Query 007191
Match_columns 613
No_of_seqs 237 out of 308
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 19:28:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007191.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007191hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fb7_A SM-like protein, LSM-14 100.0 7.5E-36 2.6E-40 259.7 8.2 72 14-86 11-83 (95)
2 2vxe_A CG10686-PA; EDC3, CAR-1 100.0 1.5E-34 5.2E-39 248.7 10.0 70 16-86 7-77 (88)
3 2vc8_A Enhancer of mRNA-decapp 99.2 1.9E-11 6.6E-16 104.7 5.7 59 16-86 3-62 (84)
4 3pgw_B SM B; protein-RNA compl 96.9 0.026 8.9E-07 56.4 15.8 70 16-86 8-78 (231)
5 2rm4_A CG6311-PB, DM EDC3; enh 96.2 0.013 4.3E-07 51.8 7.5 57 17-86 7-65 (103)
6 4a53_A EDC3; RNA binding prote 95.2 0.019 6.6E-07 52.6 4.9 52 16-86 6-57 (125)
7 1d3b_B Protein (small nuclear 95.1 0.036 1.2E-06 46.9 6.0 70 16-86 8-78 (91)
8 1y96_A Gemin6, SIP2, GEM-assoc 95.1 0.038 1.3E-06 47.7 6.2 55 17-86 12-66 (86)
9 1i8f_A Putative snRNP SM-like 94.6 0.036 1.2E-06 46.2 4.6 57 18-86 17-74 (81)
10 1i4k_A Putative snRNP SM-like 94.5 0.047 1.6E-06 44.8 5.0 58 18-86 10-68 (77)
11 1d3b_A Protein (small nuclear 94.0 0.08 2.7E-06 43.7 5.6 58 18-86 11-69 (75)
12 3s6n_G Small nuclear ribonucle 94.0 0.075 2.6E-06 43.8 5.4 60 16-86 8-68 (76)
13 1th7_A SnRNP-2, small nuclear 93.9 0.08 2.7E-06 44.0 5.5 59 17-86 14-73 (81)
14 4a53_A EDC3; RNA binding prote 93.7 0.038 1.3E-06 50.7 3.4 27 475-501 96-122 (125)
15 1h64_1 SnRNP SM-like protein; 93.7 0.076 2.6E-06 43.4 4.8 58 18-86 10-68 (75)
16 4emk_C U6 snRNA-associated SM- 93.5 0.12 3.9E-06 46.2 6.0 68 15-86 26-94 (113)
17 4emk_A U6 snRNA-associated SM- 93.3 0.13 4.6E-06 44.6 6.0 59 18-86 26-85 (94)
18 2y9a_D Small nuclear ribonucle 93.1 0.19 6.5E-06 45.8 7.0 58 18-86 11-69 (126)
19 1mgq_A SM-like protein; LSM, R 92.9 0.075 2.6E-06 44.5 3.8 60 16-86 19-79 (83)
20 1b34_A Protein (small nuclear 92.7 0.18 6.2E-06 45.1 6.2 58 18-86 8-66 (119)
21 2fwk_A U6 snRNA-associated SM- 92.5 0.12 4.1E-06 46.4 4.6 68 18-86 34-107 (121)
22 4emk_B U6 snRNA-associated SM- 92.1 0.2 6.7E-06 41.1 5.2 58 18-86 10-68 (75)
23 4emh_A Probable U6 snRNA-assoc 92.0 0.19 6.5E-06 44.4 5.3 60 17-86 21-81 (105)
24 1m5q_A SMAP3, small nuclear ri 91.9 0.22 7.5E-06 45.6 5.7 54 18-86 6-60 (130)
25 1ljo_A Archaeal SM-like protei 91.6 0.21 7.3E-06 41.0 4.9 58 18-86 11-70 (77)
26 3bw1_A SMX4 protein, U6 snRNA- 90.9 0.3 1E-05 42.1 5.2 66 17-86 15-81 (96)
27 2wax_B Enhancer of mRNA-decapp 90.6 0.059 2E-06 41.5 0.5 24 479-502 17-40 (44)
28 1n9r_A SMF, small nuclear ribo 90.4 0.23 7.7E-06 42.9 4.0 60 16-86 25-86 (93)
29 3s6n_F Small nuclear ribonucle 89.2 0.37 1.3E-05 40.8 4.4 58 18-86 12-70 (86)
30 1h2v_Z 20 kDa nuclear CAP bind 86.8 0.11 3.8E-06 46.2 -0.4 26 534-561 96-121 (156)
31 4emg_A Probable U6 snRNA-assoc 86.6 0.87 3E-05 39.1 5.2 67 18-86 15-86 (93)
32 3d3j_A Enhancer of mRNA-decapp 86.5 0.13 4.5E-06 52.6 0.0 23 481-503 1-23 (306)
33 3q2s_C Cleavage and polyadenyl 81.1 0.32 1.1E-05 46.9 0.1 23 534-558 127-149 (229)
34 1b34_B Protein (small nuclear 79.3 3.4 0.00012 36.7 6.1 67 19-86 34-107 (118)
35 3s6n_E Small nuclear ribonucle 78.8 2 6.7E-05 37.0 4.3 59 18-86 22-85 (92)
36 1ycy_A Conserved hypothetical 60.6 4.7 0.00016 33.5 2.4 42 18-61 12-55 (71)
37 3pgw_S U1-70K; protein-RNA com 52.4 9.1 0.00031 40.5 3.7 25 534-560 159-183 (437)
38 3u5c_h Suppressor protein STM1 29.0 12 0.0004 38.4 0.0 11 561-571 207-218 (273)
39 1nz9_A Transcription antitermi 24.5 48 0.0016 25.4 2.8 38 21-59 7-45 (58)
40 3u5c_h Suppressor protein STM1 23.8 17 0.00057 37.2 0.0 10 481-490 116-125 (273)
41 2e70_A Transcription elongatio 22.2 72 0.0025 26.6 3.5 38 16-53 15-52 (71)
No 1
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=100.00 E-value=7.5e-36 Score=259.74 Aligned_cols=72 Identities=47% Similarity=0.812 Sum_probs=65.5
Q ss_pred CCCCcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191 14 SGSADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (613)
Q Consensus 14 ~~~~~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK 86 (613)
++.+.+|||++||||||+|||||||||+||++++||+|+||| ||||||++++ +|||+++|||||||||+|||
T Consensus 11 ~~~~~~~IGs~ISLISk~dIRYeGiL~~In~~~sTiaL~nVRsfGTEgR~~~~-~ipp~~~vyeyIvFrGsDIK 83 (95)
T 2fb7_A 11 PSGGTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDR-PIAPRDETFEYIIFRGSDIK 83 (95)
T ss_dssp -----CCSSEEEEEEETTTEEEEEEEEEEETTTTEEEEESCCCCSCCSSSCSS-CCCSCCCCSSCEEECSTTEE
T ss_pred CCccCcccCCeEEEEECCCceEEEEEecccCccCEEEEEeeeEecccCCCCCC-ccCCCCcceeEEEEcCCCcc
Confidence 357899999999999999999999999999999999999999 9999999874 59999999999999999999
No 2
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=100.00 E-value=1.5e-34 Score=248.73 Aligned_cols=70 Identities=44% Similarity=0.758 Sum_probs=67.5
Q ss_pred CCcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191 16 SADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (613)
Q Consensus 16 ~~~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK 86 (613)
..++|||++||||||+|||||||||+||++++||+|+||| ||||||+++ ++|||+++|||||+|||+|||
T Consensus 7 ~~~~yIGs~iSLISk~dIRYeGiL~~In~~~sTi~L~nVrsfGTEgR~~~-~~ipp~~~vy~yIvFrgsDIK 77 (88)
T 2vxe_A 7 GGLPELGSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQ-FQIAPQSQIYDYILFRGSDIK 77 (88)
T ss_dssp SSSCCTTCEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEECCCTTTCCS-SCCCCCCSCEEEEEEETTTEE
T ss_pred CCCcccCCeEEEEECCCceEEEEEeeecCcccEEEEEeeeEecCcCCCCC-cccCCCCceeeEEEEccCCcc
Confidence 4599999999999999999999999999999999999999 999999976 679999999999999999999
No 3
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=99.18 E-value=1.9e-11 Score=104.66 Aligned_cols=59 Identities=22% Similarity=0.425 Sum_probs=49.6
Q ss_pred CCcccccceeEEEecCCc-eeEEEeeeecCCCCeeeecccccccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191 16 SADSYIGSLISLTSKSEI-RYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (613)
Q Consensus 16 ~~~~~IGs~ISLISks~I-RYeGiL~~Id~e~sTv~L~nVrfGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK 86 (613)
..+.||||.|||.++.+| +|+|+|++||+.++||+|+|| | | ++. .+++.+ |+|++.||+
T Consensus 3 Ma~~~iGs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~-f----~--NG~-~~~s~e----Vtls~~DI~ 62 (84)
T 2vc8_A 3 MATDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRP-F----H--NGV-KCLVPE----VTFRAGDIT 62 (84)
T ss_dssp --CTTTTCEEEEECCTTTCEEEEEEEEEETTTTEEEEEEE-E----E--TTE-ECSSSE----EEEEGGGCS
T ss_pred ccccccCCEEEEEECCCceEEEEEEEEeccCCCeEEEehh-h----h--CCC-CCCCcE----EEEEecChh
Confidence 458999999999999999 999999999999999999999 4 1 332 344444 999999999
No 4
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=96.88 E-value=0.026 Score=56.38 Aligned_cols=70 Identities=9% Similarity=0.114 Sum_probs=53.0
Q ss_pred CCcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191 16 SADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (613)
Q Consensus 16 ~~~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK 86 (613)
....||+++|.++-|.+-.|+|+|..+| +.--|.|+||. |=++..+......--.+..+..|+.||..|.
T Consensus 8 kL~klIdKrV~V~LkdGRel~GtLkgFD-q~MNLVL~Da~E~~~ik~k~~k~~~~~~~R~LGlV~IRGdnIV 78 (231)
T 3pgw_B 8 KMLQHIDYRMRCILQDGRIFIGTFKAFD-KHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLV 78 (231)
T ss_pred HHHHhcCCeEEEEECCCcEEEEEEEEEc-ccccEEecCEEEEEeccCcccccccccceeEeceEEECCCcEE
Confidence 4678999999999999999999999999 57789999999 7653221110111123456778999999999
No 5
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=96.19 E-value=0.013 Score=51.85 Aligned_cols=57 Identities=19% Similarity=0.415 Sum_probs=45.1
Q ss_pred CcccccceeEEEecCCc-eeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191 17 ADSYIGSLISLTSKSEI-RYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (613)
Q Consensus 17 ~~~~IGs~ISLISks~I-RYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK 86 (613)
.+.|||+.|||-...++ -|.|.+..||. .+|+|.+.- =| ||-..++=| ++|+..||+
T Consensus 7 ~edwiG~~VSI~C~d~LGVyQG~I~~V~~--~~ItL~kaFrNG----------iplk~~~~E-VtLsa~DI~ 65 (103)
T 2rm4_A 7 DQDWIGCAVSIACDEVLGVFQGLIKQISA--EEITIVRAFRNG----------VPLRKQNAE-VVLKCTDIR 65 (103)
T ss_dssp SGGGTTCEEEEEECTTTCEEEEEEEEEET--TEEEEEEEEETT----------EECSCSSSC-EEEETTTEE
T ss_pred ccceeceEEEEeeCCcceEeeEEEEEccc--ceeEEhhhhhcC----------cCcCCCCce-EEEEecchh
Confidence 46899999999999999 99999999994 559998754 44 332333333 899999999
No 6
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=95.19 E-value=0.019 Score=52.57 Aligned_cols=52 Identities=23% Similarity=0.296 Sum_probs=44.5
Q ss_pred CCcccccceeEEEecCCceeEEEeeeecCCCCeeeecccccccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191 16 SADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (613)
Q Consensus 16 ~~~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVrfGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK 86 (613)
+..+|||++|.|.-|.+-+|.|+|..||...-|+.|+||... .+.++++||+
T Consensus 6 ~~sqFlGy~V~v~LkDgs~~qG~I~~vd~k~LtL~~~~a~~s-------------------~~~I~asdI~ 57 (125)
T 4a53_A 6 SVADFYGSNVEVLLNNDSKARGVITNFDSSNSILQLRLANDS-------------------TKSIVTKDIK 57 (125)
T ss_dssp CHHHHTTCEEEEEETTSCEEEEEEEEEETTTTEEEEEETTTE-------------------EEEEEGGGEE
T ss_pred cHHHhcCceEEEEECCCCEeeEEEEeecCCeeEEeccccccc-------------------cceeeccccc
Confidence 568999999999999999999999999988877777998411 1188999999
No 7
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=95.06 E-value=0.036 Score=46.91 Aligned_cols=70 Identities=9% Similarity=0.114 Sum_probs=51.4
Q ss_pred CCcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191 16 SADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (613)
Q Consensus 16 ~~~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK 86 (613)
....|||++|.+.-+.+-.|+|+|..+| +.--|.|+|+. |-+.-........-.....+..|+.||+.|.
T Consensus 8 ~L~~~~~k~V~V~l~~gr~~~G~L~~~D-~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~lg~v~iRG~~I~ 78 (91)
T 1d3b_B 8 KMLQHIDYRMRCILQDGRIFIGTFKAFD-KHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLV 78 (91)
T ss_dssp CCGGGTTSEEEEEETTCCEEEEEEEECC-TTCCEEEEEEEEEEEECCSSTTSCCEEEEEEEEEEEECGGGEE
T ss_pred HHHHHcCCcEEEEECCCeEEEEEEEEEC-CCCeEEecCEEEEeeccccccccccCccEeECCEEEECCCeEE
Confidence 5689999999999999999999999999 67889999998 7543111100000011234567999999999
No 8
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=95.06 E-value=0.038 Score=47.73 Aligned_cols=55 Identities=18% Similarity=0.215 Sum_probs=46.6
Q ss_pred CcccccceeEEEecCCceeEEEeeeecCCCCeeeecccccccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191 17 ADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (613)
Q Consensus 17 ~~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVrfGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK 86 (613)
...|||++|.++...+=.|+|+||++|+..-.|.|.|. -.++-|--++-.|.-||
T Consensus 12 l~~li~KeV~V~l~dg~~y~G~l~tvDp~s~sIvL~n~---------------~~~~~~~~~iI~G~aI~ 66 (86)
T 1y96_A 12 WQDYIYKEVRVTASEKNEYKGWVLTTDPVSANIVLVNF---------------LEDGSMSVTGIMGHAVQ 66 (86)
T ss_dssp HHHTTTCEEEEEETTTEEEEEEEEEECTTTCCEEEEEE---------------CTTSCEEEEEECGGGEE
T ss_pred HHhhcCCEEEEEEcCCCEEEEEEEEECCCceEEEEeec---------------ccCCeEEEEEEecceEE
Confidence 35799999999999999999999999999999999984 12444566777888888
No 9
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=94.55 E-value=0.036 Score=46.20 Aligned_cols=57 Identities=12% Similarity=0.240 Sum_probs=48.3
Q ss_pred cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191 18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (613)
Q Consensus 18 ~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK 86 (613)
..++|++|.+.-|.+-.|+|+|..+| +.--|.|+||. + ++. ...-+..++.||+.|.
T Consensus 17 ~~~~~~~V~V~l~~g~~~~G~L~~~D-~~mNlvL~d~~e~--~~~---------~~~~lg~v~iRG~~I~ 74 (81)
T 1i8f_A 17 QDSIGKQVLVKLRDSHEIRGILRSFD-QHVNLLLEDAEEI--IDG---------NVYKRGTMVVRGENVL 74 (81)
T ss_dssp HTTTTSEEEEEEGGGEEEEEEEEEEC-TTCCEEEEEEEEE--ETT---------EEEEEEEEEECGGGEE
T ss_pred HHHCCCeEEEEEcCCcEEEEEEEEEc-CCCeeEEccEEEE--cCC---------cccCCCEEEECCCEEE
Confidence 57899999999999999999999999 67889999999 8 221 1234677999999998
No 10
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=94.45 E-value=0.047 Score=44.76 Aligned_cols=58 Identities=12% Similarity=0.191 Sum_probs=48.5
Q ss_pred cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191 18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (613)
Q Consensus 18 ~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK 86 (613)
..++|++|.+.-|.+-.|+|+|..+| +.--|.|+||. +-.++ ...-+..++.||+.|.
T Consensus 10 ~~~~~~~V~V~L~~g~~~~G~L~~~D-~~mNlvL~d~~e~~~~~----------~~~~lg~v~iRG~~I~ 68 (77)
T 1i4k_A 10 NRSLKSPVIVRLKGGREFRGTLDGYD-IHMNLVLLDAEEIQNGE----------VVRKVGSVVIRGDTVV 68 (77)
T ss_dssp HTTTTSEEEEEETTSCEEEEEEEEEC-TTCCEEEEEEEEEETTE----------EEEEEEEEEECGGGEE
T ss_pred HHhCCCEEEEEEcCCCEEEEEEEEEc-CCCCeEEeeEEEEecCC----------cEeECCEEEECCCEEE
Confidence 56899999999999999999999999 67889999998 65321 1234677999999998
No 11
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=94.04 E-value=0.08 Score=43.68 Aligned_cols=58 Identities=17% Similarity=0.303 Sum_probs=48.5
Q ss_pred cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191 18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (613)
Q Consensus 18 ~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK 86 (613)
..++|++|.+.-|.+..|+|+|..+| +.--|.|+||. +-.++ ...-++.|+.||+.|.
T Consensus 11 ~~~~g~~V~VeLk~g~~~~G~L~~~D-~~MNl~L~~~~e~~~~~----------~~~~lg~v~IRG~nI~ 69 (75)
T 1d3b_A 11 HEAEGHIVTCETNTGEVYRGKLIEAE-DNMNCQMSNITVTYRDG----------RVAQLEQVYIRGCKIR 69 (75)
T ss_dssp HHTTTSEEEEEETTSCEEEEEEEEEC-TTCCEEEEEEEEECTTS----------CEEEEEEEEECGGGEE
T ss_pred HHhCCCEEEEEECCCcEEEEEEEEEc-cceeEEEEeEEEECCCC----------cEEEcCeEEEeCCEEE
Confidence 46899999999999999999999999 66789999999 64222 1345778999999998
No 12
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=94.04 E-value=0.075 Score=43.81 Aligned_cols=60 Identities=13% Similarity=0.256 Sum_probs=44.0
Q ss_pred CCcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191 16 SADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (613)
Q Consensus 16 ~~~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK 86 (613)
....|||++|.+.-|.+-.|+|+|..+| +.--|.|+|+. +-.++ ....+..++.||+.|.
T Consensus 8 ~L~~~~~k~V~V~Lk~gr~~~G~L~~~D-~~mNlvL~~~~e~~~~~----------~~~~lg~v~iRG~~I~ 68 (76)
T 3s6n_G 8 ELKKFMDKKLSLKLNGGRHVQGILRGFD-PFMNLVIDECVEMATSG----------QQNNIGMVVIRGNSII 68 (76)
T ss_dssp ------CCEEEEEETTTEEEEEEEEEEC-TTCCEEEEEEEECCCC--------------CBSSEEECSSSEE
T ss_pred HHHHhCCCeEEEEECCCcEEEEEEEEEC-CcceEEEeceEEEccCC----------cEeEcCEEEECCCeEE
Confidence 5678999999999999999999999999 57789999998 64321 1234667999999998
No 13
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=93.94 E-value=0.08 Score=44.00 Aligned_cols=59 Identities=19% Similarity=0.349 Sum_probs=48.9
Q ss_pred CcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191 17 ADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (613)
Q Consensus 17 ~~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK 86 (613)
...++|++|.+.-|.+-.|+|+|..+| +.--|.|+||. +-.++ ...-+..++.||+.|.
T Consensus 14 L~~~~~~~V~V~l~~g~~~~G~L~~~D-~~mNlvL~d~~e~~~~~----------~~~~lg~v~iRG~~I~ 73 (81)
T 1th7_A 14 LAESLNNLVLVKLKGNKEVRGMLRSYD-QHMNLVLSDSEEIQSDG----------SGKKLGTIVIRGDNVI 73 (81)
T ss_dssp HHHHTTSEEEEEETTTEEEEEEEEEEC-TTCCEEEEEEEEECSSS----------CEEEEEEEEECGGGEE
T ss_pred HHHhCCCeEEEEEcCCcEEEEEEEEEc-CCCCEEEccEEEEecCC----------ceeECCEEEECCCEEE
Confidence 357899999999999999999999999 67889999998 65321 1234677999999998
No 14
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=93.74 E-value=0.038 Score=50.65 Aligned_cols=27 Identities=37% Similarity=0.631 Sum_probs=23.1
Q ss_pred cccccccccHHHHhhhhchhhhhhccc
Q 007191 475 ATRFTEDFDFIAMNEKFNKDEVWGHLG 501 (613)
Q Consensus 475 ~~kF~eDFDFea~NeKFnKDEv~g~Lg 501 (613)
.+..+|||||+...++|+|..|..+|-
T Consensus 96 ~~d~~~dFDFq~nL~~FnKk~vF~ql~ 122 (125)
T 4a53_A 96 SMDCDEEFDFAANLEKFDKKQVFAEFR 122 (125)
T ss_dssp CSSSSSCCCCTBTTBCSSTTCCSSCCC
T ss_pred ccccccccchhhhHHhhhHHHHHHHHh
Confidence 346899999999999999999987653
No 15
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=93.70 E-value=0.076 Score=43.37 Aligned_cols=58 Identities=16% Similarity=0.274 Sum_probs=48.3
Q ss_pred cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191 18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (613)
Q Consensus 18 ~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK 86 (613)
..++|++|.+.-|.+-.|+|+|..+| +.--|.|+|+. +-.++ ...-+..++.||+.|.
T Consensus 10 ~~~~~~~V~V~l~~g~~~~G~L~~~D-~~mNlvL~d~~e~~~~~----------~~~~lg~v~iRG~~I~ 68 (75)
T 1h64_1 10 HRSLDKDVLVILKKGFEFRGRLIGYD-IHLNVVLADAEMIQDGE----------VVKRYGKIVIRGDNVL 68 (75)
T ss_dssp HTTTTSEEEEEETTSEEEEEEEEEEC-TTCCEEEEEEEEEETTE----------EEEEEEEEEECGGGEE
T ss_pred HHHCCCEEEEEECCCCEEEEEEEEEe-CCCCeEEeeEEEEeeCC----------ceeECCEEEECCCEEE
Confidence 57899999999999999999999999 67889999998 65321 2234667999999998
No 16
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=93.46 E-value=0.12 Score=46.25 Aligned_cols=68 Identities=13% Similarity=0.156 Sum_probs=46.5
Q ss_pred CCCcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191 15 GSADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (613)
Q Consensus 15 ~~~~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK 86 (613)
..-..|||++|.++-+.+-.|+|+|..+| +.--|.|.||. |-++.- +...--....+..|+.||..|.
T Consensus 26 ~~L~~~l~k~V~V~L~dGr~~~G~L~~fD-~~mNLVL~d~~E~~~~~~---~~~~~~~~r~lG~v~IRG~nIv 94 (113)
T 4emk_C 26 LDLSRYQDQRIQATFTGGRQITGILKGFD-QLMNLVLDDVEEQLRNPE---DGKLTGAIRKLGLVVVRGTTLV 94 (113)
T ss_dssp ------CCSEEEEEETTSCEEEEEEEEEC-TTCCEEEEEEEEEC------------CCEEEEEEEEECTTTEE
T ss_pred HHHHHHcCCcEEEEEeCCeEEEEEEEEEc-CcccEEEeeEEEEEcCCC---CcccccceeEccEEEECCCeEE
Confidence 34568999999999999999999999999 47789999998 654311 1111123445778999999998
No 17
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=93.35 E-value=0.13 Score=44.57 Aligned_cols=59 Identities=22% Similarity=0.307 Sum_probs=49.4
Q ss_pred cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191 18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (613)
Q Consensus 18 ~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK 86 (613)
..|+|++|.+.-|.+-.|+|+|..+| +---|.|+||. +-+++ . ....+..|+.||+.|.
T Consensus 26 ~~~l~k~V~V~Lk~gr~~~G~L~gfD-~~mNlvL~d~~E~~~~~-----~----~~~~lg~v~IRG~nI~ 85 (94)
T 4emk_A 26 DKCIGSNLWVIMKSEREFAGTLVGFD-DYVNIVLKDVTEYDTVT-----G----VTEKHSEMLLNGNGMC 85 (94)
T ss_dssp HHTTTSEEEEEESSSEEEEEEEEEEC-TTCCEEEEEEEEEETTT-----C----CEEEEEEEEECSTTEE
T ss_pred HHHcCCeEEEEECCCcEEEEEEEEEc-ccCCeEeeeEEEEecCC-----C----cEeEcCEEEEcCCEEE
Confidence 46899999999999999999999999 47789999998 76421 1 2456788999999998
No 18
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=93.15 E-value=0.19 Score=45.79 Aligned_cols=58 Identities=19% Similarity=0.311 Sum_probs=49.0
Q ss_pred cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191 18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (613)
Q Consensus 18 ~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK 86 (613)
..++|++|.+.-|.+.-|.|+|..+| ..--|.|+||. +-.++ . ..-++.|+.||+.|.
T Consensus 11 ~~~~gk~V~VeLknG~~~~G~L~~~D-~~MNi~L~dv~e~~~~g-----~-----~~~l~~v~IRGnnI~ 69 (126)
T 2y9a_D 11 HEAEGHIVTCETNTGEVYRGKLIEAE-DNMNCQMSNITVTYRDG-----R-----VAQLEQVYIRGSKIR 69 (126)
T ss_dssp HSCSSCEEEEEESSCCEEEEEEEEEC-TTSCEEEEEEEEECTTS-----C-----CEEEEEEEECGGGEE
T ss_pred HHhCCCEEEEEECCCcEEEEEEEEEc-CceEEEEeeEEEEcCCC-----c-----EeecccEEEeCCEEE
Confidence 46899999999999999999999999 57789999999 64322 1 346788999999999
No 19
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=92.94 E-value=0.075 Score=44.49 Aligned_cols=60 Identities=20% Similarity=0.333 Sum_probs=49.3
Q ss_pred CCcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191 16 SADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (613)
Q Consensus 16 ~~~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK 86 (613)
.-..++|++|.+.-|.+-.|+|+|..+| +.--|.|+||. +-.++ ...-+..++.||+.|.
T Consensus 19 ~L~~~~~~~V~V~Lk~g~~~~G~L~~~D-~~mNlvL~d~~e~~~~~----------~~~~lg~v~IRG~~I~ 79 (83)
T 1mgq_A 19 ALGNSLNSPVIIKLKGDREFRGVLKSFD-LHMNLVLNDAEELEDGE----------VTRRLGTVLIRGDNIV 79 (83)
T ss_dssp HHHHTTTSEEEEEETTTEEEEEEEEEEC-TTCCEEEEEEEEEETTE----------EEEEEEEEEECGGGEE
T ss_pred HHHHhCCCEEEEEEcCCcEEEEEEEEEC-CCceeEEccEEEEecCC----------cccCCCEEEECCCEEE
Confidence 4467899999999999999999999999 67889999998 65321 2234677999999987
No 20
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=92.72 E-value=0.18 Score=45.13 Aligned_cols=58 Identities=12% Similarity=0.177 Sum_probs=48.3
Q ss_pred cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191 18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (613)
Q Consensus 18 ~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK 86 (613)
..++|++|.+.-|.+..|+|+|..+| +.--|.|+||. +-. +. ...-++.|+.||+.|.
T Consensus 8 ~~~~gk~V~V~Lk~g~~~~G~L~~~D-~~MNlvL~d~~e~~~-----~~-----~~~~lg~v~IRG~nI~ 66 (119)
T 1b34_A 8 MKLSHETVTIELKNGTQVHGTITGVD-VSMNTHLKAVKMTLK-----NR-----EPVQLETLSIRGNNIR 66 (119)
T ss_dssp HTCTTCEEEEEETTCCEEEEEEEEEC-TTCCEEEEEEEEECT-----TS-----CCEEEEEEEECGGGEE
T ss_pred HHhCCCEEEEEEcCCCEEEEEEEEEc-ccceEEeccEEEecC-----CC-----ceeEcceEEEcCCeEE
Confidence 46899999999999999999999999 67789999999 731 11 1246788999999999
No 21
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=92.47 E-value=0.12 Score=46.37 Aligned_cols=68 Identities=24% Similarity=0.314 Sum_probs=49.0
Q ss_pred cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCC----CCC-CCCCCCceeeEEEEcCccc
Q 007191 18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKI----GPQ-VPPSDKIYEYILFRGSDIK 86 (613)
Q Consensus 18 ~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~----~~~-Ipps~~vyeyIvFrgsDIK 86 (613)
..|||++|.+.-|.+-.|+|+|..+| +.--|.|+||. +-++..+.+ +.+ .-.....+..|+.||+.|.
T Consensus 34 ~~~l~k~V~V~Lk~Gr~~~G~L~~fD-~~mNlVL~d~~E~~~~~~~~~~~~~g~~~~~~~~r~lG~v~IRG~nVv 107 (121)
T 2fwk_A 34 DKCIGNRIYVVMKGDKEFSGVLRGFD-EYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSGNNVA 107 (121)
T ss_dssp HHTBTSBCEEEETTTEEECCEEEEEC-TTCCEEEESCCEEEC---------------CEECCCCSEEEECGGGEE
T ss_pred HHHcCCeEEEEECCCcEEEEEEEEEc-ccCCeEeceEEEEEeccccccccccCcccccccceEcceEEECCCEEE
Confidence 47899999999999999999999999 67889999999 765422211 100 0001344678999999998
No 22
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=92.10 E-value=0.2 Score=41.11 Aligned_cols=58 Identities=19% Similarity=0.423 Sum_probs=47.6
Q ss_pred cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191 18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (613)
Q Consensus 18 ~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK 86 (613)
..++|++|.+.-|.+-.|+|+|..+|. .--|.|+|+. +-. + . ....+..++.||+.|.
T Consensus 10 ~~~~~k~V~V~Lk~g~~~~G~L~~~D~-~mNlvL~d~~e~~~-~-----~----~~~~lg~v~iRG~~I~ 68 (75)
T 4emk_B 10 NKVIGKKVLIRLSSGVDYKGILSCLDG-YMNLALERTEEYVN-G-----K----KTNVYGDAFIRGNNVL 68 (75)
T ss_dssp HHTTTSEEEEECTTSCEEEEEEEEECT-TCEEEEEEEEEEET-T-----E----EEEEEEEEEEEGGGSS
T ss_pred HHhCCCeEEEEEcCCcEEEEEEEEEcC-cceEEEccEEEEec-C-----C----cccEecEEEEcCCeEE
Confidence 468999999999999999999999994 7789999988 631 1 1 1235678999999998
No 23
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=92.02 E-value=0.19 Score=44.41 Aligned_cols=60 Identities=22% Similarity=0.211 Sum_probs=45.6
Q ss_pred CcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191 17 ADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (613)
Q Consensus 17 ~~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK 86 (613)
-..++|++|.+.-|.+..|+|+|..+|. .--|.|+||. +-.+|. ...-++.|+.||+.|.
T Consensus 21 L~~~igk~V~V~Lk~G~~~~G~L~~~D~-~MNlvL~d~~e~~~dg~---------~~~~lg~v~IRG~nI~ 81 (105)
T 4emh_A 21 LNATQGRPILVELKNGETFNGHLENCDN-YMNLTLREVIRTMPDGD---------KFFRLPECYIRGNNIK 81 (105)
T ss_dssp -----CCEEEEEETTSCEEEEEEEEECT-TCCEEEEEEEEECTTSC---------EEEEEEEEEECGGGEE
T ss_pred HHHhCCCEEEEEECCCCEEEEEEEEEcC-CceEEEEEEEEEccCCc---------eeeEcCeEEEeCCeEE
Confidence 4578999999999999999999999994 6789999998 643321 1234688999999999
No 24
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=91.89 E-value=0.22 Score=45.60 Aligned_cols=54 Identities=17% Similarity=0.281 Sum_probs=47.3
Q ss_pred cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191 18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (613)
Q Consensus 18 ~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK 86 (613)
..++|++|.+.-|.+-.|+|+|..+| +.--|.|+|+. + . ..-|..|+.||+.|.
T Consensus 6 ~~~igk~V~V~Lk~G~~~~G~L~~~D-~~MNlvL~d~~E~--~------------~~~lg~v~IRG~nI~ 60 (130)
T 1m5q_A 6 NNLLGREVQVVLSNGEVYKGVLHAVD-NQLNIVLANASNK--A------------GEKFNRVFIMYRYIV 60 (130)
T ss_dssp HHTTTSEEEEEETTSCEEEEEEEEEC-TTCCEEEEEEECT--T------------CCEEEEEEECGGGEE
T ss_pred HHhCCCeEEEEECCCcEEEEEEEEEc-ccceeEEeeEEEE--c------------CCEeceEEEeCCeEE
Confidence 46899999999999999999999999 67889999988 6 1 145778999999998
No 25
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=91.63 E-value=0.21 Score=40.96 Aligned_cols=58 Identities=21% Similarity=0.318 Sum_probs=48.1
Q ss_pred cccccceeEEEecCC-ceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191 18 DSYIGSLISLTSKSE-IRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (613)
Q Consensus 18 ~~~IGs~ISLISks~-IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK 86 (613)
..++|++|.+.-|.+ -.|+|+|..+| +.--+.|+||. +-..+ ...-+..++.||+.|.
T Consensus 11 ~~~~~~~v~V~lk~g~~~~~G~L~~~D-~~mNlvL~d~~e~~~~~----------~~~~lg~v~iRG~nI~ 70 (77)
T 1ljo_A 11 KSMVGKIIRVEMKGEENQLVGKLEGVD-DYMNLYLTNAMECKGEE----------KVRSLGEIVLRGNNVV 70 (77)
T ss_dssp HHTTTSEEEEEETTCSSEEEEEEEEEC-TTCCEEEEEEEEEETTE----------EEEEEEEEEECGGGEE
T ss_pred HHHCCCEEEEEEeCCCEEEEEEEEEEC-CcceEEEeeEEEEecCC----------cEeECCeEEEeCCeEE
Confidence 468999999999999 99999999999 67889999998 65311 1234677999999998
No 26
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=90.87 E-value=0.3 Score=42.09 Aligned_cols=66 Identities=12% Similarity=0.188 Sum_probs=49.9
Q ss_pred CcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191 17 ADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (613)
Q Consensus 17 ~~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK 86 (613)
...+||++|.++-|.+-.|+|+|..+| +---|.|.|+. +=++.-+.. .-....-+..++.||+.|.
T Consensus 15 L~~~i~k~V~V~Lk~gr~~~G~L~~fD-~~mNlVL~d~~E~~~~~~~~~---~~~~~r~lG~v~IRG~nVv 81 (96)
T 3bw1_A 15 LKLNLDERVYIKLRGARTLVGTLQAFD-SHCNIVLSDAVETIYQLNNEE---LSESERRCEMVFIRGDTVT 81 (96)
T ss_dssp HGGGTTSEEEEEEGGGCEEEEEEEEEC-TTCCEEEEEEEEEEECCSTTC---CCEEEEEEEEEEECGGGEE
T ss_pred HHHHCCCeEEEEECCCcEEEEEEEEEC-CCCcEEEcCEEEEeccccccc---cCcceeEcCEEEECCCEEE
Confidence 357999999999999999999999999 67889999998 654322110 1111233567899999998
No 27
>2wax_B Enhancer of mRNA-decapping protein 3; DEAD-box protein, nucleotide-binding, RCK, miRNA, P-bodies, helicase, RNA-binding, proto-oncogene; HET: CXS; 2.30A {Homo sapiens} PDB: 2way_B
Probab=90.60 E-value=0.059 Score=41.49 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.4
Q ss_pred cccccHHHHhhhhchhhhhhcccC
Q 007191 479 TEDFDFIAMNEKFNKDEVWGHLGK 502 (613)
Q Consensus 479 ~eDFDFea~NeKFnKDEv~g~LgK 502 (613)
.+|||||...++|+|..||.++.+
T Consensus 17 ~~dFDFE~NLalFdKq~Vf~~~~~ 40 (44)
T 2wax_B 17 DTDFDFEGNLALFDKAAVFEEIDT 40 (44)
T ss_dssp SSCCCHHHHHTTCCHHHHHHHHHH
T ss_pred cccccHHHHHHHHhHHHHHHHHhc
Confidence 699999999999999999977643
No 28
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=90.39 E-value=0.23 Score=42.85 Aligned_cols=60 Identities=13% Similarity=0.230 Sum_probs=48.1
Q ss_pred CCcccccceeEEEecCC-ceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191 16 SADSYIGSLISLTSKSE-IRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (613)
Q Consensus 16 ~~~~~IGs~ISLISks~-IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK 86 (613)
--..++|++|.+.-|.+ ..|+|+|..+| +---|.|+||. +- ++. . ..-++.|+.||+.|.
T Consensus 25 ~L~~~i~k~V~V~Lk~g~~~~~G~L~~~D-~~MNlvL~d~~E~~-~~~----~-----~~~lg~v~IRG~nI~ 86 (93)
T 1n9r_A 25 FLKGLVNHRVGVKLKFNSTEYRGTLVSTD-NYFNLQLNEAEEFV-AGV----S-----HGTLGEIFIRCNNVL 86 (93)
T ss_dssp -CGGGTTSEEEEEESSTTEEEEEEEEECC-TTTCEEEEEEEEEE-TTE----E-----EEECCSEEECGGGEE
T ss_pred HHHHhCCCEEEEEEcCCCEEEEEEEEEEc-cccEEEEeeEEEEc-CCC----e-----EeEcCEEEEcCCeEE
Confidence 55789999999999999 99999999999 67889999998 63 211 0 123567999999998
No 29
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=89.18 E-value=0.37 Score=40.79 Aligned_cols=58 Identities=17% Similarity=0.293 Sum_probs=47.0
Q ss_pred cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191 18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (613)
Q Consensus 18 ~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK 86 (613)
..++|++|.+.-|.+-.|+|+|..+|. .--|.|+||. +- +| . ...-+..++.||+.|.
T Consensus 12 ~~~~~k~V~V~Lk~g~~~~G~L~~~D~-~mNlvL~d~~e~~-~g-----~----~~~~lg~v~IRG~nI~ 70 (86)
T 3s6n_F 12 NGLTGKPVMVKLKWGMEYKGYLVSVDG-YMNMQLANTEEYI-DG-----A----LSGHLGEVLIRCNNVL 70 (86)
T ss_dssp HHHTTSEEEEEETTSCEEEEEEEEECT-TCCEEEEEEEEEE-TT-----E----EEEEESSEEECGGGEE
T ss_pred HHhCCCeEEEEEcCCeEEEEEEEEEcC-ceEEEEeeEEEEc-CC-----c----eeeEccEEEEeCCeEE
Confidence 468999999999999999999999995 6789999998 63 11 1 1123567999999999
No 30
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=86.79 E-value=0.11 Score=46.24 Aligned_cols=26 Identities=8% Similarity=0.119 Sum_probs=16.6
Q ss_pred chhcccccccccCCCCCCCCcccccccC
Q 007191 534 DFFDSLSCDALNRGSHNGRPRFSEQVRR 561 (613)
Q Consensus 534 sFFDnIScn~ldr~GRn~RldfseeRk~ 561 (613)
.+.+.|++..+ .++..+++|++.++.
T Consensus 96 ~Ai~~l~g~~~--~g~~l~V~~a~~~~~ 121 (156)
T 1h2v_Z 96 NAMRYINGTRL--DDRIIRTDWDAGFKE 121 (156)
T ss_dssp HHHHHTTTSEE--TTEECEEEEESCCCT
T ss_pred HHHHHhCCCEE--CCeEEEEEECCCCCC
Confidence 45555555555 367778888876553
No 31
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=86.63 E-value=0.87 Score=39.08 Aligned_cols=67 Identities=13% Similarity=0.247 Sum_probs=48.5
Q ss_pred cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCC----CCCCCCCceeeEEEEcCccc
Q 007191 18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGP----QVPPSDKIYEYILFRGSDIK 86 (613)
Q Consensus 18 ~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~----~Ipps~~vyeyIvFrgsDIK 86 (613)
..+||++|.+.-|.+-.|+|+|..+| +.--|.|.|+. +-++-.+ ++. ..-.....+..|+.||..|.
T Consensus 15 ~~~~~~~V~V~l~~gr~~~G~L~~~D-~~mNlvL~d~~E~~~~~~~-~~~~~~~~~~~~~r~lG~v~iRG~nVv 86 (93)
T 4emg_A 15 RLSLDEIVYVKLRGDRELNGRLHAYD-EHLNMVLGDAEEIVTIFDD-EETDKDKALKTIRKHYEMLFVRGDSVI 86 (93)
T ss_dssp HTTTTSEEEEEETTTEEEEEEEEEEC-TTCCEEEEEEEEEEC---------------CEEEEEEEEEECGGGEE
T ss_pred HHhCCCEEEEEECCCcEEEEEEEEEC-CcccEEeecEEEEEecccc-CCccccccccccEeEeceEEECCCeEE
Confidence 45699999999999999999999999 57889999999 7654111 110 01122345778999999987
No 32
>3d3j_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.80A {Homo sapiens}
Probab=86.54 E-value=0.13 Score=52.56 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=0.0
Q ss_pred cccHHHHhhhhchhhhhhcccCC
Q 007191 481 DFDFIAMNEKFNKDEVWGHLGKS 503 (613)
Q Consensus 481 DFDFea~NeKFnKDEv~g~LgK~ 503 (613)
|||||+..++|+|..||.+|.+.
T Consensus 1 dfdf~~nl~~fdk~~vf~e~~~~ 23 (306)
T 3d3j_A 1 DFDFEGNLALFDKAAVFEEIDTY 23 (306)
T ss_dssp -----------------------
T ss_pred CcchhHHHHHhhhHHHHHHHhcc
Confidence 89999999999999999988654
No 33
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=81.05 E-value=0.32 Score=46.90 Aligned_cols=23 Identities=17% Similarity=0.118 Sum_probs=12.8
Q ss_pred chhcccccccccCCCCCCCCccccc
Q 007191 534 DFFDSLSCDALNRGSHNGRPRFSEQ 558 (613)
Q Consensus 534 sFFDnIScn~ldr~GRn~Rldfsee 558 (613)
.+.+.|++..+ .+|..+++|++.
T Consensus 127 ~Ai~~lng~~~--~Gr~l~V~~a~~ 149 (229)
T 3q2s_C 127 KLMDLLPKREL--HGQNPVVTPVNK 149 (229)
T ss_dssp HHHTTSTTSCB--TTBCCEEEECCH
T ss_pred HHHHHcCCCeE--CCEEeEEEECCC
Confidence 44444444444 366677777653
No 34
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=79.30 E-value=3.4 Score=36.73 Aligned_cols=67 Identities=10% Similarity=0.229 Sum_probs=45.6
Q ss_pred ccc--cceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCC-CCCCC---CCCCCceeeEEEEcCccc
Q 007191 19 SYI--GSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEK-IGPQV---PPSDKIYEYILFRGSDIK 86 (613)
Q Consensus 19 ~~I--Gs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~-~~~~I---pps~~vyeyIvFrgsDIK 86 (613)
.++ +++|.+.-+.+-.|+|+|..+| +.--|.|.||. +-++.-+. .+.+. --.+..+..|+.||+.|.
T Consensus 34 ~~~~~~k~V~V~Lk~gr~~~G~L~~fD-~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~nVv 107 (118)
T 1b34_B 34 QSVKNNTQVLINCRNNKKLLGRVKAFD-RHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVI 107 (118)
T ss_dssp HHHHHTCEEEEEETTSCEEEEEEEEEC-TTCCEEEEEEEEC-------------------CEEEEEEEECGGGEE
T ss_pred HHhcCCcEEEEEECCCcEEEEEEEEeC-CceEEEEeCEEEEEecccccccccccccccccccCcCeEEEcCCEEE
Confidence 456 5999999999999999999999 78899999998 65432110 01000 001224778999999998
No 35
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=78.76 E-value=2 Score=37.02 Aligned_cols=59 Identities=20% Similarity=0.376 Sum_probs=45.0
Q ss_pred cccccceeEE----EecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCCceeeEEEEcCccc
Q 007191 18 DSYIGSLISL----TSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK 86 (613)
Q Consensus 18 ~~~IGs~ISL----ISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTEgR~~~~~~Ipps~~vyeyIvFrgsDIK 86 (613)
..|+++++.+ +.|.+..|+|+|..+| +---|.|+|+. +-+++. ....+.-|+.||+.|.
T Consensus 22 ~~~l~~~v~V~l~~~~~~gr~~~G~L~gfD-~~mNlvL~d~~E~~~~~~---------~~~~lg~v~iRG~nV~ 85 (92)
T 3s6n_E 22 FRYLQNRSRIQVWLYEQVNMRIEGCIIGFD-EYMNLVLDDAEEIHSKTK---------SRKQLGRIMLKGDNIT 85 (92)
T ss_dssp HHHHHHTCEEEEEESSSCSSEEEEEEEEEC-TTCCEEEEEEEEECSSSC---------CEEEEEEEEECGGGEE
T ss_pred HHHhCCCEEEEEEEEecCCEEEEEEEEEEc-CcCcEEEeeeEEEecCCC---------ceeEcCeEEEeCCEEE
Confidence 3577888554 4599999999999999 57889999988 754321 1335677999999988
No 36
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=60.55 E-value=4.7 Score=33.45 Aligned_cols=42 Identities=17% Similarity=0.396 Sum_probs=32.6
Q ss_pred cccccceeEEEecCCceeEEEeeeecCCCCeeeecccc--cccCCC
Q 007191 18 DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR--LEQKGE 61 (613)
Q Consensus 18 ~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr--fGTEgR 61 (613)
+.+.|.||-|--.++..|.|||...| +-+|-|+||. -|..++
T Consensus 12 ~~WKg~rvAv~vg~ehSFtGiledFD--eEviLL~dV~D~~GNk~k 55 (71)
T 1ycy_A 12 KEWKGHKVAVSVGGDHSFTGTLEDFD--EEVILLKDVVDVIGNRGK 55 (71)
T ss_dssp HHHTTSEEEEEEC----CEEEEEEEC--SSEEEEEEEEETTEEEEE
T ss_pred HHhCCcEEEEEecCcceeeeehhhcC--cceeehhhHHHHhccccc
Confidence 45789999999999999999999999 7799999999 565444
No 37
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=52.41 E-value=9.1 Score=40.49 Aligned_cols=25 Identities=0% Similarity=-0.062 Sum_probs=16.0
Q ss_pred chhcccccccccCCCCCCCCccccccc
Q 007191 534 DFFDSLSCDALNRGSHNGRPRFSEQVR 560 (613)
Q Consensus 534 sFFDnIScn~ldr~GRn~RldfseeRk 560 (613)
.++..|++-.+ .|+..++.|+..+.
T Consensus 159 ~Ai~~lng~~i--~gr~i~V~~a~~~~ 183 (437)
T 3pgw_S 159 SAYKHADGKKI--DGRRVLVDVERGRT 183 (437)
T ss_pred HHHHHcCCCEE--CCEEEEEEEeCCCC
Confidence 45555565555 46777788887654
No 38
>3u5c_h Suppressor protein STM1; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_h
Probab=29.04 E-value=12 Score=38.36 Aligned_cols=11 Identities=18% Similarity=0.184 Sum_probs=0.0
Q ss_pred CccC-ccCCCCC
Q 007191 561 RDTE-TFGDFPR 571 (613)
Q Consensus 561 ~dtE-TFG~~~r 571 (613)
++.+ +|-....
T Consensus 207 Leid~~F~~~~~ 218 (273)
T 3u5c_h 207 LEFDATFVESNT 218 (273)
T ss_dssp ------------
T ss_pred EEecCEEcCCCC
Confidence 5555 6665444
No 39
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=24.49 E-value=48 Score=25.43 Aligned_cols=38 Identities=16% Similarity=0.277 Sum_probs=32.0
Q ss_pred ccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccC
Q 007191 21 IGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQK 59 (613)
Q Consensus 21 IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~nVr-fGTE 59 (613)
.|.++.+++=.---++|++..||.++..+.+. |. ||.|
T Consensus 7 ~Gd~V~V~~Gpf~g~~g~v~~v~~~k~~v~V~-v~~~Gr~ 45 (58)
T 1nz9_A 7 EGDQVRVVSGPFADFTGTVTEINPERGKVKVM-VTIFGRE 45 (58)
T ss_dssp TTCEEEECSGGGTTCEEEEEEEETTTTEEEEE-EESSSSE
T ss_pred CCCEEEEeecCCCCcEEEEEEEcCCCCEEEEE-EEeCCCE
Confidence 68889999888888999999999998888775 77 8843
No 40
>3u5c_h Suppressor protein STM1; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_h
Probab=23.76 E-value=17 Score=37.24 Aligned_cols=10 Identities=0% Similarity=-0.037 Sum_probs=4.9
Q ss_pred cccHHHHhhh
Q 007191 481 DFDFIAMNEK 490 (613)
Q Consensus 481 DFDFea~NeK 490 (613)
+++.|..-|.
T Consensus 116 El~dE~age~ 125 (273)
T 3u5c_h 116 ELSAEKEAQA 125 (273)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 4555544444
No 41
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.19 E-value=72 Score=26.63 Aligned_cols=38 Identities=16% Similarity=0.322 Sum_probs=33.2
Q ss_pred CCcccccceeEEEecCCceeEEEeeeecCCCCeeeecc
Q 007191 16 SADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRN 53 (613)
Q Consensus 16 ~~~~~IGs~ISLISks~IRYeGiL~~Id~e~sTv~L~n 53 (613)
.-+++||+.|.|+.=----|-||+.+++-....|-|.-
T Consensus 15 grd~liGktV~I~kGpyKG~~GiVkd~t~~~~RVELhs 52 (71)
T 2e70_A 15 RDNELIGQTVRISQGPYKGYIGVVKDATESTARVELHS 52 (71)
T ss_dssp CTTSSTTSEEEECSSTTTTCEEEEEEECSSCEEEEESS
T ss_pred CccccCCCEEEEeccCCCCeEEEEEECCCCeEEEEecC
Confidence 35789999999999999999999999998888887754
Done!