consensus 194 ~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 194 IDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp HHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred HHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 5443211 111122233332 2459999999765
No 102
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.78 E-value=5.7e-09 Score=101.83 Aligned_cols=131 Identities=19% Similarity=0.282 Sum_probs=83.8
Q ss_pred CCceEEEEccCCChHHHHHHHHHHh--------cC-CCeeEeecchhhhhhh----------hh-----hHHHHHHHHHH
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGE--------AG-VPFFYRAGSEFEEMFV----------GV-----GARRVRSLFQA 256 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e--------~~-~pfi~is~s~~~~~~~----------g~-----~~~~vr~lf~~ 256 (613)
.+...|++|+||||||++|.+.+.. .| .+++..++.++..... .. ....+.+.+..
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 83 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKK 83 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTS
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhc
Confidence 4557899999999999999887543 34 7777777665532111 00 11222222211
Q ss_pred HHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccCCC
Q 007190 257 AKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPD 336 (613)
Q Consensus 257 A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd 336 (613)
....++||+|||++.+.+.+.... +.. .++..++. ....++-+|.+|+.++.|+.++++ |++.+++++.|.
T Consensus 84 -~~~~~~vliIDEAq~l~~~~~~~~-e~~----rll~~l~~-~r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~~ 154 (199)
T 2r2a_A 84 -PENIGSIVIVDEAQDVWPARSAGS-KIP----ENVQWLNT-HRHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASNK 154 (199)
T ss_dssp -GGGTTCEEEETTGGGTSBCCCTTC-CCC----HHHHGGGG-TTTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEECS
T ss_pred -cccCceEEEEEChhhhccCccccc-hhH----HHHHHHHh-cCcCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCcc
Confidence 234468999999999966542211 111 34555553 334556677788889999999987 999999998876
Q ss_pred HhhH
Q 007190 337 VRGR 340 (613)
Q Consensus 337 ~~~R 340 (613)
...+
T Consensus 155 ~~~~ 158 (199)
T 2r2a_A 155 MGMR 158 (199)
T ss_dssp SCCE
T ss_pred cCcc
Confidence 5443
No 103
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.70 E-value=1.5e-08 Score=108.32 Aligned_cols=119 Identities=16% Similarity=0.136 Sum_probs=78.6
Q ss_pred CCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCcccc-C
Q 007190 198 GGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGS-T 276 (613)
Q Consensus 198 g~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~-~ 276 (613)
+.+.+..++|+||||+|||++++++++..+..++.+...+-...+ .+..+ ...+++|+||++.+.. .
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~~~~------~lg~~------~q~~~~l~dd~~~~~~~~ 232 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNF------ELGVA------IDQFLVVFEDVKGTGGES 232 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHH------HHGGG------TTCSCEEETTCCCSTTTT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchhHHH------HHHHh------cchhHHHHHHHHHHHHHH
Confidence 666778899999999999999999999887776654433211010 11111 2335789999999865 2
Q ss_pred CccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCCCCChhhcCCCccceEEEccC
Q 007190 277 RKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPN 334 (613)
Q Consensus 277 r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~ 334 (613)
++...+........+...++| .+.|+.+||+++.+ +++.+|||++..+....
T Consensus 233 r~l~~~~~~~~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 233 RDLPSGQGINNLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTCCCCSHHHHHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred hhccccCcchHHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 221111111123444555554 35677889999999 79999999998776654
No 104
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.64 E-value=4.2e-07 Score=116.83 Aligned_cols=126 Identities=16% Similarity=0.158 Sum_probs=91.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG 282 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~ 282 (613)
.|+++.||||||||.+++++|+.+|.+++.++|++-.. .+.+..+|..+... ++.+++|||+.+..
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~-Gaw~~~DE~nr~~~------- 711 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQI-GAWGCFDEFNRLDE------- 711 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHH-TCEEEEETTTSSCH-------
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhc-CCEeeehhhhhcCh-------
Confidence 57999999999999999999999999999999987543 23456667666544 37999999998822
Q ss_pred ccHHHHHHHHHH----hhc-----------cccCCceEEEeecCC----CCCCChhhcCCCccceEEEccCCCHhhHHHH
Q 007190 283 HTKKTLHQLLVE----MDG-----------FEQNEGIILMAATNL----PDILDPALTRPGRFDRHIVVPNPDVRGRQEI 343 (613)
Q Consensus 283 ~~~~~l~~LL~~----ldg-----------~~~~~~ViVIaaTN~----p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~I 343 (613)
.....+++.+.. +.. +.-+..+.|++|.|. ...|++++++ || +.+.+..||.+...+|
T Consensus 712 evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~i~ei 788 (2695)
T 4akg_A 712 KVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSGTIAEM 788 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHHHHHHH
Confidence 233333333322 211 112345677888883 3579999998 89 7899999999888887
Q ss_pred HH
Q 007190 344 LE 345 (613)
Q Consensus 344 L~ 345 (613)
+-
T Consensus 789 ~l 790 (2695)
T 4akg_A 789 IL 790 (2695)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 105
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.57 E-value=9.3e-07 Score=92.48 Aligned_cols=175 Identities=17% Similarity=0.124 Sum_probs=115.8
Q ss_pred CCCceEEEEccCCChHHHHHHHHHHhc---CC-Ce--eEeecchhhhhhhhhhHHHHHHHHHHHH----cCCCeEEEEcC
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAGEA---GV-PF--FYRAGSEFEEMFVGVGARRVRSLFQAAK----KKAPCIIFIDE 269 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~e~---~~-pf--i~is~s~~~~~~~g~~~~~vr~lf~~A~----~~~P~ILfIDE 269 (613)
+.+...|||||+|+||+..++++++.+ +. ++ +.+++. ..++++++.+. -....|++|||
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~plf~~~kvvii~~ 84 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPN-----------TDWNAIFSLCQAMSLFASRQTLLLLL 84 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTT-----------CCHHHHHHHHHHHHHCCSCEEEEEEC
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCC-----------CCHHHHHHHhcCcCCccCCeEEEEEC
Confidence 355689999999999999999998865 22 22 222211 22344444433 23457999999
Q ss_pred CCc-cccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCC------CCCChhhcCCCccceEEEccCCCHhhHHH
Q 007190 270 IDA-VGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP------DILDPALTRPGRFDRHIVVPNPDVRGRQE 342 (613)
Q Consensus 270 iD~-l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p------~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~ 342 (613)
+|. +. ....+.|+..++.. ..++++|.+|+.+ ..+.+++.+ |+ ..+.+.+|+.++...
T Consensus 85 ~~~kl~----------~~~~~aLl~~le~p--~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~ 149 (343)
T 1jr3_D 85 PENGPN----------AAINEQLLTLTGLL--HDDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLPR 149 (343)
T ss_dssp CSSCCC----------TTHHHHHHHHHTTC--BTTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHHH
T ss_pred CCCCCC----------hHHHHHHHHHHhcC--CCCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHHH
Confidence 998 73 23566788878753 3334444344432 235567776 55 678999999999999
Q ss_pred HHHHHhccCCCC-ChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 007190 343 ILELYLQDKPLA-DDVDVKAIARGTPGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDR 404 (613)
Q Consensus 343 IL~~~l~~~~l~-~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A~~~ 404 (613)
.++..++..++. ++..+..++..+.| +.+++.+.++..+..+ +...||.++++..+..
T Consensus 150 ~l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~l~~---~~~~It~e~V~~~~~~ 208 (343)
T 1jr3_D 150 WVAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLSLLW---PDGKLTLPRVEQAVND 208 (343)
T ss_dssp HHHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHHHHC---TTCEECHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHHHhc---CCCCCCHHHHHHHHhh
Confidence 999998877654 34457778887765 6666666666655442 4558999999877654
No 106
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.53 E-value=1.3e-07 Score=118.10 Aligned_cols=112 Identities=15% Similarity=0.212 Sum_probs=80.2
Q ss_pred CCCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhh----hhhhh------------hhHHHHHHHHHHHHc
Q 007190 199 GKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFE----EMFVG------------VGARRVRSLFQAAKK 259 (613)
Q Consensus 199 ~~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~----~~~~g------------~~~~~vr~lf~~A~~ 259 (613)
...+++++|+||||||||+||.+++.++ |..+.+++..+.. ....| .+++.++.++..++.
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~ 1503 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1503 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhc
Confidence 5677899999999999999999998875 4556666655321 11122 234567777888888
Q ss_pred CCCeEEEEcCCCccccCCc---cC-C-cc--cHHHHHHHHHHhhccccCCceEEEeec
Q 007190 260 KAPCIIFIDEIDAVGSTRK---QW-E-GH--TKKTLHQLLVEMDGFEQNEGIILMAAT 310 (613)
Q Consensus 260 ~~P~ILfIDEiD~l~~~r~---~~-~-~~--~~~~l~~LL~~ldg~~~~~~ViVIaaT 310 (613)
.+|++|||||++.+.+.+. .. + .. ..+.++++|.+|.++....+++||.+.
T Consensus 1504 ~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tN 1561 (2050)
T 3cmu_A 1504 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1561 (2050)
T ss_dssp TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence 9999999999998876431 11 1 11 356778999999988777787777553
No 107
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.52 E-value=2.9e-07 Score=100.55 Aligned_cols=128 Identities=15% Similarity=0.202 Sum_probs=101.5
Q ss_pred CeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEee---------cC---CCCCCChhhcCCCccceE
Q 007190 262 PCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAA---------TN---LPDILDPALTRPGRFDRH 329 (613)
Q Consensus 262 P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaa---------TN---~p~~Ld~aLlRpgRFd~~ 329 (613)
|.|+||||+|.+ ....++.|+..|+.... .++++++ |+ .|..|+|.+++ ||..
T Consensus 296 ~~VliIDEa~~l----------~~~a~~aLlk~lEe~~~--~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~s--R~~~- 360 (456)
T 2c9o_A 296 PGVLFVDEVHML----------DIECFTYLHRALESSIA--PIVIFASNRGNCVIRGTEDITSPHGIPLDLLD--RVMI- 360 (456)
T ss_dssp ECEEEEESGGGC----------BHHHHHHHHHHTTSTTC--CEEEEEECCSEEECBTTSSCEEETTCCHHHHT--TEEE-
T ss_pred ceEEEEechhhc----------CHHHHHHHHHHhhccCC--CEEEEecCCccccccccccccccccCChhHHh--hcce-
Confidence 469999999999 35788999999995433 3555555 33 26789999998 9966
Q ss_pred EEccCCCHhhHHHHHHHHhccCCCC-ChhcHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Q 007190 330 IVVPNPDVRGRQEILELYLQDKPLA-DDVDVKAIARGT-PGFNGADLANLVNIAAIKAAVDGGEKLTATELEFAKDRI 405 (613)
Q Consensus 330 I~v~~Pd~~~R~~IL~~~l~~~~l~-~d~dl~~la~~t-~G~sgadL~~lv~~Aa~~A~~~~~~~It~~dl~~A~~~v 405 (613)
+.+++|+.++..++|+..+...... ++..+..+++.+ .| +++...++++.|...|..++...|+.+|+..|+..+
T Consensus 361 ~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 361 IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELF 437 (456)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHh
Confidence 6999999999999999887644332 344466777766 54 899999999999999999999999999999998654
No 108
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.47 E-value=4.6e-07 Score=117.15 Aligned_cols=136 Identities=18% Similarity=0.232 Sum_probs=87.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc-CCCeeEeecchhhhhhhhhhHHHHHHHHHHH----H------------cCCCeEE
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA-GVPFFYRAGSEFEEMFVGVGARRVRSLFQAA----K------------KKAPCII 265 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~-~~pfi~is~s~~~~~~~g~~~~~vr~lf~~A----~------------~~~P~IL 265 (613)
+++||+||||||||++++...... +.+++.++++.-.. +..+...+..- + .+..+|+
T Consensus 1305 ~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~Vl 1378 (3245)
T 3vkg_A 1305 RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVV 1378 (3245)
T ss_dssp CCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceEEE
Confidence 469999999999998776654443 66777888776433 22333333321 0 1223699
Q ss_pred EEcCCCccccCCccCCcccHHHHHHHHHHhhccc--------cCCceEEEeecCCC-----CCCChhhcCCCccceEEEc
Q 007190 266 FIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE--------QNEGIILMAATNLP-----DILDPALTRPGRFDRHIVV 332 (613)
Q Consensus 266 fIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~--------~~~~ViVIaaTN~p-----~~Ld~aLlRpgRFd~~I~v 332 (613)
||||++.-.... .+.......+.+++..- ++. .-.++.+|||+|.| ..|+++++| || ..+.+
T Consensus 1379 FiDDiNmp~~D~-yGtQ~~ielLrqlld~~-g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F-~vi~i 1453 (3245)
T 3vkg_A 1379 FCDEINLPSTDK-YGTQRVITFIRQMVEKG-GFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HA-PILLV 1453 (3245)
T ss_dssp EETTTTCCCCCT-TSCCHHHHHHHHHHHHS-EEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TC-CEEEC
T ss_pred EecccCCCCccc-cccccHHHHHHHHHHcC-CeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hc-eEEEe
Confidence 999998642211 11112334445554321 221 12458899999988 469999999 89 56999
Q ss_pred cCCCHhhHHHHHHHHhc
Q 007190 333 PNPDVRGRQEILELYLQ 349 (613)
Q Consensus 333 ~~Pd~~~R~~IL~~~l~ 349 (613)
+.|+.+....|+..++.
T Consensus 1454 ~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1454 DFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999877654
No 109
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.31 E-value=2.6e-07 Score=90.16 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=25.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCee
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAGVPFF 231 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~~pfi 231 (613)
+++|||||||||||++|.++|+.+...++
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 58999999999999999999999865443
No 110
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.14 E-value=1e-05 Score=77.06 Aligned_cols=27 Identities=44% Similarity=0.666 Sum_probs=23.6
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCe
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPF 230 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pf 230 (613)
.+.|.||+|+|||||++.+++..++.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 478999999999999999999876544
No 111
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.13 E-value=1e-05 Score=104.94 Aligned_cols=126 Identities=18% Similarity=0.205 Sum_probs=88.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhhhhhhhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG 282 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~ 282 (613)
.|..+.||+|||||.+++.+|+.+|.+++.++|++-.+. ..+..+|.-+... .+..++|||+.+-.
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~------~~~g~i~~G~~~~-GaW~cfDEfNrl~~------- 670 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL------QAMSRIFVGLCQC-GAWGCFDEFNRLEE------- 670 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH------HHHHHHHHHHHHH-TCEEEEETTTSSCH-------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH------HHHHHHHhhHhhc-CcEEEehhhhcCCH-------
Confidence 467899999999999999999999999999999874432 2344555555443 36899999998821
Q ss_pred ccHHHHHHHHHHh-------------h-c--cccCCceEEEeecCC----CCCCChhhcCCCccceEEEccCCCHhhHHH
Q 007190 283 HTKKTLHQLLVEM-------------D-G--FEQNEGIILMAATNL----PDILDPALTRPGRFDRHIVVPNPDVRGRQE 342 (613)
Q Consensus 283 ~~~~~l~~LL~~l-------------d-g--~~~~~~ViVIaaTN~----p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~ 342 (613)
..-.++.+.+..+ + | +.-+.++.|+.|.|. ...|+++|+. || +.|.++.||.+...+
T Consensus 671 ~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~~i~e 747 (3245)
T 3vkg_A 671 RILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDREMIAQ 747 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHHHHHH
Confidence 1222222222211 1 1 122345677888884 3589999998 89 779999999988877
Q ss_pred HHH
Q 007190 343 ILE 345 (613)
Q Consensus 343 IL~ 345 (613)
|+-
T Consensus 748 i~L 750 (3245)
T 3vkg_A 748 VML 750 (3245)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 112
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.09 E-value=6.6e-06 Score=83.50 Aligned_cols=26 Identities=42% Similarity=0.450 Sum_probs=23.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCC
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAGV 228 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~~ 228 (613)
++++||||||||||++|+++|+....
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 58999999999999999999997543
No 113
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.97 E-value=1.8e-05 Score=86.31 Aligned_cols=131 Identities=21% Similarity=0.294 Sum_probs=69.5
Q ss_pred ccccCCCCCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc---CC-CeeE
Q 007190 157 KEVMPEKNVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GV-PFFY 232 (613)
Q Consensus 157 ~~~~~~~~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~---~~-pfi~ 232 (613)
+++.|...+.+|+++ .++.++.+..+..++...+ ..++|.||||||||+++.+++..+ +. .++.
T Consensus 12 ~~~~~~~~p~~~~~L--n~~Q~~av~~~~~~i~~~~----------~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~ 79 (459)
T 3upu_A 12 SGLVPRGSHMTFDDL--TEGQKNAFNIVMKAIKEKK----------HHVTINGPAGTGATTLTKFIIEALISTGETGIIL 79 (459)
T ss_dssp ---------CCSSCC--CHHHHHHHHHHHHHHHSSS----------CEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEE
T ss_pred CCCccccCCCccccC--CHHHHHHHHHHHHHHhcCC----------CEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEE
Confidence 367778888899987 4455555666665554421 279999999999999999998865 33 4444
Q ss_pred eecchhhh----hhhhhhHHHHHHHHHHH----------------HcCCCeEEEEcCCCccccCCccCCcccHHHHHHHH
Q 007190 233 RAGSEFEE----MFVGVGARRVRSLFQAA----------------KKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLL 292 (613)
Q Consensus 233 is~s~~~~----~~~g~~~~~vr~lf~~A----------------~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL 292 (613)
+....-.. ...+.....+..++... ......+|+|||+..+ ....+..|+
T Consensus 80 ~a~T~~Aa~~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~----------~~~~~~~l~ 149 (459)
T 3upu_A 80 AAPTHAAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMY----------DRKLFKILL 149 (459)
T ss_dssp EESSHHHHHHHHHHHSSCEEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGC----------CHHHHHHHH
T ss_pred ecCcHHHHHHHHhhhccchhhHHHHhccCcccccccchhcccccccccCCCEEEEECchhC----------CHHHHHHHH
Confidence 43322111 01111112222333210 0112469999999877 234555555
Q ss_pred HHhhccccCCceEEEeecCC
Q 007190 293 VEMDGFEQNEGIILMAATNL 312 (613)
Q Consensus 293 ~~ldg~~~~~~ViVIaaTN~ 312 (613)
..+. ....++++|-.+.
T Consensus 150 ~~~~---~~~~~~~vGD~~Q 166 (459)
T 3upu_A 150 STIP---PWCTIIGIGDNKQ 166 (459)
T ss_dssp HHSC---TTCEEEEEECTTS
T ss_pred Hhcc---CCCEEEEECCHHH
Confidence 5543 4556777775543
No 114
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.95 E-value=2.8e-05 Score=75.08 Aligned_cols=37 Identities=22% Similarity=0.077 Sum_probs=30.5
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecch
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE 237 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~ 237 (613)
...-++|+||||+|||+|++.++...+.++++++...
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 3456899999999999999999986677788877654
No 115
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.93 E-value=2.4e-05 Score=75.85 Aligned_cols=35 Identities=37% Similarity=0.528 Sum_probs=27.0
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeec
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAG 235 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~ 235 (613)
....++|+||||+|||+|++.++... +.++++++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 34568999999999999999999653 456665553
No 116
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.86 E-value=4.5e-05 Score=80.96 Aligned_cols=110 Identities=18% Similarity=0.223 Sum_probs=64.7
Q ss_pred CCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhhh----hhh------------hHHHHHHHHHHHHcC
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMF----VGV------------GARRVRSLFQAAKKK 260 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~~----~g~------------~~~~vr~lf~~A~~~ 260 (613)
.....++|+||||+|||+||..++..+ +.++++++...-.... .|. ....+..+....+..
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~ 151 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSG 151 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTT
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcC
Confidence 344569999999999999999998764 6678877765321111 111 111222222233456
Q ss_pred CCeEEEEcCCCccccCCccC-C-c-----ccHHHHHHHHHHhhccccCCceEEEee
Q 007190 261 APCIIFIDEIDAVGSTRKQW-E-G-----HTKKTLHQLLVEMDGFEQNEGIILMAA 309 (613)
Q Consensus 261 ~P~ILfIDEiD~l~~~r~~~-~-~-----~~~~~l~~LL~~ldg~~~~~~ViVIaa 309 (613)
.+++|+||.+..+....... . + ...+.+.+++..|..+....++.||.+
T Consensus 152 ~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~ 207 (366)
T 1xp8_A 152 AIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFI 207 (366)
T ss_dssp CCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 78999999999997432110 0 1 112345666666655545556666654
No 117
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.84 E-value=0.00024 Score=79.39 Aligned_cols=174 Identities=13% Similarity=0.126 Sum_probs=94.6
Q ss_pred CCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc-------CCCeeEeecchh-
Q 007190 167 TFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA-------GVPFFYRAGSEF- 238 (613)
Q Consensus 167 ~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~-------~~pfi~is~s~~- 238 (613)
.-..++|.++..+.|.+.+.. . ...++-++|+||+|+|||+||+.+++.. ....+.++.+..
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~---~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~ 191 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSK---L-------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD 191 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTT---S-------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCC
T ss_pred CCCeecccHHHHHHHHHHHhc---c-------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCc
Confidence 345679999988777766531 1 1234579999999999999999997532 112344433221
Q ss_pred ----hhhhh------h----------hhHHHHHH-HHHHHHc-CCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhh
Q 007190 239 ----EEMFV------G----------VGARRVRS-LFQAAKK-KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMD 296 (613)
Q Consensus 239 ----~~~~~------g----------~~~~~vr~-lf~~A~~-~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ld 296 (613)
...+. + .....+.. +...... ..|.+|+||+++.. . .+ +
T Consensus 192 ~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~------------~----~l---~ 252 (591)
T 1z6t_A 192 KSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS------------W----VL---K 252 (591)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH------------H----HH---H
T ss_pred hHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH------------H----HH---H
Confidence 11110 0 00111122 2222222 36899999999753 1 12 2
Q ss_pred ccccCCceEEEeecCCCCCCChhhcCCCccceEEEc---cCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHH
Q 007190 297 GFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVV---PNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGAD 373 (613)
Q Consensus 297 g~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v---~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgad 373 (613)
.+. .+..||.||..+..... .. + ..+.+ +..+.++-.++|..++.............|++.+.|. |-.
T Consensus 253 ~l~--~~~~ilvTsR~~~~~~~--~~-~---~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~-PLa 323 (591)
T 1z6t_A 253 AFD--SQCQILLTTRDKSVTDS--VM-G---PKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGS-PLV 323 (591)
T ss_dssp TTC--SSCEEEEEESCGGGGTT--CC-S---CEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTC-HHH
T ss_pred Hhc--CCCeEEEECCCcHHHHh--cC-C---CceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCC-cHH
Confidence 222 34455666664432111 11 1 22333 4678888889998887542211233467888888875 544
Q ss_pred HHHHH
Q 007190 374 LANLV 378 (613)
Q Consensus 374 L~~lv 378 (613)
|..+.
T Consensus 324 l~~~a 328 (591)
T 1z6t_A 324 VSLIG 328 (591)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 118
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.82 E-value=4.6e-05 Score=74.73 Aligned_cols=75 Identities=13% Similarity=0.065 Sum_probs=48.5
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc---------CCCeeEeecchh------hhh--hhhh------------------
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEA---------GVPFFYRAGSEF------EEM--FVGV------------------ 245 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~---------~~pfi~is~s~~------~~~--~~g~------------------ 245 (613)
...-++|+||||+|||+|++.++... +...++++...- ... ..+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 34568999999999999999999852 345777766541 100 0010
Q ss_pred -hHHHHHHHHHHHHcCCCeEEEEcCCCcccc
Q 007190 246 -GARRVRSLFQAAKKKAPCIIFIDEIDAVGS 275 (613)
Q Consensus 246 -~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~ 275 (613)
....+..+........|.+|+|||+..+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 001123344445556799999999998854
No 119
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.76 E-value=0.00044 Score=83.30 Aligned_cols=175 Identities=11% Similarity=0.115 Sum_probs=100.6
Q ss_pred CCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc---C--C--CeeEeecchh
Q 007190 166 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---G--V--PFFYRAGSEF 238 (613)
Q Consensus 166 ~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~---~--~--pfi~is~s~~ 238 (613)
..-.+++|.++..++|.+.+... ...++-+.|+|++|+|||+||+.+++.. . . .++.++.+..
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~ 190 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKL----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ 190 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTT----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSC
T ss_pred CCCceeccHHHHHHHHHHHHhhc----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCc
Confidence 34556899999888877765311 1234568999999999999999998752 1 1 2334443321
Q ss_pred -----hhhh------hh----------hhHHHHHHHHHHHHcC--CCeEEEEcCCCccccCCccCCcccHHHHHHHHHHh
Q 007190 239 -----EEMF------VG----------VGARRVRSLFQAAKKK--APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEM 295 (613)
Q Consensus 239 -----~~~~------~g----------~~~~~vr~lf~~A~~~--~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~l 295 (613)
.... .+ .....+...+...... .+.+|+||+++.. . .+
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~------------~-------~~ 251 (1249)
T 3sfz_A 191 DKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP------------W-------VL 251 (1249)
T ss_dssp CHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH------------H-------HH
T ss_pred CchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH------------H-------HH
Confidence 1000 00 0112223333332232 3789999999854 1 12
Q ss_pred hccccCCceEEEeecCCCCCCChhhcCCCccceEEEccC-CCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHH
Q 007190 296 DGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPN-PDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADL 374 (613)
Q Consensus 296 dg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~-Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL 374 (613)
+.+. .+..||.||..+...... . .-...+.++. .+.++-.++|..+..............|++.+.|. |-.|
T Consensus 252 ~~~~--~~~~ilvTtR~~~~~~~~-~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~gl-PLal 324 (1249)
T 3sfz_A 252 KAFD--NQCQILLTTRDKSVTDSV-M---GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGS-PLVV 324 (1249)
T ss_dssp TTTC--SSCEEEEEESSTTTTTTC-C---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTC-HHHH
T ss_pred Hhhc--CCCEEEEEcCCHHHHHhh-c---CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCC-HHHH
Confidence 2232 334566677765433211 1 1235677775 78888889998887544333333467899999875 4444
Q ss_pred HH
Q 007190 375 AN 376 (613)
Q Consensus 375 ~~ 376 (613)
+.
T Consensus 325 ~~ 326 (1249)
T 3sfz_A 325 SL 326 (1249)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 120
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.75 E-value=4.3e-05 Score=80.62 Aligned_cols=75 Identities=23% Similarity=0.200 Sum_probs=48.5
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhh----hhhh------------hHHHHHHHHHHHHcCC
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM----FVGV------------GARRVRSLFQAAKKKA 261 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~----~~g~------------~~~~vr~lf~~A~~~~ 261 (613)
...-++|+||||+|||+||..++..+ +.++++++...-... ..|. ....+..+...++...
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~ 139 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGA 139 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCC
Confidence 33559999999999999999998754 567777765432111 1111 1112222223344567
Q ss_pred CeEEEEcCCCcccc
Q 007190 262 PCIIFIDEIDAVGS 275 (613)
Q Consensus 262 P~ILfIDEiD~l~~ 275 (613)
|.+|+||++..+..
T Consensus 140 ~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 140 LDIIVIDSVAALVP 153 (349)
T ss_dssp CSEEEEECGGGCCC
T ss_pred CCEEEEcChHhhcc
Confidence 99999999999964
No 121
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.74 E-value=6.4e-05 Score=70.29 Aligned_cols=39 Identities=18% Similarity=0.319 Sum_probs=33.4
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhh
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 240 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~ 240 (613)
|+.++|+||||+|||+++++++..++.+++.++...+..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~ 41 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIE 41 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhh
Confidence 467999999999999999999999999998877655533
No 122
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.74 E-value=7.5e-05 Score=78.95 Aligned_cols=108 Identities=17% Similarity=0.192 Sum_probs=64.4
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhh----hhh------------hhHHHHHHHHHHHHcCCC
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM----FVG------------VGARRVRSLFQAAKKKAP 262 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~----~~g------------~~~~~vr~lf~~A~~~~P 262 (613)
..-++|+||||+|||+|+..++..+ +.++++++....... -.| .....+..+....+...|
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~ 140 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVV 140 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCC
Confidence 3458999999999999999998864 667778876542110 001 011222222223345778
Q ss_pred eEEEEcCCCccccCCc--cCCc-----ccHHHHHHHHHHhhccccCCceEEEee
Q 007190 263 CIIFIDEIDAVGSTRK--QWEG-----HTKKTLHQLLVEMDGFEQNEGIILMAA 309 (613)
Q Consensus 263 ~ILfIDEiD~l~~~r~--~~~~-----~~~~~l~~LL~~ldg~~~~~~ViVIaa 309 (613)
.+++||.+..+.+... ...+ ...+.+.+++..|..+....++.||.+
T Consensus 141 dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~i 194 (356)
T 3hr8_A 141 DLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFT 194 (356)
T ss_dssp SEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEE
T ss_pred CeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 9999999998865211 0011 123556677766666555555555544
No 123
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.71 E-value=4.1e-05 Score=79.72 Aligned_cols=110 Identities=15% Similarity=0.148 Sum_probs=65.0
Q ss_pred CCCceEEEEccCCChHHHHHHHHHHhc---------CCCeeEeecchh--hhh---h---hhh----------------h
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAGEA---------GVPFFYRAGSEF--EEM---F---VGV----------------G 246 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~e~---------~~pfi~is~s~~--~~~---~---~g~----------------~ 246 (613)
....-++|+||||+|||+||..+|..+ +.++++++...- .+. + .|. .
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCCH
Confidence 334568999999999999999999875 456777776542 110 0 000 0
Q ss_pred H---HHHHHHHHHHHc-CCCeEEEEcCCCccccCCccCCc---ccHHHHHHHHHHhhccccCCceEEEee
Q 007190 247 A---RRVRSLFQAAKK-KAPCIIFIDEIDAVGSTRKQWEG---HTKKTLHQLLVEMDGFEQNEGIILMAA 309 (613)
Q Consensus 247 ~---~~vr~lf~~A~~-~~P~ILfIDEiD~l~~~r~~~~~---~~~~~l~~LL~~ldg~~~~~~ViVIaa 309 (613)
. ..+..+....+. ..+.+|+||.+..+........+ ...+.+.+++..+..+....++.||.+
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~ 254 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIIT 254 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 1 123334444555 67899999999998632111001 112345666666665544445555554
No 124
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.66 E-value=5.9e-05 Score=94.51 Aligned_cols=113 Identities=16% Similarity=0.216 Sum_probs=69.6
Q ss_pred CCCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhhhh----h------------hhHHHHHHHHHHHHc
Q 007190 199 GKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMFV----G------------VGARRVRSLFQAAKK 259 (613)
Q Consensus 199 ~~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~~~----g------------~~~~~vr~lf~~A~~ 259 (613)
...+..++|+||||||||+||.+++.++ |.+.++++..+..+... | .++...+-.....+.
T Consensus 1078 i~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~~ 1157 (2050)
T 3cmu_A 1078 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1157 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHHh
Confidence 4556789999999999999999997754 77888888776533222 1 011223333344556
Q ss_pred CCCeEEEEcCCCccccCCccC---C----cccHHHHHHHHHHhhccccCCceEEEeecC
Q 007190 260 KAPCIIFIDEIDAVGSTRKQW---E----GHTKKTLHQLLVEMDGFEQNEGIILMAATN 311 (613)
Q Consensus 260 ~~P~ILfIDEiD~l~~~r~~~---~----~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN 311 (613)
.+|++|+||++.++....... . +-..+.+.+++..+.++....++++|.+..
T Consensus 1158 ~~~dlvVIDsl~~L~~~~e~~~~~g~~~~gl~aR~~~~~L~~L~~~l~e~~stiI~tN~ 1216 (2050)
T 3cmu_A 1158 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 1216 (2050)
T ss_dssp TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred CCCCEEEECCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence 779999999999995433211 0 112334445555544444445566665443
No 125
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.61 E-value=8.8e-05 Score=78.46 Aligned_cols=110 Identities=16% Similarity=0.234 Sum_probs=63.0
Q ss_pred CCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhh----hhhh-----------hHHHHHHHHH-HHHcC
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM----FVGV-----------GARRVRSLFQ-AAKKK 260 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~----~~g~-----------~~~~vr~lf~-~A~~~ 260 (613)
.....++|+||||+|||+||..++..+ +.++++++...-.+. -.|. ....+..+.. ..+..
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~ 140 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSG 140 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhcc
Confidence 344569999999999999999998754 667888876432111 0111 1122233333 23456
Q ss_pred CCeEEEEcCCCccccCCcc--CCc-----ccHHHHHHHHHHhhccccCCceEEEee
Q 007190 261 APCIIFIDEIDAVGSTRKQ--WEG-----HTKKTLHQLLVEMDGFEQNEGIILMAA 309 (613)
Q Consensus 261 ~P~ILfIDEiD~l~~~r~~--~~~-----~~~~~l~~LL~~ldg~~~~~~ViVIaa 309 (613)
.+.+|+||.+..+.....- ..+ ...+.+.+++..+..+....++.||.+
T Consensus 141 ~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~ 196 (356)
T 1u94_A 141 AVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 196 (356)
T ss_dssp CCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 7899999999998642210 000 111244555555554434445566644
No 126
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.60 E-value=0.00026 Score=69.54 Aligned_cols=127 Identities=23% Similarity=0.253 Sum_probs=67.4
Q ss_pred CCceEEEEccCCChHHHHHHHHH--Hh--cCCCeeEeecchhhhhh------hh--------------------------
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIA--GE--AGVPFFYRAGSEFEEMF------VG-------------------------- 244 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA--~e--~~~pfi~is~s~~~~~~------~g-------------------------- 244 (613)
...-+.|.||+|+|||+|++.++ .. .+...++++........ .+
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGLPS 108 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC----------
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEcccccccccc
Confidence 34568999999999999999998 32 34445554432211100 00
Q ss_pred ----------hhHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCC
Q 007190 245 ----------VGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD 314 (613)
Q Consensus 245 ----------~~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~ 314 (613)
........+........|.+|+|||.-++..... ......+.+..++..+.. .++.||.+|...+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~-d~~~~~~~l~~l~~~l~~----~g~tii~vtH~~~ 183 (251)
T 2ehv_A 109 EEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE-EERKIREVLLKLNTILLE----MGVTTILTTEAPD 183 (251)
T ss_dssp ---------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS-SGGGHHHHHHHHHHHHHH----HCCEEEEEECCC-
T ss_pred ccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC-CHHHHHHHHHHHHHHHHH----CCCeEEEEECCCC
Confidence 0011223333344557899999999987753211 011234446666666542 2455666666554
Q ss_pred CCC-----hhhcCCCcc-ceEEEccC
Q 007190 315 ILD-----PALTRPGRF-DRHIVVPN 334 (613)
Q Consensus 315 ~Ld-----~aLlRpgRF-d~~I~v~~ 334 (613)
... +.+.. -+ |+.+.+..
T Consensus 184 ~~~~~~~~~~i~~--~~aD~vi~l~~ 207 (251)
T 2ehv_A 184 PQHGKLSRYGIEE--FIARGVIVLDL 207 (251)
T ss_dssp ---CCSSSSSCGG--GGCSEEEEEEE
T ss_pred CCcccccccChhh--EeeeEEEEEee
Confidence 431 12222 45 77776653
No 127
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.56 E-value=0.00056 Score=74.23 Aligned_cols=151 Identities=21% Similarity=0.250 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcc--cHHHHHHHHHHhhccc--------cCCceEEEeec----CCC
Q 007190 248 RRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGH--TKKTLHQLLVEMDGFE--------QNEGIILMAAT----NLP 313 (613)
Q Consensus 248 ~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~--~~~~l~~LL~~ldg~~--------~~~~ViVIaaT----N~p 313 (613)
...++....|..+ .|+|+||||.++.+.+...+. ..-+.+.||..|++.. ..++|++|||. +.|
T Consensus 239 ~~~~~ai~~ae~~--~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~ 316 (444)
T 1g41_A 239 ELKQKAIDAVEQN--GIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARP 316 (444)
T ss_dssp HHHHHHHHHHHHH--CEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCG
T ss_pred HHHHHHHHHhccC--CeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCCh
Confidence 3445555555333 399999999998764422222 2336678999999731 34678999887 234
Q ss_pred CCCChhhcCCCccceEEEccCCCHhhHHHHHH---HHh-----c-----cCCCC-ChhcHHHHHh-------cCCCCCHH
Q 007190 314 DILDPALTRPGRFDRHIVVPNPDVRGRQEILE---LYL-----Q-----DKPLA-DDVDVKAIAR-------GTPGFNGA 372 (613)
Q Consensus 314 ~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~---~~l-----~-----~~~l~-~d~dl~~la~-------~t~G~sga 372 (613)
..+-|.|+. ||..++.++.++.++..+|+. .++ + +..+. .+..+..|++ .|...-.+
T Consensus 317 ~dlipel~~--R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR 394 (444)
T 1g41_A 317 SDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGAR 394 (444)
T ss_dssp GGSCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGG
T ss_pred hhcchHHhc--ccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCch
Confidence 445578886 999999999999999999983 211 1 11111 2333555554 23444456
Q ss_pred HHHHHHHHHHHHHHHhC----C--CccCHHHHHHHH
Q 007190 373 DLANLVNIAAIKAAVDG----G--EKLTATELEFAK 402 (613)
Q Consensus 373 dL~~lv~~Aa~~A~~~~----~--~~It~~dl~~A~ 402 (613)
.|++++......+..+- . -.||.+.+...+
T Consensus 395 ~L~~~ie~~~~~~~~~~~~~~~~~~~i~~~~v~~~l 430 (444)
T 1g41_A 395 RLHTVMERLMDKISFSASDMNGQTVNIDAAYVADAL 430 (444)
T ss_dssp HHHHHHHHHHHHHHHHGGGCTTCEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccCCCeEEEeHHHHHHhc
Confidence 66666655554444331 1 136666665443
No 128
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.54 E-value=0.00015 Score=76.05 Aligned_cols=109 Identities=16% Similarity=0.165 Sum_probs=62.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---------CCCeeEeecchh--hh----hh--hhh----------------hH--
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA---------GVPFFYRAGSEF--EE----MF--VGV----------------GA-- 247 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~---------~~pfi~is~s~~--~~----~~--~g~----------------~~-- 247 (613)
.-++|+||||+|||+||..+|..+ +.+.++++...- .+ .. .|. ..
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~~e~~ 202 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQ 202 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSTTHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCCHHHH
Confidence 458899999999999999999863 456777776542 11 00 000 01
Q ss_pred -HHHHHHHHHHHc--CCCeEEEEcCCCccccCCccCCcc---cHHHHHHHHHHhhccccCCceEEEeecC
Q 007190 248 -RRVRSLFQAAKK--KAPCIIFIDEIDAVGSTRKQWEGH---TKKTLHQLLVEMDGFEQNEGIILMAATN 311 (613)
Q Consensus 248 -~~vr~lf~~A~~--~~P~ILfIDEiD~l~~~r~~~~~~---~~~~l~~LL~~ldg~~~~~~ViVIaaTN 311 (613)
..+..+....+. ..+.+|+||.+..+....-...+. ..+.+.+++..+..+....++.||.++.
T Consensus 203 ~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq 272 (343)
T 1v5w_A 203 MELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQ 272 (343)
T ss_dssp HHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEee
Confidence 112223344455 678999999999986431110011 1234566666665554444555555443
No 129
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.53 E-value=0.00028 Score=72.23 Aligned_cols=60 Identities=28% Similarity=0.355 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchh
Q 007190 175 DDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 238 (613)
Q Consensus 175 ~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~ 238 (613)
++..+.+.+++..+... ......|..++|+||||+||||+++.++.+.+..++.+++..+
T Consensus 10 ~~~~~~~~~~~~~~l~~----~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQG----KKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp HHHHHHHHHHHHHHHTT----CCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred HHHHHHHHHHHHHHhcc----ccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 44555555555543221 1234567889999999999999999999988656677776554
No 130
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.51 E-value=0.00023 Score=73.89 Aligned_cols=111 Identities=14% Similarity=0.238 Sum_probs=62.2
Q ss_pred CCCCceEEEEccCCChHHHHHHHHHHhc-----CCCeeEeecchhhh-hh---hhh-----------hHHHH-HHHHHH-
Q 007190 199 GKLPKGILLTGAPGTGKTLLAKAIAGEA-----GVPFFYRAGSEFEE-MF---VGV-----------GARRV-RSLFQA- 256 (613)
Q Consensus 199 ~~~p~gvLL~GPpGTGKT~LAralA~e~-----~~pfi~is~s~~~~-~~---~g~-----------~~~~v-r~lf~~- 256 (613)
+-++.-++++||||+|||+|+-.++.++ +..+++++..+-.. .+ .|. ....+ -.+.+.
T Consensus 25 Gl~~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 25 GMQSGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp CBCSEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred CCcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 3333346899999999999988776543 56788887654211 10 111 11111 222222
Q ss_pred --HHcCCCeEEEEcCCCccccCCc---cCC----c--ccHHHHHHHHHHhhccccCCceEEEee
Q 007190 257 --AKKKAPCIIFIDEIDAVGSTRK---QWE----G--HTKKTLHQLLVEMDGFEQNEGIILMAA 309 (613)
Q Consensus 257 --A~~~~P~ILfIDEiD~l~~~r~---~~~----~--~~~~~l~~LL~~ldg~~~~~~ViVIaa 309 (613)
.+...|.+|+||-|.++.++.. ... + ...+.+++.|..|.++-...++.+|.+
T Consensus 105 ~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~t 168 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAI 168 (333)
T ss_dssp HTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 2556899999999999975321 110 1 123455666666555544455555543
No 131
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.48 E-value=0.00031 Score=70.26 Aligned_cols=40 Identities=33% Similarity=0.439 Sum_probs=34.5
Q ss_pred CCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchh
Q 007190 199 GKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 238 (613)
Q Consensus 199 ~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~ 238 (613)
...|..++|.||||+|||++++.+++.++.+++.+++..+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 4567789999999999999999999999877777777665
No 132
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.46 E-value=0.00013 Score=70.78 Aligned_cols=26 Identities=31% Similarity=0.245 Sum_probs=22.2
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
...-+.|+||+|+|||+|++.++...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 33458999999999999999999854
No 133
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.45 E-value=7.1e-05 Score=70.52 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=29.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCeeEe
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 233 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~~~pfi~i 233 (613)
++.++|+||||+|||++++.+|..++.+|+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 56899999999999999999999999998754
No 134
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.42 E-value=5.4e-05 Score=72.43 Aligned_cols=31 Identities=19% Similarity=-0.010 Sum_probs=22.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCeeEe
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYR 233 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~---~~pfi~i 233 (613)
+-.+++||||+|||+++..++.++ +.+++.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 357899999999999996666543 5554443
No 135
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.40 E-value=0.00031 Score=68.79 Aligned_cols=37 Identities=35% Similarity=0.527 Sum_probs=27.8
Q ss_pred CCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecc
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGS 236 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s 236 (613)
....-++|+||||+|||+++..++... +.++++++..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 334568999999999999998887643 5667766653
No 136
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.37 E-value=0.00011 Score=69.39 Aligned_cols=34 Identities=38% Similarity=0.585 Sum_probs=29.9
Q ss_pred CCCCceEEEEccCCChHHHHHHHHHHhcCCCeeE
Q 007190 199 GKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFY 232 (613)
Q Consensus 199 ~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~ 232 (613)
...|.-++|.|+||+||||+++.++..++.+++.
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 3456789999999999999999999999988765
No 137
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.37 E-value=0.0018 Score=64.05 Aligned_cols=162 Identities=21% Similarity=0.284 Sum_probs=82.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecch--------hhhhhh----------hh--hHHHHHHHHHHHHc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSE--------FEEMFV----------GV--GARRVRSLFQAAKK 259 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~--------~~~~~~----------g~--~~~~vr~lf~~A~~ 259 (613)
..+++.|+||+|||+++-.+|..+ |..++.++... +..... +. .+..+..++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~---- 82 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLK---- 82 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHH----
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHh----
Confidence 369999999999999999998764 66655444321 111100 00 1122333222
Q ss_pred CCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCC------------------CCCChhhc
Q 007190 260 KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLP------------------DILDPALT 321 (613)
Q Consensus 260 ~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p------------------~~Ld~aLl 321 (613)
..|.+++|||+-...... ......-+-+..++ ..++=+++|+|.- +.++..+.
T Consensus 83 ~~pdlvIVDElG~~~~~~-~r~~~~~qDV~~~l--------~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~ 153 (228)
T 2r8r_A 83 AAPSLVLVDELAHTNAPG-SRHTKRWQDIQELL--------AAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVL 153 (228)
T ss_dssp HCCSEEEESCTTCBCCTT-CSSSBHHHHHHHHH--------HTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHH
T ss_pred cCCCEEEEeCCCCCCccc-chhHHHHHHHHHHH--------cCCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHH
Confidence 358899999987652211 11111112222211 2344566666621 34555555
Q ss_pred CCCccceEEEccCCCHhhHHHHHHHHhccCCCCChhcHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 007190 322 RPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDVDVKAIARGTPGFNGADLANLVNIAAIKAA 386 (613)
Q Consensus 322 RpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~dl~~la~~t~G~sgadL~~lv~~Aa~~A~ 386 (613)
. +.|....++.|..+ +++..........+..-..+.. -|+...|..|-.-|...++
T Consensus 154 ~--~a~~v~lvD~~p~~----l~~rl~~g~vy~~~~~~~a~~~---~f~~~nl~~lrelal~~~a 209 (228)
T 2r8r_A 154 Q--EAFDLVLIDLPPRE----LLERLRDGKVYVPEQARAAIDA---FFTQTNLTALREMAMQTAA 209 (228)
T ss_dssp H--TCSEEEEBCCCHHH----HHHHHHTTCCCCTTCCHHHHHH---HCCHHHHHHHHHHHHHHHH
T ss_pred h--hCCeEEEecCCHHH----HHHHHHCCCccChhHHHHHHHh---hhchhhHHHHHHHHHHHHH
Confidence 5 56778888877755 3333333332222221112221 2777777766654554443
No 138
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.36 E-value=0.00035 Score=73.60 Aligned_cols=38 Identities=21% Similarity=0.167 Sum_probs=29.2
Q ss_pred CCCceEEEEccCCChHHHHHHHHHHhcC---------CCeeEeecch
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAGEAG---------VPFFYRAGSE 237 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~e~~---------~pfi~is~s~ 237 (613)
....-+.|+||||+|||+|++.++.... ...++++..+
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 3345688999999999999999998762 3557776643
No 139
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.35 E-value=0.00034 Score=75.11 Aligned_cols=111 Identities=16% Similarity=0.161 Sum_probs=60.4
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc---------CCCeeEeecchh-hh-------hhhhh------------------
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEA---------GVPFFYRAGSEF-EE-------MFVGV------------------ 245 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~---------~~pfi~is~s~~-~~-------~~~g~------------------ 245 (613)
...-++|+||||+|||+|++.++-.. +...++++..+. .. ...|.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCChH
Confidence 33458999999999999999776433 234677766541 00 00110
Q ss_pred -hHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCc---ccHHHHHHHHHHhhccccCCceEEEeecC
Q 007190 246 -GARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEG---HTKKTLHQLLVEMDGFEQNEGIILMAATN 311 (613)
Q Consensus 246 -~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~---~~~~~l~~LL~~ldg~~~~~~ViVIaaTN 311 (613)
....+..+........|.+|+||++-.+....-...+ ...+.+.+++..+..+....++.||.++.
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~H 326 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQ 326 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 0112223333444567999999999887643211111 12334455555555554444555555544
No 140
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.33 E-value=0.00063 Score=68.79 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=21.5
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
..-++|+||||+|||+|++.++..+
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999998643
No 141
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.33 E-value=0.00018 Score=74.49 Aligned_cols=109 Identities=12% Similarity=0.158 Sum_probs=63.0
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc---------------C----CCeeEeecchh--hhh---h---hhh--------
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEA---------------G----VPFFYRAGSEF--EEM---F---VGV-------- 245 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~---------------~----~pfi~is~s~~--~~~---~---~g~-------- 245 (613)
...-++|+||||+|||+||..+|..+ | .++++++...- .+. + .|.
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~~~~ 176 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDN 176 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhcC
Confidence 34568999999999999999998753 2 46777776542 110 0 010
Q ss_pred --------hH---HHHHHHHHHHHc-CCCeEEEEcCCCccccCCccCCc---ccHHHHHHHHHHhhccccCCceEEEee
Q 007190 246 --------GA---RRVRSLFQAAKK-KAPCIIFIDEIDAVGSTRKQWEG---HTKKTLHQLLVEMDGFEQNEGIILMAA 309 (613)
Q Consensus 246 --------~~---~~vr~lf~~A~~-~~P~ILfIDEiD~l~~~r~~~~~---~~~~~l~~LL~~ldg~~~~~~ViVIaa 309 (613)
.. ..+..+....+. ..+.+|+||.+..+........+ ...+.+.+++..+..+....++.||.+
T Consensus 177 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~ 255 (322)
T 2i1q_A 177 TFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVT 255 (322)
T ss_dssp EEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 00 112233344455 66889999999998532111001 112345666666665544455555554
No 142
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.31 E-value=0.00036 Score=68.92 Aligned_cols=70 Identities=16% Similarity=0.093 Sum_probs=43.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecch-------hhhhhhhhh-----HHHHHHHHHHHHc----CCCe
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSE-------FEEMFVGVG-----ARRVRSLFQAAKK----KAPC 263 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~-------~~~~~~g~~-----~~~vr~lf~~A~~----~~P~ 263 (613)
.-++++||||+|||+++..++.++ +..++.++... +.+. .|.. .....+++..++. ..+.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~d 91 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETK 91 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCC
Confidence 357889999999999998887765 55666553222 1110 1110 0112356666654 3578
Q ss_pred EEEEcCCCcc
Q 007190 264 IIFIDEIDAV 273 (613)
Q Consensus 264 ILfIDEiD~l 273 (613)
+|+|||++.+
T Consensus 92 vViIDEaQ~l 101 (223)
T 2b8t_A 92 VIGIDEVQFF 101 (223)
T ss_dssp EEEECSGGGS
T ss_pred EEEEecCccC
Confidence 9999999886
No 143
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.30 E-value=0.00013 Score=69.93 Aligned_cols=33 Identities=45% Similarity=0.539 Sum_probs=29.3
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcCCCeeEe
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 233 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~i 233 (613)
.++.++|+||||+|||++++.+|+.++.+++..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 345799999999999999999999999988754
No 144
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.28 E-value=0.0008 Score=73.23 Aligned_cols=37 Identities=22% Similarity=0.141 Sum_probs=28.7
Q ss_pred CCCCceEEEEccCCChHHHHHHHHHHhc----CCCeeEeec
Q 007190 199 GKLPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAG 235 (613)
Q Consensus 199 ~~~p~gvLL~GPpGTGKT~LAralA~e~----~~pfi~is~ 235 (613)
..+..-++|.|+||+|||+|+..+|..+ |.++++++.
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 3344568999999999999999998753 567777664
No 145
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.26 E-value=0.00046 Score=67.61 Aligned_cols=37 Identities=32% Similarity=0.367 Sum_probs=27.7
Q ss_pred CCCceEEEEccCCChHHHHHHHHHHh----cCCCeeEeecc
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAGE----AGVPFFYRAGS 236 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~e----~~~pfi~is~s 236 (613)
.+..-++++|+||+|||+||..+|.. .+.++++++..
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 33446899999999999999887643 36777777643
No 146
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.23 E-value=0.0042 Score=69.06 Aligned_cols=165 Identities=12% Similarity=0.145 Sum_probs=90.6
Q ss_pred CCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHH----hcCCC-----eeEeecc---hhh
Q 007190 172 KGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAG----EAGVP-----FFYRAGS---EFE 239 (613)
Q Consensus 172 ~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~----e~~~p-----fi~is~s---~~~ 239 (613)
+|.++.+++|.+.+..- +...++.+.++|++|+|||+||+.+++ ..... ++.++.. +..
T Consensus 131 ~GR~~~~~~l~~~L~~~---------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 201 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM---------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTF 201 (549)
T ss_dssp CCCHHHHHHHHHHHHHH---------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHH
T ss_pred CCchHHHHHHHHHHhcc---------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHH
Confidence 49999888887766321 122346789999999999999999997 23222 2333322 111
Q ss_pred h---hh---hhhh-------------HHHHHHHHHHHHcC-CCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccc
Q 007190 240 E---MF---VGVG-------------ARRVRSLFQAAKKK-APCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFE 299 (613)
Q Consensus 240 ~---~~---~g~~-------------~~~vr~lf~~A~~~-~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~ 299 (613)
. .. .+.. ...+...+...-.. .+++|+||+++.. .+. .+. .
T Consensus 202 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~-----------~~~--~~~----~-- 262 (549)
T 2a5y_B 202 DLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE-----------ETI--RWA----Q-- 262 (549)
T ss_dssp HHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCH-----------HHH--HHH----H--
T ss_pred HHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCc-----------hhh--ccc----c--
Confidence 1 00 0100 01122333333334 3799999999764 111 111 1
Q ss_pred cCCceEEEeecCCCCCCChhhcCCCccceEEEccCCCHhhHHHHHHHHhccCCCCChh--cHHHHHhcCCCC
Q 007190 300 QNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPLADDV--DVKAIARGTPGF 369 (613)
Q Consensus 300 ~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I~v~~Pd~~~R~~IL~~~l~~~~l~~d~--dl~~la~~t~G~ 369 (613)
..+..||.||....... .. +..+..+.++..+.++-.++|..+.......++. ....|++.+.|.
T Consensus 263 -~~gs~ilvTTR~~~v~~-~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~Gl 329 (549)
T 2a5y_B 263 -ELRLRCLVTTRDVEISN-AA---SQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGN 329 (549)
T ss_dssp -HTTCEEEEEESBGGGGG-GC---CSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTC
T ss_pred -cCCCEEEEEcCCHHHHH-Hc---CCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCC
Confidence 13445666776432211 11 1133578899999999999999885433221111 245667777664
No 147
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.20 E-value=0.00018 Score=67.70 Aligned_cols=30 Identities=30% Similarity=0.586 Sum_probs=27.4
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeEe
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFYR 233 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~i 233 (613)
.|+|+|+||+|||++|+.++..+|.+++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 599999999999999999999999987753
No 148
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.18 E-value=0.0017 Score=65.16 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=31.8
Q ss_pred CceEEEEccCCChHHHHHHHHHHh---cCCCeeEeecchhh
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGE---AGVPFFYRAGSEFE 239 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e---~~~pfi~is~s~~~ 239 (613)
+.-|+|+|+||+|||++|+.++.. .|.+++.++...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 456999999999999999999997 78888866665544
No 149
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.17 E-value=0.00026 Score=67.75 Aligned_cols=35 Identities=31% Similarity=0.457 Sum_probs=30.2
Q ss_pred CCCCceEEEEccCCChHHHHHHHHHHhcCCCeeEe
Q 007190 199 GKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 233 (613)
Q Consensus 199 ~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~i 233 (613)
...|..|+|+|+||+|||++++.++..++.+++.+
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 34566799999999999999999999999887654
No 150
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.16 E-value=0.00043 Score=77.75 Aligned_cols=97 Identities=25% Similarity=0.341 Sum_probs=55.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhhh----hhhhHHHHHHHHHHH---------HcCCCeEEE
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEMF----VGVGARRVRSLFQAA---------KKKAPCIIF 266 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~~----~g~~~~~vr~lf~~A---------~~~~P~ILf 266 (613)
+.++++||||||||+++++++..+ +.+++.+..+.-.... .+.....+..++... ......+|+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlI 284 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLI 284 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEE
Confidence 468999999999999999998744 5666655433211111 111111222222110 011346999
Q ss_pred EcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCC
Q 007190 267 IDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNL 312 (613)
Q Consensus 267 IDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~ 312 (613)
|||+..+ ....+..|+..+ .....++++|-.+.
T Consensus 285 IDEasml----------~~~~~~~Ll~~~---~~~~~lilvGD~~Q 317 (574)
T 3e1s_A 285 VDEVSMM----------GDALMLSLLAAV---PPGARVLLVGDTDQ 317 (574)
T ss_dssp ECCGGGC----------CHHHHHHHHTTS---CTTCEEEEEECTTS
T ss_pred EcCccCC----------CHHHHHHHHHhC---cCCCEEEEEecccc
Confidence 9999877 234555555443 34556777776553
No 151
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.15 E-value=0.0031 Score=68.39 Aligned_cols=73 Identities=19% Similarity=0.173 Sum_probs=49.9
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhh-------h-------------hhhhHHHHHHHHHHH
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM-------F-------------VGVGARRVRSLFQAA 257 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~-------~-------------~g~~~~~vr~lf~~A 257 (613)
.|.-++++||||+||||++..+|..+ |..+..+++..+... + .......+++.+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999998754 555655555433110 0 011234456777788
Q ss_pred HcCCCeEEEEcCCCcc
Q 007190 258 KKKAPCIIFIDEIDAV 273 (613)
Q Consensus 258 ~~~~P~ILfIDEiD~l 273 (613)
+...+.+|+||....+
T Consensus 179 ~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HhCCCCEEEEECCCcc
Confidence 7777789999987543
No 152
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.15 E-value=0.00026 Score=65.33 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=27.8
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeEee
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 234 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~is 234 (613)
-|+|.||||+||||+++.+++.++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5899999999999999999999998887544
No 153
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.15 E-value=0.00022 Score=66.97 Aligned_cols=33 Identities=45% Similarity=0.752 Sum_probs=28.8
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcCCCeeEe
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 233 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~i 233 (613)
.++.|+|+|+||+|||++++.++..++.+++..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 345799999999999999999999999887653
No 154
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.12 E-value=0.00031 Score=66.29 Aligned_cols=39 Identities=33% Similarity=0.494 Sum_probs=32.4
Q ss_pred CCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchh
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 238 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~ 238 (613)
..+..+.|.||||+||||+++.+++..+.+.+.+++.++
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 344568999999999999999999987777777776654
No 155
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.12 E-value=0.0014 Score=71.03 Aligned_cols=37 Identities=27% Similarity=0.158 Sum_probs=28.7
Q ss_pred CCCCceEEEEccCCChHHHHHHHHHHhc----CCCeeEeec
Q 007190 199 GKLPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAG 235 (613)
Q Consensus 199 ~~~p~gvLL~GPpGTGKT~LAralA~e~----~~pfi~is~ 235 (613)
..+..-++|+|+||+|||+||..+|... +.|+++++.
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 3444568999999999999999997643 567777765
No 156
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.11 E-value=0.00028 Score=66.32 Aligned_cols=34 Identities=24% Similarity=0.415 Sum_probs=29.2
Q ss_pred CCCceEEEEccCCChHHHHHHHHHHhcCCCeeEe
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 233 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~i 233 (613)
..|+-|+|+|+||+|||++++.++..++.+++..
T Consensus 4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 4567899999999999999999999999766643
No 157
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.10 E-value=0.00022 Score=66.73 Aligned_cols=29 Identities=34% Similarity=0.587 Sum_probs=26.8
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeE
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFY 232 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~ 232 (613)
.++|.||||+|||++++.||+.++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58999999999999999999999988765
No 158
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.09 E-value=0.00029 Score=65.42 Aligned_cols=31 Identities=26% Similarity=0.597 Sum_probs=27.1
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCeeE
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFY 232 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~~~pfi~ 232 (613)
+..+.|+||||+||||+++.+|+.++.+++.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 4569999999999999999999999876653
No 159
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.09 E-value=0.00027 Score=66.98 Aligned_cols=32 Identities=47% Similarity=0.664 Sum_probs=27.7
Q ss_pred CceEEEEccCCChHHHHHHHHHHh-cCCCeeEe
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGE-AGVPFFYR 233 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e-~~~pfi~i 233 (613)
+..++|+|+||+|||++++.++.. .|.+++.+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 456999999999999999999999 68777653
No 160
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.08 E-value=0.0003 Score=65.26 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=28.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCeeEe
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 233 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~~pfi~i 233 (613)
..++|.|+||+|||++++.+|..++.|++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4799999999999999999999999998764
No 161
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.06 E-value=0.003 Score=62.52 Aligned_cols=33 Identities=24% Similarity=0.222 Sum_probs=28.4
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeEeecc
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGS 236 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s 236 (613)
.++++||+|+|||.++.+++...+.+.+.+...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 489999999999999999999888777766544
No 162
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.06 E-value=0.00028 Score=66.43 Aligned_cols=31 Identities=26% Similarity=0.462 Sum_probs=27.7
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCeeE
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFY 232 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~~~pfi~ 232 (613)
|.-|+|.|+||+||||+++.++..++.+++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 5679999999999999999999999987654
No 163
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.04 E-value=0.00028 Score=65.65 Aligned_cols=30 Identities=33% Similarity=0.499 Sum_probs=24.8
Q ss_pred CceEEEEccCCChHHHHHHHHHH-hcCCCee
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAG-EAGVPFF 231 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~-e~~~pfi 231 (613)
|+-++|.||||+||||+++.++. ..+.+++
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 56799999999999999999998 4554443
No 164
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.03 E-value=0.0016 Score=62.45 Aligned_cols=23 Identities=39% Similarity=0.611 Sum_probs=21.0
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~ 226 (613)
-+.|.||+|+||||+++.+++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999865
No 165
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.03 E-value=0.0058 Score=63.06 Aligned_cols=73 Identities=22% Similarity=0.227 Sum_probs=46.1
Q ss_pred CCCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhh-------hh-------------hhhHHHHHHHHH
Q 007190 199 GKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM-------FV-------------GVGARRVRSLFQ 255 (613)
Q Consensus 199 ~~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~-------~~-------------g~~~~~vr~lf~ 255 (613)
...|+-++++||+|+||||++..+|..+ +..+..+++..+... |. +.......+.+.
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 4567789999999999999999999864 445555554332111 10 011112233455
Q ss_pred HHHcCCCeEEEEcCCC
Q 007190 256 AAKKKAPCIIFIDEID 271 (613)
Q Consensus 256 ~A~~~~P~ILfIDEiD 271 (613)
.+....|.+|+||+.-
T Consensus 181 ~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 181 HALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHTTCSEEEEEECC
T ss_pred HHHhcCCCEEEEECCC
Confidence 5566678899999874
No 166
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.01 E-value=0.00044 Score=66.19 Aligned_cols=32 Identities=38% Similarity=0.736 Sum_probs=28.4
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcCCCeeE
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFY 232 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~ 232 (613)
.|+-++|+||||+||||+++.|++.++.+++.
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 35679999999999999999999999877765
No 167
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.01 E-value=0.001 Score=67.70 Aligned_cols=36 Identities=19% Similarity=0.189 Sum_probs=27.3
Q ss_pred CCCCceEEEEccCCChHHHHHHHHHHhc----CCCeeEee
Q 007190 199 GKLPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRA 234 (613)
Q Consensus 199 ~~~p~gvLL~GPpGTGKT~LAralA~e~----~~pfi~is 234 (613)
.....-++|.||||+|||+|++.++... |.++++++
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3344568999999999999999998854 44565554
No 168
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.01 E-value=0.00036 Score=65.92 Aligned_cols=33 Identities=24% Similarity=0.400 Sum_probs=28.6
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcCCCeeEe
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 233 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~i 233 (613)
.+.-++|.|+||+||||+++.++..++.+++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 345799999999999999999999999876654
No 169
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.98 E-value=0.00052 Score=64.37 Aligned_cols=39 Identities=28% Similarity=0.445 Sum_probs=32.3
Q ss_pred CCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchh
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEF 238 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~ 238 (613)
..+.-+.|+|++|+||||+++.+++.+ |.|++.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 345678999999999999999999987 899988875443
No 170
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.97 E-value=0.0004 Score=67.51 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=28.7
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcCCCeeEe
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 233 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~i 233 (613)
.+..|+|.|+||+||||+++.||..++.+++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 456799999999999999999999999876653
No 171
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.96 E-value=0.00035 Score=64.18 Aligned_cols=29 Identities=41% Similarity=0.639 Sum_probs=25.9
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeEe
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFYR 233 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~i 233 (613)
-++|+||||+|||++++.+ ...|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5889999999999999999 8889887764
No 172
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.95 E-value=0.00041 Score=64.25 Aligned_cols=30 Identities=30% Similarity=0.515 Sum_probs=27.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCeeE
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAGVPFFY 232 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~~pfi~ 232 (613)
+.|+|+|+||+|||++++.++..++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 358999999999999999999999988765
No 173
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.95 E-value=0.00047 Score=69.09 Aligned_cols=32 Identities=34% Similarity=0.332 Sum_probs=28.9
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeEeec
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAG 235 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~is~ 235 (613)
-++|+||||+|||++|+.||++.+.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 58899999999999999999999998887654
No 174
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.94 E-value=0.00039 Score=67.63 Aligned_cols=32 Identities=31% Similarity=0.539 Sum_probs=28.1
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCeeEe
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 233 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~~~pfi~i 233 (613)
+..|+|.|+||+||||+++.||..++.+++..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 35699999999999999999999999877654
No 175
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.93 E-value=0.0037 Score=69.70 Aligned_cols=74 Identities=15% Similarity=0.248 Sum_probs=52.3
Q ss_pred eEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCC--CCChhhcCCCccceEEEccCCCHhhH
Q 007190 263 CIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD--ILDPALTRPGRFDRHIVVPNPDVRGR 340 (613)
Q Consensus 263 ~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~--~Ld~aLlRpgRFd~~I~v~~Pd~~~R 340 (613)
-+|+|||++.+.... .......+.++.. ....-+|.+|.+|.+|. .|+..++. -|...|.+...+..+.
T Consensus 345 ivvVIDE~~~L~~~~---~~~~~~~L~~Iar----~GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s~~Ds 415 (574)
T 2iut_A 345 IVVVVDEFADMMMIV---GKKVEELIARIAQ----KARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSSKIDS 415 (574)
T ss_dssp EEEEESCCTTHHHHT---CHHHHHHHHHHHH----HCTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSCHHHH
T ss_pred EEEEEeCHHHHhhhh---hHHHHHHHHHHHH----HHhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCCHHHH
Confidence 589999999885421 1112233333333 34567899999999997 78888876 6888899999998888
Q ss_pred HHHHH
Q 007190 341 QEILE 345 (613)
Q Consensus 341 ~~IL~ 345 (613)
..||.
T Consensus 416 r~ILd 420 (574)
T 2iut_A 416 RTILD 420 (574)
T ss_dssp HHHHS
T ss_pred HHhcC
Confidence 77774
No 176
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.92 E-value=0.0038 Score=64.52 Aligned_cols=37 Identities=22% Similarity=0.108 Sum_probs=28.4
Q ss_pred CCCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeec
Q 007190 199 GKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAG 235 (613)
Q Consensus 199 ~~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~ 235 (613)
..+..-++|.|+||+|||+|+..+|..+ +.++++++.
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 3344569999999999999999998654 456776664
No 177
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.91 E-value=0.00046 Score=65.39 Aligned_cols=32 Identities=25% Similarity=0.432 Sum_probs=27.7
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCeeEe
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 233 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~~~pfi~i 233 (613)
|.-|+|+|+||+|||++++.++..++.+++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 45799999999999999999999998766543
No 178
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.91 E-value=0.00043 Score=64.78 Aligned_cols=30 Identities=27% Similarity=0.305 Sum_probs=23.8
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCee
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEAGVPFF 231 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~~~pfi 231 (613)
|.-|+|+|+||+|||++++.++..++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 457999999999999999999999999887
No 179
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.90 E-value=0.00046 Score=67.50 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=28.2
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcCCCeeEe
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 233 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~i 233 (613)
.|.-++|.||||+|||++++.|+..++.+++..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 456799999999999999999999998776653
No 180
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.90 E-value=0.0034 Score=67.93 Aligned_cols=73 Identities=25% Similarity=0.208 Sum_probs=46.8
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhh----------hhh----------hhHHHHHHHHHHH
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM----------FVG----------VGARRVRSLFQAA 257 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~----------~~g----------~~~~~vr~lf~~A 257 (613)
.|.-++++||+|+||||++..+|..+ |..+..+++..+... ..| .........+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 57789999999999999999998754 555555554322110 001 0112234455566
Q ss_pred HcCCCeEEEEcCCCcc
Q 007190 258 KKKAPCIIFIDEIDAV 273 (613)
Q Consensus 258 ~~~~P~ILfIDEiD~l 273 (613)
+...+.+|+||....+
T Consensus 176 ~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTTCSEEEEEECCCS
T ss_pred HhcCCCEEEEECCCCc
Confidence 6567889999987544
No 181
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.90 E-value=0.0019 Score=80.29 Aligned_cols=111 Identities=18% Similarity=0.242 Sum_probs=76.5
Q ss_pred CCCce--EEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhh-----h-----------hhhhhhHHHHHHHHHHHH
Q 007190 200 KLPKG--ILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFE-----E-----------MFVGVGARRVRSLFQAAK 258 (613)
Q Consensus 200 ~~p~g--vLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~-----~-----------~~~g~~~~~vr~lf~~A~ 258 (613)
-.|+| +++|||+|||||+||-.++.++ |-...+++...-. . .+...++..+.-+...++
T Consensus 1427 G~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~ 1506 (1706)
T 3cmw_A 1427 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1506 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHH
Confidence 55665 9999999999999998886544 6677777654211 1 123335677777888889
Q ss_pred cCCCeEEEEcCCCccccCCccC-------CcccHHHHHHHHHHhhccccCCceEEEeec
Q 007190 259 KKAPCIIFIDEIDAVGSTRKQW-------EGHTKKTLHQLLVEMDGFEQNEGIILMAAT 310 (613)
Q Consensus 259 ~~~P~ILfIDEiD~l~~~r~~~-------~~~~~~~l~~LL~~ldg~~~~~~ViVIaaT 310 (613)
..+|++|+||-+.++.++.+-. -+-..+.+.+.|..|.++-...++.+|.+.
T Consensus 1507 s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~~~~~~~i~~~ 1565 (1706)
T 3cmw_A 1507 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1565 (1706)
T ss_dssp HTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred cCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHHhCCcEEEEee
Confidence 9999999999999998765321 111245566667777776555666666553
No 182
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.87 E-value=0.00049 Score=64.62 Aligned_cols=31 Identities=29% Similarity=0.494 Sum_probs=26.9
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCeeE
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFY 232 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~~~pfi~ 232 (613)
+..++|+||||+||||+++.+++.++.+++.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 3468999999999999999999999876654
No 183
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.86 E-value=0.00061 Score=65.07 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=28.5
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcCCCeeEe
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 233 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~i 233 (613)
.|+-|+|+|+||+|||++++.+++.++.+++..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 456799999999999999999999998766654
No 184
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.86 E-value=0.00055 Score=68.09 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=29.3
Q ss_pred CCCceEEEEccCCChHHHHHHHHHHhcCCCeeEe
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 233 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~i 233 (613)
+.|.-|+|.||||+||||+|+.++++++.+++.+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 3567899999999999999999999998776643
No 185
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.86 E-value=0.00043 Score=64.98 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=23.6
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcC
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEAG 227 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~~ 227 (613)
+.-++|+||||+||||+++.++..++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34699999999999999999999887
No 186
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.84 E-value=0.0019 Score=68.17 Aligned_cols=95 Identities=19% Similarity=0.247 Sum_probs=55.4
Q ss_pred eEEEEccCCChHHHHHHHHHHhc----CCCeeEeec-chhh---------hhhhhhhHHHHHHHHHHHHcCCCeEEEEcC
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAG-SEFE---------EMFVGVGARRVRSLFQAAKKKAPCIIFIDE 269 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~----~~pfi~is~-s~~~---------~~~~g~~~~~vr~lf~~A~~~~P~ILfIDE 269 (613)
.+++.||+|+||||+.+++++.. +..++.+.. .++. ....+.......+.+..+-...|.+|++||
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillDE 204 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGE 204 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEESC
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecCC
Confidence 58999999999999999998865 222222211 1110 000111112344567777778999999999
Q ss_pred CCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCCC
Q 007190 270 IDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDI 315 (613)
Q Consensus 270 iD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~ 315 (613)
+-. ..+...++.... .+..|+.++...+.
T Consensus 205 p~d------------~e~~~~~~~~~~-----~G~~vl~t~H~~~~ 233 (356)
T 3jvv_A 205 MRD------------LETIRLALTAAE-----TGHLVFGTLHTTSA 233 (356)
T ss_dssp CCS------------HHHHHHHHHHHH-----TTCEEEEEESCSSH
T ss_pred CCC------------HHHHHHHHHHHh-----cCCEEEEEEccChH
Confidence 841 234444444332 24456777765543
No 187
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.83 E-value=0.00059 Score=65.95 Aligned_cols=30 Identities=30% Similarity=0.599 Sum_probs=26.6
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeEe
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFYR 233 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~i 233 (613)
.|+|+||||+||||+++.++.+.+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 388999999999999999999998877654
No 188
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.82 E-value=0.0039 Score=68.86 Aligned_cols=75 Identities=20% Similarity=0.361 Sum_probs=51.2
Q ss_pred Ce-EEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCC--CCChhhcCCCccceEEEccCCCHh
Q 007190 262 PC-IIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPD--ILDPALTRPGRFDRHIVVPNPDVR 338 (613)
Q Consensus 262 P~-ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~--~Ld~aLlRpgRFd~~I~v~~Pd~~ 338 (613)
|. +|+|||+..+... ....+..++..+-......++.+|.+|.+|. .++..++. .|...|.+...+..
T Consensus 297 P~ivlvIDE~~~ll~~-------~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s~~ 367 (512)
T 2ius_A 297 PYIVVLVDEFADLMMT-------VGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSSKI 367 (512)
T ss_dssp CEEEEEEETHHHHHHH-------HHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSSHH
T ss_pred CcEEEEEeCHHHHHhh-------hhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEcCCHH
Confidence 54 8999999877431 0112223333332223445788889999987 68877776 78888999999988
Q ss_pred hHHHHHH
Q 007190 339 GRQEILE 345 (613)
Q Consensus 339 ~R~~IL~ 345 (613)
+...|+.
T Consensus 368 dsr~ilg 374 (512)
T 2ius_A 368 DSRTILD 374 (512)
T ss_dssp HHHHHHS
T ss_pred HHHHhcC
Confidence 8888774
No 189
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.82 E-value=0.00047 Score=67.12 Aligned_cols=32 Identities=22% Similarity=0.388 Sum_probs=27.7
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcCCCeeE
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFY 232 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~ 232 (613)
.|..|+|.||||+||||+++.+|..++.+++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 45679999999999999999999999976554
No 190
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.80 E-value=0.00066 Score=66.75 Aligned_cols=32 Identities=28% Similarity=0.301 Sum_probs=28.1
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCeeEe
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 233 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~~~pfi~i 233 (613)
+..|+|.|+||+|||++++.||.+++.+++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 45799999999999999999999999776653
No 191
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.80 E-value=0.00067 Score=66.68 Aligned_cols=39 Identities=18% Similarity=0.333 Sum_probs=31.3
Q ss_pred CCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhh
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEE 240 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~ 240 (613)
+.|+-|+|.||||+||+|.|+.|++.++.+.+ +..++..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI--stGdllR 65 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL--SSGDLLR 65 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEEE--CHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCceE--cHHHHHH
Confidence 45678999999999999999999999986654 5455443
No 192
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.79 E-value=0.00065 Score=65.56 Aligned_cols=30 Identities=33% Similarity=0.546 Sum_probs=26.7
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeEe
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFYR 233 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~i 233 (613)
.|+|.||||+||||+|+.++.+.+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 378999999999999999999999877654
No 193
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.78 E-value=0.00068 Score=62.54 Aligned_cols=30 Identities=23% Similarity=0.438 Sum_probs=27.1
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeEe
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFYR 233 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~i 233 (613)
.|+|+|+||+|||++++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 489999999999999999999999887753
No 194
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.73 E-value=0.00093 Score=62.19 Aligned_cols=31 Identities=26% Similarity=0.419 Sum_probs=26.6
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCeeE
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFY 232 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~~~pfi~ 232 (613)
+..+.|+||||+|||++++.+++..|.+++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 3568999999999999999999998866554
No 195
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.71 E-value=0.0071 Score=58.38 Aligned_cols=116 Identities=14% Similarity=0.097 Sum_probs=65.6
Q ss_pred eEEEEccCCChHHHHHHHHHHhc---CCCeeEee---cc------hhhhhhh-----------------hhhHHHHHHHH
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEA---GVPFFYRA---GS------EFEEMFV-----------------GVGARRVRSLF 254 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~---~~pfi~is---~s------~~~~~~~-----------------g~~~~~vr~lf 254 (613)
.+++|+++|.|||++|-++|-++ |.++..+. +. .+...+. .......+..+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 58999999999999999998765 66666552 21 1222220 00123445555
Q ss_pred HHHHc----CCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCCCCChhhcCCCccceEE
Q 007190 255 QAAKK----KAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHI 330 (613)
Q Consensus 255 ~~A~~----~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~Ld~aLlRpgRFd~~I 330 (613)
..+++ ....+|+|||+-....-. --.. ..++..+.. .....-||.|+|.+ ++.|+. .-|.+-
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~g----~l~~---~ev~~~l~~--Rp~~~~vIlTGr~a---p~~l~e--~AD~VT 175 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAYD----YLPL---EEVISALNA--RPGHQTVIITGRGC---HRDILD--LADTVS 175 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHTT----SSCH---HHHHHHHHT--SCTTCEEEEECSSC---CHHHHH--HCSEEE
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccCC----CCCH---HHHHHHHHh--CcCCCEEEEECCCC---cHHHHH--hCccee
Confidence 55543 446899999996542110 0011 234444442 33445566677754 556654 555555
Q ss_pred Ecc
Q 007190 331 VVP 333 (613)
Q Consensus 331 ~v~ 333 (613)
++.
T Consensus 176 em~ 178 (196)
T 1g5t_A 176 ELR 178 (196)
T ss_dssp ECC
T ss_pred eec
Confidence 543
No 196
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.69 E-value=0.00093 Score=69.58 Aligned_cols=36 Identities=33% Similarity=0.436 Sum_probs=31.5
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecc
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGS 236 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s 236 (613)
+|+.++|+||+|+|||++++.+|++++.+++.++.-
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 456799999999999999999999999888877654
No 197
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.68 E-value=0.0011 Score=63.48 Aligned_cols=36 Identities=31% Similarity=0.631 Sum_probs=28.8
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecchh
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 238 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~ 238 (613)
.+.-+.|.||||+||||+++.+++..|..++ ++.++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i--~~d~~ 63 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFA--EADAF 63 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEE--EGGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEE--ccccc
Confidence 4567999999999999999999999876544 44443
No 198
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.65 E-value=0.013 Score=60.19 Aligned_cols=36 Identities=25% Similarity=0.277 Sum_probs=28.3
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc----CCCeeEeecc
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGS 236 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~----~~pfi~is~s 236 (613)
.++.++|+||+|+||||++..+|..+ |..+..+++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 46789999999999999999998754 5566655543
No 199
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.60 E-value=0.0081 Score=66.01 Aligned_cols=38 Identities=13% Similarity=0.016 Sum_probs=29.3
Q ss_pred CCCCceEEEEccCCChHHHHHHHHHHhc----CCCeeEeecc
Q 007190 199 GKLPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGS 236 (613)
Q Consensus 199 ~~~p~gvLL~GPpGTGKT~LAralA~e~----~~pfi~is~s 236 (613)
..+..-++|.|+||+|||+|+..+|..+ +.++++++..
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 3344568999999999999999998754 5677777653
No 200
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.56 E-value=0.0012 Score=63.95 Aligned_cols=30 Identities=37% Similarity=0.500 Sum_probs=26.8
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeEe
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFYR 233 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~i 233 (613)
.++|.||||+||||+++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 489999999999999999999999877654
No 201
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.54 E-value=0.0012 Score=61.78 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=26.9
Q ss_pred eEEEEccCCChHHHHHHHHHHhcC---CCeeEeecch
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAG---VPFFYRAGSE 237 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~---~pfi~is~s~ 237 (613)
-|+|.||||+||||+++.+++.++ .++..++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~ 39 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGD 39 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECCh
Confidence 589999999999999999999775 3455555443
No 202
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.54 E-value=0.0024 Score=61.18 Aligned_cols=24 Identities=38% Similarity=0.634 Sum_probs=21.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
+.|+|+||+|+|||+|++.+..+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 349999999999999999998765
No 203
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.53 E-value=0.0019 Score=61.79 Aligned_cols=39 Identities=28% Similarity=0.337 Sum_probs=29.7
Q ss_pred CCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchh
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEF 238 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~ 238 (613)
..+.-+.|.||+|+||||+++++++.+ |...+++++.++
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 345678999999999999999999987 544345554443
No 204
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.51 E-value=0.0085 Score=65.04 Aligned_cols=37 Identities=22% Similarity=0.108 Sum_probs=28.7
Q ss_pred CCCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeec
Q 007190 199 GKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAG 235 (613)
Q Consensus 199 ~~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~ 235 (613)
..+..-++|.|+||+|||+||..+|..+ |.++++++.
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 3344458999999999999999998754 667777764
No 205
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.49 E-value=0.0018 Score=60.72 Aligned_cols=31 Identities=29% Similarity=0.223 Sum_probs=27.7
Q ss_pred eEEEEccCCChHHHHHHHHHHhc---CCCeeEee
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEA---GVPFFYRA 234 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~---~~pfi~is 234 (613)
-+.|+|+||+||||+++.+++.+ |.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 47899999999999999999987 88888764
No 206
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.49 E-value=0.0017 Score=61.73 Aligned_cols=33 Identities=21% Similarity=0.183 Sum_probs=28.6
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc-CCCeeEee
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEA-GVPFFYRA 234 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~-~~pfi~is 234 (613)
++-|.|.|+||+||||+++.+++.+ |.+++.++
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 4579999999999999999999998 57777654
No 207
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.49 E-value=0.00093 Score=70.38 Aligned_cols=29 Identities=24% Similarity=0.547 Sum_probs=27.0
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeE
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFY 232 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~ 232 (613)
.++|+||||+|||++++++|+.++.+|+.
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 69999999999999999999999988865
No 208
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.47 E-value=0.0018 Score=62.70 Aligned_cols=30 Identities=30% Similarity=0.368 Sum_probs=26.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCeeE
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAGVPFFY 232 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~~pfi~ 232 (613)
..+.|.||||+||||+++.+++.++.+++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 468999999999999999999999987764
No 209
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.47 E-value=0.0015 Score=63.50 Aligned_cols=34 Identities=29% Similarity=0.469 Sum_probs=27.9
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhh
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFE 239 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~ 239 (613)
.++|.||||+||+|.|+.||+..|.+.+ +..++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~i--stGdll 35 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHI--STGDIL 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEE--cHHHHH
Confidence 3789999999999999999999987655 444543
No 210
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.42 E-value=0.0014 Score=62.52 Aligned_cols=29 Identities=31% Similarity=0.353 Sum_probs=25.7
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeEe
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFYR 233 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~i 233 (613)
.+.|+||+|+||||+++.+++ .|.+++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 488999999999999999999 88777654
No 211
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.41 E-value=0.0019 Score=61.30 Aligned_cols=31 Identities=32% Similarity=0.422 Sum_probs=26.9
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcCCCeeE
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFY 232 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~ 232 (613)
.|..|.|+|++|+|||++++.+++. |.+++.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~-g~~~id 37 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW-GYPVLD 37 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT-TCCEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC-CCEEEc
Confidence 3567999999999999999999998 877664
No 212
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.39 E-value=0.0025 Score=60.67 Aligned_cols=30 Identities=27% Similarity=0.582 Sum_probs=27.4
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeEe
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFYR 233 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~i 233 (613)
.+.|.|++|+|||++++.+++.++.+++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 688999999999999999999999888753
No 213
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.38 E-value=0.0013 Score=62.96 Aligned_cols=31 Identities=19% Similarity=0.107 Sum_probs=26.3
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcCCCee
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFF 231 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~~~pfi 231 (613)
.|+-|.|+|+||+||||+++.+++.++.+++
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~ 39 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNV 39 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 4567999999999999999999998765544
No 214
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.38 E-value=0.0095 Score=67.22 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=19.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e 225 (613)
+.++++||||||||+++..+...
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~ 187 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAA 187 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHH
Confidence 36999999999999998877654
No 215
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.37 E-value=0.0018 Score=61.35 Aligned_cols=29 Identities=28% Similarity=0.499 Sum_probs=26.2
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeE
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFY 232 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~ 232 (613)
-+.|.|+||+||||+++.+++.++.+++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 47899999999999999999999987764
No 216
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.37 E-value=0.0014 Score=66.19 Aligned_cols=68 Identities=22% Similarity=0.335 Sum_probs=40.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC----CCeeEeecchh----------h-hhhhhhhHHHHHHHHHHHHcCCCeEEEE
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAG----VPFFYRAGSEF----------E-EMFVGVGARRVRSLFQAAKKKAPCIIFI 267 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~----~pfi~is~s~~----------~-~~~~g~~~~~vr~lf~~A~~~~P~ILfI 267 (613)
.-++|+||+|+||||+++++++... ..++. ....+ . ...+|.....++..+..+-...|.+|++
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~-~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~illl 104 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIIT-IEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFV 104 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEE-EESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEEE
T ss_pred CEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEE-cCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEEe
Confidence 3588999999999999999998542 22211 11110 0 0001111123355555665568999999
Q ss_pred cCCC
Q 007190 268 DEID 271 (613)
Q Consensus 268 DEiD 271 (613)
||.-
T Consensus 105 DEp~ 108 (261)
T 2eyu_A 105 GEMR 108 (261)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9983
No 217
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.36 E-value=0.0022 Score=63.86 Aligned_cols=40 Identities=20% Similarity=0.173 Sum_probs=31.7
Q ss_pred CCCceEEEEccCCChHHHHHHHHHHhcCCCe--------eEeecchhh
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAGEAGVPF--------FYRAGSEFE 239 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~e~~~pf--------i~is~s~~~ 239 (613)
..|.-|.|.|+||+|||++|+.|+..++.++ ..++..++.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 3456799999999999999999999999874 256666654
No 218
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.35 E-value=0.0031 Score=66.82 Aligned_cols=78 Identities=22% Similarity=0.315 Sum_probs=45.4
Q ss_pred hhhcCCCCCceEEEEccCCChHHHHHHHHHHhcC----CCeeEeecc-hh--------hhh-hhhhhHHHHHHHHHHHHc
Q 007190 194 FTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG----VPFFYRAGS-EF--------EEM-FVGVGARRVRSLFQAAKK 259 (613)
Q Consensus 194 ~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~----~pfi~is~s-~~--------~~~-~~g~~~~~vr~lf~~A~~ 259 (613)
+..+...+...++|+||+|+||||+++++++... ..++.+... ++ ... .+|.....++..+..+-.
T Consensus 128 l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~ 207 (372)
T 2ewv_A 128 VLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALR 207 (372)
T ss_dssp HHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTT
T ss_pred HHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhh
Confidence 3333334445689999999999999999998542 222222210 00 000 011111223455566666
Q ss_pred CCCeEEEEcCCC
Q 007190 260 KAPCIIFIDEID 271 (613)
Q Consensus 260 ~~P~ILfIDEiD 271 (613)
..|.+|++||+-
T Consensus 208 ~~pd~illdE~~ 219 (372)
T 2ewv_A 208 EDPDVIFVGEMR 219 (372)
T ss_dssp SCCSEEEESCCC
T ss_pred hCcCEEEECCCC
Confidence 789999999984
No 219
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.34 E-value=0.015 Score=69.11 Aligned_cols=43 Identities=23% Similarity=0.271 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHh
Q 007190 172 KGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 172 ~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e 225 (613)
+|.++.+++|.+.+... ..++-+.|+||+|+|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~~-----------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL-----------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC-----------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc-----------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 89999888887766421 12457899999999999999999863
No 220
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.33 E-value=0.012 Score=56.01 Aligned_cols=23 Identities=39% Similarity=0.511 Sum_probs=19.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e 225 (613)
+.+++++|+|+|||+++-.++.+
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999998877764
No 221
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.30 E-value=0.0021 Score=62.73 Aligned_cols=29 Identities=21% Similarity=0.363 Sum_probs=25.7
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeE
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFY 232 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~ 232 (613)
-++|.||||+||||+++.++..++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~ 30 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIE 30 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 38899999999999999999999876654
No 222
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.29 E-value=0.0028 Score=59.79 Aligned_cols=30 Identities=23% Similarity=0.373 Sum_probs=26.2
Q ss_pred EEEEccCCChHHHHHHHHHHhc---CCCeeEee
Q 007190 205 ILLTGAPGTGKTLLAKAIAGEA---GVPFFYRA 234 (613)
Q Consensus 205 vLL~GPpGTGKT~LAralA~e~---~~pfi~is 234 (613)
|.|.|+||+||||+++.+++.+ |.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 7899999999999999999988 99887654
No 223
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.28 E-value=0.0015 Score=62.51 Aligned_cols=29 Identities=17% Similarity=0.207 Sum_probs=24.9
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcCCC
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEAGVP 229 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~~~p 229 (613)
.|.-|+|+|+||+||||+++.++..++.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35679999999999999999999986543
No 224
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.27 E-value=0.0029 Score=62.57 Aligned_cols=32 Identities=25% Similarity=0.422 Sum_probs=27.7
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcCCCeeE
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFY 232 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~ 232 (613)
.|.-+.|.||||+||||+++.++..+|...+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 35689999999999999999999999876543
No 225
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.26 E-value=0.0024 Score=61.10 Aligned_cols=29 Identities=38% Similarity=0.511 Sum_probs=25.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCeeE
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAGVPFFY 232 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~~pfi~ 232 (613)
..+.|.||+|+||||+++.+++ +|.+++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 3588999999999999999998 7887764
No 226
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.25 E-value=0.0027 Score=63.01 Aligned_cols=32 Identities=22% Similarity=0.407 Sum_probs=27.5
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcCCCeeE
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFY 232 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~ 232 (613)
.|..+.|.||||+|||++++.+++.++.+++.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 35579999999999999999999999977654
No 227
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.18 E-value=0.0029 Score=60.22 Aligned_cols=28 Identities=21% Similarity=0.203 Sum_probs=24.8
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCC
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEAGVP 229 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~~~p 229 (613)
+.-|+|.|+||+||||+++.++..++.+
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 4568999999999999999999988764
No 228
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.17 E-value=0.0037 Score=59.95 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=24.6
Q ss_pred CCCceEEEEccCCChHHHHHHHHHHhcC
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAGEAG 227 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~e~~ 227 (613)
..++-++|+||||+|||++++.++...+
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 3556799999999999999999999874
No 229
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.17 E-value=0.0091 Score=55.71 Aligned_cols=20 Identities=35% Similarity=0.586 Sum_probs=17.6
Q ss_pred CceEEEEccCCChHHHHHHH
Q 007190 202 PKGILLTGAPGTGKTLLAKA 221 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAra 221 (613)
+.-+.|+||+|+|||||+++
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 44588999999999999994
No 230
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.14 E-value=0.0024 Score=66.78 Aligned_cols=36 Identities=28% Similarity=0.320 Sum_probs=31.0
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecc
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGS 236 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s 236 (613)
.++-++|.||+|+|||+|+..||++++.+++..+.-
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 345799999999999999999999999888776654
No 231
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.13 E-value=0.0021 Score=65.32 Aligned_cols=30 Identities=33% Similarity=0.495 Sum_probs=25.1
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc-CCCee
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEA-GVPFF 231 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~-~~pfi 231 (613)
|+-++|.|+||+||||+++.++.+. +.+++
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 5679999999999999999999974 55444
No 232
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.11 E-value=0.025 Score=62.47 Aligned_cols=72 Identities=28% Similarity=0.230 Sum_probs=47.1
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhhhh--------------hhh--------------hhHHHH
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFEEM--------------FVG--------------VGARRV 250 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~~~--------------~~g--------------~~~~~v 250 (613)
...++|.||||+|||+|++.++... |.+.+++...+-... +.. .+....
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g~~q 360 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHL 360 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHHHHH
Confidence 3458999999999999999998754 445555543321100 000 123455
Q ss_pred HHHHHHHHcCCCeEEEEcCCCcc
Q 007190 251 RSLFQAAKKKAPCIIFIDEIDAV 273 (613)
Q Consensus 251 r~lf~~A~~~~P~ILfIDEiD~l 273 (613)
+.++..+....|.+|+||=+..+
T Consensus 361 ~~~~a~~l~~~p~llilDp~~~L 383 (525)
T 1tf7_A 361 QIIKSEINDFKPARIAIDSLSAL 383 (525)
T ss_dssp HHHHHHHHTTCCSEEEEECHHHH
T ss_pred HHHHHHHHhhCCCEEEEcChHHH
Confidence 66777777788999999955555
No 233
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.11 E-value=0.0034 Score=64.90 Aligned_cols=38 Identities=32% Similarity=0.398 Sum_probs=31.9
Q ss_pred CCCceEEEEccCCChHHHHHHHHHHhcCCCeeEeecch
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE 237 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~ 237 (613)
..|+-++|+||+|+|||+|+..+|...+.++++.+.-.
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~q 45 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKILPVELISVDSAL 45 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTT
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccccc
Confidence 34667899999999999999999999988877765543
No 234
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.07 E-value=0.0052 Score=57.76 Aligned_cols=38 Identities=32% Similarity=0.344 Sum_probs=29.1
Q ss_pred CCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecch
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSE 237 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~ 237 (613)
..+.-++|+|+||+|||++++.++..+ +.++..+++..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~ 51 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW 51 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH
Confidence 345678999999999999999999876 44455555433
No 235
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.06 E-value=0.0046 Score=59.64 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=23.5
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcC
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEAG 227 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~~ 227 (613)
.++-+.|+||+|+|||++++.+++...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345689999999999999999999764
No 236
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.06 E-value=0.0032 Score=65.94 Aligned_cols=37 Identities=16% Similarity=0.019 Sum_probs=28.5
Q ss_pred CCCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeec
Q 007190 199 GKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAG 235 (613)
Q Consensus 199 ~~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~ 235 (613)
..+..-++|.|+||+|||+|+..+|..+ +.++.+++.
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 3344468999999999999999998763 667666654
No 237
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.06 E-value=0.029 Score=61.96 Aligned_cols=111 Identities=20% Similarity=0.228 Sum_probs=60.2
Q ss_pred CCceEEEEccCCChHHHHHHH--HHHhc--CCCeeEeecchhhhhh------hhh-------------------------
Q 007190 201 LPKGILLTGAPGTGKTLLAKA--IAGEA--GVPFFYRAGSEFEEMF------VGV------------------------- 245 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAra--lA~e~--~~pfi~is~s~~~~~~------~g~------------------------- 245 (613)
....++|.||+|+|||+|++. +++-. +...+++++.+..... .|.
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~~~ 117 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEV 117 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCCSC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccchhhh
Confidence 345699999999999999999 44432 3445556553311000 000
Q ss_pred -----hHHHHHHHHHHHHcCCCeEEEEcCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCCCCCC
Q 007190 246 -----GARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDIL 316 (613)
Q Consensus 246 -----~~~~vr~lf~~A~~~~P~ILfIDEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~p~~L 316 (613)
................|.+|+|||.-++....+ .+......+..++..+. . .++.+|.+|...+.+
T Consensus 118 l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~-lD~~~~~~l~~ll~~l~---~-~g~tvl~itH~~~~~ 188 (525)
T 1tf7_A 118 VGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYD-ASSVVRRELFRLVARLK---Q-IGATTVMTTERIEEY 188 (525)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTC-CHHHHHHHHHHHHHHHH---H-HTCEEEEEEECSSSS
T ss_pred hcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcC-CHHHHHHHHHHHHHHHH---H-CCCEEEEEecCCCCc
Confidence 011223333344456688999999987643210 01122334445555543 2 345566677766554
No 238
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.04 E-value=0.011 Score=57.00 Aligned_cols=70 Identities=19% Similarity=0.074 Sum_probs=42.8
Q ss_pred CceEEEEccCCChHH-HHHHHHHH--hcCCCeeEeecc---hhhhh---hhhhh-----HHHHHHHHHHHHcCCCeEEEE
Q 007190 202 PKGILLTGAPGTGKT-LLAKAIAG--EAGVPFFYRAGS---EFEEM---FVGVG-----ARRVRSLFQAAKKKAPCIIFI 267 (613)
Q Consensus 202 p~gvLL~GPpGTGKT-~LAralA~--e~~~pfi~is~s---~~~~~---~~g~~-----~~~vr~lf~~A~~~~P~ILfI 267 (613)
.+-.++|||.|+||| .|.+++.+ +.+..++.++.. .+... ..|.. .....+++...+. ..+|+|
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~~--~DvIlI 97 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALG--VAVIGI 97 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHHT--CSEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhccC--CCEEEE
Confidence 356889999999999 89999876 446777777643 11111 01100 0112234433332 469999
Q ss_pred cCCCcc
Q 007190 268 DEIDAV 273 (613)
Q Consensus 268 DEiD~l 273 (613)
||++-+
T Consensus 98 DEaQFf 103 (195)
T 1w4r_A 98 DEGQFF 103 (195)
T ss_dssp SSGGGC
T ss_pred Echhhh
Confidence 999988
No 239
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.03 E-value=0.0035 Score=62.80 Aligned_cols=31 Identities=35% Similarity=0.585 Sum_probs=28.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCeeEe
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 233 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~~pfi~i 233 (613)
..+.|.||||+|||++++.+|+.++.+|+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 4699999999999999999999999887753
No 240
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.02 E-value=0.0023 Score=66.71 Aligned_cols=70 Identities=19% Similarity=0.266 Sum_probs=46.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCC--CeeEeecch-h-----hhh--hhhhhHHHHHHHHHHHHcCCCeEEEEcCCCc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAGV--PFFYRAGSE-F-----EEM--FVGVGARRVRSLFQAAKKKAPCIIFIDEIDA 272 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~~--pfi~is~s~-~-----~~~--~~g~~~~~vr~lf~~A~~~~P~ILfIDEiD~ 272 (613)
..+++.||+|+||||+++++++.... -.+.+.+.. + ... ++..+..+.+..+..|-...|.+|++||.-.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~~ 251 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELRS 251 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence 46999999999999999999987532 233333321 1 000 1100234566777777778899999999754
No 241
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.00 E-value=0.0075 Score=58.30 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=23.5
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcC
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEAG 227 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~~ 227 (613)
.++-+.|+||+|+|||+|+++|++...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 446789999999999999999998754
No 242
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.99 E-value=0.0079 Score=57.74 Aligned_cols=36 Identities=22% Similarity=0.265 Sum_probs=29.2
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeEeecchhhhh
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEM 241 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~~~~ 241 (613)
.+.|+|++|+||||+++.++..+|.|++. +.++...
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid--~D~~~~~ 49 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVN--VDRIGHE 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE--HHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEE--CcHHHHH
Confidence 58899999999999999999988988765 4444433
No 243
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.98 E-value=0.0043 Score=59.78 Aligned_cols=39 Identities=26% Similarity=0.322 Sum_probs=31.1
Q ss_pred CCCceEEEEccCCChHHHHHHHHHHhc----CCCeeEeecchh
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGSEF 238 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~e~----~~pfi~is~s~~ 238 (613)
..+.-++|.|+||+|||++++.+++.+ |.+++.+++..+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 345678999999999999999999865 466777775544
No 244
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.98 E-value=0.0036 Score=60.38 Aligned_cols=32 Identities=28% Similarity=0.432 Sum_probs=28.1
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCeeEe
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 233 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~~~pfi~i 233 (613)
|..+.|+|+||+|||++++.++..+|.+++..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 44699999999999999999999999887653
No 245
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.98 E-value=0.0068 Score=65.15 Aligned_cols=34 Identities=24% Similarity=0.354 Sum_probs=28.7
Q ss_pred CCCCceEEEEccCCChHHHHHHHHHHhcCCCeeE
Q 007190 199 GKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFY 232 (613)
Q Consensus 199 ~~~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~ 232 (613)
...|.-|+|+|+||+|||++|+.++...+.+++.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 3456789999999999999999999998866554
No 246
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.98 E-value=0.0038 Score=60.31 Aligned_cols=31 Identities=32% Similarity=0.428 Sum_probs=26.6
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCeeEe
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYR 233 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~~~pfi~i 233 (613)
|.-|.|.|++|+|||++++.++. +|.+++..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 45789999999999999999998 88776653
No 247
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.92 E-value=0.0035 Score=60.03 Aligned_cols=32 Identities=25% Similarity=0.287 Sum_probs=26.1
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc-CCCeeEe
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEA-GVPFFYR 233 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~-~~pfi~i 233 (613)
+.-+.|.||||+|||++++.+++.. +++++..
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~ 53 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQ 53 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeC
Confidence 4458899999999999999999987 5555543
No 248
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.91 E-value=0.0057 Score=58.86 Aligned_cols=27 Identities=33% Similarity=0.556 Sum_probs=23.5
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcC
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEAG 227 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~~ 227 (613)
.+.-+.|.||+|+|||||++.|++...
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 445688999999999999999999764
No 249
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.83 E-value=0.03 Score=52.95 Aligned_cols=18 Identities=39% Similarity=0.482 Sum_probs=15.4
Q ss_pred ceEEEEccCCChHHHHHH
Q 007190 203 KGILLTGAPGTGKTLLAK 220 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAr 220 (613)
+.+++.+|+|+|||..+-
T Consensus 39 ~~~li~~~TGsGKT~~~~ 56 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFA 56 (207)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 579999999999998643
No 250
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.83 E-value=0.0059 Score=59.94 Aligned_cols=32 Identities=28% Similarity=0.449 Sum_probs=28.1
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcCCCeeE
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFY 232 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~ 232 (613)
.+..+.|.|++|+|||++++.+++.+|.+++.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 44568999999999999999999999987764
No 251
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.83 E-value=0.0044 Score=62.99 Aligned_cols=31 Identities=26% Similarity=0.284 Sum_probs=26.4
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcCCCeeE
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEAGVPFFY 232 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~~~pfi~ 232 (613)
.|.-|.|+|+||+||||+++.++ +.|.+++.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La-~lg~~~id 104 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK-NLGAYIID 104 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH-HHTCEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHH-HCCCcEEe
Confidence 35679999999999999999999 67877654
No 252
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.78 E-value=0.044 Score=53.60 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=17.5
Q ss_pred ceEEEEccCCChHHHHHHHHH
Q 007190 203 KGILLTGAPGTGKTLLAKAIA 223 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA 223 (613)
+.++++||+|+|||++...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 479999999999998766554
No 253
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.74 E-value=0.0061 Score=57.30 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=22.7
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcC
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEAG 227 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~~ 227 (613)
.+-+.|+||+|+|||||++.+++...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35689999999999999999998753
No 254
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.74 E-value=0.015 Score=65.80 Aligned_cols=38 Identities=29% Similarity=0.469 Sum_probs=33.2
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchh
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEF 238 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~ 238 (613)
.|.-|+|+|+||+||||+|++|+..+ |.+++.+++..+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 45679999999999999999999998 999998875544
No 255
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.70 E-value=0.0058 Score=64.01 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=28.7
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCeeEeec
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAG 235 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~ 235 (613)
++-++|.||+|+|||++|+.||..++.+++..+.
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred CceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 3568999999999999999999999876665543
No 256
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.66 E-value=0.0071 Score=60.27 Aligned_cols=30 Identities=30% Similarity=0.380 Sum_probs=26.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCeeE
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAGVPFFY 232 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~~pfi~ 232 (613)
..+.|.||+|+||||+++.+|+.+|.+++.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 468899999999999999999999987653
No 257
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=95.65 E-value=0.11 Score=49.80 Aligned_cols=58 Identities=19% Similarity=0.186 Sum_probs=34.3
Q ss_pred CCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCC---CCCceEEEEccCCChHHHHHHHHHHh
Q 007190 166 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGG---KLPKGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 166 ~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~---~~p~gvLL~GPpGTGKT~LAralA~e 225 (613)
.+|+|+.-.++..+.|.+. -+..|..++.... ...+.+++.+|+|+|||..+-..+-+
T Consensus 14 ~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDC--GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHT--TCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHH
Confidence 4688886666666655441 1333433332110 01256999999999999876655543
No 258
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.64 E-value=0.02 Score=54.68 Aligned_cols=36 Identities=19% Similarity=0.166 Sum_probs=28.3
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecc
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGS 236 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s 236 (613)
.+.-+.|.||+|+|||++++.+++.+ +.+++..+..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 45568999999999999999999865 5666655433
No 259
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.61 E-value=0.028 Score=56.68 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=20.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e 225 (613)
.-+.|.||+|+|||||++++++-
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 45889999999999999999874
No 260
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.61 E-value=0.051 Score=55.61 Aligned_cols=58 Identities=16% Similarity=0.115 Sum_probs=33.7
Q ss_pred CCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCC----CCCceEEEEccCCChHHHHHHHHHHh
Q 007190 166 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGG----KLPKGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 166 ~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~----~~p~gvLL~GPpGTGKT~LAralA~e 225 (613)
.+|+++.-.+...+.|.+. -+..|..++.... ...+.+++.+|+|+|||+.+-..+-+
T Consensus 6 ~~f~~~~l~~~~~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~ 67 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNK--GFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE 67 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHH
T ss_pred CchhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHH
Confidence 4677776566665555542 1223322222110 11258999999999999886655443
No 261
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.60 E-value=0.022 Score=63.09 Aligned_cols=39 Identities=26% Similarity=0.370 Sum_probs=29.7
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcCC---CeeEeecchhh
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEAGV---PFFYRAGSEFE 239 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~~~---pfi~is~s~~~ 239 (613)
.|.-|+|+|.||+|||++++.++..++. +...++..++.
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r 75 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYR 75 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHH
Confidence 4567999999999999999999998854 44445554443
No 262
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.60 E-value=0.014 Score=61.95 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=20.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
.-+.|.||+|+|||||.|+|++-.
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHcCC
Confidence 347899999999999999999843
No 263
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.56 E-value=0.0071 Score=62.62 Aligned_cols=35 Identities=17% Similarity=0.144 Sum_probs=29.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCeeEeecc
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGS 236 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s 236 (613)
++-++|.||+|+|||+|+..+|...+.++++.+.-
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 34688999999999999999999988776665543
No 264
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.52 E-value=0.018 Score=55.21 Aligned_cols=70 Identities=14% Similarity=0.041 Sum_probs=41.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhh-------hhhhhhh-----HHHHHHHHHHHHcCCCeEEEE
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFE-------EMFVGVG-----ARRVRSLFQAAKKKAPCIIFI 267 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~-------~~~~g~~-----~~~vr~lf~~A~~~~P~ILfI 267 (613)
+-.+++||+|+|||+.+-.++.++ +..++.+...... ....|.. .....++++.+.. ...+|+|
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~-~~dvViI 87 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEE-DTEVIAI 87 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCCT-TCSEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHhc-cCCEEEE
Confidence 467899999999999888887765 5555544311100 0011110 0111345554432 3479999
Q ss_pred cCCCcc
Q 007190 268 DEIDAV 273 (613)
Q Consensus 268 DEiD~l 273 (613)
||++.+
T Consensus 88 DEaqfl 93 (191)
T 1xx6_A 88 DEVQFF 93 (191)
T ss_dssp CSGGGS
T ss_pred ECCCCC
Confidence 999887
No 265
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.51 E-value=0.053 Score=56.42 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=24.4
Q ss_pred CCCCceEEEEccCCChHHHHHHHHHHhc
Q 007190 199 GKLPKGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 199 ~~~p~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
...|.-+.|.||+|+||||+++.+|+..
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3467789999999999999999999865
No 266
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.49 E-value=0.034 Score=60.04 Aligned_cols=37 Identities=35% Similarity=0.351 Sum_probs=28.9
Q ss_pred CCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecc
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGS 236 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s 236 (613)
..|+.++++|+||+|||+++..+|..+ |..+..+++.
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 346789999999999999999999865 4555555543
No 267
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.48 E-value=0.037 Score=58.37 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=20.2
Q ss_pred eEEEEccCCChHHHHHHHHHHh
Q 007190 204 GILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e 225 (613)
-+.|.||+|+|||||.|+|++-
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 4789999999999999999984
No 268
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.46 E-value=0.0083 Score=56.91 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=22.9
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
.+.-+.|.||+|+||||+++.+++..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34568999999999999999999876
No 269
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.46 E-value=0.0085 Score=56.34 Aligned_cols=34 Identities=26% Similarity=0.378 Sum_probs=25.4
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeEeecchh
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEF 238 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s~~ 238 (613)
-+.|.||+|+||||+++.+++..+. .+.+++.++
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~~ 37 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDII 37 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC-eEEEcccch
Confidence 4789999999999999999986543 244444443
No 270
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.45 E-value=0.078 Score=54.13 Aligned_cols=35 Identities=29% Similarity=0.183 Sum_probs=27.1
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeec
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAG 235 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~ 235 (613)
.++.+.++||+|+|||++++.+|... +..+..+++
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 56678899999999999999999754 445554443
No 271
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.45 E-value=0.0061 Score=59.08 Aligned_cols=32 Identities=25% Similarity=0.385 Sum_probs=27.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCeeEee
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRA 234 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is 234 (613)
.++++|.||||+|||++|..++.+.+ +++..+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 46899999999999999999998866 666544
No 272
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.36 E-value=0.036 Score=57.48 Aligned_cols=39 Identities=26% Similarity=0.265 Sum_probs=30.6
Q ss_pred CCCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecch
Q 007190 199 GKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSE 237 (613)
Q Consensus 199 ~~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~ 237 (613)
...|+.++++||+|+|||+++..+|..+ +..+..+++.-
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4567789999999999999999998854 55666665543
No 273
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.36 E-value=0.0079 Score=57.55 Aligned_cols=32 Identities=38% Similarity=0.485 Sum_probs=26.1
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcC--CCeeE
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEAG--VPFFY 232 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~~--~pfi~ 232 (613)
.+.-+.|.||+|+||||+++.+++..+ +.++.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~ 38 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGERVALLP 38 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 345688999999999999999999877 44443
No 274
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.32 E-value=0.011 Score=57.12 Aligned_cols=29 Identities=28% Similarity=0.442 Sum_probs=27.3
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeE
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFY 232 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~ 232 (613)
-|.|.||+|||||++++.+|+.+|.||+-
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 68899999999999999999999999883
No 275
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.31 E-value=0.16 Score=54.79 Aligned_cols=73 Identities=19% Similarity=0.239 Sum_probs=47.3
Q ss_pred CCCceEEEEccCCChHHHHHHHHHHhc----CCCeeEeecchhhhhh----------hh----------hhHHHHHHHHH
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGSEFEEMF----------VG----------VGARRVRSLFQ 255 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~e~----~~pfi~is~s~~~~~~----------~g----------~~~~~vr~lf~ 255 (613)
..|+.++++|++|+|||+++-.+|..+ |..+..+++..+.... .+ .....++..+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 567889999999999999999998644 6667666665321110 00 01223356666
Q ss_pred HHHcCCCeEEEEcCCCc
Q 007190 256 AAKKKAPCIIFIDEIDA 272 (613)
Q Consensus 256 ~A~~~~P~ILfIDEiD~ 272 (613)
.++.....+++||=...
T Consensus 178 ~~~~~~~D~VIIDTpG~ 194 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGR 194 (433)
T ss_dssp HHHHTTCSEEEEECCCC
T ss_pred HHHhCCCCEEEEECCCc
Confidence 66644557999987543
No 276
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.31 E-value=0.034 Score=58.93 Aligned_cols=23 Identities=39% Similarity=0.543 Sum_probs=20.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e 225 (613)
.-+.|.||+|+|||||.|++|+-
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCChHHHHHHHHHcC
Confidence 35789999999999999999984
No 277
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.27 E-value=0.053 Score=59.48 Aligned_cols=28 Identities=39% Similarity=0.522 Sum_probs=24.0
Q ss_pred CCCCceEEEEccCCChHHHHHHHHHHhc
Q 007190 199 GKLPKGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 199 ~~~p~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
...+.-++|.||+|+||||+++.|++.+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 3456678999999999999999999865
No 278
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=95.22 E-value=0.11 Score=49.72 Aligned_cols=58 Identities=21% Similarity=0.185 Sum_probs=34.2
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcC---CCCCceEEEEccCCChHHHH-HHHHHH
Q 007190 165 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLG---GKLPKGILLTGAPGTGKTLL-AKAIAG 224 (613)
Q Consensus 165 ~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg---~~~p~gvLL~GPpGTGKT~L-AralA~ 224 (613)
..+|+++.-.+...+.+.+. -+..+..++... ....+.+++++|+|+|||.. +-.+..
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~ 74 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGY--GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQ 74 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHC--CCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHH
Confidence 45799987666666666542 133333332210 01125799999999999986 333333
No 279
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.20 E-value=0.011 Score=55.97 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=22.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
+.-+.|.||+|+||||+++.+++..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3458899999999999999999975
No 280
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.17 E-value=0.01 Score=63.40 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=28.6
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCeeEeec
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAG 235 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~ 235 (613)
++-++|.||+|+|||+|+..+|...+..++..+.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 3468899999999999999999999877665543
No 281
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.16 E-value=0.011 Score=55.80 Aligned_cols=25 Identities=36% Similarity=0.587 Sum_probs=22.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAG 227 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~ 227 (613)
+-+.|.||+|+||||+++.+++...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999998753
No 282
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.15 E-value=0.032 Score=58.73 Aligned_cols=23 Identities=39% Similarity=0.563 Sum_probs=20.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e 225 (613)
.-+.|.||+|+|||||.+++|+-
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 35789999999999999999984
No 283
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.13 E-value=0.092 Score=57.80 Aligned_cols=36 Identities=22% Similarity=0.200 Sum_probs=27.5
Q ss_pred CCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeec
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAG 235 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~ 235 (613)
..|+.|+++|+||+||||++..+|..+ |..+..+++
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 457789999999999999999999654 555655555
No 284
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.13 E-value=0.045 Score=58.85 Aligned_cols=50 Identities=20% Similarity=0.195 Sum_probs=34.1
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhcC
Q 007190 165 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAG 227 (613)
Q Consensus 165 ~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~~ 227 (613)
..+++++.-..+.+..|..++ .. ....++++||+|+||||+.+++++...
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l~---~~----------~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRLI---KR----------PHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHHH---TS----------SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CCCHHHcCCCHHHHHHHHHHH---Hh----------cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 456777754444444454442 11 112478999999999999999999764
No 285
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.11 E-value=0.011 Score=60.39 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=24.9
Q ss_pred CCCCceEEEEccCCChHHHHHHHHHHhcC
Q 007190 199 GKLPKGILLTGAPGTGKTLLAKAIAGEAG 227 (613)
Q Consensus 199 ~~~p~gvLL~GPpGTGKT~LAralA~e~~ 227 (613)
...|.-+.|.||+|+||||+++.+++.++
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34566789999999999999999998765
No 286
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.06 E-value=0.023 Score=55.48 Aligned_cols=31 Identities=10% Similarity=-0.123 Sum_probs=23.5
Q ss_pred eEEEEccCCChHHHHHHHHHHhc---CCCeeEee
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEA---GVPFFYRA 234 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~---~~pfi~is 234 (613)
-.+++||.|+|||+.+-.++..+ +..++.+.
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 35689999999999888887654 66665554
No 287
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.04 E-value=0.095 Score=59.35 Aligned_cols=49 Identities=27% Similarity=0.320 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecc
Q 007190 174 CDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGS 236 (613)
Q Consensus 174 ~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s 236 (613)
.++.++.+...+. . .| -.|+.||||||||+++-.+...+ +.+++.+..+
T Consensus 191 N~~Q~~AV~~al~---~----------~~-~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 191 DTSQKEAVLFALS---Q----------KE-LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp CHHHHHHHHHHHH---C----------SS-EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CHHHHHHHHHHhc---C----------CC-ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 5666666665542 1 11 47999999999997655544332 5566665544
No 288
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=94.98 E-value=0.05 Score=64.13 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=20.8
Q ss_pred CCceEEEEccCCChHHHHHHHHHH
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAG 224 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~ 224 (613)
....+.|.||.|+||||+.|.++.
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHH
Confidence 345689999999999999999974
No 289
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.90 E-value=0.03 Score=59.19 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e 225 (613)
.-+-|.||+|+|||||.|++++-
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHhcC
Confidence 35889999999999999999984
No 290
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=94.87 E-value=0.072 Score=61.76 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=19.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e 225 (613)
..++++||+|+|||+++..+..+
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999987777554
No 291
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.79 E-value=0.014 Score=55.81 Aligned_cols=25 Identities=36% Similarity=0.687 Sum_probs=22.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
++.+.|+||+|+|||||++.+++..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4568999999999999999999865
No 292
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=94.79 E-value=0.1 Score=50.54 Aligned_cols=53 Identities=21% Similarity=0.248 Sum_probs=31.3
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcC---CCCCceEEEEccCCChHHHHH
Q 007190 165 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLG---GKLPKGILLTGAPGTGKTLLA 219 (613)
Q Consensus 165 ~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg---~~~p~gvLL~GPpGTGKT~LA 219 (613)
..+|+++.-.+...+.|.+. .+..+..++... ....+.+++.+|+|+|||+.+
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEA--QYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAF 79 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHT--TCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHH
Confidence 45788887666666555432 123333332210 011257999999999999854
No 293
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.75 E-value=0.079 Score=54.22 Aligned_cols=35 Identities=34% Similarity=0.333 Sum_probs=28.5
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecc
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGS 236 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s 236 (613)
|.-+++.||+|+|||+++..+|..+ +..+..+++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 6788899999999999999998765 5666666654
No 294
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.74 E-value=0.013 Score=57.90 Aligned_cols=29 Identities=38% Similarity=0.613 Sum_probs=25.9
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeE
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFY 232 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~ 232 (613)
-+-|.||||+|||++|+.|+..++.+.+.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is 38 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIS 38 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEEC
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeee
Confidence 36789999999999999999999988764
No 295
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.61 E-value=0.039 Score=56.67 Aligned_cols=28 Identities=29% Similarity=0.351 Sum_probs=24.3
Q ss_pred CCCCceEEEEccCCChHHHHHHHHHHhc
Q 007190 199 GKLPKGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 199 ~~~p~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
...|.-+.|.||+|+||||+++.+|+..
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4456778999999999999999999865
No 296
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.60 E-value=0.019 Score=54.69 Aligned_cols=32 Identities=38% Similarity=0.583 Sum_probs=28.3
Q ss_pred EEEEccCCChHHHHHHHHHHhcCCCeeEeecch
Q 007190 205 ILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSE 237 (613)
Q Consensus 205 vLL~GPpGTGKT~LAralA~e~~~pfi~is~s~ 237 (613)
+|++|++|+|||++|..++.. +.|.+|+.-+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 789999999999999999988 88888887654
No 297
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.58 E-value=0.14 Score=53.52 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=22.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
+.-+.|+|+||+|||+++.+++..+
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999998764
No 298
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.57 E-value=0.054 Score=60.66 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=33.1
Q ss_pred CCCceEEEEccCCChHHHHHHHHHHhcC----CCeeEeecchhh
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAGEAG----VPFFYRAGSEFE 239 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~e~~----~pfi~is~s~~~ 239 (613)
..|..|+|+|+||+|||++|++|+..++ .+++.++...+.
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir 437 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVR 437 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHH
Confidence 3456789999999999999999999875 788888765543
No 299
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.53 E-value=0.014 Score=64.36 Aligned_cols=70 Identities=20% Similarity=0.273 Sum_probs=43.3
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcC--CCeeEeecch-hhhh---h--------hhhhHHHHHHHHHHHHcCCCeEEEE
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEAG--VPFFYRAGSE-FEEM---F--------VGVGARRVRSLFQAAKKKAPCIIFI 267 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~~--~pfi~is~s~-~~~~---~--------~g~~~~~vr~lf~~A~~~~P~ILfI 267 (613)
+.++++.||+|+||||+++++++... ...+.+.... +.-. + .+...-.+.++...+....|.++++
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iiv 339 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIV 339 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEe
Confidence 34699999999999999999998763 2244443321 1100 0 0111112345555555678999999
Q ss_pred cCCC
Q 007190 268 DEID 271 (613)
Q Consensus 268 DEiD 271 (613)
+|+-
T Consensus 340 gEir 343 (511)
T 2oap_1 340 GEVR 343 (511)
T ss_dssp SCCC
T ss_pred CCcC
Confidence 9974
No 300
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.46 E-value=0.018 Score=56.13 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=16.0
Q ss_pred CceEEEEccCCChHHHHHHHHH-Hhc
Q 007190 202 PKGILLTGAPGTGKTLLAKAIA-GEA 226 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA-~e~ 226 (613)
..-+.|.||+|+||||+++.++ +..
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3468899999999999999999 764
No 301
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=94.43 E-value=0.11 Score=50.69 Aligned_cols=55 Identities=16% Similarity=0.179 Sum_probs=30.4
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcC---CCCCceEEEEccCCChHHHHHH
Q 007190 164 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLG---GKLPKGILLTGAPGTGKTLLAK 220 (613)
Q Consensus 164 ~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg---~~~p~gvLL~GPpGTGKT~LAr 220 (613)
+..+|+++.-.+...+.+.+. .+..|..++... ....+.+++.+|+|+|||+..-
T Consensus 27 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 27 PVLNFYEANFPANVMDVIARQ--NFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp CCSSTTTTTCCHHHHHHHHTT--TCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHH
T ss_pred ccCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHH
Confidence 345687775555554444331 123332222210 0012579999999999998643
No 302
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.34 E-value=0.022 Score=55.29 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.3
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
..-+.|.||+|+|||||++.+++..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3458899999999999999999976
No 303
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.33 E-value=0.48 Score=50.95 Aligned_cols=35 Identities=29% Similarity=0.183 Sum_probs=27.7
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeec
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAG 235 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~ 235 (613)
.|..++++||+|+|||+++..+|..+ +..+..+++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 56788999999999999999999865 445555544
No 304
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.32 E-value=0.021 Score=56.31 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=24.1
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCC
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEAGVP 229 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~~~p 229 (613)
+.-+-|.||+|+||||+++.+++.+|..
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 3457899999999999999999987754
No 305
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=94.32 E-value=0.14 Score=49.91 Aligned_cols=55 Identities=18% Similarity=0.197 Sum_probs=32.2
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcC---CCCCceEEEEccCCChHHHHHH
Q 007190 164 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLG---GKLPKGILLTGAPGTGKTLLAK 220 (613)
Q Consensus 164 ~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg---~~~p~gvLL~GPpGTGKT~LAr 220 (613)
+..+|+++.=.++..+.|.+. -+..|..++... ....+.+++++|+|+|||..+-
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~ 85 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYAY--GFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFA 85 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHH
Confidence 345799986556655555431 133343333211 0112579999999999997643
No 306
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=94.31 E-value=0.29 Score=50.48 Aligned_cols=55 Identities=22% Similarity=0.353 Sum_probs=31.0
Q ss_pred CCCcccCCCHHHHHHHHHHHHHhcCchhhhh-----cCCCCCceEEEEccCCChHHHHHHHH
Q 007190 166 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTR-----LGGKLPKGILLTGAPGTGKTLLAKAI 222 (613)
Q Consensus 166 ~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~-----lg~~~p~gvLL~GPpGTGKT~LAral 222 (613)
.+|+++.=.++..+.|.+. -+..|..++. +-...++.+++.+|+|+|||+.+-..
T Consensus 5 ~~f~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~ 64 (395)
T 3pey_A 5 KSFDELGLAPELLKGIYAM--KFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLT 64 (395)
T ss_dssp CSSTTSCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHH
T ss_pred cCHhhCCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHH
Confidence 4577765555555544431 1223322222 11123478999999999999865543
No 307
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.31 E-value=0.013 Score=55.98 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=21.8
Q ss_pred eEEEEccCCChHHHHHHHHHHhcC
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAG 227 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~ 227 (613)
-|.|.||+|+||||+++.|++.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999874
No 308
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=94.29 E-value=0.41 Score=49.40 Aligned_cols=57 Identities=19% Similarity=0.208 Sum_probs=32.1
Q ss_pred CCCcccCCCHHHHHHHHHHHHHhcCchhhhhcC---CCCCceEEEEccCCChHHHHHHHHHH
Q 007190 166 KTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLG---GKLPKGILLTGAPGTGKTLLAKAIAG 224 (613)
Q Consensus 166 ~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg---~~~p~gvLL~GPpGTGKT~LAralA~ 224 (613)
.+|+++.=.+...+.|.+. -+..+..++... ....+.+++.+|+|+|||+.+-..+-
T Consensus 8 ~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~ 67 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDC--GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL 67 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHH--SCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHH
T ss_pred CChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHH
Confidence 3577776556655555442 133333332211 01125799999999999987654443
No 309
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.29 E-value=0.076 Score=55.06 Aligned_cols=29 Identities=21% Similarity=0.297 Sum_probs=25.0
Q ss_pred CCCCceEEEEccCCChHHHHHHHHHHhcC
Q 007190 199 GKLPKGILLTGAPGTGKTLLAKAIAGEAG 227 (613)
Q Consensus 199 ~~~p~gvLL~GPpGTGKT~LAralA~e~~ 227 (613)
.+.|.-+.|.||+|+||||+++.+++..+
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34566789999999999999999998764
No 310
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.24 E-value=0.025 Score=55.62 Aligned_cols=30 Identities=27% Similarity=0.453 Sum_probs=27.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCeeE
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAGVPFFY 232 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~~pfi~ 232 (613)
.-|.+.|++|||||++++.||+.+|.+|+.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 368899999999999999999999999864
No 311
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.19 E-value=0.03 Score=53.01 Aligned_cols=28 Identities=32% Similarity=0.563 Sum_probs=23.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCee
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAGVPFF 231 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~~pfi 231 (613)
+|+||.||+|+|||++|.++... |..++
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r-G~~lv 44 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR-GHQLV 44 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT-TCEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc-CCeEe
Confidence 68999999999999999999874 54443
No 312
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.14 E-value=0.033 Score=51.66 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=22.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
.-+.|.||.|+|||+|+|++++..
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458899999999999999999986
No 313
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=94.13 E-value=0.17 Score=53.42 Aligned_cols=33 Identities=33% Similarity=0.343 Sum_probs=25.5
Q ss_pred eEEEEccCCChHHHHHHHHHHhc----CCCeeEeecc
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGS 236 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~----~~pfi~is~s 236 (613)
++++..|+|+|||+.+-.++... +.+++.+...
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~ 61 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPT 61 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 69999999999999888886654 5566655543
No 314
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.12 E-value=0.054 Score=57.08 Aligned_cols=28 Identities=29% Similarity=0.351 Sum_probs=24.5
Q ss_pred CCCCceEEEEccCCChHHHHHHHHHHhc
Q 007190 199 GKLPKGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 199 ~~~p~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
...|.-+.|.||+|+||||+++.+|+..
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4456779999999999999999999865
No 315
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.06 E-value=0.18 Score=49.80 Aligned_cols=91 Identities=16% Similarity=0.036 Sum_probs=49.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecc-------hhhhhhhhhh-----HHHHHHHHHHHHcCCCeEEEE
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGS-------EFEEMFVGVG-----ARRVRSLFQAAKKKAPCIIFI 267 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s-------~~~~~~~g~~-----~~~vr~lf~~A~~~~P~ILfI 267 (613)
+-.+++||.|+|||+.+-..+..+ |..++.+... .+.+. .|.. .....+++..+ ....+|+|
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr-~G~~~~a~~i~~~~di~~~~--~~~dvViI 96 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTH-DRNTMEALPACLLRDVAQEA--LGVAVIGI 96 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHH--TTCSEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhh-cCCeeEEEecCCHHHHHHHh--ccCCEEEE
Confidence 457889999999997666665433 5555444311 11111 0110 00112345444 33569999
Q ss_pred cCCCccccCCccCCcccHHHHHHHHHHhhccccCCceEEEeecCC
Q 007190 268 DEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNL 312 (613)
Q Consensus 268 DEiD~l~~~r~~~~~~~~~~l~~LL~~ldg~~~~~~ViVIaaTN~ 312 (613)
||++.+. . +.+++..++. .++.||++.-+
T Consensus 97 DEaQF~~----------~--v~el~~~l~~----~gi~VI~~GL~ 125 (234)
T 2orv_A 97 DEGQFFP----------D--IVEFCEAMAN----AGKTVIVAALD 125 (234)
T ss_dssp SSGGGCT----------T--HHHHHHHHHH----TTCEEEEECCS
T ss_pred Echhhhh----------h--HHHHHHHHHh----CCCEEEEEecc
Confidence 9999882 1 5566666664 34556666443
No 316
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.04 E-value=0.02 Score=58.37 Aligned_cols=37 Identities=22% Similarity=0.262 Sum_probs=25.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcC---CCeeEeecchh
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEAG---VPFFYRAGSEF 238 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~~---~pfi~is~s~~ 238 (613)
+.-|.|.||+|+||||+++.++..++ ..+..++..++
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 34688999999999999999998765 34445555444
No 317
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=94.02 E-value=0.21 Score=47.06 Aligned_cols=18 Identities=33% Similarity=0.355 Sum_probs=15.4
Q ss_pred ceEEEEccCCChHHHHHH
Q 007190 203 KGILLTGAPGTGKTLLAK 220 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAr 220 (613)
+.+++++|+|+|||..+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 579999999999997544
No 318
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.01 E-value=0.031 Score=53.53 Aligned_cols=25 Identities=16% Similarity=0.429 Sum_probs=22.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAG 227 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~ 227 (613)
.-+.|.||+|+|||||++++++...
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999999763
No 319
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.01 E-value=0.12 Score=61.08 Aligned_cols=22 Identities=18% Similarity=0.138 Sum_probs=19.6
Q ss_pred ceEEEEccCCChHHHHHHHHHH
Q 007190 203 KGILLTGAPGTGKTLLAKAIAG 224 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~ 224 (613)
.-++|+||.|+|||++.|.++.
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999954
No 320
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.00 E-value=0.11 Score=56.20 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=20.1
Q ss_pred CceEEEEccCCChHHHHHHHHHHh
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e 225 (613)
.+-.++.|+||||||++.+.++..
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCCT
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcc
Confidence 356789999999999999888753
No 321
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.99 E-value=0.12 Score=56.12 Aligned_cols=30 Identities=27% Similarity=0.378 Sum_probs=25.3
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcCCCe
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEAGVPF 230 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~~~pf 230 (613)
.|..|+|+|.||+|||++++.++..++.++
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 456799999999999999999999875433
No 322
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.93 E-value=0.035 Score=54.49 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=25.7
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcC--CCeeE
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEAG--VPFFY 232 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~~--~pfi~ 232 (613)
+.-+.|.||||+||||+++.+++.++ .+++.
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~ 58 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIM 58 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 45688999999999999999999886 45543
No 323
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.85 E-value=0.037 Score=57.06 Aligned_cols=29 Identities=24% Similarity=0.392 Sum_probs=24.3
Q ss_pred CCCCceEEEEccCCChHHHHHHHHHHhcC
Q 007190 199 GKLPKGILLTGAPGTGKTLLAKAIAGEAG 227 (613)
Q Consensus 199 ~~~p~gvLL~GPpGTGKT~LAralA~e~~ 227 (613)
.++...+.|+||+|+|||+|++.|++-..
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence 33445689999999999999999999763
No 324
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=93.84 E-value=0.22 Score=47.69 Aligned_cols=18 Identities=28% Similarity=0.294 Sum_probs=15.4
Q ss_pred ceEEEEccCCChHHHHHH
Q 007190 203 KGILLTGAPGTGKTLLAK 220 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAr 220 (613)
+.+++.+|+|+|||..+-
T Consensus 42 ~~~lv~a~TGsGKT~~~~ 59 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYL 59 (219)
T ss_dssp CCEEEECCSSHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 579999999999998643
No 325
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=93.76 E-value=0.3 Score=50.85 Aligned_cols=57 Identities=23% Similarity=0.161 Sum_probs=32.6
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCC---CCCceEEEEccCCChHHHHHHHHH
Q 007190 165 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGG---KLPKGILLTGAPGTGKTLLAKAIA 223 (613)
Q Consensus 165 ~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~---~~p~gvLL~GPpGTGKT~LAralA 223 (613)
..+|+++.-.++..+.|.+. -+..|..++.... ...+.+++.+|+|+|||+.+-..+
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFEA--GFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHH
Confidence 45799987666665555431 1233333322110 012469999999999998654443
No 326
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=93.74 E-value=0.16 Score=50.03 Aligned_cols=55 Identities=24% Similarity=0.206 Sum_probs=32.0
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcC---CCCCceEEEEccCCChHHHHHH
Q 007190 164 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLG---GKLPKGILLTGAPGTGKTLLAK 220 (613)
Q Consensus 164 ~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg---~~~p~gvLL~GPpGTGKT~LAr 220 (613)
+..+|+++.-.+...+.|.+. -+..+..++... ....+.+++.+|+|+|||+.+-
T Consensus 41 ~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 41 ETKTFKDLGVTDVLCEACDQL--GWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp HHCCTGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred ccCCHHHcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhH
Confidence 346799986666655555431 123333332211 0112679999999999998643
No 327
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.71 E-value=0.037 Score=56.74 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=23.4
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcC
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEAG 227 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~~ 227 (613)
.+.-+-|.||+|+||||+++.+++..+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345688999999999999999999765
No 328
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.71 E-value=0.037 Score=54.06 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=22.7
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcC
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEAG 227 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~~ 227 (613)
..-+.|.||+|+|||||.+++++...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 34588999999999999999999764
No 329
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.60 E-value=0.066 Score=49.76 Aligned_cols=47 Identities=19% Similarity=0.284 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHHHHhcCchhhhhcCCCCCceEEEEccCCChHHHHHHHHHHhc
Q 007190 174 CDDAKQELVEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 174 ~~e~k~~L~eiv~~l~~p~~~~~lg~~~p~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
....++++.+++..+... ....+..+++.|++|+|||+|..++.+..
T Consensus 26 ~~~l~~~l~~~~~~~~~~------~~~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 26 ISQWREWIDEKLGGGSGG------GGSYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CHHHHHHHHHHC--------------CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhhcCC------CCCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345555555544332221 12334479999999999999999998754
No 330
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.50 E-value=0.045 Score=51.59 Aligned_cols=26 Identities=27% Similarity=0.279 Sum_probs=22.3
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
...-+.|.||+|+|||++++.+.+.+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 34578999999999999999998864
No 331
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.49 E-value=0.046 Score=57.53 Aligned_cols=69 Identities=22% Similarity=0.335 Sum_probs=42.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCC--CeeEeecc-hhh-----hh--hh-------hh-hHHHHHHHHHHHHcCCCeE
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAGV--PFFYRAGS-EFE-----EM--FV-------GV-GARRVRSLFQAAKKKAPCI 264 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~~--pfi~is~s-~~~-----~~--~~-------g~-~~~~vr~lf~~A~~~~P~I 264 (613)
..++|+||+|+||||+++++++.... -.+.+... ++. .. ++ +. ....+++.+..+....|..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~ 255 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTR 255 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCE
Confidence 46999999999999999999986532 23333221 110 00 00 10 1223556666677778889
Q ss_pred EEEcCCC
Q 007190 265 IFIDEID 271 (613)
Q Consensus 265 LfIDEiD 271 (613)
++++|+.
T Consensus 256 ~l~~e~r 262 (361)
T 2gza_A 256 ILLAELR 262 (361)
T ss_dssp EEESCCC
T ss_pred EEEcCch
Confidence 9998875
No 332
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=93.42 E-value=0.2 Score=58.31 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=21.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHh
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e 225 (613)
...+.|+||.|+|||++.|.++.-
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 356899999999999999999873
No 333
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.40 E-value=0.12 Score=57.50 Aligned_cols=39 Identities=26% Similarity=0.284 Sum_probs=30.2
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcC----CCeeEeecchhh
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEAG----VPFFYRAGSEFE 239 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~~----~pfi~is~s~~~ 239 (613)
.+..+.|.|++|+||||++++|++.++ .++..+++..+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~ 410 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVR 410 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHH
Confidence 345688999999999999999999874 345556666553
No 334
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=93.37 E-value=0.25 Score=51.68 Aligned_cols=57 Identities=18% Similarity=0.183 Sum_probs=33.2
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCC---CCCceEEEEccCCChHHHHHHHHH
Q 007190 165 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGG---KLPKGILLTGAPGTGKTLLAKAIA 223 (613)
Q Consensus 165 ~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~---~~p~gvLL~GPpGTGKT~LAralA 223 (613)
..+|+++.=.++..+.|.+. -+..|..++.... ...+.+++.+|+|+|||+.+-..+
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~ 95 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAY--GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISV 95 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHH
Confidence 35799976666666555432 1333333322110 112569999999999997655443
No 335
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.36 E-value=0.051 Score=53.27 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=23.5
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcC
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEAG 227 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~~ 227 (613)
|+-+.|.|++|+||||+++.++..++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45689999999999999999999983
No 336
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=93.24 E-value=0.2 Score=50.51 Aligned_cols=33 Identities=21% Similarity=0.226 Sum_probs=25.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcCCCeeEeec
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAG 235 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~~pfi~is~ 235 (613)
+.+++.+|+|+|||+.+-..+-+.+...+.+..
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P 64 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPILELGMKSLVVTP 64 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTCCEEEECS
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeC
Confidence 469999999999999777766666666555543
No 337
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.23 E-value=0.022 Score=56.72 Aligned_cols=31 Identities=16% Similarity=0.164 Sum_probs=25.7
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc-CCCee
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEA-GVPFF 231 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~-~~pfi 231 (613)
.+.-|.|.|++|+||||+++.|++.+ +.+++
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 45678999999999999999999988 44443
No 338
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.17 E-value=0.055 Score=55.61 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=23.2
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
.|.-+.|.||+|+||||+++.+|+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46679999999999999999999865
No 339
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.13 E-value=0.42 Score=58.63 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=23.1
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcC
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEAG 227 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~~ 227 (613)
+..-+.|+||+|+|||++++.+.+...
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred CCcEEEEEecCCCcHHHHHHHhccccc
Confidence 345689999999999999999998653
No 340
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.99 E-value=0.17 Score=52.59 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=21.5
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
..-+.|.||||+|||+|.+++++..
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 3458899999999999999999754
No 341
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=92.97 E-value=0.21 Score=48.56 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=20.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e 225 (613)
..|+|.|++|+|||+|..++.+.
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 46999999999999999999874
No 342
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=92.97 E-value=0.3 Score=50.50 Aligned_cols=54 Identities=20% Similarity=0.180 Sum_probs=31.6
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcCC---CCCceEEEEccCCChHHHHH
Q 007190 164 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLGG---KLPKGILLTGAPGTGKTLLA 219 (613)
Q Consensus 164 ~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg~---~~p~gvLL~GPpGTGKT~LA 219 (613)
...+|+++.=.+...+.|... -+..+..++.... ...+.+++.+|+|+|||+.+
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 19 VVYKFDDMELDENLLRGVFGY--GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTF 75 (394)
T ss_dssp CCCSSGGGCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHH
Confidence 345799986666665555442 1333333322110 01256999999999999874
No 343
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.96 E-value=0.059 Score=55.61 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=23.2
Q ss_pred CCCceEEEEccCCChHHHHHHHHHHhc
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
..+.-+.|.||+|+|||||++.|++..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 345568899999999999999999865
No 344
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=92.95 E-value=0.59 Score=50.27 Aligned_cols=54 Identities=24% Similarity=0.377 Sum_probs=33.1
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHHhcCchhhhh-----cCCCCCceEEEEccCCChHHHHH
Q 007190 164 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTR-----LGGKLPKGILLTGAPGTGKTLLA 219 (613)
Q Consensus 164 ~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~-----lg~~~p~gvLL~GPpGTGKT~LA 219 (613)
...+|+++.-.++..+.|.+. -+..|..++. +-...++.+|+++|+|+|||..+
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~~--g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYAM--GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHH
T ss_pred CcCCHHHcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHH
Confidence 345788887667666555431 1233322221 11224578999999999999864
No 345
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.90 E-value=0.18 Score=54.80 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=20.3
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~ 226 (613)
.++|+||||+|||+|+..++...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhh
Confidence 58999999999999999987653
No 346
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=92.85 E-value=0.57 Score=48.78 Aligned_cols=55 Identities=18% Similarity=0.233 Sum_probs=31.5
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHhcCchhhhhcC---CCCCceEEEEccCCChHHHHHHH
Q 007190 165 VKTFKDVKGCDDAKQELVEVVEYLKNPSKFTRLG---GKLPKGILLTGAPGTGKTLLAKA 221 (613)
Q Consensus 165 ~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~lg---~~~p~gvLL~GPpGTGKT~LAra 221 (613)
..+|+++.=.+...+.|.+. -+..+..++... ....+.+++.+|+|+|||+.+-.
T Consensus 39 ~~~f~~~~l~~~~~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~ 96 (414)
T 3eiq_A 39 VDSFDDMNLSESLLRGIYAY--GFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAI 96 (414)
T ss_dssp CCCGGGGCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHH
T ss_pred hcCHhhCCCCHHHHHHHHHc--CCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHH
Confidence 34688876666665555431 133333222211 01124699999999999987433
No 347
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=92.83 E-value=0.47 Score=49.27 Aligned_cols=54 Identities=24% Similarity=0.377 Sum_probs=33.2
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHHhcCchhhhh-----cCCCCCceEEEEccCCChHHHHH
Q 007190 164 NVKTFKDVKGCDDAKQELVEVVEYLKNPSKFTR-----LGGKLPKGILLTGAPGTGKTLLA 219 (613)
Q Consensus 164 ~~~~f~dV~G~~e~k~~L~eiv~~l~~p~~~~~-----lg~~~p~gvLL~GPpGTGKT~LA 219 (613)
...+|+++.=.+...+.|.+. -+..|..++. +-...++.+++.+|+|+|||+.+
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 23 SVKSFEELRLKPQLLQGVYAM--GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp CSSCTGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred ccCCHhhCCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 445788887666666555441 1333333322 11123468999999999999875
No 348
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=92.83 E-value=0.12 Score=49.71 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=15.3
Q ss_pred ceEEEEccCCChHHHHHH
Q 007190 203 KGILLTGAPGTGKTLLAK 220 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAr 220 (613)
+.+++.+|+|+|||..+-
T Consensus 58 ~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 58 IDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 579999999999997543
No 349
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.82 E-value=0.25 Score=54.85 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
.-+-|.||.|+|||||++++++..
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999999843
No 350
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=92.80 E-value=0.25 Score=56.24 Aligned_cols=32 Identities=41% Similarity=0.504 Sum_probs=21.6
Q ss_pred ceEEEEccCCChHHHHHHHH-HHhc--CCCeeEee
Q 007190 203 KGILLTGAPGTGKTLLAKAI-AGEA--GVPFFYRA 234 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAral-A~e~--~~pfi~is 234 (613)
+.+++++|+|+|||+.+-.. .... +...+++.
T Consensus 41 ~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~ 75 (702)
T 2p6r_A 41 KNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVV 75 (702)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEe
Confidence 47999999999999987433 2222 44455444
No 351
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.78 E-value=0.066 Score=50.32 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=21.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
+-+.|.|++|+|||+++..++..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 468999999999999999998864
No 352
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=92.73 E-value=0.14 Score=55.03 Aligned_cols=33 Identities=24% Similarity=0.222 Sum_probs=28.3
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeEeecc
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGS 236 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~is~s 236 (613)
.+++++|+|+|||..+-.++...+.+.+.+...
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 599999999999999988888888777776654
No 353
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=92.54 E-value=0.53 Score=51.12 Aligned_cols=33 Identities=24% Similarity=0.386 Sum_probs=23.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc--------CCCeeEeec
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA--------GVPFFYRAG 235 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~--------~~pfi~is~ 235 (613)
+.+++++|+|+|||..+-..+.+. +...+.+..
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P 63 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLAT 63 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECS
T ss_pred CCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeC
Confidence 369999999999998876665433 445555544
No 354
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.49 E-value=0.074 Score=47.83 Aligned_cols=21 Identities=52% Similarity=0.926 Sum_probs=19.1
Q ss_pred eEEEEccCCChHHHHHHHHHH
Q 007190 204 GILLTGAPGTGKTLLAKAIAG 224 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~ 224 (613)
-+++.|+||+|||+|.+++.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 489999999999999999964
No 355
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=92.45 E-value=0.21 Score=55.46 Aligned_cols=39 Identities=26% Similarity=0.289 Sum_probs=30.8
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc---CCCeeEeecchhh
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYRAGSEFE 239 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~is~s~~~ 239 (613)
.+..++|+|+||+|||++++.++..+ |.++..+++..+.
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir 412 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVR 412 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhh
Confidence 35678999999999999999999876 4567777765543
No 356
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=92.41 E-value=0.82 Score=49.43 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=23.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc--------CCCeeEeec
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA--------GVPFFYRAG 235 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~--------~~pfi~is~ 235 (613)
+.+++.+|+|+|||..+-..+-+. +...+.+..
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P 60 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFAN 60 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeC
Confidence 469999999999998866665443 555555544
No 357
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=92.41 E-value=0.11 Score=50.94 Aligned_cols=68 Identities=16% Similarity=0.136 Sum_probs=35.5
Q ss_pred eEEEEccCCChHHH-HHHHHHH--hcCCCeeEeecchhhhhh--------hhhh-----HHHHHHHHHHHHcCCCeEEEE
Q 007190 204 GILLTGAPGTGKTL-LAKAIAG--EAGVPFFYRAGSEFEEMF--------VGVG-----ARRVRSLFQAAKKKAPCIIFI 267 (613)
Q Consensus 204 gvLL~GPpGTGKT~-LAralA~--e~~~pfi~is~s~~~~~~--------~g~~-----~~~vr~lf~~A~~~~P~ILfI 267 (613)
-.+++||.|+|||+ |.+.+-+ ..+..++.+.... ...| .|.. .....+++... .....+|+|
T Consensus 30 I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~-D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~~i-~~~~dvV~I 107 (219)
T 3e2i_A 30 IECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAI-DDRYHKEKVVSHNGNAIEAINISKASEIMTHD-LTNVDVIGI 107 (219)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC------------CBTTBCCEEEEESSGGGGGGSC-CTTCSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEecc-CCcchhhhHHHhcCCceeeEEeCCHHHHHHHH-hcCCCEEEE
Confidence 46889999999999 5555432 3355554443211 0110 1100 01112233222 234679999
Q ss_pred cCCCcc
Q 007190 268 DEIDAV 273 (613)
Q Consensus 268 DEiD~l 273 (613)
||++-+
T Consensus 108 DEaQFf 113 (219)
T 3e2i_A 108 DEVQFF 113 (219)
T ss_dssp CCGGGS
T ss_pred echhcC
Confidence 999988
No 358
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.30 E-value=0.086 Score=48.91 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=21.5
Q ss_pred eEEEEccCCChHHHHHHHHHHhcC
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAG 227 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~ 227 (613)
-.+|+||.|+|||++++||+.-++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 578999999999999999988665
No 359
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=92.29 E-value=0.46 Score=54.13 Aligned_cols=21 Identities=43% Similarity=0.602 Sum_probs=17.7
Q ss_pred CceEEEEccCCChHHHHHHHH
Q 007190 202 PKGILLTGAPGTGKTLLAKAI 222 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAral 222 (613)
.+.++++||+|+|||+.+-..
T Consensus 46 ~~~~lv~apTGsGKT~~~~l~ 66 (715)
T 2va8_A 46 GNRLLLTSPTGSGKTLIAEMG 66 (715)
T ss_dssp TCCEEEECCTTSCHHHHHHHH
T ss_pred CCcEEEEcCCCCcHHHHHHHH
Confidence 568999999999999988433
No 360
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=92.22 E-value=0.27 Score=56.82 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=21.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHh
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e 225 (613)
...+.|+||.|+|||++.|.++.-
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 346899999999999999999873
No 361
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=92.19 E-value=0.26 Score=48.95 Aligned_cols=18 Identities=33% Similarity=0.519 Sum_probs=15.3
Q ss_pred ceEEEEccCCChHHHHHH
Q 007190 203 KGILLTGAPGTGKTLLAK 220 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAr 220 (613)
+.+++++|+|+|||..+-
T Consensus 92 ~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCCEECCCTTSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHH
Confidence 469999999999998644
No 362
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=92.18 E-value=0.23 Score=48.94 Aligned_cols=25 Identities=28% Similarity=0.599 Sum_probs=21.6
Q ss_pred CCceEEEEccCCChHHHHHHHHHHh
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e 225 (613)
.+..|+|.|+||+|||+|..++.+.
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCcHHHHHHHHhCC
Confidence 3457999999999999999999764
No 363
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.14 E-value=0.09 Score=57.95 Aligned_cols=27 Identities=15% Similarity=0.037 Sum_probs=24.5
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCC
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEAGV 228 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~~~ 228 (613)
+..|.|.|++|+||||++++||+.++.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 457999999999999999999999874
No 364
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=92.11 E-value=0.49 Score=54.04 Aligned_cols=18 Identities=39% Similarity=0.536 Sum_probs=16.4
Q ss_pred CceEEEEccCCChHHHHH
Q 007190 202 PKGILLTGAPGTGKTLLA 219 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LA 219 (613)
.+.++++||+|+|||+.+
T Consensus 39 ~~~~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIA 56 (720)
T ss_dssp TCEEEEECCGGGCHHHHH
T ss_pred CCcEEEEcCCccHHHHHH
Confidence 468999999999999887
No 365
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.11 E-value=0.076 Score=47.69 Aligned_cols=23 Identities=13% Similarity=0.264 Sum_probs=20.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e 225 (613)
..+++.|++|+|||+|+.++.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999874
No 366
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.09 E-value=0.076 Score=49.85 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.9
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~ 226 (613)
-+.|.||+|+|||+|.+.+++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999854
No 367
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=92.08 E-value=0.25 Score=54.91 Aligned_cols=23 Identities=48% Similarity=0.507 Sum_probs=19.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e 225 (613)
+.+|+++|+|+|||..+-.++..
T Consensus 199 ~~~ll~~~TGsGKT~~~~~~~~~ 221 (590)
T 3h1t_A 199 KRSLITMATGTGKTVVAFQISWK 221 (590)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEecCCCChHHHHHHHHHH
Confidence 46899999999999998777664
No 368
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.07 E-value=0.077 Score=49.95 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=20.5
Q ss_pred eEEEEccCCChHHHHHHHHHHh
Q 007190 204 GILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e 225 (613)
-+.|.||+|+|||+|.+.+++.
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999985
No 369
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.07 E-value=0.054 Score=52.48 Aligned_cols=22 Identities=41% Similarity=0.434 Sum_probs=20.2
Q ss_pred eEEEEccCCChHHHHHHHHHHh
Q 007190 204 GILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e 225 (613)
-+.|.||.|+|||||++++++.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999985
No 370
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.05 E-value=0.4 Score=47.55 Aligned_cols=25 Identities=28% Similarity=0.515 Sum_probs=21.9
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
+..|++.|++|+|||+|..++.+.-
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999998753
No 371
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.02 E-value=0.054 Score=52.98 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
.-+.|.||+|+|||||.+.+++-.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999998754
No 372
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.99 E-value=0.065 Score=53.10 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=21.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
.-+.|.||+|+|||||.+.+++-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 568899999999999999999854
No 373
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.98 E-value=0.48 Score=43.87 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=21.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
--|+|.|++|+|||+|+..+.+..
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 359999999999999999998754
No 374
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=91.96 E-value=0.086 Score=51.33 Aligned_cols=29 Identities=38% Similarity=0.497 Sum_probs=26.0
Q ss_pred eEEEEccCCChHHHHHHHHHHhcCCCeeEe
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEAGVPFFYR 233 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~~~pfi~i 233 (613)
.|-|+|..|||||++++.++. .|.|++..
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vida 39 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDT 39 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEEC
Confidence 688999999999999999988 89888753
No 375
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.94 E-value=0.074 Score=49.39 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=21.7
Q ss_pred CCceEEEEccCCChHHHHHHHHHHh
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e 225 (613)
.+..+++.|++|+|||+|..++.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999764
No 376
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.94 E-value=0.34 Score=50.24 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=22.1
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
.+..+.|.|+||+|||+++.+++...
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999998754
No 377
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.88 E-value=0.071 Score=52.56 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=21.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
.-+.|.||+|+|||||.+.+++-.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 458899999999999999999754
No 378
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=91.85 E-value=0.084 Score=53.22 Aligned_cols=23 Identities=26% Similarity=0.523 Sum_probs=21.1
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~ 226 (613)
.+.|.||+|+|||||.+++++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999865
No 379
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.83 E-value=0.1 Score=49.56 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=22.1
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
+..++|.|++|+|||+|+.++.+..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3469999999999999999999864
No 380
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.82 E-value=0.073 Score=52.56 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=21.6
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
..-+.|.||+|+|||||++.+++..
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458899999999999999999853
No 381
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.79 E-value=0.15 Score=49.53 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=25.4
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CCCeeEe
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEA---GVPFFYR 233 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~---~~pfi~i 233 (613)
++-|.|.||+|+||||+++.++..+ +.+++.+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 3457889999999999999999876 4555544
No 382
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.78 E-value=0.069 Score=50.14 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=22.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAG 227 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~ 227 (613)
+.+.|+||+|+|||||++.+++...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3688999999999999999998753
No 383
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=91.72 E-value=0.13 Score=54.14 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=16.2
Q ss_pred ceEEEEccCCChHHHHHHHH
Q 007190 203 KGILLTGAPGTGKTLLAKAI 222 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAral 222 (613)
+.+++++|+|+|||+.+-..
T Consensus 37 ~~~lv~apTGsGKT~~~l~~ 56 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMT 56 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHH
Confidence 47999999999999854444
No 384
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.71 E-value=0.093 Score=46.80 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=20.2
Q ss_pred eEEEEccCCChHHHHHHHHHHh
Q 007190 204 GILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e 225 (613)
.+++.|++|+|||+|+..+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
No 385
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.63 E-value=0.52 Score=52.72 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=22.1
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
+..-+.|+||+|+|||||++.+++..
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 33568899999999999999998854
No 386
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.52 E-value=0.096 Score=54.86 Aligned_cols=28 Identities=21% Similarity=0.405 Sum_probs=24.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCC
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEAGVP 229 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~~~p 229 (613)
..-+.|.||+|+|||||++.+++....+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3468999999999999999999976543
No 387
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.40 E-value=0.071 Score=51.93 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=21.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
.-+.|.||.|+|||||.+++++-.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358899999999999999998854
No 388
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.32 E-value=0.11 Score=46.26 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.8
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~ 226 (613)
.+++.|++|+|||+|+.++.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
No 389
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=91.31 E-value=0.52 Score=50.45 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=16.9
Q ss_pred ceEEEEccCCChHHHHH-HHHH
Q 007190 203 KGILLTGAPGTGKTLLA-KAIA 223 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LA-ralA 223 (613)
+.+|++||+|+|||+.+ .++.
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l 24 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLV 24 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 47999999999999875 4443
No 390
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=91.27 E-value=0.11 Score=46.34 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=21.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
..|++.|+||+|||+|..++.+..
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 359999999999999999998743
No 391
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.24 E-value=0.09 Score=52.74 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
.-+.|.||.|+|||||.+++++-.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999999854
No 392
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=91.22 E-value=0.093 Score=59.21 Aligned_cols=33 Identities=36% Similarity=0.446 Sum_probs=23.8
Q ss_pred eEEEEccCCChHHHHHHHHHHhc----CCCeeEeecc
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEA----GVPFFYRAGS 236 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~----~~pfi~is~s 236 (613)
..++.||||||||+++..++..+ +.+++.+..+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~t 233 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS 233 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESS
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 58999999999999887776643 3455554443
No 393
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.21 E-value=0.088 Score=52.34 Aligned_cols=23 Identities=39% Similarity=0.616 Sum_probs=20.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e 225 (613)
.-+.|.||.|+|||||.+.+++-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999999985
No 394
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.19 E-value=0.075 Score=53.08 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=21.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
.-+.|.||.|+|||||.+.+++-.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999999854
No 395
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.19 E-value=0.18 Score=48.03 Aligned_cols=25 Identities=36% Similarity=0.530 Sum_probs=22.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhcC
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEAG 227 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~~ 227 (613)
..+++.|++|+|||+|+..++....
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4799999999999999999998753
No 396
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.18 E-value=0.089 Score=52.06 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=21.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
.-+.|.||+|+|||||.+.+++-.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 458899999999999999998754
No 397
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.16 E-value=0.15 Score=50.14 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=18.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
+-|.|.||+|+||||+++.++..+
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 457889999999999999999876
No 398
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=91.12 E-value=0.2 Score=48.76 Aligned_cols=29 Identities=28% Similarity=0.220 Sum_probs=25.1
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCe
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEAGVPF 230 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~~~pf 230 (613)
++-|.|.|++|+|||++++.++..++.+.
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~~~ 33 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQPNC 33 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCSSE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 35688999999999999999999987643
No 399
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=91.08 E-value=0.13 Score=50.89 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=22.7
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
.++-|.|.||+|+|||++++.++..+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999999866
No 400
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=91.06 E-value=0.11 Score=46.28 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=20.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e 225 (613)
..+++.|++|+|||+|++++.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999874
No 401
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.04 E-value=0.08 Score=52.32 Aligned_cols=24 Identities=46% Similarity=0.540 Sum_probs=21.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
.-+.|.||.|+|||||.+.+++-.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999999854
No 402
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.03 E-value=0.46 Score=53.23 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=22.3
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhc
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
+..-+.|.||+|+|||||++.+++..
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 34568999999999999999998844
No 403
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.00 E-value=0.11 Score=52.10 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e 225 (613)
.-+.|.||.|+|||||++.+++-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999999985
No 404
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.00 E-value=0.098 Score=52.39 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=21.8
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
..-+.|.||+|+|||||++.+++-.
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3458899999999999999999854
No 405
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.99 E-value=0.12 Score=46.30 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=20.6
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~ 226 (613)
.+++.|++|+|||+|..++.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 59999999999999999998743
No 406
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.99 E-value=0.081 Score=52.57 Aligned_cols=24 Identities=33% Similarity=0.392 Sum_probs=21.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
.-+.|.||+|+|||||++.+++-.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 458899999999999999998854
No 407
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.98 E-value=0.081 Score=53.59 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
.-+.|.||.|+|||||++++++-.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 358899999999999999999854
No 408
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.97 E-value=0.082 Score=51.84 Aligned_cols=24 Identities=38% Similarity=0.547 Sum_probs=21.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
.-+.|.||.|+|||||.+.+++..
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458899999999999999999854
No 409
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=90.89 E-value=0.13 Score=46.31 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
..+++.|++|+|||+|.+++.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 369999999999999999998754
No 410
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=90.89 E-value=0.12 Score=46.32 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.2
Q ss_pred eEEEEccCCChHHHHHHHHHHh
Q 007190 204 GILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e 225 (613)
.|++.|++|+|||+|..++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 411
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.80 E-value=0.1 Score=52.38 Aligned_cols=24 Identities=17% Similarity=0.400 Sum_probs=21.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
.-+.|.||.|+|||||++.+++-.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCC
Confidence 458899999999999999999854
No 412
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=90.75 E-value=0.79 Score=50.05 Aligned_cols=19 Identities=32% Similarity=0.501 Sum_probs=16.2
Q ss_pred CceEEEEccCCChHHHHHH
Q 007190 202 PKGILLTGAPGTGKTLLAK 220 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAr 220 (613)
++.+++++|+|+|||+.+-
T Consensus 158 ~~~~ll~apTGsGKT~~~~ 176 (508)
T 3fho_A 158 PRNMIGQSQSGTGKTAAFA 176 (508)
T ss_dssp CCCEEEECCSSTTSHHHHH
T ss_pred CCCEEEECCCCccHHHHHH
Confidence 4689999999999998643
No 413
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.75 E-value=0.11 Score=52.49 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=21.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
.-+.|.||+|+|||||++.+++-.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 458899999999999999999864
No 414
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.73 E-value=0.12 Score=46.90 Aligned_cols=22 Identities=41% Similarity=0.712 Sum_probs=20.0
Q ss_pred eEEEEccCCChHHHHHHHHHHh
Q 007190 204 GILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e 225 (613)
-+.|.|+||+|||+|.+.+++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999863
No 415
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=90.72 E-value=0.13 Score=46.68 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e 225 (613)
..|++.|++|+|||+|..++.+.
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999864
No 416
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.70 E-value=0.1 Score=48.37 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=19.5
Q ss_pred eEEEEccCCChHHHHHHHHHH
Q 007190 204 GILLTGAPGTGKTLLAKAIAG 224 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~ 224 (613)
-++|.|+||+|||+|++.+++
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999986
No 417
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=90.69 E-value=0.13 Score=46.23 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=20.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e 225 (613)
..+++.|++|+|||+|.+++.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999875
No 418
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.68 E-value=0.09 Score=52.40 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=21.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
.-+.|.||.|+|||||.+.+++-.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 358899999999999999999864
No 419
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=90.65 E-value=0.25 Score=47.16 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=21.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
.-+++.|++|+|||+|+..++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 468888999999999999999875
No 420
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=90.65 E-value=0.47 Score=52.93 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=21.7
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
..-+.|+||+|+|||||++.+++..
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCC
Confidence 3458899999999999999998854
No 421
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=90.64 E-value=0.13 Score=46.58 Aligned_cols=23 Identities=48% Similarity=0.749 Sum_probs=20.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e 225 (613)
..|++.|+||+|||+|.+.+.+.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 36999999999999999999763
No 422
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.64 E-value=0.15 Score=47.61 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=21.5
Q ss_pred CceEEEEccCCChHHHHHHHHHHh
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e 225 (613)
...|++.|++|+|||+|+..+.+.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999875
No 423
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=90.63 E-value=0.17 Score=45.62 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHh
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e 225 (613)
+..+++.|++|+|||+|..++.+.
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999999764
No 424
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=90.62 E-value=0.13 Score=46.75 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHh
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e 225 (613)
+..|++.|++|+|||+|+..+.+.
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999874
No 425
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=90.59 E-value=0.15 Score=46.39 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=21.1
Q ss_pred CceEEEEccCCChHHHHHHHHHHh
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e 225 (613)
+..|++.|++|+|||+|..++.+.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346999999999999999999763
No 426
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=90.59 E-value=0.11 Score=54.91 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=20.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
.-+.|.||+|+|||||.|++|+-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 347899999999999999999843
No 427
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=90.57 E-value=0.15 Score=47.88 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=21.4
Q ss_pred CCceEEEEccCCChHHHHHHHHHHh
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e 225 (613)
.+..|++.|++|+|||+|+.++.+.
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3457999999999999999999864
No 428
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=90.57 E-value=0.11 Score=54.82 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=21.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
.-+.|.||+|+|||||.+.+|+-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHCCC
Confidence 357899999999999999999843
No 429
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=90.56 E-value=0.16 Score=49.85 Aligned_cols=27 Identities=26% Similarity=0.224 Sum_probs=23.0
Q ss_pred CCceEEEEccCCChHHHHHHHHHHhcC
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGEAG 227 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e~~ 227 (613)
.++-|.|.|++|+|||++++.+++.++
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 455688899999999999999998654
No 430
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=90.55 E-value=0.35 Score=53.20 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=17.0
Q ss_pred ceEEEEccCCChHHHHHHHHHH
Q 007190 203 KGILLTGAPGTGKTLLAKAIAG 224 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~ 224 (613)
+.+|+.+|+|+|||+.+..-+-
T Consensus 41 ~d~lv~apTGsGKTl~~~lp~l 62 (523)
T 1oyw_A 41 RDCLVVMPTGGGKSLCYQIPAL 62 (523)
T ss_dssp CCEEEECSCHHHHHHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHHHH
Confidence 4699999999999985544433
No 431
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.53 E-value=0.093 Score=53.19 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
.-+.|.||.|+|||||.+.+++-.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 358899999999999999999854
No 432
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=90.53 E-value=0.14 Score=45.85 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e 225 (613)
..|++.|++|+|||+|..++.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999873
No 433
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.49 E-value=0.095 Score=54.95 Aligned_cols=24 Identities=38% Similarity=0.571 Sum_probs=21.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
.-+.|.||+|+|||||.|.+|+-.
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCccHHHHHHHHHcCC
Confidence 357899999999999999999843
No 434
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=90.48 E-value=0.18 Score=47.12 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=21.3
Q ss_pred CCCceEEEEccCCChHHHHHHHHHH
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAG 224 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~ 224 (613)
+....|++.|++|+|||+|+..+..
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 3445799999999999999999964
No 435
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=90.48 E-value=0.13 Score=47.33 Aligned_cols=23 Identities=35% Similarity=0.693 Sum_probs=20.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e 225 (613)
.-+.|.|+||+|||+|.+++++.
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999875
No 436
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=90.48 E-value=0.14 Score=45.73 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=20.3
Q ss_pred eEEEEccCCChHHHHHHHHHHh
Q 007190 204 GILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e 225 (613)
.+++.|++|+|||+|.+++.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 437
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.45 E-value=0.12 Score=51.76 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=21.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
.-+.|.||.|+|||||.+.+++-.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 458899999999999999999854
No 438
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=90.44 E-value=0.55 Score=50.93 Aligned_cols=33 Identities=12% Similarity=0.095 Sum_probs=23.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc---C-CCeeEeec
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA---G-VPFFYRAG 235 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~---~-~pfi~is~ 235 (613)
+.+|++||+|+|||..+-.++... + .+++.+..
T Consensus 129 ~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P 165 (510)
T 2oca_A 129 RRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVP 165 (510)
T ss_dssp SEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEES
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 368999999999999987666542 3 25555544
No 439
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=90.44 E-value=0.47 Score=50.51 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=21.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
.-++|.||||+|||+|++.+++..
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHHH
Confidence 459999999999999999998753
No 440
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.44 E-value=0.12 Score=51.95 Aligned_cols=24 Identities=33% Similarity=0.624 Sum_probs=21.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
.-+.|.||.|+|||||.+.+++-.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 458899999999999999998854
No 441
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=90.43 E-value=0.13 Score=49.62 Aligned_cols=40 Identities=23% Similarity=0.303 Sum_probs=29.5
Q ss_pred CCCCCceEEEEccCCChHHHHHHHHHHhcCCC-eeEeecch
Q 007190 198 GGKLPKGILLTGAPGTGKTLLAKAIAGEAGVP-FFYRAGSE 237 (613)
Q Consensus 198 g~~~p~gvLL~GPpGTGKT~LAralA~e~~~p-fi~is~s~ 237 (613)
+..|++-|+|+|.||+||+++|+.+.+..+.. +..++.++
T Consensus 7 ~~~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD 47 (202)
T 3ch4_B 7 GGAPRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSG 47 (202)
T ss_dssp BCCCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHH
T ss_pred ccCCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccH
Confidence 34566789999999999999999998877532 33344444
No 442
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.38 E-value=0.12 Score=46.33 Aligned_cols=22 Identities=27% Similarity=0.370 Sum_probs=20.1
Q ss_pred eEEEEccCCChHHHHHHHHHHh
Q 007190 204 GILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e 225 (613)
.|++.|++|+|||+|..++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 443
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=90.32 E-value=0.11 Score=54.83 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=21.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
.-+.|.||+|+|||||.|.+|+-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCcHHHHHHHHHHcCC
Confidence 357899999999999999999843
No 444
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.32 E-value=0.1 Score=52.11 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
.-+.|.||.|+|||||.+.+++-.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458899999999999999999854
No 445
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=90.32 E-value=0.15 Score=45.61 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=19.9
Q ss_pred eEEEEccCCChHHHHHHHHHHh
Q 007190 204 GILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e 225 (613)
.+++.|++|+|||+|...+.+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999999864
No 446
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.31 E-value=0.13 Score=47.51 Aligned_cols=23 Identities=39% Similarity=0.651 Sum_probs=20.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e 225 (613)
.-+.|.|++|+|||+|.+++++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999873
No 447
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=90.31 E-value=0.15 Score=46.85 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e 225 (613)
..|++.|++|+|||+|+.++.+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999874
No 448
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=90.24 E-value=1.2 Score=51.46 Aligned_cols=33 Identities=24% Similarity=0.386 Sum_probs=24.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc--------CCCeeEeec
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA--------GVPFFYRAG 235 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~--------~~pfi~is~ 235 (613)
+.+++++|+|+|||..+-..+... +.+.+.+..
T Consensus 264 ~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~P 304 (797)
T 4a2q_A 264 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLAT 304 (797)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeC
Confidence 469999999999998876665543 555565544
No 449
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=90.21 E-value=0.15 Score=45.95 Aligned_cols=21 Identities=38% Similarity=0.737 Sum_probs=19.1
Q ss_pred eEEEEccCCChHHHHHHHHHH
Q 007190 204 GILLTGAPGTGKTLLAKAIAG 224 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~ 224 (613)
-+++.|+||+|||+|+..+.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999964
No 450
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=90.21 E-value=0.15 Score=46.12 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e 225 (613)
..|++.|++|+|||+|+.++.+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999864
No 451
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=90.16 E-value=1.1 Score=43.24 Aligned_cols=17 Identities=35% Similarity=0.604 Sum_probs=14.9
Q ss_pred ceEEEEccCCChHHHHH
Q 007190 203 KGILLTGAPGTGKTLLA 219 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LA 219 (613)
+.+++.+|+|+|||+.+
T Consensus 67 ~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAF 83 (245)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 56999999999999864
No 452
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.16 E-value=0.17 Score=46.32 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=21.4
Q ss_pred CCCceEEEEccCCChHHHHHHHHHH
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAG 224 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~ 224 (613)
+.+..|++.|++|+|||+|...+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3456799999999999999999874
No 453
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.08 E-value=0.17 Score=47.58 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=21.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHh
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e 225 (613)
...|++.|++|+|||+|..++.+.
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999864
No 454
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.07 E-value=0.11 Score=52.26 Aligned_cols=24 Identities=38% Similarity=0.670 Sum_probs=21.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
.-+.|.||.|+|||||.+.+++..
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999999865
No 455
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=90.07 E-value=0.15 Score=46.42 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=20.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e 225 (613)
..+++.|+||+|||+|+.++.+.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 46999999999999999999753
No 456
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=90.03 E-value=0.19 Score=46.37 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=21.5
Q ss_pred CceEEEEccCCChHHHHHHHHHHh
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e 225 (613)
+.-|++.|++|+|||+|+.++.+.
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999885
No 457
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=89.99 E-value=0.17 Score=45.90 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=21.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
..+++.|++|+|||+|++++.+..
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999998743
No 458
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=89.95 E-value=0.17 Score=45.99 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=21.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e 225 (613)
..+++.|++|+|||+|.+++.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999875
No 459
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=89.92 E-value=0.58 Score=51.90 Aligned_cols=17 Identities=29% Similarity=0.528 Sum_probs=15.1
Q ss_pred CceEEEEccCCChHHHH
Q 007190 202 PKGILLTGAPGTGKTLL 218 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~L 218 (613)
.+.+++.+|+|+|||+.
T Consensus 60 ~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 60 DHDVIARAKTGTGKTFA 76 (579)
T ss_dssp SEEEEEECCTTSCHHHH
T ss_pred CCeEEEEcCCCcHHHHH
Confidence 46899999999999984
No 460
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=89.88 E-value=0.096 Score=55.00 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=20.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e 225 (613)
.-+.|.||+|+|||||.+.+|+-
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 35789999999999999999984
No 461
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=89.83 E-value=0.2 Score=51.79 Aligned_cols=29 Identities=31% Similarity=0.495 Sum_probs=24.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCee
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEAGVPFF 231 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~~~pfi 231 (613)
.+|++|.|++|+|||++|.++.+. |..++
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv 172 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHRLV 172 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence 368999999999999999999875 54444
No 462
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=89.79 E-value=0.17 Score=46.36 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e 225 (613)
..|++.|++|+|||+|++++.+.
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999874
No 463
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=89.78 E-value=0.17 Score=46.79 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e 225 (613)
.-+++.|++|+|||+|++.+.+.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999875
No 464
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=89.77 E-value=0.17 Score=46.68 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=21.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
..|++.|++|+|||+|+.++++..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 369999999999999999998753
No 465
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=89.73 E-value=1.1 Score=53.49 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=19.7
Q ss_pred CceEEEEccCCChHHHHHHHHH
Q 007190 202 PKGILLTGAPGTGKTLLAKAIA 223 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA 223 (613)
...++|+||.|+|||++.|.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 3579999999999999999993
No 466
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=89.73 E-value=0.18 Score=46.05 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=20.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e 225 (613)
..|++.|++|+|||+|++++.+.
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 36999999999999999999874
No 467
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=89.71 E-value=0.18 Score=46.85 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=20.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e 225 (613)
..|++.|++|+|||+|..++.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 36999999999999999999874
No 468
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=89.70 E-value=0.18 Score=46.56 Aligned_cols=24 Identities=29% Similarity=0.166 Sum_probs=21.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
.-|++.|+||+|||+|++.+.+..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 369999999999999999888754
No 469
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=89.68 E-value=0.18 Score=45.95 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e 225 (613)
..|++.|++|+|||+|..++.+.
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999874
No 470
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=89.68 E-value=0.16 Score=46.57 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=21.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
..|++.|++|+|||+|..++.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 369999999999999999998743
No 471
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=89.64 E-value=0.63 Score=55.23 Aligned_cols=41 Identities=22% Similarity=0.326 Sum_probs=29.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc---CC--CeeEeecchhhhhh
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEA---GV--PFFYRAGSEFEEMF 242 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~---~~--pfi~is~s~~~~~~ 242 (613)
+.++||.+|.|+|||..|-+++.++ +. +++.+....+...|
T Consensus 170 ~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~sLl~Qw 215 (968)
T 3dmq_A 170 APRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQW 215 (968)
T ss_dssp SCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCTTTHHHH
T ss_pred CCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCHHHHHHH
Confidence 4579999999999999988877653 32 55655555554443
No 472
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=89.64 E-value=0.14 Score=54.54 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e 225 (613)
.-+.|.||+|+|||||.++|++-
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCChHHHHHHHHhCC
Confidence 45889999999999999999973
No 473
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.62 E-value=0.18 Score=49.02 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=21.3
Q ss_pred CceEEEEccCCChHHHHHHHHHHh
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e 225 (613)
+.-+.|.||.|+||||+++.+++.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 345789999999999999999987
No 474
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.49 E-value=0.34 Score=47.44 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=26.0
Q ss_pred CCCceEEEEccCCChHHHHHHHHHHhc--CCCeeEee
Q 007190 200 KLPKGILLTGAPGTGKTLLAKAIAGEA--GVPFFYRA 234 (613)
Q Consensus 200 ~~p~gvLL~GPpGTGKT~LAralA~e~--~~pfi~is 234 (613)
..+..+++.|.+|+|||+++..+|..+ +..+..++
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 344578999999999999999998654 44444343
No 475
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=89.47 E-value=0.19 Score=51.85 Aligned_cols=29 Identities=34% Similarity=0.478 Sum_probs=23.7
Q ss_pred CceEEEEccCCChHHHHHHHHHHhcCCCee
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEAGVPFF 231 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~~~pfi 231 (613)
.+|+||.||+|+|||++|.++.. .|..++
T Consensus 147 g~gvli~G~sG~GKStlal~l~~-~G~~lv 175 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN-KNHLFV 175 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT-TTCEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH-cCCEEE
Confidence 47899999999999999999865 455544
No 476
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=89.45 E-value=0.19 Score=45.97 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=20.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e 225 (613)
..|++.|++|+|||+|.+.+.+.
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 477
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=89.41 E-value=0.17 Score=45.89 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.9
Q ss_pred ceEEEEccCCChHHHHHHHHHH
Q 007190 203 KGILLTGAPGTGKTLLAKAIAG 224 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~ 224 (613)
..|++.|++|+|||+|+.++.+
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999965
No 478
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=89.37 E-value=0.16 Score=58.97 Aligned_cols=22 Identities=41% Similarity=0.588 Sum_probs=18.8
Q ss_pred eEEEEccCCChHHHHHHHHHHh
Q 007190 204 GILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e 225 (613)
..++.||||||||+++..++..
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~ 394 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYH 394 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 5799999999999988877664
No 479
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.27 E-value=0.2 Score=45.52 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=21.6
Q ss_pred CceEEEEccCCChHHHHHHHHHHhc
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
+..|++.|++|+|||+|..++.+..
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 3469999999999999999998743
No 480
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=89.23 E-value=0.2 Score=45.81 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e 225 (613)
..|++.|++|+|||+|+.++.+.
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999875
No 481
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=89.22 E-value=0.21 Score=45.98 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=21.8
Q ss_pred CCceEEEEccCCChHHHHHHHHHHh
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e 225 (613)
.+..+++.|++|+|||+|...+.+.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4457999999999999999999864
No 482
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=89.18 E-value=0.16 Score=46.87 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=20.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e 225 (613)
.-+++.|++|+|||+|..++.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999875
No 483
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=89.17 E-value=0.22 Score=46.47 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e 225 (613)
.-+++.|+||+|||+|.+.+.+.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999873
No 484
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=89.15 E-value=0.18 Score=54.82 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=21.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
.-+.|.||.|+|||||+|.+++-.
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCcc
Confidence 458999999999999999999854
No 485
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=89.10 E-value=0.25 Score=44.96 Aligned_cols=24 Identities=21% Similarity=0.160 Sum_probs=21.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHh
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e 225 (613)
+..+++.|++|+|||+|...+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999999864
No 486
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=89.10 E-value=0.21 Score=46.24 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
..|++.|++|+|||+|..++.+..
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 369999999999999999998753
No 487
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=89.08 E-value=1.7 Score=51.37 Aligned_cols=33 Identities=24% Similarity=0.386 Sum_probs=25.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc--------CCCeeEeec
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA--------GVPFFYRAG 235 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~--------~~pfi~is~ 235 (613)
+.+++.+|+|+|||..+-..+.+. +.+.+.+..
T Consensus 264 ~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~P 304 (936)
T 4a2w_A 264 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLAT 304 (936)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECS
T ss_pred CCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeC
Confidence 469999999999999877776654 555665554
No 488
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=89.07 E-value=0.2 Score=46.06 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=19.9
Q ss_pred eEEEEccCCChHHHHHHHHHHh
Q 007190 204 GILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e 225 (613)
.|++.|++|+|||+|...+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4899999999999999999864
No 489
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=88.98 E-value=0.18 Score=51.48 Aligned_cols=24 Identities=38% Similarity=0.547 Sum_probs=21.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
.-+.|.||.|+|||||.+.+++-.
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 458899999999999999998853
No 490
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=88.97 E-value=0.34 Score=49.75 Aligned_cols=23 Identities=48% Similarity=0.553 Sum_probs=20.8
Q ss_pred eEEEEccCCChHHHHHHHHHHhc
Q 007190 204 GILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e~ 226 (613)
-++|.|+.|+||||+.+.+.+..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 57899999999999999999764
No 491
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=88.95 E-value=0.22 Score=46.09 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
..|++.|++|+|||+|+.++.+..
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999998743
No 492
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=88.93 E-value=0.21 Score=48.49 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
+-|.|.|++|+||||+++.++..+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 458899999999999999999866
No 493
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=88.92 E-value=1.2 Score=46.26 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=21.8
Q ss_pred CCceEEEEccCCChHHHHHHHHHHh
Q 007190 201 LPKGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 201 ~p~gvLL~GPpGTGKT~LAralA~e 225 (613)
.+..+++.|+||+|||+|..++++.
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999874
No 494
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=88.88 E-value=0.84 Score=43.06 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=20.1
Q ss_pred eEEEEccCCChHHHHHHHHHHh
Q 007190 204 GILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e 225 (613)
.|+|.|++|+|||+|..++.+.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999999863
No 495
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=88.83 E-value=0.36 Score=50.85 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHh
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e 225 (613)
..++++.||+|+|||++++.++..
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHHHH
Confidence 347999999999999999998764
No 496
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=88.81 E-value=0.28 Score=45.27 Aligned_cols=24 Identities=46% Similarity=0.545 Sum_probs=21.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHh
Q 007190 202 PKGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 202 p~gvLL~GPpGTGKT~LAralA~e 225 (613)
+.-+++.|++|+|||+|.+.+.+.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 456999999999999999999764
No 497
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=88.78 E-value=0.27 Score=52.67 Aligned_cols=22 Identities=27% Similarity=0.596 Sum_probs=20.3
Q ss_pred eEEEEccCCChHHHHHHHHHHh
Q 007190 204 GILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 204 gvLL~GPpGTGKT~LAralA~e 225 (613)
-+.|.||+|+|||||.+++++.
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999999984
No 498
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=88.77 E-value=0.22 Score=46.30 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=21.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHhc
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGEA 226 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e~ 226 (613)
..|++.|++|+|||+|..++.+..
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 369999999999999999998743
No 499
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=88.76 E-value=0.23 Score=45.82 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e 225 (613)
..|++.|++|+|||+|+.++.+.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999875
No 500
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=88.74 E-value=0.18 Score=45.94 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=20.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHh
Q 007190 203 KGILLTGAPGTGKTLLAKAIAGE 225 (613)
Q Consensus 203 ~gvLL~GPpGTGKT~LAralA~e 225 (613)
.-+++.|++|+|||+|+..+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45999999999999999999874
Done!