BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007192
(613 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GP4|A Chain A, Structure Of [fes]cluster-free Apo Form Of
6-phosphogluconate Dehydratase From Shewanella
Oneidensis
pdb|2GP4|B Chain B, Structure Of [fes]cluster-free Apo Form Of
6-phosphogluconate Dehydratase From Shewanella
Oneidensis
Length = 628
Score = 162 bits (411), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 135/515 (26%), Positives = 238/515 (46%), Gaps = 35/515 (6%)
Query: 88 MSKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTI-GVSDAISMGTKGM 146
++K +GI + + + + + + +K+ +E G V + D ++ G G
Sbjct: 83 LTKANIGIITAFNDXLSAHQPYETYPDLLKKACQEVGSVAQVAGGVPAXCDGVTQGQPGX 142
Query: 147 CFSLQSRDLIADSIETVMSAQWYDANISIPGCDKNMPGTIM-AMGRLNRPGIMVYGGTIK 205
SL SR++IA + +S +D + + CDK +PG ++ A+ + P + V G K
Sbjct: 143 ELSLLSREVIAXATAVGLSHNXFDGALLLGICDKIVPGLLIGALSFGHLPXLFVPAGPXK 202
Query: 206 PGHFQGHTYDIVSAFQVYGEYVSGSISDEQRMNVVLNSCPGAGACGGMYTANTMASAIEA 265
G ++ ++ G + Q + S AG C TAN+ +E
Sbjct: 203 SG------IPNKEKARIRQQFAQGKVDRAQLLEAEAQSYHSAGTCTFYGTANSNQLXLEV 256
Query: 266 MGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRMDLKPR---DIITKKSLRNAMVIVMA 322
G+ LP SS + +DPL+ + A K + L + + +++ +KS+ N +V ++A
Sbjct: 257 XGLQLPGSSFVNPDDPLREALNKXAAKQVCRLTELGTQYSPIGEVVNEKSIVNGIVALLA 316
Query: 323 LGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVPFLADLKPSGKYVMEDVHKIGGTPAV 382
GGSTN H++A AR+ G+ ++ D+F ++SD VP LA + P+G + H GG +
Sbjct: 317 TGGSTNLTXHIVAAARAAGIIVNWDDFSELSDAVPLLARVYPNGHADINHFHAAGGXAFL 376
Query: 383 IRYLLELGFLDGDCMTVTGKTLAENAKTFPHLSEGQ-------------DIIRPLSNPIK 429
I+ LL+ G L D TV G L + P L +G+ +++ ++ P +
Sbjct: 377 IKELLDAGLLHEDVNTVAGYGLRRYTQE-PKLLDGELRWVDGPTVSLDTEVLTSVATPFQ 435
Query: 430 KTGHIQVLRGNLAPEGSVAKITGKEGLY--FSGPALVFEGEESMIAAISEDPMSFKGKVV 487
G +++L+GNL +V K++ + + PA+V + + + A + VV
Sbjct: 436 NNGGLKLLKGNLGR--AVIKVSAVQPQHRVVEAPAVVIDDQNKLDALFKSGALDRDCVVV 493
Query: 488 VIRXXXXXXXXXXXXXLTPTSAIMGA--GLGKEVALLTDGRXXXXXXXX-XXXXXCPEAQ 544
V LTP ++G+ G +VAL TDGR PEA
Sbjct: 494 VKGQGPKANGXPELHKLTP---LLGSLQDKGFKVALXTDGRXSGASGKVPAAIHLTPEAI 550
Query: 545 DGGPIGLIQNGDIINIDVQKRRIDVQLTDEEMEER 579
DGG I +Q+GD+I +D + + ++D E+ R
Sbjct: 551 DGGLIAKVQDGDLIRVDALTGELSLLVSDTELATR 585
>pdb|3FBU|A Chain A, The Crystal Structure Of The Acetyltransferase (gnat
Family) From Bacillus Anthracis
pdb|3FBU|B Chain B, The Crystal Structure Of The Acetyltransferase (gnat
Family) From Bacillus Anthracis
Length = 168
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 371 EDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFPHLSEGQDII 421
E VH+ V++Y+ E F + D K + ENAK FP + G++I+
Sbjct: 19 EAVHEYTSDSDVMKYIPEGVFTEEDTRNFVNKNMGENAKNFPVILIGENIL 69
>pdb|1F61|A Chain A, Crystal Structure Of Isocitrate Lyase From Mycobacterium
Tuberculosis
pdb|1F61|B Chain B, Crystal Structure Of Isocitrate Lyase From Mycobacterium
Tuberculosis
pdb|1F8M|A Chain A, Crystal Structure Of 3-Bromopyruvate Modified Isocitrate
Lyase (Icl) From Mycobacterium Tuberculosis
pdb|1F8M|B Chain B, Crystal Structure Of 3-Bromopyruvate Modified Isocitrate
Lyase (Icl) From Mycobacterium Tuberculosis
pdb|1F8M|C Chain C, Crystal Structure Of 3-Bromopyruvate Modified Isocitrate
Lyase (Icl) From Mycobacterium Tuberculosis
pdb|1F8M|D Chain D, Crystal Structure Of 3-Bromopyruvate Modified Isocitrate
Lyase (Icl) From Mycobacterium Tuberculosis
Length = 429
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 30/55 (54%)
Query: 420 IIRPLSNPIKKTGHIQVLRGNLAPEGSVAKITGKEGLYFSGPALVFEGEESMIAA 474
++R ++N +++ I + G+ + E +A I F G V+E ++++IAA
Sbjct: 121 VVRRINNALQRADQIAKIEGDTSVENWLAPIVADGEAGFGGALNVYELQKALIAA 175
>pdb|1F8I|A Chain A, Crystal Structure Of Isocitrate
Lyase:nitropropionate:glyoxylate Complex From
Mycobacterium Tuberculosis
pdb|1F8I|B Chain B, Crystal Structure Of Isocitrate
Lyase:nitropropionate:glyoxylate Complex From
Mycobacterium Tuberculosis
pdb|1F8I|C Chain C, Crystal Structure Of Isocitrate
Lyase:nitropropionate:glyoxylate Complex From
Mycobacterium Tuberculosis
pdb|1F8I|D Chain D, Crystal Structure Of Isocitrate
Lyase:nitropropionate:glyoxylate Complex From
Mycobacterium Tuberculosis
Length = 429
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 30/55 (54%)
Query: 420 IIRPLSNPIKKTGHIQVLRGNLAPEGSVAKITGKEGLYFSGPALVFEGEESMIAA 474
++R ++N +++ I + G+ + E +A I F G V+E ++++IAA
Sbjct: 121 VVRRINNALQRADQIAKIEGDTSVENWLAPIVADGEAGFGGALNVYELQKALIAA 175
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,821,975
Number of Sequences: 62578
Number of extensions: 668250
Number of successful extensions: 1868
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1861
Number of HSP's gapped (non-prelim): 4
length of query: 613
length of database: 14,973,337
effective HSP length: 105
effective length of query: 508
effective length of database: 8,402,647
effective search space: 4268544676
effective search space used: 4268544676
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)