Query 007192
Match_columns 613
No_of_seqs 165 out of 1264
Neff 4.4
Searched_HMMs 46136
Date Thu Mar 28 20:12:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007192.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007192hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00911 dihydroxy-acid dehydr 100.0 9E-215 2E-219 1728.8 59.0 550 60-612 1-550 (552)
2 TIGR00110 ilvD dihydroxy-acid 100.0 4E-211 9E-216 1697.2 57.9 532 80-612 1-535 (535)
3 PRK12448 dihydroxy-acid dehydr 100.0 7E-210 1E-214 1700.4 58.5 553 59-612 2-609 (615)
4 COG0129 IlvD Dihydroxyacid deh 100.0 7E-209 1E-213 1680.7 58.0 555 57-612 8-571 (575)
5 PRK06131 dihydroxy-acid dehydr 100.0 2E-206 4E-211 1668.4 58.4 541 61-612 6-556 (571)
6 PRK13016 dihydroxy-acid dehydr 100.0 3E-206 6E-211 1667.3 59.0 541 61-612 10-561 (577)
7 PF00920 ILVD_EDD: Dehydratase 100.0 4E-209 8E-214 1676.0 20.7 519 90-609 1-521 (521)
8 PRK13017 dihydroxy-acid dehydr 100.0 6E-204 1E-208 1651.3 60.4 544 60-612 11-577 (596)
9 TIGR01196 edd 6-phosphoglucona 100.0 2E-192 5E-197 1559.6 52.2 516 84-611 58-599 (601)
10 PRK09054 phosphogluconate dehy 100.0 6E-191 1E-195 1550.8 56.5 514 86-611 61-600 (603)
11 TIGR03432 yjhG_yagF probable d 100.0 1E-188 2E-193 1536.4 55.2 528 80-612 45-632 (640)
12 PRK08211 putative dehydratase; 100.0 1E-184 3E-189 1502.9 56.9 528 80-612 51-638 (655)
13 KOG2448 Dihydroxy-acid dehydra 100.0 2E-184 5E-189 1412.3 44.5 562 52-613 31-596 (596)
14 PRK11366 puuD gamma-glutamyl-g 93.0 0.59 1.3E-05 48.2 9.7 43 88-132 5-47 (254)
15 PRK09372 ribonuclease activity 89.1 2.9 6.3E-05 40.8 9.5 99 457-563 31-149 (159)
16 TIGR01935 NOT-MenG RraA famliy 85.4 3.5 7.6E-05 39.9 7.7 100 457-564 27-146 (150)
17 PRK12487 ribonuclease activity 85.2 6.1 0.00013 38.9 9.3 108 457-576 31-158 (163)
18 PRK08296 hypothetical protein; 82.3 3.1 6.6E-05 48.5 6.9 91 455-570 507-602 (603)
19 PF06792 UPF0261: Uncharacteri 81.9 7 0.00015 43.5 9.2 88 87-202 182-279 (403)
20 PRK14690 molybdopterin biosynt 81.5 20 0.00044 39.9 12.6 122 65-209 166-299 (419)
21 COG0303 MoeA Molybdopterin bio 79.2 25 0.00054 39.2 12.3 126 64-209 148-283 (404)
22 TIGR02798 ligK_PcmE 4-carboxy- 79.0 13 0.00029 38.1 9.5 104 457-569 48-172 (222)
23 PRK06241 phosphoenolpyruvate s 78.6 2.1 4.5E-05 51.6 4.2 93 452-570 772-869 (871)
24 TIGR02998 RraA_entero regulato 78.2 17 0.00037 35.7 9.6 100 457-564 31-150 (161)
25 PRK10680 molybdopterin biosynt 77.8 31 0.00067 38.4 12.6 115 71-208 157-282 (411)
26 cd03522 MoeA_like MoeA_like. T 76.6 18 0.0004 38.8 10.1 112 75-208 143-259 (312)
27 COG2071 Predicted glutamine am 73.0 17 0.00037 38.0 8.5 96 88-207 1-121 (243)
28 PRK09262 hypothetical protein; 73.0 17 0.00036 37.4 8.4 103 457-569 50-174 (225)
29 PRK14497 putative molybdopteri 72.5 53 0.0011 38.2 13.0 115 71-209 159-285 (546)
30 PRK14491 putative bifunctional 69.0 51 0.0011 38.4 12.1 122 65-209 340-473 (597)
31 PRK02399 hypothetical protein; 68.3 18 0.0004 40.4 8.0 88 87-202 183-280 (406)
32 cd00887 MoeA MoeA family. Memb 66.8 50 0.0011 36.3 10.9 90 71-178 148-244 (394)
33 PLN02699 Bifunctional molybdop 66.0 72 0.0016 37.8 12.6 119 71-208 161-288 (659)
34 PRK06201 hypothetical protein; 65.9 33 0.00072 35.0 8.7 103 457-568 52-175 (221)
35 PRK14498 putative molybdopteri 65.1 69 0.0015 37.2 12.2 115 71-208 166-291 (633)
36 PRK03955 hypothetical protein; 62.6 13 0.00029 35.4 4.8 103 458-570 13-129 (131)
37 cd06305 PBP1_methylthioribose_ 62.4 58 0.0013 31.9 9.6 87 93-201 2-88 (273)
38 TIGR01418 PEP_synth phosphoeno 56.9 39 0.00086 40.6 8.5 103 457-585 364-474 (782)
39 COG2313 IndA Uncharacterized e 56.8 49 0.0011 35.3 8.1 183 89-322 24-223 (310)
40 PF00885 DMRL_synthase: 6,7-di 55.9 22 0.00048 34.1 5.2 90 88-200 1-106 (144)
41 PRK08245 hypothetical protein; 55.5 31 0.00067 35.6 6.5 89 471-569 78-185 (240)
42 COG1224 TIP49 DNA helicase TIP 54.7 28 0.00061 38.9 6.2 154 283-492 43-198 (450)
43 PRK12764 hypothetical protein; 54.3 22 0.00047 40.7 5.6 90 471-569 336-443 (500)
44 PRK05865 hypothetical protein; 54.1 20 0.00044 43.5 5.6 92 453-570 741-837 (854)
45 PF02969 TAF: TATA box binding 52.4 16 0.00034 31.0 3.2 58 253-318 3-66 (66)
46 PRK06455 riboflavin synthase; 47.4 53 0.0011 32.4 6.3 83 92-200 3-98 (155)
47 PF07722 Peptidase_C26: Peptid 47.0 25 0.00054 35.4 4.2 43 91-133 1-46 (217)
48 TIGR03798 ocin_TIGR03798 bacte 46.2 21 0.00045 29.5 2.9 23 330-352 27-49 (64)
49 PRK09417 mogA molybdenum cofac 46.1 1E+02 0.0022 31.0 8.3 75 88-177 1-75 (193)
50 cd01391 Periplasmic_Binding_Pr 45.6 1.7E+02 0.0036 27.4 9.3 91 93-203 2-92 (269)
51 KOG3148 Glucosamine-6-phosphat 44.5 57 0.0012 33.5 6.2 69 101-173 98-178 (273)
52 cd01574 PBP1_LacI Ligand-bindi 43.9 2.4E+02 0.0052 27.4 10.4 86 92-200 1-86 (264)
53 TIGR02417 fruct_sucro_rep D-fr 43.3 3.7E+02 0.008 27.5 12.1 103 75-200 38-147 (327)
54 cd06312 PBP1_ABC_sugar_binding 43.1 1.7E+02 0.0037 28.8 9.4 89 93-201 2-90 (271)
55 cd00377 ICL_PEPM Members of th 42.4 3.2E+02 0.0069 28.2 11.4 53 325-377 157-219 (243)
56 cd06295 PBP1_CelR Ligand bindi 41.4 2.5E+02 0.0055 27.6 10.3 87 92-200 5-94 (275)
57 COG2914 Uncharacterized protei 40.8 25 0.00055 32.2 2.8 28 550-582 63-90 (99)
58 PRK11303 DNA-binding transcrip 40.7 3E+02 0.0065 28.1 11.0 103 75-200 39-148 (328)
59 TIGR02667 moaB_proteo molybden 40.6 1.2E+02 0.0025 29.5 7.6 68 88-174 2-69 (163)
60 cd01544 PBP1_GalR Ligand-bindi 40.6 1.6E+02 0.0035 29.1 8.7 80 92-200 1-81 (270)
61 cd01545 PBP1_SalR Ligand-bindi 38.8 2.3E+02 0.0051 27.5 9.5 86 93-200 2-87 (270)
62 PRK01215 competence damage-ind 38.6 1.1E+02 0.0024 32.1 7.6 61 88-165 1-61 (264)
63 KOG3135 1,4-benzoquinone reduc 38.3 39 0.00084 34.1 3.9 165 91-300 2-199 (203)
64 PRK07028 bifunctional hexulose 37.8 1.6E+02 0.0034 32.7 9.0 102 457-569 262-385 (430)
65 PRK15395 methyl-galactoside AB 37.6 2.2E+02 0.0048 29.8 9.6 92 89-201 23-114 (330)
66 cd01542 PBP1_TreR_like Ligand- 37.5 2.7E+02 0.0058 27.0 9.6 85 92-200 1-85 (259)
67 cd04509 PBP1_ABC_transporter_G 36.5 2.2E+02 0.0047 27.6 8.8 95 92-203 1-101 (299)
68 PRK14987 gluconate operon tran 36.2 4.1E+02 0.0088 27.3 11.2 102 75-200 41-149 (331)
69 PF07862 Nif11: Nitrogen fixat 35.5 32 0.00069 26.7 2.3 20 330-349 29-48 (49)
70 PRK06464 phosphoenolpyruvate s 34.4 1.1E+02 0.0024 37.0 7.6 88 457-573 366-465 (795)
71 PRK00061 ribH 6,7-dimethyl-8-r 33.0 1E+02 0.0023 30.1 5.9 87 89-198 11-113 (154)
72 cd01537 PBP1_Repressors_Sugar_ 31.8 4.5E+02 0.0097 24.9 10.0 88 93-203 2-89 (264)
73 PRK10703 DNA-binding transcrip 31.7 5.6E+02 0.012 26.3 11.3 105 75-203 37-149 (341)
74 cd06284 PBP1_LacI_like_6 Ligan 31.5 3.6E+02 0.0078 26.1 9.4 74 106-200 11-84 (267)
75 cd06323 PBP1_ribose_binding Pe 31.3 3.1E+02 0.0066 26.6 8.9 78 106-201 11-88 (268)
76 PRK10991 fucI L-fucose isomera 30.7 9.9E+02 0.021 28.5 14.1 99 89-202 3-139 (588)
77 cd06314 PBP1_tmGBP Periplasmic 30.5 3.5E+02 0.0076 26.6 9.3 85 93-200 2-86 (271)
78 cd06320 PBP1_allose_binding Pe 30.3 3.6E+02 0.0078 26.5 9.3 78 106-200 11-89 (275)
79 cd06268 PBP1_ABC_transporter_L 30.3 3.2E+02 0.0069 26.4 8.8 92 93-202 2-99 (298)
80 cd06310 PBP1_ABC_sugar_binding 30.1 3.9E+02 0.0085 26.1 9.5 88 93-201 2-90 (273)
81 cd06279 PBP1_LacI_like_3 Ligan 30.0 3.9E+02 0.0085 26.7 9.6 86 92-201 1-87 (283)
82 cd06300 PBP1_ABC_sugar_binding 29.7 3.7E+02 0.008 26.4 9.3 90 92-201 1-93 (272)
83 cd00758 MoCF_BD MoCF_BD: molyb 29.3 2.3E+02 0.0049 26.2 7.2 93 92-208 1-99 (133)
84 PRK06354 pyruvate kinase; Prov 29.1 2.1E+02 0.0045 33.8 8.4 88 457-568 492-583 (590)
85 cd00952 CHBPH_aldolase Trans-o 29.0 2.7E+02 0.0059 29.6 8.7 166 110-296 120-308 (309)
86 PRK06565 amidase; Validated 28.9 93 0.002 36.4 5.6 49 159-207 457-526 (566)
87 TIGR03282 methan_mark_13 putat 28.8 1.4E+02 0.003 33.1 6.5 205 152-411 59-278 (352)
88 cd06319 PBP1_ABC_sugar_binding 28.8 4.7E+02 0.01 25.6 9.8 77 106-201 11-88 (277)
89 PF11720 Inhibitor_I78: Peptid 28.5 33 0.00071 28.2 1.4 29 546-574 23-51 (60)
90 PRK10014 DNA-binding transcrip 28.5 6E+02 0.013 26.1 10.9 104 75-201 42-152 (342)
91 COG2515 Acd 1-aminocyclopropan 27.5 1.4E+02 0.0031 32.6 6.2 83 109-200 130-214 (323)
92 cd06292 PBP1_LacI_like_10 Liga 27.3 6E+02 0.013 24.9 10.3 87 92-200 1-90 (273)
93 cd06271 PBP1_AglR_RafR_like Li 27.2 3.8E+02 0.0081 26.0 8.7 88 93-200 2-89 (268)
94 cd01536 PBP1_ABC_sugar_binding 26.6 5.6E+02 0.012 24.5 9.8 88 93-202 2-89 (267)
95 KOG1506 S-adenosylmethionine s 26.2 26 0.00057 37.6 0.5 95 126-241 184-280 (383)
96 PRK10653 D-ribose transporter 26.1 6.3E+02 0.014 25.5 10.4 92 87-200 23-114 (295)
97 cd00886 MogA_MoaB MogA_MoaB fa 25.6 3.4E+02 0.0073 25.7 7.8 66 92-174 2-67 (152)
98 cd06297 PBP1_LacI_like_12 Liga 25.6 6.3E+02 0.014 24.9 10.2 84 93-200 2-85 (269)
99 TIGR02369 trimeth_pyl trimethy 24.9 3.2E+02 0.0069 31.6 8.7 128 179-332 225-363 (489)
100 cd06307 PBP1_uncharacterized_s 24.9 4.4E+02 0.0095 26.0 8.8 79 106-200 11-90 (275)
101 cd06270 PBP1_GalS_like Ligand 24.8 6.6E+02 0.014 24.5 10.5 76 106-201 11-86 (268)
102 PF13490 zf-HC2: Putative zinc 24.7 98 0.0021 22.3 3.2 25 218-242 3-27 (36)
103 COG3462 Predicted membrane pro 24.7 59 0.0013 30.6 2.4 17 225-241 97-113 (117)
104 cd01575 PBP1_GntR Ligand-bindi 23.9 6.6E+02 0.014 24.2 9.8 83 93-199 2-84 (268)
105 cd07039 TPP_PYR_POX Pyrimidine 23.9 5.2E+02 0.011 24.8 8.9 126 113-241 3-139 (164)
106 TIGR00114 lumazine-synth 6,7-d 23.6 1.9E+02 0.0041 27.8 5.7 83 93-198 3-101 (138)
107 KOG2776 Metallopeptidase [Gene 23.5 53 0.0011 36.5 2.2 27 535-563 88-114 (398)
108 PF03737 Methyltransf_6: Demet 23.3 53 0.0011 31.6 1.9 100 455-563 29-150 (154)
109 cd08663 DAP_dppA_1 Peptidase M 23.3 37 0.00081 36.0 1.0 133 97-238 16-194 (266)
110 PF06833 MdcE: Malonate decarb 23.2 93 0.002 32.6 3.8 88 285-384 99-186 (234)
111 cd06293 PBP1_LacI_like_11 Liga 23.1 7.1E+02 0.015 24.3 10.4 85 93-201 2-86 (269)
112 PF10683 DBD_Tnp_Hermes: Herme 22.4 1.1E+02 0.0024 26.5 3.4 35 290-324 16-50 (68)
113 cd06281 PBP1_LacI_like_5 Ligan 22.4 7.4E+02 0.016 24.3 10.4 86 93-201 2-87 (269)
114 PRK03372 ppnK inorganic polyph 22.4 3.6E+02 0.0078 29.1 8.2 132 87-242 1-141 (306)
115 PF11213 DUF3006: Protein of u 22.3 87 0.0019 26.5 2.9 28 552-582 34-61 (71)
116 cd05828 Sortase_D_4 Sortase D 22.3 1E+02 0.0023 28.3 3.6 51 519-573 31-83 (127)
117 smart00852 MoCF_biosynth Proba 22.2 2.4E+02 0.0053 25.8 6.1 65 95-177 2-66 (135)
118 cd05829 Sortase_E Sortase E (S 22.2 1.8E+02 0.0038 27.6 5.2 55 518-572 36-94 (144)
119 PRK09701 D-allose transporter 22.2 6.3E+02 0.014 26.0 9.7 93 88-201 22-115 (311)
120 TIGR01481 ccpA catabolite cont 22.1 7.3E+02 0.016 25.3 10.1 102 75-200 37-145 (329)
121 cd06289 PBP1_MalI_like Ligand- 21.9 1.8E+02 0.004 28.1 5.5 74 108-200 13-86 (268)
122 PF04199 Cyclase: Putative cyc 21.4 1.1E+02 0.0024 29.1 3.7 38 453-491 72-123 (171)
123 cd06272 PBP1_hexuronate_repres 21.3 7.3E+02 0.016 24.1 9.6 80 93-200 2-81 (261)
124 cd06311 PBP1_ABC_sugar_binding 21.2 7.1E+02 0.015 24.5 9.5 89 93-203 2-95 (274)
125 PRK05849 hypothetical protein; 21.0 2.7E+02 0.0058 34.0 7.5 90 454-569 687-782 (783)
126 TIGR00177 molyb_syn molybdenum 21.0 3.5E+02 0.0076 25.4 6.9 69 91-177 1-75 (144)
127 PRK12419 riboflavin synthase s 20.9 4.5E+02 0.0097 26.1 7.8 93 86-198 6-111 (158)
128 cd01540 PBP1_arabinose_binding 20.6 6.7E+02 0.014 24.8 9.2 85 93-201 2-87 (289)
129 PLN00072 3-isopropylmalate iso 20.4 44 0.00095 35.2 0.8 48 549-601 189-240 (246)
No 1
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=100.00 E-value=9.2e-215 Score=1728.80 Aligned_cols=550 Identities=56% Similarity=0.955 Sum_probs=543.9
Q ss_pred CCCCcCCCCCCchhhHHHHHhCCCCcCcCCCCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCccc
Q 007192 60 KYSSRVTEPKSQGGSQAILHGVGLSEADMSKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAI 139 (613)
Q Consensus 60 ~~s~~~~~g~~~a~~ra~l~a~G~~ded~~kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgi 139 (613)
+||+.+++|.++++|||+||++||++|||+||+|||+|||||++|||+||++|+++||+||+++||+||||+||++||||
T Consensus 1 ~rs~~~~~g~~~a~~ra~~~a~G~~~edl~kP~IgI~ns~se~~Pch~hl~~la~~Vk~gi~~aGg~p~ef~ti~~~Dgi 80 (552)
T PRK00911 1 MRSDMITKGVERAPHRSMLRATGLTDEDFDKPFIGIANSWNEITPCNIHLNELADAVKEGVRAAGGVPFEFNTIGVSDGI 80 (552)
T ss_pred CCcccccCCcchHHHHHHHHHcCCChHHhcCCEEEEeccccccccchhhHHHHHHHHHHHHHHcCCEeEEeCCCcccccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccCceecccchHHHHHHHHHHHcccCCCcEEEccCCCCCchhhHHhhhccCCCeEEEccCCCCCcccCCcccceehH
Q 007192 140 SMGTKGMCFSLQSRDLIADSIETVMSAQWYDANISIPGCDKNMPGTIMAMGRLNRPGIMVYGGTIKPGHFQGHTYDIVSA 219 (613)
Q Consensus 140 a~g~~GM~ysL~sRelIAdsiE~~~~a~~~Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~gGpm~~G~~~g~~~~~~~~ 219 (613)
+|||+||+|||+|||+|||+||+|+++|+|||+|+|+|||||+|||||||+|+|||+||||||||+||+|+|+++++.++
T Consensus 81 ~~g~~GM~ysL~sReliA~~iE~~~~a~~~Dg~V~l~~CDK~~Pg~lMaaarlniPsi~v~gGpm~~G~~~g~~~~~~~~ 160 (552)
T PRK00911 81 AMGHEGMKYSLVSREVIADSIETVVNAHWFDGLVAIPGCDKNMPGMLMAAARLNVPSIFVYGGPILPGRLKGKDLTLVSV 160 (552)
T ss_pred ccCcccceehhhhHHHHHHHHHHHhhCCCcceEEEeccCCCCcHHHHHHHHhcCCCEEEEeCCCcCCCCCCCccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHh
Q 007192 220 FQVYGEYVSGSISDEQRMNVVLNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLR 299 (613)
Q Consensus 220 ~e~~g~~~~G~i~~eel~~~E~~acp~~GsC~~mgTANTM~~~~EaLGm~LPGsa~~pA~~~~r~~~a~~aG~~iv~lv~ 299 (613)
||++|+|++|+||+||+.++|+++|||+|+|+||||||||||++|||||+||||+++||++++|+++|+++|++||+|++
T Consensus 161 ~e~~g~~~~G~i~~ee~~~~e~~a~ps~GsC~~mgTANTM~~l~EaLGm~LPgsa~~pA~~~~r~~~a~~~G~~iv~lv~ 240 (552)
T PRK00911 161 FEAVGAYAAGKISEEELKEIERNACPGAGSCGGMFTANTMACLIEALGMSLPGSGTIPAVDAERDELAREAGEAVVELLE 240 (552)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHhcCCCCCcccccchHHHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccCHHHHHHHHHHHHhcCCCchhHHhHHHHHHHhCCCCChHHHHHhhCCCCceeeccCCChhhHHHHHhhCCH
Q 007192 300 MDLKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVPFLADLKPSGKYVMEDVHKIGGT 379 (613)
Q Consensus 300 ~~i~PrdIlT~~af~NAi~v~~A~GGSTNavLHL~AIA~eagi~ltl~dfd~is~~vP~l~~l~P~G~~~m~dl~~aGGv 379 (613)
+|+|||||||++||+|||+++||+|||||++|||+|||+|+||+|||||||+||++||+|+|++|+|+|+|+|||+|||+
T Consensus 241 ~~~~prdIlT~~a~~NAi~v~~A~GGSTNavlHL~AIA~eaGi~l~l~dfd~is~~vP~l~~~~P~G~~~~~dl~~AGGv 320 (552)
T PRK00911 241 KDIKPRDILTREAFENAIAVDMALGGSTNAVLHLLAIAHEAGVDLTLDDFNRISKRTPHLADLKPSGKYVMEDLHEAGGI 320 (552)
T ss_pred cCCChHHhcCHHHHHHHHHHhcccCccccHHHHHHHHHHhcCCCCCHHHHHHHhccCCceeeecCCChHHHHHHHHcCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCcccCcCHHHHhccCCCCCCCCCccCCCCCCCCCCCCEEEEeccCCCCCeEEccccCCCceEE
Q 007192 380 PAVIRYLLELGFLDGDCMTVTGKTLAENAKTFPHLSEGQDIIRPLSNPIKKTGHIQVLRGNLAPEGSVAKITGKEGLYFS 459 (613)
Q Consensus 380 paVlk~L~~~glL~~d~lTVtGkTl~e~l~~~~~~~~d~~VIrp~~~P~~~~Ggl~vL~GNLAP~GAVvK~sa~~~~~f~ 459 (613)
|+|||+|.+.||||+|++|||||||+|||++++. +|++||||+++||+++|||+||+|||||+|||+|+||++..+|+
T Consensus 321 pavlk~L~~~glL~~d~~TVtG~Tl~e~l~~~~~--~d~~VIr~~~~P~~~~ggl~vL~GNLaP~GaViK~sa~~~~~~~ 398 (552)
T PRK00911 321 PAVMKELLDAGLLHGDCLTVTGKTLAENLADAPD--PDQDVIRPLDNPISPTGGLAILKGNLAPEGAVVKIAGVKPEMFT 398 (552)
T ss_pred HHHHHHHHHCCCcCCCCCCcCCCCHHHHHhcCCC--CCCCeECCccccCCCCCCEEEEecCCCCCceEEEccccCCccee
Confidence 9999999999999999999999999999999864 48999999999999999999999999999999999999888899
Q ss_pred eeEEEecCHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCCcchHHHHHhCCCCCeeEEEcCCCCCCCCCCcceEEe
Q 007192 460 GPALVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSHGFVVGHV 539 (613)
Q Consensus 460 GpA~VFdseeda~~aI~~g~I~~~GdVvVIRyeGPkGgPGMpEml~~t~al~g~Gl~~~VALITDGRfSGas~G~~IGHV 539 (613)
|||+|||||||+++||++++|++ |||||||||||||||||||||.+|++|+++||+++|||||||||||+|+|+|||||
T Consensus 399 GpA~VF~see~a~~ai~~g~I~~-gdVvViRyeGPkGgPGMpEml~~t~al~g~Gl~~~valITDGRfSG~s~G~~igHv 477 (552)
T PRK00911 399 GPARVFDSEEEAMEAILAGKIKA-GDVVVIRYEGPKGGPGMREMLAPTSAIVGAGLGDDVALITDGRFSGGTRGLCVGHV 477 (552)
T ss_pred eeEEEECCHHHHHHHHhcCCCCC-CeEEEEeCCCCCCCCChHHHhhHHHHHHhCCCCCceEEecccccCccccCCEEEEE
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCeEEeecCCEEEEecCCCEEEEecCHHHHHHHHhcCCCCCCCCchHHHHHHHHhCCCccCCcccC
Q 007192 540 CPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLTDEEMEERRRKWTPPPNKVNRGVLYKYIKNVQSASNGCVTD 612 (613)
Q Consensus 540 sPEAa~GGpIAlV~dGD~I~IDi~~r~L~l~v~~eeL~~R~~~w~~~~~~~~~G~l~~Y~~~V~sA~~GA~~~ 612 (613)
|||||+|||||+|||||+|+||+++|+|+|+||||||++||++|++|++++.+|||++|+++|+||++||+++
T Consensus 478 sPEAa~GGpIalv~dGD~I~IDi~~r~l~l~v~~eel~~R~~~~~~~~~~~~~G~l~~Y~~~v~~A~~Gav~~ 550 (552)
T PRK00911 478 SPEAAVGGPIALVEDGDIITIDAPNRTLDVLVSDEELARRRAAWKPPEPKYKRGVLAKYAKLVSSASTGAVTD 550 (552)
T ss_pred ChhhcCCCcEEEEeCCCEEEEecCCCEEEEecCHHHHHHHHHhCCCCCCcCChHHHHHHHHhCcCHhcCCcCC
Confidence 9999999999999999999999999999999999999999999999988999999999999999999999986
No 2
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=100.00 E-value=4.1e-211 Score=1697.22 Aligned_cols=532 Identities=52% Similarity=0.891 Sum_probs=524.0
Q ss_pred hCCCCcCcCCCCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHH
Q 007192 80 GVGLSEADMSKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADS 159 (613)
Q Consensus 80 a~G~~ded~~kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAds 159 (613)
++||+||||+||+|||+|||||++|||+||++|+++||+||+++||+||||+||++||||+|||+||+|||+|||+||||
T Consensus 1 a~G~~~ed~~kP~IgI~ns~~e~~pch~hl~~l~~~vk~gv~~aGg~p~ef~ti~v~Dgi~~g~~GM~ySL~SRelIAds 80 (535)
T TIGR00110 1 ATGFTDEDFGKPFIGVANSYTTIVPGHMHLRDLAQAVKEGIEAAGGVAFEFNTIAVCDGIAMGHEGMKYSLPSREIIADS 80 (535)
T ss_pred CCCCChHHhCCCEEEEEeccccCcCchhhHHHHHHHHHHHHHHcCCeeEEecCCcCccccccCCcccchhhhhHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcccCCCcEEEccCCCCCchhhHHhhhccCCCeEEEccCCCCCcccC-CcccceehHHHHHHHHhcCCCCHHHHHH
Q 007192 160 IETVMSAQWYDANISIPGCDKNMPGTIMAMGRLNRPGIMVYGGTIKPGHFQ-GHTYDIVSAFQVYGEYVSGSISDEQRMN 238 (613)
Q Consensus 160 iE~~~~a~~~Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~gGpm~~G~~~-g~~~~~~~~~e~~g~~~~G~i~~eel~~ 238 (613)
||+++++|+|||+|+|+|||||+|||||||+|+|||+||||||||+||+++ |+++++.++||++|+|++|+||+|||++
T Consensus 81 iE~~~~~~~~Dg~v~l~~CDK~~PG~lMaaarlniP~i~v~gGpm~~G~~~~g~~~~~~~~~e~~g~~~~G~i~~eel~~ 160 (535)
T TIGR00110 81 VETMVNAHRFDGLVCIPSCDKITPGMLMAAARLNIPSIFVTGGPMLPGHTKLGKKIDLVSAFEAVGEYAAGKISEEELEE 160 (535)
T ss_pred HHHHHhcCCcceEEEeccCCCCcHHHHHHHHhcCCCEEEEeCCCccCCCCCCCCccchhhHHHHHHHHHcCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCccchHHHHHHHHHHhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHhCCCCcccccCHHHHHHHHH
Q 007192 239 VVLNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRMDLKPRDIITKKSLRNAMV 318 (613)
Q Consensus 239 ~E~~acp~~GsC~~mgTANTM~~~~EaLGm~LPGsa~~pA~~~~r~~~a~~aG~~iv~lv~~~i~PrdIlT~~af~NAi~ 318 (613)
+|+++|||+|+|+||||||||||++|+|||+||||+++||++++|+++|+++|++||+|+++|+|||||||++||+|||+
T Consensus 161 ~e~~a~ps~GsC~gmgTANTM~~l~EaLGl~LPGsa~ipA~~~~r~~~a~~ag~~iv~l~~~~i~p~dIlT~~a~~NAi~ 240 (535)
T TIGR00110 161 IERSACPGCGSCSGMFTANTMACLTEALGLSLPGCSTMLATSAEKKRIAKNSGKRIVELVKKNIKPRDILTKEAFENAIT 240 (535)
T ss_pred HHHhcCCCCCCcccEEHHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHcCCCHHHhCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCchhHHhHHHHHHHhCCCCChHHHHHhhCCCCceeeccCCChhhHHHHHhhCCHHHHHHHHHHCCCCCCCCCc
Q 007192 319 IVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVPFLADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMT 398 (613)
Q Consensus 319 v~~A~GGSTNavLHL~AIA~eagi~ltl~dfd~is~~vP~l~~l~P~G~~~m~dl~~aGGvpaVlk~L~~~glL~~d~lT 398 (613)
++||+|||||++|||+|||+|+||+|||||||+||++||+|++++|+|+|+|+|||+|||+|+|||+|+++|+||+|++|
T Consensus 241 v~~A~GGSTNavlHL~AiA~eaGi~l~lddfd~is~~vP~l~~l~P~G~~~~~d~~~aGGvpav~k~L~~~glL~~d~~T 320 (535)
T TIGR00110 241 VDMALGGSTNTVLHLLAIANEAGVDLSLDDFDRLSRKVPHIASLAPSGKYVMEDLHRAGGIPAVLKELDREGLLHGDTLT 320 (535)
T ss_pred HhcccCccccHHHHHHHHHHhcCCCCCHHHHHHHhccCCcceeecCCChhhHHHHHHcCCHHHHHHHHHHCCCcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcCHHHHhccCCCCCCCCCccCCCCCCCCCCCCEEEEeccCCCCCeEEccccCCC--ceEEeeEEEecCHHHHHHHHh
Q 007192 399 VTGKTLAENAKTFPHLSEGQDIIRPLSNPIKKTGHIQVLRGNLAPEGSVAKITGKEG--LYFSGPALVFEGEESMIAAIS 476 (613)
Q Consensus 399 VtGkTl~e~l~~~~~~~~d~~VIrp~~~P~~~~Ggl~vL~GNLAP~GAVvK~sa~~~--~~f~GpA~VFdseeda~~aI~ 476 (613)
||||||+|||++++..+.|++||||+++||+++|||+||||||||+|||+|+||++. .+|+|||+|||||||+++||+
T Consensus 321 VtG~tl~e~l~~~~~~~~d~~VIr~~~~P~~~~Ggl~iL~GNLaP~GaViK~sa~~~~~~~~~G~A~VF~see~a~~ai~ 400 (535)
T TIGR00110 321 VTGKTLGEILEQAPVIPEGQDVIRPLDNPVHQEGGLAILKGNLAPNGAVVKIAGVDEDMTKFEGPAKVFESEEEALEAIL 400 (535)
T ss_pred cCCcCHHHHHhcccccCCCCCeECCccccCCCCCCEEEEecCCCcCCeEEEecccCCcccEEEEeEEEECCHHHHHHHHh
Confidence 999999999998764334899999999999999999999999999999999999764 789999999999999999999
Q ss_pred CCCCCCCCeEEEEeCCCCCCCCCCCCCcchHHHHHhCCCCCeeEEEcCCCCCCCCCCcceEEecccccCCCCeEEeecCC
Q 007192 477 EDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSHGFVVGHVCPEAQDGGPIGLIQNGD 556 (613)
Q Consensus 477 ~g~I~~~GdVvVIRyeGPkGgPGMpEml~~t~al~g~Gl~~~VALITDGRfSGas~G~~IGHVsPEAa~GGpIAlV~dGD 556 (613)
+++|++ |||||||||||||||||||||.+|++|.++||+++|||||||||||+|+|+|||||||||++|||||+|||||
T Consensus 401 ~g~i~~-gdVvViRyeGPkGgPGMpEml~~t~al~g~glg~~VaLITDGRfSGas~G~~igHVsPEAa~GGpIalv~dGD 479 (535)
T TIGR00110 401 GGKIKE-GDVVVIRYEGPKGGPGMPEMLAPTSAIKGMGLGKSVALITDGRFSGGTRGLCIGHVSPEAAEGGPIALVEDGD 479 (535)
T ss_pred cCCCCC-CeEEEEeCCCCCCCCChhhhcchHHHHHhCCCCCceEEeccCccCCcCCCCEEEEEChhhhcCCcEEEEeCCC
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCEEEEecCHHHHHHHHhcCCCCCCCCchHHHHHHHHhCCCccCCcccC
Q 007192 557 IINIDVQKRRIDVQLTDEEMEERRRKWTPPPNKVNRGVLYKYIKNVQSASNGCVTD 612 (613)
Q Consensus 557 ~I~IDi~~r~L~l~v~~eeL~~R~~~w~~~~~~~~~G~l~~Y~~~V~sA~~GA~~~ 612 (613)
+|+||+++|+|+|+||||||++||++|+||++++++|||++|+++|+||++||+++
T Consensus 480 ~I~ID~~~r~l~l~v~~~el~~R~~~~~~~~~~~~~G~l~~y~~~v~~A~~Gav~~ 535 (535)
T TIGR00110 480 IIIIDIPNRKLDLQVSDEELAERRASWKAPEPRYVKGYLAKYAKLVSSADEGAVLD 535 (535)
T ss_pred EEEEECCCCEEEEecCHHHHHHHHhhcCCCCCCCChHHHHHHHHhCcCHhhCCcCC
Confidence 99999999999999999999999999999988999999999999999999999985
No 3
>PRK12448 dihydroxy-acid dehydratase; Provisional
Probab=100.00 E-value=6.8e-210 Score=1700.43 Aligned_cols=553 Identities=39% Similarity=0.645 Sum_probs=533.1
Q ss_pred CCCCCcCCCCCCchhhHHHHHhCCCCcCcCCCCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcc
Q 007192 59 NKYSSRVTEPKSQGGSQAILHGVGLSEADMSKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDA 138 (613)
Q Consensus 59 ~~~s~~~~~g~~~a~~ra~l~a~G~~ded~~kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dg 138 (613)
++||+.+++|.+|++|||+||++||+||||+||+|||+|||||++|||+||++|++.||+||+++||+||||+||++|||
T Consensus 2 ~~rs~~~~~g~~~a~~ra~l~a~G~~ded~~kP~IgI~ns~~e~~pch~hl~~la~~vk~gi~~aGG~p~ef~ti~v~Dg 81 (615)
T PRK12448 2 KYRSRTTTHGRNMAGARALWRATGMKDEDFGKPIIAVVNSFTQFVPGHVHLKDLGQLVAREIEAAGGVAKEFNTIAVDDG 81 (615)
T ss_pred CCccccccCCcccHHHHHHHHHcCCChHHhCCCEEEEEeccccCcCchhhHHHHHHHHHHHHHHcCCeeeEeccCcccCC
Confidence 36699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccCceecccchHHHHHHHHHHHcccCCCcEEEccCCCCCchhhHHhhhccCCCeEEEccCCCCCcccCCcccc-ee
Q 007192 139 ISMGTKGMCFSLQSRDLIADSIETVMSAQWYDANISIPGCDKNMPGTIMAMGRLNRPGIMVYGGTIKPGHFQGHTYD-IV 217 (613)
Q Consensus 139 ia~g~~GM~ysL~sRelIAdsiE~~~~a~~~Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~gGpm~~G~~~g~~~~-~~ 217 (613)
|+|||+||+|||+|||+|||+||+|+++|+|||+|+|+|||||+|||||||+|+|+|+||||||||+||.++++..+ -.
T Consensus 82 it~g~~GM~ySL~SRelIAdsiE~~~~a~~~Dg~V~i~~CDK~~PG~lMaaarlniPsi~v~gGpm~~G~~~~~~~g~~~ 161 (615)
T PRK12448 82 IAMGHGGMLYSLPSRELIADSVEYMVNAHCADAMVCISNCDKITPGMLMAALRLNIPVVFVSGGPMEAGKTKLSDKIIKL 161 (615)
T ss_pred cCcCCccceechhhHHHHHHHHHHHhhCCCcceEEEeccCCCchHHHHHHHHhcCCCEEEEeCCCcCCCccccCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987433211 12
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHH
Q 007192 218 SAFQVYGEYVSGSISDEQRMNVVLNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLEL 297 (613)
Q Consensus 218 ~~~e~~g~~~~G~i~~eel~~~E~~acp~~GsC~~mgTANTM~~~~EaLGm~LPGsa~~pA~~~~r~~~a~~aG~~iv~l 297 (613)
++|+++++|++|+||+|||.++|+++|||+|+|+||||||||||++|||||+||||+++||++++|+++|+++|++||+|
T Consensus 162 ~~~~~~~~~~~G~i~~eel~~~E~~a~p~~GsC~gmgTANTM~~l~EaLGl~LPGsa~ipA~~~~r~~~a~~ag~~iv~l 241 (615)
T PRK12448 162 DLVDAMVAAADPSVSDEDVAQIERSACPTCGSCSGMFTANSMNCLTEALGLSLPGNGSLLATHADRKQLFLEAGRRIVEL 241 (615)
T ss_pred chHHHHHHHHcCCCCHHHHHHHHHhcCCCCCccccCCHHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhC-------CCCcccccCHHHHHHHHHHHHhcCCCchhHHhHHHHHHHhCCCCChHHHHHhhCCCCceeeccCC-Chhh
Q 007192 298 LRM-------DLKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVPFLADLKPS-GKYV 369 (613)
Q Consensus 298 v~~-------~i~PrdIlT~~af~NAi~v~~A~GGSTNavLHL~AIA~eagi~ltl~dfd~is~~vP~l~~l~P~-G~~~ 369 (613)
+++ +++||||||++||+|||+++||+|||||++|||+|||+|+||+|||+|||+||++||+|||++|+ |+|+
T Consensus 242 v~~~~~~~~~~i~prdIlT~~a~~NAi~v~~A~GGSTNavlHL~AIA~eaGi~l~l~dfd~is~~vP~L~~~~P~~G~~~ 321 (615)
T PRK12448 242 AKRYYEQDDESVLPRSIATKAAFENAMTLDIAMGGSTNTVLHLLAAAQEAEVDFTMADIDRLSRKVPCLCKVAPNTQKYH 321 (615)
T ss_pred HHHhhccccCCCCHHHcCCHHHHHHHHHHccccCccccHHHHHHHHHHhcCCCCCHHHHHHHhccCCeeEEecCCCCccc
Confidence 994 99999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHhhCCHHHHHHHHHHCCCCCCCCCcccCcCHHHHhccCCCC-----------------------------------
Q 007192 370 MEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFPHL----------------------------------- 414 (613)
Q Consensus 370 m~dl~~aGGvpaVlk~L~~~glL~~d~lTVtGkTl~e~l~~~~~~----------------------------------- 414 (613)
|+|||+|||+|+|||+|+++||||+||+|||||||+|||++++..
T Consensus 322 ~~d~~~AGGvpavmkeL~~~glL~~D~~TVtG~Tl~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (615)
T PRK12448 322 MEDVHRAGGIMGILGELDRAGLLHTDVPTVHGLTLGEALDQWDIMRTQDEAVKEFFRAAPGGIRTTVAFSQDCRWDSLDT 401 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHCCCCCCCCCCcCCcCHHHHHhccccccCCchhhhhhhhhcCCCcccccccccccccccccc
Confidence 999999999999999999999999999999999999999987510
Q ss_pred CCCCCccCCCCCCCCCCCCEEEEeccCCCCCeEEccccCCC--ceEEeeEEEecCHHHHHHHHhCCCCCCCCeEEEEeCC
Q 007192 415 SEGQDIIRPLSNPIKKTGHIQVLRGNLAPEGSVAKITGKEG--LYFSGPALVFEGEESMIAAISEDPMSFKGKVVVIRGE 492 (613)
Q Consensus 415 ~~d~~VIrp~~~P~~~~Ggl~vL~GNLAP~GAVvK~sa~~~--~~f~GpA~VFdseeda~~aI~~g~I~~~GdVvVIRye 492 (613)
.+|++||||+++||+++|||+||+|||||+|||+|+||++. ++|+|||+||||||||++||++++|++ |||||||||
T Consensus 402 ~~~~~VIr~~~~P~~~~Ggl~vL~GNLAP~GAViK~sav~~~~~~~~GpA~VFdsee~a~~ai~~g~I~~-gdVvVIRye 480 (615)
T PRK12448 402 DRENGCIRSVEHAYSKDGGLAVLYGNIAEDGCIVKTAGVDESILKFTGPARVFESQDDAVEAILGGKVKA-GDVVVIRYE 480 (615)
T ss_pred cccCCEECCcccccCCCCCEEEeecCCCCCCeEEEecccCCcceEEEEeEEEECCHHHHHHHHhcCCCCC-CeEEEEeCC
Confidence 13568999999999999999999999999999999999754 789999999999999999999999999 999999999
Q ss_pred CCCCCCCCCCCcchHHHHHhCCCCCeeEEEcCCCCCCCCCCcceEEecccccCCCCeEEeecCCEEEEecCCCEEEEecC
Q 007192 493 GPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSHGFVVGHVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLT 572 (613)
Q Consensus 493 GPkGgPGMpEml~~t~al~g~Gl~~~VALITDGRfSGas~G~~IGHVsPEAa~GGpIAlV~dGD~I~IDi~~r~L~l~v~ 572 (613)
||||||||||||.+|++|+++|||++|||||||||||+|+|+|||||||||++|||||+|||||+|+||+++|+|+|+||
T Consensus 481 GPkGgPGMpEml~~t~aL~g~Glg~~VaLITDGRfSGas~G~~igHVsPEAa~GGpIalV~dGD~I~IDi~~r~L~l~vs 560 (615)
T PRK12448 481 GPKGGPGMQEMLYPTSYLKSKGLGKACALITDGRFSGGTSGLSIGHVSPEAASGGAIGLVEDGDIIEIDIPNRSINLLVS 560 (615)
T ss_pred CCCCCcCHHHHHHHHHHHHhCCCCCceEEecccCcCCcccCCEEEEEChhhccCCcEEEEeCCCEEEEECCCCEEEEeeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc--------CCCC-CCCCchHHHHHHHHhCCCccCCcccC
Q 007192 573 DEEMEERRRK--------WTPP-PNKVNRGVLYKYIKNVQSASNGCVTD 612 (613)
Q Consensus 573 ~eeL~~R~~~--------w~~~-~~~~~~G~l~~Y~~~V~sA~~GA~~~ 612 (613)
||||++||++ |+|| ++++.+|||++|+++|+||++||+++
T Consensus 561 ~eel~~R~~~~~~~~~~~w~~~~~~~~~~g~l~~Y~~~v~~A~~Ga~~~ 609 (615)
T PRK12448 561 DEELAARRAAQEARGDKAWKPKNRERKVSFALKAYAALATSADKGAVRD 609 (615)
T ss_pred HHHHHHHHHhhhccccccCCCCCCCCCcCHHHHHHHHhcccHhcCcccc
Confidence 9999999999 9998 36677899999999999999999986
No 4
>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.9e-209 Score=1680.74 Aligned_cols=555 Identities=48% Similarity=0.809 Sum_probs=544.0
Q ss_pred CcCCCCCcCCCCCCc-hhhHHHHHhCCCCcCcCCCCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEecccc
Q 007192 57 KLNKYSSRVTEPKSQ-GGSQAILHGVGLSEADMSKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGV 135 (613)
Q Consensus 57 ~~~~~s~~~~~g~~~-a~~ra~l~a~G~~ded~~kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav 135 (613)
.++.||+.++++.++ +++|++|+++|+++|||+||+|||+|||||++|||+||++|++.||++|++|||+||||+||+|
T Consensus 8 ~~~~RS~~~~~~~~~~~~~r~l~~a~G~~~~~~~kP~IgI~~s~~d~~p~h~hl~~l~~~vk~~i~~aGg~p~ef~t~~v 87 (575)
T COG0129 8 RIKLRSRTTTDGPLRAAGHRSLLRATGLTDEDFGKPIIGIANSYNDMVPGHQHLKDLAQLVKEGIREAGGVPVEFGTIAV 87 (575)
T ss_pred cccccchhhhcCcccccchHHHHHHhCCChHHcCCCeEEEEeccccCcCchhhHHHHHHHHHHHHHHcCCceeEeCCCCc
Confidence 458899999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCccCceecccchHHHHHHHHHHHcccCCCcEEEccCCCCCchhhHHhhhccCCCeEEEccCCCCCcccCCcccc
Q 007192 136 SDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDANISIPGCDKNMPGTIMAMGRLNRPGIMVYGGTIKPGHFQGHTYD 215 (613)
Q Consensus 136 ~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~gGpm~~G~~~g~~~~ 215 (613)
||||+|||.||+|||+|||+|||++|+++++|+|||+|+|++||||+|||||||+|+|||+||||||||++|++++++..
T Consensus 88 ~DGiamG~~GM~~SL~SRelIAds~e~~~~~~~~Da~V~i~~CDKi~PG~lmaa~r~niPaIfv~gGpM~~G~~~~~~~~ 167 (575)
T COG0129 88 CDGIAMGHDGMPYSLPSRELIADSVEEVLSAHPFDGVVLIGGCDKITPGMLMAAARLNIPAIFVSGGPMLAGKVNGEKAG 167 (575)
T ss_pred cCccccCCCCcccccccHHHHHHHHHHHHhccCcceEEEecCCCCccHHHHHHHHhcCCCEEEecCCcCCCCccCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999989888
Q ss_pred eehHHHHHHHHhcCCCCHHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHhcCCCCCCCCCCCCChhHHHHHHHHHHHHH
Q 007192 216 IVSAFQVYGEYVSGSISDEQRMNVVLNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLL 295 (613)
Q Consensus 216 ~~~~~e~~g~~~~G~i~~eel~~~E~~acp~~GsC~~mgTANTM~~~~EaLGm~LPGsa~~pA~~~~r~~~a~~aG~~iv 295 (613)
+.++||++++|.+|+||+|||+++|+++||+||+|+||||||||||++|||||+||||+++||++++|+++++++|++||
T Consensus 168 ~~~~~~~~~~~~aG~is~ee~~~~E~~acps~GsC~~mgTAnTm~~l~EaLGlsLPgsa~~pa~~~~r~~l~~~ag~~iv 247 (575)
T COG0129 168 GTSVFEAVGAYAAGKISREELLEIERSACPSPGSCSGMGTANTMNCLAEALGLSLPGSASIPATSAERKALAREAGRRIV 247 (575)
T ss_pred chhHHHHHHHHHcCCCCHHHHHHHHHhcCCCCCcccccccHhHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCcccccCHHHHHHHHHHHHhcCCCchhHHhHHHHHHHhCCCCChHHHHHhhCCCCceeeccCCC-hhhHHHHH
Q 007192 296 ELLRMDLKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVPFLADLKPSG-KYVMEDVH 374 (613)
Q Consensus 296 ~lv~~~i~PrdIlT~~af~NAi~v~~A~GGSTNavLHL~AIA~eagi~ltl~dfd~is~~vP~l~~l~P~G-~~~m~dl~ 374 (613)
+|++++++||||+|++||||||+++||+|||||++|||+||||||||+|||||||+||++||+||+++||| +|+|+|||
T Consensus 248 el~~~~i~p~~IlT~~AfeNAi~v~~A~GGSTN~vLHLlAiA~~aGv~ltldD~d~is~~vP~L~~v~Png~~y~~~d~~ 327 (575)
T COG0129 248 ELVEEDIKPRDILTKKAFENAIVVDMATGGSTNAVLHLLAIAREAGVDLTLDDFDRISRKVPLLAKVYPNGGKYDMEDFH 327 (575)
T ss_pred HHHhcCCCHHHccCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcCCCCCHHHHHHHhccCCeEEEecCCCCcccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999976 99999999
Q ss_pred hhCCHHHHHHHHHHCCCCCCCCCcccCcCHHHHhccCCCCC-CCCCccCCCCCCCCCCCCEEEEeccCCCCCeEEccccC
Q 007192 375 KIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFPHLS-EGQDIIRPLSNPIKKTGHIQVLRGNLAPEGSVAKITGK 453 (613)
Q Consensus 375 ~aGGvpaVlk~L~~~glL~~d~lTVtGkTl~e~l~~~~~~~-~d~~VIrp~~~P~~~~Ggl~vL~GNLAP~GAVvK~sa~ 453 (613)
+|||+|+|||+|+++||||+|++||||+|++|||++|+..+ ++++||||+++||+++|||+||+|||||+|||+|+||+
T Consensus 328 ~AGGvp~v~~~L~~~GLLh~D~~TV~G~Tl~e~l~~~~~~~~~~~~vir~~~~p~~~~GGl~vL~GNLap~gaViK~sav 407 (575)
T COG0129 328 RAGGVPAVMKELLKAGLLHGDVLTVTGKTLGENLEGAEIRDTPDRDVIRPLDNPFSADGGLAVLKGNLAPDGAVIKTSAV 407 (575)
T ss_pred HccCHHHHHHHHHHcCCcCCCcceeeCcCHHHHHhhccccCCcchhhcccCCCCcCCCCCeEEeecccCCCCceEEeecc
Confidence 99999999999999999999999999999999999987642 36899999999999999999999999999999999997
Q ss_pred C--CceEEeeEEEecCHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCCcchHHHHHhCCCCCeeEEEcCCCCCCCC
Q 007192 454 E--GLYFSGPALVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGS 531 (613)
Q Consensus 454 ~--~~~f~GpA~VFdseeda~~aI~~g~I~~~GdVvVIRyeGPkGgPGMpEml~~t~al~g~Gl~~~VALITDGRfSGas 531 (613)
+ ..+|+|||+|||||||+++||++|+|++ |||||||||||||||||||||.+|++|.++|||++|||||||||||+|
T Consensus 408 ~~~~~~~eGpA~VFds~e~~~~ai~~g~l~~-g~VvVIRyeGPkGgpGMpEml~~t~~L~~~glg~~vaLITDGRfSG~s 486 (575)
T COG0129 408 DPEIRVFEGPARVFDSQEDAIKAILDGELKA-GDVVVIRYEGPKGGPGMPEMLKPTSALKGKGLGKKVALITDGRFSGAS 486 (575)
T ss_pred CchhceEEeeeEEECCHHHHHHHHhcCCCCC-CeEEEEeccCCCCCCCchhhhhhhHHHHhCCCCCceeEecccccCCCC
Confidence 6 6679999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEecccccCCCCeEEeecCCEEEEecCCCEEEEecCHHHHHHHHhcCCCCC----CCCchHHHHHHHHhCCCccC
Q 007192 532 HGFVVGHVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLTDEEMEERRRKWTPPP----NKVNRGVLYKYIKNVQSASN 607 (613)
Q Consensus 532 ~G~~IGHVsPEAa~GGpIAlV~dGD~I~IDi~~r~L~l~v~~eeL~~R~~~w~~~~----~~~~~G~l~~Y~~~V~sA~~ 607 (613)
+|+|||||||||++|||||+|||||+|+||+++|+|+++||||||++||++|+++. +++.+|||++|+++|+||++
T Consensus 487 ~g~~igHvsPEAa~GGpIalvrdGD~I~ID~~~~~l~l~vseeEla~R~~~~~~~~~~~~~~~~~~~l~~y~~~v~sA~~ 566 (575)
T COG0129 487 RGPSIGHVSPEAAEGGPIALVRDGDIIRIDIPNRTLDLLVSEEELAARRAEWPAPGDPAWPRYGRGLLAAYRKLVSSADK 566 (575)
T ss_pred CCCeeeeeChhhhcCCcEEEEecCCEEEEECCCCeeeeecCHHHHHHHHhhccCccccCCcccchHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999998776 78999999999999999999
Q ss_pred CcccC
Q 007192 608 GCVTD 612 (613)
Q Consensus 608 GA~~~ 612 (613)
||+++
T Consensus 567 Gav~~ 571 (575)
T COG0129 567 GAVLD 571 (575)
T ss_pred Cceec
Confidence 99986
No 5
>PRK06131 dihydroxy-acid dehydratase; Validated
Probab=100.00 E-value=2e-206 Score=1668.42 Aligned_cols=541 Identities=39% Similarity=0.655 Sum_probs=531.2
Q ss_pred CCCcCCCCCCch--hhHHHHHhCCCCcCcCC-CCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCc
Q 007192 61 YSSRVTEPKSQG--GSQAILHGVGLSEADMS-KPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSD 137 (613)
Q Consensus 61 ~s~~~~~g~~~a--~~ra~l~a~G~~ded~~-kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~D 137 (613)
||..+++|.+++ +||||||++||+||||+ ||+|||+|||||++|||+||++|+++||+||+++||+||||+||++||
T Consensus 6 ~s~~~~~g~~~a~~~~ra~l~a~G~~~ed~~~kP~IgI~ns~se~~Pch~hl~~l~~~vk~gi~~aGg~p~ef~ti~v~D 85 (571)
T PRK06131 6 RSLAWFGDDDFRAFYHRSFMKNQGYPDELFDGRPIIGICNTWSDLNPCNAHFRQLAERVKRGVLEAGGFPVEFPVISLGE 85 (571)
T ss_pred ccccccCCCccccHHHHHHHHHcCCChHHhccCCEEEEecccccCcCchhhHHHHHHHHHHHHHHcCCEEEecCccCccc
Confidence 488999999998 99999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred ccccCccCceecccchHHHHHHHHHHHcccCCCcEEEccCCCCCchhhHHhhhccCCCeEEEccCCCCCcccCCccc-ce
Q 007192 138 AISMGTKGMCFSLQSRDLIADSIETVMSAQWYDANISIPGCDKNMPGTIMAMGRLNRPGIMVYGGTIKPGHFQGHTY-DI 216 (613)
Q Consensus 138 gia~g~~GM~ysL~sRelIAdsiE~~~~a~~~Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~gGpm~~G~~~g~~~-~~ 216 (613)
||+||| ||+|||+||||||+|+++|+|||+|+|+|||||+|||||||+|+|+|+||||||||+||.++|+++ ++
T Consensus 86 gi~~g~-----sL~sRelIAdsiE~~~~a~~~Dg~v~i~~CDK~~PG~lMaa~rlniPsi~v~gGpm~~G~~~g~~~~~~ 160 (571)
T PRK06131 86 SFLRPT-----AMLYRNLAAMDVEEMIRGYPIDGVVLLGGCDKTTPALLMGAASVDLPAIVLSGGPMLNGKHKGERLGSG 160 (571)
T ss_pred cccCcc-----ccccHHHHHHHHHHHHhcCCcceEEEEeeCCCCcHHHHHHHHhcCCCEEEEeCCCcCCCCCCCcCcccc
Confidence 999996 999999999999999999999999999999999999999999999999999999999999999999 69
Q ss_pred ehHHHHHHHHhcCCCCHHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHhcCCCCCCCCCCCCChhHHHHHHHHHHHHHH
Q 007192 217 VSAFQVYGEYVSGSISDEQRMNVVLNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLE 296 (613)
Q Consensus 217 ~~~~e~~g~~~~G~i~~eel~~~E~~acp~~GsC~~mgTANTM~~~~EaLGm~LPGsa~~pA~~~~r~~~a~~aG~~iv~ 296 (613)
.++||++|+|++|+||+|||+++|+++|||+|+|+||||||||||++|||||+||||+++||++++|+++|+++|++||+
T Consensus 161 ~~~~e~~g~~~~G~i~~eel~~~e~~a~p~~GsC~gmgTANTM~~~~EaLGl~LPgsa~~pA~~~~r~~~a~~ag~~iv~ 240 (571)
T PRK06131 161 TDVWKYWEELRAGEIDLEEFLEAEAGMARSAGTCNTMGTASTMACMAEALGMSLPGNAAIPAVDARRIRMAELTGRRIVE 240 (571)
T ss_pred hhHHHHHHHHHcCCCCHHHHHHHHHhcCCCCCccccchhHHHHHHHHHHHhcCCCcCcCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCcccccCHHHHHHHHHHHHhcCCCchhHHhHHHHHHHhCCCCChHHHHHhhCCCCceeeccCCChhhHHHHHhh
Q 007192 297 LLRMDLKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVPFLADLKPSGKYVMEDVHKI 376 (613)
Q Consensus 297 lv~~~i~PrdIlT~~af~NAi~v~~A~GGSTNavLHL~AIA~eagi~ltl~dfd~is~~vP~l~~l~P~G~~~m~dl~~a 376 (613)
|++++++||||||++||+|||+++||+|||||++|||+|||+|+||+|||||||+||++||+|+|++|+|+|+|+|||+|
T Consensus 241 lv~~~i~prdIlT~~a~~NAi~v~~A~GGSTNavlHL~AIA~eagi~l~l~dfd~is~~vP~l~~l~P~G~~~~~d~~~a 320 (571)
T PRK06131 241 MVHEDLKPSDILTREAFENAIRVNAAIGGSTNAVIHLIAIAGRAGVELDLDDWDRIGRDVPVLVNLQPSGEYLMEDFYYA 320 (571)
T ss_pred HHhcCCCHHHhcCHHHHHHHHHHhcccCccccHHHHHHHHHHhcCCCCCHHHHHHHhccCCeeEEecCCCcccHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHCCCCCCCCCcccCcCHHHHhccCCCCCCCCCccCCCCCCCCCCCCEEEEeccCCCCCeEEccccCCC-
Q 007192 377 GGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFPHLSEGQDIIRPLSNPIKKTGHIQVLRGNLAPEGSVAKITGKEG- 455 (613)
Q Consensus 377 GGvpaVlk~L~~~glL~~d~lTVtGkTl~e~l~~~~~~~~d~~VIrp~~~P~~~~Ggl~vL~GNLAP~GAVvK~sa~~~- 455 (613)
||+|+|||+|.+ |||+||+|||||||+|||++++. .|++||||+++||+++|||+||+|||||+|||+|+||++.
T Consensus 321 GGvp~vlk~L~~--lL~~d~~TVtG~tl~e~l~~~~~--~d~~VI~~~~~P~~~~Ggl~vL~GNLaP~GaViK~sav~~~ 396 (571)
T PRK06131 321 GGLPAVLRELGE--LLHLDALTVNGKTLGENLAGAPV--YNDDVIRPLDNPLKPEGGIAVLRGNLAPDGAVIKPSAASPE 396 (571)
T ss_pred cCHHHHHHHHHH--HhcCCCCCcCCCCHHHHHhCCCC--CCCCeeCChhccCCCCCCeEEeecCCCCCCceeeecccCcc
Confidence 999999999998 99999999999999999998853 5899999999999999999999999999999999999754
Q ss_pred -ceEEeeEEEecCHHHHHHHHhCCCCC--CCCeEEEEeCCCCCCCCCCCC--CcchHHHHHhCCCCCeeEEEcCCCCCCC
Q 007192 456 -LYFSGPALVFEGEESMIAAISEDPMS--FKGKVVVIRGEGPKGGPGMPE--MLTPTSAIMGAGLGKEVALLTDGRFSGG 530 (613)
Q Consensus 456 -~~f~GpA~VFdseeda~~aI~~g~I~--~~GdVvVIRyeGPkGgPGMpE--ml~~t~al~g~Gl~~~VALITDGRfSGa 530 (613)
.+|+|||||||||||+++||++|+|+ + ||||||||||||||||||| ||.+|++|+++|| ++|||||||||||+
T Consensus 397 ~~~~~G~A~VF~see~a~~ai~~g~i~i~~-gdVvVIRyeGPkGgPGMpE~~mL~~t~al~g~Gl-~~vaLITDGRfSGa 474 (571)
T PRK06131 397 LLKHEGRAVVFEGYEDYKARIDDPDLDVDE-DTVLVLRNAGPKGYPGMPEVGNMPIPKKLLRQGV-KDMVRISDARMSGT 474 (571)
T ss_pred ccEEEeeeEEECCHHHHHHHHhCCCcCCCC-CeEEEEeCCCCCCCCCCccccccccHHHHHhCCC-ceeEEeccCCcCcc
Confidence 78999999999999999999999965 9 9999999999999999999 9999999999999 99999999999999
Q ss_pred CCCcceEEecccccCCCCeEEeecCCEEEEecCCCEEEEecCHHHHHHHHhcCCCCCCCCchHHHHHHHHhCCCccCCcc
Q 007192 531 SHGFVVGHVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLTDEEMEERRRKWTPPPNKVNRGVLYKYIKNVQSASNGCV 610 (613)
Q Consensus 531 s~G~~IGHVsPEAa~GGpIAlV~dGD~I~IDi~~r~L~l~v~~eeL~~R~~~w~~~~~~~~~G~l~~Y~~~V~sA~~GA~ 610 (613)
|+|+|||||||||++|||||+|||||+|+||+++|+|+|+||||||++|+++|++|++++.+|||++|+++|+||++||+
T Consensus 475 s~G~~igHVsPEAa~GGpIalV~dGD~I~IDi~~r~l~l~vs~~el~~R~~~~~~~~~~~~~G~l~~Y~~~v~sA~~Ga~ 554 (571)
T PRK06131 475 AYGTVVLHVAPEAAAGGPLALVRTGDRIRLDVPARRLDLLVSDEELARRRAAWPPPPPRAERGYQELYRDHVLQADEGCD 554 (571)
T ss_pred cCCCeEEEEChhhccCCcEEEEeCCCEEEEecCCCEEEEecCHHHHHHHHHhcCCCCCcCCcHHHHHHHHhCcCHhhCCc
Confidence 99999999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred cC
Q 007192 611 TD 612 (613)
Q Consensus 611 ~~ 612 (613)
++
T Consensus 555 ~~ 556 (571)
T PRK06131 555 FD 556 (571)
T ss_pred cc
Confidence 86
No 6
>PRK13016 dihydroxy-acid dehydratase; Provisional
Probab=100.00 E-value=2.5e-206 Score=1667.29 Aligned_cols=541 Identities=37% Similarity=0.641 Sum_probs=526.5
Q ss_pred CCCcCCCCCCch--hhHHHHHhCCCCcCcC-CCCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCc
Q 007192 61 YSSRVTEPKSQG--GSQAILHGVGLSEADM-SKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSD 137 (613)
Q Consensus 61 ~s~~~~~g~~~a--~~ra~l~a~G~~ded~-~kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~D 137 (613)
||+.+++|.+++ +||||||++||+|||| +||+|||+|||||++|||+||++|+++||+||++|||+||||+||++||
T Consensus 10 rS~~~~~g~~~~~~~~ra~l~a~G~~~~d~~~KP~IgI~ns~se~~Pch~hL~~la~~Vk~gv~~aGG~P~ef~ti~v~D 89 (577)
T PRK13016 10 RSARWFGPDDLRSFGHRSRMMQMGYAPEDFDGKPVIAILNTWSDANPCHGHFRERVEDVKRGVLQAGGFPLELPALSLSE 89 (577)
T ss_pred ccccccCCccccchHHHHHHHHcCCCHHHHhcCCEEEEEecccCCcCchhhHHHHHHHHHHHHHHcCCeeEecccccCcc
Confidence 389999999998 9999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred ccccCccCceecccchHHHHHHHHHHHcccCCCcEEEccCCCCCchhhHHhhhccCCCeEEEccCCCCCcccCCccc-ce
Q 007192 138 AISMGTKGMCFSLQSRDLIADSIETVMSAQWYDANISIPGCDKNMPGTIMAMGRLNRPGIMVYGGTIKPGHFQGHTY-DI 216 (613)
Q Consensus 138 gia~g~~GM~ysL~sRelIAdsiE~~~~a~~~Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~gGpm~~G~~~g~~~-~~ 216 (613)
||+||| ||+|||+|||+||+|+++|+|||+|+|+|||||+|||||||+|+|||+||||||||+||.++|+++ ++
T Consensus 90 gi~~g~-----sl~~RelIAdsiE~~~~a~~~Dg~V~l~~CDK~~Pg~lMaaarlniPsI~v~GG~m~~G~~~g~~~~~~ 164 (577)
T PRK13016 90 NFVKPT-----TMLYRNLLAMETEELIRSHPVDGAVLMGGCDKTTPGLVMGAISMGLPMIYLPAGPMLRGNYRGKVLGSG 164 (577)
T ss_pred cccCCc-----ccccHHHHHHHHHHHHhcCCccceEEeccCCCCcHHHHHHHHhcCCCEEEEecCCCCCCccCCceechh
Confidence 999997 888899999999999999999999999999999999999999999999999999999999999999 58
Q ss_pred ehHHHHHHHHhcCCCCHHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHhcCCCCCCCCCCCCChhHHHHHHHHHHHHHH
Q 007192 217 VSAFQVYGEYVSGSISDEQRMNVVLNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLE 296 (613)
Q Consensus 217 ~~~~e~~g~~~~G~i~~eel~~~E~~acp~~GsC~~mgTANTM~~~~EaLGm~LPGsa~~pA~~~~r~~~a~~aG~~iv~ 296 (613)
.++||++|+|++|+||+|||.++|+++|||+|+|+||||||||||++|||||+||||+++||++++|+++|+++|++||+
T Consensus 165 ~~~~e~~g~~~~G~i~~eel~~~e~~a~p~~GsC~gmgTANTM~~~~EaLGm~LPGsa~~pA~~~~r~~~a~~ag~~iv~ 244 (577)
T PRK13016 165 SDAWKYWDERRAGNITQAEWLEIEGGIARSYGTCMTMGTASTMTAIAEALGLTLPGASSIPAADANHQRMAALCGRRIVE 244 (577)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHhccCCCCCcccccCHHHHHHHHHHHHhcCCCcCcCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCcccccCHHHHHHHHHHHHhcCCCchhHHhHHHHHHHhCCCCChHHHHHhhCCCCceeeccCCCh-hhHHHHHh
Q 007192 297 LLRMDLKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVPFLADLKPSGK-YVMEDVHK 375 (613)
Q Consensus 297 lv~~~i~PrdIlT~~af~NAi~v~~A~GGSTNavLHL~AIA~eagi~ltl~dfd~is~~vP~l~~l~P~G~-~~m~dl~~ 375 (613)
|+++|+|||||||++||+|||+++||+|||||++|||+|||+|+||+|||||||+||++||+|+|++|+|+ |+|+|||+
T Consensus 245 lv~~~i~prdIlT~~af~NAi~v~~A~GGSTNavlHL~AIA~eagv~l~lddfd~is~~vP~l~~l~P~G~~~~~~d~~~ 324 (577)
T PRK13016 245 MVWEDLTPSQILTKAAFENAITVAMATGCSTNAVIHLIAMARRAGVPLSLDDLDRCGRTVPVIANIRPSGKTYLMEDFFY 324 (577)
T ss_pred HHHcCCCHHHhcCHHHHHHHHHHhcccCccccHHHHHHHHHHhcCCCCCHHHHHHHhccCcccceecCCCCcccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred hCCHHHHHHHHHHCCCCCCCCCcccCcCHHHHhccCCCCCCCCCccCCCCCCCCCCCCEEEEeccCCCCCeEEccccCCC
Q 007192 376 IGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFPHLSEGQDIIRPLSNPIKKTGHIQVLRGNLAPEGSVAKITGKEG 455 (613)
Q Consensus 376 aGGvpaVlk~L~~~glL~~d~lTVtGkTl~e~l~~~~~~~~d~~VIrp~~~P~~~~Ggl~vL~GNLAP~GAVvK~sa~~~ 455 (613)
|||+|+|||+|.+ .||+||+|||||||+|||++++. .|++||||+++||+++|||+||+|||||+|||+|+||++.
T Consensus 325 AGGvpavmk~L~~--~L~~d~lTVtG~Tl~e~l~~~~~--~d~~VI~~~~~P~~~~Ggl~iL~GNLAP~GaViK~sav~~ 400 (577)
T PRK13016 325 AGGLRALMKQLGD--KLHLDALTVTGKTLGDNLEGAKV--YNDDVIRPLDNPVYAEGSLAVLRGNLAPDGAVIKPAACDP 400 (577)
T ss_pred hcCHHHHHHHHHH--HhcCCCCCcCCCCHHHHHcCCCC--CCCCeeCChhcccCCCCCEEEeecCCCCCceEEEecccCC
Confidence 9999999999998 49999999999999999998753 3789999999999999999999999999999999999754
Q ss_pred --ceEEeeEEEecCHHHHHHHHhCCCCC--CCCeEEEEeCCCCCCCCCCCC--CcchHHHHHhCCCCCeeEEEcCCCCCC
Q 007192 456 --LYFSGPALVFEGEESMIAAISEDPMS--FKGKVVVIRGEGPKGGPGMPE--MLTPTSAIMGAGLGKEVALLTDGRFSG 529 (613)
Q Consensus 456 --~~f~GpA~VFdseeda~~aI~~g~I~--~~GdVvVIRyeGPkGgPGMpE--ml~~t~al~g~Gl~~~VALITDGRfSG 529 (613)
.+|+|||+|||||||+++||++|+|+ + ||||||||||||||||||| ||.++.++.++|| ++|||||||||||
T Consensus 401 ~~~~~~GpA~VF~see~a~~ai~~g~i~i~~-GdVvVIRyeGPkGgPGMpE~~ml~~~~~~~~~Gl-~~valITDGRfSG 478 (577)
T PRK13016 401 KFLVHRGPALVFDSYPEMKAAIDDENLDVTP-DHVMVLRNAGPQGGPGMPEWGMLPIPKKLLKQGV-RDMVRISDARMSG 478 (577)
T ss_pred cccEEEeeEEEECCHHHHHHHHhCCCcCCCC-CeEEEEeCCCCCCCCCCcccccchhHHHHHHcCC-ceeEEeccCccCC
Confidence 78999999999999999999999654 9 9999999999999999999 9995555666999 9999999999999
Q ss_pred CCCCcceEEecccccCCCCeEEeecCCEEEEecCCCEEEEecCHHHHHHHHhcCCCCCCCCchHHHHHHHHhCCCccCCc
Q 007192 530 GSHGFVVGHVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLTDEEMEERRRKWTPPPNKVNRGVLYKYIKNVQSASNGC 609 (613)
Q Consensus 530 as~G~~IGHVsPEAa~GGpIAlV~dGD~I~IDi~~r~L~l~v~~eeL~~R~~~w~~~~~~~~~G~l~~Y~~~V~sA~~GA 609 (613)
+|+|+|||||||||++|||||+|||||+|+||+++|+|+|+||||||++||++|+||++++++|||++|+++|+||++||
T Consensus 479 ~s~G~~igHVsPEAa~GGPIalV~dGD~I~IDi~~r~L~l~vs~eel~~R~~~~~~~~~~~~~G~l~~Y~~~v~sA~~Ga 558 (577)
T PRK13016 479 TSYGACVLHVAPEAYVGGPLALVRTGDIIELDVPARRLHLLVSDEELARRRAAWQPPERRYERGYGWMFSQHVEQADKGC 558 (577)
T ss_pred ccCCCEEEEEChhhhcCCcEEEEeCCCEEEEEcCCCEEEEecCHHHHHHHHHhcCCCCCcCCcHHHHHHHHhCcCHhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 007192 610 VTD 612 (613)
Q Consensus 610 ~~~ 612 (613)
+++
T Consensus 559 v~~ 561 (577)
T PRK13016 559 DFD 561 (577)
T ss_pred ccc
Confidence 986
No 7
>PF00920 ILVD_EDD: Dehydratase family; InterPro: IPR000581 Two dehydratases, dihydroxy-acid dehydratase (4.2.1.9 from EC) (gene ilvD or ILV3) and 6-phosphogluconate dehydratase (4.2.1.12 from EC) (gene edd) have been shown to be evolutionary related []. Dihydroxy-acid dehydratase catalyses the fourth step in the biosynthesis of isoleucine and valine, the dehydratation of 2,3-dihydroxy-isovaleic acid into alpha-ketoisovaleric acid. 6-Phosphogluconate dehydratase catalyses the first step in the Entner-Doudoroff pathway, the dehydratation of 6-phospho-D-gluconate into 6-phospho-2-dehydro-3-deoxy-D-gluconate. Another protein containing this signature is the Escherichia coli hypothetical protein yjhG. The N-terminal part of the proteins contains a cysteine that could be involved in the binding of a 2Fe-2S iron-sulphur cluster [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GP4_B.
Probab=100.00 E-value=3.9e-209 Score=1675.96 Aligned_cols=519 Identities=54% Similarity=0.917 Sum_probs=360.2
Q ss_pred CCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCC
Q 007192 90 KPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWY 169 (613)
Q Consensus 90 kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~ 169 (613)
||+|||+|||||++|||+||++|+++||+||++|||+||||+||++||||+|||+||||||+|||+|||+||+|+++|+|
T Consensus 1 KP~IgI~ns~~e~~Pc~~hl~~la~~vk~gi~~aGG~p~ef~ti~v~Dgi~~g~~GM~ysL~sRelIAd~iE~~~~a~~~ 80 (521)
T PF00920_consen 1 KPIIGIVNSWSEINPCHMHLRELAEAVKEGIRAAGGVPFEFNTIAVCDGIAMGTEGMRYSLPSRELIADSIEEMVRAHPF 80 (521)
T ss_dssp ------------------------------SS---EEEE---B---------SSSGGGGHHHHHHHHHHHHHHHHTT---
T ss_pred CCEEEEEeccccCCccchhHHHHHHHHHHHHHHcCCeEEEECCCcccchhcCCccccchhhhhHHHHHHHHHHHHhCCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEccCCCCCchhhHHhhhccCCCeEEEccCCCCCcccCCcccceehHHHHHHHHhcCCCCHHHHHHHHHhcCCCCCC
Q 007192 170 DANISIPGCDKNMPGTIMAMGRLNRPGIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYVSGSISDEQRMNVVLNSCPGAGA 249 (613)
Q Consensus 170 Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~gGpm~~G~~~g~~~~~~~~~e~~g~~~~G~i~~eel~~~E~~acp~~Gs 249 (613)
||+|+|+|||||+|||||||+|+|+|+||||||||+||+++|+++++.++||++|+|++|+||+|||+++|+++|||+|+
T Consensus 81 Dg~V~l~gCDK~~Pg~lMaaarlniPsi~v~gGpm~~G~~~G~~~~~~~~~e~~g~~~~G~i~~~el~~~e~~acp~~G~ 160 (521)
T PF00920_consen 81 DGMVLLGGCDKIVPGMLMAAARLNIPSIFVYGGPMLPGKYRGERIDITDVFEAVGAYAAGEISEEELEEIECNACPGPGS 160 (521)
T ss_dssp SEEEEE--STTCCHHHHHHHHTTTS-EEE--------------------------------THHHHHHHTTSS-HHHHHH
T ss_pred ceEEEeccCCCccHHHHHHHHHcCCCEEEEecCCCCCCcccccccchhHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchHHHHHHHHHHhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHhCCCCcccccCHHHHHHHHHHHHhcCCCchh
Q 007192 250 CGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRMDLKPRDIITKKSLRNAMVIVMALGGSTNA 329 (613)
Q Consensus 250 C~~mgTANTM~~~~EaLGm~LPGsa~~pA~~~~r~~~a~~aG~~iv~lv~~~i~PrdIlT~~af~NAi~v~~A~GGSTNa 329 (613)
|++|||||||+|++|||||+||||+++||++++|+++|+++|++||+|+++++|||||||++||||||+++||+|||||+
T Consensus 161 C~~mgTANTM~~~~EaLGmsLPgsa~~pA~~~~r~~~a~~~G~~iv~lv~~~i~prdIlT~~afeNAi~v~~A~GGSTNa 240 (521)
T PF00920_consen 161 CAGMGTANTMACLAEALGMSLPGSATIPAVDSERLRIAREAGRRIVELVEEGIRPRDILTREAFENAIRVDMAIGGSTNA 240 (521)
T ss_dssp HHH--------HHHHHTTSS-TTCCCS-TTSHHHHHHHHHHHHHHHHTSSS---HHHHSSHHHHHHHHHHHHHTT--TCH
T ss_pred CcchhhHHHHHHHHHHHccCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHhcCCCHHHHhhHHHHHHHHHHHHHhccCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHhCCCCChHHHHHhhCCCCceeeccCCChhhHHHHHhhCCHHHHHHHHHHCCCCCCCCCcccCcCHHHHhc
Q 007192 330 VLHLIAIARSVGLELSIDEFQKVSDEVPFLADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAK 409 (613)
Q Consensus 330 vLHL~AIA~eagi~ltl~dfd~is~~vP~l~~l~P~G~~~m~dl~~aGGvpaVlk~L~~~glL~~d~lTVtGkTl~e~l~ 409 (613)
+|||+|||+|+||+|||||||+||++||+|+|++|+|+|+|+|||+|||+|+|||+|.++|+||+||+|||||||+|||+
T Consensus 241 vlHL~AiA~eagi~l~l~dfd~is~~~P~l~~~~P~G~~~~~dl~~aGGvpavmk~L~~~GlL~~d~~TVtG~Tl~e~l~ 320 (521)
T PF00920_consen 241 VLHLLAIAREAGIDLTLDDFDRISRETPVLADLKPSGKYTMEDLHAAGGVPAVMKELLDAGLLHGDALTVTGKTLGENLA 320 (521)
T ss_dssp HHHHHHHHHHTT----HHHHHHHHTT--B-B--GGGSS--HHHHHHHTHHHHHHHHHHHTT-S----EETTEE-GGGGGE
T ss_pred HhhHHHHHHHhCCCCCHHHHHHHHHhhhheEEeCCCCccHHHHHHHhcCHHHHHHHhcccccccCCCCccCCCCHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCccCCCCCCCCCCCCEEEEeccCCCCCeEEccccC--CCceEEeeEEEecCHHHHHHHHhCCCCCCCCeEE
Q 007192 410 TFPHLSEGQDIIRPLSNPIKKTGHIQVLRGNLAPEGSVAKITGK--EGLYFSGPALVFEGEESMIAAISEDPMSFKGKVV 487 (613)
Q Consensus 410 ~~~~~~~d~~VIrp~~~P~~~~Ggl~vL~GNLAP~GAVvK~sa~--~~~~f~GpA~VFdseeda~~aI~~g~I~~~GdVv 487 (613)
+++..++|++||||+++|++++|||+||||||||+|||+|+|++ ++++|+|||+||||||||++||++++|++ ||||
T Consensus 321 ~~~~~~~~~~VI~~~~~P~~~~Ggl~vL~GNLAP~GAVvK~sav~~~~~~~~G~A~VFdsee~a~~ai~~~~i~~-gdVv 399 (521)
T PF00920_consen 321 DAEIKDPDQEVIRPLDNPISPEGGLAVLRGNLAPDGAVVKTSAVSPEMRRFTGPARVFDSEEDAIDAIDDGKIKP-GDVV 399 (521)
T ss_dssp EEESS-S-TTTB--TTS-SBSS--EEEEEETTEE--EEEE-TTS-GGGSEEEEEEEEESSGGGHHHHHHTTTTSS-SEEE
T ss_pred CCCCCCCCCCEeechhhcCCCCCCEEEeEcCCCCccEEEEccccCCcccEEEEEEEEeCCHHHHHHHHhcCCcCC-CCEE
Confidence 98755567889999999999999999999999999999999998 78899999999999999999999999999 9999
Q ss_pred EEeCCCCCCCCCCCCCcchHHHHHhCCCCCeeEEEcCCCCCCCCCCcceEEecccccCCCCeEEeecCCEEEEecCCCEE
Q 007192 488 VIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSHGFVVGHVCPEAQDGGPIGLIQNGDIINIDVQKRRI 567 (613)
Q Consensus 488 VIRyeGPkGgPGMpEml~~t~al~g~Gl~~~VALITDGRfSGas~G~~IGHVsPEAa~GGpIAlV~dGD~I~IDi~~r~L 567 (613)
|||||||||+|||||||.+|++|.++||+++|||||||||||+|+|+||||||||||+|||||+|||||+|+||+++|+|
T Consensus 400 VIRyeGPkGgPGMpEml~~t~al~g~Glg~~valITDGRfSG~t~G~~vgHvsPEAa~GGpIalV~dGD~I~IDi~~r~l 479 (521)
T PF00920_consen 400 VIRYEGPKGGPGMPEMLSPTAALVGMGLGKSVALITDGRFSGATRGPCVGHVSPEAAVGGPIALVRDGDRITIDIPNRRL 479 (521)
T ss_dssp EE-S-SHHHH-S--B--SSHHHHHHHCTT--EEEEESSB-SSS-SS-EEEEEES-GGGT-GGGC--TT-EEEEETTTTEE
T ss_pred EEeCCCCCcCcCchhhhhHHHHHhhCCCCCceeEeecCccCCcccCCEEEEECccccCCCCeEEEcCCCEEEEECCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCHHHHHHHHhcCCCCCCCCchHHHHHHHHhCCCccCCc
Q 007192 568 DVQLTDEEMEERRRKWTPPPNKVNRGVLYKYIKNVQSASNGC 609 (613)
Q Consensus 568 ~l~v~~eeL~~R~~~w~~~~~~~~~G~l~~Y~~~V~sA~~GA 609 (613)
+|+||||||++||++|+||++++.+|||++|+++|+||++||
T Consensus 480 ~l~v~deel~~R~~~w~~~~~~~~~G~l~~Y~~~v~~A~~GA 521 (521)
T PF00920_consen 480 DLLVSDEELARRRAAWKPPPPKYKRGYLAKYARLVSSASKGA 521 (521)
T ss_dssp EE-S-HHHHCC-------GGGTSSGGGCHHHHCT---GGGTS
T ss_pred EEecCHHHHHHHHhhcCCCCCCCChHHHHHHHHhCcchhccC
Confidence 999999999999999999999999999999999999999997
No 8
>PRK13017 dihydroxy-acid dehydratase; Provisional
Probab=100.00 E-value=5.9e-204 Score=1651.33 Aligned_cols=544 Identities=35% Similarity=0.579 Sum_probs=531.0
Q ss_pred CCCCcCCCCCCch----hhHHHHHhCCCCcCcC--CCCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEecc
Q 007192 60 KYSSRVTEPKSQG----GSQAILHGVGLSEADM--SKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTI 133 (613)
Q Consensus 60 ~~s~~~~~g~~~a----~~ra~l~a~G~~ded~--~kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~ti 133 (613)
.||+.++++.+++ +||++||++||++||| +||+|||+|||||++|||+||++|+++||+||+++||+||||+||
T Consensus 11 ~rs~~~~~~~~~~~~~~~~ra~~~a~G~~~ed~~~~KP~IgI~ns~se~~Pch~hl~~la~~vk~gI~~aGG~p~ef~ti 90 (596)
T PRK13017 11 LRSQEWFDNPDHPDMTALYLERYMNYGLTREELQSGKPIIGIAQTGSDLSPCNRHHLELAERVKEGIRDAGGIPMEFPVH 90 (596)
T ss_pred cccccccCCcccccccHHHHHHHHHcCCChHHhccCCCEEEEEecccCCcCchhhHHHHHHHHHHHHHHcCCeeEecccc
Confidence 3489999999998 9999999999999999 899999999999999999999999999999999999999999999
Q ss_pred ccCcccccCccCceecccchHHHHHHHHHHHcccCCCcEEEccCCCCCchhhHHhhhccCCCeEEEccCCCCCcccCCcc
Q 007192 134 GVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDANISIPGCDKNMPGTIMAMGRLNRPGIMVYGGTIKPGHFQGHT 213 (613)
Q Consensus 134 av~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~gGpm~~G~~~g~~ 213 (613)
++||+++|+| ||+|||+|||+||+|+++|+|||+|+|+|||||+|||||||+|+|+|+||||||||+||.|+|++
T Consensus 91 ~v~d~~~~~~-----~l~sRelIAd~iE~~~~a~~~Dg~V~i~gCDK~~PG~lMaaarlniP~i~v~GG~m~~G~~~g~~ 165 (596)
T PRK13017 91 PIQETGKRPT-----AALDRNLAYLGLVEILYGYPLDGVVLTTGCDKTTPACLMAAATVDLPAIVLSGGPMLDGWHEGER 165 (596)
T ss_pred cccccCCCcc-----cccCHHHHHHHHHHHHhcCCcceEEEeccCCCccHHHHHHHHhcCCCEEEEeCCCcCCCCCCCcC
Confidence 9999999998 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-ceehHHHHHHHHhcCCCCHHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHhcCCCCCCCCCCCCChhHHHHHHHHHH
Q 007192 214 Y-DIVSAFQVYGEYVSGSISDEQRMNVVLNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGK 292 (613)
Q Consensus 214 ~-~~~~~~e~~g~~~~G~i~~eel~~~E~~acp~~GsC~~mgTANTM~~~~EaLGm~LPGsa~~pA~~~~r~~~a~~aG~ 292 (613)
+ ++.++||++|+|++|+||+|||.++|+++|||+|+|+||||||||||++|||||+||||+++||++++|+++|+++|+
T Consensus 166 ~~~~~~~~e~~g~~~~G~i~~eel~~~e~~acp~~GsC~gmgTANTM~~l~EaLGm~LPgsa~~pA~~~~r~~~a~~aG~ 245 (596)
T PRK13017 166 VGSGTVIWKARELLAAGEIDYEEFMELVASSAPSVGHCNTMGTASTMNALAEALGMSLPGCAAIPAPYRERGQMAYATGK 245 (596)
T ss_pred cccchhHHHHHHHHHcCCCCHHHHHHHHHhcCCCCCccccccHHHHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHHHHHH
Confidence 9 599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCcccccCHHHHHHHHHHHHhcCCCchhHHhHHHHHHHhCCCCChHHHHHhhCCCCceeeccCCChhhHHH
Q 007192 293 YLLELLRMDLKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVPFLADLKPSGKYVMED 372 (613)
Q Consensus 293 ~iv~lv~~~i~PrdIlT~~af~NAi~v~~A~GGSTNavLHL~AIA~eagi~ltl~dfd~is~~vP~l~~l~P~G~~~m~d 372 (613)
+||+|+++|+|||||||++||+|||+++||+|||||++|||+|||+|+||+|||||||+||++||+|+|++|+|+|+|+|
T Consensus 246 ~iv~lv~~~i~p~dIlT~~afeNAi~v~~A~GGSTNavlHL~AIA~eagi~l~lddfd~is~~vP~l~~l~PsG~~~m~D 325 (596)
T PRK13017 246 RIVEMVWEDLKPSDILTREAFENAIVVNSAIGGSTNAPIHLIAIARHAGVELSLDDWQRVGEDVPLLVNLQPAGKYLGED 325 (596)
T ss_pred HHHHHHHcCCChHHhcCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHcCCCCCHHHHHHHhccCCeeEEecCCCcccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCHHHHHHHHHHCCCCCCCCCcccCcCHHHHhccCCCCCCCCCccCCCCCCCCCCCCEEEEeccCCCCCeEEcccc
Q 007192 373 VHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFPHLSEGQDIIRPLSNPIKKTGHIQVLRGNLAPEGSVAKITG 452 (613)
Q Consensus 373 l~~aGGvpaVlk~L~~~glL~~d~lTVtGkTl~e~l~~~~~~~~d~~VIrp~~~P~~~~Ggl~vL~GNLAP~GAVvK~sa 452 (613)
||+|||+|+|||+|+++||||+||+|||||||+|||++++. .|++||||+++|++++|||+||+|||| +|||+|+||
T Consensus 326 l~~aGGvpavmk~L~~~glL~~d~lTVtG~Tl~e~l~~~~~--~~~~VI~p~~~P~~~~ggl~vL~GNLA-~GAViK~sa 402 (596)
T PRK13017 326 FHRAGGVPAVLAELLRAGLLHGDALTVSGRTIGENIAGAPA--PDRDVIRPYDAPLKERAGFLVLRGNLF-DSAIMKTSV 402 (596)
T ss_pred HHHCcCHHHHHHHHHHCCCcCCCCCCcCCcCHHHHhccCcC--CCCCccCCccccCCCCCCEEEEEecCc-CCceeEccc
Confidence 99999999999999999999999999999999999998853 489999999999999999999999999 999999999
Q ss_pred CCC-c------------eEEeeEEEecCHHHHHHHHhCCCCCCC-CeEEEEeCCCCCCCCCCCCC--cchHHHHHhCCCC
Q 007192 453 KEG-L------------YFSGPALVFEGEESMIAAISEDPMSFK-GKVVVIRGEGPKGGPGMPEM--LTPTSAIMGAGLG 516 (613)
Q Consensus 453 ~~~-~------------~f~GpA~VFdseeda~~aI~~g~I~~~-GdVvVIRyeGPkGgPGMpEm--l~~t~al~g~Gl~ 516 (613)
++. . +|+|||+|||||||+++||++++|+.+ |||||||||||||||||||| |.+|++|+++||
T Consensus 403 v~~~~~~~~~~~~~~~~~~~GpA~VF~see~a~~ai~~g~i~~~~gdVvVIRyeGPkGgPGMpEm~~l~~t~al~g~Gl- 481 (596)
T PRK13017 403 ISEEFRERYLSEPGDENAFEGRAVVFDGPEDYHARIDDPALDIDEHCILVIRGAGPVGYPGSAEVVNMQPPAALLKRGI- 481 (596)
T ss_pred cCHHHhhhhccccCcCCeEEEeEEEECCHHHHHHHHhCCCCCCCCCeEEEEeCCCCCCCCCCcchhhchhHHHHHhCCC-
Confidence 764 3 799999999999999999999977551 77999999999999999998 899999999999
Q ss_pred CeeEEEcCCCCCCCCCCcceEEecccccCCCCeEEeecCCEEEEecCCCEEEEecCHHHHHHHHhcCCCCCCCCchHHHH
Q 007192 517 KEVALLTDGRFSGGSHGFVVGHVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLTDEEMEERRRKWTPPPNKVNRGVLY 596 (613)
Q Consensus 517 ~~VALITDGRfSGas~G~~IGHVsPEAa~GGpIAlV~dGD~I~IDi~~r~L~l~v~~eeL~~R~~~w~~~~~~~~~G~l~ 596 (613)
++|||||||||||+|+|+|||||||||++|||||+|||||+|+||+++|+|+|+||||||++||+.|+||++++.+|||+
T Consensus 482 ~~VaLITDGRfSGat~G~~VgHVsPEAa~GGPIalV~dGD~I~IDi~~r~l~l~vsdeEl~~R~~~~~~~~~~~~~G~l~ 561 (596)
T PRK13017 482 RSLPCIGDGRQSGTSGSPSILNASPEAAVGGGLALLRTGDRIRIDLNKRRVDVLVSDEELARRRAALKPPVPPSQTPWQE 561 (596)
T ss_pred CeeEEEcccCCCCccCCCeeEEEChhhccCCcEEEEeCCCEEEEECCCCEEEEecCHHHHHHHHHhCCCCCCcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999899999999
Q ss_pred HHHHhCCCccCCcccC
Q 007192 597 KYIKNVQSASNGCVTD 612 (613)
Q Consensus 597 ~Y~~~V~sA~~GA~~~ 612 (613)
+|+++|+||++||+++
T Consensus 562 ~Y~~~v~sA~~Ga~~~ 577 (596)
T PRK13017 562 LYRKHVGQLSTGACLE 577 (596)
T ss_pred HHHHhCcChhcCCccc
Confidence 9999999999999986
No 9
>TIGR01196 edd 6-phosphogluconate dehydratase. A close homolog, designated MocB (mannityl opine catabolism), is found in a mannopine catabolism region of a plasmid of Agrobacterium tumefaciens. However, it is not essential for mannopine catabolism, branches within the cluster of 6-phosphogluconate dehydratases (with a short branch length) in a tree rooted by the presence of other dehydyatases. It may represent an authentic 6-phosphogluconate dehydratase, redundant with the chromosomal copy shown to exist in plasmid-cured strains. This model includes mocB above the trusted cutoff, although the designation is somewhat tenuous.
Probab=100.00 E-value=2.1e-192 Score=1559.57 Aligned_cols=516 Identities=32% Similarity=0.502 Sum_probs=497.2
Q ss_pred CcCcCCCCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEE-eccccCcccccCccCceecccchHHHHHHHHH
Q 007192 84 SEADMSKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRF-NTIGVSDAISMGTKGMCFSLQSRDLIADSIET 162 (613)
Q Consensus 84 ~ded~~kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef-~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~ 162 (613)
...+++||+|||+|||||++|||+||++|++.||++|+++||+|||| +||++||||+|||+||+|||+|||+|||+||+
T Consensus 58 ~~~~~~kP~IgIvns~~d~~p~h~hl~~~~~~vk~~i~~aGg~~~~~Gg~~a~cDGit~G~~GM~~SL~SRdlIA~sie~ 137 (601)
T TIGR01196 58 PLGSMKRPNLAIITAYNDMLSAHQPFKNYPDLIKKALQEANAVAQVAGGVPAMCDGVTQGYDGMELSLFSRDVIAMSTAI 137 (601)
T ss_pred HHhccCCCEEEEEeccccCccccccHHHHHHHHHHHHHHCCCEeEEeCCcCccCCCccCCCcccchhhhcHHHHHHHHHH
Confidence 45578999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHcccCCCcEEEccCCCCCchhhHHhhhcc-CCCeEEEccCCCCCcccCCcccceehHHHHHHHHhcCCCCHHHHHHHHH
Q 007192 163 VMSAQWYDANISIPGCDKNMPGTIMAMGRL-NRPGIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYVSGSISDEQRMNVVL 241 (613)
Q Consensus 163 ~~~a~~~Dg~V~l~gCDK~vPG~lMaaaRl-niPsi~v~gGpm~~G~~~g~~~~~~~~~e~~g~~~~G~i~~eel~~~E~ 241 (613)
++++|+|||+|+|++||||+|||||||+|+ |+|+||||||||+||.++|+++++.+ .|++|+|++|||.++|+
T Consensus 138 ~l~~~~fDg~v~l~~CDKivPG~lMaA~r~g~lP~IfV~gGpM~~G~~~g~~~~~~~------~~a~G~i~~eel~~~E~ 211 (601)
T TIGR01196 138 GLSHNMFDGALFLGVCDKIVPGLLIGALSFGHLPAVFVPSGPMVSGIPNKEKAKVRQ------LFAEGKVGREELLKSEM 211 (601)
T ss_pred HhcCCCcceeEEeccCCCCcHHHHHHHHhcCCCCEEEEeCCCcCCCCCCCceeeehh------hhhcCCCCHHHHHHHHH
Confidence 999999999999999999999999999999 99999999999999999999985554 69999999999999999
Q ss_pred hcCCCCCCCCccchHHHHHHHHHHhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHhCC--CCc-ccccCHHHHHHHHH
Q 007192 242 NSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRMD--LKP-RDIITKKSLRNAMV 318 (613)
Q Consensus 242 ~acp~~GsC~~mgTANTM~~~~EaLGm~LPGsa~~pA~~~~r~~~a~~aG~~iv~lv~~~--i~P-rdIlT~~af~NAi~ 318 (613)
++|||+|+|+||||||||||++|+|||+||||+++||++++|.++++++|++|++|++++ ++| |||||++||+|||+
T Consensus 212 ~a~ps~GtC~~mgTANTm~~l~EalGl~LPGsa~ipa~~~~r~~la~~ag~~iv~l~~~~~~~~p~~dIlt~~a~~NAi~ 291 (601)
T TIGR01196 212 ASYHAPGTCTFYGTANSNQMMMEFMGLHLPGASFVNPNTPLRDALTREAAKRLARMTGNGGEVLPLGEMIDEKSIVNALV 291 (601)
T ss_pred hcCCCCCcccccChHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCCChHHhCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999985 999 99999999999999
Q ss_pred HHHhcCCCchhHHhHHHHHHHhCCCCChHHHHHhhCCCCceeeccCCChhhHHHHHhhCCHHHHHHHHHHCCCCCCCCCc
Q 007192 319 IVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVPFLADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMT 398 (613)
Q Consensus 319 v~~A~GGSTNavLHL~AIA~eagi~ltl~dfd~is~~vP~l~~l~P~G~~~m~dl~~aGGvpaVlk~L~~~glL~~d~lT 398 (613)
++||+|||||++|||+|||+|+||+|||+|||+||++||+|++++|||+|+|+|||+|||+|+|||+|+++||||+|++|
T Consensus 292 ~~~A~GGSTN~vlHL~AIA~~aGi~l~~~dfd~is~~vP~La~v~P~G~~~~~df~~AGGvp~v~keL~~~glLh~D~~T 371 (601)
T TIGR01196 292 GLMATGGSTNHTMHLVAMARAAGIILNWDDFSELSDLVPLLARVYPNGSADVNHFQAAGGLPFLIRELLKAGLLHEDVHT 371 (601)
T ss_pred HccCCCccccHHHHHHHHHHHcCCCCCHHHHHHHhcCCCeEEEecCCCcccHHHHHHccCHHHHHHHHHHCCCcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcCHHHHhcc---------CCC---CCCCCCccCCCCCCCCCCCCEEEEeccCCCCCeEEccccCCC--ceEEeeEEE
Q 007192 399 VTGKTLAENAKT---------FPH---LSEGQDIIRPLSNPIKKTGHIQVLRGNLAPEGSVAKITGKEG--LYFSGPALV 464 (613)
Q Consensus 399 VtGkTl~e~l~~---------~~~---~~~d~~VIrp~~~P~~~~Ggl~vL~GNLAP~GAVvK~sa~~~--~~f~GpA~V 464 (613)
||||||+||+++ |.. ...|++||||+++||+++|||+||+|||+ |||+|+|+++. ++|+|||+|
T Consensus 372 VtG~tl~e~~~~p~l~~~~l~~~~~~~~~~d~~VIr~~~~P~~~~GGl~vL~GNL~--gaViK~sav~~e~~~~~GpA~V 449 (601)
T TIGR01196 372 VAGKGLSRYTKEPFLENGQLVWREAPEHSLDTDILRPVDDPFSANGGLKLLKGNLG--RAVIKISAVKPEHRVIEAPAIV 449 (601)
T ss_pred cCCcCHHHHHhcccccccccccccccCCCCCCCEECccccccCCCCCEEEEecccc--CeeeeccccCccceEEEeeEEE
Confidence 999999999997 522 23589999999999999999999999995 89999999754 789999999
Q ss_pred ecCHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCCcchH---HHHHhCCCCCeeEEEcCCCCCCCCCC-cceEEec
Q 007192 465 FEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPT---SAIMGAGLGKEVALLTDGRFSGGSHG-FVVGHVC 540 (613)
Q Consensus 465 Fdseeda~~aI~~g~I~~~GdVvVIRyeGPkGgPGMpEml~~t---~al~g~Gl~~~VALITDGRfSGas~G-~~IGHVs 540 (613)
||||||+++||++|+|++ ||||||||||||| |||||||++| ++|+++|| +|||||||||||+|+| +||||||
T Consensus 450 Fdsee~~~~ai~~g~i~~-g~VvViR~eGPkg-~GMpEm~~~t~~l~~L~~~Gl--~VALITDGRfSGaS~~g~~igHVs 525 (601)
T TIGR01196 450 FNDQAEVLAAFKAGELER-DFVAVVRFQGPKA-NGMPELHKLTPPLGVLQDRGF--KVALVTDGRMSGASGKVPAAIHVT 525 (601)
T ss_pred ECCHHHHHHHHhCCCCCC-CcEEEEeCCCCCC-CCchhhccCCchhHHHHhCCC--eEEEEccCccCCcCCCCCeEEEEC
Confidence 999999999999999999 9999999999998 7999999999 59999999 7999999999999966 9999999
Q ss_pred ccccCCCCeEEeecCCEEEEecCCCEEEEecCHHHHHHHHhcCCCC-CCCCc--hHHHHHHHHhCCCccCCccc
Q 007192 541 PEAQDGGPIGLIQNGDIINIDVQKRRIDVQLTDEEMEERRRKWTPP-PNKVN--RGVLYKYIKNVQSASNGCVT 611 (613)
Q Consensus 541 PEAa~GGpIAlV~dGD~I~IDi~~r~L~l~v~~eeL~~R~~~w~~~-~~~~~--~G~l~~Y~~~V~sA~~GA~~ 611 (613)
|||++|||||+|||||+|+||+++|+|+|+||||||++|+++|+|+ +++++ +|||++|+++|+||++||+.
T Consensus 526 PEAa~GGPIAlV~dGD~I~iD~~~~~L~l~v~~eEl~~R~~~~~~~~~~~~~~grg~l~~y~~~v~~A~~GA~~ 599 (601)
T TIGR01196 526 PEAALGGPIAKIRDGDLIRVDAVNGELNVLVDDAELNAREPETPDLSANSFGCGRELFASLRLNVSSAEEGAMS 599 (601)
T ss_pred hhhhcCCceEEEecCCEEEEEcCCCEEEEecCHHHHHHHHHhcCCCCccCcCcchHHHHHHHHhCcCHhhCCcc
Confidence 9999999999999999999999999999999999999999999984 56676 99999999999999999985
No 10
>PRK09054 phosphogluconate dehydratase; Validated
Probab=100.00 E-value=5.5e-191 Score=1550.80 Aligned_cols=514 Identities=31% Similarity=0.511 Sum_probs=495.1
Q ss_pred CcCCCCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEE-eccccCcccccCccCceecccchHHHHHHHHHHH
Q 007192 86 ADMSKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRF-NTIGVSDAISMGTKGMCFSLQSRDLIADSIETVM 164 (613)
Q Consensus 86 ed~~kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef-~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~ 164 (613)
.+++||+|||+|||||++|||+||++|++.||++|+++||+||+| +||++||||+|||+||+|||+|||+|||+||+++
T Consensus 61 ~~~~kP~IgIvns~nd~~p~h~~l~~~~~~vk~~v~~aGg~~~~~Gg~pa~cDGit~G~~GM~~SL~SRdlIA~sie~~l 140 (603)
T PRK09054 61 KAMTRPNIGIVTAYNDMLSAHQPYEHYPDIIKEAAREAGAVAQVAGGVPAMCDGVTQGQPGMELSLFSRDVIAMSTAVAL 140 (603)
T ss_pred HhcCCCEEEEEeccccCcCccccHHHHHHHHHHHHHHcCCccceeCCCCccCCCccCCCcchhhhhhhHHHHHHHHHHHh
Confidence 367899999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred cccCCCcEEEccCCCCCchhhHHhhhcc-CCCeEEEccCCCCCcccCCcccceehHHHHHHHHhcCCCCHHHHHHHHHhc
Q 007192 165 SAQWYDANISIPGCDKNMPGTIMAMGRL-NRPGIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYVSGSISDEQRMNVVLNS 243 (613)
Q Consensus 165 ~a~~~Dg~V~l~gCDK~vPG~lMaaaRl-niPsi~v~gGpm~~G~~~g~~~~~~~~~e~~g~~~~G~i~~eel~~~E~~a 243 (613)
++|+|||+|+|++||||+|||||||+|+ |+|+||||||||+||.++|++++ .+++|++|+|++|||.++|+++
T Consensus 141 ~~~~fDg~v~lg~CDKivPG~lMaA~r~g~lP~ifV~gGpM~~G~~~~e~~~------~~~~~a~G~i~~~el~~~E~~a 214 (603)
T PRK09054 141 SHNMFDAALLLGVCDKIVPGLLIGALSFGHLPAIFVPAGPMTSGLPNKEKAR------IRQLYAEGKVGRDELLEAESAS 214 (603)
T ss_pred hcCCcceEEEeccCCCCcHHHHHHHHhcCCCCEEEEeCCCcCCCCCCCccee------hHhHHHcCCCCHHHHHHHHhhc
Confidence 9999999999999999999999999999 79999999999999999999874 4458999999999999999999
Q ss_pred CCCCCCCCccchHHHHHHHHHHhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHhC--CCCc-ccccCHHHHHHHHHHH
Q 007192 244 CPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRM--DLKP-RDIITKKSLRNAMVIV 320 (613)
Q Consensus 244 cp~~GsC~~mgTANTM~~~~EaLGm~LPGsa~~pA~~~~r~~~a~~aG~~iv~lv~~--~i~P-rdIlT~~af~NAi~v~ 320 (613)
|||+|+|+||||||||||++|+|||+||||+++||++++|.++++++|++|++|+++ ++|| |||||++||+|||+++
T Consensus 215 ~ps~GtC~~mgTANTm~~l~EalGl~LPGsa~ipa~~~~R~~la~~ag~~i~~l~~~~~~~~P~~~Ilt~~af~NAi~~~ 294 (603)
T PRK09054 215 YHSPGTCTFYGTANSNQMLMEVMGLHLPGSSFVNPGTPLRDALTREAARRVLRLTALGNDYTPIGEVVDEKAIVNGIVAL 294 (603)
T ss_pred CCCCCcccccChHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhccCCCCchhhCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998 9999 9999999999999999
Q ss_pred HhcCCCchhHHhHHHHHHHhCCCCChHHHHHhhCCCCceeeccCCChhhHHHHHhhCCHHHHHHHHHHCCCCCCCCCccc
Q 007192 321 MALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVPFLADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVT 400 (613)
Q Consensus 321 ~A~GGSTNavLHL~AIA~eagi~ltl~dfd~is~~vP~l~~l~P~G~~~m~dl~~aGGvpaVlk~L~~~glL~~d~lTVt 400 (613)
||+|||||++|||+|||+|+||+|||||||+||++||+|++++|||+|+|+|||+|||+|+|||+|+++||||+|++|||
T Consensus 295 ~A~GGSTN~vlHL~AIA~~aGi~l~l~dfd~is~~vP~L~~v~P~G~~~~~df~~AGGvp~v~keL~~~GlLh~D~~TVt 374 (603)
T PRK09054 295 LATGGSTNHTIHLVAMARAAGIILTWDDFSDLSDVVPLLARVYPNGPADVNHFQAAGGMAFLIRELLDAGLLHEDVNTVA 374 (603)
T ss_pred hccCccccHHHHHHHHHHHcCCCCCHHHHHHHhccCCcceeecCCCcchHHHHHHccCHHHHHHHHHHCCCcCCCCCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCHHHHhcc---------CCC---CCCCCCccCCCCCCCCCCCCEEEEeccCCCCCeEEccccCC--CceEEeeEEEec
Q 007192 401 GKTLAENAKT---------FPH---LSEGQDIIRPLSNPIKKTGHIQVLRGNLAPEGSVAKITGKE--GLYFSGPALVFE 466 (613)
Q Consensus 401 GkTl~e~l~~---------~~~---~~~d~~VIrp~~~P~~~~Ggl~vL~GNLAP~GAVvK~sa~~--~~~f~GpA~VFd 466 (613)
|+||+||+++ |.. ...|++||||+++||+++|||+||+||| +|||+|+|+++ +++|+|||+|||
T Consensus 375 G~tl~e~~~~~~l~~~~~~~~~~~~~~~d~~VIr~~~~P~~~~GGl~vL~GNL--~gaViK~Sav~~e~~~~~GpA~VFd 452 (603)
T PRK09054 375 GFGLRRYTQEPFLEDGELVWRDGPEESLDDDVLRPVADPFSPDGGLKLLSGNL--GRAVIKVSAVKPEHRVIEAPARVFD 452 (603)
T ss_pred CCCHHHHHhcccccccccccccccCCCCCcCeEcCcccccCCCCCEEEEeccC--cCceeeccccCCcccEEEeeEEEEC
Confidence 9999999986 321 2358999999999999999999999999 59999999975 478999999999
Q ss_pred CHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCCcchH---HHHHhCCCCCeeEEEcCCCCCCCCCC-cceEEeccc
Q 007192 467 GEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPT---SAIMGAGLGKEVALLTDGRFSGGSHG-FVVGHVCPE 542 (613)
Q Consensus 467 seeda~~aI~~g~I~~~GdVvVIRyeGPkGgPGMpEml~~t---~al~g~Gl~~~VALITDGRfSGas~G-~~IGHVsPE 542 (613)
||||+++||++|+|++ ||||||||||||| |||||||++| ++|+++|+ +|||||||||||+|+| +||||||||
T Consensus 453 see~~~~Ai~~g~l~~-g~VvViR~eGPkg-~GMpEm~~~Tp~l~~L~~~Gl--~VALITDGRfSGaS~~~~~igHVsPE 528 (603)
T PRK09054 453 SQEEVQAAFKAGELDR-DFVVVVRFQGPKA-NGMPELHKLTPPLGVLQDRGF--KVALVTDGRMSGASGKVPAAIHVTPE 528 (603)
T ss_pred CHHHHHHHHhCCCCCC-CcEEEEeCCCCCC-CCchhhhcccchhHHHHhCCC--eEEEeccCccCCcCCCCCEEEEEChh
Confidence 9999999999999999 9999999999998 7999999998 66999999 7999999999999976 999999999
Q ss_pred ccCCCCeEEeecCCEEEEecCCCEEEEecCHHHHHHHHhcCCCCCC-C--CchHHHHHHHHhCCCccCCccc
Q 007192 543 AQDGGPIGLIQNGDIINIDVQKRRIDVQLTDEEMEERRRKWTPPPN-K--VNRGVLYKYIKNVQSASNGCVT 611 (613)
Q Consensus 543 Aa~GGpIAlV~dGD~I~IDi~~r~L~l~v~~eeL~~R~~~w~~~~~-~--~~~G~l~~Y~~~V~sA~~GA~~ 611 (613)
|++|||||+|||||+|+||+++|+|+|+||||||++|+++|+|+++ + +.+|||++|+++|+||++||++
T Consensus 529 Aa~GGPIAlV~dGD~I~iD~~~~~L~v~v~~eEl~~R~~~~~~~~~~~~G~~r~~l~~y~~~V~~A~~GA~~ 600 (603)
T PRK09054 529 ALDGGPIAKVRDGDIIRLDAETGELEVLVDEAELAAREPAPPDLSANRVGTGRELFAAFRQAVSSAEQGASV 600 (603)
T ss_pred hccCCcEEEEeCCCEEEEECCCCEEEEecCHHHHHHHHHhcCCCCccccCccHHHHHHHHHhCcChhcCCcc
Confidence 9999999999999999999999999999999999999999998765 3 3678999999999999999987
No 11
>TIGR03432 yjhG_yagF probable dehydratase, YjhG/YagF family. This homolog of dihydroxy-acid dehydratases has an odd, sparse distribution. Members are found in two Acidobacteria, two Planctomycetes, Bacillus clausii KSM-K16, and (in two copies each) in strains K12-MG1655 and W3110 of Escherichia coli. The local context is not well conserved, but a few members are adjacent to homologs of the gluconate:H+ symporter (see TIGR00791).
Probab=100.00 E-value=1.1e-188 Score=1536.37 Aligned_cols=528 Identities=34% Similarity=0.511 Sum_probs=503.9
Q ss_pred hCCCCcCcCCCCeEEEEecCCC------------ccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCce
Q 007192 80 GVGLSEADMSKPQVGISSVWYE------------GNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMC 147 (613)
Q Consensus 80 a~G~~ded~~kP~IgI~ns~~e------------~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ 147 (613)
++||+||||+||+|||+|||+| ++|||+||++|+++||+||+++||+||||+||++||||+|||+||+
T Consensus 45 a~G~~d~dl~kP~I~I~ns~~~~~~~~~~~~~l~~~pgh~hl~~l~~~vk~gi~~aGg~P~ef~ti~vcDGia~G~~GM~ 124 (640)
T TIGR03432 45 GMGWDPARLLGKEFLILSTHGGLRAADGTPIALGYHTGHWEVGLLMKAAAEEIKRDGAVPFAGFVSDPCDGRTQGTTGMF 124 (640)
T ss_pred cCCCCHHHhCCCEEEEEeCCcccccccccccccCcCCCcccHHHHHHHHHHHHHHcCceeEEeCCCCccCccccCCCcce
Confidence 7999999999999999999995 5599999999999999999999999999999999999999999999
Q ss_pred ecccchHHHHHHHHHHHcccC-CCcEEEccCCCCCchhhHHhhh-ccCCCeEEEccCCCCCcccCCcccceehHHHHHHH
Q 007192 148 FSLQSRDLIADSIETVMSAQW-YDANISIPGCDKNMPGTIMAMG-RLNRPGIMVYGGTIKPGHFQGHTYDIVSAFQVYGE 225 (613)
Q Consensus 148 ysL~sRelIAdsiE~~~~a~~-~Dg~V~l~gCDK~vPG~lMaaa-RlniPsi~v~gGpm~~G~~~g~~~~~~~~~e~~g~ 225 (613)
|||+|||+|||+||+++++|+ |||+|+|++||||+|||||||+ |+|||+||||||||+||+ .|++++ .+|+..++
T Consensus 125 ySL~sRelIA~siE~~v~ah~~~DgvV~i~~CDK~~PgmlMAaa~rlniPsI~V~GGpml~G~-~g~~~~--~~~~~~~~ 201 (640)
T TIGR03432 125 DSLPYRNDAAMVMRRLIRSLPTRKGVIGIATCDKGLPAMMMALAATHHLPTVLVPGGVTLPPE-VGEDAG--KVQTIGAR 201 (640)
T ss_pred echhhHHHHHHHHHHHHhccCcCCeEEEeCcCCCchHHHHHHHHHhCCCCEEEEeCCCcCCCC-CCCcch--HHHHHHHH
Confidence 999999999999999999999 9999999999999999999998 699999999999999998 477766 35666667
Q ss_pred HhcCCCCHHHHHHHHHhcCCCCC-CCCccchHHHHHHHHHHhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHhCCCCc
Q 007192 226 YVSGSISDEQRMNVVLNSCPGAG-ACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRMDLKP 304 (613)
Q Consensus 226 ~~~G~i~~eel~~~E~~acp~~G-sC~~mgTANTM~~~~EaLGm~LPGsa~~pA~~~~r~~~a~~aG~~iv~lv~~~i~P 304 (613)
|++|+||+||+.++|+++|||+| +|+||||||||||++|||||+||||+++||++++|+++|+++|++||+|+++|+||
T Consensus 202 ~~~G~is~eel~~~e~~acps~GGsC~~mgTANTM~~laEALGlsLPgsa~iPA~~~~r~~~a~~ag~~iv~lv~~~i~p 281 (640)
T TIGR03432 202 FSNGEITLEEAAEAGCRACASPGGGCQFLGTAATSQVVAEALGLALPHSALAPSGQPIWLDMARRSARAALELSQKGLST 281 (640)
T ss_pred HHcCCCCHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCHHHHHHHHHHHHhcCCCchhHHhHHHHHHHhCCCC-ChHHHHHhhCCCCceeeccCCCh--hhHHHHHhhCCHHH
Q 007192 305 RDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLEL-SIDEFQKVSDEVPFLADLKPSGK--YVMEDVHKIGGTPA 381 (613)
Q Consensus 305 rdIlT~~af~NAi~v~~A~GGSTNavLHL~AIA~eagi~l-tl~dfd~is~~vP~l~~l~P~G~--~~m~dl~~aGGvpa 381 (613)
|||||++||+|||+++||+|||||++|||+|||+|+||++ ||||||+||++||+|+|++|+|+ |+|+|||+|||+|+
T Consensus 282 rdIlT~~AfeNAi~v~~A~GGSTNavLHL~AIA~eaGi~l~tlddfd~is~~vP~L~~l~P~G~~~~~~~d~~~AGGvpa 361 (640)
T TIGR03432 282 RDILTDKAIENAMVVHAAFGGSTNLLLHIPAIAHAAGCRRPTVDDWTRINRKVPRLVDALPNGPVGHPTVRVFLAGGVPE 361 (640)
T ss_pred HHhcCHHHHHHHHHHccccCccccHHHHHHHHHHhcCCCCCCHHHHHHHhcccCceEEeccCCCCCccHHHHHHccCHHH
Confidence 9999999999999999999999999999999999999995 99999999999999999999999 99999999999999
Q ss_pred HHHHHHHCCCCCCCCCcccCcCHHHHhccCCCC---------------CCCCCccCCCCCCCCC--CCCEEEEeccCCCC
Q 007192 382 VIRYLLELGFLDGDCMTVTGKTLAENAKTFPHL---------------SEGQDIIRPLSNPIKK--TGHIQVLRGNLAPE 444 (613)
Q Consensus 382 Vlk~L~~~glL~~d~lTVtGkTl~e~l~~~~~~---------------~~d~~VIrp~~~P~~~--~Ggl~vL~GNLAP~ 444 (613)
|||+|+++||||+||+|||||||+|||++|+.. ..+++||||+++|+.. +|||+||+|||||+
T Consensus 362 Vmk~L~~~GlL~~d~~TVtG~TL~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~VI~~~~~p~~~g~~ggl~vL~GNLAP~ 441 (640)
T TIGR03432 362 VMLHLRRAGLLHEDVLTVTGETLGENLDWWENSERRARMKQRLRERDGVDPDDVIMSPAQAKARGLTSTVTFPKGNLAPE 441 (640)
T ss_pred HHHHHHHCCCcCCCCCCcCCcCHHHHHhhccccccccccccccccccCCCCCCeECchhcCCCcCCCcceEEEeccCCCC
Confidence 999999999999999999999999999987421 1267999999999777 79999999999999
Q ss_pred CeEEccccCCC--------ceEEeeEEEecCHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCCcchHHHHHhCCCC
Q 007192 445 GSVAKITGKEG--------LYFSGPALVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLG 516 (613)
Q Consensus 445 GAVvK~sa~~~--------~~f~GpA~VFdseeda~~aI~~g~I~~~GdVvVIRyeGPkGgPGMpEml~~t~al~g~Gl~ 516 (613)
|||+|+|+++. .+|+||||||||||||++||++++|++ ||||||||||||| |||||||.+|++|.++|+|
T Consensus 442 GAViK~sav~~~~~~~~~~~~~~GpArVFdsee~a~~AI~~g~I~~-GdVvVIRyeGPkG-~GMpEml~~t~al~g~glG 519 (640)
T TIGR03432 442 GSVIKSTAIDPSVVDEDGVYRHTGPARVFSSEKSAIAAIKHGKIEA-GDVLVLIGRGPSG-TGMEETYQVTSALKYLSFG 519 (640)
T ss_pred ceEEEecccCchhcccccceEEEEeEEEECCHHHHHHHHhCCCCCC-CcEEEEeCCCCCC-CCchhhhcchhhHhhcCCC
Confidence 99999999764 579999999999999999999999999 9999999999998 7999999999999999999
Q ss_pred CeeEEEcCCCCCCCCCCcceEEecccccCCCCeEEeecCCEEEEecCCCEEEEec----C----------HHHHHHHHhc
Q 007192 517 KEVALLTDGRFSGGSHGFVVGHVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQL----T----------DEEMEERRRK 582 (613)
Q Consensus 517 ~~VALITDGRfSGas~G~~IGHVsPEAa~GGpIAlV~dGD~I~IDi~~r~L~l~v----~----------~eeL~~R~~~ 582 (613)
++|||||||||||+|+|+|||||||||++|||||+|||||+|+||+++|+|+-.| + +++|++|+.+
T Consensus 520 ~~VALITDGRFSG~S~G~~IGHVsPEAa~GGPIalVrdGD~I~IDi~~r~l~g~~~~~~~~~~~~~~~~~~~~l~~r~~~ 599 (640)
T TIGR03432 520 KHVALITDARFSGVSTGACIGHVGPEALAGGPIGKVRDGDLIEIIIDRNTLEGTVNLVGTEDGNQLPEEGAAVLAARPLR 599 (640)
T ss_pred CeEEEecccCcCCCCCCCEEEEEChhhhCCCcEEEEeCCCEEEEEcCCCeEEEEEEEEecccccCChHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999999999999999999999987732 2 5678999876
Q ss_pred --CCCCCCCCchHHHHHHHHhCCCcc-CCcccC
Q 007192 583 --WTPPPNKVNRGVLYKYIKNVQSAS-NGCVTD 612 (613)
Q Consensus 583 --w~~~~~~~~~G~l~~Y~~~V~sA~-~GA~~~ 612 (613)
|.|++..+.++-|++|.+.|+... .||+.|
T Consensus 600 ~~~~~~~~~~~~~~l~~~~q~~~~~~~~g~~~d 632 (640)
T TIGR03432 600 PDLAPDPALPDDTRLWAALQQVSGGTWGGCVYD 632 (640)
T ss_pred ccCCCCCCCCcccHHHHHHHHhcCCcccccccc
Confidence 999999999999999999999999 999986
No 12
>PRK08211 putative dehydratase; Provisional
Probab=100.00 E-value=1.3e-184 Score=1502.86 Aligned_cols=528 Identities=33% Similarity=0.487 Sum_probs=494.6
Q ss_pred hCCCCcCcCCCCeEEEEecCCC------------ccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCce
Q 007192 80 GVGLSEADMSKPQVGISSVWYE------------GNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMC 147 (613)
Q Consensus 80 a~G~~ded~~kP~IgI~ns~~e------------~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ 147 (613)
++||++|||+||+|||+|||+| ++|||+||++|+++||+||+++||+||||+||++||||+|||+||+
T Consensus 51 a~G~~~~dl~kP~IgI~nt~~~~~~~~~~~~~~~~~pgh~hL~~l~~~vk~gi~~aGG~P~ef~ti~vcDGit~G~~GM~ 130 (655)
T PRK08211 51 GMGWDPARLLGKQFLILSTQGGIRAADGTPIALGYHTGHWEVGLLMKAAAEEIKRNGGIPFAGYVSDPCDGRTQGTTGMF 130 (655)
T ss_pred cCCCCHHHcCCCEEEEEeCCccccccccccccCCCcCCchhHHHHHHHHHHHHHHcCCeeEEeCCCCCcCccccCCccce
Confidence 7999999999999999999996 5999999999999999999999999999999999999999999999
Q ss_pred ecccchHHHHHHHHHHHcccC-CCcEEEccCCCCCchhhHHhhh-ccCCCeEEEccCCCCCcccCCcccceehHHHHHHH
Q 007192 148 FSLQSRDLIADSIETVMSAQW-YDANISIPGCDKNMPGTIMAMG-RLNRPGIMVYGGTIKPGHFQGHTYDIVSAFQVYGE 225 (613)
Q Consensus 148 ysL~sRelIAdsiE~~~~a~~-~Dg~V~l~gCDK~vPG~lMaaa-RlniPsi~v~gGpm~~G~~~g~~~~~~~~~e~~g~ 225 (613)
|||+|||+|||+||+++++|+ |||+|+|++||||+|||||||+ |+|||+||||||||+||+ +|++++ ++|+.+++
T Consensus 131 ySL~sRelIA~siE~~~~a~~~~DGvV~l~~CDK~~PGmLMAaa~~~niPsI~V~GGpml~G~-~g~~~~--~~~~~~~~ 207 (655)
T PRK08211 131 DSLPYRNDAAIVFRRLIRSLPTRKAVIGVATCDKGLPAMMMALAGMHDLPTVLVPGGVTLPPT-DGEDAG--KVQTIGAR 207 (655)
T ss_pred echhhHHHHHHHHHHHHcccCcCCeEEEeCcCCCchHHHHHHHHHcCCCCEEEEeCCCCCCCC-CCCcch--HHHHHHHH
Confidence 999999999999999999955 9999999999999999999999 679999999999999998 788766 48888888
Q ss_pred HhcCCCCHHHHHHHHHhcCCCCC-CCCccchHHHHHHHHHHhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHhCCCCc
Q 007192 226 YVSGSISDEQRMNVVLNSCPGAG-ACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRMDLKP 304 (613)
Q Consensus 226 ~~~G~i~~eel~~~E~~acp~~G-sC~~mgTANTM~~~~EaLGm~LPGsa~~pA~~~~r~~~a~~aG~~iv~lv~~~i~P 304 (613)
|++|+||+||+.++|+++|||+| +|+||||||||||++|||||+||||+++||++++|+++|+++|++||+|+++|+||
T Consensus 208 ~~~G~is~eel~~~e~~acps~GGsC~gmgTANTM~~laEALGlsLPGsa~iPA~~~~r~~~A~~aG~~iv~lv~~~i~p 287 (655)
T PRK08211 208 FANGELSLQEAAEAGCRACASPGGGCQFLGTAATSQVVAEALGLALPHSALAPSGQPIWLEIARRSARAVLELEQKGITT 287 (655)
T ss_pred HHcCCCCHHHHHHHHHhcCCCCCccccchhhHHHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCHHHHHHHHHHHHhcCCCchhHHhHHHHHHHhCCCC-ChHHHHHhhCCCCceeeccCCCh--hhHHHHHhhCCHHH
Q 007192 305 RDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLEL-SIDEFQKVSDEVPFLADLKPSGK--YVMEDVHKIGGTPA 381 (613)
Q Consensus 305 rdIlT~~af~NAi~v~~A~GGSTNavLHL~AIA~eagi~l-tl~dfd~is~~vP~l~~l~P~G~--~~m~dl~~aGGvpa 381 (613)
|||||++||+|||+++||+|||||++|||+|||+|+||+| ||||||+||++||+|+|++|+|+ |.|+|||+|||+|+
T Consensus 288 rdIlT~~AfeNAi~v~~A~GGSTNavLHL~AIA~eaGi~l~tlddfd~is~~vP~L~~l~P~G~~~~~~~dl~~AGGvpa 367 (655)
T PRK08211 288 RDILTDKAIENAMVVHAAFGGSTNLLLHIPAIAHAAGCRRPTVDDWTRINRRVPRLVSVLPNGPVYHPTVRAFLAGGVPE 367 (655)
T ss_pred HHhcCHHHHHHHHHHccccCccccHHHHHHHHHHhcCCCCCCHHHHHHHhccCCceeEecCCCCCCchHHHHHhcCCHHH
Confidence 9999999999999999999999999999999999999999 69999999999999999999999 99999999999999
Q ss_pred HHHHHHHCCCCCCCCCcccCcCHHHHhccCCCC---------------CCCCCccCCCCCCCCC--CCCEEEEeccCCCC
Q 007192 382 VIRYLLELGFLDGDCMTVTGKTLAENAKTFPHL---------------SEGQDIIRPLSNPIKK--TGHIQVLRGNLAPE 444 (613)
Q Consensus 382 Vlk~L~~~glL~~d~lTVtGkTl~e~l~~~~~~---------------~~d~~VIrp~~~P~~~--~Ggl~vL~GNLAP~ 444 (613)
|||+|+++||||+||+|||||||+|||++|+.. ..|++||||+++|+.+ +|||+||+|||||+
T Consensus 368 VmkeL~~~GlL~~d~~TVtG~Tl~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~VI~~~~~p~~~gl~ggl~vL~GNLAP~ 447 (655)
T PRK08211 368 VMLHLRALGLLHEDAMTVTGETLGENLDWWEHSERRARFRQRLREQDGIDPDDVIMPPAQAKARGLTSTVTFPVGNIAPE 447 (655)
T ss_pred HHHHHHhCCCcCCCCCCcCCCCHHHHHhhccccccccccccccccccCCCCCCeEcchhcCCCcCCCCceEEEeccCCCC
Confidence 999999999999999999999999999987421 1368999999999888 89999999999999
Q ss_pred CeEEccccCCC--------ceEEeeEEEecCHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCCcchHHHHHhCCCC
Q 007192 445 GSVAKITGKEG--------LYFSGPALVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLG 516 (613)
Q Consensus 445 GAVvK~sa~~~--------~~f~GpA~VFdseeda~~aI~~g~I~~~GdVvVIRyeGPkGgPGMpEml~~t~al~g~Gl~ 516 (613)
|||+|+|+++. .+|+||||||||||||++||++|+|++ ||||||||||||| |||||||.+|++|.++|+|
T Consensus 448 GAViK~sav~~~~~~~~~~~~~~GpArVF~seeda~~AI~~g~I~~-GdVvVIRyeGPkG-~GMpEml~~t~al~g~glG 525 (655)
T PRK08211 448 GSVIKSTAIDPSVIDEDGVYRHTGRARVFTSEKSAIAAIKHGEIKA-GDILVLIGGGPSG-TGMEETYQITSALKHLSFG 525 (655)
T ss_pred CeEEEecccCchhcccccceEEEEeEEEECCHHHHHHHHhCCCCCC-CcEEEEeCCCCCC-CCchhhhchhhhHhhcCCC
Confidence 99999999764 579999999999999999999999999 9999999999998 6999999999999999999
Q ss_pred CeeEEEcCCCCCCCCCCcceEEecccccCCCCeEEeecCCEEEEecCCCEEEEecC----------HH----HHHHHHhc
Q 007192 517 KEVALLTDGRFSGGSHGFVVGHVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLT----------DE----EMEERRRK 582 (613)
Q Consensus 517 ~~VALITDGRfSGas~G~~IGHVsPEAa~GGpIAlV~dGD~I~IDi~~r~L~l~v~----------~e----eL~~R~~~ 582 (613)
++|||||||||||+|+|+|||||||||++|||||+|||||+|+||+++|+|+=.|+ .| +|++|..+
T Consensus 526 ~~VALITDGRFSG~S~G~~IGHVsPEAa~GGPIAlVrdGD~I~IDi~~r~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~ 605 (655)
T PRK08211 526 KHVSLITDARFSGVSTGACIGHVGPEALAGGPIGKLRDGDLIEIIIDRRTLEGSVNFIGTRDDELTPEEGARILAARPPH 605 (655)
T ss_pred CeEEEeccCCCCCCCCCCEEEEEChhhhcCCcEEEEeCCCEEEEECCCCEEeeeEEEEEecCcccCHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999875432 33 45555432
Q ss_pred --CCCC-CCCCchHHHHHHHHhCCCccCCcccC
Q 007192 583 --WTPP-PNKVNRGVLYKYIKNVQSASNGCVTD 612 (613)
Q Consensus 583 --w~~~-~~~~~~G~l~~Y~~~V~sA~~GA~~~ 612 (613)
..|. ..+..+-+.+..++..+....||++|
T Consensus 606 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~ 638 (655)
T PRK08211 606 PDLAPDPELPDDTRLWAALQSVSGGTWGGCVYD 638 (655)
T ss_pred cccCCCCCCCCchHHHHHHHHhcCCccccceee
Confidence 1221 12234667778888888889999986
No 13
>KOG2448 consensus Dihydroxy-acid dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-184 Score=1412.28 Aligned_cols=562 Identities=78% Similarity=1.254 Sum_probs=552.6
Q ss_pred CCCCCCcCCCCCcCCCCCCchhhHHHHHhCCCCcCcCCCCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEe
Q 007192 52 TTSPPKLNKYSSRVTEPKSQGGSQAILHGVGLSEADMSKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFN 131 (613)
Q Consensus 52 ~~~~~~~~~~s~~~~~g~~~a~~ra~l~a~G~~ded~~kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~ 131 (613)
+...++||++|..+++...+...+||||+.|+++|||+||+|||.+.|.|.+|||+||.+|.++||+||+.||-+.|+||
T Consensus 31 ~~v~kklnkys~~itepksqgasqamlyatgl~~ed~kkpqvgi~scwyegnpcnmhlldl~~rvkegvekagl~gfqfn 110 (596)
T KOG2448|consen 31 ITVTKKLNKYSSRITEPKSQGASQAMLYATGLSDEDLKKPQVGISSCWYEGNPCNMHLLDLSERVKEGVEKAGLVGFQFN 110 (596)
T ss_pred HHHHHHhhhhhheeCCccccchhhhhhhhccCChhhccCcccceeeeeecCCccchhHHhHHHHHHHhHhhccceeEEec
Confidence 66778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcccccCccCceecccchHHHHHHHHHHHcccCCCcEEEccCCCCCchhhHHhhhccCCCeEEEccCCCCCcccC-
Q 007192 132 TIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDANISIPGCDKNMPGTIMAMGRLNRPGIMVYGGTIKPGHFQ- 210 (613)
Q Consensus 132 tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~gGpm~~G~~~- 210 (613)
||+|+|||+||+.||||||.|||+||||||+++.+|+|||-|.|+||||++||.+||+.|+|.|+|+||||+++||++.
T Consensus 111 tigvsdgismgt~gmryslqsreiiadsietvm~aqwydanisipgcdknmpg~~mamgr~nrpsimvyggti~pgh~~c 190 (596)
T KOG2448|consen 111 TIGVSDGISMGTRGMRYSLQSREIIADSIETVMSAQWYDANISIPGCDKNMPGTIMAMGRLNRPSIMVYGGTIKPGHFQC 190 (596)
T ss_pred ccccccccccccccceeeehhhHHHHHHHHHHHhhhhcccccccCCcCCCCccceehhcccCCCceEEecccccCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred --CcccceehHHHHHHHHhcCCCCHHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHhcCCCCCCCCCCCCChhHHHHHH
Q 007192 211 --GHTYDIVSAFQVYGEYVSGSISDEQRMNVVLNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECR 288 (613)
Q Consensus 211 --g~~~~~~~~~e~~g~~~~G~i~~eel~~~E~~acp~~GsC~~mgTANTM~~~~EaLGm~LPGsa~~pA~~~~r~~~a~ 288 (613)
.+-+||++.|+.+|+|..|+|++|+.+++-.++||++|+|++|||||||+..+|||||+||+|+++||.+++|+..|+
T Consensus 191 ~~~~~idivsafqsygefisg~i~ee~r~dv~~hacpg~gacggmytantmasaaeamgmtlp~sss~pa~speklaec~ 270 (596)
T KOG2448|consen 191 KTYKIIDIVSAFQSYGEFISGSISEEQRKDVLHHACPGAGACGGMYTANTMASAAEAMGMTLPYSSSIPAESPEKLAECR 270 (596)
T ss_pred cccchhHHHHHHHhhhhhhccccCchHhhhhHhhcCCCCCcccceeehhhHHHHHHHhcCCCCCcccCcCCChHHHHHHH
Confidence 455799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCcccccCHHHHHHHHHHHHhcCCCchhHHhHHHHHHHhCCCCChHHHHHhhCCCCceeeccCCChh
Q 007192 289 LAGKYLLELLRMDLKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVPFLADLKPSGKY 368 (613)
Q Consensus 289 ~aG~~iv~lv~~~i~PrdIlT~~af~NAi~v~~A~GGSTNavLHL~AIA~eagi~ltl~dfd~is~~vP~l~~l~P~G~~ 368 (613)
.+|+.|.++++.||+||||+|++|||||++.+||+|||||+||||+||||.+|++||+|||+++|+.||+|++++|+|+|
T Consensus 271 ~ag~yik~ll~~dikprdi~t~~afenamv~vmalggstnavlhliaia~svg~~ltlddfq~vsd~tpfiad~kpsgky 350 (596)
T KOG2448|consen 271 LAGKYIKELLKMDIKPRDIITPKAFENAMVSVMALGGSTNAVLHLIAIARSVGLELTLDDFQKVSDATPFIADLKPSGKY 350 (596)
T ss_pred HHHHHHHHHHHcCCChhhccCHHHHhhhhhheeeccCcchhHHHHHHHHHhcCceecHHHHhhhccCCcceeccCCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhCCHHHHHHHHHHCCCCCCCCCcccCcCHHHHhccCCCCCCCCCccCCCCCCCCCCCCEEEEeccCCCCCeEE
Q 007192 369 VMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFPHLSEGQDIIRPLSNPIKKTGHIQVLRGNLAPEGSVA 448 (613)
Q Consensus 369 ~m~dl~~aGGvpaVlk~L~~~glL~~d~lTVtGkTl~e~l~~~~~~~~d~~VIrp~~~P~~~~Ggl~vL~GNLAP~GAVv 448 (613)
.|+|||..||+|.|+|+|++.||+|+||+||||+||+|||+.++.....|+||||++||++.+|+|+||||+|||+|+|.
T Consensus 351 vmedl~~iggtpsvlkyl~e~gl~dg~~mtvtg~tlaenl~~~psl~egqeiirplsnpik~~ghlqilrgslap~gsva 430 (596)
T KOG2448|consen 351 VMEDLHKIGGTPSVLKYLLELGLMDGDCMTVTGQTLAENLENVPSLTEGQEIIRPLSNPIKETGHLQILRGSLAPDGSVA 430 (596)
T ss_pred HHHHHHHhcCcHHHHHHHHHcCCccCCeeEEecHHHHHHhhcCCCccccchhhhcccCcccccceEEEEecccCCCCcee
Confidence 99999999999999999999999999999999999999999999887889999999999999999999999999999999
Q ss_pred ccccCCCceEEeeEEEecCHHHHHHHHhCCCCCC-CCeEEEEeCCCCCCCCCCCCCcchHHHHHhCCCCCeeEEEcCCCC
Q 007192 449 KITGKEGLYFSGPALVFEGEESMIAAISEDPMSF-KGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRF 527 (613)
Q Consensus 449 K~sa~~~~~f~GpA~VFdseeda~~aI~~g~I~~-~GdVvVIRyeGPkGgPGMpEml~~t~al~g~Gl~~~VALITDGRf 527 (613)
|++|++...|+|||||||.|++.++|+..|++++ ++.|||||||||||||||||||+|++||+|+|||++|||+|||||
T Consensus 431 kitgkeglyf~g~arvfe~e~~fiaalerge~kkgektvvvir~egpkggpgmpemlkpssaimgaglgkdvalltdgrf 510 (596)
T KOG2448|consen 431 KITGKEGLYFSGPARVFEGEESFIAALERGEPKKGEKTVVVIRGEGPKGGPGMPEMLKPSSAIMGAGLGKDVALLTDGRF 510 (596)
T ss_pred eeeccccceeccceeeeccchHHHHHHhccCcccCceeEEEEEccCCCCCCCCccccCcchhhhccccccceeEeecCcc
Confidence 9999999999999999999999999999999988 256999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceEEecccccCCCCeEEeecCCEEEEecCCCEEEEecCHHHHHHHHhcCCCCCCCCchHHHHHHHHhCCCccC
Q 007192 528 SGGSHGFVVGHVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLTDEEMEERRRKWTPPPNKVNRGVLYKYIKNVQSASN 607 (613)
Q Consensus 528 SGas~G~~IGHVsPEAa~GGpIAlV~dGD~I~IDi~~r~L~l~v~~eeL~~R~~~w~~~~~~~~~G~l~~Y~~~V~sA~~ 607 (613)
||+||||.||||.|||++||||+||||||+|+||+.+++||+.||++|+++||+.|+.|+.+|.||.|.+|+++|++|++
T Consensus 511 sggshgflighi~peaqeggpiglv~dgd~i~ida~kn~idl~vs~kema~rr~~w~app~ky~rgtl~kyaknvs~as~ 590 (596)
T KOG2448|consen 511 SGGSHGFLIGHICPEAQEGGPIGLVKDGDIITIDAGKNRIDLQVSPKEMADRRKKWTAPPYKYNRGTLYKYAKNVSSASD 590 (596)
T ss_pred cCCccceeeeeccchhhcCCceEEeecCCEEEEecCCceeeeeeCHHHHHhhhccccCCCccccchhHHHHHHhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCC
Q 007192 608 GCVTDE 613 (613)
Q Consensus 608 GA~~~~ 613 (613)
|||+|+
T Consensus 591 gcvtd~ 596 (596)
T KOG2448|consen 591 GCVTDE 596 (596)
T ss_pred CcccCC
Confidence 999985
No 14
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=93.05 E-value=0.59 Score=48.17 Aligned_cols=43 Identities=16% Similarity=0.182 Sum_probs=29.9
Q ss_pred CCCCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEec
Q 007192 88 MSKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNT 132 (613)
Q Consensus 88 ~~kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~t 132 (613)
|.||+|||...+......+ ..-+.+.--++|+++||.|+.++.
T Consensus 5 m~~P~Igi~~~~~~~~~~~--~~~~~~~y~~~i~~aGg~pv~lp~ 47 (254)
T PRK11366 5 MNNPVIGVVMCRNRLKGHA--TQTLQEKYLNAIIHAGGLPIALPH 47 (254)
T ss_pred CCCCEEEEeCCCcccCcch--HHHHHHHHHHHHHHCCCEEEEecC
Confidence 6799999985444333322 333666666799999999998874
No 15
>PRK09372 ribonuclease activity regulator protein RraA; Provisional
Probab=89.09 E-value=2.9 Score=40.80 Aligned_cols=99 Identities=18% Similarity=0.256 Sum_probs=62.1
Q ss_pred eEEeeE---EEecCHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCCcchHHHHHhCCCCCeeEEEcCCCCCCC---
Q 007192 457 YFSGPA---LVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGG--- 530 (613)
Q Consensus 457 ~f~GpA---~VFdseeda~~aI~~g~I~~~GdVvVIRyeGPkGgPGMpEml~~t~al~g~Gl~~~VALITDGRfSGa--- 530 (613)
++-||| +++.+.....++|+ ..++ |||+||-.-|..-.-=+=|++.. +.+..|+ .++|+||..-=.
T Consensus 31 ~~~G~A~TV~~~~d~~~~~~~i~--~~~~-GdVlVid~~g~~~~a~~G~~~~~--~a~~~G~---~G~VidG~vRD~~~i 102 (159)
T PRK09372 31 SFGGPITTVKCFEDNGLVKELLE--EPGE-GRVLVVDGGGSLRRALVGDNLAE--LAVDNGW---EGIVVYGCVRDVDEL 102 (159)
T ss_pred EEEEEEEEEEEeCCcHHHHHHHh--cCCC-CeEEEEECCCCcCcEeehHHHHH--HHHHcCC---eEEEecccccCHHHH
Confidence 455666 56666666677776 4588 99999998775433334455433 3455665 678999964321
Q ss_pred -CCCcce--EEecc-------cccCCCCeE----EeecCCEEEEecC
Q 007192 531 -SHGFVV--GHVCP-------EAQDGGPIG----LIQNGDIINIDVQ 563 (613)
Q Consensus 531 -s~G~~I--GHVsP-------EAa~GGpIA----lV~dGD~I~IDi~ 563 (613)
.-|+.| -.++| ....+-||. .|+.||+|.=|.+
T Consensus 103 ~~~~~Pvfa~g~~p~~~~~~~~~~~n~pV~iggv~V~PGD~I~aD~d 149 (159)
T PRK09372 103 AELDIGIQALAAIPVKSDKEGIGERDVPVNFGGVTFFPGDYLYADND 149 (159)
T ss_pred hhCCCCeEEeeecCCCCCCCCccEecccEEECCEEECCCCEEEEcCC
Confidence 112332 33444 233456665 8999999999965
No 16
>TIGR01935 NOT-MenG RraA famliy. This model was initially classified as a "hypothetical equivalog" expressing the tentative hypothesis that all members might have the same function as the E. coli enzyme. Considering the second clade of enterobacterial sequences within this family, that appears to be less tenable. The function of these sequences outside of the narrow RraA equivalog model (TIGR02998) remains obscure. All of these were initially annotated as MenG, AKA S-adenosylmethionine: 2-demethylmenaquinone methyltransferase (EC 2.1.-.-). See the references characterizing this as a case of transitive annotation error in the case of the E. coli protein.
Probab=85.44 E-value=3.5 Score=39.88 Aligned_cols=100 Identities=19% Similarity=0.267 Sum_probs=59.5
Q ss_pred eEEeeE---EEecCHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCCcchHHHHHhCCCCCeeEEEcCCCCCCC---
Q 007192 457 YFSGPA---LVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGG--- 530 (613)
Q Consensus 457 ~f~GpA---~VFdseeda~~aI~~g~I~~~GdVvVIRyeGPkGgPGMpEml~~t~al~g~Gl~~~VALITDGRfSGa--- 530 (613)
++-||| +++.+.....++|+ ..++ |||+||-..|..-.-=+=|++.. +.+..|+ .++|+||+.-=.
T Consensus 27 ~i~G~A~TV~~~~d~~~~~~ai~--~~~~-GdVlVid~~g~~~~a~~G~~~~~--~a~~~G~---~G~VidG~vRD~~~i 98 (150)
T TIGR01935 27 AFAGPIVTVKCFEDNSLVREVLE--QPGA-GRVLVVDGGGSLRCALLGDNLAV--LAEENGW---EGVIVNGCVRDVAEL 98 (150)
T ss_pred EEEEEEEEEEEECCcHHHHHHHh--cCCC-CeEEEEECCCCCceEeehHHHHH--HHHHCCC---EEEEEeecccCHHHH
Confidence 455666 56666666777776 4588 99999997765433233344433 3455665 778999974211
Q ss_pred -CCCcce--EEecccc-------cCCCCeE----EeecCCEEEEecCC
Q 007192 531 -SHGFVV--GHVCPEA-------QDGGPIG----LIQNGDIINIDVQK 564 (613)
Q Consensus 531 -s~G~~I--GHVsPEA-------a~GGpIA----lV~dGD~I~IDi~~ 564 (613)
.-|+.| -.++|-. ..+-||. .|+.||+|.-|.+.
T Consensus 99 ~~~~~Pvfa~g~~p~~~~~~~~~~~nvPV~igGv~V~PGD~IvaD~dG 146 (150)
T TIGR01935 99 AGMDLGVKALAAHPRKTEKRGAGEVDVPVTFAGVTFVPGDYLYADEDG 146 (150)
T ss_pred hhCCCCEEEeeecCCCCCCCcceEecceEEECCEEECCCCEEEEcCCC
Confidence 112222 2222221 2344555 89999999998653
No 17
>PRK12487 ribonuclease activity regulator protein RraA; Reviewed
Probab=85.18 E-value=6.1 Score=38.85 Aligned_cols=108 Identities=18% Similarity=0.266 Sum_probs=66.6
Q ss_pred eEEeeE---EEecCHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCCcchHHHHHhCCCCCeeEEEcCCCCCCC---
Q 007192 457 YFSGPA---LVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGG--- 530 (613)
Q Consensus 457 ~f~GpA---~VFdseeda~~aI~~g~I~~~GdVvVIRyeGPkGgPGMpEml~~t~al~g~Gl~~~VALITDGRfSGa--- 530 (613)
++-||| +++++.....++|+. ..+ |||+||-..|....-=+=|++... .+.+|+ .++|+||..-=.
T Consensus 31 ~~~G~A~TV~~~~d~~~~~~al~~--~~~-GdVlVid~~g~~~~a~~G~~~a~~--a~~~G~---aG~VidG~vRD~~~i 102 (163)
T PRK12487 31 IFWGEIVTVRCFEDNSKVKEVLAQ--DGK-GKVLVVDGGGSCRRALLGDQIAQS--ALDNGW---EGIVINGCVRDVGAL 102 (163)
T ss_pred EEEEEEEEEEeeCCcHHHHHHHhc--CCC-CeEEEEECCCCCCcEeehHHHHHH--HHHCCC---eEEEEeecccCHHHH
Confidence 455666 667766666777765 488 999999887766554555655443 355665 678999964211
Q ss_pred -CCCcce--EEeccc-------ccCCCCe----EEeecCCEEEEecCCCEEEEecCHHHH
Q 007192 531 -SHGFVV--GHVCPE-------AQDGGPI----GLIQNGDIINIDVQKRRIDVQLTDEEM 576 (613)
Q Consensus 531 -s~G~~I--GHVsPE-------Aa~GGpI----AlV~dGD~I~IDi~~r~L~l~v~~eeL 576 (613)
.-|+.| -.++|= ...+.|| ..|+.||+|.-|-+ +-+-+ +++|
T Consensus 103 ~~l~fPVfa~g~~p~~~~~~~~~~~nvPV~iggv~V~PGDiI~aD~d-GVvvi---p~~l 158 (163)
T PRK12487 103 STMDLGVKALGASPIKTEKRGQGEVNVTLTMGNVIIEPGDMLYADEN-GIAVS---KEAL 158 (163)
T ss_pred hhCCCCeEEeecCCCCCCCCCcceecccEEECCEEECCCCEEEEcCC-CEEEE---Cchh
Confidence 112221 222331 2346676 58999999999954 54433 5555
No 18
>PRK08296 hypothetical protein; Provisional
Probab=82.30 E-value=3.1 Score=48.46 Aligned_cols=91 Identities=23% Similarity=0.277 Sum_probs=57.7
Q ss_pred CceEEeeEEEecCHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCCcchHHHHHhCCCCCeeEEEcCCCCCCCCCCc
Q 007192 455 GLYFSGPALVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSHGF 534 (613)
Q Consensus 455 ~~~f~GpA~VFdseeda~~aI~~g~I~~~GdVvVIRyeGPkGgPGMpEml~~t~al~g~Gl~~~VALITDGRfSGas~G~ 534 (613)
.-..+|+++|-.+.+|+. ++++ |+|+|.+.--|. + +..+ .+-.++||+-- +=.||+.
T Consensus 507 ~G~v~G~vrvv~~~~~~~------~~~~-g~ILV~~~tdP~-------~---~~~~-----~~~~GiVte~G-g~~SHaA 563 (603)
T PRK08296 507 PGVVEGPARVIRSADELS------EVQE-GEILVCPVTSPS-------W---APIF-----AKIKATVTDIG-GVMSHAA 563 (603)
T ss_pred CCeEEEEEEEeCCHHHHH------hccC-ceEEEeCCCCHH-------H---HHHH-----HHheEEEEecC-CCcchHH
Confidence 445689999999988762 4678 999999887765 2 2222 12345677631 1123433
Q ss_pred ce---EEeccccc--CCCCeEEeecCCEEEEecCCCEEEEe
Q 007192 535 VV---GHVCPEAQ--DGGPIGLIQNGDIINIDVQKRRIDVQ 570 (613)
Q Consensus 535 ~I---GHVsPEAa--~GGpIAlV~dGD~I~IDi~~r~L~l~ 570 (613)
+| -.| | |. .++..-.++|||.|+||..++.|.++
T Consensus 564 IvARe~GI-P-aVvgv~~at~~l~dG~~V~vDg~~G~V~il 602 (603)
T PRK08296 564 IVCREYGL-P-AVVGTGNATKRIKTGQRLRVDGTKGVVTIL 602 (603)
T ss_pred HHHHHcCC-C-EEEcCccHhhhcCCCCEEEEECCCCEEEEc
Confidence 32 001 1 11 23456789999999999999999873
No 19
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=81.94 E-value=7 Score=43.54 Aligned_cols=88 Identities=22% Similarity=0.428 Sum_probs=69.0
Q ss_pred cCCCCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcc
Q 007192 87 DMSKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSA 166 (613)
Q Consensus 87 d~~kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a 166 (613)
.-+||.||| +.|.--+||= +.+++-.++.|=-.+.|+..+.+. .+.|.+++.
T Consensus 182 ~~~kp~I~i-TmfGvTTp~V-------~~~~~~Le~~G~Ev~VFHAtG~GG--------------------~aME~Li~~ 233 (403)
T PF06792_consen 182 QEDKPLIGI-TMFGVTTPCV-------DAIRERLEEEGYEVLVFHATGTGG--------------------RAMERLIRE 233 (403)
T ss_pred cCCCcEEEE-ECCCCcHHHH-------HHHHHHHHhcCCeEEEEcCCCCch--------------------HHHHHHHHc
Confidence 367999997 5677777884 556777888899999999776532 245999999
Q ss_pred cCCCcEEEc----------cCCCCCchhhHHhhhccCCCeEEEccC
Q 007192 167 QWYDANISI----------PGCDKNMPGTIMAMGRLNRPGIMVYGG 202 (613)
Q Consensus 167 ~~~Dg~V~l----------~gCDK~vPG~lMaaaRlniPsi~v~gG 202 (613)
-.|||++=| +|==.--|.=|-||+|.+||-|+.+|+
T Consensus 234 G~~~~VlDlTttEl~d~l~GGv~sagp~Rl~AA~~~GIP~Vvs~Ga 279 (403)
T PF06792_consen 234 GQFDGVLDLTTTELADELFGGVLSAGPDRLEAAARAGIPQVVSPGA 279 (403)
T ss_pred CCcEEEEECcHHHHHHHHhCCCCCCCchHHHHHHHcCCCEEEecCc
Confidence 999999843 454445677899999999999999985
No 20
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=81.49 E-value=20 Score=39.94 Aligned_cols=122 Identities=15% Similarity=0.136 Sum_probs=82.7
Q ss_pred CCCCCC-chhhHHHHHhCCCCcCc-CCCCeEEEEecCCCcccccc------chHHHHHHHHHHHHHcCCceeEEeccccC
Q 007192 65 VTEPKS-QGGSQAILHGVGLSEAD-MSKPQVGISSVWYEGNTCNM------HLLRLSEAVKRGVEEAGMVGFRFNTIGVS 136 (613)
Q Consensus 65 ~~~g~~-~a~~ra~l~a~G~~ded-~~kP~IgI~ns~~e~~Pch~------hl~~la~~Vk~gI~~aGG~p~ef~tiav~ 136 (613)
+.+|.. .+.+-++|.+.|++.=. ++||.|||.+|-+|+..... =.+.-...++.-+++.|+....+.+ +.
T Consensus 166 l~~G~~l~p~~i~~Las~G~~~V~V~~~prV~IisTGdEl~~~g~~~~~g~i~dsN~~~L~a~l~~~G~~v~~~~~--v~ 243 (419)
T PRK14690 166 LPAGRRLTPADLALLSAVGLTRVSVRRPLRVAVLSTGDELVEPGALAEVGQIYDANRPMLLALARRWGHAPVDLGR--VG 243 (419)
T ss_pred ECCCCCCCHHHHHHHHhCCCCeeEeecCCEEEEEEccccccCCCCCCCCCeEEeCHHHHHHHHHHHCCCEEEEEee--eC
Confidence 444443 57899999999998655 57999999999999985322 2234455777778889977655443 22
Q ss_pred cccccCccCceecccchHHHHHHHHHHHcccCCCcEEEccCCCCC----chhhHHhhhccCCCeEEEccCCCCCccc
Q 007192 137 DAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDANISIPGCDKN----MPGTIMAMGRLNRPGIMVYGGTIKPGHF 209 (613)
Q Consensus 137 Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~Dg~V~l~gCDK~----vPG~lMaaaRlniPsi~v~gGpm~~G~~ 209 (613)
| .++.|.+.++..+ ...|-+|.-+|--.. +|-.| .+++ .+.+.+=+|.||+.
T Consensus 244 D--------------d~~~i~~~l~~a~--~~~DlIItTGG~S~G~~D~v~~~l---~~~G--~~~~~~v~mkPGkp 299 (419)
T PRK14690 244 D--------------DRAALAARLDRAA--AEADVILTSGGASAGDEDHVSALL---REAG--AMQSWRIALKPGRP 299 (419)
T ss_pred C--------------CHHHHHHHHHHhC--ccCCEEEEcCCccCCCcchHHHHH---HhcC--CEEEcceeecCCCc
Confidence 3 4788888888875 468988877765332 33332 3455 24557888999853
No 21
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=79.18 E-value=25 Score=39.23 Aligned_cols=126 Identities=22% Similarity=0.222 Sum_probs=90.5
Q ss_pred cCCCCCC-chhhHHHHHhCCCCcCc-CCCCeEEEEecCCCccccccchH------HHHHHHHHHHHHcCCceeEEecccc
Q 007192 64 RVTEPKS-QGGSQAILHGVGLSEAD-MSKPQVGISSVWYEGNTCNMHLL------RLSEAVKRGVEEAGMVGFRFNTIGV 135 (613)
Q Consensus 64 ~~~~g~~-~a~~ra~l~a~G~~ded-~~kP~IgI~ns~~e~~Pch~hl~------~la~~Vk~gI~~aGG~p~ef~tiav 135 (613)
-+..|.. ...+-++|.+.|+..=. ++||.|||.+|-+|+.+....|. .=.--+..-++++|+.+..++...
T Consensus 148 il~~G~~L~p~~i~llas~Gi~~V~V~rkprV~IisTGdELv~~~~~l~~gqI~dsN~~~l~a~l~~~G~e~~~~giv~- 226 (404)
T COG0303 148 ILRAGTRLTPAEIALLASLGIAEVKVYRKPRVAIISTGDELVEPGQPLEPGQIYDSNSYMLAALLERAGGEVVDLGIVP- 226 (404)
T ss_pred eecCCCCcCHHHHHHHHhCCCceEEEecCCEEEEEecCccccCCCCCCCCCeEEecCHHHHHHHHHHcCCceeeccccC-
Confidence 3444433 56789999999997755 67899999999999999885554 122346677789999887665432
Q ss_pred CcccccCccCceecccchHHHHHHHHHHHcccCCCcEEEccCCCCCchhhHHhhhc--cCCCeEEEccCCCCCccc
Q 007192 136 SDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDANISIPGCDKNMPGTIMAMGR--LNRPGIMVYGGTIKPGHF 209 (613)
Q Consensus 136 ~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~Dg~V~l~gCDK~vPG~lMaaaR--lniPsi~v~gGpm~~G~~ 209 (613)
| ..+-+...+|..++. +|-+|..+|-.----=++=.+.+ ++ .|.+.|=.|.||+.
T Consensus 227 -D--------------d~~~l~~~i~~a~~~--~DviItsGG~SvG~~D~v~~~l~~~lG--~v~~~gia~kPGkP 283 (404)
T COG0303 227 -D--------------DPEALREAIEKALSE--ADVIITSGGVSVGDADYVKAALERELG--EVLFHGVAMKPGKP 283 (404)
T ss_pred -C--------------CHHHHHHHHHHhhhc--CCEEEEeCCccCcchHhHHHHHHhcCC--cEEEEeeeecCCCc
Confidence 2 256666666766555 89999999876655445555554 66 88888889999864
No 22
>TIGR02798 ligK_PcmE 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase. Members of this protein family 4-carboxy-4-hydroxy-2-oxoadipate aldolase, also called 4-oxalocitramalate aldolase. This enzyme of the protocatechuate 4,5-cleavage pathway converts its substrate to pyruvate plus oxaloacetate. Protocatechuate is an intermediate in many pathways for degrading aromatic compounds, including lignin, fluorene, etc. Hara, et al. showed the LigK gene was not only a 4-carboxy-4-hydroxy-2-oxoadipate aldolase but also the enzyme of the following step, oxaloacetate decarboxylase.
Probab=78.97 E-value=13 Score=38.10 Aligned_cols=104 Identities=20% Similarity=0.228 Sum_probs=60.4
Q ss_pred eEEeeE---EEec-CHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCCcchHHHHHhCCCCCeeEEEcCCCCCCC--
Q 007192 457 YFSGPA---LVFE-GEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGG-- 530 (613)
Q Consensus 457 ~f~GpA---~VFd-seeda~~aI~~g~I~~~GdVvVIRyeGPkGgPGMpEml~~t~al~g~Gl~~~VALITDGRfSGa-- 530 (613)
++-||| +++. +.....++|+ .+++ ||||||-..|..-.-=+=|++ +.+.+..|+ .++|+||..-=.
T Consensus 48 ki~G~A~TV~~~~~d~~~~~~ai~--~~~p-GdVlVid~~g~~~~a~~G~~~--a~~a~~~G~---~GiVidG~vRD~~~ 119 (222)
T TIGR02798 48 RVCGTAVTVLLQPGDNWMMHVAAE--QIQE-GDVVVAACTAECEDGYFGDLL--ATSFQARGC---RGLIIDAGVRDVRD 119 (222)
T ss_pred EEEEEEEEEEeecCCchHHHHHHH--hCCC-CeEEEEECCCCcceEeehHHH--HHHHHHCCC---eEEEEecccCCHHH
Confidence 355777 5553 3334456666 4689 999999977764221223433 334456775 778999964210
Q ss_pred --CCCcce--EEecc-------cccCCCCe----EEeecCCEEEEecCCCEEEE
Q 007192 531 --SHGFVV--GHVCP-------EAQDGGPI----GLIQNGDIINIDVQKRRIDV 569 (613)
Q Consensus 531 --s~G~~I--GHVsP-------EAa~GGpI----AlV~dGD~I~IDi~~r~L~l 569 (613)
.-|+.| -.++| -...+.|| ..|+.||+|.=|- ++-+-+
T Consensus 120 i~~l~~Pvfa~g~~p~~~~~~~~~~~nvpv~iggv~V~PGD~i~aD~-dGVvvi 172 (222)
T TIGR02798 120 LTEMNFPVWSKAIHAKGTVKATLGSVNIPVVCANALVNPGDVVVADD-DGVVVV 172 (222)
T ss_pred HhhCCCceEEeecCCCCCCCCCccccCCCEEECCEEECCCCEEEEcC-CcEEEE
Confidence 112221 22222 12456777 5899999999994 455544
No 23
>PRK06241 phosphoenolpyruvate synthase; Validated
Probab=78.57 E-value=2.1 Score=51.60 Aligned_cols=93 Identities=23% Similarity=0.299 Sum_probs=58.4
Q ss_pred cCCCceEEeeEEEecCHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCCcchHHHHHhCCCCCeeEEEcCCCCCCC-
Q 007192 452 GKEGLYFSGPALVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGG- 530 (613)
Q Consensus 452 a~~~~~f~GpA~VFdseeda~~aI~~g~I~~~GdVvVIRyeGPkGgPGMpEml~~t~al~g~Gl~~~VALITDGRfSGa- 530 (613)
+...-..+|+++|-.+.+++ ++++ |+|||+++-=|.. +..+.. --++||+ .|+
T Consensus 772 ~~~~G~v~G~v~v~~~~~~~-------~~~~-g~ILV~~~~~p~~----------~~~~~~-----~~giv~~---~Gg~ 825 (871)
T PRK06241 772 PVSSGVVEGRARVILNPEDA-------DLEK-GDILVTAFTDPGW----------TPLFVS-----IKGLVTE---VGGL 825 (871)
T ss_pred ecCCCeEEEEEEEECCHHHc-------CCCC-CeEEEecCCCHHH----------HHHHHh-----ceEEEEc---CCCc
Confidence 34455679999999998873 6788 9999999987731 111211 1456776 232
Q ss_pred -CCCcceE--Eecccc-cCCCCeEEeecCCEEEEecCCCEEEEe
Q 007192 531 -SHGFVVG--HVCPEA-QDGGPIGLIQNGDIINIDVQKRRIDVQ 570 (613)
Q Consensus 531 -s~G~~IG--HVsPEA-a~GGpIAlV~dGD~I~IDi~~r~L~l~ 570 (613)
||+.+|. .==|-- -.++..-.++|||.|+||..++.|.+.
T Consensus 826 ~sH~aIvare~gIPavv~~~~~~~~l~~G~~v~lDg~~G~v~il 869 (871)
T PRK06241 826 MTHGAVIAREYGIPAVVGVENATKLIKDGQRIRVDGTEGYVEIL 869 (871)
T ss_pred chHHHHHHHhcCCCEEEccccHHhhcCCCCEEEEECCCCEEEEc
Confidence 3432221 000100 123446689999999999999999873
No 24
>TIGR02998 RraA_entero regulator of ribonuclease activity A. THIS PROTEIN IS _NOT_ MenG, AKA S-adenosylmethionine: 2-demethylmenaquinone methyltransferase (EC 2.1.-.-). See the references characterizing this as a case of transitive annotation error .
Probab=78.21 E-value=17 Score=35.72 Aligned_cols=100 Identities=17% Similarity=0.196 Sum_probs=61.2
Q ss_pred eEEeeE---EEecCHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCCcchHHHHHhCCCCCeeEEEcCCCCCCC---
Q 007192 457 YFSGPA---LVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGG--- 530 (613)
Q Consensus 457 ~f~GpA---~VFdseeda~~aI~~g~I~~~GdVvVIRyeGPkGgPGMpEml~~t~al~g~Gl~~~VALITDGRfSGa--- 530 (613)
+|-||| ++|.+.....++|+. .++ |||+||-..|....-=|=|++.. +.+.+|+ .++|+||..-=.
T Consensus 31 ~~~G~A~TV~~~~d~~~~~~aid~--~~p-GdVlVid~~g~~~~A~~G~~la~--~a~~~G~---aGvVidG~vRD~~~i 102 (161)
T TIGR02998 31 SFGGKVVTVKCFEHNGLINELLEQ--NGT-GRVLVIDGGGSTRRALIDAELAQ--LAANNGW---EGIVVYGAVRQVDAL 102 (161)
T ss_pred EEEEEEEEEEeeCCcHHHHHHHhc--cCC-CeEEEEECCCCCceEeeCHHHHH--HHHHCCC---eEEEEeecccCHHHH
Confidence 355666 777777777788775 488 99999998888754445566543 3455675 678999853110
Q ss_pred -CCCcce--EEeccc-------ccCCCCeE----EeecCCEEEEecCC
Q 007192 531 -SHGFVV--GHVCPE-------AQDGGPIG----LIQNGDIINIDVQK 564 (613)
Q Consensus 531 -s~G~~I--GHVsPE-------Aa~GGpIA----lV~dGD~I~IDi~~ 564 (613)
.-|+.| --++|= ...+-||. .|+.||+|.=|.+.
T Consensus 103 ~~l~~PVfa~g~~p~~~~~~~~g~~nvpV~iggv~V~PGD~IvaD~DG 150 (161)
T TIGR02998 103 EELDIGIQALAAIPVGADEQGIGESDIAVNFAGVTFFPDDYIYADNTG 150 (161)
T ss_pred hhCCCCcEEeeccCCCCCCCCcceeCCCEEECCEEECCCCEEEEcCCc
Confidence 111111 111111 12334444 59999999999765
No 25
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=77.82 E-value=31 Score=38.41 Aligned_cols=115 Identities=21% Similarity=0.179 Sum_probs=80.6
Q ss_pred chhhHHHHHhCCCCcCc-CCCCeEEEEecCCCccccccch------HHHHHHHHHHHHHcCCceeEEeccccCcccccCc
Q 007192 71 QGGSQAILHGVGLSEAD-MSKPQVGISSVWYEGNTCNMHL------LRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGT 143 (613)
Q Consensus 71 ~a~~ra~l~a~G~~ded-~~kP~IgI~ns~~e~~Pch~hl------~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~ 143 (613)
.+.+-++|.+.|++.=. ++||.|+|.+|-+|+.+....+ +.-.-.++.-+++.|+....+... .|
T Consensus 157 ~p~~i~lLas~G~~~V~V~~~prV~iistGdEl~~~~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v--~D------ 228 (411)
T PRK10680 157 TTAELPVLASLGIAEVPVVRKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGII--RD------ 228 (411)
T ss_pred CHHHHHHHHhCCCCeEEecCCCEEEEEccCCeEeCCCCCCCCCEEEEhHHHHHHHHHHHCCCEEEEEEEe--CC------
Confidence 57899999999998665 4799999999999998554332 223345777788899876665543 34
Q ss_pred cCceecccchHHHHHHHHHHHcccCCCcEEEccCCCC----CchhhHHhhhccCCCeEEEccCCCCCcc
Q 007192 144 KGMCFSLQSRDLIADSIETVMSAQWYDANISIPGCDK----NMPGTIMAMGRLNRPGIMVYGGTIKPGH 208 (613)
Q Consensus 144 ~GM~ysL~sRelIAdsiE~~~~a~~~Dg~V~l~gCDK----~vPG~lMaaaRlniPsi~v~gGpm~~G~ 208 (613)
+.|.|+..++.. ...+|-+|..+|--. .+|-.+. +++ .++..|=+|.||.
T Consensus 229 --------d~~~i~~~l~~a--~~~~DlvIttGG~S~G~~D~~~~al~---~lG--~~~f~~v~~kPGk 282 (411)
T PRK10680 229 --------DPHALRAAFIEA--DSQADVVISSGGVSVGEADYTKTILE---ELG--EIAFWKLAIKPGK 282 (411)
T ss_pred --------CHHHHHHHHHHh--ccCCCEEEEcCCCCCCCcchHHHHHH---hcC--cEEEEEEEEecCc
Confidence 367788777765 366899999888653 2454443 445 4555666788875
No 26
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=76.64 E-value=18 Score=38.85 Aligned_cols=112 Identities=20% Similarity=0.235 Sum_probs=81.3
Q ss_pred HHHHHhCCCCc-CcCCCCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccch
Q 007192 75 QAILHGVGLSE-ADMSKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSR 153 (613)
Q Consensus 75 ra~l~a~G~~d-ed~~kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sR 153 (613)
.+++.+.|+.. .-+++|.|+|++|-+|+.++.. .+.-...+++-+++.|.......++ .| ++
T Consensus 143 ~~~~~~~gi~~V~v~r~~rv~II~TG~Ev~~G~i-~D~~~~~l~~~L~~~G~~v~~~~iv--~D--------------d~ 205 (312)
T cd03522 143 EALARDGPLLRVAPFRPLRVGLIVTGSEVYGGRI-EDKFGPVLRARLAALGVELVEQVIV--PH--------------DE 205 (312)
T ss_pred HHHHHhCCCcEEEecCCCEEEEEEcCCcCCCCcE-EEhHHHHHHHHHHHCCCEEEEEEEc--CC--------------CH
Confidence 45566677654 4578999999999999998886 6777778888899999775544332 33 48
Q ss_pred HHHHHHHHHHHcccCCCcEEEccCC----CCCchhhHHhhhccCCCeEEEccCCCCCcc
Q 007192 154 DLIADSIETVMSAQWYDANISIPGC----DKNMPGTIMAMGRLNRPGIMVYGGTIKPGH 208 (613)
Q Consensus 154 elIAdsiE~~~~a~~~Dg~V~l~gC----DK~vPG~lMaaaRlniPsi~v~gGpm~~G~ 208 (613)
+.|+..++..++. ..|-+|+-+|= |..+|..+..+. ..++.+|=||.||.
T Consensus 206 ~~I~~ai~~~~~~-g~DlIItTGGtsvg~~D~tp~Ai~~~G----~ei~~~Gv~v~PG~ 259 (312)
T cd03522 206 AAIAAAIAEALEA-GAELLILTGGASVDPDDVTPAAIRAAG----GEVIRYGMPVDPGN 259 (312)
T ss_pred HHHHHHHHHHhcC-CCCEEEEeCCcccCCcchHHHHHHhcC----ceEEEeeecccCCc
Confidence 8999999888643 57877777653 445666655542 35777888888885
No 27
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=73.05 E-value=17 Score=38.04 Aligned_cols=96 Identities=19% Similarity=0.120 Sum_probs=60.0
Q ss_pred CCCCeEEEEecCCCccc--cccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHc
Q 007192 88 MSKPQVGISSVWYEGNT--CNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMS 165 (613)
Q Consensus 88 ~~kP~IgI~ns~~e~~P--ch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~ 165 (613)
+.||+|||......-.. -..+..-+...--++|.+|||+|+-.+ ...| ++.+..-
T Consensus 1 ~~kpvIGIt~~~~~~~~~~~~~~~~~~~~~yv~ai~~aGg~pillP--~~~d---------------~~~~~~~------ 57 (243)
T COG2071 1 MSKPVIGITADLIQEIVGFDGNPWSYLPYDYVDAIIKAGGIPILLP--ALED---------------PEDARQY------ 57 (243)
T ss_pred CCCCEEEEecchhccccccCCccHHHHHHHHHHHHHHcCCceEEec--CCCC---------------HHHHHHH------
Confidence 57999999876544211 122233344444455666999998877 4444 2223222
Q ss_pred ccCCCcEEEccCCCCCch-----------------------hhHHhhhccCCCeEEEccCCCCCc
Q 007192 166 AQWYDANISIPGCDKNMP-----------------------GTIMAMGRLNRPGIMVYGGTIKPG 207 (613)
Q Consensus 166 a~~~Dg~V~l~gCDK~vP-----------------------G~lMaaaRlniPsi~v~gGpm~~G 207 (613)
-+..||+|+-+| -..-| +++=+|+..++|.+=+.-|.++=.
T Consensus 58 l~~iDgliltGg-~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~iPILgICRG~QllN 121 (243)
T COG2071 58 LDLIDGLILTGG-SNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIPILGICRGLQLLN 121 (243)
T ss_pred HhhccEEEecCC-CcCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcCCCEEEEccchHHHH
Confidence 245799999999 22222 567788889999888887765533
No 28
>PRK09262 hypothetical protein; Provisional
Probab=72.99 E-value=17 Score=37.37 Aligned_cols=103 Identities=21% Similarity=0.265 Sum_probs=59.1
Q ss_pred eEEeeE---EEec-CHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCCcchHHHHHhCCCCCeeEEEcCCCCC----
Q 007192 457 YFSGPA---LVFE-GEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFS---- 528 (613)
Q Consensus 457 ~f~GpA---~VFd-seeda~~aI~~g~I~~~GdVvVIRyeGPkGgPGMpEml~~t~al~g~Gl~~~VALITDGRfS---- 528 (613)
++-||| +++. +.--.+++|+ .++| ||||||-..|+.-.-=+=|++. .+.+..|+ .++|+||..-
T Consensus 50 ~~~G~A~TV~~~~~d~~~~~~ai~--~~~p-GdVlVid~~g~~~~a~~Ge~~a--~~a~~~G~---~GiVidG~vRD~~~ 121 (225)
T PRK09262 50 RIAGTAVTVLVQPGDNWMMHVAVE--QCQP-GDVLVVAPTSPCTDGFFGDLLA--TSLQARGV---RGLVIDAGVRDVRT 121 (225)
T ss_pred eEEEEEEEEEeecCCcHHHHHHHH--ccCC-CCEEEEECCCCCceeeehHHHH--HHHHHCCC---eEEEEeceeCCHHH
Confidence 455666 3332 2223455666 4579 9999999877653222334443 34456675 6789999632
Q ss_pred -------CCCCCcc-eE--EecccccCCCCeE----EeecCCEEEEecCCCEEEE
Q 007192 529 -------GGSHGFV-VG--HVCPEAQDGGPIG----LIQNGDIINIDVQKRRIDV 569 (613)
Q Consensus 529 -------Gas~G~~-IG--HVsPEAa~GGpIA----lV~dGD~I~IDi~~r~L~l 569 (613)
=.++|++ .+ |..|. ..+.||. .|+.||+|.=|-+ +-+-+
T Consensus 122 i~~l~~Pvfa~g~~p~~~~~~~~~-~~nvpV~iggv~V~PGD~IvaD~d-GVvvI 174 (225)
T PRK09262 122 LTEMGFPVWSRAISAQGTVKATLG-SVNVPVVCAGALVNPGDVVVADDD-GVVVV 174 (225)
T ss_pred HhhCCCceEEeecCCCCCCCCCcc-eecccEEECCEEECCCCEEEEECC-cEEEE
Confidence 1122222 12 22233 3456664 7999999999954 55543
No 29
>PRK14497 putative molybdopterin biosynthesis protein MoeA/unknown domain fusion protein; Provisional
Probab=72.51 E-value=53 Score=38.15 Aligned_cols=115 Identities=23% Similarity=0.230 Sum_probs=78.7
Q ss_pred chhhHHHHHhCCCCcCc-CCCCeEEEEecCCCccccccch------HHHHHHHHHHHHHcCCceeEEeccccCcccccCc
Q 007192 71 QGGSQAILHGVGLSEAD-MSKPQVGISSVWYEGNTCNMHL------LRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGT 143 (613)
Q Consensus 71 ~a~~ra~l~a~G~~ded-~~kP~IgI~ns~~e~~Pch~hl------~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~ 143 (613)
.+.+-++|.+.|+..=. ++||.|+|.+|-+|+.+....+ +--.-.++.-+++.|+.+...++. .|
T Consensus 159 ~p~~IglLas~Gi~~V~V~~rprV~IisTGdELv~pg~~l~~G~I~dsNs~~L~a~l~~~G~~v~~~~iv--~D------ 230 (546)
T PRK14497 159 SHEKIGLLASLGISSVKVYEKPKIYLIATGDELVEPGNSLSPGKIYESNLHYLYSKLKSEGYKIVGLSLL--SD------ 230 (546)
T ss_pred CHHHHHHHHhCCCCEEeeccCCEEEEEEcCCcccCCCCCCCCCcEEEhHHHHHHHHHHHCCCEEEEEEEe--CC------
Confidence 56788999999998655 5799999999999998543222 222335667788899886554442 45
Q ss_pred cCceecccchHHHHHHHHHHHcccCCCcEEEccCC-----CCCchhhHHhhhccCCCeEEEccCCCCCccc
Q 007192 144 KGMCFSLQSRDLIADSIETVMSAQWYDANISIPGC-----DKNMPGTIMAMGRLNRPGIMVYGGTIKPGHF 209 (613)
Q Consensus 144 ~GM~ysL~sRelIAdsiE~~~~a~~~Dg~V~l~gC-----DK~vPG~lMaaaRlniPsi~v~gGpm~~G~~ 209 (613)
..|.|...++..++ ..|-+|..+|- |-+ +- +..+++ .+++.|=.|.||+.
T Consensus 231 --------d~e~i~~~l~~al~--~~DlVIttGGtS~G~~D~~-~~---al~~lG--~v~f~GV~ikPGKP 285 (546)
T PRK14497 231 --------DKESIKNEIKRAIS--VADVLILTGGTSAGEKDFV-HQ---AIRELG--NIIVHGLKIKPGKP 285 (546)
T ss_pred --------CHHHHHHHHHHhhh--cCCEEEEcCCccCCCCccH-HH---HHhhcC--cEEEcceeecCCCc
Confidence 36777777777654 58988888887 322 22 233445 57777778888853
No 30
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=69.04 E-value=51 Score=38.44 Aligned_cols=122 Identities=19% Similarity=0.241 Sum_probs=84.2
Q ss_pred CCCCCC-chhhHHHHHhCCCCcCc-CCCCeEEEEecCCCccccccch------HHHHHHHHHHHHHcCCceeEEeccccC
Q 007192 65 VTEPKS-QGGSQAILHGVGLSEAD-MSKPQVGISSVWYEGNTCNMHL------LRLSEAVKRGVEEAGMVGFRFNTIGVS 136 (613)
Q Consensus 65 ~~~g~~-~a~~ra~l~a~G~~ded-~~kP~IgI~ns~~e~~Pch~hl------~~la~~Vk~gI~~aGG~p~ef~tiav~ 136 (613)
+.+|.. .+.+-++|.++|++.=. ++||.|+|.+|-+|+......+ +.-.-.++.-+++.|+.+..++++ .
T Consensus 340 l~~G~~i~p~~i~lLAs~Gi~~V~V~~~prV~IistGdEl~~~g~~~~~g~i~dsn~~~L~~~l~~~G~~v~~~~~v--~ 417 (597)
T PRK14491 340 LAAGTRLSAPEQGLLASLGFAEVPVFRRPKVAVFSTGDEVQAPGETLKPNCIYDSNRFTIKAMAKKLGCEVIDLGII--E 417 (597)
T ss_pred ECCcCCCCHHHHHHHHHCCCCeEEeccCCEEEEEecCCeeccCCCcCCCCcEEeCCHHHHHHHHHHCCCEEEEEEEe--C
Confidence 334433 56889999999998766 4699999999999998543322 222334667788899887666542 3
Q ss_pred cccccCccCceecccchHHHHHHHHHHHcccCCCcEEEccCCCCC----chhhHHhhhccCCCeEEEccCCCCCccc
Q 007192 137 DAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDANISIPGCDKN----MPGTIMAMGRLNRPGIMVYGGTIKPGHF 209 (613)
Q Consensus 137 Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~Dg~V~l~gCDK~----vPG~lMaaaRlniPsi~v~gGpm~~G~~ 209 (613)
| .++.|...++..++ ..|-+|..+|--.. +|-.+ .+++ .++..+=.|.||..
T Consensus 418 D--------------d~~~i~~~l~~a~~--~~DlIIttGG~s~G~~D~~~~al---~~lG--~i~f~~v~~kPGkp 473 (597)
T PRK14491 418 D--------------SEAALEATLEQAAA--QADVVISSGGVSVGDADYIKTAL---AKLG--QIDFWRINMRPGRP 473 (597)
T ss_pred C--------------CHHHHHHHHHHhhh--cCCEEEEcCCccCCCcccHHHHH---HhcC--cEEEEEEEeecCCc
Confidence 3 47888888888763 68999998775332 44333 3455 56778888888853
No 31
>PRK02399 hypothetical protein; Provisional
Probab=68.30 E-value=18 Score=40.38 Aligned_cols=88 Identities=18% Similarity=0.365 Sum_probs=66.4
Q ss_pred cCCCCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcc
Q 007192 87 DMSKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSA 166 (613)
Q Consensus 87 d~~kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a 166 (613)
.-+||.||| +.|.--+|| .+.+|+..++.|=-++.|+..+.+. -+.|.+++.
T Consensus 183 ~~~kp~Ig~-TmfGvTtp~-------v~~~~~~Le~~GyEvlVFHATG~GG--------------------raME~Li~~ 234 (406)
T PRK02399 183 SDDKPLIGL-TMFGVTTPC-------VQAAREELEARGYEVLVFHATGTGG--------------------RAMEKLIDS 234 (406)
T ss_pred CCCCceEEE-ecCCCcHHH-------HHHHHHHHHhCCCeEEEEcCCCCch--------------------HHHHHHHHc
Confidence 447999997 456666677 5667888899998999999877642 134999999
Q ss_pred cCCCcEEEc----------cCCCCCchhhHHhhhccCCCeEEEccC
Q 007192 167 QWYDANISI----------PGCDKNMPGTIMAMGRLNRPGIMVYGG 202 (613)
Q Consensus 167 ~~~Dg~V~l----------~gCDK~vPG~lMaaaRlniPsi~v~gG 202 (613)
..|||++=| +|==---|.=|.||+|.+||.|+.+|+
T Consensus 235 G~~~gVlDlTttEv~d~l~GGv~sagp~Rl~Aa~~~gIP~Vvs~Ga 280 (406)
T PRK02399 235 GLIAGVLDLTTTEVCDELFGGVLAAGPDRLEAAARTGIPQVVSPGA 280 (406)
T ss_pred CCceEEEEcchHHHHHHHhCcCccCCccHHHHHHHcCCCEEecCCc
Confidence 999999844 331112466899999999999987765
No 32
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=66.81 E-value=50 Score=36.29 Aligned_cols=90 Identities=19% Similarity=0.193 Sum_probs=62.3
Q ss_pred chhhHHHHHhCCCCcCc-CCCCeEEEEecCCCcccccc------chHHHHHHHHHHHHHcCCceeEEeccccCcccccCc
Q 007192 71 QGGSQAILHGVGLSEAD-MSKPQVGISSVWYEGNTCNM------HLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGT 143 (613)
Q Consensus 71 ~a~~ra~l~a~G~~ded-~~kP~IgI~ns~~e~~Pch~------hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~ 143 (613)
.+.+-++|.+.|+..=. ++||.|+|.+|-+|+.+... -.+.-.-.++.-+++.|.......+ +.|
T Consensus 148 ~p~~i~~Las~Gi~~v~V~~~~rv~ii~tGdEl~~~g~~~~~g~i~dsn~~~l~~~l~~~G~~~~~~~~--v~D------ 219 (394)
T cd00887 148 TPADIGLLASLGIAEVPVYRRPRVAIISTGDELVEPGEPLAPGQIYDSNSYMLAALLRELGAEVVDLGI--VPD------ 219 (394)
T ss_pred CHHHHHHHHhCCCCEEEEecCCEEEEEeCCCcccCCCCCCCCCEEEEChHHHHHHHHHHCCCEEEEece--eCC------
Confidence 57889999999998765 47999999999999984321 1233444566667778876544433 234
Q ss_pred cCceecccchHHHHHHHHHHHcccCCCcEEEccCC
Q 007192 144 KGMCFSLQSRDLIADSIETVMSAQWYDANISIPGC 178 (613)
Q Consensus 144 ~GM~ysL~sRelIAdsiE~~~~a~~~Dg~V~l~gC 178 (613)
..+.|.+.++.+++. .|-+|..+|-
T Consensus 220 --------d~~~i~~~l~~a~~~--~DliittGG~ 244 (394)
T cd00887 220 --------DPEALREALEEALEE--ADVVITSGGV 244 (394)
T ss_pred --------CHHHHHHHHHHHhhC--CCEEEEeCCC
Confidence 368888888887643 7766665554
No 33
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=66.01 E-value=72 Score=37.82 Aligned_cols=119 Identities=13% Similarity=0.095 Sum_probs=81.0
Q ss_pred chhhHHHHHhCCCCcCc-CCCCeEEEEecCCCccccc-------cchHHHHHHHHHHHHHcCCceeEEeccccCcccccC
Q 007192 71 QGGSQAILHGVGLSEAD-MSKPQVGISSVWYEGNTCN-------MHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMG 142 (613)
Q Consensus 71 ~a~~ra~l~a~G~~ded-~~kP~IgI~ns~~e~~Pch-------~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g 142 (613)
.+.+-++|.+.|+..=. ++||.|+|.+|-+|+.+.- .-.+.-.-.+++-+++.|+....+.++ .|
T Consensus 161 ~p~~i~lLas~Gi~~V~V~~kprV~visTGdELv~~g~~~~~~g~i~dsN~~~L~a~l~~~G~~v~~~~iv--~D----- 233 (659)
T PLN02699 161 GASEIGLLATVGVTMVKVYPRPTVAILSTGDELVEPTTGTLGRGQIRDSNRAMLLAAAIQQQCKVVDLGIA--RD----- 233 (659)
T ss_pred CHHHHHHHHHCCCCeEEeecCCeEEEEeCCcccccCCCCCCCCCcEEeChHHHHHHHHHHCCCEEEEEEEe--CC-----
Confidence 57889999999998655 4799999999999997321 112333456777788899876665543 34
Q ss_pred ccCceecccchHHHHHHHHHHHcccCCCcEEEccCCCCCchhhHHh-hhccCCCeEEEccCCCCCcc
Q 007192 143 TKGMCFSLQSRDLIADSIETVMSAQWYDANISIPGCDKNMPGTIMA-MGRLNRPGIMVYGGTIKPGH 208 (613)
Q Consensus 143 ~~GM~ysL~sRelIAdsiE~~~~a~~~Dg~V~l~gCDK~vPG~lMa-aaRlniPsi~v~gGpm~~G~ 208 (613)
+.+.|.+.++..++ ...|-+|..+|--..-.=.+-- +.+++ .+++.+=+|.||.
T Consensus 234 ---------d~~~i~~~l~~a~~-~~~DlvItTGGts~G~~D~v~~~l~~~G--~i~f~gv~~kPGk 288 (659)
T PLN02699 234 ---------DEEELERILDEAIS-SGVDILLTSGGVSMGDRDFVKPLLEKRG--TVYFSKVLMKPGK 288 (659)
T ss_pred ---------CHHHHHHHHHHhhc-CCCCEEEECCCCCCCCCccHHHHHHhcC--cceEEEEEecCCC
Confidence 47888888887654 4579888888765422222211 23444 5666777888885
No 34
>PRK06201 hypothetical protein; Validated
Probab=65.85 E-value=33 Score=35.00 Aligned_cols=103 Identities=18% Similarity=0.240 Sum_probs=59.2
Q ss_pred eEEeeE---EEec-CHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCCcchHHHHHhCCCCCeeEEEcCCCC-----
Q 007192 457 YFSGPA---LVFE-GEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRF----- 527 (613)
Q Consensus 457 ~f~GpA---~VFd-seeda~~aI~~g~I~~~GdVvVIRyeGPkGgPGMpEml~~t~al~g~Gl~~~VALITDGRf----- 527 (613)
++-||| +++. +.....++|+. +.+ ||||||-..|+...-=+=|++ +.+.+..|+ .++|+||..
T Consensus 52 ~~~G~A~Tv~~~~~d~~~~~~ai~~--~~p-G~VlVid~~g~~~~a~~G~~~--a~~a~~~G~---~G~VidG~vRD~~~ 123 (221)
T PRK06201 52 RLAGTALTVRTRPGDNLMIHRALDL--ARP-GDVIVVDGGGDLTNALVGEIM--LAIAARRGV---AGVVIDGAVRDVAA 123 (221)
T ss_pred EEEEEEEEEEeeCCCcHHHHHHHhc--cCC-CcEEEEECCCCCCccchhHHH--HHHHHHCCC---eEEEEeeccCCHHH
Confidence 355666 3444 33445567764 678 999999887776332233443 334456675 778999962
Q ss_pred ------CCCCCCcceEEeccc--ccCCCCeE----EeecCCEEEEecCCCEEE
Q 007192 528 ------SGGSHGFVVGHVCPE--AQDGGPIG----LIQNGDIINIDVQKRRID 568 (613)
Q Consensus 528 ------SGas~G~~IGHVsPE--Aa~GGpIA----lV~dGD~I~IDi~~r~L~ 568 (613)
-=.++|++.-+-..+ ...+.||. .|+.||+|.=|- ++-+-
T Consensus 124 i~~~~fPvfa~g~~p~~~~~~~~~~~n~pV~igGv~V~PGD~I~aD~-dGVvv 175 (221)
T PRK06201 124 LREMGFPVFARGVTHRGPYKDGPGEINVPVAIGGMVIEPGDLIVGDD-DGLVA 175 (221)
T ss_pred HhhCCCCeEEeccCCCCCCCCCccccCccEEECCEEEcCCCEEEEcC-CceEE
Confidence 111333322111111 23466664 699999999995 45443
No 35
>PRK14498 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional
Probab=65.09 E-value=69 Score=37.20 Aligned_cols=115 Identities=24% Similarity=0.257 Sum_probs=78.9
Q ss_pred chhhHHHHHhCCCCcCc-CCCCeEEEEecCCCccc-cc-----cchHHHHHHHHHHHHHcCCceeEEeccccCcccccCc
Q 007192 71 QGGSQAILHGVGLSEAD-MSKPQVGISSVWYEGNT-CN-----MHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGT 143 (613)
Q Consensus 71 ~a~~ra~l~a~G~~ded-~~kP~IgI~ns~~e~~P-ch-----~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~ 143 (613)
.+.+-++|.+.|+..=. ++||.|+|++|-+|+.+ +. .=.+.-...+++-+++.|.....+.++ .|
T Consensus 166 ~p~~i~~las~g~~~v~v~~~prv~vi~tG~El~~~~~~~~~g~i~dsn~~~l~~~l~~~g~~~~~~~~v--~D------ 237 (633)
T PRK14498 166 TPRDIGALAAGGVAEVPVYKKPRVGIISTGDELVEPGEPLKPGKIYDVNSYTLAAAVEEAGGEPVRYGIV--PD------ 237 (633)
T ss_pred CHHHHHHHHHCCCCEEEEecCcEEEEEecCccccCCCCCCCCCEEEEChHHHHHHHHHHCCCEEEEEEEe--CC------
Confidence 46788999999987655 57999999999999873 21 112334556777788888766554433 34
Q ss_pred cCceecccchHHHHHHHHHHHcccCCCcEEEccCC----CCCchhhHHhhhccCCCeEEEccCCCCCcc
Q 007192 144 KGMCFSLQSRDLIADSIETVMSAQWYDANISIPGC----DKNMPGTIMAMGRLNRPGIMVYGGTIKPGH 208 (613)
Q Consensus 144 ~GM~ysL~sRelIAdsiE~~~~a~~~Dg~V~l~gC----DK~vPG~lMaaaRlniPsi~v~gGpm~~G~ 208 (613)
+++.|+..++..++ ..|-+|..||= +..+|-.+ .+++ .+...|=+|.||.
T Consensus 238 --------d~~~i~~~l~~~~~--~~D~iIttGG~s~g~~D~~~~~l---~~~g--~~~~~~v~~~PG~ 291 (633)
T PRK14498 238 --------DEEELEAALRKALK--ECDLVLLSGGTSAGAGDVTYRVI---EELG--EVLVHGVAIKPGK 291 (633)
T ss_pred --------CHHHHHHHHHHHHh--cCCEEEECCCCcCCCcccHHHHH---HhcC--CEEEeeEeecCCC
Confidence 47888888888765 68999998875 23344333 3445 4666666777774
No 36
>PRK03955 hypothetical protein; Reviewed
Probab=62.55 E-value=13 Score=35.42 Aligned_cols=103 Identities=16% Similarity=0.192 Sum_probs=57.0
Q ss_pred EEeeEEEecCHHHHHHHHh--CCC-----------CCCCCeEEEEeCCCCCCCCCCCCCcchHHHHHhCCCCCeeEEEcC
Q 007192 458 FSGPALVFEGEESMIAAIS--EDP-----------MSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTD 524 (613)
Q Consensus 458 f~GpA~VFdseeda~~aI~--~g~-----------I~~~GdVvVIRyeGPkGgPGMpEml~~t~al~g~Gl~~~VALITD 524 (613)
-+|+|.|.++.-..+-.++ .|. --+ |-|+|+.+- ||.-. --...-.|...|... -|+|--
T Consensus 13 ~~Ge~lv~~~~lSf~ggvd~~tG~iid~~h~l~G~si~-gkIlv~p~~--kGSt~---gs~vl~~l~~~g~aP-~aiI~~ 85 (131)
T PRK03955 13 AEGEVIVSKKPISFLGGVDPETGIVIDKEHDLYGESIK-GKILVFPHG--KGSTV---GSYVIYQLAKNGTAP-KAIINL 85 (131)
T ss_pred EEEEEEEeCCCccccccccCCCCEEEecCCCcCCCccC-CEEEEEeCC--Ccccc---hHHHHHHHHHcCCCc-eEEEEe
Confidence 3688888877766643332 111 113 556666542 33211 111222344456544 333322
Q ss_pred CCCCC-CCCCcceEEecccccCCCCeEEeecCCEEEEecCCCEEEEe
Q 007192 525 GRFSG-GSHGFVVGHVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQ 570 (613)
Q Consensus 525 GRfSG-as~G~~IGHVsPEAa~GGpIAlV~dGD~I~IDi~~r~L~l~ 570 (613)
+-.+ .++|.+|..+- +.++=+...++|||+|++|-+++++.+.
T Consensus 86 -~~~~ils~GaIvAgIP--~V~~~~~~~l~~G~~V~Vdg~~G~V~i~ 129 (131)
T PRK03955 86 -EAEPIVATGAIISGIP--LVDKVDISKLKDGDRVVVDGDEGEVEIL 129 (131)
T ss_pred -cCCceeEeeeeecCCc--eEccccceecCCCCEEEEeCCCCEEEEc
Confidence 1111 36677776542 3445558899999999999999999874
No 37
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=62.44 E-value=58 Score=31.87 Aligned_cols=87 Identities=13% Similarity=-0.021 Sum_probs=57.1
Q ss_pred EEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCCCcE
Q 007192 93 VGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDAN 172 (613)
Q Consensus 93 IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~Dg~ 172 (613)
||++-...+ |..+.++.+.+++..++.|-....+.+ + .+.+.....++.++.. .+||+
T Consensus 2 Ig~i~~~~~----~~~~~~~~~gi~~~~~~~g~~~~~~~~----~-------------~~~~~~~~~l~~~~~~-~vdgi 59 (273)
T cd06305 2 IAVVRYGGS----GDFDQAYLAGTKAEAEALGGDLRVYDA----G-------------GDDAKQADQIDQAIAQ-KVDAI 59 (273)
T ss_pred eEEEeecCC----CcHHHHHHHHHHHHHHHcCCEEEEECC----C-------------CCHHHHHHHHHHHHHc-CCCEE
Confidence 566654322 446778889999999888755433211 1 1344455666766654 79999
Q ss_pred EEccCCCCCchhhHHhhhccCCCeEEEcc
Q 007192 173 ISIPGCDKNMPGTIMAMGRLNRPGIMVYG 201 (613)
Q Consensus 173 V~l~gCDK~vPG~lMaaaRlniPsi~v~g 201 (613)
|+.+..+...+..+--+.+.|+|.|++-.
T Consensus 60 i~~~~~~~~~~~~i~~~~~~~ipvV~~~~ 88 (273)
T cd06305 60 IIQHGRAEVLKPWVKRALDAGIPVVAFDV 88 (273)
T ss_pred EEecCChhhhHHHHHHHHHcCCCEEEecC
Confidence 99876555556666667788999888753
No 38
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=56.86 E-value=39 Score=40.63 Aligned_cols=103 Identities=17% Similarity=0.209 Sum_probs=63.2
Q ss_pred eEEeeEEEecCHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCCcchHHHHHhCCCCCeeEEEcCCCCCCCCCCcce
Q 007192 457 YFSGPALVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSHGFVV 536 (613)
Q Consensus 457 ~f~GpA~VFdseeda~~aI~~g~I~~~GdVvVIRyeGPkGgPGMpEml~~t~al~g~Gl~~~VALITDGRfSGas~G~~I 536 (613)
..+||++|-.+.+|+. ++.+ |+|||.+.--|. + +..|. +-.++||+-- +=+||..++
T Consensus 364 ~~~G~v~v~~~~~d~~------~~~~-g~ILV~~~~~p~-------~---~~~l~-----~~~giVte~G-g~tSH~Aiv 420 (782)
T TIGR01418 364 IASGKVKVIFDLKEMD------KFEE-GDILVTDMTDPD-------W---EPAMK-----RASAIVTNEG-GMTCHAAIV 420 (782)
T ss_pred ceEEEEEEeCCHHHHH------hcCC-CeEEEECCCCHH-------H---HHHhH-----hheEEEEcCC-CCccHHHHH
Confidence 3579999999998862 4677 999999888775 2 12221 3356777732 112332221
Q ss_pred ---EEeccccc--CCCCeEEeecCCEEEEecCC---CEEEEecCHHHHHHHHhcCCC
Q 007192 537 ---GHVCPEAQ--DGGPIGLIQNGDIINIDVQK---RRIDVQLTDEEMEERRRKWTP 585 (613)
Q Consensus 537 ---GHVsPEAa--~GGpIAlV~dGD~I~IDi~~---r~L~l~v~~eeL~~R~~~w~~ 585 (613)
-.+ | +. .++..-.+++||.|+||..+ +.+-..-.+.+. .+...|..
T Consensus 421 AR~lgI-P-avvg~~~~~~~l~~G~~v~vDg~~~~~G~v~~~~~~~~~-~~~~~~~~ 474 (782)
T TIGR01418 421 ARELGI-P-AVVGTGDATKTLKDGMEVTVDCAEGDTGYVYAGKLEHEV-KEVELSNM 474 (782)
T ss_pred HHhcCC-C-EEEcccchhhcccCCCEEEEEcCCCCCcEEEeCCcHHHH-HHHhhccC
Confidence 000 1 11 23456789999999999999 999877554332 33444543
No 39
>COG2313 IndA Uncharacterized enzyme involved in pigment biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=56.77 E-value=49 Score=35.31 Aligned_cols=183 Identities=18% Similarity=0.261 Sum_probs=98.9
Q ss_pred CCCeEEEEecC-CCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHccc
Q 007192 89 SKPQVGISSVW-YEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQ 167 (613)
Q Consensus 89 ~kP~IgI~ns~-~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~ 167 (613)
.||+|+.-+|. +-..|--.+ -+++..|++-|+..|.+|- ||++-+|--.- || |= +.+|.+.+..
T Consensus 24 g~PvVaLESTIisHGMPypqn-~ema~~ve~iiR~~GavpA---tIaii~G~i~i--GL--s~-------eelE~la~~~ 88 (310)
T COG2313 24 GKPVVALESTIISHGMPYPQN-VEMAREVEEIIRDQGAVPA---TIAIIGGKIKI--GL--SK-------EELELLAREG 88 (310)
T ss_pred CCCEEEEeeeeeecCCCCCcH-HHHHHHHHHHHHhcCCcce---eEEEeccEEEe--ec--CH-------HHHHHHhhcC
Confidence 58999998874 334443333 3689999999999999996 55655654211 11 11 1112222211
Q ss_pred ------CCC-cEEEccC--CCCCchhhHHhhhccCCCeEEEccCCCCCcccCC--cccceehHHHHHHHHhcCCCCHHHH
Q 007192 168 ------WYD-ANISIPG--CDKNMPGTIMAMGRLNRPGIMVYGGTIKPGHFQG--HTYDIVSAFQVYGEYVSGSISDEQR 236 (613)
Q Consensus 168 ------~~D-g~V~l~g--CDK~vPG~lMaaaRlniPsi~v~gGpm~~G~~~g--~~~~~~~~~e~~g~~~~G~i~~eel 236 (613)
.-| +.|.--+ -.-+|-..|+.|++.+| -+|++||. -|.++| +.+|+.. +|
T Consensus 89 ~a~KvsrrDl~~vvA~~~~gaTTVAaTMi~A~~aGI-~vfaTGGi--GGVHrGAe~t~DISa----------------DL 149 (310)
T COG2313 89 NAMKVSRRDLPFVVAEGKNGATTVAATMILAALAGI-KVFATGGI--GGVHRGAEHTFDISA----------------DL 149 (310)
T ss_pred ccceeeccchHHHHhcCcCCcchHHHHHHHHHHcCc-eEEEecCc--ccccCCcccccccch----------------hH
Confidence 111 0111112 23578889999999999 58999997 455654 4566652 22
Q ss_pred HHHHHh--cCCCCCCCCccchHHHHHHHHHHhcCCCCC--CCCCCCCChhHHHHHHHHHHHHHHHHhCCCC-cccccCHH
Q 007192 237 MNVVLN--SCPGAGACGGMYTANTMASAIEAMGMSLPY--SSSIPAEDPLKLDECRLAGKYLLELLRMDLK-PRDIITKK 311 (613)
Q Consensus 237 ~~~E~~--acp~~GsC~~mgTANTM~~~~EaLGm~LPG--sa~~pA~~~~r~~~a~~aG~~iv~lv~~~i~-PrdIlT~~ 311 (613)
.|+-+. ..-+.|.=+-+----||- +.|..|.-+-| +-..||..+++ + +++ |-.+=|.+
T Consensus 150 ~ELa~T~v~vV~AGaKsILDi~~TlE-~LET~gVPvvg~~t~~fPaF~sR~------S----------g~~~pl~l~~pe 212 (310)
T COG2313 150 TELARTNVTVVCAGAKSILDIGLTLE-VLETQGVPVVGYQTNEFPAFFSRE------S----------GFRVPLRLESPE 212 (310)
T ss_pred HHHhcCCeEEEecCchhhhccHHHHH-HHHhcCcceeecCCCcccchhccc------C----------CCcCccccCCHH
Confidence 222221 111112222222223443 34666766554 44567766543 2 332 56677777
Q ss_pred HHHHHHHHHHh
Q 007192 312 SLRNAMVIVMA 322 (613)
Q Consensus 312 af~NAi~v~~A 322 (613)
.+.|....--.
T Consensus 213 ~ia~~~~t~~~ 223 (310)
T COG2313 213 EIARILATKWQ 223 (310)
T ss_pred HHHHHHHHHHH
Confidence 77776655433
No 40
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=55.95 E-value=22 Score=34.15 Aligned_cols=90 Identities=19% Similarity=0.142 Sum_probs=59.4
Q ss_pred CCCCeEEEEe-cCCCccccccchHHHHHHHHHHHHHcCCc---eeEEeccccCcccccCccCceecccchHHHHHHHHHH
Q 007192 88 MSKPQVGISS-VWYEGNTCNMHLLRLSEAVKRGVEEAGMV---GFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETV 163 (613)
Q Consensus 88 ~~kP~IgI~n-s~~e~~Pch~hl~~la~~Vk~gI~~aGG~---p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~ 163 (613)
|+++.|||+. .||+. --+.|.+...+.+...|.. --.|.+|+.-| ||. .+..+
T Consensus 1 ~~~~ri~IV~s~~n~~-----i~~~ll~~a~~~l~~~g~~~~~i~~~~VPGa~E------------lP~------a~~~l 57 (144)
T PF00885_consen 1 MSGLRIAIVVSRFNEE-----ITDRLLEGALEELKRHGVAEENIEVIRVPGAFE------------LPL------AAKRL 57 (144)
T ss_dssp -TTEEEEEEEESTTHH-----HHHHHHHHHHHHHHHTTTTGGCEEEEEESSGGG------------HHH------HHHHH
T ss_pred CCCCEEEEEEEeccHH-----HHHHHHHHHHHHHHHcCCCccceEEEEcCCHHH------------HHH------HHHHH
Confidence 4567788765 46654 3456777778888888873 34456665433 442 34555
Q ss_pred HcccCCCcEEEcc------------CCCCCchhhHHhhhccCCCeEEEc
Q 007192 164 MSAQWYDANISIP------------GCDKNMPGTIMAMGRLNRPGIMVY 200 (613)
Q Consensus 164 ~~a~~~Dg~V~l~------------gCDK~vPG~lMaaaRlniPsi~v~ 200 (613)
++...|||+|+|+ -|+-..=|.+.-.+..++|.+|-.
T Consensus 58 ~~~~~~Davi~lG~VI~G~T~H~~~v~~~v~~gl~~lsl~~~~PV~~gv 106 (144)
T PF00885_consen 58 AESGRYDAVIALGCVIRGETDHFEYVANAVSRGLMDLSLEYGIPVIFGV 106 (144)
T ss_dssp HHCSTESEEEEEEEEE--SSTHHHHHHHHHHHHHHHHHHHHTSEEEEEE
T ss_pred hcccCccEEEEeccccCCCchHHHHHHHHHHHHHHHHhccCCccEEEEe
Confidence 6778899999998 244455566666677899998843
No 41
>PRK08245 hypothetical protein; Validated
Probab=55.53 E-value=31 Score=35.63 Aligned_cols=89 Identities=24% Similarity=0.274 Sum_probs=53.5
Q ss_pred HHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCCcchHHHHHhCCCCCeeEEEcCCCCC-----------CCCCCcce---
Q 007192 471 MIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFS-----------GGSHGFVV--- 536 (613)
Q Consensus 471 a~~aI~~g~I~~~GdVvVIRyeGPkGgPGMpEml~~t~al~g~Gl~~~VALITDGRfS-----------Gas~G~~I--- 536 (613)
.+++|+. +.+ |||+||-..|..-.-=+=|++. .+.+..|+ .++|+||..- =.++|+..
T Consensus 78 ~~~aid~--~~~-GdVlVid~~g~~~~a~~G~~~~--~~a~~~G~---~G~VidG~vRD~~ei~~~gfPvfarg~~p~~~ 149 (240)
T PRK08245 78 QRAAIET--CPP-GCVLVVDARGDARAGSFGDILC--TRLKKRGV---AGLVTDGGVRDSPGIAALGLPVWCAGPSAPTN 149 (240)
T ss_pred HHHHHhc--cCC-CeEEEEECCCCCCccccHHHHH--HHHHHCCC---eEEEEeeccCCHHHHhhCCCceEecccCCCCC
Confidence 4567765 688 9999999888653223334433 34566775 7789999631 11233222
Q ss_pred -EEecccccCCCCe----EEeecCCEEEEecCCCEEEE
Q 007192 537 -GHVCPEAQDGGPI----GLIQNGDIINIDVQKRRIDV 569 (613)
Q Consensus 537 -GHVsPEAa~GGpI----AlV~dGD~I~IDi~~r~L~l 569 (613)
++..|. ..+.|| ..|+.||+|.=| .++-+-+
T Consensus 150 ~~~~~~~-~~nvPV~igGv~V~PGD~I~aD-~dGVvvI 185 (240)
T PRK08245 150 LTGLTAV-DINVPIGCGGVAVFPGDIIVAD-DDGVVVI 185 (240)
T ss_pred CCCCceE-eecCCEEECCEEEcCCCEEEEc-CCceEEE
Confidence 122332 334455 469999999999 4555544
No 42
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=54.70 E-value=28 Score=38.90 Aligned_cols=154 Identities=23% Similarity=0.319 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCc-ccccCHHHHHHHHHHHHhcCCCchhHHhHHHHHHHhCCCCChHHHHHhhCCCCceee
Q 007192 283 KLDECRLAGKYLLELLRMDLKP-RDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVPFLAD 361 (613)
Q Consensus 283 r~~~a~~aG~~iv~lv~~~i~P-rdIlT~~af~NAi~v~~A~GGSTNavLHL~AIA~eagi~ltl~dfd~is~~vP~l~~ 361 (613)
=+..||+|+--||+|+++|-.. |-| +++=.=||--+.--++||+|+| ..|||.+
T Consensus 43 GQ~~AReAaGvIv~mik~gk~aGrgi------------Li~GppgTGKTAlA~gIa~eLG------------~dvPF~~- 97 (450)
T COG1224 43 GQEEAREAAGVIVKMIKQGKMAGRGI------------LIVGPPGTGKTALAMGIARELG------------EDVPFVA- 97 (450)
T ss_pred chHHHHHhhhHHHHHHHhCcccccEE------------EEECCCCCcHHHHHHHHHHHhC------------CCCCcee-
Confidence 3578999999999999999555 444 3444446666666778999877 4456542
Q ss_pred ccCCChhhHHHHHhhCCHHHHHHHHHHC-CCCCCCCCcccCcCHHHHhccCCCCCCCCCccCCCCCCCCCCCCEEEEecc
Q 007192 362 LKPSGKYVMEDVHKIGGTPAVIRYLLEL-GFLDGDCMTVTGKTLAENAKTFPHLSEGQDIIRPLSNPIKKTGHIQVLRGN 440 (613)
Q Consensus 362 l~P~G~~~m~dl~~aGGvpaVlk~L~~~-glL~~d~lTVtGkTl~e~l~~~~~~~~d~~VIrp~~~P~~~~Ggl~vL~GN 440 (613)
+.-|--|..+ ..=..++++.|+++ |+ -=|-..|.++.- + -.--|+-..+|+++.+-
T Consensus 98 isgsEiYS~E----~kKTE~L~qa~RraIGv--------rikE~reV~EGe-V---~~l~i~~~~~p~~~y~~------- 154 (450)
T COG1224 98 ISGSEIYSLE----VKKTEALTQALRRAIGV--------RIKETREVYEGE-V---VELEIRRARNPLNPYGK------- 154 (450)
T ss_pred eccceeeeec----ccHHHHHHHHHHHhhce--------EeeeeeEEEEEE-E---EEEEEeeccCCCCCccc-------
Confidence 3222223322 33446677777663 21 001111111100 0 01123445577777653
Q ss_pred CCCCCeEEccccCCCceEEeeEEEecCHHHHHHHHhCCCCCCCCeEEEEeCC
Q 007192 441 LAPEGSVAKITGKEGLYFSGPALVFEGEESMIAAISEDPMSFKGKVVVIRGE 492 (613)
Q Consensus 441 LAP~GAVvK~sa~~~~~f~GpA~VFdseeda~~aI~~g~I~~~GdVvVIRye 492 (613)
.|.++.+.+..+++. +.|+=-++..+-+..-+|.. ||||.|--+
T Consensus 155 -~~~~~~i~LkT~d~~------k~~~lg~~i~~ql~~~~V~~-GDVI~Id~e 198 (450)
T COG1224 155 -VPSGAIITLKTKDEE------KTLRLGPEIAEQLVKEGVEE-GDVIYIDAE 198 (450)
T ss_pred -cccceEEEEEecccc------eEeecCHHHHHHHHHhCccc-CCEEEEEcc
Confidence 367888777766554 56777778889999999999 999999644
No 43
>PRK12764 hypothetical protein; Provisional
Probab=54.34 E-value=22 Score=40.65 Aligned_cols=90 Identities=23% Similarity=0.303 Sum_probs=54.7
Q ss_pred HHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCCcchHHHHHhCCCCCeeEEEcCCCCCCC----CCCcce--EEeccc--
Q 007192 471 MIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGG----SHGFVV--GHVCPE-- 542 (613)
Q Consensus 471 a~~aI~~g~I~~~GdVvVIRyeGPkGgPGMpEml~~t~al~g~Gl~~~VALITDGRfSGa----s~G~~I--GHVsPE-- 542 (613)
.+++|+ .+++ ||||||-..|....-=+=|++.. +.+..|+ .++|+||..-=. .-|+.| --++|-
T Consensus 336 ~~~aid--~~~p-GdVlVId~~g~~~~a~~Gel~a~--~a~~~G~---~G~ViDG~vRD~~ei~~lg~PVfarg~~p~~~ 407 (500)
T PRK12764 336 QKRAFD--SVNP-GEVLVIEARGEKGTGTLGDILAL--RAQVRGA---AGVVTDGGVRDYAAVAELGLPVFFAGPHPAVL 407 (500)
T ss_pred HHHHHh--cCCC-CeEEEEECCCCCCeEchHHHHHH--HHHHCCC---eEEEEeecccCHHHHHhCCCCeEEeecCCCCC
Confidence 445664 4688 99999998887743334455433 3455675 789999975110 011211 222221
Q ss_pred ------ccCCCCe----EEeecCCEEEEecCCCEEEE
Q 007192 543 ------AQDGGPI----GLIQNGDIINIDVQKRRIDV 569 (613)
Q Consensus 543 ------Aa~GGpI----AlV~dGD~I~IDi~~r~L~l 569 (613)
...+.|| ..|+.||+|.=| .++-+-+
T Consensus 408 ~~~~~~~~~nvpV~~gGv~V~PGDiIvaD-~dGVvvI 443 (500)
T PRK12764 408 GRRHVPWDVDITVACGGATVQPGDVIVGD-DDGVVVI 443 (500)
T ss_pred CcCcccceeCCcEEECCEEEcCCCEEEEc-CCcEEEE
Confidence 2356676 679999999999 4555543
No 44
>PRK05865 hypothetical protein; Provisional
Probab=54.09 E-value=20 Score=43.51 Aligned_cols=92 Identities=21% Similarity=0.229 Sum_probs=56.6
Q ss_pred CCCceEEeeEEEecCHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCCcchHHHHHhCCCCCeeEEEcCCCCCCCCC
Q 007192 453 KEGLYFSGPALVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSH 532 (613)
Q Consensus 453 ~~~~~f~GpA~VFdseeda~~aI~~g~I~~~GdVvVIRyeGPkGgPGMpEml~~t~al~g~Gl~~~VALITDGRfSGas~ 532 (613)
...-..+|+++|-+. ++. .++++ |+|+|.++--|. .+..+. +--++||+-- +=.||
T Consensus 741 ~s~G~v~G~vrvv~~-~~~------~~~~~-g~ILVa~~tdp~----------~~~~~~-----~a~giVte~G-g~~SH 796 (854)
T PRK05865 741 VCGGRVRGRVRIVRP-ETI------DDLQP-GEILVAEVTDVG----------YTAAFC-----YAAAVVTELG-GPMSH 796 (854)
T ss_pred ccCCccEEEEEEecH-HHh------hhcCC-CeEEEeCCCCHH----------HHHHHH-----HheEEEeccC-CCccH
Confidence 344557999999873 332 35788 999999986654 222231 2345677732 11244
Q ss_pred CcceE---Eeccccc--CCCCeEEeecCCEEEEecCCCEEEEe
Q 007192 533 GFVVG---HVCPEAQ--DGGPIGLIQNGDIINIDVQKRRIDVQ 570 (613)
Q Consensus 533 G~~IG---HVsPEAa--~GGpIAlV~dGD~I~IDi~~r~L~l~ 570 (613)
+.+|. ++- +. ..+..-.++|||.|+||-.++.|.++
T Consensus 797 ~AIvARe~gIP--aVvgv~~at~~l~dG~~V~vDg~~G~V~~l 837 (854)
T PRK05865 797 AAVVAREFGFP--CVVDAQGATRFLPPGALVEVDGATGEIHVV 837 (854)
T ss_pred HHHHHHHcCCC--EEEccccHhhcCCCCCEEEEECCCcEEEEe
Confidence 33320 010 11 12345679999999999999999985
No 45
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=52.41 E-value=16 Score=31.05 Aligned_cols=58 Identities=17% Similarity=0.300 Sum_probs=39.6
Q ss_pred cchHHHHHHHHHHhcC-CCCCCCCCCCCChhHHHHHHHHHHHHHHHHhCCC-----CcccccCHHHHHHHHH
Q 007192 253 MYTANTMASAIEAMGM-SLPYSSSIPAEDPLKLDECRLAGKYLLELLRMDL-----KPRDIITKKSLRNAMV 318 (613)
Q Consensus 253 mgTANTM~~~~EaLGm-~LPGsa~~pA~~~~r~~~a~~aG~~iv~lv~~~i-----~PrdIlT~~af~NAi~ 318 (613)
.++..|+..++|.+|+ .|+ +..-..+|...=-+|-+++++-. .-|.-||-+-|++|++
T Consensus 3 ~~~~esvk~iAes~Gi~~l~--------de~a~~La~dveyrlreiiq~a~kfm~hskR~~Lt~~Di~~ALr 66 (66)
T PF02969_consen 3 VFSQESVKDIAESLGISNLS--------DEAAKALAEDVEYRLREIIQEALKFMRHSKRTKLTTDDINSALR 66 (66)
T ss_dssp ---HHHHHHHHHHTT---B---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH-
T ss_pred cCCHHHHHHHHHHcCCCCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Confidence 4677899999999999 333 55667788888888888877544 3478899999999974
No 46
>PRK06455 riboflavin synthase; Provisional
Probab=47.39 E-value=53 Score=32.39 Aligned_cols=83 Identities=18% Similarity=0.253 Sum_probs=54.0
Q ss_pred eEEE-EecCCCccccccchHHHHHHHHHHHHHcC--CceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccC
Q 007192 92 QVGI-SSVWYEGNTCNMHLLRLSEAVKRGVEEAG--MVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQW 168 (613)
Q Consensus 92 ~IgI-~ns~~e~~Pch~hl~~la~~Vk~gI~~aG--G~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~ 168 (613)
.||| +++||.. +|.+...+.+.+.| -.-..+.+|+.=| ||. .+..+++...
T Consensus 3 kigIV~s~fn~~--------~L~~gAi~~L~~~g~~~~I~v~~VPGa~E------------LP~------aakkL~~~~~ 56 (155)
T PRK06455 3 KIGIADTTFARV--------DMGSAAIDELRKLDPSAKIIRYTVPGIKD------------LPV------AAKKLIEEEG 56 (155)
T ss_pred EEEEEEEecchH--------HHHHHHHHHHHhcCCCCceEEEECCCHHH------------HHH------HHHHHHhcCC
Confidence 3555 4678874 56677777788865 2222335554433 221 1233345577
Q ss_pred CCcEEEccC----------CCCCchhhHHhhhccCCCeEEEc
Q 007192 169 YDANISIPG----------CDKNMPGTIMAMGRLNRPGIMVY 200 (613)
Q Consensus 169 ~Dg~V~l~g----------CDK~vPG~lMaaaRlniPsi~v~ 200 (613)
|||+|.|+- |+-..=|.++..+..|+|.++|+
T Consensus 57 yDaVIaLG~VG~t~h~d~Va~~vS~GL~~lsL~t~~PVi~v~ 98 (155)
T PRK06455 57 CDIVMALGMPGPTEKDKYCAHEASIGLIMAQLMTNKHIIEVF 98 (155)
T ss_pred CCEEEEecceeccCcchhHHHHHHHHHHHHHhhhCCCEEEEE
Confidence 999999973 55566788888889999999997
No 47
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=46.96 E-value=25 Score=35.43 Aligned_cols=43 Identities=16% Similarity=0.111 Sum_probs=22.3
Q ss_pred CeEEEEecCCC--cccccc-chHHHHHHHHHHHHHcCCceeEEecc
Q 007192 91 PQVGISSVWYE--GNTCNM-HLLRLSEAVKRGVEEAGMVGFRFNTI 133 (613)
Q Consensus 91 P~IgI~ns~~e--~~Pch~-hl~~la~~Vk~gI~~aGG~p~ef~ti 133 (613)
|+|||...+.+ ...++. ...-+++.--+.|++|||.|+-++..
T Consensus 1 PvIGI~~~~~~~~~~~~~~~~~~~i~~~Yv~~i~~aG~~pv~ip~~ 46 (217)
T PF07722_consen 1 PVIGITAQPSESDSSDFPGYPRSYIAASYVKAIEAAGGRPVPIPYD 46 (217)
T ss_dssp -EEEEE-EE----SHHHHHC-SEEEEHHHHHHHHHTT-EEEEE-SS
T ss_pred CEEEEeCCccccccCCcCchhHHHHhHHHHHHHHHcCCEEEEEccC
Confidence 89999998864 111111 11124444556788999999987643
No 48
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=46.17 E-value=21 Score=29.46 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.4
Q ss_pred HHhHHHHHHHhCCCCChHHHHHh
Q 007192 330 VLHLIAIARSVGLELSIDEFQKV 352 (613)
Q Consensus 330 vLHL~AIA~eagi~ltl~dfd~i 352 (613)
.=.+++||+++|++||.+||+..
T Consensus 27 ~e~~~~lA~~~Gf~ft~~el~~~ 49 (64)
T TIGR03798 27 PEDRVAIAKEAGFEFTGEDLKEA 49 (64)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHH
Confidence 55789999999999999999874
No 49
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=46.10 E-value=1e+02 Score=31.04 Aligned_cols=75 Identities=17% Similarity=0.179 Sum_probs=49.1
Q ss_pred CCCCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHccc
Q 007192 88 MSKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQ 167 (613)
Q Consensus 88 ~~kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~ 167 (613)
|+++.++|+..-+++.++-. .+.=...+++-+++.|..+++....-+.| .++.|...++..+...
T Consensus 1 ~~~~~~aIItvSd~~~~G~i-~D~ng~~L~~~L~~~G~~g~~v~~~iVpD--------------d~~~I~~aL~~a~~~~ 65 (193)
T PRK09417 1 MDTLKIGLVSISDRASSGVY-EDKGIPALEEWLASALTSPFEIETRLIPD--------------EQDLIEQTLIELVDEM 65 (193)
T ss_pred CCCcEEEEEEEcCcCCCCce-eechHHHHHHHHHHcCCCCceEEEEECCC--------------CHHHHHHHHHHHhhcC
Confidence 45788999998888877642 23334456677778886554332223334 4788999998887656
Q ss_pred CCCcEEEccC
Q 007192 168 WYDANISIPG 177 (613)
Q Consensus 168 ~~Dg~V~l~g 177 (613)
.+|-+|.-+|
T Consensus 66 ~~DlIITTGG 75 (193)
T PRK09417 66 GCDLVLTTGG 75 (193)
T ss_pred CCCEEEECCC
Confidence 7886666554
No 50
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=45.58 E-value=1.7e+02 Score=27.35 Aligned_cols=91 Identities=9% Similarity=0.052 Sum_probs=52.6
Q ss_pred EEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCCCcE
Q 007192 93 VGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDAN 172 (613)
Q Consensus 93 IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~Dg~ 172 (613)
||++-.++. -+....++.+.+++.+.+. |..+++-+...+. +-+-....++.+.+. .+|++
T Consensus 2 Ig~i~~~~~---~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~-~~d~i 62 (269)
T cd01391 2 IGVLLPLSG---SAPFGAQLLAGIELAAEEI-GRGLEVILADSQS--------------DPERALEALRDLIQQ-GVDGI 62 (269)
T ss_pred ceEEeecCC---CcHHHHHHHHHHHHHHHHh-CCceEEEEecCCC--------------CHHHHHHHHHHHHHc-CCCEE
Confidence 566665553 2345677777777777775 3444443332211 112345555555443 78999
Q ss_pred EEccCCCCCchhhHHhhhccCCCeEEEccCC
Q 007192 173 ISIPGCDKNMPGTIMAMGRLNRPGIMVYGGT 203 (613)
Q Consensus 173 V~l~gCDK~vPG~lMaaaRlniPsi~v~gGp 203 (613)
++. +|+......+-.+...|+|.|++.+..
T Consensus 63 i~~-~~~~~~~~~~~~~~~~~ip~v~~~~~~ 92 (269)
T cd01391 63 IGP-PSSSSALAVVELAAAAGIPVVSLDATA 92 (269)
T ss_pred Eec-CCCHHHHHHHHHHHHcCCcEEEecCCC
Confidence 875 566554443444567789999986543
No 51
>KOG3148 consensus Glucosamine-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=44.54 E-value=57 Score=33.53 Aligned_cols=69 Identities=29% Similarity=0.485 Sum_probs=51.2
Q ss_pred Cccccccch--------HHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHH----HHHHHHHcccC
Q 007192 101 EGNTCNMHL--------LRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIA----DSIETVMSAQW 168 (613)
Q Consensus 101 e~~Pch~hl--------~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIA----dsiE~~~~a~~ 168 (613)
|++|-|.|+ ..=.++-.+-|+++||+-+-.+-|++..-|+-..+|- ||.||--+- |.|+ .++.-
T Consensus 98 di~p~n~hildgna~dl~aec~~fe~kikeaggidlfvggigpdghiafnepgs--slvsrtrvktla~dti~--anarf 173 (273)
T KOG3148|consen 98 DINPANIHILDGNAADLQAECDAFERKIKEAGGIDLFVGGIGPDGHIAFNEPGS--SLVSRTRVKTLAMDTIL--ANARF 173 (273)
T ss_pred ccCcccceeecCchHHHHHHHHHHHHHHHhcCCeEEEeeccCCCCceeeCCCcc--hhhhhhhHHHHhHHHHH--hhcee
Confidence 567777774 3445677788999999999999999988899888875 899997543 3333 35667
Q ss_pred CCcEE
Q 007192 169 YDANI 173 (613)
Q Consensus 169 ~Dg~V 173 (613)
|||=+
T Consensus 174 fdgd~ 178 (273)
T KOG3148|consen 174 FDGDL 178 (273)
T ss_pred cCCcc
Confidence 88643
No 52
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=43.85 E-value=2.4e+02 Score=27.44 Aligned_cols=86 Identities=14% Similarity=0.073 Sum_probs=52.4
Q ss_pred eEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCCCc
Q 007192 92 QVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDA 171 (613)
Q Consensus 92 ~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~Dg 171 (613)
+|||+..-.+ |..+.++.+.+++...+.|-....+.+ + ++ +.+.....++.+ ..+.+||
T Consensus 1 ~i~vi~~~~~----~~~~~~~~~gi~~~~~~~~~~~~~~~~----~----------~~--~~~~~~~~~~~l-~~~~vdg 59 (264)
T cd01574 1 TIGVVTTDLA----LHGPSSTLAAIESAAREAGYAVTLSML----A----------EA--DEEALRAAVRRL-LAQRVDG 59 (264)
T ss_pred CEEEEeCCCC----cccHHHHHHHHHHHHHHCCCeEEEEeC----C----------CC--chHHHHHHHHHH-HhcCCCE
Confidence 3677664322 456788888899998887644433321 1 00 123334445554 4667999
Q ss_pred EEEccCCCCCchhhHHhhhccCCCeEEEc
Q 007192 172 NISIPGCDKNMPGTIMAMGRLNRPGIMVY 200 (613)
Q Consensus 172 ~V~l~gCDK~vPG~lMaaaRlniPsi~v~ 200 (613)
+++.+ |+.... .+.-+.+.|+|.|++-
T Consensus 60 iii~~-~~~~~~-~~~~~~~~~ipvv~~~ 86 (264)
T cd01574 60 VIVNA-PLDDAD-AALAAAPADVPVVFVD 86 (264)
T ss_pred EEEeC-CCCChH-HHHHHHhcCCCEEEEe
Confidence 99865 565544 3444567899999984
No 53
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=43.29 E-value=3.7e+02 Score=27.47 Aligned_cols=103 Identities=17% Similarity=0.135 Sum_probs=60.8
Q ss_pred HHHHHhCCCCcCcC-------CCCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCce
Q 007192 75 QAILHGVGLSEADM-------SKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMC 147 (613)
Q Consensus 75 ra~l~a~G~~ded~-------~kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ 147 (613)
+...+.+||..... +...||++-...+ |..+.++.+.+.+...+.|-..+.+.+ +.
T Consensus 38 ~~~a~~lgY~pn~~a~~l~~~~~~~Igvi~~~~~----~~~~~~~~~~i~~~~~~~gy~~~i~~~----~~--------- 100 (327)
T TIGR02417 38 MAVVREQGYQPNIHAASLRAGRSRTIGLVIPDLE----NYSYARIAKELEQQCREAGYQLLIACS----DD--------- 100 (327)
T ss_pred HHHHHHhCCCCCHHHHHhhcCCCceEEEEeCCCC----CccHHHHHHHHHHHHHHCCCEEEEEeC----CC---------
Confidence 34556677766542 2358999865321 346778888888888887755544322 10
Q ss_pred ecccchHHHHHHHHHHHcccCCCcEEEccCCCCCchhhHHhhhccCCCeEEEc
Q 007192 148 FSLQSRDLIADSIETVMSAQWYDANISIPGCDKNMPGTIMAMGRLNRPGIMVY 200 (613)
Q Consensus 148 ysL~sRelIAdsiE~~~~a~~~Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~ 200 (613)
+.+--...++.+ ..+.+||+|+.+..... +-.+-.+.+.++|.|++-
T Consensus 101 ----~~~~~~~~~~~l-~~~~vdgiIi~~~~~~~-~~~~~~l~~~~iPvV~~~ 147 (327)
T TIGR02417 101 ----NPDQEKVVIENL-LARQVDALIVASCMPPE-DAYYQKLQNEGLPVVALD 147 (327)
T ss_pred ----CHHHHHHHHHHH-HHcCCCEEEEeCCCCCC-hHHHHHHHhcCCCEEEEc
Confidence 112222344553 45789999987643322 333334456789998875
No 54
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=43.13 E-value=1.7e+02 Score=28.83 Aligned_cols=89 Identities=10% Similarity=0.004 Sum_probs=54.3
Q ss_pred EEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCCCcE
Q 007192 93 VGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDAN 172 (613)
Q Consensus 93 IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~Dg~ 172 (613)
||++..... -|-.+.++.+.+++...+.|-..+.+.+ |. + +-+-....++.+++ +.+||+
T Consensus 2 i~~i~~~~~---~~~~~~~~~~g~~~~~~~~g~~v~~~~~----~~---------~---~~~~~~~~i~~l~~-~~vdgi 61 (271)
T cd06312 2 IAFVTHGPA---GDPFWTVVKNGAEDAAKDLGVDVEYRGP----ET---------F---DVADMARLIEAAIA-AKPDGI 61 (271)
T ss_pred EEEecCCCC---CCcHHHHHHHHHHHHHHHhCCEEEEECC----CC---------C---CHHHHHHHHHHHHH-hCCCEE
Confidence 566654321 3568889999999999987644333222 11 0 11223345555444 579999
Q ss_pred EEccCCCCCchhhHHhhhccCCCeEEEcc
Q 007192 173 ISIPGCDKNMPGTIMAMGRLNRPGIMVYG 201 (613)
Q Consensus 173 V~l~gCDK~vPG~lMaaaRlniPsi~v~g 201 (613)
|+.+...+.+..++=.+.+.|+|.|++-.
T Consensus 62 ii~~~~~~~~~~~l~~~~~~~ipvV~~~~ 90 (271)
T cd06312 62 VVTIPDPDALDPAIKRAVAAGIPVISFNA 90 (271)
T ss_pred EEeCCChHHhHHHHHHHHHCCCeEEEeCC
Confidence 99875434344455556677999999854
No 55
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=42.41 E-value=3.2e+02 Score=28.20 Aligned_cols=53 Identities=13% Similarity=0.377 Sum_probs=40.0
Q ss_pred CCchhHHhHHHHHHHhCCC-------CChHHHHHhhCC--CCceeeccCCCh-hhHHHHHhhC
Q 007192 325 GSTNAVLHLIAIARSVGLE-------LSIDEFQKVSDE--VPFLADLKPSGK-YVMEDVHKIG 377 (613)
Q Consensus 325 GSTNavLHL~AIA~eagi~-------ltl~dfd~is~~--vP~l~~l~P~G~-~~m~dl~~aG 377 (613)
.++-..+.-...+.++|-| .+.++|.++.+. .|++.+..|+++ .+.++|...|
T Consensus 157 ~~~~eai~Ra~ay~~AGAD~v~v~~~~~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~l~~lG 219 (243)
T cd00377 157 EGLDEAIERAKAYAEAGADGIFVEGLKDPEEIRAFAEAPDVPLNVNMTPGGNLLTVAELAELG 219 (243)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHCC
Confidence 3555566666667788776 267889999987 688888888876 7888888776
No 56
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=41.37 E-value=2.5e+02 Score=27.59 Aligned_cols=87 Identities=11% Similarity=0.039 Sum_probs=52.8
Q ss_pred eEEEEecCC---CccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccC
Q 007192 92 QVGISSVWY---EGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQW 168 (613)
Q Consensus 92 ~IgI~ns~~---e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~ 168 (613)
.|||+..-. |...-|..+.++.+.+++..++.|-..+.+.+ + . . .. ..++.++..+.
T Consensus 5 ~i~vi~p~~~~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~v~~~----~----~------~--~~----~~~~~~l~~~~ 64 (275)
T cd06295 5 TIALVVPEPHERDQSFSDPFFLSLLGGIADALAERGYDLLLSFV----S----S------P--DR----DWLARYLASGR 64 (275)
T ss_pred EEEEEecCccccccccCCchHHHHHHHHHHHHHHcCCEEEEEeC----C----c------h--hH----HHHHHHHHhCC
Confidence 467775321 11234456788888899999888766555432 1 0 0 01 23344556788
Q ss_pred CCcEEEccCCCCCchhhHHhhhccCCCeEEEc
Q 007192 169 YDANISIPGCDKNMPGTIMAMGRLNRPGIMVY 200 (613)
Q Consensus 169 ~Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~ 200 (613)
+||+|+.+ |+... ..+=-+...|+|.|++.
T Consensus 65 ~dgiii~~-~~~~~-~~~~~~~~~~ipvV~~~ 94 (275)
T cd06295 65 ADGVILIG-QHDQD-PLPERLAETGLPFVVWG 94 (275)
T ss_pred CCEEEEeC-CCCCh-HHHHHHHhCCCCEEEEC
Confidence 99999975 55432 33334557899999884
No 57
>COG2914 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.78 E-value=25 Score=32.16 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=23.0
Q ss_pred EEeecCCEEEEecCCCEEEEecCHHHHHHHHhc
Q 007192 550 GLIQNGDIINIDVQKRRIDVQLTDEEMEERRRK 582 (613)
Q Consensus 550 AlV~dGD~I~IDi~~r~L~l~v~~eeL~~R~~~ 582 (613)
..|+|||+|+|==+ |..|+.|+.+||+.
T Consensus 63 ~~l~dgDRVEIyRP-----LlaDPKE~RR~Ra~ 90 (99)
T COG2914 63 DELHDGDRVEIYRP-----LLADPKEARRKRAE 90 (99)
T ss_pred ccccCCCEEEEecc-----cccChHHHHHHHHH
Confidence 45999999999655 56899999988865
No 58
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=40.65 E-value=3e+02 Score=28.08 Aligned_cols=103 Identities=14% Similarity=0.082 Sum_probs=58.4
Q ss_pred HHHHHhCCCCcCcC-------CCCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCce
Q 007192 75 QAILHGVGLSEADM-------SKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMC 147 (613)
Q Consensus 75 ra~l~a~G~~ded~-------~kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ 147 (613)
+...+.+||..... +...|||+-...+ |..+.++.+.+.+...+.|-.-+.+.+ .+
T Consensus 39 ~~~a~elgY~pn~~a~~l~~~~~~~Igvv~~~~~----~~~~~~l~~gi~~~~~~~g~~~~~~~~---~~---------- 101 (328)
T PRK11303 39 MAVVREHNYHPNAVAAGLRAGRTRSIGLIIPDLE----NTSYARIAKYLERQARQRGYQLLIACS---DD---------- 101 (328)
T ss_pred HHHHHHhCCCCCHHHHHhhcCCCceEEEEeCCCC----CchHHHHHHHHHHHHHHcCCEEEEEeC---CC----------
Confidence 34556677765432 3468999865321 346777888888888887743322221 11
Q ss_pred ecccchHHHHHHHHHHHcccCCCcEEEccCCCCCchhhHHhhhccCCCeEEEc
Q 007192 148 FSLQSRDLIADSIETVMSAQWYDANISIPGCDKNMPGTIMAMGRLNRPGIMVY 200 (613)
Q Consensus 148 ysL~sRelIAdsiE~~~~a~~~Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~ 200 (613)
. +.++ .+.++.+ ..+.+||+|+++ ++....-.+--+.+.++|.|++-
T Consensus 102 -~-~~~~--~~~~~~l-~~~~vdgiIi~~-~~~~~~~~~~~l~~~~iPvV~v~ 148 (328)
T PRK11303 102 -Q-PDNE--MRCAEHL-LQRQVDALIVST-SLPPEHPFYQRLQNDGLPIIALD 148 (328)
T ss_pred -C-HHHH--HHHHHHH-HHcCCCEEEEcC-CCCCChHHHHHHHhcCCCEEEEC
Confidence 0 1111 2344443 456899999864 43222223334457899999884
No 59
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=40.58 E-value=1.2e+02 Score=29.48 Aligned_cols=68 Identities=10% Similarity=-0.029 Sum_probs=47.7
Q ss_pred CCCCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHccc
Q 007192 88 MSKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQ 167 (613)
Q Consensus 88 ~~kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~ 167 (613)
+.+|.|||+.+-+|... -.+.-...++.-+.+.|..+....++ -| +.+.|.+.++..+..+
T Consensus 2 ~~~~rv~vit~~d~~~~---~~d~n~~~l~~~L~~~G~~v~~~~iv--~D--------------d~~~i~~~l~~~~~~~ 62 (163)
T TIGR02667 2 FIPLRIAILTVSDTRTE---EDDTSGQYLVERLTEAGHRLADRAIV--KD--------------DIYQIRAQVSAWIADP 62 (163)
T ss_pred CCccEEEEEEEeCcCCc---cCCCcHHHHHHHHHHCCCeEEEEEEc--CC--------------CHHHHHHHHHHHHhcC
Confidence 46899999999888753 23444557777888899876555543 34 4788999998877656
Q ss_pred CCCcEEE
Q 007192 168 WYDANIS 174 (613)
Q Consensus 168 ~~Dg~V~ 174 (613)
.+|-+|.
T Consensus 63 ~~DlVIt 69 (163)
T TIGR02667 63 DVQVILI 69 (163)
T ss_pred CCCEEEE
Confidence 7774433
No 60
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=40.57 E-value=1.6e+02 Score=29.14 Aligned_cols=80 Identities=16% Similarity=0.162 Sum_probs=54.5
Q ss_pred eEEEEecCC-CccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCCC
Q 007192 92 QVGISSVWY-EGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYD 170 (613)
Q Consensus 92 ~IgI~ns~~-e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~D 170 (613)
.||++.+|. +-..-|..+.++.+.+.+..++.|-....+++ +. . . + ...+.+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~----~~----------~---------~-~--~~~~~vd 54 (270)
T cd01544 1 RIAIVQWYSEEEELDDPYYLSIRLGIEKRAQELGIELTKFFR----DD----------D---------L-L--EILEDVD 54 (270)
T ss_pred CeEEEEeccccccccCccHHHHHHHHHHHHHHcCCEEEEEec----cc----------h---------h-H--HhccCcC
Confidence 388999987 22344778889999999999998866665554 11 0 0 1 1468899
Q ss_pred cEEEccCCCCCchhhHHhhhccCCCeEEEc
Q 007192 171 ANISIPGCDKNMPGTIMAMGRLNRPGIMVY 200 (613)
Q Consensus 171 g~V~l~gCDK~vPG~lMaaaRlniPsi~v~ 200 (613)
|+|+++.-+ +-.+.-+.+.++|.|++-
T Consensus 55 gii~~~~~~---~~~~~~~~~~~~pvV~~~ 81 (270)
T cd01544 55 GIIAIGKFS---QEQLAKLAKLNPNLVFVD 81 (270)
T ss_pred EEEEecCCC---HHHHHHHHhhCCCEEEEC
Confidence 999986433 233444567799999984
No 61
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=38.80 E-value=2.3e+02 Score=27.52 Aligned_cols=86 Identities=13% Similarity=0.128 Sum_probs=51.8
Q ss_pred EEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCCCcE
Q 007192 93 VGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDAN 172 (613)
Q Consensus 93 IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~Dg~ 172 (613)
|||+-. + .-+..+.++.+.+++...+.|-.-+.+. +|. . ..+.. ..+...+..+..||+
T Consensus 2 I~vi~~--~--~~~~~~~~~~~gi~~~~~~~g~~~~~~~----~~~---~---------~~~~~-~~~~~~l~~~~vdgi 60 (270)
T cd01545 2 IGLLYD--N--PSPGYVSEIQLGALDACRDTGYQLVIEP----CDS---G---------SPDLA-ERVRALLQRSRVDGV 60 (270)
T ss_pred EEEEEc--C--CCcccHHHHHHHHHHHHHhCCCeEEEEe----CCC---C---------chHHH-HHHHHHHHHCCCCEE
Confidence 566553 2 2256788888899999888763333221 111 0 11222 334445566889999
Q ss_pred EEccCCCCCchhhHHhhhccCCCeEEEc
Q 007192 173 ISIPGCDKNMPGTIMAMGRLNRPGIMVY 200 (613)
Q Consensus 173 V~l~gCDK~vPG~lMaaaRlniPsi~v~ 200 (613)
|+. .|+...+-.+--+.+.++|.|++-
T Consensus 61 ii~-~~~~~~~~~~~~~~~~~ipvv~i~ 87 (270)
T cd01545 61 ILT-PPLSDNPELLDLLDEAGVPYVRIA 87 (270)
T ss_pred EEe-CCCCCccHHHHHHHhcCCCEEEEe
Confidence 986 455433444445667899999985
No 62
>PRK01215 competence damage-inducible protein A; Provisional
Probab=38.56 E-value=1.1e+02 Score=32.09 Aligned_cols=61 Identities=16% Similarity=0.016 Sum_probs=44.9
Q ss_pred CCCCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHc
Q 007192 88 MSKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMS 165 (613)
Q Consensus 88 ~~kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~ 165 (613)
|++|.|+|+++-+|+..+..- +.-+..+++-+.+.|....... .+.| ..+.|.+.++....
T Consensus 1 ~~~~~v~Ii~~GdEll~G~i~-dtn~~~l~~~L~~~G~~v~~~~--~v~D--------------d~~~I~~~l~~a~~ 61 (264)
T PRK01215 1 MDKWFAWIITIGNELLIGRTV-NTNASWIARRLTYLGYTVRRIT--VVMD--------------DIEEIVSAFREAID 61 (264)
T ss_pred CCCCEEEEEEEChhccCCeEE-EhhHHHHHHHHHHCCCeEEEEE--EeCC--------------CHHHHHHHHHHHhc
Confidence 579999999999999988743 4556677777888886653332 3455 36788888888765
No 63
>KOG3135 consensus 1,4-benzoquinone reductase-like; Trp repressor binding protein-like/protoplast-secreted protein [General function prediction only]
Probab=38.33 E-value=39 Score=34.10 Aligned_cols=165 Identities=23% Similarity=0.307 Sum_probs=89.4
Q ss_pred CeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccc-cCcccc----cCccCceecccchHHHHHHHHHHHc
Q 007192 91 PQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIG-VSDAIS----MGTKGMCFSLQSRDLIADSIETVMS 165 (613)
Q Consensus 91 P~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tia-v~Dgia----~g~~GM~ysL~sRelIAdsiE~~~~ 165 (613)
|.|.|+--+.. -|...||+++|+||..+||.+--+.++- .++-+. -...=-.|-...+|.++
T Consensus 2 ~kv~iv~ys~y-----ghv~~lAe~~kkGie~a~geA~i~qVpEtl~~evl~km~a~pkp~d~piit~~~L~-------- 68 (203)
T KOG3135|consen 2 PKVAIVIYSTY-----GHVAKLAEAEKKGIESAGGEATIYQVPETLSEEVLEKMKAPPKPSDYPIITPETLT-------- 68 (203)
T ss_pred ceEEEEEEEcc-----cHHHHHHHHHHhhhhccCCeeEEEEcccccCHHHHHHhcCCCCCccCCccCHHHHh--------
Confidence 55666652222 2666799999999999999887776654 333331 11111234444554432
Q ss_pred ccCCCcEEE-ccCCCCCchhhHHhhh----------cc-CC-CeEEEccCCCCCcccCCcccceehHHHHHHHHh-cCCC
Q 007192 166 AQWYDANIS-IPGCDKNMPGTIMAMG----------RL-NR-PGIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYV-SGSI 231 (613)
Q Consensus 166 a~~~Dg~V~-l~gCDK~vPG~lMaaa----------Rl-ni-Psi~v~gGpm~~G~~~g~~~~~~~~~e~~g~~~-~G~i 231 (613)
.+|+.++ ++.-=-++|++.++-- .| +. -.||++.|+.- .|+..++ +.++-.+. .|-|
T Consensus 69 --e~D~flFG~PTRfG~~~AQ~kaF~D~TggLW~~~aL~GK~AG~F~Stgs~g----GgqE~ta---lta~t~LvHHGmi 139 (203)
T KOG3135|consen 69 --EYDGFLFGFPTRFGNMPAQWKAFWDSTGGLWAKGALAGKPAGIFVSTGSQG----GGQETTA---LTAITQLVHHGMI 139 (203)
T ss_pred --hccceeecccccccCcHHHHHHHHhccCchhhhccccCCceeEEEeccCCC----CchHhHH---HHHHHHHHhcceE
Confidence 3677654 5555556777777532 22 33 45899988532 2344333 22332222 1211
Q ss_pred --------CHHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHhcCCCCCCCCCC------CCChhHHHHHHHHHHHHHHH
Q 007192 232 --------SDEQRMNVVLNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIP------AEDPLKLDECRLAGKYLLEL 297 (613)
Q Consensus 232 --------~~eel~~~E~~acp~~GsC~~mgTANTM~~~~EaLGm~LPGsa~~p------A~~~~r~~~a~~aG~~iv~l 297 (613)
.-.++.+||.. =|=|.=|+++.- ..+..-+++|+--|+.+.+.
T Consensus 140 fVPlGYkn~~a~m~~me~V-----------------------~Ggsp~GAGt~Ag~DGsR~ps~lEL~~a~~qGk~f~~~ 196 (203)
T KOG3135|consen 140 FVPLGYKNFGAEMFEMEEV-----------------------HGGSPWGAGTFAGIDGSREPSELELQQAEIQGKYFAEI 196 (203)
T ss_pred EEecccchhhhhhhhhhcc-----------------------cCCCCCCCceeecCCCCCCCCHHHHHHHHHhhHHHHHH
Confidence 22455555542 222222322222 24566788899999998887
Q ss_pred HhC
Q 007192 298 LRM 300 (613)
Q Consensus 298 v~~ 300 (613)
+++
T Consensus 197 ~kk 199 (203)
T KOG3135|consen 197 VKK 199 (203)
T ss_pred HHH
Confidence 764
No 64
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=37.81 E-value=1.6e+02 Score=32.65 Aligned_cols=102 Identities=23% Similarity=0.252 Sum_probs=57.3
Q ss_pred eEEeeEE---Eec-CHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCCcchHHHHHhCCCCCeeEEEcCCCCC----
Q 007192 457 YFSGPAL---VFE-GEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFS---- 528 (613)
Q Consensus 457 ~f~GpA~---VFd-seeda~~aI~~g~I~~~GdVvVIRyeGPkGgPGMpEml~~t~al~g~Gl~~~VALITDGRfS---- 528 (613)
++-|||+ ++. +.....++|+. .++ ||||||-. |....-=+=|++ +.+.+..|+ .++|+||..-
T Consensus 262 ~~~G~A~Tv~~~~~d~~~~~~~~~~--~~~-G~VlVi~~-~~~~~a~~G~~~--~~~a~~~G~---~G~VidG~vRD~~~ 332 (430)
T PRK07028 262 KMVGKAVTVQTFAGDWAKPVEAIDV--AKP-GDVIVIYN-SSKDIAPWGELA--TLSCLNKGI---AGVVIDGAVRDVDE 332 (430)
T ss_pred eEEEEEEEEEeeCCCcHHHHHHHhc--CCC-CeEEEEEC-CCCCceeecHHH--HHHHHHCCC---eEEEEeeccCCHHH
Confidence 3557663 333 23334566664 588 99999988 543221122333 234556775 7899999743
Q ss_pred ----C---CCCCcceEE---ecccccCCCCe----EEeecCCEEEEecCCCEEEE
Q 007192 529 ----G---GSHGFVVGH---VCPEAQDGGPI----GLIQNGDIINIDVQKRRIDV 569 (613)
Q Consensus 529 ----G---as~G~~IGH---VsPEAa~GGpI----AlV~dGD~I~IDi~~r~L~l 569 (613)
| .++|++..+ ..| ...+.|| ..|+.||+|.=| .++-+-+
T Consensus 333 i~~~~~pv~~~g~~p~~~~~~~~-~~~nvpv~~ggv~V~pGD~i~aD-~dGvvvi 385 (430)
T PRK07028 333 IRKLGFPVFARAIVPNAGEPKGF-GEINAEIVCGGQTVRPGDWIIGD-ENGVVVV 385 (430)
T ss_pred HhhCCCCeEeeecCCCCCCCCCc-cccCCCEEECCEEECCCCEEEEc-CCceEEE
Confidence 1 133332211 111 2345566 469999999999 4555433
No 65
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=37.61 E-value=2.2e+02 Score=29.78 Aligned_cols=92 Identities=14% Similarity=0.134 Sum_probs=58.1
Q ss_pred CCCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccC
Q 007192 89 SKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQW 168 (613)
Q Consensus 89 ~kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~ 168 (613)
++-.||++-... -|-.+.++.+.+.+...+.|+.-+.+... + . +.+.-...++. +..+.
T Consensus 23 ~~~~Igvv~~~~----~~~f~~~~~~gi~~~a~~~g~~~~~~~~~---~----~---------~~~~~~~~i~~-l~~~~ 81 (330)
T PRK15395 23 ADTRIGVTIYKY----DDNFMSVVRKAIEKDAKAAPDVQLLMNDS---Q----N---------DQSKQNDQIDV-LLAKG 81 (330)
T ss_pred CCceEEEEEecC----cchHHHHHHHHHHHHHHhcCCeEEEEecC---C----C---------CHHHHHHHHHH-HHHcC
Confidence 456799876532 36788899999999999998865554221 1 0 12222234444 56788
Q ss_pred CCcEEEccCCCCCchhhHHhhhccCCCeEEEcc
Q 007192 169 YDANISIPGCDKNMPGTIMAMGRLNRPGIMVYG 201 (613)
Q Consensus 169 ~Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~g 201 (613)
+||+|+.+.=.+..+..+--+.+.++|.|++-.
T Consensus 82 vdgiIi~~~~~~~~~~~l~~l~~~giPvV~vd~ 114 (330)
T PRK15395 82 VKALAINLVDPAAAPTVIEKARGQDVPVVFFNK 114 (330)
T ss_pred CCEEEEeccCHHHHHHHHHHHHHCCCcEEEEcC
Confidence 999999752123345444445567999999854
No 66
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=37.53 E-value=2.7e+02 Score=26.99 Aligned_cols=85 Identities=19% Similarity=0.164 Sum_probs=51.4
Q ss_pred eEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCCCc
Q 007192 92 QVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDA 171 (613)
Q Consensus 92 ~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~Dg 171 (613)
.|||+-... .|..+.++.+.+++..++.|-....+.+ + . +.+-.-..++. +..+.+||
T Consensus 1 ~igvv~~~~----~~~~~~~~~~gi~~~~~~~g~~~~~~~~----~----~---------~~~~~~~~i~~-l~~~~~dg 58 (259)
T cd01542 1 LIGVIVPRL----DSFSTSRTVKGILAALYENGYQMLLMNT----N----F---------SIEKEIEALEL-LARQKVDG 58 (259)
T ss_pred CeEEEecCC----ccchHHHHHHHHHHHHHHCCCEEEEEeC----C----C---------CHHHHHHHHHH-HHhcCCCE
Confidence 367765432 2456688999999999998844332211 1 0 11222344555 34689999
Q ss_pred EEEccCCCCCchhhHHhhhccCCCeEEEc
Q 007192 172 NISIPGCDKNMPGTIMAMGRLNRPGIMVY 200 (613)
Q Consensus 172 ~V~l~gCDK~vPG~lMaaaRlniPsi~v~ 200 (613)
+|+.+ ++.. +..+-.+.+.++|.|++-
T Consensus 59 ii~~~-~~~~-~~~~~~~~~~~ipvv~~~ 85 (259)
T cd01542 59 IILLA-TTIT-DEHREAIKKLNVPVVVVG 85 (259)
T ss_pred EEEeC-CCCC-HHHHHHHhcCCCCEEEEe
Confidence 99985 4432 344444556789999983
No 67
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=36.52 E-value=2.2e+02 Score=27.56 Aligned_cols=95 Identities=14% Similarity=-0.023 Sum_probs=51.1
Q ss_pred eEEEEecCCCccccccchHHHHHHHHHHHHHc---C---CceeEEeccccCcccccCccCceecccchHHHHHHHHHHHc
Q 007192 92 QVGISSVWYEGNTCNMHLLRLSEAVKRGVEEA---G---MVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMS 165 (613)
Q Consensus 92 ~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~a---G---G~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~ 165 (613)
.||++-.++- |...--.++.+.++.++.+. | |..+++-+ +|.-. +.+.....++.+++
T Consensus 1 ~IG~i~p~~g--~~~~~~~~~~~~~~~a~~~~n~~~g~~g~~~~~~~---~d~~~-----------~~~~~~~~~~~l~~ 64 (299)
T cd04509 1 KIGVLFPLSG--PYAEYGAFRLAGAQLAVEEINAKGGIPGRKLELVI---YDDQS-----------DPARALAAARRLCQ 64 (299)
T ss_pred CeeEEEcCCC--cchhcCHHHHHHHHHHHHHHHhcCCCCCcEEEEEE---ecCCC-----------CHHHHHHHHHHHhc
Confidence 3787777774 33334445555555555443 3 34444432 33210 23344455666666
Q ss_pred ccCCCcEEEccCCCCCchhhHHhhhccCCCeEEEccCC
Q 007192 166 AQWYDANISIPGCDKNMPGTIMAMGRLNRPGIMVYGGT 203 (613)
Q Consensus 166 a~~~Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~gGp 203 (613)
.+..|++| .+.|+.....+.--+...|+|.|......
T Consensus 65 ~~~v~~ii-g~~~~~~~~~~~~~~~~~~iP~i~~~~~~ 101 (299)
T cd04509 65 QEGVDALV-GPVSSGVALAVAPVAEALKIPLISPGATA 101 (299)
T ss_pred ccCceEEE-cCCCcHHHHHHHHHHhhCCceEEeccCCC
Confidence 66788765 45666555433222446899988865443
No 68
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=36.16 E-value=4.1e+02 Score=27.27 Aligned_cols=102 Identities=12% Similarity=0.127 Sum_probs=58.5
Q ss_pred HHHHHhCCCCcCcC-------CCCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCce
Q 007192 75 QAILHGVGLSEADM-------SKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMC 147 (613)
Q Consensus 75 ra~l~a~G~~ded~-------~kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ 147 (613)
+...+.+||..... +.-.||++-.... |-.+.++.+.+.+...+.|-.-+.++ ++.
T Consensus 41 ~~~a~elgY~pn~~a~~l~~~~~~~Igvi~~~~~----~~~~~~~~~gi~~~~~~~g~~~~~~~----~~~--------- 103 (331)
T PRK14987 41 AAALDELGYIPNRAPDILSNATSRAIGVLLPSLT----NQVFAEVLRGIESVTDAHGYQTMLAH----YGY--------- 103 (331)
T ss_pred HHHHHHhCCCccHHHHHHhhCCCCEEEEEeCCCc----chhHHHHHHHHHHHHHHCCCEEEEec----CCC---------
Confidence 34456677765432 2458998865321 34567788888888877763222111 110
Q ss_pred ecccchHHHHHHHHHHHcccCCCcEEEccCCCCCchhhHHhhhccCCCeEEEc
Q 007192 148 FSLQSRDLIADSIETVMSAQWYDANISIPGCDKNMPGTIMAMGRLNRPGIMVY 200 (613)
Q Consensus 148 ysL~sRelIAdsiE~~~~a~~~Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~ 200 (613)
+.+...+.++.+ ..+.+||+|+.+ |+.. +-.+-.+.+.++|.|++.
T Consensus 104 ----~~~~~~~~~~~~-~~~~vdgiI~~~-~~~~-~~~~~~l~~~~iPvV~~~ 149 (331)
T PRK14987 104 ----KPEMEQERLESM-LSWNIDGLILTE-RTHT-PRTLKMIEVAGIPVVELM 149 (331)
T ss_pred ----CHHHHHHHHHHH-HhcCCCEEEEcC-CCCC-HHHHHHHHhCCCCEEEEe
Confidence 111122334554 468899999974 5433 444444567899999874
No 69
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=35.52 E-value=32 Score=26.74 Aligned_cols=20 Identities=25% Similarity=0.529 Sum_probs=17.3
Q ss_pred HHhHHHHHHHhCCCCChHHH
Q 007192 330 VLHLIAIARSVGLELSIDEF 349 (613)
Q Consensus 330 vLHL~AIA~eagi~ltl~df 349 (613)
.=.+++||++.|.+||.+||
T Consensus 29 ~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 29 PEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred HHHHHHHHHHcCCCCCHHHh
Confidence 34678999999999999987
No 70
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=34.35 E-value=1.1e+02 Score=37.05 Aligned_cols=88 Identities=18% Similarity=0.242 Sum_probs=57.6
Q ss_pred eEEeeEEEecCHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCCcchHHHHHhCCCCCeeEEEcCCCCCCCCC----
Q 007192 457 YFSGPALVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSH---- 532 (613)
Q Consensus 457 ~f~GpA~VFdseeda~~aI~~g~I~~~GdVvVIRyeGPkGgPGMpEml~~t~al~g~Gl~~~VALITDGRfSGas~---- 532 (613)
..+||++|..+.+|+. ++.+ |+|+|.+.-.|. ++ ..+ .+-.++||+.= +-+||
T Consensus 366 ~~~G~v~v~~~~~~~~------~~~~-g~ILV~~~~~p~-------~~---~~l-----~~~~givt~~G-g~tSH~Ail 422 (795)
T PRK06464 366 IGSGKVRVILDISEMD------KVQP-GDVLVTDMTDPD-------WE---PVM-----KRASAIVTNRG-GRTCHAAII 422 (795)
T ss_pred ceeeEEEEeCCHHHHH------hcCC-CeEEEECCCCHH-------HH---HHH-----HhheEEEEcCC-CCcchHHHH
Confidence 3579999999988862 5677 999999988774 22 122 23456777621 11122
Q ss_pred ----Cc-ceEEecccccCCCCeEEeecCCEEEE---ecCCCEEEEecCH
Q 007192 533 ----GF-VVGHVCPEAQDGGPIGLIQNGDIINI---DVQKRRIDVQLTD 573 (613)
Q Consensus 533 ----G~-~IGHVsPEAa~GGpIAlV~dGD~I~I---Di~~r~L~l~v~~ 573 (613)
|+ +|..+ ++-.-.+++||.|+| |..++.|-..-++
T Consensus 423 AR~lgIPavvg~------~~~~~~l~~G~~v~v~~~Dg~~G~v~~~~~~ 465 (795)
T PRK06464 423 ARELGIPAVVGT------GNATEVLKDGQEVTVSCAEGDTGYVYEGLLE 465 (795)
T ss_pred HHHcCCCEEEcc------CcccceecCCCEEEEEeccCCCcEEEeCCch
Confidence 22 22221 234567999999999 9999999886554
No 71
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=32.99 E-value=1e+02 Score=30.05 Aligned_cols=87 Identities=14% Similarity=0.085 Sum_probs=56.8
Q ss_pred CCCeEEEEe-cCCCccccccchHHHHHHHHHHHHHcCCc---eeEEeccccCcccccCccCceecccchHHHHHHHHHHH
Q 007192 89 SKPQVGISS-VWYEGNTCNMHLLRLSEAVKRGVEEAGMV---GFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVM 164 (613)
Q Consensus 89 ~kP~IgI~n-s~~e~~Pch~hl~~la~~Vk~gI~~aGG~---p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~ 164 (613)
+.+.|+|+. .||+. --+.|-+...+.+.+.|.. -..|.+|+.-| ||. .+..++
T Consensus 11 ~~~riaIV~s~~n~~-----i~~~l~~ga~~~l~~~gv~~~~i~v~~VPGa~E------------iP~------a~~~l~ 67 (154)
T PRK00061 11 KGLRIGIVVARFNDF-----ITDALLEGALDALKRHGVSEENIDVVRVPGAFE------------IPL------AAKKLA 67 (154)
T ss_pred CCCEEEEEEecCcHH-----HHHHHHHHHHHHHHHcCCCccceEEEECCCHHH------------HHH------HHHHHH
Confidence 457888765 56665 4567777788888888843 34445555433 332 234445
Q ss_pred cccCCCcEEEccC------------CCCCchhhHHhhhccCCCeEE
Q 007192 165 SAQWYDANISIPG------------CDKNMPGTIMAMGRLNRPGIM 198 (613)
Q Consensus 165 ~a~~~Dg~V~l~g------------CDK~vPG~lMaaaRlniPsi~ 198 (613)
+...|||+|.|+- |+-..=|.+--.+..++|.+|
T Consensus 68 ~~~~~DavIalG~VIrG~T~H~e~V~~~v~~gl~~v~l~~~~PV~~ 113 (154)
T PRK00061 68 ESGKYDAVIALGAVIRGETPHFDYVANEVAKGLADVSLETGVPVGF 113 (154)
T ss_pred HcCCCCEEEEEeeEEcCCCchHHHHHHHHHHHHHHHHhccCCCEEE
Confidence 6678999999974 444455666666778899888
No 72
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=31.82 E-value=4.5e+02 Score=24.93 Aligned_cols=88 Identities=13% Similarity=0.158 Sum_probs=53.1
Q ss_pred EEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCCCcE
Q 007192 93 VGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDAN 172 (613)
Q Consensus 93 IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~Dg~ 172 (613)
||++.+++ -+....++.+.+++...+.| +-+++ .. + .. ..+-....++.+++. .+||+
T Consensus 2 ig~v~~~~----~~~~~~~~~~g~~~~~~~~g-~~l~~--~~--~---~~---------~~~~~~~~~~~~~~~-~~d~i 59 (264)
T cd01537 2 IGVLVPDL----DNPFFAQVLKGIEEAAKAAG-YQVLL--AN--S---QN---------DAEKQLSALENLIAR-GVDGI 59 (264)
T ss_pred eEEEEcCC----CChHHHHHHHHHHHHHHHcC-CeEEE--Ee--C---CC---------CHHHHHHHHHHHHHc-CCCEE
Confidence 78887765 24456777777777777754 22222 10 1 00 124556666776654 79999
Q ss_pred EEccCCCCCchhhHHhhhccCCCeEEEccCC
Q 007192 173 ISIPGCDKNMPGTIMAMGRLNRPGIMVYGGT 203 (613)
Q Consensus 173 V~l~gCDK~vPG~lMaaaRlniPsi~v~gGp 203 (613)
|+. +|+-...-++=-+...++|.|++...+
T Consensus 60 i~~-~~~~~~~~~~~~l~~~~ip~v~~~~~~ 89 (264)
T cd01537 60 IIA-PSDLTAPTIVKLARKAGIPVVLVDRDI 89 (264)
T ss_pred EEe-cCCCcchhHHHHhhhcCCCEEEeccCC
Confidence 985 576554442323346789999987665
No 73
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=31.68 E-value=5.6e+02 Score=26.34 Aligned_cols=105 Identities=11% Similarity=0.096 Sum_probs=62.5
Q ss_pred HHHHHhCCCCcCcC-------CCCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCce
Q 007192 75 QAILHGVGLSEADM-------SKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMC 147 (613)
Q Consensus 75 ra~l~a~G~~ded~-------~kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ 147 (613)
+...+.+||...-. +.-.||++...++ +..+.++.+.+.+...+.|-..+.+.+ +
T Consensus 37 ~~~a~elgY~pn~~a~~l~~~~~~~i~vi~~~~~----~~~~~~~~~gi~~~~~~~g~~~~~~~~----~---------- 98 (341)
T PRK10703 37 WAAIKELHYSPSAVARSLKVNHTKSIGLLATSSE----APYFAEIIEAVEKNCYQKGYTLILCNA----W---------- 98 (341)
T ss_pred HHHHHHHCCCcCHHHHHHhhCCCCeEEEEeCCCC----CchHHHHHHHHHHHHHHCCCEEEEEeC----C----------
Confidence 45566777776542 2358998865432 456777888888888888744333221 1
Q ss_pred ecccchHHHHHHHHHHHcccCCCcEEEccCCCCCchhhHHhhhc-cCCCeEEEccCC
Q 007192 148 FSLQSRDLIADSIETVMSAQWYDANISIPGCDKNMPGTIMAMGR-LNRPGIMVYGGT 203 (613)
Q Consensus 148 ysL~sRelIAdsiE~~~~a~~~Dg~V~l~gCDK~vPG~lMaaaR-lniPsi~v~gGp 203 (613)
+ +-+-..+.++.+ ..+.+||+|+.+. + ..+..+=-+.. .|+|.|++--++
T Consensus 99 ~---~~~~~~~~i~~l-~~~~vdgiii~~~-~-~~~~~~~~l~~~~~iPvV~~d~~~ 149 (341)
T PRK10703 99 N---NLEKQRAYLSML-AQKRVDGLLVMCS-E-YPEPLLAMLEEYRHIPMVVMDWGE 149 (341)
T ss_pred C---CHHHHHHHHHHH-HHcCCCEEEEecC-C-CCHHHHHHHHhcCCCCEEEEeccc
Confidence 0 123334555653 5578999998764 2 23333333345 689999986443
No 74
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=31.45 E-value=3.6e+02 Score=26.08 Aligned_cols=74 Identities=11% Similarity=0.064 Sum_probs=45.1
Q ss_pred ccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCCCcEEEccCCCCCchhh
Q 007192 106 NMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDANISIPGCDKNMPGT 185 (613)
Q Consensus 106 h~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~Dg~V~l~gCDK~vPG~ 185 (613)
|-.+.++.+.+++..++.|-.-+. +|. . ++ .+.-...++ .+..+.+||+++.+ |+...+
T Consensus 11 ~~~~~~~~~~i~~~~~~~g~~~~~------~~~--~------~~---~~~~~~~~~-~~~~~~vdgiii~~-~~~~~~-- 69 (267)
T cd06284 11 NPFFSEILKGIEDEAREAGYGVLL------GDT--R------SD---PEREQEYLD-LLRRKQADGIILLD-GSLPPT-- 69 (267)
T ss_pred CccHHHHHHHHHHHHHHcCCeEEE------ecC--C------CC---hHHHHHHHH-HHHHcCCCEEEEec-CCCCHH--
Confidence 557888999999999998743321 121 0 11 122223344 46677899999965 432222
Q ss_pred HHhhhccCCCeEEEc
Q 007192 186 IMAMGRLNRPGIMVY 200 (613)
Q Consensus 186 lMaaaRlniPsi~v~ 200 (613)
+..+...++|.|++.
T Consensus 70 ~~~~~~~~ipvv~~~ 84 (267)
T cd06284 70 ALTALAKLPPIVQAC 84 (267)
T ss_pred HHHHHhcCCCEEEEe
Confidence 334445699999884
No 75
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=31.26 E-value=3.1e+02 Score=26.60 Aligned_cols=78 Identities=18% Similarity=0.210 Sum_probs=50.2
Q ss_pred ccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCCCcEEEccCCCCCchhh
Q 007192 106 NMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDANISIPGCDKNMPGT 185 (613)
Q Consensus 106 h~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~Dg~V~l~gCDK~vPG~ 185 (613)
+-.+.++.+.+++...+.| +-+.+ ++. .. +.+-..+.++.+++ +.+||+|+.+.+++..+..
T Consensus 11 ~~~~~~~~~~i~~~~~~~g-~~v~~-----~~~--~~---------~~~~~~~~~~~~~~-~~~dgii~~~~~~~~~~~~ 72 (268)
T cd06323 11 NPFFVTLKDGAQKEAKELG-YELTV-----LDA--QN---------DAAKQLNDIEDLIT-RGVDAIIINPTDSDAVVPA 72 (268)
T ss_pred CHHHHHHHHHHHHHHHHcC-ceEEe-----cCC--CC---------CHHHHHHHHHHHHH-cCCCEEEEcCCChHHHHHH
Confidence 5567888888999888875 33332 111 00 12333455666544 5699999987655555666
Q ss_pred HHhhhccCCCeEEEcc
Q 007192 186 IMAMGRLNRPGIMVYG 201 (613)
Q Consensus 186 lMaaaRlniPsi~v~g 201 (613)
+--+.+.++|.|++-.
T Consensus 73 l~~l~~~~ipvv~~~~ 88 (268)
T cd06323 73 VKAANEAGIPVFTIDR 88 (268)
T ss_pred HHHHHHCCCcEEEEcc
Confidence 6666788999999843
No 76
>PRK10991 fucI L-fucose isomerase; Provisional
Probab=30.73 E-value=9.9e+02 Score=28.50 Aligned_cols=99 Identities=20% Similarity=0.294 Sum_probs=61.7
Q ss_pred CCCeEEEEecCCCcccc--ccchHH--------HHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHH
Q 007192 89 SKPQVGISSVWYEGNTC--NMHLLR--------LSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIAD 158 (613)
Q Consensus 89 ~kP~IgI~ns~~e~~Pc--h~hl~~--------la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAd 158 (613)
++|.|||..+ +|.-.. |-.|.+ .++.+.+.++-+-|.|+|.-+. | +++-+.--|.
T Consensus 3 ~~p~igirp~-iDgR~~~vre~le~~tm~mak~~~~~~~~~l~~~~g~~ve~via---d-----------~~I~~~~eA~ 67 (588)
T PRK10991 3 SLPKIGIRPT-IDGRRMGVRESLEEQTMNMAKATAALITENLRHACGEPVECVIA---D-----------TCIGGVAEAA 67 (588)
T ss_pred CCCeEEEEec-ccCcccchhhhHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEeC---c-----------cccCCHHHHH
Confidence 4799999864 455443 333433 4444455555578999886332 2 1233334455
Q ss_pred HHHHHHcccCCCcEEEccCC----------CCCch------------hh-----HH-hhhccCCCeEEEccC
Q 007192 159 SIETVMSAQWYDANISIPGC----------DKNMP------------GT-----IM-AMGRLNRPGIMVYGG 202 (613)
Q Consensus 159 siE~~~~a~~~Dg~V~l~gC----------DK~vP------------G~-----lM-aaaRlniPsi~v~gG 202 (613)
.+..-++....|++|++..| +..+| |. .+ +..+.++|.-.+||=
T Consensus 68 ~~aekFk~e~Vd~~I~vt~cw~fG~Et~d~~~~~PvllWg~~dperPGav~L~A~laa~~Q~Gip~~~IyGh 139 (588)
T PRK10991 68 ACEEKFSSENVGLTITVTPCWCYGSETIDMDPTRPKAIWGFNGTERPGAVYLAAALAAHSQKGIPAFSIYGH 139 (588)
T ss_pred HHHHHHhhcCCCEEEEecCcccchhHHHhcCCCCCEEEeCCCCCCCCcHHHHHHHHHHHHhcCCCeEEEeCC
Confidence 56666778889999999999 44433 32 12 235889999999973
No 77
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=30.49 E-value=3.5e+02 Score=26.65 Aligned_cols=85 Identities=14% Similarity=0.017 Sum_probs=49.9
Q ss_pred EEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCCCcE
Q 007192 93 VGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDAN 172 (613)
Q Consensus 93 IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~Dg~ 172 (613)
||++..++ |-.+.++...+.+..++.| .-+.+.. + +--+.+.-.+.++. +..+..||+
T Consensus 2 i~~v~~~~-----~~~~~~~~~gi~~~~~~~g-~~~~~~~----~-----------~~~~~~~~~~~i~~-l~~~~vDgi 59 (271)
T cd06314 2 IAVVTNGA-----SPFWKIAEAGVKAAGKELG-VDVEFVV----P-----------QQGTVNAQLRMLED-LIAEGVDGI 59 (271)
T ss_pred eEEEcCCC-----cHHHHHHHHHHHHHHHHcC-CeEEEeC----C-----------CCCCHHHHHHHHHH-HHhcCCCEE
Confidence 67775432 3457888888888888876 3333221 1 00122333445555 345789999
Q ss_pred EEccCCCCCchhhHHhhhccCCCeEEEc
Q 007192 173 ISIPGCDKNMPGTIMAMGRLNRPGIMVY 200 (613)
Q Consensus 173 V~l~gCDK~vPG~lMaaaRlniPsi~v~ 200 (613)
|+.+.-.+...-.+--+.+ ++|.|++-
T Consensus 60 Ii~~~~~~~~~~~l~~~~~-~ipvV~~~ 86 (271)
T cd06314 60 AISPIDPKAVIPALNKAAA-GIKLITTD 86 (271)
T ss_pred EEecCChhHhHHHHHHHhc-CCCEEEec
Confidence 9987432323344444556 99988873
No 78
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=30.34 E-value=3.6e+02 Score=26.51 Aligned_cols=78 Identities=15% Similarity=0.113 Sum_probs=46.7
Q ss_pred ccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCCCcEEEccCCC-CCchh
Q 007192 106 NMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDANISIPGCD-KNMPG 184 (613)
Q Consensus 106 h~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~Dg~V~l~gCD-K~vPG 184 (613)
+-.+.++.+.+++..++.|-....+.+ | ... +.+.....+|.+++ +.+||+|+.+ ++ ..+.-
T Consensus 11 ~~~~~~~~~gi~~~~~~~g~~~~~~~~----~--~~~---------~~~~~~~~i~~l~~-~~vdgiIi~~-~~~~~~~~ 73 (275)
T cd06320 11 NEFWRSLKEGYENEAKKLGVSVDIQAA----P--SEG---------DQQGQLSIAENMIN-KGYKGLLFSP-ISDVNLVP 73 (275)
T ss_pred CHHHHHHHHHHHHHHHHhCCeEEEEcc----C--CCC---------CHHHHHHHHHHHHH-hCCCEEEECC-CChHHhHH
Confidence 345788888999998887643322221 1 111 12333455666544 4789998754 54 33334
Q ss_pred hHHhhhccCCCeEEEc
Q 007192 185 TIMAMGRLNRPGIMVY 200 (613)
Q Consensus 185 ~lMaaaRlniPsi~v~ 200 (613)
.+-.+.+.++|.|++-
T Consensus 74 ~~~~~~~~~iPvV~~~ 89 (275)
T cd06320 74 AVERAKKKGIPVVNVN 89 (275)
T ss_pred HHHHHHHCCCeEEEEC
Confidence 5555678899999874
No 79
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=30.29 E-value=3.2e+02 Score=26.40 Aligned_cols=92 Identities=16% Similarity=0.074 Sum_probs=52.0
Q ss_pred EEEEecCCCccccccchHHHHHHHHHHHHH---cC---CceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcc
Q 007192 93 VGISSVWYEGNTCNMHLLRLSEAVKRGVEE---AG---MVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSA 166 (613)
Q Consensus 93 IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~---aG---G~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a 166 (613)
||++...+. |.+.+..++.+.++.++.+ .| |..+++-+ +|.- + +-+.....++.+++.
T Consensus 2 ig~~~p~sg--~~~~~~~~~~~g~~~a~~~~n~~gg~~g~~v~~~~---~d~~--~---------~~~~~~~~~~~l~~~ 65 (298)
T cd06268 2 IGVLLPLSG--PLAALGEPVRNGAELAVEEINAAGGILGRKIELVV---EDTQ--G---------DPEAAAAAARELVDD 65 (298)
T ss_pred eeeeecCcC--chhhcChhHHHHHHHHHHHHHhcCCCCCeEEEEEE---ecCC--C---------CHHHHHHHHHHHHhC
Confidence 777777764 4555666666666666655 33 34444433 2321 1 234455556666544
Q ss_pred cCCCcEEEccCCCCCchhhHHhhhccCCCeEEEccC
Q 007192 167 QWYDANISIPGCDKNMPGTIMAMGRLNRPGIMVYGG 202 (613)
Q Consensus 167 ~~~Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~gG 202 (613)
..|++|. +.|........=-+.+.|||.|.....
T Consensus 66 -~v~~iig-~~~~~~~~~~~~~~~~~~ip~i~~~~~ 99 (298)
T cd06268 66 -GVDAVIG-PLSSGVALAAAPVAEEAGVPLISPGAT 99 (298)
T ss_pred -CceEEEc-CCcchhHHhhHHHHHhCCCcEEccCCC
Confidence 6787653 445554444444456789998876543
No 80
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=30.07 E-value=3.9e+02 Score=26.14 Aligned_cols=88 Identities=10% Similarity=0.105 Sum_probs=51.7
Q ss_pred EEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCCCcE
Q 007192 93 VGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDAN 172 (613)
Q Consensus 93 IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~Dg~ 172 (613)
|||+-. ++ .|-.+.++.+.+++...+.|=. +.+ ...+. . -+-+-..+.++.+++ +.+||+
T Consensus 2 Igvi~~--~~--~~~~~~~~~~g~~~~~~~~g~~-~~~--~~~~~---~---------~~~~~~~~~i~~l~~-~~vdgv 61 (273)
T cd06310 2 IALVPK--GT--TSDFWQAVKAGAEAAAKELGVK-VTF--QGPAS---E---------TDVAGQVNLLENAIA-RGPDAI 61 (273)
T ss_pred eEEEec--CC--CcHHHHHHHHHHHHHHHHcCCE-EEE--ecCcc---C---------CCHHHHHHHHHHHHH-hCCCEE
Confidence 676643 22 3556788888888888887622 221 11100 0 022334455666544 579999
Q ss_pred EEccCCCCCc-hhhHHhhhccCCCeEEEcc
Q 007192 173 ISIPGCDKNM-PGTIMAMGRLNRPGIMVYG 201 (613)
Q Consensus 173 V~l~gCDK~v-PG~lMaaaRlniPsi~v~g 201 (613)
|+. +++... ..++-.+.+.++|.|++-.
T Consensus 62 ii~-~~~~~~~~~~l~~~~~~~ipvV~~~~ 90 (273)
T cd06310 62 LLA-PTDAKALVPPLKEAKDAGIPVVLIDS 90 (273)
T ss_pred EEc-CCChhhhHHHHHHHHHCCCCEEEecC
Confidence 986 566432 4455555678999999853
No 81
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=30.00 E-value=3.9e+02 Score=26.65 Aligned_cols=86 Identities=15% Similarity=0.119 Sum_probs=53.6
Q ss_pred eEEEEecCCC-ccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCCC
Q 007192 92 QVGISSVWYE-GNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYD 170 (613)
Q Consensus 92 ~IgI~ns~~e-~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~D 170 (613)
+|||+..... ..--|-.+.++.+.+.+..++.|..-..+.+-. .+ +.++ .+....+|
T Consensus 1 ~igvi~p~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-----------------~~----~~~~-~~~~~~~d 58 (283)
T cd06279 1 AVGVVLTDSLSYAFSDPVASQFLAGVAEVLDAAGVNLLLLPASS-----------------ED----SDSA-LVVSALVD 58 (283)
T ss_pred CEEEEeCCcccccccCccHHHHHHHHHHHHHHCCCEEEEecCcc-----------------HH----HHHH-HHHhcCCC
Confidence 3676654311 111255678888899999999886665554311 01 2223 34567899
Q ss_pred cEEEccCCCCCchhhHHhhhccCCCeEEEcc
Q 007192 171 ANISIPGCDKNMPGTIMAMGRLNRPGIMVYG 201 (613)
Q Consensus 171 g~V~l~gCDK~vPG~lMaaaRlniPsi~v~g 201 (613)
|+|+. +|++..| .+--+...|+|.|++-.
T Consensus 59 giii~-~~~~~~~-~~~~~~~~~ipvV~~~~ 87 (283)
T cd06279 59 GFIVY-GVPRDDP-LVAALLRRGLPVVVVDQ 87 (283)
T ss_pred EEEEe-CCCCChH-HHHHHHHcCCCEEEEec
Confidence 99886 5677655 34455678999998843
No 82
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=29.70 E-value=3.7e+02 Score=26.40 Aligned_cols=90 Identities=19% Similarity=0.175 Sum_probs=53.2
Q ss_pred eEEEEecCCCccccccchHHHHHHHHHHHHHcC--CceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCC
Q 007192 92 QVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAG--MVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWY 169 (613)
Q Consensus 92 ~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aG--G~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~ 169 (613)
.||++..+. -|-.+.++.+.+.+...+.+ |...++-+. -+++ +-+.....++.++ .+.+
T Consensus 1 ~Ig~i~~~~----~~~~~~~~~~~i~~~~~~~~~~g~~~~l~i~-~~~~-------------~~~~~~~~~~~~~-~~~v 61 (272)
T cd06300 1 KIGLSNSYA----GNTWRAQMLDEFKAQAKELKKAGLISEFIVT-SADG-------------DVAQQIADIRNLI-AQGV 61 (272)
T ss_pred CeEEecccc----CChHHHHHHHHHHHHHHhhhccCCeeEEEEe-cCCC-------------CHHHHHHHHHHHH-HcCC
Confidence 378888653 24566778888888877762 332222221 1110 1233445555544 4599
Q ss_pred CcEEEccCCCCC-chhhHHhhhccCCCeEEEcc
Q 007192 170 DANISIPGCDKN-MPGTIMAMGRLNRPGIMVYG 201 (613)
Q Consensus 170 Dg~V~l~gCDK~-vPG~lMaaaRlniPsi~v~g 201 (613)
||+|+.+ +|.. .+..+--+...|+|.|++..
T Consensus 62 dgiIi~~-~~~~~~~~~l~~~~~~~iPvv~~~~ 93 (272)
T cd06300 62 DAIIINP-ASPTALNPVIEEACEAGIPVVSFDG 93 (272)
T ss_pred CEEEEeC-CChhhhHHHHHHHHHCCCeEEEEec
Confidence 9999965 5543 34455566678999999864
No 83
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=29.26 E-value=2.3e+02 Score=26.18 Aligned_cols=93 Identities=17% Similarity=0.172 Sum_probs=59.5
Q ss_pred eEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCCCc
Q 007192 92 QVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDA 171 (613)
Q Consensus 92 ~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~Dg 171 (613)
.|+|.++-+|+..+.. .+.-...+++-+++.|.......++ .| +.+.|++.++..++. +|-
T Consensus 1 ~v~ii~~G~El~~g~i-~d~n~~~l~~~l~~~G~~v~~~~~v--~D--------------d~~~i~~~i~~~~~~--~Dl 61 (133)
T cd00758 1 RVAIVTVSDELSQGQI-EDTNGPALEALLEDLGCEVIYAGVV--PD--------------DADSIRAALIEASRE--ADL 61 (133)
T ss_pred CEEEEEeCccccCCce-EEchHHHHHHHHHHCCCEEEEeeec--CC--------------CHHHHHHHHHHHHhc--CCE
Confidence 3789999999987654 2445667777788888765444333 34 478888888888765 787
Q ss_pred EEEccCC----CCCchhhHHhhhccCCCeEEEc--cCCCCCcc
Q 007192 172 NISIPGC----DKNMPGTIMAMGRLNRPGIMVY--GGTIKPGH 208 (613)
Q Consensus 172 ~V~l~gC----DK~vPG~lMaaaRlniPsi~v~--gGpm~~G~ 208 (613)
+|..+|= |..+|-.+-.+ . ...+. +.+|.||.
T Consensus 62 vittGG~g~g~~D~t~~ai~~~---g--~~~~~g~~~~~~pg~ 99 (133)
T cd00758 62 VLTTGGTGVGRRDVTPEALAEL---G--EREAHGKGVALAPGS 99 (133)
T ss_pred EEECCCCCCCCCcchHHHHHHh---c--CEEeccCcccccCCC
Confidence 7777653 23344433322 2 22333 77887775
No 84
>PRK06354 pyruvate kinase; Provisional
Probab=29.11 E-value=2.1e+02 Score=33.77 Aligned_cols=88 Identities=25% Similarity=0.339 Sum_probs=53.6
Q ss_pred eEEeeEEEecCHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCCcchHHHHHhCCCCCeeEEEcCCCCCCCCCCcce
Q 007192 457 YFSGPALVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSHGFVV 536 (613)
Q Consensus 457 ~f~GpA~VFdseeda~~aI~~g~I~~~GdVvVIRyeGPkGgPGMpEml~~t~al~g~Gl~~~VALITDGRfSGas~G~~I 536 (613)
..+||+++-.+.+++ .++.+ |+|+|.+.--|. ++.. + .+-.++||+-- |-+||...+
T Consensus 492 ~~~G~v~~~~~~~~~------~~~~~-~~ILV~~~~~P~-------~~~~---~-----~~~~GiVt~~G-g~tSH~AIv 548 (590)
T PRK06354 492 SVSGKARVAKTAAEV------AKVNE-GDILVTPSTDAD-------MIPA---I-----EKAAAIITEEG-GLTSHAAVV 548 (590)
T ss_pred cccceEEEeCChHhh------ccCCC-CeEEEeCCCCHH-------HHHh---H-----HhcEEEEEecC-CCcchHHHH
Confidence 357999999998874 35677 999999887763 2111 1 23466777722 223343222
Q ss_pred ---EEecccc-cCCCCeEEeecCCEEEEecCCCEEE
Q 007192 537 ---GHVCPEA-QDGGPIGLIQNGDIINIDVQKRRID 568 (613)
Q Consensus 537 ---GHVsPEA-a~GGpIAlV~dGD~I~IDi~~r~L~ 568 (613)
-++ |-= -.++....+++||.|.+|-.++.+-
T Consensus 549 AR~lgI-PaVvg~~~~~~~l~~G~~v~vDg~~G~V~ 583 (590)
T PRK06354 549 GLRLGI-PVIVGVKNATSLIKDGQIITVDAARGVVY 583 (590)
T ss_pred HHhcCC-CEEEeccchhhccCCCCEEEEECCCCEEE
Confidence 000 000 0123356789999999999999874
No 85
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=29.05 E-value=2.7e+02 Score=29.57 Aligned_cols=166 Identities=9% Similarity=0.027 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHcCCceeEE-eccccCc---------ccc--cCccCceecccchHHHHHHHHHHHcccCCCcEEEccC
Q 007192 110 LRLSEAVKRGVEEAGMVGFRF-NTIGVSD---------AIS--MGTKGMCFSLQSRDLIADSIETVMSAQWYDANISIPG 177 (613)
Q Consensus 110 ~~la~~Vk~gI~~aGG~p~ef-~tiav~D---------gia--~g~~GM~ysL~sRelIAdsiE~~~~a~~~Dg~V~l~g 177 (613)
+++.++.|+-..+.+++|+-. |.|.-+- -++ -+-.|+|+|- .-.-+...++. .. |.+.++.|
T Consensus 120 ~~l~~yf~~va~a~~~lPv~iYn~P~~tg~~l~~~~l~~L~~~pnivgiKdss-d~~~~~~~i~~----~~-~~~~v~~g 193 (309)
T cd00952 120 DTAVQFYRDVAEAVPEMAIAIYANPEAFKFDFPRAAWAELAQIPQVVAAKYLG-DIGALLSDLAA----VK-GRMRLLPL 193 (309)
T ss_pred HHHHHHHHHHHHhCCCCcEEEEcCchhcCCCCCHHHHHHHhcCCCEEEEEecC-ChHHHHHHHHH----cC-CCeEEeec
Confidence 788888877666665688765 5553210 011 2336788874 33333333322 12 46778889
Q ss_pred CCCCchhhHHhhhccCCCeEEEccC-CCCCcccCCcccceehHHHHHHHHhcCCCCHHH-----HHHHHHhcC-CCC--C
Q 007192 178 CDKNMPGTIMAMGRLNRPGIMVYGG-TIKPGHFQGHTYDIVSAFQVYGEYVSGSISDEQ-----RMNVVLNSC-PGA--G 248 (613)
Q Consensus 178 CDK~vPG~lMaaaRlniPsi~v~gG-pm~~G~~~g~~~~~~~~~e~~g~~~~G~i~~ee-----l~~~E~~ac-p~~--G 248 (613)
+|-.+|.+++++..++ . +++++ -+.| ....+.+.++.+|++.+.. +..+-...+ .+. +
T Consensus 194 ~d~~l~~~~~~~~~~~--G-~is~~~n~~P----------~~~~~l~~a~~~Gd~~~A~~lq~~~~~~~~~~~~~~~~~~ 260 (309)
T cd00952 194 EDDYYAAARLFPEEVT--A-FWSSGAACGP----------APVTALRDAVATGDWTDARALTDRMRWAAEPLFPRGDFSE 260 (309)
T ss_pred chhHHHHHHhcCccCc--c-EEEeccccCc----------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCcccc
Confidence 9999988877655221 1 11111 1112 2233444467888777532 122222111 111 1
Q ss_pred CCCccchHHHHHHHHHHhcCCCCC--CCCCCCCChhHHHHHHHHHHHHHH
Q 007192 249 ACGGMYTANTMASAIEAMGMSLPY--SSSIPAEDPLKLDECRLAGKYLLE 296 (613)
Q Consensus 249 sC~~mgTANTM~~~~EaLGm~LPG--sa~~pA~~~~r~~~a~~aG~~iv~ 296 (613)
.| .++...|-.+++.+|+.--| -......+.+.++-.|+.+|+-.+
T Consensus 261 ~~--~~~~~~~K~al~~~G~~~~g~~R~Pl~~~~~~~~~~~~~~~~~~~~ 308 (309)
T cd00952 261 FS--KYNIALEKARFDAAGYMRAGPARPPYNTAPEAYLEGARESGRRWAE 308 (309)
T ss_pred cc--ccchHHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHHhhhhhc
Confidence 12 12344578888988962122 223345677888888999988654
No 86
>PRK06565 amidase; Validated
Probab=28.91 E-value=93 Score=36.36 Aligned_cols=49 Identities=22% Similarity=0.203 Sum_probs=38.3
Q ss_pred HHHHHHcccCCCcEEEccCCCCCch--------------------hhHHhhhccCCCeEEEccCCCC-Cc
Q 007192 159 SIETVMSAQWYDANISIPGCDKNMP--------------------GTIMAMGRLNRPGIMVYGGTIK-PG 207 (613)
Q Consensus 159 siE~~~~a~~~Dg~V~l~gCDK~vP--------------------G~lMaaaRlniPsi~v~gGpm~-~G 207 (613)
++|..+..|.+|++|+-.-.|-..+ .-..+++.+++|+|-|+.|.|. .|
T Consensus 457 ~~e~~~~~~~lDalv~P~~~~~~~~~~~~~~~~~~~~~~~g~~~~ng~~a~~~~G~P~vtVP~G~~~~~G 526 (566)
T PRK06565 457 DLEDWMDGLGLDAVLFPTVADVGPADADVNPASADIAWSNGVWVANGNLAIRHLGVPTVTVPMGVMADIG 526 (566)
T ss_pred HHHHHHHhcCCCEEEeCCCCCCccccccccchhhhhccccCcccccchhhHHhcCCCeeEeeccccCCCC
Confidence 7888999999999999876665321 1235667899999999999994 44
No 87
>TIGR03282 methan_mark_13 putative methanogenesis marker 13 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This metal cluster-binding family is related to nitrogenase structural protein NifD and accessory protein NifE, among others.
Probab=28.85 E-value=1.4e+02 Score=33.13 Aligned_cols=205 Identities=19% Similarity=0.192 Sum_probs=112.1
Q ss_pred chHHHHHHHHHHHcccCCCcEEEccCCCCCchhh----HHhhhccCCCeEEEcc-CCCCCcccCCcccceehHHHHHHHH
Q 007192 152 SRDLIADSIETVMSAQWYDANISIPGCDKNMPGT----IMAMGRLNRPGIMVYG-GTIKPGHFQGHTYDIVSAFQVYGEY 226 (613)
Q Consensus 152 sRelIAdsiE~~~~a~~~Dg~V~l~gCDK~vPG~----lMaaaRlniPsi~v~g-Gpm~~G~~~g~~~~~~~~~e~~g~~ 226 (613)
.-+-+-+.|+...+.+..|.++++++|=--+=|- +..-++.++|.|.|.. |-+ |.+ ..+...++++ ..
T Consensus 59 GeeKL~eaI~ea~e~y~P~lI~VvTTCvseIIGDDIeaVvkE~~~giPVI~V~t~GGf--Gdn---~~G~~~aLeA--ii 131 (352)
T TIGR03282 59 ASEKLVKVIRYAEEKFKPELIGVVGTCASMIIGEDLKEAVDEADVDAEVIAVEVHAGF--GDN---TEGVIATLES--AA 131 (352)
T ss_pred cHHHHHHHHHHHHHhcCCCEEEEECCCchhhccCCHHHHHHHhCCCCCEEEEECCCCC--ccH---HHHHHHHHHH--HH
Confidence 3456677788888888999999999994332221 1112478899999954 444 432 2223334444 57
Q ss_pred hcCCCCHHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHhCCCCccc
Q 007192 227 VSGSISDEQRMNVVLNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRMDLKPRD 306 (613)
Q Consensus 227 ~~G~i~~eel~~~E~~acp~~GsC~~mgTANTM~~~~EaLGm~LPGsa~~pA~~~~r~~~a~~aG~~iv~lv~~~i~Prd 306 (613)
.+|-|+++|++.=.. .+--||..-- .-||+- +.=.-|.....| .++++++++++++|.|---
T Consensus 132 dq~~i~~~e~~rq~~----------~l~~at~~ek---~~g~a~-~~yi~p~~~d~~----~~~~~~l~~~~~~~~~~~~ 193 (352)
T TIGR03282 132 EAGIIDEDEVERQKE----------LLKKATEVEK---KRGMAK-REYIEPSYGDDK----HKVAKRLVDLIQEGKKVLA 193 (352)
T ss_pred HhCCcCHHHHHHHHH----------HHHHHHHHHH---Hhchhh-ccccCCCCCccH----HHHHHHHHHHHhcCCcEEE
Confidence 899999999875433 1111211110 123321 111223333444 3478899999999988777
Q ss_pred ccCHHHHHHHHHHHHhcCCCchhHHhHHHHHHHhCCCCChHHHHHhhCC--CCceeeccCC-Chh-hHHHHHhhCCHHHH
Q 007192 307 IITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDE--VPFLADLKPS-GKY-VMEDVHKIGGTPAV 382 (613)
Q Consensus 307 IlT~~af~NAi~v~~A~GGSTNavLHL~AIA~eagi~ltl~dfd~is~~--vP~l~~l~P~-G~~-~m~dl~~aGGvpaV 382 (613)
||+.|- |-|- +.|= +|++ ++++... +=+|+|+.++ |-- --.| ...+
T Consensus 194 vlnakk-et~y--~fad--------~~~~-------------~~~~~~~~~~~~~anld~~~gl~~ir~~------a~~i 243 (352)
T TIGR03282 194 ILNAKK-ETAY--LFAD--------PLLA-------------LNKLGPDNPPVNIANLDPNIGLPKVRRD------AEVI 243 (352)
T ss_pred EEecch-hHHH--hhhh--------hhHH-------------HhhhcccCCceEEeecCcccCcHHHHHH------HHHH
Confidence 776432 2221 1111 1222 2223322 2359999997 632 2222 2467
Q ss_pred HHHHHHCCC-CC-----CCCCcccCcCHHHHhccC
Q 007192 383 IRYLLELGF-LD-----GDCMTVTGKTLAENAKTF 411 (613)
Q Consensus 383 lk~L~~~gl-L~-----~d~lTVtGkTl~e~l~~~ 411 (613)
+++|.+.|+ +| +|---+||.-..|.|++.
T Consensus 244 ~~~~~~~g~~~~~i~g~ldey~~~g~~~~~~~~~~ 278 (352)
T TIGR03282 244 LSDFDATGLEYDYITGGLDEYPVTGEKAAEIIEDE 278 (352)
T ss_pred HHHHHhcCCcceeeecccccccccHHHHHHHHHhc
Confidence 888877663 12 233445565555555543
No 88
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=28.83 E-value=4.7e+02 Score=25.57 Aligned_cols=77 Identities=9% Similarity=0.021 Sum_probs=47.7
Q ss_pred ccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCCCcEEEccCCCC-Cchh
Q 007192 106 NMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDANISIPGCDK-NMPG 184 (613)
Q Consensus 106 h~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~Dg~V~l~gCDK-~vPG 184 (613)
|.-+.++.+.+++..++.|-....++. - . +.+--.+.++.++ .+.+||+|+. +++. ..+.
T Consensus 11 ~~~~~~~~~~i~~~~~~~g~~~~~~~~------~--~---------~~~~~~~~i~~~~-~~~~dgiii~-~~~~~~~~~ 71 (277)
T cd06319 11 IPFWQIMGRGVKSKAKALGYDAVELSA------E--N---------SAKKELENLRTAI-DKGVSGIIIS-PTNSSAAVT 71 (277)
T ss_pred chHHHHHHHHHHHHHHhcCCeEEEecC------C--C---------CHHHHHHHHHHHH-hcCCCEEEEc-CCchhhhHH
Confidence 345778888888888888744433322 1 1 1233335566655 4789999875 4553 2445
Q ss_pred hHHhhhccCCCeEEEcc
Q 007192 185 TIMAMGRLNRPGIMVYG 201 (613)
Q Consensus 185 ~lMaaaRlniPsi~v~g 201 (613)
++=-+.+.++|.|++--
T Consensus 72 ~l~~~~~~~ipvV~~~~ 88 (277)
T cd06319 72 LLKLAAQAKIPVVIADI 88 (277)
T ss_pred HHHHHHHCCCCEEEEec
Confidence 55556678999998743
No 89
>PF11720 Inhibitor_I78: Peptidase inhibitor I78 family; InterPro: IPR021719 This family includes Aspergillus elastase inhibitor and belongs to MEROPS peptidase inhibitor family I78.
Probab=28.49 E-value=33 Score=28.21 Aligned_cols=29 Identities=24% Similarity=0.611 Sum_probs=26.6
Q ss_pred CCCeEEeecCCEEEEecCCCEEEEecCHH
Q 007192 546 GGPIGLIQNGDIINIDVQKRRIDVQLTDE 574 (613)
Q Consensus 546 GGpIAlV~dGD~I~IDi~~r~L~l~v~~e 574 (613)
..+.-.|+.||.++-|....||++.++++
T Consensus 23 ~~~~Rvi~Pg~~vTmDyr~dRLnv~~D~~ 51 (60)
T PF11720_consen 23 AETVRVIRPGDAVTMDYRPDRLNVEVDDD 51 (60)
T ss_pred ccceEEeCCCCcCcccCCCCcEEEEECCC
Confidence 67888999999999999999999999864
No 90
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=28.46 E-value=6e+02 Score=26.06 Aligned_cols=104 Identities=11% Similarity=0.114 Sum_probs=61.5
Q ss_pred HHHHHhCCCCcCcC-------CCCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCce
Q 007192 75 QAILHGVGLSEADM-------SKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMC 147 (613)
Q Consensus 75 ra~l~a~G~~ded~-------~kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ 147 (613)
+...+.+||..... +...||++-... -|-.+.++.+.+.+...+.|-..+.+. ++
T Consensus 42 ~~~a~elgY~p~~~a~~l~~~~~~~Igvv~~~~----~~~~~~~i~~gi~~~a~~~g~~~~~~~----~~---------- 103 (342)
T PRK10014 42 NQAIEELGFVRNRQASALRGGQSGVIGLIVRDL----SAPFYAELTAGLTEALEAQGRMVFLLQ----GG---------- 103 (342)
T ss_pred HHHHHHhCCCcCHHHHhhccCCCCEEEEEeCCC----ccchHHHHHHHHHHHHHHcCCEEEEEe----CC----------
Confidence 34456667766433 235799886432 134567778888888887774333221 11
Q ss_pred ecccchHHHHHHHHHHHcccCCCcEEEccCCCCCchhhHHhhhccCCCeEEEcc
Q 007192 148 FSLQSRDLIADSIETVMSAQWYDANISIPGCDKNMPGTIMAMGRLNRPGIMVYG 201 (613)
Q Consensus 148 ysL~sRelIAdsiE~~~~a~~~Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~g 201 (613)
.+-+.....++.+ ..+.+||+|+.+. ++..+-.+=-+.+.++|.|++-.
T Consensus 104 ---~~~~~~~~~~~~l-~~~~vdgiIi~~~-~~~~~~~~~~l~~~~iPvV~~~~ 152 (342)
T PRK10014 104 ---KDGEQLAQRFSTL-LNQGVDGVVIAGA-AGSSDDLREMAEEKGIPVVFASR 152 (342)
T ss_pred ---CCHHHHHHHHHHH-HhCCCCEEEEeCC-CCCcHHHHHHHhhcCCCEEEEec
Confidence 0123334555554 4567999999764 55434444345677999999854
No 91
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=27.53 E-value=1.4e+02 Score=32.61 Aligned_cols=83 Identities=13% Similarity=0.196 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCCCcEEEccCCCCCchhhHHh
Q 007192 109 LLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDANISIPGCDKNMPGTIMA 188 (613)
Q Consensus 109 l~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~Dg~V~l~gCDK~vPG~lMa 188 (613)
++.-++..++-+++.|+.||.++-=+ +..--++-|-=...|+...+-+ ...||-+|+.+|---|.-|++.+
T Consensus 130 ~~~~~~~~~e~~~~~g~kpyvIp~GG-----~~~~g~lGyv~~a~Ei~~Q~~~----~~~fD~vVva~gs~gT~AGl~~g 200 (323)
T COG2515 130 INASAEELAEEVRKQGGKPYVIPEGG-----SSPLGALGYVRLALEIAEQAEQ----LLKFDSVVVAPGSGGTHAGLLVG 200 (323)
T ss_pred hchhhHHHHHHHHhcCCCCcEeccCC-----cCccccccHHHHHHHHHHHHhh----ccCCCEEEEeCCCcchHHHHHHH
Confidence 45667777888888899999986533 4444455565556666544322 27899999999999999999999
Q ss_pred hhcc--CCCeEEEc
Q 007192 189 MGRL--NRPGIMVY 200 (613)
Q Consensus 189 aaRl--niPsi~v~ 200 (613)
.+.+ +++.|=+.
T Consensus 201 ~~~~~~~~~ViG~~ 214 (323)
T COG2515 201 LAQLGPDVEVIGID 214 (323)
T ss_pred hhhccCCCceEEEe
Confidence 8876 46655444
No 92
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=27.33 E-value=6e+02 Score=24.86 Aligned_cols=87 Identities=16% Similarity=0.146 Sum_probs=53.7
Q ss_pred eEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCCCc
Q 007192 92 QVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDA 171 (613)
Q Consensus 92 ~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~Dg 171 (613)
.|||+-.-. -+-.+.++.+.+.+...+.|-..+.++ ++ -+.+.-...++...+ +.+||
T Consensus 1 ~Igvi~~~~----~~~~~~~~~~gi~~~~~~~g~~~~~~~----~~-------------~~~~~~~~~i~~l~~-~~vdg 58 (273)
T cd06292 1 LVGLLVPEL----SNPIFPAFAEAIEAALAQYGYTVLLCN----TY-------------RGGVSEADYVEDLLA-RGVRG 58 (273)
T ss_pred CEEEEeCCC----cCchHHHHHHHHHHHHHHCCCEEEEEe----CC-------------CChHHHHHHHHHHHH-cCCCE
Confidence 366665422 244678888888888888774433221 11 123444455666655 57999
Q ss_pred EEEccCC--CC-CchhhHHhhhccCCCeEEEc
Q 007192 172 NISIPGC--DK-NMPGTIMAMGRLNRPGIMVY 200 (613)
Q Consensus 172 ~V~l~gC--DK-~vPG~lMaaaRlniPsi~v~ 200 (613)
+++++.. |+ ..+-.+-.+.+.++|.|++-
T Consensus 59 iIi~~~~~~~~~~~~~~i~~~~~~~ipvV~i~ 90 (273)
T cd06292 59 VVFISSLHADTHADHSHYERLAERGLPVVLVN 90 (273)
T ss_pred EEEeCCCCCcccchhHHHHHHHhCCCCEEEEc
Confidence 9998743 33 24445666778899999984
No 93
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=27.21 E-value=3.8e+02 Score=25.98 Aligned_cols=88 Identities=10% Similarity=0.052 Sum_probs=51.4
Q ss_pred EEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCCCcE
Q 007192 93 VGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDAN 172 (613)
Q Consensus 93 IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~Dg~ 172 (613)
|||+-.-.+...-|.-+.++.+.+++...+.|-....+.+ .|. -+ -...++.++..+.+||+
T Consensus 2 igvi~p~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~---~~~--------------~~-~~~~~~~~~~~~~vdgi 63 (268)
T cd06271 2 IGLVLPTGEREEGDPFFAEFLSGLSEALAEHGYDLVLLPV---DPD--------------ED-PLEVYRRLVESGLVDGV 63 (268)
T ss_pred eEEEeCCcccccCCccHHHHHHHHHHHHHHCCceEEEecC---CCc--------------HH-HHHHHHHHHHcCCCCEE
Confidence 6666432110122455677888888888888755444432 111 11 11345556667789999
Q ss_pred EEccCCCCCchhhHHhhhccCCCeEEEc
Q 007192 173 ISIPGCDKNMPGTIMAMGRLNRPGIMVY 200 (613)
Q Consensus 173 V~l~gCDK~vPG~lMaaaRlniPsi~v~ 200 (613)
|+.+ |+...+- +--+.+.++|.|++-
T Consensus 64 ii~~-~~~~~~~-~~~~~~~~ipvV~~~ 89 (268)
T cd06271 64 IISR-TRPDDPR-VALLLERGFPFVTHG 89 (268)
T ss_pred EEec-CCCCChH-HHHHHhcCCCEEEEC
Confidence 9864 5544443 344567899999873
No 94
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=26.59 E-value=5.6e+02 Score=24.53 Aligned_cols=88 Identities=13% Similarity=0.129 Sum_probs=50.5
Q ss_pred EEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCCCcE
Q 007192 93 VGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDAN 172 (613)
Q Consensus 93 IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~Dg~ 172 (613)
||++..-. -+.-+.++.+.+++...+.| +.+-+. -+++ +-+--...++.++.. .+||+
T Consensus 2 ig~i~p~~----~~~~~~~~~~~~~~~a~~~g---~~~~~~-~~~~-------------~~~~~~~~~~~l~~~-~vdgv 59 (267)
T cd01536 2 IGLVVPSL----NNPFWQAMNKGAEAAAKELG---VELIVL-DAQN-------------DVSKQIQQIEDLIAQ-GVDGI 59 (267)
T ss_pred EEEEeccc----cCHHHHHHHHHHHHHHHhcC---ceEEEE-CCCC-------------CHHHHHHHHHHHHHc-CCCEE
Confidence 56655321 12356778888888887755 222111 1110 112233556666555 78999
Q ss_pred EEccCCCCCchhhHHhhhccCCCeEEEccC
Q 007192 173 ISIPGCDKNMPGTIMAMGRLNRPGIMVYGG 202 (613)
Q Consensus 173 V~l~gCDK~vPG~lMaaaRlniPsi~v~gG 202 (613)
|+.+........++-.+.+.++|.|++...
T Consensus 60 i~~~~~~~~~~~~~~~l~~~~ip~V~~~~~ 89 (267)
T cd01536 60 IISPVDSAALTPALKKANAAGIPVVTVDSD 89 (267)
T ss_pred EEeCCCchhHHHHHHHHHHCCCcEEEecCC
Confidence 997654333334555567889999998653
No 95
>KOG1506 consensus S-adenosylmethionine synthetase [Coenzyme transport and metabolism]
Probab=26.24 E-value=26 Score=37.62 Aligned_cols=95 Identities=22% Similarity=0.351 Sum_probs=60.4
Q ss_pred ceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCCCc--EEEccCCCCCchhhHHhhhccCCCeEEEccCC
Q 007192 126 VGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDA--NISIPGCDKNMPGTIMAMGRLNRPGIMVYGGT 203 (613)
Q Consensus 126 ~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~Dg--~V~l~gCDK~vPG~lMaaaRlniPsi~v~gGp 203 (613)
+|....|+.++ +|-.+-....=.-+++..+-|+.++-++.+|- +.-| |--.-||.|||
T Consensus 184 vP~rVhtvviS---~QH~~~is~~~lr~~l~e~vik~viPa~~lDe~Tiyhl-----------------~PsGrFviGGP 243 (383)
T KOG1506|consen 184 VPLRVHTVVIS---TQHSEDITLDDLRAELKEKVIKPVIPAKYLDEKTIYHL-----------------NPSGRFVIGGP 243 (383)
T ss_pred eeeEEEEEEEe---cccCccccHHHHHHHHHHhhhhhcCcHhhcCccceEEe-----------------cCCccEEecCC
Confidence 44555555544 12222222223446777777887777777763 3333 33367999999
Q ss_pred CCCcccCCcccceehHHHHHHHHhcCCCCHHHHHHHHH
Q 007192 204 IKPGHFQGHTYDIVSAFQVYGEYVSGSISDEQRMNVVL 241 (613)
Q Consensus 204 m~~G~~~g~~~~~~~~~e~~g~~~~G~i~~eel~~~E~ 241 (613)
|--.-..|+|+ |.|.|-.||+..-|..|-.+...+.+
T Consensus 244 ~GDAGlTGRKI-IvDtYGGwgahGGGAFSGKD~tKVDR 280 (383)
T KOG1506|consen 244 QGDAGLTGRKI-IVDTYGGWGAHGGGAFSGKDPTKVDR 280 (383)
T ss_pred CcccccccceE-EEeccCcccccCCcccCCCCccccch
Confidence 96655668887 67889999988888777666555554
No 96
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=26.05 E-value=6.3e+02 Score=25.47 Aligned_cols=92 Identities=10% Similarity=0.122 Sum_probs=54.7
Q ss_pred cCCCCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcc
Q 007192 87 DMSKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSA 166 (613)
Q Consensus 87 d~~kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a 166 (613)
..++-.|||+.... -+..+.++.+.+++..++.|-....+.+ + . -+ +--..-+|.+ ..
T Consensus 23 ~~~~~~I~vi~~~~----~~~f~~~~~~~i~~~~~~~G~~~~~~~~----~----~-------d~--~~~~~~~~~l-~~ 80 (295)
T PRK10653 23 AMAKDTIALVVSTL----NNPFFVSLKDGAQKEADKLGYNLVVLDS----Q----N-------NP--AKELANVQDL-TV 80 (295)
T ss_pred cccCCeEEEEecCC----CChHHHHHHHHHHHHHHHcCCeEEEecC----C----C-------CH--HHHHHHHHHH-HH
Confidence 34567899876532 2446789999999999998844433321 0 0 01 1112333443 45
Q ss_pred cCCCcEEEccCCCCCchhhHHhhhccCCCeEEEc
Q 007192 167 QWYDANISIPGCDKNMPGTIMAMGRLNRPGIMVY 200 (613)
Q Consensus 167 ~~~Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~ 200 (613)
+.+||+|+.+.-+....-.+--+.+.++|.|++-
T Consensus 81 ~~~dgiii~~~~~~~~~~~l~~~~~~~ipvV~~~ 114 (295)
T PRK10653 81 RGTKILLINPTDSDAVGNAVKMANQANIPVITLD 114 (295)
T ss_pred cCCCEEEEcCCChHHHHHHHHHHHHCCCCEEEEc
Confidence 6899999765332333344445556799999985
No 97
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=25.59 E-value=3.4e+02 Score=25.74 Aligned_cols=66 Identities=18% Similarity=0.169 Sum_probs=45.5
Q ss_pred eEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCCCc
Q 007192 92 QVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDA 171 (613)
Q Consensus 92 ~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~Dg 171 (613)
.|+|+.+-+|+.++..- +.-...+++-+++.|.......+ +.| +.|.|.+.++...+....|-
T Consensus 2 ~~~ii~~~~e~~~g~i~-d~n~~~l~~~l~~~G~~v~~~~~--v~D--------------d~~~i~~~l~~~~~~~~~Dl 64 (152)
T cd00886 2 RAAVLTVSDTRSAGEAE-DRSGPALVELLEEAGHEVVAYEI--VPD--------------DKDEIREALIEWADEDGVDL 64 (152)
T ss_pred EEEEEEEcCcccCCCCc-cchHHHHHHHHHHcCCeeeeEEE--cCC--------------CHHHHHHHHHHHHhcCCCCE
Confidence 47899999999988743 45555678888899976544333 445 47888888888766435664
Q ss_pred EEE
Q 007192 172 NIS 174 (613)
Q Consensus 172 ~V~ 174 (613)
+|.
T Consensus 65 Vit 67 (152)
T cd00886 65 ILT 67 (152)
T ss_pred EEE
Confidence 443
No 98
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=25.56 E-value=6.3e+02 Score=24.93 Aligned_cols=84 Identities=15% Similarity=0.025 Sum_probs=52.0
Q ss_pred EEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCCCcE
Q 007192 93 VGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDAN 172 (613)
Q Consensus 93 IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~Dg~ 172 (613)
||++..-. .|-.+.++.+.+.+...+.|-..+.+.+ |. . .+. -..++..+..+..||+
T Consensus 2 Igvi~p~~----~~~~~~~~~~~i~~~~~~~gy~~~~~~~----~~---~----------~~~-~~~~~~~l~~~~vdgv 59 (269)
T cd06297 2 ISVLLPVV----ATEFYRRLLEGIEGALLEQRYDLALFPL----LS---L----------ARL-KRYLESTTLAYLTDGL 59 (269)
T ss_pred EEEEeCCC----cChhHHHHHHHHHHHHHHCCCEEEEEeC----CC---c----------HHH-HHHHHHHHHhcCCCEE
Confidence 67665422 2455788899999999998855554322 10 0 111 2445555668899999
Q ss_pred EEccCCCCCchhhHHhhhccCCCeEEEc
Q 007192 173 ISIPGCDKNMPGTIMAMGRLNRPGIMVY 200 (613)
Q Consensus 173 V~l~gCDK~vPG~lMaaaRlniPsi~v~ 200 (613)
|+.+ ++-. +-.+--+...|+|.|++-
T Consensus 60 i~~~-~~~~-~~~~~~l~~~~iPvv~~~ 85 (269)
T cd06297 60 LLAS-YDLT-ERLAERRLPTERPVVLVD 85 (269)
T ss_pred EEec-CccC-hHHHHHHhhcCCCEEEEc
Confidence 9975 5544 333344456799998883
No 99
>TIGR02369 trimeth_pyl trimethylamine:corrinoid methyltransferase. This model represents a distinct subfamily of pfam06253. All members here are trimethylamine:corrinoid methyltransferases that contain a critical pyrrolysine residue incorporated during translation via a special tRNA for a TAG (amber) codon. Known members so far are from the genus Methanosarcina. It is one of a suite of three non-homologous enzymes with a critical UAG-encoded pyrrolysine residue in these species (along with dimethylamine methyltransferase and monomethylamine methyltransferase). It demethylates trimethylamine, leaving dimethylamine, and methylates the prosthetic group of its small cognate corrinoid protein, MttC. The methyl group is then transferred by methylcorrinoid:coenzyme M methyltransferase to coenzyme M. Note that the pyrrolysine residue is variously translated as K or X, or as a stop codon that truncates the sequence.
Probab=24.91 E-value=3.2e+02 Score=31.63 Aligned_cols=128 Identities=15% Similarity=0.130 Sum_probs=79.0
Q ss_pred CCCchhhHHhhhccCCCeEEEc---cCCCCCcccCCccccee-hHHHHHHHHhcCCCCHHHHHHHHHhcCCCCCCCCccc
Q 007192 179 DKNMPGTIMAMGRLNRPGIMVY---GGTIKPGHFQGHTYDIV-SAFQVYGEYVSGSISDEQRMNVVLNSCPGAGACGGMY 254 (613)
Q Consensus 179 DK~vPG~lMaaaRlniPsi~v~---gGpm~~G~~~g~~~~~~-~~~e~~g~~~~G~i~~eel~~~E~~acp~~GsC~~mg 254 (613)
|..+=..||..+|.|+|.++.+ +|.|.|= ++. .+-+...+..+| .-+-+-..||+-.+-|-+
T Consensus 225 d~~~~~~l~~~a~~gqpv~v~p~~laGAtaPv-------T~AGalaq~~AE~Lag-------ivl~Qli~PGaPviyG~~ 290 (489)
T TIGR02369 225 SVNACQVIIKGARFGMPVNVLSMAMSGGSSPV-------YLAGTLVTHNAEVLAG-------ITLAQLTVPGAKVWYGSS 290 (489)
T ss_pred ChhHHHHHHHHHHcCCcEEecchhccCCCcch-------hHHHHHHHHHHHHHHH-------HHHHHhcCCCCcEEeCCC
Confidence 3444577899999999999876 4555553 222 344444444444 234455566666665555
Q ss_pred hHHH-HHHHHHHhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHH-----HhCCCCcccccCH-HHHHHHHHHHHhcCCCc
Q 007192 255 TANT-MASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLEL-----LRMDLKPRDIITK-KSLRNAMVIVMALGGST 327 (613)
Q Consensus 255 TANT-M~~~~EaLGm~LPGsa~~pA~~~~r~~~a~~aG~~iv~l-----v~~~i~PrdIlT~-~af~NAi~v~~A~GGST 327 (613)
|.|. |. |++..-.++|-..+...+|+..-.+ .--+++-+++.+- ..+|.++...+|.=+..
T Consensus 291 ~s~~dMr------------sGa~~~GtPE~~l~~~~~~QlAr~ygLP~rs~gg~tdsK~~D~QAg~E~~~sl~~a~laGa 358 (489)
T TIGR02369 291 TTTFDLK------------KGTAPVGSPELGLISAAVAKLAQFYGLPAFVAGTOADAKIPDNQAGHEKTMTCFLPALAGA 358 (489)
T ss_pred ccceecC------------CCCCCCCChHHHHHHHHHHHHHHHcCCCccccCCCcccCCcchHHHHHHHHHHHHHHhcCc
Confidence 5554 43 4455555666655444444433221 1245677888875 46899999999988889
Q ss_pred hhHHh
Q 007192 328 NAVLH 332 (613)
Q Consensus 328 NavLH 332 (613)
|.+.|
T Consensus 359 N~i~~ 363 (489)
T TIGR02369 359 NTIYG 363 (489)
T ss_pred cceec
Confidence 99887
No 100
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=24.86 E-value=4.4e+02 Score=25.99 Aligned_cols=79 Identities=11% Similarity=0.072 Sum_probs=49.9
Q ss_pred ccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCCCcEEEccCCC-CCchh
Q 007192 106 NMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDANISIPGCD-KNMPG 184 (613)
Q Consensus 106 h~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~Dg~V~l~gCD-K~vPG 184 (613)
|..+.++.+.+.+...+.|...+...+...++.- .+ -....++.+.+ ..||+|+.+ .+ +...-
T Consensus 11 ~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~------------~~-~~~~~i~~~~~--~vdgiii~~-~~~~~~~~ 74 (275)
T cd06307 11 NAFYRELAAALEAAAAAFPDARIRVRIHFVESFD------------PA-ALAAALLRLGA--RSDGVALVA-PDHPQVRA 74 (275)
T ss_pred ChHHHHHHHHHHHHHhhhhccCceEEEEEccCCC------------HH-HHHHHHHHHHh--cCCEEEEeC-CCcHHHHH
Confidence 5677889999999999999877666554333210 11 12344455444 899999875 33 22222
Q ss_pred hHHhhhccCCCeEEEc
Q 007192 185 TIMAMGRLNRPGIMVY 200 (613)
Q Consensus 185 ~lMaaaRlniPsi~v~ 200 (613)
.+=.+.+.++|.|++-
T Consensus 75 ~i~~~~~~~ipvV~~~ 90 (275)
T cd06307 75 AVARLAAAGVPVVTLV 90 (275)
T ss_pred HHHHHHHCCCcEEEEe
Confidence 4455567899988874
No 101
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=24.83 E-value=6.6e+02 Score=24.53 Aligned_cols=76 Identities=14% Similarity=0.080 Sum_probs=50.0
Q ss_pred ccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCCCcEEEccCCCCCchhh
Q 007192 106 NMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDANISIPGCDKNMPGT 185 (613)
Q Consensus 106 h~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~Dg~V~l~gCDK~vPG~ 185 (613)
|-.+.++.+.+++..++.|-....+.+ + +. . +.-...+|.+++ +.+||+|+.+ |+..-+-
T Consensus 11 ~~~~~~~~~g~~~~a~~~g~~~~~~~~----~----------~~-~--~~~~~~i~~~~~-~~vdgii~~~-~~~~~~~- 70 (268)
T cd06270 11 GPFFGPLLSGVESVARKAGKHLIITAG----H----------HS-A--EKEREAIEFLLE-RRCDALILHS-KALSDDE- 70 (268)
T ss_pred CcchHHHHHHHHHHHHHCCCEEEEEeC----C----------Cc-h--HHHHHHHHHHHH-cCCCEEEEec-CCCCHHH-
Confidence 457788999999999999865543321 1 01 1 222356676554 6799999975 6644332
Q ss_pred HHhhhccCCCeEEEcc
Q 007192 186 IMAMGRLNRPGIMVYG 201 (613)
Q Consensus 186 lMaaaRlniPsi~v~g 201 (613)
+-.+.+.++|.|++.-
T Consensus 71 ~~~~~~~~ipvV~~~~ 86 (268)
T cd06270 71 LIELAAQVPPLVLINR 86 (268)
T ss_pred HHHHhhCCCCEEEEec
Confidence 5556788999999853
No 102
>PF13490 zf-HC2: Putative zinc-finger; PDB: 2Z2S_F 2Q1Z_B 3HUG_T.
Probab=24.73 E-value=98 Score=22.26 Aligned_cols=25 Identities=20% Similarity=0.424 Sum_probs=19.3
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHh
Q 007192 218 SAFQVYGEYVSGSISDEQRMNVVLN 242 (613)
Q Consensus 218 ~~~e~~g~~~~G~i~~eel~~~E~~ 242 (613)
++.+.+..|..|+++.++...+|.+
T Consensus 3 ~~~~~l~~y~dg~L~~~~~~~~~~H 27 (36)
T PF13490_consen 3 EVRELLSAYLDGELSPEERARLEAH 27 (36)
T ss_dssp --HHHHHHHHCT-S-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 5678889999999999999999985
No 103
>COG3462 Predicted membrane protein [Function unknown]
Probab=24.65 E-value=59 Score=30.58 Aligned_cols=17 Identities=24% Similarity=0.579 Sum_probs=15.1
Q ss_pred HHhcCCCCHHHHHHHHH
Q 007192 225 EYVSGSISDEQRMNVVL 241 (613)
Q Consensus 225 ~~~~G~i~~eel~~~E~ 241 (613)
+|++|+|||||+..+-+
T Consensus 97 R~AkGEItEEEY~r~~~ 113 (117)
T COG3462 97 RYAKGEITEEEYRRIIR 113 (117)
T ss_pred HHhcCCCCHHHHHHHHH
Confidence 79999999999988755
No 104
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=23.93 E-value=6.6e+02 Score=24.25 Aligned_cols=83 Identities=14% Similarity=0.045 Sum_probs=48.0
Q ss_pred EEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCCCcE
Q 007192 93 VGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDAN 172 (613)
Q Consensus 93 IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~Dg~ 172 (613)
||++-...+ +..+.++.+.+.+..++.|-..+.+.+ +. ..+-....++.. ..+.+||+
T Consensus 2 Ig~i~~~~~----~~~~~~~~~gi~~~~~~~g~~~~~~~~----~~-------------~~~~~~~~~~~l-~~~~vdgi 59 (268)
T cd01575 2 VAVLVPSLS----NSVFADVLQGISDVLEAAGYQLLLGNT----GY-------------SPEREEELLRTL-LSRRPAGL 59 (268)
T ss_pred EEEEeCCCc----chhHHHHHHHHHHHHHHcCCEEEEecC----CC-------------CchhHHHHHHHH-HHcCCCEE
Confidence 566654322 345677778888888877643333221 10 112223444554 35779999
Q ss_pred EEccCCCCCchhhHHhhhccCCCeEEE
Q 007192 173 ISIPGCDKNMPGTIMAMGRLNRPGIMV 199 (613)
Q Consensus 173 V~l~gCDK~vPG~lMaaaRlniPsi~v 199 (613)
|+++. +.. ...+--+.+.|+|.|++
T Consensus 60 ii~~~-~~~-~~~~~~~~~~~ipvv~~ 84 (268)
T cd01575 60 ILTGL-EHT-ERTRQLLRAAGIPVVEI 84 (268)
T ss_pred EEeCC-CCC-HHHHHHHHhcCCCEEEE
Confidence 99874 433 33444456789999988
No 105
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=23.93 E-value=5.2e+02 Score=24.84 Aligned_cols=126 Identities=12% Similarity=0.057 Sum_probs=70.2
Q ss_pred HHHHHHHHHHcCCceeEEecccc-----CcccccCccCceecccchHHHHHHHH-HHHcccCCCcEEEccCCCCCchhhH
Q 007192 113 SEAVKRGVEEAGMVGFRFNTIGV-----SDAISMGTKGMCFSLQSRDLIADSIE-TVMSAQWYDANISIPGCDKNMPGTI 186 (613)
Q Consensus 113 a~~Vk~gI~~aGG~p~ef~tiav-----~Dgia~g~~GM~ysL~sRelIAdsiE-~~~~a~~~Dg~V~l~gCDK~vPG~l 186 (613)
++.+-+.+++. |+-+.|+.++- -|.+... .|++|.+..-|..|-... -..+... .-.|++..+.--.=-++
T Consensus 3 ~~~l~~~L~~~-Gv~~vFgipG~~~~~l~~al~~~-~~i~~v~~rhE~~A~~mA~gyar~tg-~~~v~~~t~GpG~~n~~ 79 (164)
T cd07039 3 ADVIVETLENW-GVKRVYGIPGDSINGLMDALRRE-GKIEFIQVRHEEAAAFAASAEAKLTG-KLGVCLGSSGPGAIHLL 79 (164)
T ss_pred HHHHHHHHHHC-CCCEEEEcCCCchHHHHHHHhhc-CCCeEEEeCCHHHHHHHHHHHHHHhC-CCEEEEECCCCcHHHHH
Confidence 45555555554 67778876653 4555432 589999988885544222 2333332 12333333333333344
Q ss_pred Hhh--hc-cCCCeEEEccCCCCCc--ccCCcccceehHHHHHHHHhcCCCCHHHHHHHHH
Q 007192 187 MAM--GR-LNRPGIMVYGGTIKPG--HFQGHTYDIVSAFQVYGEYVSGSISDEQRMNVVL 241 (613)
Q Consensus 187 Maa--aR-lniPsi~v~gGpm~~G--~~~g~~~~~~~~~e~~g~~~~G~i~~eel~~~E~ 241 (613)
+|+ |. -++|-|+++|..-... ...-+.++..++|+-+-++..---+.+++.+.-+
T Consensus 80 ~~l~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~ 139 (164)
T cd07039 80 NGLYDAKRDRAPVLAIAGQVPTDELGTDYFQEVDLLALFKDVAVYNETVTSPEQLPELLD 139 (164)
T ss_pred HHHHHHHhcCCCEEEEecCCcccccCCCCCcccCHHHHHHHhhcEEEEeCCHHHHHHHHH
Confidence 443 33 4599999998765442 2112345666777777776665556666555443
No 106
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase. Archaeal members of this family are considered putative, although included in the seed and scoring above the trusted cutoff.
Probab=23.60 E-value=1.9e+02 Score=27.84 Aligned_cols=83 Identities=18% Similarity=0.168 Sum_probs=51.7
Q ss_pred EEE-EecCCCccccccchHHHHHHHHHHHHHcCCcee---EEeccccCcccccCccCceecccchHHHHHHHHHHHcccC
Q 007192 93 VGI-SSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGF---RFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQW 168 (613)
Q Consensus 93 IgI-~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~---ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~ 168 (613)
|+| ++.||+- --+.|-+..++...+.|-..- +|.+|+.-| +|. .+..+++...
T Consensus 3 i~IV~s~~n~~-----i~~~L~~ga~~~l~~~g~~~~~i~v~~VPGa~E------------iP~------a~~~l~~~~~ 59 (138)
T TIGR00114 3 VGIVIARFNRD-----ITDMLLKGAIDALKRLGAEVDNIDVIWVPGAFE------------LPL------AVKKLAETGK 59 (138)
T ss_pred EEEEEecCCHH-----HHHHHHHHHHHHHHHcCCCccceEEEECCcHHH------------HHH------HHHHHHhcCC
Confidence 444 4567764 456677777777788885543 556665433 332 1223345678
Q ss_pred CCcEEEccC------------CCCCchhhHHhhhccCCCeEE
Q 007192 169 YDANISIPG------------CDKNMPGTIMAMGRLNRPGIM 198 (613)
Q Consensus 169 ~Dg~V~l~g------------CDK~vPG~lMaaaRlniPsi~ 198 (613)
|||+|.|+- |+-..=|.+=-.+..++|.+|
T Consensus 60 ~DavI~LG~VIrG~T~H~e~v~~~v~~gl~~~sl~~~~PV~~ 101 (138)
T TIGR00114 60 YDAVIALGCVIRGGTPHFEYVADEAAKGIADLALDYDKPVIF 101 (138)
T ss_pred CCEEEEEeeEEeCCCchhHHHHHHHHHHHHHHHhhhCCCEEE
Confidence 999999974 444445555555667889887
No 107
>KOG2776 consensus Metallopeptidase [General function prediction only]
Probab=23.47 E-value=53 Score=36.52 Aligned_cols=27 Identities=30% Similarity=0.511 Sum_probs=23.0
Q ss_pred ceEEecccccCCCCeEEeecCCEEEEecC
Q 007192 535 VVGHVCPEAQDGGPIGLIQNGDIINIDVQ 563 (613)
Q Consensus 535 ~IGHVsPEAa~GGpIAlV~dGD~I~IDi~ 563 (613)
|++|.||+.-+- =..+|+||++.||+.
T Consensus 88 cv~h~sPlksd~--~~~Lk~GDvVKIdLG 114 (398)
T KOG2776|consen 88 CVCHFSPLKSDA--DYTLKEGDVVKIDLG 114 (398)
T ss_pred eeeccCcCCCCC--cccccCCCEEEEEee
Confidence 889999998763 456899999999985
No 108
>PF03737 Methyltransf_6: Demethylmenaquinone methyltransferase; InterPro: IPR005493 This entry represents a structural motif found in demethylmenaquinone methyltransferases and in the regulator of ribonuclease E activity A (RraA). These proteins contain a swivelling 3-layer beta/beta/alpha domain that appears to be mobile in most multi-domain proteins known to contain it. These proteins are structurally similar, and may have distant homology, to the phosphohistidine domain of pyruvate phosphate dikinase. The RraA fold is an ancient platform that has been adapted for a wide range of functions. RraA had been identified as a putative demethylmenaquinone methyltransferase and was annotated as MenG, but further analysis showed that RraA lacked the structural motifs usually required for methylases. The Escherichia coli protein regulator RraA acts as a trans-acting modulator of RNA turnover, binding essential endonuclease RNase E and inhibiting RNA processing []. RNase E forms the core of a large RNA-catalysis machine termed the degradosomes. RraA (and RraB) causes remodelling of degradosome composition, which is associated with alterations in RNA decay and global transcript abundance and as such is a bacterial mechanism for the regulation of RNA cleavage. Demethylmenaquinone methyltransferases convert dimethylmenaquinone (DMK) to menaquinone (MK) in the final step of menaquinone biosynthesis. This region is also found at the C terminus of the DlpA protein Q48806 from SWISSPROT.; PDB: 3C8O_A 2PCN_A 3K4I_B 2YJV_A 1Q5X_B 2C5Q_D 2YJT_B 1NXJ_B 3NOJ_A 1J3L_A ....
Probab=23.28 E-value=53 Score=31.60 Aligned_cols=100 Identities=24% Similarity=0.317 Sum_probs=56.2
Q ss_pred CceEEeeEE---Eec-CHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCCcchHHHHHhCCCCCeeEEEcCCCCCC-
Q 007192 455 GLYFSGPAL---VFE-GEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSG- 529 (613)
Q Consensus 455 ~~~f~GpA~---VFd-seeda~~aI~~g~I~~~GdVvVIRyeGPkGgPGMpEml~~t~al~g~Gl~~~VALITDGRfSG- 529 (613)
..++-|||+ ++. +.....++|+ .+.+ |||+||-..|+.-.-=.=|++. .+.+.+|+ .++|+||..-=
T Consensus 29 ~~~~~G~A~Tv~~~~~~~~~~~~~i~--~~~~-G~VlVid~~~~~~~a~~G~~~a--~~a~~~G~---~G~VidG~vRD~ 100 (154)
T PF03737_consen 29 GMKIVGPAVTVRFAPGDNLLVREAID--AAPP-GDVLVIDGGGDTDCAVWGELMA--TAAKARGV---AGVVIDGAVRDV 100 (154)
T ss_dssp CSSEEEEEEEEEESSTBSHHHHHHHT--SS-T-TEEEEEEETTGSSSEEE-HHHH--HHHHHTTB---SEEEEEEEES-H
T ss_pred CCEEEEEEEEEEEECCCCHHHHHHHh--cCCC-CeEEEEECCCCcceeeECHHHH--HHHHHCCC---eEEECCCcccCH
Confidence 456788884 555 5556667766 4588 9999999887752212223332 23355775 68999986321
Q ss_pred ----------CCCCcce---EEecccccCCCCeE----EeecCCEEEEecC
Q 007192 530 ----------GSHGFVV---GHVCPEAQDGGPIG----LIQNGDIINIDVQ 563 (613)
Q Consensus 530 ----------as~G~~I---GHVsPEAa~GGpIA----lV~dGD~I~IDi~ 563 (613)
.++|+.- ....+.. .+.||. .|+.||+|.=|.+
T Consensus 101 ~~i~~~~~Pvfa~g~~p~~~~~~~~~~-~~~pv~~gGv~V~pGD~I~aD~d 150 (154)
T PF03737_consen 101 DEIRELGFPVFARGTTPRGGKKRGVGE-INVPVTIGGVTVNPGDIIVADDD 150 (154)
T ss_dssp HHHTTSSSEEEEEEE-SSBTBCSSESE-ESSEEEETTEEE-TTSEEEEETT
T ss_pred HHHhhcCCCeEecccCcccCcceeeee-eCCeEEECCEEECCCCEEEECCC
Confidence 1111110 1111222 455654 6999999999854
No 109
>cd08663 DAP_dppA_1 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=23.26 E-value=37 Score=35.97 Aligned_cols=133 Identities=19% Similarity=0.208 Sum_probs=76.2
Q ss_pred ecCCCccccccch---HH----HHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccc-----hHHHHHH--HHH
Q 007192 97 SVWYEGNTCNMHL---LR----LSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQS-----RDLIADS--IET 162 (613)
Q Consensus 97 ns~~e~~Pch~hl---~~----la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~s-----RelIAds--iE~ 162 (613)
.+|.+..|++..+ ++ -..++-+|..++|..-+. |.| +|..|+=-|+. -+||.-. --.
T Consensus 16 ~~~~~~~~~~~~Y~r~r~~mT~evnAaiega~~aGa~eVv-----V~D----sHg~~~Nll~e~L~~~a~LI~G~pkp~~ 86 (266)
T cd08663 16 VSPEQVRPGGREYERARRLMTDEVNAAIEGALEAGATEVL-----VND----SHGSMRNLLPEDLDPRARLISGSPKPLG 86 (266)
T ss_pred CCHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHcCCcEEE-----EEc----CCCCccCcChHHCCccEEEEecCCCCch
Confidence 3488888887666 33 233455666777755433 445 56677444443 2222100 013
Q ss_pred HHcc--cCCCcEEEccCCCCC-c-hhh------------------------HH--hhhccCCCeEEEccCCCCCcccC--
Q 007192 163 VMSA--QWYDANISIPGCDKN-M-PGT------------------------IM--AMGRLNRPGIMVYGGTIKPGHFQ-- 210 (613)
Q Consensus 163 ~~~a--~~~Dg~V~l~gCDK~-v-PG~------------------------lM--aaaRlniPsi~v~gGpm~~G~~~-- 210 (613)
|+++ ..||+++||+==-|. . +|. |- -|+.+|+|.+||+|=-..-..-+
T Consensus 87 Mm~Gld~~~D~v~fiGYHa~ag~~~gvL~HT~s~~~v~~v~iNG~~vgE~glna~~Ag~~gVPV~lVsGDd~~~~ea~~~ 166 (266)
T cd08663 87 MMEGLDEGFDAALFVGYHARAGTPPGVLSHTYSGGAVRDVRLNGREVGETGLNAAVAGEYGVPVVLVTGDDAACAEAREL 166 (266)
T ss_pred hhhccccCcCEEEEEecCCCcCCCCCcccccccccceEEEEECCEEcCHHHHHHHHHhhcCCCEEEEecCHHHHHHHHhh
Confidence 4444 689999999811111 2 222 11 25678999999997654433111
Q ss_pred CcccceehHHHHHHHHhcCCCCHHHHHH
Q 007192 211 GHTYDIVSAFQVYGEYVSGSISDEQRMN 238 (613)
Q Consensus 211 g~~~~~~~~~e~~g~~~~G~i~~eel~~ 238 (613)
...+....+.+++|++++=.++.++..+
T Consensus 167 ~p~i~tv~vK~~~gr~aa~~~~p~~a~~ 194 (266)
T cd08663 167 GPGVETVAVKEAIGRFAARCLPPAEARA 194 (266)
T ss_pred CCCcEEEEEecccCCCccccCCHHHHHH
Confidence 2334445678888988888888655443
No 110
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=23.16 E-value=93 Score=32.61 Aligned_cols=88 Identities=22% Similarity=0.306 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHhCCCCcccccCHHHHHHHHHHHHhcCCCchhHHhHHHHHHHhCCCCChHHHHHhhCCCCceeeccC
Q 007192 285 DECRLAGKYLLELLRMDLKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVPFLADLKP 364 (613)
Q Consensus 285 ~~a~~aG~~iv~lv~~~i~PrdIlT~~af~NAi~v~~A~GGSTNavLHL~AIA~eagi~ltl~dfd~is~~vP~l~~l~P 364 (613)
..||.+|..++-|+-..==-.-.|+--=.-|.| .|+=|..=.++.+.++||=- ..++++++++++++|..+
T Consensus 99 a~AR~~GHpvI~Lv~G~A~SGaFLA~GlqA~rl---~AL~ga~i~vM~~~s~ARVT--k~~ve~Le~la~s~PvfA---- 169 (234)
T PF06833_consen 99 ALARLAGHPVIGLVYGKAMSGAFLAHGLQANRL---IALPGAMIHVMGKPSAARVT--KRPVEELEELAKSVPVFA---- 169 (234)
T ss_pred HHHHHcCCCeEEEEecccccHHHHHHHHHhcch---hcCCCCeeecCChHHhHHHh--hcCHHHHHHHhhcCCCcC----
Confidence 455555555555543221112222222223333 34447777788899998843 458899999999999875
Q ss_pred CChhhHHHHHhhCCHHHHHH
Q 007192 365 SGKYVMEDVHKIGGTPAVIR 384 (613)
Q Consensus 365 ~G~~~m~dl~~aGGvpaVlk 384 (613)
|.++.|+.-|++-.++.
T Consensus 170 ---~gi~ny~~lG~l~~l~~ 186 (234)
T PF06833_consen 170 ---PGIENYAKLGALDELWD 186 (234)
T ss_pred ---CCHHHHHHhccHHHHhc
Confidence 56899999999987654
No 111
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=23.07 E-value=7.1e+02 Score=24.31 Aligned_cols=85 Identities=12% Similarity=0.063 Sum_probs=53.0
Q ss_pred EEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCCCcE
Q 007192 93 VGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDAN 172 (613)
Q Consensus 93 IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~Dg~ 172 (613)
|||+-.- + -|-.+.++.+.+.+...+.|-....+.+ +. +-+--.+.+|. +....+||+
T Consensus 2 Ig~i~~~--~--~~~~~~~~~~gi~~~~~~~gy~v~~~~~----~~-------------~~~~~~~~i~~-~~~~~~dgi 59 (269)
T cd06293 2 IGLVVPD--I--ANPFFAELADAVEEEADARGLSLVLCAT----RN-------------RPERELTYLRW-LDTNHVDGL 59 (269)
T ss_pred EEEEeCC--C--CCCcHHHHHHHHHHHHHHCCCEEEEEeC----CC-------------CHHHHHHHHHH-HHHCCCCEE
Confidence 6666532 1 1446778888888888888866655433 10 12334455566 457779999
Q ss_pred EEccCCCCCchhhHHhhhccCCCeEEEcc
Q 007192 173 ISIPGCDKNMPGTIMAMGRLNRPGIMVYG 201 (613)
Q Consensus 173 V~l~gCDK~vPG~lMaaaRlniPsi~v~g 201 (613)
|+.+ |+..-+. +-.+...++|.|++--
T Consensus 60 ii~~-~~~~~~~-~~~~~~~~~pvV~i~~ 86 (269)
T cd06293 60 IFVT-NRPDDGA-LAKLINSYGNIVLVDE 86 (269)
T ss_pred EEeC-CCCCHHH-HHHHHhcCCCEEEECC
Confidence 9974 6644333 3344566899999853
No 112
>PF10683 DBD_Tnp_Hermes: Hermes transposase DNA-binding domain ; InterPro: IPR018473 This domain confers specific DNA-binding on Hermes transposase [].; PDB: 2BW3_B.
Probab=22.43 E-value=1.1e+02 Score=26.50 Aligned_cols=35 Identities=14% Similarity=0.271 Sum_probs=26.1
Q ss_pred HHHHHHHHHhCCCCcccccCHHHHHHHHHHHHhcC
Q 007192 290 AGKYLLELLRMDLKPRDIITKKSLRNAMVIVMALG 324 (613)
Q Consensus 290 aG~~iv~lv~~~i~PrdIlT~~af~NAi~v~~A~G 324 (613)
+.+.+++++-+|+||-.|++-+-|.|-+..++.+|
T Consensus 16 ~~~k~~qw~v~dcRpfsiv~gsGfk~la~~li~IG 50 (68)
T PF10683_consen 16 ATDKCTQWCVKDCRPFSIVSGSGFKKLAQFLINIG 50 (68)
T ss_dssp HHHHHHHHHHHCT--GGGGG-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcceeeccccHHHHHHHHHHHh
Confidence 45667778888999999999999999887776665
No 113
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.41 E-value=7.4e+02 Score=24.26 Aligned_cols=86 Identities=16% Similarity=0.140 Sum_probs=53.9
Q ss_pred EEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCCCcE
Q 007192 93 VGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDAN 172 (613)
Q Consensus 93 IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~Dg~ 172 (613)
|||+-.-. -+..+.++.+.+.+..++.|-....+.+ + . +-+-....++.+ ..+.+||+
T Consensus 2 Igvv~~~~----~~~~~~~~~~~i~~~a~~~g~~~~~~~~----~----~---------~~~~~~~~i~~l-~~~~vdgi 59 (269)
T cd06281 2 IGCLVSDI----TNPLLAQLFSGAEDRLRAAGYSLLIANS----L----N---------DPERELEILRSF-EQRRMDGI 59 (269)
T ss_pred EEEEecCC----ccccHHHHHHHHHHHHHHcCCEEEEEeC----C----C---------ChHHHHHHHHHH-HHcCCCEE
Confidence 67766421 2346788888888888888765443321 0 0 123344455554 45789999
Q ss_pred EEccCCCCCchhhHHhhhccCCCeEEEcc
Q 007192 173 ISIPGCDKNMPGTIMAMGRLNRPGIMVYG 201 (613)
Q Consensus 173 V~l~gCDK~vPG~lMaaaRlniPsi~v~g 201 (613)
|+. +|+...+..+--+.+.|+|.|++-.
T Consensus 60 i~~-~~~~~~~~~~~~~~~~~ipvV~i~~ 87 (269)
T cd06281 60 IIA-PGDERDPELVDALASLDLPIVLLDR 87 (269)
T ss_pred EEe-cCCCCcHHHHHHHHhCCCCEEEEec
Confidence 996 4665545555455677999999854
No 114
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.40 E-value=3.6e+02 Score=29.09 Aligned_cols=132 Identities=16% Similarity=0.155 Sum_probs=79.1
Q ss_pred cCCCCe-EEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCcc----CceecccchHHHHHHHH
Q 007192 87 DMSKPQ-VGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTK----GMCFSLQSRDLIADSIE 161 (613)
Q Consensus 87 d~~kP~-IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~----GM~ysL~sRelIAdsiE 161 (613)
||.++. |||+. ++.+....++++.+.+-+.+.|-.-+.....+ +-+...+. |-.++-.+. .+
T Consensus 1 ~~~~~~~I~iv~-----~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~------~~ 67 (306)
T PRK03372 1 DMTASRRVLLVA-----HTGRDEATEAARRVAKQLGDAGIGVRVLDAEA--VDLGATHPAPDDFRAMEVVDA------DP 67 (306)
T ss_pred CCCCccEEEEEe-----cCCCHHHHHHHHHHHHHHHHCCCEEEEeechh--hhhcccccccccccccccccc------hh
Confidence 566666 99873 34555677788888777777765444332111 10100010 000111110 01
Q ss_pred HHHcccCCCcEEEccCCCCCchhhHHhhhcc----CCCeEEEccCCCCCcccCCcccceehHHHHHHHHhcCCCCHHHHH
Q 007192 162 TVMSAQWYDANISIPGCDKNMPGTIMAMGRL----NRPGIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYVSGSISDEQRM 237 (613)
Q Consensus 162 ~~~~a~~~Dg~V~l~gCDK~vPG~lMaaaRl----niPsi~v~gGpm~~G~~~g~~~~~~~~~e~~g~~~~G~i~~eel~ 237 (613)
.. ....|-+|.|||= |.++-++|. ++|.+=|.-|.. |-+- .+...++.+++.++.+|+...|+..
T Consensus 68 ~~--~~~~D~vi~lGGD-----GT~L~aar~~~~~~~PilGIN~G~l--GFL~--~~~~~~~~~~l~~i~~g~y~i~~R~ 136 (306)
T PRK03372 68 DA--ADGCELVLVLGGD-----GTILRAAELARAADVPVLGVNLGHV--GFLA--EAEAEDLDEAVERVVDRDYRVEERM 136 (306)
T ss_pred hc--ccCCCEEEEEcCC-----HHHHHHHHHhccCCCcEEEEecCCC--ceec--cCCHHHHHHHHHHHHcCCceEEEee
Confidence 11 2357999999986 878887764 789888887764 5432 2445788899999999998877766
Q ss_pred HHHHh
Q 007192 238 NVVLN 242 (613)
Q Consensus 238 ~~E~~ 242 (613)
.++..
T Consensus 137 ~L~~~ 141 (306)
T PRK03372 137 TLDVT 141 (306)
T ss_pred eEEEE
Confidence 55544
No 115
>PF11213 DUF3006: Protein of unknown function (DUF3006); InterPro: IPR021377 This family of proteins has no known function.
Probab=22.34 E-value=87 Score=26.47 Aligned_cols=28 Identities=29% Similarity=0.626 Sum_probs=18.6
Q ss_pred eecCCEEEEecCCCEEEEecCHHHHHHHHhc
Q 007192 552 IQNGDIINIDVQKRRIDVQLTDEEMEERRRK 582 (613)
Q Consensus 552 V~dGD~I~IDi~~r~L~l~v~~eeL~~R~~~ 582 (613)
++.||++.| .... .+.+++|+=++|++.
T Consensus 34 ~keGDvl~i-~~~~--~~~~d~eeT~~r~~~ 61 (71)
T PF11213_consen 34 AKEGDVLEI-GEDG--SIEIDPEETEARRKE 61 (71)
T ss_pred CCcccEEEE-CCCc--eEEECHHHHHHHHHH
Confidence 568998888 2333 445667877777754
No 116
>cd05828 Sortase_D_4 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-4. These sortases recognize a unique sorting signal (LPXTA) and they constitute a specialized sorting pathway found in bacilli. Their substrates are predicted to be predominantly enzymes such as 5'-nucleotidases, glycosyl hydrolase, and subtilase.
Probab=22.33 E-value=1e+02 Score=28.35 Aligned_cols=51 Identities=24% Similarity=0.330 Sum_probs=36.9
Q ss_pred eEEEcCCCCCCCCCCcce--EEecccccCCCCeEEeecCCEEEEecCCCEEEEecCH
Q 007192 519 VALLTDGRFSGGSHGFVV--GHVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLTD 573 (613)
Q Consensus 519 VALITDGRfSGas~G~~I--GHVsPEAa~GGpIAlV~dGD~I~IDi~~r~L~l~v~~ 573 (613)
++..-+.-+-|. .|-+| ||.. ..-+.|..++.||.|.+.-.++...-.|.+
T Consensus 31 ~g~~~~~~~pg~-~gn~vIaGH~~---~~F~~L~~l~~Gd~i~v~~~~~~~~Y~V~~ 83 (127)
T cd05828 31 PGHLAGSALPGE-GGNIVIAGHRD---THFRFLGELEPGDIITLQTLGGTYTYRVTS 83 (127)
T ss_pred CEEEcCCCCCCC-CCcEEEEEeCc---hhhhChhcCCCCCEEEEEECCEEEEEEEee
Confidence 444444444443 34443 9997 578899999999999999998888877653
No 117
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=22.22 E-value=2.4e+02 Score=25.81 Aligned_cols=65 Identities=18% Similarity=0.144 Sum_probs=41.6
Q ss_pred EEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCCCcEEE
Q 007192 95 ISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDANIS 174 (613)
Q Consensus 95 I~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~Dg~V~ 174 (613)
|+++-+|+...-.-.+.-...+++-+++.|..+....++. | ..+.|.+.++...+ .+|-+|.
T Consensus 2 vi~~GdEi~~~~~~~d~~~~~l~~~l~~~G~~~~~~~~v~--D--------------d~~~I~~~l~~~~~--~~dliit 63 (135)
T smart00852 2 IISTGDELLSGGQIYDSNGPALAELLTELGIEVTRYVIVP--D--------------DKEAIKEALREALE--RADLVIT 63 (135)
T ss_pred EEEEechhhcCCCcccCcHHHHHHHHHHCCCeEEEEEEeC--C--------------CHHHHHHHHHHHHh--CCCEEEE
Confidence 5555667665422223344567777888998876665543 4 47889999988875 3786665
Q ss_pred ccC
Q 007192 175 IPG 177 (613)
Q Consensus 175 l~g 177 (613)
.+|
T Consensus 64 tGG 66 (135)
T smart00852 64 TGG 66 (135)
T ss_pred cCC
Confidence 553
No 118
>cd05829 Sortase_E Sortase E (SrtE) is a membrane transpeptidase found in gram-positive bacteria that cleaves surface proteins at a cell sorting motif and catalyzes a transpeptidation reaction in which the surface protein substrate is covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. The function of Sortase E is unknown. In two different sortase families, the N-terminus either functions as both a signal peptide for secretion and a stop-transfer signal for membrane anchoring, or it contains a signal peptide only and the C-terminus serves as a membrane anchor. Most gram-positive bacteria contain more than one sortase and it is thought that the different sortases anchor different surface protein classes. The sortase domain is a modified beta-barrel flanked by two (SrtA) or three (SrtB) short alpha-helices.
Probab=22.20 E-value=1.8e+02 Score=27.64 Aligned_cols=55 Identities=16% Similarity=0.225 Sum_probs=36.0
Q ss_pred eeEEEcCCCCCCCCCCcce-EEec-c-cccCCCCeEEeecCCEEEEec-CCCEEEEecC
Q 007192 518 EVALLTDGRFSGGSHGFVV-GHVC-P-EAQDGGPIGLIQNGDIINIDV-QKRRIDVQLT 572 (613)
Q Consensus 518 ~VALITDGRfSGas~G~~I-GHVs-P-EAa~GGpIAlV~dGD~I~IDi-~~r~L~l~v~ 572 (613)
.++-..++=+-|..+=++| ||.. . ..+.-..|..|+.||.|.|.- .+++..-.|+
T Consensus 36 ~~g~~~~~~~pG~~Gn~viaGH~~~~g~~~~F~~L~~l~~GD~I~v~~~~g~~~~Y~V~ 94 (144)
T cd05829 36 QAGWYAGGPKPGEKGTAVLAGHVDSRGGPAVFFRLGDLRKGDKVEVTRADGQTATFRVD 94 (144)
T ss_pred eeeEeCCCCCCCCCCCEEEEEecCCCCCChhhcchhcCCCCCEEEEEECCCCEEEEEEe
Confidence 4555566556564333333 9983 3 456677899999999999999 5555555443
No 119
>PRK09701 D-allose transporter subunit; Provisional
Probab=22.19 E-value=6.3e+02 Score=26.00 Aligned_cols=93 Identities=8% Similarity=-0.024 Sum_probs=57.0
Q ss_pred CCCCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHccc
Q 007192 88 MSKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQ 167 (613)
Q Consensus 88 ~~kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~ 167 (613)
+.+-.||++-... =|-.+.++.+.+++..++.|-.-+.+.+..-. +-+--...++.. ..+
T Consensus 22 ~~~~~Igvi~~~~----~~~f~~~~~~gi~~~a~~~g~~v~~~~~~~~~---------------~~~~~~~~i~~l-~~~ 81 (311)
T PRK09701 22 FAAAEYAVVLKTL----SNPFWVDMKKGIEDEAKTLGVSVDIFASPSEG---------------DFQSQLQLFEDL-SNK 81 (311)
T ss_pred ccCCeEEEEeCCC----CCHHHHHHHHHHHHHHHHcCCeEEEecCCCCC---------------CHHHHHHHHHHH-HHc
Confidence 3344889887542 25678889999999888887544433221110 112223444444 356
Q ss_pred CCCcEEEccC-CCCCchhhHHhhhccCCCeEEEcc
Q 007192 168 WYDANISIPG-CDKNMPGTIMAMGRLNRPGIMVYG 201 (613)
Q Consensus 168 ~~Dg~V~l~g-CDK~vPG~lMaaaRlniPsi~v~g 201 (613)
.+||+|+.+. .|++.|- +-.+.+.++|.|++-.
T Consensus 82 ~vDgiIi~~~~~~~~~~~-l~~~~~~giPvV~~~~ 115 (311)
T PRK09701 82 NYKGIAFAPLSSVNLVMP-VARAWKKGIYLVNLDE 115 (311)
T ss_pred CCCEEEEeCCChHHHHHH-HHHHHHCCCcEEEeCC
Confidence 7999999864 4555564 4445678899888753
No 120
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=22.14 E-value=7.3e+02 Score=25.27 Aligned_cols=102 Identities=12% Similarity=0.043 Sum_probs=57.8
Q ss_pred HHHHHhCCCCcCcC-------CCCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCce
Q 007192 75 QAILHGVGLSEADM-------SKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMC 147 (613)
Q Consensus 75 ra~l~a~G~~ded~-------~kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ 147 (613)
+...+.+||..... +.-.|||+... + -|..+.++.+.+.+...+.|-..+.++ +|.
T Consensus 37 ~~~a~~lgY~pn~~a~~l~~~~~~~Igvv~~~--~--~~~f~~~l~~~i~~~~~~~g~~~~i~~----~~~--------- 99 (329)
T TIGR01481 37 LEVIKRLDYRPNAVARGLASKRTTTVGVIIPD--I--SNIYYAELARGIEDIATMYKYNIILSN----SDE--------- 99 (329)
T ss_pred HHHHHHHCCCCCHHHHHHhhCCCCEEEEEeCC--C--CchhHHHHHHHHHHHHHHcCCEEEEEe----CCC---------
Confidence 34455667765432 23579988642 1 245677888888888888864332221 110
Q ss_pred ecccchHHHHHHHHHHHcccCCCcEEEccCCCCCchhhHHhhhccCCCeEEEc
Q 007192 148 FSLQSRDLIADSIETVMSAQWYDANISIPGCDKNMPGTIMAMGRLNRPGIMVY 200 (613)
Q Consensus 148 ysL~sRelIAdsiE~~~~a~~~Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~ 200 (613)
+-+.-...++. +..+.+||+|+++ ++.. +.++-.+.+.++|.|++.
T Consensus 100 ----~~~~~~~~~~~-l~~~~vdGiIi~~-~~~~-~~~~~~l~~~~iPvV~~~ 145 (329)
T TIGR01481 100 ----DPEKEVQVLNT-LLSKQVDGIIFMG-GTIT-EKLREEFSRSPVPVVLAG 145 (329)
T ss_pred ----CHHHHHHHHHH-HHhCCCCEEEEeC-CCCC-hHHHHHHHhcCCCEEEEe
Confidence 01111222333 4468899999875 3322 233334556799999885
No 121
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.86 E-value=1.8e+02 Score=28.13 Aligned_cols=74 Identities=15% Similarity=0.218 Sum_probs=45.6
Q ss_pred chHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCCCcEEEccCCCCCchhhHH
Q 007192 108 HLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDANISIPGCDKNMPGTIM 187 (613)
Q Consensus 108 hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~Dg~V~l~gCDK~vPG~lM 187 (613)
...++.+.+++...+.|-.- .+ .+.. -..+-..+.+|... .+..||+++.+ |++...-.+-
T Consensus 13 ~~~~~~~g~~~~a~~~g~~~-~~----~~~~------------~~~~~~~~~i~~~~-~~~vdgiii~~-~~~~~~~~~~ 73 (268)
T cd06289 13 FFAELAAGLEEVLEEAGYTV-FL----ANSG------------EDVERQEQLLSTML-EHGVAGIILCP-AAGTSPDLLK 73 (268)
T ss_pred hHHHHHHHHHHHHHHcCCeE-EE----ecCC------------CChHHHHHHHHHHH-HcCCCEEEEeC-CCCccHHHHH
Confidence 45667777777777776322 11 1110 01344455666655 47899999985 7775544555
Q ss_pred hhhccCCCeEEEc
Q 007192 188 AMGRLNRPGIMVY 200 (613)
Q Consensus 188 aaaRlniPsi~v~ 200 (613)
.+...++|.|++.
T Consensus 74 ~~~~~~ipvV~~~ 86 (268)
T cd06289 74 RLAESGIPVVLVA 86 (268)
T ss_pred HHHhcCCCEEEEe
Confidence 5667899999984
No 122
>PF04199 Cyclase: Putative cyclase; InterPro: IPR007325 Proteins in this family are thought to be cyclase enzymes. They are found in proteins involved in antibiotic synthesis. However they are also found in organisms that do not make antibiotics pointing to a wider role for these proteins. The proteins contain a conserved motif HXGTHXDXPXH that is likely to form a part of the active site.; PDB: 2B0A_A 3KRV_A 1R61_A.
Probab=21.40 E-value=1.1e+02 Score=29.13 Aligned_cols=38 Identities=29% Similarity=0.330 Sum_probs=21.6
Q ss_pred CCCceEEeeEEEecCHH------------HHHHHHh--CCCCCCCCeEEEEeC
Q 007192 453 KEGLYFSGPALVFEGEE------------SMIAAIS--EDPMSFKGKVVVIRG 491 (613)
Q Consensus 453 ~~~~~f~GpA~VFdsee------------da~~aI~--~g~I~~~GdVvVIRy 491 (613)
.....|-|||+|+|-.. +..++.+ ..+|++ ||+|+||-
T Consensus 72 ~pl~~~~g~~vviD~~~~~~~~~~~It~~dl~~~~~~~~~~i~~-gdivlirT 123 (171)
T PF04199_consen 72 IPLERFIGPAVVIDVSHDKQPPGEAITAEDLEAAWEAQGVEIRP-GDIVLIRT 123 (171)
T ss_dssp SSCCCCEEEEEEEETTT------SEE-HHHHTT------S---T-TSEEEEE-
T ss_pred hhhhhccCcEEEEeccccccCCCceEcHHHHHhhhcccccccCC-CcEEEEEC
Confidence 34556889999998665 2222333 238888 99999985
No 123
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=21.26 E-value=7.3e+02 Score=24.11 Aligned_cols=80 Identities=14% Similarity=0.105 Sum_probs=50.6
Q ss_pred EEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCCCcE
Q 007192 93 VGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDAN 172 (613)
Q Consensus 93 IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~Dg~ 172 (613)
|||+..-. -+..+.++.+.+++...+.|-..+.+.+. + .++ .+..+....+||+
T Consensus 2 igvv~~~~----~~~~~~~~~~gi~~~~~~~g~~~~~~~~~---~--------------~~~-----~~~~l~~~~vdgi 55 (261)
T cd06272 2 IGLIWPSV----SRVALTELVTGINQAISKNGYNMNVSITP---S--------------LAE-----AEDLFKENRFDGV 55 (261)
T ss_pred EEEEecCC----CchhHHHHHHHHHHHHHHcCCEEEEEecc---c--------------HHH-----HHHHHHHcCcCEE
Confidence 66666422 26678889999999998887544443331 0 112 2233567789999
Q ss_pred EEccCCCCCchhhHHhhhccCCCeEEEc
Q 007192 173 ISIPGCDKNMPGTIMAMGRLNRPGIMVY 200 (613)
Q Consensus 173 V~l~gCDK~vPG~lMaaaRlniPsi~v~ 200 (613)
|+. +|+..-+ .+--+...++|.|++-
T Consensus 56 i~~-~~~~~~~-~~~~~~~~~ipvV~~~ 81 (261)
T cd06272 56 IIF-GESASDV-EYLYKIKLAIPVVSYG 81 (261)
T ss_pred EEe-CCCCChH-HHHHHHHcCCCEEEEc
Confidence 986 4765433 3344456789999884
No 124
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.19 E-value=7.1e+02 Score=24.46 Aligned_cols=89 Identities=11% Similarity=0.044 Sum_probs=51.9
Q ss_pred EEEEecCCCccccccchHHHHHHHHHHHHHcC----CceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccC
Q 007192 93 VGISSVWYEGNTCNMHLLRLSEAVKRGVEEAG----MVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQW 168 (613)
Q Consensus 93 IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aG----G~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~ 168 (613)
||++.. + ..|-.+.++.+.+++...+.| |+=+.+. +.- . ..+-....++.++ .+.
T Consensus 2 Ig~i~~--~--~~~~f~~~~~~gi~~~a~~~~~~~~g~~~~~~-----~~~--~---------~~~~~~~~~~~l~-~~~ 60 (274)
T cd06311 2 IGVSIP--A--ADHGWTAGIVWHAQAAAKKLEAAYPDVEFILV-----TAS--N---------DTEQQNAQQDLLI-NRK 60 (274)
T ss_pred eeeecc--C--CCCcHHHHHHHHHHHHHHHhhhhCCCeEEEEE-----cCC--C---------CHHHHHHHHHHHH-HcC
Confidence 566542 2 235567788888999888886 3333321 110 0 1233334445443 466
Q ss_pred CCcEEEccCC-CCCchhhHHhhhccCCCeEEEccCC
Q 007192 169 YDANISIPGC-DKNMPGTIMAMGRLNRPGIMVYGGT 203 (613)
Q Consensus 169 ~Dg~V~l~gC-DK~vPG~lMaaaRlniPsi~v~gGp 203 (613)
.||+|+.+.- +...+ .+-.+.+.|||.|++-.++
T Consensus 61 vDgiii~~~~~~~~~~-~i~~~~~~gIpvV~~d~~~ 95 (274)
T cd06311 61 IDALVILPFESAPLTQ-PVAKAKKAGIFVVVVDRGL 95 (274)
T ss_pred CCEEEEeCCCchhhHH-HHHHHHHCCCeEEEEcCCC
Confidence 8999998752 32233 3444568899999986543
No 125
>PRK05849 hypothetical protein; Provisional
Probab=20.99 E-value=2.7e+02 Score=33.99 Aligned_cols=90 Identities=19% Similarity=0.196 Sum_probs=53.9
Q ss_pred CCceEEeeEEEecCHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCCcchHHHHHhCCCCCeeEEEcCCCCCCCCCC
Q 007192 454 EGLYFSGPALVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSHG 533 (613)
Q Consensus 454 ~~~~f~GpA~VFdseeda~~aI~~g~I~~~GdVvVIRyeGPkGgPGMpEml~~t~al~g~Gl~~~VALITDGRfSGas~G 533 (613)
..-..+|+++|-++.+ + ...+ |+|||+++--|- + +.... .+ -.++||+-= |=.||+
T Consensus 687 s~g~v~g~v~v~~~~~-------~-~~~~-G~Ilv~~~tdPg-------~---~~lf~-~~---i~g~Vte~G-g~~SH~ 742 (783)
T PRK05849 687 TQKRVEATVADLDNDN-------D-DDLE-GKIVCIENADPG-------Y---DWLFT-KG---IAGLITCYG-GANSHM 742 (783)
T ss_pred cCCEEEEEEEEecChh-------h-cCCC-CCEEEeCCCCcc-------c---hHHHh-hh---eeEEEEcCC-CcccHH
Confidence 3445799999988762 1 2347 999999998874 2 11111 11 245677621 112343
Q ss_pred cce---EEeccccc--CCCC-eEEeecCCEEEEecCCCEEEE
Q 007192 534 FVV---GHVCPEAQ--DGGP-IGLIQNGDIINIDVQKRRIDV 569 (613)
Q Consensus 534 ~~I---GHVsPEAa--~GGp-IAlV~dGD~I~IDi~~r~L~l 569 (613)
.++ -.| | |. .|+. ...+++||.|.||-.++++.+
T Consensus 743 AI~ARe~gI-P-avvg~~~~~~~~~~~g~~v~vDg~~G~v~i 782 (783)
T PRK05849 743 AIRAAELGL-P-AVIGVGEELFEKWLKAKRILLDCASQRIEI 782 (783)
T ss_pred HHHHHHcCC-C-EEEccCcchhhhccCCCEEEEECCCCEEEe
Confidence 322 011 1 22 2344 667999999999999999875
No 126
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=20.96 E-value=3.5e+02 Score=25.36 Aligned_cols=69 Identities=20% Similarity=0.100 Sum_probs=45.0
Q ss_pred CeEEEEecCCCccc------cccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHH
Q 007192 91 PQVGISSVWYEGNT------CNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVM 164 (613)
Q Consensus 91 P~IgI~ns~~e~~P------ch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~ 164 (613)
|.|+|+.+-+|+.+ +..-.+.-...+++-+++.|...... .-+.| ..+-|...++...
T Consensus 1 prv~ii~tGdEl~~~~~~~~~g~i~d~n~~~l~~~l~~~G~~v~~~--~~v~D--------------d~~~i~~~l~~~~ 64 (144)
T TIGR00177 1 PRVAVISTGDELVEPGQPLEPGQIYDSNGPLLAALLEEAGFNVSRL--GIVPD--------------DPEEIREILRKAV 64 (144)
T ss_pred CEEEEEEcCcccccCCCCCCCCeEEeCcHHHHHHHHHHCCCeEEEE--eecCC--------------CHHHHHHHHHHHH
Confidence 78999999999996 23334666667888888887543332 22333 3566777777665
Q ss_pred cccCCCcEEEccC
Q 007192 165 SAQWYDANISIPG 177 (613)
Q Consensus 165 ~a~~~Dg~V~l~g 177 (613)
+ ..|-+|.-+|
T Consensus 65 ~--~~DliIttGG 75 (144)
T TIGR00177 65 D--EADVVLTTGG 75 (144)
T ss_pred h--CCCEEEECCC
Confidence 4 5777666653
No 127
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=20.89 E-value=4.5e+02 Score=26.07 Aligned_cols=93 Identities=11% Similarity=0.142 Sum_probs=56.9
Q ss_pred CcCCCCeEEEEec-CCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHH
Q 007192 86 ADMSKPQVGISSV-WYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVM 164 (613)
Q Consensus 86 ed~~kP~IgI~ns-~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~ 164 (613)
-+.+...|+|+-+ ||+. --+.|-+-..+.+.+.|...-...++-|--- |-||. .+..++
T Consensus 6 ~~~~~~riaIV~srfn~~-----It~~Ll~gA~~~l~~~G~~~~~i~v~~VPGA---------~EiP~------~a~~l~ 65 (158)
T PRK12419 6 RFATPQRIAFIQARWHAD-----IVDQARKGFVAEIAARGGAASQVDIFDVPGA---------FEIPL------HAQTLA 65 (158)
T ss_pred CCCCCCEEEEEEecCCHH-----HHHHHHHHHHHHHHHcCCCccceEEEECCcH---------HHHHH------HHHHHH
Confidence 3445567887655 7665 4566777777788888864333333322211 33432 123345
Q ss_pred cccCCCcEEEccC------------CCCCchhhHHhhhccCCCeEE
Q 007192 165 SAQWYDANISIPG------------CDKNMPGTIMAMGRLNRPGIM 198 (613)
Q Consensus 165 ~a~~~Dg~V~l~g------------CDK~vPG~lMaaaRlniPsi~ 198 (613)
+...|||+|+|+- |+-..=|.+=-.+..++|.+|
T Consensus 66 ~~~~yDaiIaLG~VIrGeT~H~e~V~~~v~~gl~~vsl~~~~PV~f 111 (158)
T PRK12419 66 KTGRYAAIVAAALVVDGGIYRHEFVAQAVIDGLMRVQLDTEVPVFS 111 (158)
T ss_pred hcCCCCEEEEEEEEEcCCCchhHHHHHHHHHHHHHHHhccCCCEEE
Confidence 5677999999974 555555665556677889888
No 128
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=20.62 E-value=6.7e+02 Score=24.81 Aligned_cols=85 Identities=14% Similarity=0.044 Sum_probs=53.0
Q ss_pred EEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCCCcE
Q 007192 93 VGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDAN 172 (613)
Q Consensus 93 IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~Dg~ 172 (613)
||++..- .-+-.+.++.+.+.+..++.|-... + ++.- .-+-....++.++ ....||+
T Consensus 2 Ig~v~~~----~~~~~~~~~~~gi~~~~~~~g~~~~-~-----~~~~------------~~~~~~~~i~~~~-~~~~dgi 58 (289)
T cd01540 2 IGFIVKQ----PEEPWFQTEWKFAKKAAKEKGFTVV-K-----IDVP------------DGEKVLSAIDNLG-AQGAKGF 58 (289)
T ss_pred eeeecCC----CCCcHHHHHHHHHHHHHHHcCCEEE-E-----ccCC------------CHHHHHHHHHHHH-HcCCCEE
Confidence 5665532 2355678888888888888774432 1 2210 0111233556654 4779999
Q ss_pred EEccCCCC-CchhhHHhhhccCCCeEEEcc
Q 007192 173 ISIPGCDK-NMPGTIMAMGRLNRPGIMVYG 201 (613)
Q Consensus 173 V~l~gCDK-~vPG~lMaaaRlniPsi~v~g 201 (613)
|+.+ +|. ..+-.+..+...|+|.|++-.
T Consensus 59 ii~~-~~~~~~~~~~~~~~~~~iPvV~~~~ 87 (289)
T cd01540 59 VICV-PDVKLGPAIVAKAKAYNMKVVAVDD 87 (289)
T ss_pred EEcc-CchhhhHHHHHHHHhCCCeEEEecC
Confidence 9975 563 456667777889999998743
No 129
>PLN00072 3-isopropylmalate isomerase/dehydratase small subunit; Provisional
Probab=20.45 E-value=44 Score=35.18 Aligned_cols=48 Identities=15% Similarity=0.220 Sum_probs=30.1
Q ss_pred eEEeecCCEEEEecCCCEEEEecCHHHHHHHHhcCCCCCCC----CchHHHHHHHHh
Q 007192 549 IGLIQNGDIINIDVQKRRIDVQLTDEEMEERRRKWTPPPNK----VNRGVLYKYIKN 601 (613)
Q Consensus 549 IAlV~dGD~I~IDi~~r~L~l~v~~eeL~~R~~~w~~~~~~----~~~G~l~~Y~~~ 601 (613)
...+++||.|+||+++++|..+.+.+++. .+|.... ...|++..+++.
T Consensus 189 ~e~i~~Gd~i~VDl~~~~v~n~t~g~~~~-----~~p~~~~~~Il~aGGl~~y~r~~ 240 (246)
T PLN00072 189 CEECKTGDVVTVELGNSVLINHTTGKEYK-----LKPIGDAGPVIDAGGIFAYARKT 240 (246)
T ss_pred HHhcCCCCEEEEECCCCEEEECCCCeEEE-----ecCCHHHHHHHHcCCHHHHHHhh
Confidence 34588999999999999987655544332 1111110 135788777764
Done!