BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007191
(613 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C658|DCP5_ARATH Protein decapping 5 OS=Arabidopsis thaliana GN=DCP5 PE=1 SV=1
Length = 611
Score = 390 bits (1002), Expect = e-107, Method: Compositional matrix adjust.
Identities = 280/599 (46%), Positives = 333/599 (55%), Gaps = 87/599 (14%)
Query: 11 SSSSGSADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVP 69
S SS +ADSY+GSLISLTSKSEIRYEG+L+NINT+ESSIGL+N R +G +K GPQVP
Sbjct: 8 SKSSSAADSYVGSLISLTSKSEIRYEGILYNINTDESSIGLQNVRSFGTEGRKKDGPQVP 67
Query: 70 PSDKIYEYILFRGSDIKHCLLTITGDAISGPRLSQTRDWTLRSVIRKDIQDLQVKSSPPV 129
PSDK+YEYILFRG+DIK DLQVK+SPPV
Sbjct: 68 PSDKVYEYILFRGTDIK---------------------------------DLQVKASPPV 94
Query: 130 Q-TTTSIHNDPAIIQSHYSQAAIASTTLPS-GTGSLPDPTSQTSQLGLSRPPFQGNPPLY 187
Q ++I+NDPAIIQSHY S +LPS +GSLPD +S Q G FQ PLY
Sbjct: 95 QPPASTINNDPAIIQSHYPSPMPTSGSLPSTASGSLPDISSHNGQPGQHGMGFQNAMPLY 154
Query: 188 QPGGSLGAWGSSPMPTTNGAGLAMPMYWQGFYG-SPNGL-QGQQQPLLQPPPGLSMLPSM 245
QPGG+LG+WG+SP P PMYWQGFY PNGL Q QQ L++PP GL M S+
Sbjct: 155 QPGGNLGSWGASPQP---------PMYWQGFYTPPPNGLPQLHQQSLIRPPHGLPMPNSL 205
Query: 246 QQSMQYPAMNPSLPTGVSNLPASQLAEHRPPLMPPISTGTLNLLSPMLP----------- 294
QQ +QYP N P S+ P + P ST + L LP
Sbjct: 206 QQPLQYPNFNTPPPPTGSSSLQGSSLPEAPSSLFPFSTSSQMLAPSSLPFPGLPPVTLSS 265
Query: 295 --------AQSSAMISDSSTNLIPDKASTQTLPTAAPSTSLPLVPPLNSGIDKTAVAPVS 346
A S ++ S+ + L+ +KA PT T+L L+ + T S
Sbjct: 266 SLQSTLQSAPSPSLASEMAPPLLSNKAPITAPPTLPQDTNL-----LSFSLSTTRATEAS 320
Query: 347 -------EPKSVPGPIMPFQSTVSESVSTVGMSSSILNDGIMPSLVTPGQLLQPGLPAVS 399
+P V GPI P Q+T S G+SSSI D P LVTPGQLLQ G AVS
Sbjct: 321 TGLPLSNKPSVVTGPISPPQTTPLTSAPVAGVSSSISQDKPKPLLVTPGQLLQSGSSAVS 380
Query: 400 SSQSSQAAQKDVEVVQLSSSES-AAAPPPASDVQEPILPLPSTTE--RKPYGAPTSTQYG 456
S S A KDVEVVQ+SSS + P S+ Q PILPLPS+ +KP G G
Sbjct: 381 LSPPSTNADKDVEVVQVSSSAGLEQSVPVTSEAQPPILPLPSSARPTQKPNGHSFPNHNG 440
Query: 457 YRGGRGRGRGRGNELSRSATRFTEDFDFIAMNEKFNKDEVWGHLGKSNKALDDGDNYEDE 516
YRG S +FTEDFDF AMNEKFNKDEVWGHLGKS DGD +D
Sbjct: 441 YRGRGRGRGRGAGR-SHQVMKFTEDFDFTAMNEKFNKDEVWGHLGKSTTL--DGDEDDDS 497
Query: 517 EDVGSS---KHENKPVYVKDDFFDSLSCDALNRGSHNGRPRFSEQVRRDTETFGDFPRY 572
V + K E KPVY KDDFFDSLS + ++R S N RPRFSEQ + DTETFG+F R+
Sbjct: 498 PTVDEAELPKIEAKPVYNKDDFFDSLSSNTIDRESQNSRPRFSEQRKLDTETFGEFSRF 556
>sp|Q9FH77|DCP5L_ARATH Decapping 5-like protein OS=Arabidopsis thaliana GN=DCP5-L PE=2
SV=1
Length = 571
Score = 99.4 bits (246), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 109/225 (48%), Gaps = 67/225 (29%)
Query: 18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYE 76
D++IGS ISL SK EIRYEG+L+++N ++S++GL+N R +G +K GPQ+PP DK+Y+
Sbjct: 31 DTFIGSFISLISKYEIRYEGILYHLNVQDSTLGLKNVRSCGTEGRKKDGPQIPPCDKVYD 90
Query: 77 YILFRGSDIKHCLLTITGDAISGPRLSQTRDWTLRSVIRKDIQDLQVKSSPPVQTTTSIH 136
YILFRGSDIK DLQV SP Q+ I
Sbjct: 91 YILFRGSDIK---------------------------------DLQVNPSPSAQSRQEIQ 117
Query: 137 NDPAIIQSHYSQAAIASTTLPSG------------------TGSLPDPTSQTSQLGLSRP 178
++ + QS +S+ A+ ++ SG S P P +Q S + LS
Sbjct: 118 SEQDVNQSPHSRPAMTMSSPISGYDSGYGLGRGSQWINTPALSSKPVPVTQHSSVPLSFQ 177
Query: 179 PFQGNPPLYQPGGSLGAWGSSPM----PTTNGAGLAMPM--YWQG 217
P P + G+ SP+ T + AG +MP+ + QG
Sbjct: 178 P---------PSANAGSLTESPVSLIDSTQSNAGSSMPIPSFVQG 213
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 71/117 (60%), Gaps = 6/117 (5%)
Query: 474 SATRFTEDFDFIAMNEKFNKDEVWGHLGKSNKALDDGDNYEDEEDVGSSKHENKPVYVKD 533
S+ +TE+FDF AMNEKF K E+WG+LG++N+ N EE E KP Y KD
Sbjct: 423 SSIEYTEEFDFEAMNEKFKKSELWGYLGRNNQR---NQNDYGEETAIEPNAEGKPAYNKD 479
Query: 534 DFFDSLSCDALNRGSHNGRP--RFSEQVRRDTETFG-DFPRYHGGRGGRGPYRGGRS 587
DFFD++SC+ L+R + +G+ +F E +R+ E FG +F R + G+G Y ++
Sbjct: 480 DFFDTISCNQLDRVARSGQQHNQFPEHMRQVPEAFGNNFQRPPPLQPGQGAYLAAQT 536
>sp|Q9HGL3|SUM2_SCHPO Protein sum2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sum2 PE=2 SV=1
Length = 426
Score = 80.5 bits (197), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 103/360 (28%), Positives = 154/360 (42%), Gaps = 88/360 (24%)
Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGP--QVPPSDKIYEY 77
+IGS ISL SKS+IRY G+L +IN+++S++ L++ R K P ++PPSD +++Y
Sbjct: 4 FIGSRISLISKSDIRYVGILQDINSQDSTLALKHVRWCGTEGRKQDPSQEIPPSDNVFDY 63
Query: 78 ILFRGSDIKHCLLTITGDAISGPRLSQTRDWTLRSVIRKDIQDLQVKSSPPVQTTTSIHN 137
I+FRGSD+K + + S+PPVQ N
Sbjct: 64 IVFRGSDVKDLRIE---------------------------EPATTPSAPPVQPP----N 92
Query: 138 DPAII-----QSHYSQAAIASTTLPSGTGSLPDPTSQTSQLGLSRPPFQGNPPLYQPGGS 192
DPAII Q +++QA A P P Q G + P + P G
Sbjct: 93 DPAIIGSNSGQYNWNQAQTAQPPQPVQPNPYGAPYQQAPPAGAPYYMYPNAPAQFVPPGG 152
Query: 193 LGAWGSSPMPT-TNGAGLAMPMYWQGFYGSPNGLQGQQQPLL----------QPP----P 237
L P+ T + + A+P +YG+P+ Q Q+P Q P P
Sbjct: 153 L------PLGTPLDASTPAVP-----YYGAPDQQQMGQRPEFAQNVSQGFAGQAPYNVRP 201
Query: 238 GLSMLPSMQQSMQY-PAMNPSLPTGVSNLPASQLAEHRPPLMPPISTGTLNLLSPMLPA- 295
G M PS Q+ + P M PT VS P+ Q MPP + G + P + A
Sbjct: 202 GYGM-PSNQKPPNFAPGMPAPGPTAVSASPSLQ-------SMPP-TNGVIPGAQPSIEAS 252
Query: 296 --------QSSAMISDSSTNLIPDKASTQTLPTAAPSTSLPLVPPLNSGIDKTAVAPVSE 347
++S + +D N D + +QT+ T+ PS +P P D +A P +E
Sbjct: 253 IEKESTSIRNSTVTNDRVVNTTVDVSQSQTVETSGPSKEVPTTQP-----DASAAKPRTE 307
Score = 33.1 bits (74), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 24/98 (24%)
Query: 474 SATRFTEDFDFIAMNEKFN--KDEVWGHLGKSNKALDDGDNYEDEEDVGSSKHENKPVYV 531
SA + +FDF N+KF KD+ L G N E+ E+ KP
Sbjct: 300 SAAKPRTEFDFQTANQKFQSMKDD-----------LLKGKNDEEAEEF------YKP--- 339
Query: 532 KDDFFDSLSCDALNRGSHNGRPRFSEQVRR--DTETFG 567
K FFD++SC++ +G R R + ETFG
Sbjct: 340 KQSFFDNISCESKEKGMEAADRRALRDRERSLNMETFG 377
>sp|Q5R4R4|LS14A_PONAB Protein LSM14 homolog A OS=Pongo abelii GN=LSM14A PE=2 SV=1
Length = 463
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 48/72 (66%)
Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYIL 79
YIGS ISL SK+EIRYEG+L+ I+TE S++ L R + +PP D+++EYI+
Sbjct: 7 YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYII 66
Query: 80 FRGSDIKHCLLT 91
FRGSDIK +
Sbjct: 67 FRGSDIKDLTVC 78
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 24/111 (21%)
Query: 477 RFTEDFDFIAMNEKFNKDEV-----------WGHLGKSNKAL---DDGDNYEDEEDVGSS 522
+F +DFDF + N +FNK+E+ L K K + D GD+ D ++ +
Sbjct: 291 KFEKDFDFESANAQFNKEEIDREFHNKLKLKEDKLEKQEKPVNGEDKGDSGVDTQNSEGN 350
Query: 523 KHENKPV-----YVK-DDFFDSLSCDALNRGSHNGRPRFSEQVRRDTETFG 567
E P+ Y K FFD++SCD + RP ++E+ R + ETFG
Sbjct: 351 ADEEDPLGPNCYYDKTKSFFDNISCD----DNRERRPTWAEERRLNAETFG 397
>sp|Q8ND56|LS14A_HUMAN Protein LSM14 homolog A OS=Homo sapiens GN=LSM14A PE=1 SV=3
Length = 463
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 48/72 (66%)
Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYIL 79
YIGS ISL SK+EIRYEG+L+ I+TE S++ L R + +PP D+++EYI+
Sbjct: 7 YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYII 66
Query: 80 FRGSDIKHCLLT 91
FRGSDIK +
Sbjct: 67 FRGSDIKDLTVC 78
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 24/111 (21%)
Query: 477 RFTEDFDFIAMNEKFNKDEV-----------WGHLGKSNKAL---DDGDNYEDEEDVGSS 522
+F +DFDF + N +FNK+E+ L K K + D GD+ D ++ +
Sbjct: 291 KFEKDFDFESANAQFNKEEIDREFHNKLKLKEDKLEKQEKPVNGEDKGDSGVDTQNSEGN 350
Query: 523 KHENKPV-----YVK-DDFFDSLSCDALNRGSHNGRPRFSEQVRRDTETFG 567
E P+ Y K FFD++SCD + RP ++E+ R + ETFG
Sbjct: 351 ADEEDPLGPNCYYDKTKSFFDNISCD----DNRERRPTWAEERRLNAETFG 397
>sp|Q8K2F8|LS14A_MOUSE Protein LSM14 homolog A OS=Mus musculus GN=Lsm14a PE=1 SV=1
Length = 462
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 48/72 (66%)
Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYIL 79
YIGS ISL SK+EIRYEG+L+ I+TE S++ L R + +PP D+++EYI+
Sbjct: 7 YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYII 66
Query: 80 FRGSDIKHCLLT 91
FRGSDIK +
Sbjct: 67 FRGSDIKDLTVC 78
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 24/111 (21%)
Query: 477 RFTEDFDFIAMNEKFNKDEV-----------WGHLGKSNKAL---DDGDNYEDEEDVGSS 522
+F +DFDF + N +FNK+E+ L K K + D GD+ D ++ +
Sbjct: 290 KFEKDFDFESANAQFNKEEIDREFHNKLKLKEDKLEKQEKPVNGEDKGDSGVDTQNSEGN 349
Query: 523 KHENKPV-----YVK-DDFFDSLSCDALNRGSHNGRPRFSEQVRRDTETFG 567
E P+ Y K FFD++SCD + RP ++E+ R + ETFG
Sbjct: 350 ADEEDPLGPNCYYDKTKSFFDNISCD----DNRERRPTWAEERRLNAETFG 396
>sp|A0A8M2|L14AA_XENLA Protein LSM14 homolog A-A OS=Xenopus laevis GN=lsm14a-a PE=1 SV=1
Length = 471
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 48/72 (66%)
Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYIL 79
YIGS ISL SK+EIRYEG+L+ I+TE S++ L R + +PP D+I+EYI+
Sbjct: 7 YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEIFEYII 66
Query: 80 FRGSDIKHCLLT 91
FRGSDIK +
Sbjct: 67 FRGSDIKDLTVC 78
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 22/109 (20%)
Query: 477 RFTEDFDFIAMNEKFNKDEVWGHLGKSNKALDDG----DNYEDEED--------VGSSKH 524
+F +DFDF + N +FNK+E+ K DD N ED+ D G+++
Sbjct: 295 KFEKDFDFESANAQFNKEEIDREFHNKLKIKDDKPEKPVNGEDKTDSVVDTQNSEGNAEE 354
Query: 525 ENK-----PVYVK-DDFFDSLSCDALNRGSHNGRPRFSEQVRRDTETFG 567
E Y K FFD++SCD + + R ++E+ R + ETFG
Sbjct: 355 EEVLAGGVCYYDKTKSFFDNISCD----DNRDRRQTWAEERRINVETFG 399
>sp|Q3MHF8|LS14A_BOVIN Protein LSM14 homolog A OS=Bos taurus GN=LSM14A PE=2 SV=1
Length = 463
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 48/72 (66%)
Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYIL 79
YIGS ISL SK+EIRYEG+L+ I+TE S++ L R + +PP D+++EYI+
Sbjct: 7 YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYII 66
Query: 80 FRGSDIKHCLLT 91
FRGSDIK +
Sbjct: 67 FRGSDIKDLTVC 78
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 24/111 (21%)
Query: 477 RFTEDFDFIAMNEKFNKDEV-----------WGHLGKSNKAL---DDGDNYEDEEDVGSS 522
+F +DFDF + N +FNK+E+ L K K + D GD+ D ++ +
Sbjct: 291 KFEKDFDFESANAQFNKEEIDREFHNKLKLKEDKLEKQEKPVNGEDKGDSGVDTQNSEGN 350
Query: 523 KHENKPV-----YVK-DDFFDSLSCDALNRGSHNGRPRFSEQVRRDTETFG 567
E P+ Y K FFD++SCD + RP ++E+ R + ETFG
Sbjct: 351 ADEEDPLGPNCYYDKTKSFFDNISCD----DNRERRPTWAEERRLNAETFG 397
>sp|Q8AVJ2|L14AB_XENLA Protein LSM14 homolog A-B OS=Xenopus laevis GN=lsm14a-b PE=2 SV=1
Length = 471
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYIL 79
YIGS ISL SK+EIRYEG+L+ I+TE S++ L R + +PP D+++EYI+
Sbjct: 7 YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYII 66
Query: 80 FRGSDIKHCLLTIT 93
FRGSDIK LT+
Sbjct: 67 FRGSDIKD--LTVC 78
Score = 46.2 bits (108), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 22/109 (20%)
Query: 477 RFTEDFDFIAMNEKFNKDEVWGHLGKSNKALDDGD----NYEDEEDVGSSKHENKPVYVK 532
+F +DFDF + N +FNK+++ K DD N ED+ D G ++ +
Sbjct: 294 KFEKDFDFESANAQFNKEDIDREFHNKLKLKDDKPEKPLNGEDKTDSGVDTQNSEGHAEE 353
Query: 533 DD--------------FFDSLSCDALNRGSHNGRPRFSEQVRRDTETFG 567
+D FFDS+SCD + + R ++E+ R + ETFG
Sbjct: 354 EDVLAAGVCYYDKTKSFFDSISCD----DNRDRRQTWAEERRMNAETFG 398
>sp|Q6NVR8|LS14A_XENTR Protein LSM14 homolog A OS=Xenopus tropicalis GN=lsm14a PE=2 SV=1
Length = 469
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYIL 79
YIGS ISL SK+EIRYEG+L+ I+TE S++ L R + +PP D+++EYI+
Sbjct: 7 YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEVFEYII 66
Query: 80 FRGSDIKHCLLTIT 93
FRGSDIK LT+
Sbjct: 67 FRGSDIKD--LTVC 78
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 22/109 (20%)
Query: 477 RFTEDFDFIAMNEKFNKDEVWGHLGKSNKALDDG----DNYEDEEDVGSSKHENKPVYVK 532
+F +DFDF + N +FNK+E+ K DD N ED+ D G ++ +
Sbjct: 294 KFEKDFDFESANAQFNKEEIDREFHNKLKLKDDKPEKPVNGEDKTDSGVDTQNSEGNAEE 353
Query: 533 DD--------------FFDSLSCDALNRGSHNGRPRFSEQVRRDTETFG 567
DD FFD++SCD + + R +SE+ R + ETFG
Sbjct: 354 DDVLAGGVCYYDKTKSFFDNISCD----DNRDRRQTWSEERRINAETFG 398
>sp|Q9YH12|LSM14_PLEWA Protein LSM14 homolog OS=Pleurodeles waltl GN=lsm14 PE=1 SV=1
Length = 467
Score = 73.9 bits (180), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYIL 79
YIGS ISL SK+EIRYEG+L+ I+TE S++ L L + +PP D+++EYI+
Sbjct: 7 YIGSKISLISKAEIRYEGILYTIDTENSTVVLAKFALLGTEDRPTDRPIPPRDEVFEYII 66
Query: 80 FRGSDIKHCLLTIT 93
FRGSDIK LT+
Sbjct: 67 FRGSDIKD--LTVC 78
Score = 42.0 bits (97), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 32/115 (27%)
Query: 477 RFTEDFDFIAMNEKFNKDEVWGHLGKSNKALDD--------------GD----------N 512
+F +DFDF + N +F K+E+ K DD GD N
Sbjct: 295 KFEKDFDFESANAQFTKEEIDREFHNKLKLKDDKPEKVEKPVNGEDKGDSGIDTQNSEGN 354
Query: 513 YEDEEDVGSSKHENKPVYVKDDFFDSLSCDALNRGSHNGRPRFSEQVRRDTETFG 567
++EE + S+ + +K FFD++SCD + R ++E+ R + ETFG
Sbjct: 355 ADEEEALASNCYYDK----TKSFFDNISCD----DNRERRQTWAEERRINAETFG 401
>sp|Q68FI1|L14BA_XENLA Protein LSM14 homolog B-A OS=Xenopus laevis GN=lsm14b-a PE=1 SV=1
Length = 422
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 47/72 (65%)
Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYIL 79
YIGS ISL SK++IRYEG+L+ I+TE S++ L R + PP +++YEYI+
Sbjct: 7 YIGSKISLISKAQIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPAPPREEVYEYII 66
Query: 80 FRGSDIKHCLLT 91
FRGSDIK +
Sbjct: 67 FRGSDIKDITVC 78
>sp|Q498K9|L14BB_XENLA Protein LSM14 homolog B-B OS=Xenopus laevis GN=lsm14b-b PE=1 SV=1
Length = 380
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 47/72 (65%)
Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYIL 79
YIGS ISL SK++IRYEG+L+ I+TE S++ L R + PP +++YEYI+
Sbjct: 7 YIGSKISLISKAQIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPAPPREEVYEYII 66
Query: 80 FRGSDIKHCLLT 91
FRGSDIK +
Sbjct: 67 FRGSDIKDITVC 78
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 33/126 (26%)
Query: 463 RGRGRGNELSRSATRFTEDFDFIAMNEKFNKDEVWGHLGKSNKALDDGDNYEDE--EDVG 520
RG+ R + +A +F DFDF + N +FN++E+ +K D N++D+ E G
Sbjct: 229 RGQNRPTTVKENAIKFEGDFDFESANAQFNREEL-------DKEFKDKLNFKDDKPEKAG 281
Query: 521 SSKHENKPVYVKDD-------------------FFDSLSCDALNRGSHNGRPRFSEQVRR 561
K ++ D FFD++S + +R R ++E+ +
Sbjct: 282 EEKTDSGVETQNSDGNPEEDPLGPNTYYDRSKSFFDNISSEMKSR-----RTTWAEERKL 336
Query: 562 DTETFG 567
+TETFG
Sbjct: 337 NTETFG 342
>sp|Q566L7|LS14B_XENTR Protein LSM14 homolog B OS=Xenopus tropicalis GN=lsm14b PE=2 SV=1
Length = 382
Score = 73.2 bits (178), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 47/72 (65%)
Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYIL 79
YIGS ISL SK++IRYEG+L+ I+TE S++ L R + PP +++YEYI+
Sbjct: 7 YIGSKISLISKAQIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPAPPREEVYEYII 66
Query: 80 FRGSDIKHCLLT 91
FRGSDIK +
Sbjct: 67 FRGSDIKDITVC 78
Score = 39.3 bits (90), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 27/123 (21%)
Query: 463 RGRGRGNELSRSATRFTEDFDFIAMNEKFNKDEVWGHLG------------------KSN 504
RG+ R + +A +F DFDF N +FN++E+ S
Sbjct: 231 RGQNRPTTVKENAIKFEGDFDFETANAQFNREELDKEFKDKLNFKDEKPEKEGEEKTDSG 290
Query: 505 KALDDGDNYEDEEDVGSSKHENKPVYVKDDFFDSLSCDALNRGSHNGRPRFSEQVRRDTE 564
+ D +E+ +G + + ++ FFD++S + +R R ++E+ + +TE
Sbjct: 291 VETQNSDGNPEEDPLGPNIYYDR----SKSFFDNISSEMKSR-----RTTWAEERKLNTE 341
Query: 565 TFG 567
TFG
Sbjct: 342 TFG 344
>sp|Q8CGC4|LS14B_MOUSE Protein LSM14 homolog B OS=Mus musculus GN=Lsm14b PE=2 SV=3
Length = 385
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 47/72 (65%)
Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYIL 79
Y+GS ISL SK++IRYEG+L+ I+T+ S++ L R + PP ++IYEYI+
Sbjct: 9 YLGSKISLISKAQIRYEGILYTIDTDNSTVALAKVRSFGTEDRPTDRPAPPREEIYEYII 68
Query: 80 FRGSDIKHCLLT 91
FRGSDIK +
Sbjct: 69 FRGSDIKDITVC 80
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 77/183 (42%), Gaps = 27/183 (14%)
Query: 409 KDVEVVQLSSSESAAAPPPASDVQEPILPLPSTTE-------RKPYGAPTSTQYGYRGGR 461
K QL+ ++ + PASDV + P P T+ R+P + R
Sbjct: 178 KVTSATQLNGRQAQPSSKPASDV---VQPAPVHTQGQVNDENRRP--PRRRSGNRRTRNR 232
Query: 462 GRGRGRGNELSRSATRFTEDFDFIAMNEKFNKDEVWGHLGKSNKALDDGDNYEDEEDVGS 521
RG+ R + + +F DFDF + N +FN++E+ K DD + +E+D
Sbjct: 233 SRGQNRPTNVKENTIKFEGDFDFESANAQFNREELDKEFKKKLNFKDDKADKGEEKDPAV 292
Query: 522 SKHENKPVYVKD------------DFFDSLSCDALNRGSHNGRPRFSEQVRRDTETFGDF 569
+ +D FFD++S + + + R ++E+ + +TETFG
Sbjct: 293 MAQSEETAAEEDLLGPNCYYDKSKSFFDNISSEL---KTSSRRTTWAEERKLNTETFGVS 349
Query: 570 PRY 572
R+
Sbjct: 350 GRF 352
>sp|Q9BX40|LS14B_HUMAN Protein LSM14 homolog B OS=Homo sapiens GN=LSM14B PE=1 SV=1
Length = 385
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 47/72 (65%)
Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYIL 79
Y+GS ISL SK++IRYEG+L+ I+T+ S++ L R + PP ++IYEYI+
Sbjct: 9 YLGSKISLISKAQIRYEGILYTIDTDNSTVALAKVRSFGTEDRPTDRPAPPREEIYEYII 68
Query: 80 FRGSDIKHCLLT 91
FRGSDIK +
Sbjct: 69 FRGSDIKDITVC 80
Score = 37.0 bits (84), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 82/211 (38%), Gaps = 36/211 (17%)
Query: 393 PGLPAVSSSQSSQAAQ---------------KDVEVVQLSSSESAAAPPPASDVQEPILP 437
P +P S QA Q K QL+ ++ + ASDV +P
Sbjct: 147 PSIPVGKSPMVEQAVQTGSADNLNAKKLLPGKGTTGTQLNGRQAQPSSKTASDVVQPAAV 206
Query: 438 LP----STTERKPYGAPTSTQYGYRGGRGRGRGRGNELSRSATRFTEDFDFIAMNEKFNK 493
+ R+P + + R RG+ R + + +F DFDF + N +FN+
Sbjct: 207 QAQGQVNDENRRPQRRRSGNR--RTRNRSRGQNRPTNVKENTIKFEGDFDFESANAQFNR 264
Query: 494 DEVWGHLGKSNKALDDGDNYEDEEDVGSSKHENKPVYVKD------------DFFDSLSC 541
+E+ K DD +E+D+ + +D FFD++S
Sbjct: 265 EELDKEFKKKLNFKDDKAEKGEEKDLAVVTQSAEAPAEEDLLGPNCYYDKSKSFFDNISS 324
Query: 542 DALNRGSHNGRPRFSEQVRRDTETFGDFPRY 572
+ L S R ++E+ + +TETFG R+
Sbjct: 325 E-LKTSSR--RTTWAEERKLNTETFGVSGRF 352
>sp|P45978|SCD6_YEAST Protein SCD6 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SCD6 PE=1 SV=1
Length = 349
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGP-QVPPSDKIYEY 77
YIG ISL S ++ RY G+L +I++E+ ++ L+ R +G + GP ++ P+ +Y
Sbjct: 4 YIGKTISLISVTDNRYVGLLEDIDSEKGTVTLKEVRCFGTEGRKNWGPEEIYPNPTVYNS 63
Query: 78 ILFRGSDIKHCLL 90
+ F GS++K +
Sbjct: 64 VKFNGSEVKDLSI 76
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.130 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 251,331,915
Number of Sequences: 539616
Number of extensions: 12316961
Number of successful extensions: 43544
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 1253
Number of HSP's that attempted gapping in prelim test: 37743
Number of HSP's gapped (non-prelim): 5893
length of query: 613
length of database: 191,569,459
effective HSP length: 123
effective length of query: 490
effective length of database: 125,196,691
effective search space: 61346378590
effective search space used: 61346378590
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)