Query 007192
Match_columns 613
No_of_seqs 165 out of 1264
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 19:30:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007192.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007192hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gp4_A 6-phosphogluconate dehy 100.0 5E-196 2E-200 1592.5 27.7 534 66-611 48-620 (628)
2 3rfq_A Pterin-4-alpha-carbinol 82.0 1.4 4.8E-05 42.3 5.0 83 76-177 16-98 (185)
3 3h75_A Periplasmic sugar-bindi 79.2 9.8 0.00034 37.6 10.2 95 88-203 1-96 (350)
4 3fij_A LIN1909 protein; 11172J 77.9 3.2 0.00011 40.8 6.2 67 89-179 3-72 (254)
5 1di6_A MOGA, molybdenum cofact 71.4 5.6 0.00019 38.3 5.9 70 88-172 1-70 (195)
6 1y5e_A Molybdenum cofactor bio 68.7 17 0.00057 33.7 8.3 70 88-176 11-80 (169)
7 3ksm_A ABC-type sugar transpor 68.0 36 0.0012 31.6 10.6 94 91-203 1-94 (276)
8 1g8l_A Molybdopterin biosynthe 67.6 29 0.00099 37.0 10.9 114 71-208 157-282 (411)
9 1uuy_A CNX1, molybdopterin bio 66.1 7.7 0.00026 35.9 5.4 73 88-176 3-79 (167)
10 1uz5_A MOEA protein, 402AA lon 64.8 36 0.0012 36.1 10.9 114 71-208 160-285 (402)
11 2pjk_A 178AA long hypothetical 63.4 14 0.00049 34.7 6.8 77 85-177 10-90 (178)
12 1mkz_A Molybdenum cofactor bio 61.8 38 0.0013 31.5 9.4 72 84-174 4-75 (172)
13 3uug_A Multiple sugar-binding 61.5 51 0.0018 31.7 10.6 91 89-201 2-92 (330)
14 3m9w_A D-xylose-binding peripl 61.4 65 0.0022 30.9 11.3 92 89-202 1-92 (313)
15 2dri_A D-ribose-binding protei 61.0 42 0.0014 31.6 9.7 89 90-200 1-89 (271)
16 8abp_A L-arabinose-binding pro 59.0 39 0.0013 32.1 9.1 90 90-202 2-91 (306)
17 2fts_A Gephyrin; gephyrin, neu 58.3 27 0.00093 37.2 8.6 87 71-176 161-255 (419)
18 3c8o_A Regulator of ribonuclea 57.8 8.5 0.00029 36.2 4.1 100 456-563 30-149 (162)
19 3rot_A ABC sugar transporter, 57.6 73 0.0025 30.4 10.9 94 89-202 2-95 (297)
20 3noj_A 4-carboxy-4-hydroxy-2-o 56.5 15 0.00052 36.6 5.9 104 457-569 56-180 (238)
21 1q5x_A Regulator of RNAse E ac 55.9 6 0.0002 37.1 2.7 99 457-563 31-149 (161)
22 3gbv_A Putative LACI-family tr 54.8 58 0.002 30.7 9.5 95 90-201 8-102 (304)
23 3l6u_A ABC-type sugar transpor 54.6 98 0.0033 29.1 11.1 90 90-201 8-97 (293)
24 1j3l_A Demethylmenaquinone met 54.6 9.9 0.00034 35.9 4.0 99 457-563 30-148 (164)
25 1vi4_A Regulator of ribonuclea 54.2 7.9 0.00027 36.9 3.3 102 457-567 34-155 (174)
26 3pzy_A MOG; ssgcid, seattle st 53.4 12 0.00042 34.8 4.4 72 86-176 3-74 (164)
27 3k4i_A Uncharacterized protein 52.9 25 0.00086 35.1 6.8 104 457-569 52-181 (244)
28 1nxj_A Probable S-adenosylmeth 52.4 7.7 0.00026 37.3 2.9 99 457-563 60-178 (183)
29 1jlj_A Gephyrin; globular alph 50.5 25 0.00086 33.4 6.2 81 79-176 2-86 (189)
30 3tb6_A Arabinose metabolism tr 46.9 1.8E+02 0.0063 27.1 11.7 89 91-201 16-107 (298)
31 1wu2_A MOEA protein, molybdopt 46.9 43 0.0015 35.5 7.8 88 71-176 162-258 (396)
32 2pcn_A S-adenosylmethionine:2- 46.5 8.6 0.0003 36.1 2.2 100 456-563 28-147 (161)
33 2vk2_A YTFQ, ABC transporter p 44.9 1.2E+02 0.0041 29.0 10.1 89 90-200 2-90 (306)
34 3o1i_D Periplasmic protein TOR 44.8 1.4E+02 0.0048 28.1 10.5 91 90-201 5-95 (304)
35 2pbq_A Molybdenum cofactor bio 44.7 30 0.001 32.3 5.6 66 89-172 4-72 (178)
36 3qk7_A Transcriptional regulat 44.3 1.5E+02 0.0052 28.1 10.7 92 90-202 6-97 (294)
37 1tjy_A Sugar transport protein 44.0 1.4E+02 0.0047 29.0 10.5 90 91-201 4-93 (316)
38 3jy6_A Transcriptional regulat 43.8 1.5E+02 0.005 27.8 10.4 87 90-201 7-93 (276)
39 3g1w_A Sugar ABC transporter; 43.2 1.4E+02 0.0048 28.3 10.2 91 90-201 4-94 (305)
40 3kjx_A Transcriptional regulat 41.3 2.2E+02 0.0074 27.8 11.5 102 75-200 46-154 (344)
41 1gud_A ALBP, D-allose-binding 40.9 1.7E+02 0.0059 27.6 10.5 90 91-200 2-91 (288)
42 3l49_A ABC sugar (ribose) tran 40.7 1E+02 0.0035 28.9 8.7 90 90-201 5-94 (291)
43 2h3h_A Sugar ABC transporter, 40.3 2.1E+02 0.0072 27.3 11.1 89 91-201 2-90 (313)
44 1l9x_A Gamma-glutamyl hydrolas 39.1 31 0.0011 35.0 5.2 45 88-132 28-73 (315)
45 2fn9_A Ribose ABC transporter, 36.2 2.3E+02 0.008 26.4 10.5 88 91-201 3-91 (290)
46 2ioy_A Periplasmic sugar-bindi 35.8 2.7E+02 0.0092 26.1 10.9 87 91-200 2-89 (283)
47 3d02_A Putative LACI-type tran 34.8 1.3E+02 0.0044 28.4 8.5 91 90-201 4-94 (303)
48 1jx6_A LUXP protein; protein-l 34.6 2.9E+02 0.01 26.6 11.2 111 75-203 23-138 (342)
49 3egc_A Putative ribose operon 34.6 2.1E+02 0.0072 26.9 9.9 89 90-202 8-96 (291)
50 2iks_A DNA-binding transcripti 34.5 2.5E+02 0.0084 26.5 10.4 89 90-201 20-108 (293)
51 1vkm_A Conserved hypothetical 34.3 32 0.0011 35.6 4.2 108 89-220 22-144 (297)
52 2b99_A Riboflavin synthase; lu 33.5 43 0.0015 31.6 4.7 82 92-199 4-98 (156)
53 1zym_A Enzyme I; phosphotransf 33.5 17 0.00057 36.5 2.0 30 549-578 209-238 (258)
54 1fjc_A Nucleolin RBD2, protein 33.4 48 0.0016 26.6 4.5 40 457-497 51-93 (96)
55 3brs_A Periplasmic binding pro 32.5 2.8E+02 0.0094 25.9 10.3 94 90-201 5-98 (289)
56 2fvy_A D-galactose-binding per 31.1 2.5E+02 0.0087 26.3 9.9 90 91-201 3-92 (309)
57 1p27_B RNA-binding protein 8A; 31.0 42 0.0014 27.5 3.8 40 457-497 63-105 (106)
58 3k4h_A Putative transcriptiona 30.6 3E+02 0.01 25.6 10.2 92 90-201 8-100 (292)
59 2cqg_A TDP-43, TAR DNA-binding 29.4 53 0.0018 26.7 4.1 41 457-498 55-96 (103)
60 3t05_A Pyruvate kinase, PK; te 28.8 1.1E+02 0.0037 34.5 7.7 88 454-568 504-599 (606)
61 2x7x_A Sensor protein; transfe 28.8 1.9E+02 0.0067 27.9 8.8 88 90-200 6-94 (325)
62 3ixl_A Amdase, arylmalonate de 28.0 2E+02 0.0069 27.9 8.7 88 91-196 118-208 (240)
63 4g1h_A Sortase family protein; 27.8 23 0.0008 34.7 1.9 38 535-572 112-150 (215)
64 2is8_A Molybdopterin biosynthe 27.1 52 0.0018 30.2 4.0 71 90-177 1-71 (164)
65 1x5o_A RNA binding motif, sing 26.8 51 0.0017 27.4 3.6 40 457-497 64-114 (114)
66 2fc8_A NCL protein; structure 26.8 48 0.0016 26.9 3.4 40 457-497 52-94 (102)
67 3g66_A Sortase C; pilus, trans 26.4 22 0.00076 34.8 1.4 37 536-572 112-149 (212)
68 4hwg_A UDP-N-acetylglucosamine 26.3 55 0.0019 33.9 4.5 45 157-203 83-127 (385)
69 2o20_A Catabolite control prot 26.2 4.4E+02 0.015 25.4 10.9 87 90-200 63-149 (332)
70 2w1j_A Putative sortase, sorta 25.8 39 0.0013 32.9 3.1 44 529-572 104-150 (212)
71 3gv0_A Transcriptional regulat 25.5 2.9E+02 0.0099 26.0 9.2 89 90-201 8-97 (288)
72 2npt_A Dual specificity mitoge 25.4 21 0.0007 31.5 0.9 36 535-580 45-80 (106)
73 1dbq_A Purine repressor; trans 24.6 4.1E+02 0.014 24.6 10.0 88 90-201 7-95 (289)
74 4pga_A Glutaminase-asparaginas 24.5 1.7E+02 0.0058 30.3 7.8 111 86-208 5-130 (337)
75 2xz9_A Phosphoenolpyruvate-pro 24.5 1E+02 0.0034 31.8 6.0 58 110-167 62-132 (324)
76 1t2w_A Sortase; transpeptidase 24.2 55 0.0019 29.5 3.6 52 519-572 40-95 (145)
77 2dnz_A Probable RNA-binding pr 24.2 78 0.0027 25.2 4.2 40 458-498 46-88 (95)
78 1hqk_A 6,7-dimethyl-8-ribityll 23.9 1.1E+02 0.0037 28.6 5.6 86 91-199 13-114 (154)
79 3e61_A Putative transcriptiona 23.8 3.8E+02 0.013 24.7 9.6 86 90-201 8-94 (277)
80 3o0p_A Sortase family protein; 23.2 38 0.0013 33.3 2.4 54 519-572 97-154 (216)
81 3o3m_B Beta subunit 2-hydroxya 23.2 2.8E+02 0.0096 28.7 9.2 130 89-241 27-165 (385)
82 1rvv_A Riboflavin synthase; tr 23.1 1.1E+02 0.0039 28.5 5.6 86 91-199 13-114 (154)
83 3mvn_A UDP-N-acetylmuramate:L- 23.0 57 0.0019 29.6 3.5 32 461-494 118-149 (163)
84 2qh8_A Uncharacterized protein 22.6 1.7E+02 0.0059 28.1 7.0 87 89-200 7-97 (302)
85 2cqa_A RUVB-like 2; TIP48, TIP 22.1 46 0.0016 29.1 2.5 18 552-569 63-80 (95)
86 2fc9_A NCL protein; structure 21.9 71 0.0024 25.9 3.5 39 458-497 52-93 (101)
87 2hi6_A UPF0107 protein AF0055; 21.5 27 0.00093 32.5 0.9 23 548-570 110-132 (141)
88 3e3m_A Transcriptional regulat 21.3 5.8E+02 0.02 24.9 11.0 87 90-200 70-156 (355)
89 2rjo_A Twin-arginine transloca 21.2 1.8E+02 0.0063 28.1 7.0 90 90-201 5-96 (332)
90 3ot5_A UDP-N-acetylglucosamine 21.2 46 0.0016 34.5 2.7 45 158-203 104-148 (403)
91 2dnh_A Bruno-like 5, RNA bindi 21.1 3.2E+02 0.011 21.9 8.2 38 457-495 54-97 (105)
92 2hsg_A Glucose-resistance amyl 20.9 4.7E+02 0.016 25.1 9.8 101 77-201 40-147 (332)
93 2cq0_A Eukaryotic translation 20.7 85 0.0029 25.5 3.8 40 457-497 55-97 (103)
94 3kbq_A Protein TA0487; structu 20.6 1.4E+02 0.0048 28.1 5.7 68 89-175 2-69 (172)
95 4g1j_A Sortase family protein; 20.5 35 0.0012 33.7 1.5 54 519-572 100-157 (222)
96 3lft_A Uncharacterized protein 20.5 5.1E+02 0.018 24.5 9.9 86 90-200 2-90 (295)
97 3nq4_A 6,7-dimethyl-8-ribityll 20.3 1.5E+02 0.005 27.9 5.7 85 91-198 13-114 (156)
98 1di0_A Lumazine synthase; tran 20.2 1.1E+02 0.0037 28.8 4.7 86 91-199 11-112 (158)
99 2i0f_A 6,7-dimethyl-8-ribityll 20.2 1.5E+02 0.0053 27.7 5.8 88 91-198 13-115 (157)
100 4g9q_A 4-carboxymuconolactone 20.1 2.1E+02 0.007 29.0 7.1 125 224-352 99-240 (269)
101 2obx_A DMRL synthase 1, 6,7-di 20.1 97 0.0033 29.1 4.4 91 86-199 7-113 (157)
102 3dzc_A UDP-N-acetylglucosamine 20.1 58 0.002 33.5 3.2 45 158-203 101-145 (396)
103 3bil_A Probable LACI-family tr 20.1 5.1E+02 0.017 25.3 10.0 87 90-200 66-152 (348)
No 1
>2gp4_A 6-phosphogluconate dehydratase; N-terminal domain largely alpha-helical, C-terminal domain M beta-sheet (trefoil-like); 2.49A {Shewanella oneidensis} SCOP: c.8.2.2 d.334.1.1
Probab=100.00 E-value=4.8e-196 Score=1592.52 Aligned_cols=534 Identities=28% Similarity=0.478 Sum_probs=443.0
Q ss_pred CCCCCchhhHHHHH---------hCCCCc----CcCCCCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEE-e
Q 007192 66 TEPKSQGGSQAILH---------GVGLSE----ADMSKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRF-N 131 (613)
Q Consensus 66 ~~g~~~a~~ra~l~---------a~G~~d----ed~~kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef-~ 131 (613)
....++.++|+.|. ++|.+| .||+||+|||+|||||++|||+||++|++.||+||+++||+|+|| +
T Consensus 48 ~~~~~~~~~r~~l~c~n~ah~~aa~~~~dk~~~~~~~kP~IgI~ns~~d~~p~h~hl~~l~~~Vk~gv~~aGg~p~efg~ 127 (628)
T 2gp4_A 48 NDARNHGVHRSSLSCGNLAHGFAACNPDDKNALRQLTKANIGIITAFNDMLSAHQPYETYPDLLKKACQEVGSVAQVAGG 127 (628)
T ss_dssp HHHHTC--------------------------------------------------------CCC---CCCCEEEEECC-
T ss_pred HHHHhcCCCcccccchhHHHHHhcCCHhHHHHHhccCCCEEEEEeccccCcccchhHHHHHHHHHHHHHHcCCcceecCC
Confidence 33344556666666 778877 488999999999999999999999999999999999999999999 9
Q ss_pred ccccCcccccCccCceecccchHHHHHHHHHHHcccCCCcEEEccCCCCCchhhHHhhhcc-CCCeEEEccCCCCCcccC
Q 007192 132 TIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYDANISIPGCDKNMPGTIMAMGRL-NRPGIMVYGGTIKPGHFQ 210 (613)
Q Consensus 132 tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~Dg~V~l~gCDK~vPG~lMaaaRl-niPsi~v~gGpm~~G~~~ 210 (613)
||+|||||+|||+||+|||+|||+||||||+++++|+|||+|+|++||||+|||||||+|+ |||+||||||||++|+++
T Consensus 128 ~pav~DGit~G~~GM~ySL~SRelIAdsiE~~~~a~~~Dg~V~i~~CDK~~PG~LMaA~r~~niPaIfV~gGpM~~G~~~ 207 (628)
T 2gp4_A 128 VPAMCDGVTQGQPGMELSLLSREVIAMATAVGLSHNMFDGALLLGICDKIVPGLLIGALSFGHLPMLFVPAGPMKSGIPN 207 (628)
T ss_dssp BC--CCCCCCSSSGGGGHHHHHHHHHHHHHHHHTTCCCSEEEEECCSTTTTHHHHHHHHTTTTSCEEECCCCC-------
T ss_pred CCcCCCccccCCcccccchhhHHHHHHHHHHHHhCCCCCeEEEeccCCCccHHHHHHHHhcCCCCEEEEeeCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999 799999999999999999
Q ss_pred CcccceehHHHHHHHHhcCCCCHHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHhcCCCCCCCCCCCCChhHHHHHHHH
Q 007192 211 GHTYDIVSAFQVYGEYVSGSISDEQRMNVVLNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLA 290 (613)
Q Consensus 211 g~~~~~~~~~e~~g~~~~G~i~~eel~~~E~~acp~~GsC~~mgTANTM~~~~EaLGm~LPGsa~~pA~~~~r~~~a~~a 290 (613)
|+++++. ++|++|+||+|||.++|+++|||||+|+||||||||||++|||||+||||+++||++++|.++|+++
T Consensus 208 g~~~~i~------~~~a~G~i~~eel~~~E~~acps~GsC~gmgTANTM~~l~EaLGl~LPGsa~ipA~~~~R~~la~~a 281 (628)
T 2gp4_A 208 KEKARIR------QQFAQGKVDRAQLLEAEAQSYHSAGTCTFYGTANSNQLMLEVMGLQLPGSSFVNPDDPLREALNKMA 281 (628)
T ss_dssp ------------------CCTHHHHHHHTTSSCHHHHHHHHHCC-----CHHHHHTTCSCTTGGGSCTTCHHHHHHHHHH
T ss_pred CceeehH------HHHHcCCCCHHHHHHHHHhcCCCCCccCCcChHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHH
Confidence 9988664 6899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC--CCc-ccccCHHHHHHHHHHHHhcCCCchhHHhHHHHHHHhCCCCChHHHHHhhCCCCceeeccCCCh
Q 007192 291 GKYLLELLRMD--LKP-RDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVPFLADLKPSGK 367 (613)
Q Consensus 291 G~~iv~lv~~~--i~P-rdIlT~~af~NAi~v~~A~GGSTNavLHL~AIA~eagi~ltl~dfd~is~~vP~l~~l~P~G~ 367 (613)
|++||+|++++ +|| |||+|++||+|||+++||+|||||++|||+|||+|+||+|||||||+||++||+|||++|+|+
T Consensus 282 g~~iv~l~~~~~d~~P~~dIlT~~AfeNAi~v~~A~GGSTN~vLHL~AiA~eaGv~ltldDfd~is~~vP~L~~l~P~G~ 361 (628)
T 2gp4_A 282 AKQVCRLTELGTQYSPIGEVVNEKSIVNGIVALLATGGSTNLTMHIVAAARAAGIIVNWDDFSELSDAVPLLARVYPNGH 361 (628)
T ss_dssp HHHHHHTSTTSSSCCCHHHHSSHHHHHHHHHHHHHTTCCTHHHHHHHHHHHHTTCCCCHHHHHHHHTTCCBCBCCGGGSS
T ss_pred HHHHHHHHhcCCCCCChHHhCCHHHHHHHHHHHhccCccccHHHHHHHHHHHcCCCCCHHHHHHHhccCCCcceeCCCCh
Confidence 99999999955 999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhCCHHHHHHHHHHCCCCCCCCCcccCcCHHHHhccC------------CCCCCCCCccCCCCCCCCCCCCEE
Q 007192 368 YVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTF------------PHLSEGQDIIRPLSNPIKKTGHIQ 435 (613)
Q Consensus 368 ~~m~dl~~aGGvpaVlk~L~~~glL~~d~lTVtGkTl~e~l~~~------------~~~~~d~~VIrp~~~P~~~~Ggl~ 435 (613)
|+|+|||+|||+|+|||+|+++||||+||+|||||||+||++++ +..+.|++||||+++||+++|||+
T Consensus 362 ~~medf~~AGGvpavm~eL~~~GlLh~D~~TVtGktl~e~l~~~~~~~~~~~~~~~~~~~~d~~VIrp~~~P~~~~GGl~ 441 (628)
T 2gp4_A 362 ADINHFHAAGGMAFLIKELLDAGLLHEDVNTVAGYGLRRYTQEPKLLDGELRWVDGPTVSLDTEVLTSVATPFQNNGGLK 441 (628)
T ss_dssp CCHHHHHHHTHHHHHHHHHHHHTCSCCCCEETTEECGGGGGEEEEEETTEEEEEECCSSCSCTTTBCCSSSCSBSSCCEE
T ss_pred hHHHHHHHccCHHHHHHHHHHCCCcCCCCCeeCCCCHHHHHhCccccccccccccCCCCCCCCCeeCChhhcCCCCCCEE
Confidence 99999999999999999999999999999999999999999873 222368999999999999999999
Q ss_pred EEeccCCCCCeEEccccCC--CceEEeeEEEecCHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCCcchHHHHH--
Q 007192 436 VLRGNLAPEGSVAKITGKE--GLYFSGPALVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIM-- 511 (613)
Q Consensus 436 vL~GNLAP~GAVvK~sa~~--~~~f~GpA~VFdseeda~~aI~~g~I~~~GdVvVIRyeGPkGgPGMpEml~~t~al~-- 511 (613)
||+|||| |||+|+||++ .++|+|||||||||||+++||++|+|++ |||||||||||||+ ||||||.+|++|.
T Consensus 442 vL~GNLa--gaViK~sav~~~~~~~~GpArVFdsee~a~~ai~~g~i~~-gdVvVIRyeGPkG~-GMpEml~~T~~l~~L 517 (628)
T 2gp4_A 442 LLKGNLG--RAVIKVSAVQPQHRVVEAPAVVIDDQNKLDALFKSGALDR-DCVVVVKGQGPKAN-GMPELHKLTPLLGSL 517 (628)
T ss_dssp EEEETTE--EEEEECTTSCGGGSEEEEEEEEESSGGGHHHHHHTTTTSS-SEEEEECSCSHHHH-SCCBCCSSHHHHHHH
T ss_pred EEecccc--CEEeEccccCCccceEEeeeEEeCCHHHHHHHHhCCCCCC-CeEEEEeCCCCCCC-CchhhhhhhhhHHHH
Confidence 9999998 7999999975 4569999999999999999999999999 99999999999987 9999999997655
Q ss_pred -hCCCCCeeEEEcCCCCCCCCCC-cceEEecccccCCCCeEEeecCCEEEEecCCCEEEEecCHHHHHHHHhcCCCCCC-
Q 007192 512 -GAGLGKEVALLTDGRFSGGSHG-FVVGHVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLTDEEMEERRRKWTPPPN- 588 (613)
Q Consensus 512 -g~Gl~~~VALITDGRfSGas~G-~~IGHVsPEAa~GGpIAlV~dGD~I~IDi~~r~L~l~v~~eeL~~R~~~w~~~~~- 588 (613)
++|+ +|||||||||||+|+| +|||||||||++|||||+|||||+|+||+++|+|+|+||||||++||++|+||++
T Consensus 518 ~g~Gl--~VALITDGRfSGaS~gg~~igHVsPEAa~GGpIalV~dGD~I~IDi~~r~l~l~v~deEla~R~~~~~~~~~~ 595 (628)
T 2gp4_A 518 QDKGF--KVALMTDGRMSGASGKVPAAIHLTPEAIDGGLIAKVQDGDLIRVDALTGELSLLVSDTELATRTATEIDLRHS 595 (628)
T ss_dssp HHTTC--CEEEEESSBCSSSCCSSCEEEEEESCGGGTCGGGTCCTTCEEEEETTTTEEEECSCHHHHHHCCCCCCCCGGG
T ss_pred HhCCC--eEEEecccCcCCccCCCCeEEEEChhhhcCCcEEEEeCCCEEEEecCCCEEEEeeCHHHHHHhHhcCCCCccc
Confidence 9998 6999999999999995 9999999999999999999999999999999999999999999999999998766
Q ss_pred --CCchHHHHHHHHhCCCccCCccc
Q 007192 589 --KVNRGVLYKYIKNVQSASNGCVT 611 (613)
Q Consensus 589 --~~~~G~l~~Y~~~V~sA~~GA~~ 611 (613)
++++|||++|+++|+||++||++
T Consensus 596 ~~~~~~g~l~~y~~~V~sA~~GA~~ 620 (628)
T 2gp4_A 596 RYGMGRELFGVLRSNLSSPETGARS 620 (628)
T ss_dssp SSSTTGGGSHHHHHTCCCGGGTSCC
T ss_pred ccCccHHHHHHHHHhCcCHhhCCee
Confidence 78899999999999999999987
No 2
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=82.03 E-value=1.4 Score=42.29 Aligned_cols=83 Identities=16% Similarity=0.008 Sum_probs=53.0
Q ss_pred HHHHhCCCCcCcCCCCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHH
Q 007192 76 AILHGVGLSEADMSKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDL 155 (613)
Q Consensus 76 a~l~a~G~~ded~~kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRel 155 (613)
.+|.+.+.+....+||.|+|.++-+|+.++. .+.=...+++-+++.|..+....+ +.| .++.
T Consensus 16 g~~~~~~~~~~~~~~~rvaIistGdEl~~G~--~Dsn~~~L~~~L~~~G~~v~~~~i--v~D--------------d~~~ 77 (185)
T 3rfq_A 16 GYSVAPMEQGAELVVGRALVVVVDDRTAHGD--EDHSGPLVTELLTEAGFVVDGVVA--VEA--------------DEVD 77 (185)
T ss_dssp -------------CCEEEEEEEECHHHHTTC--CCSHHHHHHHHHHHTTEEEEEEEE--ECS--------------CHHH
T ss_pred hhhhcccccccCCCCCEEEEEEECcccCCCC--cCcHHHHHHHHHHHCCCEEEEEEE--eCC--------------CHHH
Confidence 5667777777778999999999999999887 777778888889999877665543 234 3788
Q ss_pred HHHHHHHHHcccCCCcEEEccC
Q 007192 156 IADSIETVMSAQWYDANISIPG 177 (613)
Q Consensus 156 IAdsiE~~~~a~~~Dg~V~l~g 177 (613)
|...++..+. ..+|-+|.-+|
T Consensus 78 I~~al~~a~~-~~~DlVIttGG 98 (185)
T 3rfq_A 78 IRNALNTAVI-GGVDLVVSVGG 98 (185)
T ss_dssp HHHHHHHHHH-TTCSEEEEESC
T ss_pred HHHHHHHHHh-CCCCEEEECCC
Confidence 8888887653 45775555443
No 3
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=79.17 E-value=9.8 Score=37.58 Aligned_cols=95 Identities=8% Similarity=-0.032 Sum_probs=64.2
Q ss_pred CCCCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcc-
Q 007192 88 MSKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSA- 166 (613)
Q Consensus 88 ~~kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a- 166 (613)
+.++.||++.....- |-.+.++.+.+++...+.|-.-..+. ++ . +.+--...++.+++.
T Consensus 1 ~~~~~Ig~i~p~~~~---~~f~~~~~~g~~~~a~~~g~~~~~~~----~~----~---------~~~~~~~~i~~~i~~~ 60 (350)
T 3h75_A 1 MSLTSVVFLNPGNST---ETFWVSYSQFMQAAARDLGLDLRILY----AE----R---------DPQNTLQQARELFQGR 60 (350)
T ss_dssp --CCEEEEEECSCTT---CHHHHHHHHHHHHHHHHHTCEEEEEE----CT----T---------CHHHHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCC---ChHHHHHHHHHHHHHHHcCCeEEEEE----CC----C---------CHHHHHHHHHHHHhcC
Confidence 468899999876543 23567888888888888864332221 11 1 233445667888887
Q ss_pred cCCCcEEEccCCCCCchhhHHhhhccCCCeEEEccCC
Q 007192 167 QWYDANISIPGCDKNMPGTIMAMGRLNRPGIMVYGGT 203 (613)
Q Consensus 167 ~~~Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~gGp 203 (613)
+.+||+|+.+ .+...+..+-.+...++|.|++-...
T Consensus 61 ~~vDgiIi~~-~~~~~~~~~~~~~~~giPvV~~~~~~ 96 (350)
T 3h75_A 61 DKPDYLMLVN-EQYVAPQILRLSQGSGIKLFIVNSPL 96 (350)
T ss_dssp SCCSEEEEEC-CSSHHHHHHHHHTTSCCEEEEEESCC
T ss_pred CCCCEEEEeC-chhhHHHHHHHHHhCCCcEEEEcCCC
Confidence 8999999986 45556666666778899999887544
No 4
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=77.85 E-value=3.2 Score=40.76 Aligned_cols=67 Identities=13% Similarity=0.116 Sum_probs=35.5
Q ss_pred CCCeEEEEecCCCcccc---ccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHc
Q 007192 89 SKPQVGISSVWYEGNTC---NMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMS 165 (613)
Q Consensus 89 ~kP~IgI~ns~~e~~Pc---h~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~ 165 (613)
.||+|||...+..-... .....-+.+..-+.|+++||.|+.++... | .+ + +..+.
T Consensus 3 ~~p~IGi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~pv~lp~~~--~---------------~~-~----~~~l~ 60 (254)
T 3fij_A 3 LKPVIGITGNRLVKGVDVFYGHRVTYTQQRYVDAIQKVGGFPIALPIDD--P---------------ST-A----VQAIS 60 (254)
T ss_dssp CCCEEEEEC------------------CHHHHHHHHHHTCEEEEECCCC--G---------------GG-H----HHHHH
T ss_pred CCCEEEEeCCcccccccccCCcchhhhhHHHHHHHHHCCCEEEEEeCCC--c---------------hH-H----HHHHh
Confidence 48999998774322110 01222344555667788999999886432 1 12 2 22222
Q ss_pred ccCCCcEEEccCCC
Q 007192 166 AQWYDANISIPGCD 179 (613)
Q Consensus 166 a~~~Dg~V~l~gCD 179 (613)
.+||+|+-+|=|
T Consensus 61 --~~DGlil~GG~~ 72 (254)
T 3fij_A 61 --LVDGLLLTGGQD 72 (254)
T ss_dssp --TCSEEEECCCSC
T ss_pred --hCCEEEECCCCC
Confidence 589999999854
No 5
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=71.41 E-value=5.6 Score=38.30 Aligned_cols=70 Identities=13% Similarity=0.120 Sum_probs=42.9
Q ss_pred CCCCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHccc
Q 007192 88 MSKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQ 167 (613)
Q Consensus 88 ~~kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~ 167 (613)
|++|.|+|+++-+|+.++.. .+.-...+++-++++|..++.....-+.| .++.|...++..+...
T Consensus 1 ~~~~rv~IIttGdEl~~G~i-~D~n~~~L~~~L~~~G~~~~v~~~~iV~D--------------d~~~I~~al~~a~~~~ 65 (195)
T 1di6_A 1 MATLRIGLVSISDRASSGVY-QDKGIPALEEWLTSALTTPFELETRLIPD--------------EQAIIEQTLCELVDEM 65 (195)
T ss_dssp -CCEEEEEEEEECC--------CCHHHHHHHHHHHHBCSCEEEEEEEEES--------------CHHHHHHHHHHHHHTS
T ss_pred CCCCEEEEEEECCCCCCCeE-EchHHHHHHHHHHHcCCCCceEEEEEeCC--------------CHHHHHHHHHHHHhcC
Confidence 46899999999999988743 23334556777778888754332333445 3788999988887655
Q ss_pred CCCcE
Q 007192 168 WYDAN 172 (613)
Q Consensus 168 ~~Dg~ 172 (613)
.+|-+
T Consensus 66 ~~DlV 70 (195)
T 1di6_A 66 SCHLV 70 (195)
T ss_dssp CCSEE
T ss_pred CCCEE
Confidence 56743
No 6
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=68.72 E-value=17 Score=33.73 Aligned_cols=70 Identities=11% Similarity=0.075 Sum_probs=48.6
Q ss_pred CCCCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHccc
Q 007192 88 MSKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQ 167 (613)
Q Consensus 88 ~~kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~ 167 (613)
+++|.|+|+++-+|+ + .-.+.=...+++-+++.|..+....+ +.| .++.|...++..++..
T Consensus 11 ~~~~rv~Ii~tGdEl--g-~i~Dsn~~~l~~~L~~~G~~v~~~~i--v~D--------------d~~~i~~~l~~~~~~~ 71 (169)
T 1y5e_A 11 PKEVRCKIVTISDTR--T-EETDKSGQLLHELLKEAGHKVTSYEI--VKD--------------DKESIQQAVLAGYHKE 71 (169)
T ss_dssp -CCCEEEEEEECSSC--C-TTTCHHHHHHHHHHHHHTCEEEEEEE--ECS--------------SHHHHHHHHHHHHTCT
T ss_pred ccCCEEEEEEEcCcc--C-eeccChHHHHHHHHHHCCCeEeEEEE--eCC--------------CHHHHHHHHHHHHhcC
Confidence 678999999999999 3 33455566777788888887665543 234 3788999998887644
Q ss_pred CCCcEEEcc
Q 007192 168 WYDANISIP 176 (613)
Q Consensus 168 ~~Dg~V~l~ 176 (613)
.+|-+|.-+
T Consensus 72 ~~DlVittG 80 (169)
T 1y5e_A 72 DVDVVLTNG 80 (169)
T ss_dssp TCSEEEEEC
T ss_pred CCCEEEEcC
Confidence 567444433
No 7
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=67.95 E-value=36 Score=31.63 Aligned_cols=94 Identities=15% Similarity=0.091 Sum_probs=59.3
Q ss_pred CeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCCC
Q 007192 91 PQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYD 170 (613)
Q Consensus 91 P~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~D 170 (613)
|.||++.... -|..+.++.+.+++...+.|-.-..+. ... -.+.+--...++.+++...+|
T Consensus 1 ~~Ig~i~~~~----~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~~------------~~~~~~~~~~i~~l~~~~~vd 61 (276)
T 3ksm_A 1 PKLLLVLKGD----SNAYWRQVYLGAQKAADEAGVTLLHRS---TKD------------DGDIAGQIQILSYHLSQAPPD 61 (276)
T ss_dssp CEEEEECSCS----SSTHHHHHHHHHHHHHHHHTCEEEECC---CSS------------TTCHHHHHHHHHHHHHHSCCS
T ss_pred CeEEEEeCCC----CChHHHHHHHHHHHHHHHcCCEEEEEC---CCC------------CCCHHHHHHHHHHHHHhCCCC
Confidence 5788887643 245678888888888888863322211 100 012333445667766655599
Q ss_pred cEEEccCCCCCchhhHHhhhccCCCeEEEccCC
Q 007192 171 ANISIPGCDKNMPGTIMAMGRLNRPGIMVYGGT 203 (613)
Q Consensus 171 g~V~l~gCDK~vPG~lMaaaRlniPsi~v~gGp 203 (613)
|+|+.+.=.....-.+-.+...++|.|++...+
T Consensus 62 gii~~~~~~~~~~~~~~~~~~~~ipvV~~~~~~ 94 (276)
T 3ksm_A 62 ALILAPNSAEDLTPSVAQYRARNIPVLVVDSDL 94 (276)
T ss_dssp EEEECCSSTTTTHHHHHHHHHTTCCEEEESSCC
T ss_pred EEEEeCCCHHHHHHHHHHHHHCCCcEEEEecCC
Confidence 999876533455666667778899999886443
No 8
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=67.55 E-value=29 Score=36.97 Aligned_cols=114 Identities=20% Similarity=0.191 Sum_probs=80.0
Q ss_pred chhhHHHHHhCCCCcCc-CCCCeEEEEecCCCcc-------ccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccC
Q 007192 71 QGGSQAILHGVGLSEAD-MSKPQVGISSVWYEGN-------TCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMG 142 (613)
Q Consensus 71 ~a~~ra~l~a~G~~ded-~~kP~IgI~ns~~e~~-------Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g 142 (613)
.+.+-++|.+.|+..=. ++||.|+|.+|-+|+. |+.. .+.-...+++-+++.|+.+..+.++ .|
T Consensus 157 ~p~~i~llas~G~~~V~V~~~~rv~iistGdEl~~~g~~~~~G~i-~dsn~~~L~~~l~~~G~~v~~~~iv--~D----- 228 (411)
T 1g8l_A 157 TTAELPVIASLGIAEVPVIRKVRVALFSTGDELQLPGQPLGDGQI-YDTNRLAVHLMLEQLGCEVINLGII--RD----- 228 (411)
T ss_dssp CTTTHHHHHHTTCCEEEEECCCEEEEEEECTTEECTTSCCCSSCE-ECCHHHHHHHHHHHTTCEEEEEEEE--CS-----
T ss_pred CHHHHHHHHhCCCceEEecCCCEEEEEEcCccccCCCCCCCCCcE-EcCchHHHHHHHHHCCCEEEEEEEe--CC-----
Confidence 45667899999987654 5799999999999998 4432 2334455777778899988776543 34
Q ss_pred ccCceecccchHHHHHHHHHHHcccCCCcEEEccCC----CCCchhhHHhhhccCCCeEEEccCCCCCcc
Q 007192 143 TKGMCFSLQSRDLIADSIETVMSAQWYDANISIPGC----DKNMPGTIMAMGRLNRPGIMVYGGTIKPGH 208 (613)
Q Consensus 143 ~~GM~ysL~sRelIAdsiE~~~~a~~~Dg~V~l~gC----DK~vPG~lMaaaRlniPsi~v~gGpm~~G~ 208 (613)
.++.|...++..++ ..|-+|.-+|- |..+|-.+-. ++ .+...+=+|.||.
T Consensus 229 ---------d~~~i~~al~~a~~--~~DlvittGG~s~g~~D~t~~al~~---~G--~i~f~~va~~PG~ 282 (411)
T 1g8l_A 229 ---------DPHALRAAFIEADS--QADVVISSGGVSVGEADYTKTILEE---LG--EIAFWKLAIKPGK 282 (411)
T ss_dssp ---------CHHHHHHHHHHHHH--HCSEEEECSSSCSSSCSHHHHHHHH---HS--EEEEEEBSEESCC
T ss_pred ---------CHHHHHHHHHHHhh--cCCEEEECCCCCCCCcccHHHHHHh---cC--cEEEEEEEeeCCC
Confidence 37888888888765 57988888764 4455555443 35 4666666777764
No 9
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=66.09 E-value=7.7 Score=35.88 Aligned_cols=73 Identities=16% Similarity=0.050 Sum_probs=45.7
Q ss_pred CCCCeEEEEecCCCccccccc---hHHHHHHHHHHHHHc-CCceeEEeccccCcccccCccCceecccchHHHHHHHHHH
Q 007192 88 MSKPQVGISSVWYEGNTCNMH---LLRLSEAVKRGVEEA-GMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETV 163 (613)
Q Consensus 88 ~~kP~IgI~ns~~e~~Pch~h---l~~la~~Vk~gI~~a-GG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~ 163 (613)
+++|.|+|+++-+|+.++... -.-|++.+++-.+++ |..+..+.+ +.| .+|.|.+.++..
T Consensus 3 ~~~~rv~IistGde~~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~i--v~D--------------d~~~i~~~l~~~ 66 (167)
T 1uuy_A 3 GPEYKVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAV--VPD--------------EVERIKDILQKW 66 (167)
T ss_dssp CCSEEEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEE--ECS--------------CHHHHHHHHHHH
T ss_pred CCCcEEEEEEECCcccCCCCccCcHHHHHHHHHhccccCCCcEEeEEEE--cCC--------------CHHHHHHHHHHH
Confidence 468999999999999887643 233455554433444 544443322 334 478899999887
Q ss_pred HcccCCCcEEEcc
Q 007192 164 MSAQWYDANISIP 176 (613)
Q Consensus 164 ~~a~~~Dg~V~l~ 176 (613)
+....+|-+|.-+
T Consensus 67 ~~~~~~DlVittG 79 (167)
T 1uuy_A 67 SDVDEMDLILTLG 79 (167)
T ss_dssp HHTSCCSEEEEES
T ss_pred HhcCCCCEEEECC
Confidence 7545567544443
No 10
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=64.75 E-value=36 Score=36.15 Aligned_cols=114 Identities=22% Similarity=0.257 Sum_probs=79.7
Q ss_pred chhhHHHHHhCCCCcCc-CCCCeEEEEecCCCcc-------ccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccC
Q 007192 71 QGGSQAILHGVGLSEAD-MSKPQVGISSVWYEGN-------TCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMG 142 (613)
Q Consensus 71 ~a~~ra~l~a~G~~ded-~~kP~IgI~ns~~e~~-------Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g 142 (613)
.+.+-++|.+.|+..=. ++||.|+|.+|-+|+. ++.. .+.-...+++-+++.|+.+..+.++ .|
T Consensus 160 ~p~~i~llas~G~~~V~V~~~prv~IistGdEl~~~g~~~~~G~i-~DsN~~~L~~~l~~~G~~v~~~~iv--~D----- 231 (402)
T 1uz5_A 160 GFKQTALLSAVGINKVKVFRKPKVAVISTGNEIVPPGNELKPGQI-YDINGRALCDAINELGGEGIFMGVA--RD----- 231 (402)
T ss_dssp CHHHHHHHHHTTCCEEEEECCCEEEEEEECTTEECTTSCCCTTCE-ECCHHHHHHHHHHHHTSEEEEEEEE--CS-----
T ss_pred CHHHHHHHHhCCCceeeecCCCEEEEEEcCccccCCCCCCCCCcE-EcchHHHHHHHHHhCCCeEEEEEEe--CC-----
Confidence 45677999999997655 5799999999999997 3332 2333445666777889887766443 24
Q ss_pred ccCceecccchHHHHHHHHHHHcccCCCcEEEccCC----CCCchhhHHhhhccCCCeEEEccCCCCCcc
Q 007192 143 TKGMCFSLQSRDLIADSIETVMSAQWYDANISIPGC----DKNMPGTIMAMGRLNRPGIMVYGGTIKPGH 208 (613)
Q Consensus 143 ~~GM~ysL~sRelIAdsiE~~~~a~~~Dg~V~l~gC----DK~vPG~lMaaaRlniPsi~v~gGpm~~G~ 208 (613)
.++.|.+.++..++ ..|-+|.-+|- |..+|-.+-. ++ .+...|=+|.||.
T Consensus 232 ---------d~~~i~~~l~~a~~--~~DlVittGG~s~g~~D~t~~al~~---~G--~~~f~~va~~PG~ 285 (402)
T 1uz5_A 232 ---------DKESLKALIEKAVN--VGDVVVISGGASGGTKDLTASVIEE---LG--EVKVHGIAIQPGK 285 (402)
T ss_dssp ---------SHHHHHHHHHHHHH--HCSEEEEECCC-----CHHHHHHHH---HS--EEEEECBSEESCT
T ss_pred ---------CHHHHHHHHHHHhh--CCCEEEEcCCCCCCCcccHHHHHHh---hC--CEEEeeEeecCCC
Confidence 37888888888765 37988887754 3445555433 35 6777777888875
No 11
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=63.45 E-value=14 Score=34.74 Aligned_cols=77 Identities=16% Similarity=0.084 Sum_probs=52.2
Q ss_pred cCcCCCCeEEEEecCCCcc----ccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHH
Q 007192 85 EADMSKPQVGISSVWYEGN----TCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSI 160 (613)
Q Consensus 85 ded~~kP~IgI~ns~~e~~----Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsi 160 (613)
.+.+++|.|+|+++-+|+. +...-.+.=...+++-+++.|..+....+ +.| .+|.|...+
T Consensus 10 ~~~~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~i--v~D--------------d~~~I~~al 73 (178)
T 2pjk_A 10 ENAPKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSL--VPD--------------DKIKILKAF 73 (178)
T ss_dssp ---CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEE--ECS--------------CHHHHHHHH
T ss_pred hcCCCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEE--eCC--------------CHHHHHHHH
Confidence 3678899999999999887 41222444556677778888887765543 334 378899999
Q ss_pred HHHHcccCCCcEEEccC
Q 007192 161 ETVMSAQWYDANISIPG 177 (613)
Q Consensus 161 E~~~~a~~~Dg~V~l~g 177 (613)
+..++...+|-+|.-+|
T Consensus 74 ~~a~~~~~~DlVittGG 90 (178)
T 2pjk_A 74 TDALSIDEVDVIISTGG 90 (178)
T ss_dssp HHHHTCTTCCEEEEESC
T ss_pred HHHHhcCCCCEEEECCC
Confidence 88876555786655543
No 12
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=61.84 E-value=38 Score=31.45 Aligned_cols=72 Identities=11% Similarity=0.061 Sum_probs=49.4
Q ss_pred CcCcCCCCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHH
Q 007192 84 SEADMSKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETV 163 (613)
Q Consensus 84 ~ded~~kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~ 163 (613)
...-+++|.|+|+++-+|. + .-.+.=+..+++-+.+.|.......+ +.| .++.|...++..
T Consensus 4 ~~~~~~~~~v~Ii~tGdE~--g-~i~D~n~~~l~~~L~~~G~~v~~~~i--v~D--------------d~~~i~~~l~~a 64 (172)
T 1mkz_A 4 VSTEFIPTRIAILTVSNRR--G-EEDDTSGHYLRDSAQEAGHHVVDKAI--VKE--------------NRYAIRAQVSAW 64 (172)
T ss_dssp CCSSCCCCEEEEEEECSSC--C-GGGCHHHHHHHHHHHHTTCEEEEEEE--ECS--------------CHHHHHHHHHHH
T ss_pred CCCCCCCCEEEEEEEeCCC--C-cccCccHHHHHHHHHHCCCeEeEEEE--eCC--------------CHHHHHHHHHHH
Confidence 3455789999999999994 3 23455566778888888876655433 334 378899999887
Q ss_pred HcccCCCcEEE
Q 007192 164 MSAQWYDANIS 174 (613)
Q Consensus 164 ~~a~~~Dg~V~ 174 (613)
++....|-+|.
T Consensus 65 ~~~~~~DlVit 75 (172)
T 1mkz_A 65 IASDDVQVVLI 75 (172)
T ss_dssp HHSSSCCEEEE
T ss_pred HhcCCCCEEEe
Confidence 76544664443
No 13
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=61.53 E-value=51 Score=31.74 Aligned_cols=91 Identities=12% Similarity=0.026 Sum_probs=59.6
Q ss_pred CCCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccC
Q 007192 89 SKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQW 168 (613)
Q Consensus 89 ~kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~ 168 (613)
++..|||+....+ |-.+.++.+.+++..++.|-.-..+. + .. +.+--...++.+++ +.
T Consensus 2 ~~~~Igvi~~~~~----~~~~~~~~~gi~~~a~~~g~~~~~~~----~----~~---------~~~~~~~~i~~~~~-~~ 59 (330)
T 3uug_A 2 DKGSVGIAMPTKS----SARWIDDGNNIVKQLQEAGYKTDLQY----A----DD---------DIPNQLSQIENMVT-KG 59 (330)
T ss_dssp CCCEEEEEECCSS----STHHHHHHHHHHHHHHHTTCEEEEEE----C----TT---------CHHHHHHHHHHHHH-HT
T ss_pred CCcEEEEEeCCCc----chHHHHHHHHHHHHHHHcCCEEEEee----C----CC---------CHHHHHHHHHHHHH-cC
Confidence 4678999876532 44778889999999988874433332 1 11 23333455666655 56
Q ss_pred CCcEEEccCCCCCchhhHHhhhccCCCeEEEcc
Q 007192 169 YDANISIPGCDKNMPGTIMAMGRLNRPGIMVYG 201 (613)
Q Consensus 169 ~Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~g 201 (613)
+||+|+.+.-.....-.+-.+...++|.|++-.
T Consensus 60 vdgiIi~~~~~~~~~~~~~~~~~~giPvV~~~~ 92 (330)
T 3uug_A 60 VKVLVIASIDGTTLSDVLKQAGEQGIKVIAYDR 92 (330)
T ss_dssp CSEEEECCSSGGGGHHHHHHHHHTTCEEEEESS
T ss_pred CCEEEEEcCCchhHHHHHHHHHHCCCCEEEECC
Confidence 999998765433444456667788999988854
No 14
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=61.38 E-value=65 Score=30.92 Aligned_cols=92 Identities=11% Similarity=0.073 Sum_probs=59.0
Q ss_pred CCCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccC
Q 007192 89 SKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQW 168 (613)
Q Consensus 89 ~kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~ 168 (613)
++..|||+.... -|-.+.++.+.+++...+.|-.-..+.+ + . +.+--...++.++ .+.
T Consensus 1 k~~~Igvi~~~~----~~~~~~~~~~gi~~~a~~~g~~~~~~~~----~----~---------~~~~~~~~i~~l~-~~~ 58 (313)
T 3m9w_A 1 KEVKIGMAIDDL----RLERWQKDRDIFVKKAESLGAKVFVQSA----N----G---------NEETQMSQIENMI-NRG 58 (313)
T ss_dssp --CEEEEEESCC----SSSTTHHHHHHHHHHHHHTSCEEEEEEC----T----T---------CHHHHHHHHHHHH-HTT
T ss_pred CCcEEEEEeCCC----CChHHHHHHHHHHHHHHHcCCEEEEECC----C----C---------CHHHHHHHHHHHH-HcC
Confidence 357899987642 2456788999999999988743332221 1 0 1233344455554 468
Q ss_pred CCcEEEccCCCCCchhhHHhhhccCCCeEEEccC
Q 007192 169 YDANISIPGCDKNMPGTIMAMGRLNRPGIMVYGG 202 (613)
Q Consensus 169 ~Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~gG 202 (613)
+||+|+.+.-.....-.+-.+...++|.|++-..
T Consensus 59 vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~ 92 (313)
T 3m9w_A 59 VDVLVIIPYNGQVLSNVVKEAKQEGIKVLAYDRM 92 (313)
T ss_dssp CSEEEEECSSTTSCHHHHHHHHTTTCEEEEESSC
T ss_pred CCEEEEeCCChhhhHHHHHHHHHCCCeEEEECCc
Confidence 9999998876555555666677889999888643
No 15
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=60.99 E-value=42 Score=31.62 Aligned_cols=89 Identities=10% Similarity=0.113 Sum_probs=53.1
Q ss_pred CCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCC
Q 007192 90 KPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWY 169 (613)
Q Consensus 90 kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~ 169 (613)
|..||++.... .|-.+.++.+.+.+...+.|-.-+.++ ++ . +.+--.+.++.++ .+.+
T Consensus 1 ~~~Igvi~~~~----~~~f~~~~~~gi~~~~~~~g~~~~~~~----~~----~---------~~~~~~~~i~~l~-~~~v 58 (271)
T 2dri_A 1 KDTIALVVSTL----NNPFFVSLKDGAQKEADKLGYNLVVLD----SQ----N---------NPAKELANVQDLT-VRGT 58 (271)
T ss_dssp CCEEEEEESCS----SSHHHHHHHHHHHHHHHHHTCEEEEEE----CT----T---------CHHHHHHHHHHHT-TTTE
T ss_pred CcEEEEEecCC----CCHHHHHHHHHHHHHHHHcCcEEEEeC----CC----C---------CHHHHHHHHHHHH-HcCC
Confidence 67899987532 345677888888888888873322221 11 1 1222234455554 5789
Q ss_pred CcEEEccCCCCCchhhHHhhhccCCCeEEEc
Q 007192 170 DANISIPGCDKNMPGTIMAMGRLNRPGIMVY 200 (613)
Q Consensus 170 Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~ 200 (613)
||+|+.+.-.+...-.+-.+...++|.|++-
T Consensus 59 dgiIi~~~~~~~~~~~~~~~~~~~iPvV~i~ 89 (271)
T 2dri_A 59 KILLINPTDSDAVGNAVKMANQANIPVITLD 89 (271)
T ss_dssp EEEEECCSSTTTTHHHHHHHHHTTCCEEEES
T ss_pred CEEEEeCCChHHHHHHHHHHHHCCCcEEEec
Confidence 9999865432322233444556799998874
No 16
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=58.96 E-value=39 Score=32.15 Aligned_cols=90 Identities=7% Similarity=-0.056 Sum_probs=58.6
Q ss_pred CCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCC
Q 007192 90 KPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWY 169 (613)
Q Consensus 90 kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~ 169 (613)
+..||++.... .|-.+.++.+.+++...+.|- ++- +++. . +-+--...++.+++ +.+
T Consensus 2 ~~~Ig~i~~~~----~~~~~~~~~~gi~~~a~~~g~---~~~---~~~~--~----------~~~~~~~~i~~l~~-~~v 58 (306)
T 8abp_A 2 NLKLGFLVKQP----EEPWFQTEWKFADKAGKDLGF---EVI---KIAV--P----------DGEKTLNAIDSLAA-SGA 58 (306)
T ss_dssp CEEEEEEESCT----TSHHHHHHHHHHHHHHHHHTE---EEE---EEEC--C----------SHHHHHHHHHHHHH-TTC
T ss_pred CeEEEEEeCCC----CchHHHHHHHHHHHHHHHcCC---EEE---EeCC--C----------CHHHHHHHHHHHHH-cCC
Confidence 56799987642 456788899999999999872 221 2221 0 12333455666655 459
Q ss_pred CcEEEccCCCCCchhhHHhhhccCCCeEEEccC
Q 007192 170 DANISIPGCDKNMPGTIMAMGRLNRPGIMVYGG 202 (613)
Q Consensus 170 Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~gG 202 (613)
||+|+.+.-....+-.+--+...++|.|++-..
T Consensus 59 dgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~ 91 (306)
T 8abp_A 59 KGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQ 91 (306)
T ss_dssp CEEEEECSCGGGHHHHHHHHHHTTCEEEEESSC
T ss_pred CEEEEeCCCchhhHHHHHHHHHCCCcEEEeCCC
Confidence 999988754444455555667789999988643
No 17
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A
Probab=58.29 E-value=27 Score=37.21 Aligned_cols=87 Identities=18% Similarity=0.177 Sum_probs=61.3
Q ss_pred chhhHHHHHhCCCCcCc-CCCCeEEEEecCCCcc-------ccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccC
Q 007192 71 QGGSQAILHGVGLSEAD-MSKPQVGISSVWYEGN-------TCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMG 142 (613)
Q Consensus 71 ~a~~ra~l~a~G~~ded-~~kP~IgI~ns~~e~~-------Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g 142 (613)
++.+-++|.+.|+..=. ++||.|+|.+|-+|+. |+.. .+.=...+++-+++.|+.+..+.+ +.|
T Consensus 161 ~p~~iglLas~G~~~v~V~~~prv~IistGdEl~~~g~~~~~G~i-~dsN~~~L~~~l~~~G~~v~~~~i--v~D----- 232 (419)
T 2fts_A 161 GPSEIGLLATVGVTEVEVNKFPVVAVMSTGNELLNPEDDLLPGKI-RDSNRSTLLATIQEHGYPTINLGI--VGD----- 232 (419)
T ss_dssp CHHHHHHHHHHTCCEEEEECCCCEEEEEECTTEECTTSCCCTTCE-ECCHHHHHHHHHHTTTCCEEEEEE--ECS-----
T ss_pred CHHHHHHHHhCCCCeeEecCCCEEEEEEechhccCCCCCCCCCcE-ecCchHHHHHHHHHCCCEEEEEee--cCC-----
Confidence 46788999999997655 5799999999999998 4432 233344567777888988876643 234
Q ss_pred ccCceecccchHHHHHHHHHHHcccCCCcEEEcc
Q 007192 143 TKGMCFSLQSRDLIADSIETVMSAQWYDANISIP 176 (613)
Q Consensus 143 ~~GM~ysL~sRelIAdsiE~~~~a~~~Dg~V~l~ 176 (613)
.++.|.+.++..++. .|-+|.-+
T Consensus 233 ---------d~~~i~~~l~~a~~~--~DlVittG 255 (419)
T 2fts_A 233 ---------NPDDLLNALNEGISR--ADVIITSG 255 (419)
T ss_dssp ---------SHHHHHHHHHHHHHH--CSEEEEES
T ss_pred ---------CHHHHHHHHHHHHhc--CCEEEEcC
Confidence 378888888877653 57544433
No 18
>3c8o_A Regulator of ribonuclease activity A; RRAA, PAO1, RNAse E regulater, hydrolase regulator; HET: PGE PG4; 1.90A {Pseudomonas aeruginosa}
Probab=57.78 E-value=8.5 Score=36.22 Aligned_cols=100 Identities=18% Similarity=0.214 Sum_probs=61.7
Q ss_pred ceEEeeE---EEecCHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCCcchHHHHHhCCCCCeeEEEcCCCCCCC--
Q 007192 456 LYFSGPA---LVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGG-- 530 (613)
Q Consensus 456 ~~f~GpA---~VFdseeda~~aI~~g~I~~~GdVvVIRyeGPkGgPGMpEml~~t~al~g~Gl~~~VALITDGRfSGa-- 530 (613)
.+|-||| ++|++-....++|+. ..+ |||+||-..|....-=+=|++.. ..+..|. .++|+||..-=.
T Consensus 30 ~~~~G~A~Tv~~~~dn~~~~~al~~--~~~-G~VlVvd~~g~~~~a~~G~~la~--~a~~~G~---~GiVidG~vRD~~~ 101 (162)
T 3c8o_A 30 DSFGGEIVTIKCFEDNSLVKEQVDK--DGK-GKVLVVDGGGSLRRALLGDMLAE--KAAKNGW---EGIVVYGCIRDVDV 101 (162)
T ss_dssp SCEEEEEEEEECSSCCHHHHHHHTS--CCB-TEEEEEECTTCSSSBSCCHHHHH--HHHHTTB---CEEEEEEEECCHHH
T ss_pred CEEEEEEEEEEEeCCchHHHHHHhc--cCC-CCEEEEECCCCCCccchHHHHHH--HHHHCCC---eEEEecCCCCCHHH
Confidence 3577887 677777777788774 578 99999998777633333344433 3345665 678999943211
Q ss_pred --CCCcce--EEecccc-------cCCCCe----EEeecCCEEEEecC
Q 007192 531 --SHGFVV--GHVCPEA-------QDGGPI----GLIQNGDIINIDVQ 563 (613)
Q Consensus 531 --s~G~~I--GHVsPEA-------a~GGpI----AlV~dGD~I~IDi~ 563 (613)
.-++.| --++|-. ..+-|| ..|+.||+|.=|-+
T Consensus 102 l~~~~~pv~a~g~~p~~~~~~~~g~~nvpV~~gGv~V~PGD~i~aD~d 149 (162)
T 3c8o_A 102 IAQTDLGVQALASHPLKTDKRGIGDLNVAVTFGGVTFRPGEFVYADNN 149 (162)
T ss_dssp HTTSSSEEEEEEECCCBCCCCSCCEESCCEEETTEEECTTSEEEECSS
T ss_pred HhcCCCcEEEeecCCCCCcceeeeeeCCCEEECCEEECCCCEEEEcCC
Confidence 112322 2233322 223444 48999999999974
No 19
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=57.62 E-value=73 Score=30.37 Aligned_cols=94 Identities=13% Similarity=0.048 Sum_probs=59.5
Q ss_pred CCCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccC
Q 007192 89 SKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQW 168 (613)
Q Consensus 89 ~kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~ 168 (613)
.|-.||++.... -|-.+.++.+.+++...+.|-.-..+. ++. .-+.+--...++.++. +.
T Consensus 2 ~~~~Igvi~~~~----~~~~~~~~~~gi~~~a~~~g~~~~~~~----~~~-----------~~~~~~~~~~i~~l~~-~~ 61 (297)
T 3rot_A 2 VRDKYYLITHGS----QDPYWTSLFQGAKKAAEELKVDLQILA----PPG-----------ANDVPKQVQFIESALA-TY 61 (297)
T ss_dssp -CCEEEEECSCC----CSHHHHHHHHHHHHHHHHHTCEEEEEC----CSS-----------SCCHHHHHHHHHHHHH-TC
T ss_pred ceEEEEEEecCC----CCchHHHHHHHHHHHHHHhCcEEEEEC----CCC-----------cCCHHHHHHHHHHHHH-cC
Confidence 467899987654 355778888889999888773222111 110 0123334455666654 56
Q ss_pred CCcEEEccCCCCCchhhHHhhhccCCCeEEEccC
Q 007192 169 YDANISIPGCDKNMPGTIMAMGRLNRPGIMVYGG 202 (613)
Q Consensus 169 ~Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~gG 202 (613)
+||+|+.+.-.....-.+-.+...++|.|++-..
T Consensus 62 vdgiii~~~~~~~~~~~~~~~~~~giPvV~~~~~ 95 (297)
T 3rot_A 62 PSGIATTIPSDTAFSKSLQRANKLNIPVIAVDTR 95 (297)
T ss_dssp CSEEEECCCCSSTTHHHHHHHHHHTCCEEEESCC
T ss_pred CCEEEEeCCCHHHHHHHHHHHHHCCCCEEEEcCC
Confidence 9999988765555555666667789999887643
No 20
>3noj_A 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloac decarboxylase; class II aldolase, A-B-B-A sandwich, metalloprotein, lyase; HET: PG4; 1.82A {Pseudomonas putida}
Probab=56.50 E-value=15 Score=36.56 Aligned_cols=104 Identities=24% Similarity=0.344 Sum_probs=59.2
Q ss_pred eEEeeE---EEec-CHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCCcchHHHHHhCCCCCeeEEEcCCCCCCC--
Q 007192 457 YFSGPA---LVFE-GEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGG-- 530 (613)
Q Consensus 457 ~f~GpA---~VFd-seeda~~aI~~g~I~~~GdVvVIRyeGPkGgPGMpEml~~t~al~g~Gl~~~VALITDGRfSGa-- 530 (613)
+|-||| ++|. +--...++|+ ...+ |||+||-..|....-=+=|++. ...+..|. .++|+||..-=.
T Consensus 56 ~~~G~A~TV~~~p~dn~~~~~ai~--~~~~-G~VlVvd~~g~~~~A~~G~~la--~~a~~~G~---aGiVidG~vRD~~~ 127 (238)
T 3noj_A 56 SLAGSAVTVLVAPGDNWMFHVAVE--QCRP-GDVLVVSPSSPCTDGYFGDLLA--TSLQARGV---RALIVDAGVRDTQT 127 (238)
T ss_dssp CEEEEEEEEEECTTBCHHHHHHHT--TCCT-TEEEEEEESSCCCSBCCCHHHH--HHHHHTTC---CEEEEEEEECCHHH
T ss_pred eEEEEEEEEEEECCCcHHHHHHHH--hcCC-CCEEEEECCCCCCeEehHHHHH--HHHHHCCC---cEEEeecccCCHHH
Confidence 466777 5553 2233455665 4688 9999998776642212333333 34456775 788999953110
Q ss_pred --CCCcce--EEeccc-------ccCCCCe----EEeecCCEEEEecCCCEEEE
Q 007192 531 --SHGFVV--GHVCPE-------AQDGGPI----GLIQNGDIINIDVQKRRIDV 569 (613)
Q Consensus 531 --s~G~~I--GHVsPE-------Aa~GGpI----AlV~dGD~I~IDi~~r~L~l 569 (613)
.-++.| ..++|= ...+-|| ..|+.||+|.=|- ++-+-+
T Consensus 128 l~~~~fPV~a~g~~p~~~~k~~~g~invPV~igGv~V~PGD~V~aD~-dGVvvi 180 (238)
T 3noj_A 128 LRDMGFAVWARAINAQGTVKETLGSVNLPVICGGQLINPGDIVVADD-DGVVVV 180 (238)
T ss_dssp HHHHTCEEEEEEECCCCCBCCSCCEESSCEEETTEEECTTCEEEEET-TEEEEE
T ss_pred HHhCCCCEEEeecCCCCCCCCCeeeeCCCEEECCEEECCCCEEEEcC-CeEEEE
Confidence 001111 222221 2345666 7899999999996 555543
No 21
>1q5x_A Regulator of RNAse E activity A; 3-layer sandwich, alpha-beta structure, parallel beta sheet, antiparallel beta sheet, hydrolase inhibitor; 2.00A {Escherichia coli} SCOP: c.8.7.1
Probab=55.90 E-value=6 Score=37.08 Aligned_cols=99 Identities=16% Similarity=0.173 Sum_probs=60.9
Q ss_pred eEEeeE---EEecCHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCCcchHHHHHhCCCCCeeEEEcCCCCCCC---
Q 007192 457 YFSGPA---LVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGG--- 530 (613)
Q Consensus 457 ~f~GpA---~VFdseeda~~aI~~g~I~~~GdVvVIRyeGPkGgPGMpEml~~t~al~g~Gl~~~VALITDGRfSGa--- 530 (613)
+|-||| ++|++.....++|+ +..+ |||+||-..|....-=+=|++. ...+..|. .++|+||..-=.
T Consensus 31 ~~~G~A~Tv~~~~dn~~~~~al~--~~~~-G~VlVvd~~g~~~~a~~G~~la--~~a~~~G~---~G~VidG~vRD~~~i 102 (161)
T 1q5x_A 31 SFGGQIITVKCFEDNGLLYDLLE--QNGR-GRVLVVDGGGSVRRALVDAELA--RLAVQNEW---EGLVIYGAVRQVDDL 102 (161)
T ss_dssp SEEEEEEEEECSSBCHHHHHHHT--SCCT-TEEEEEECTTCSSSEEECHHHH--HHHHHTTC---CEEEEEEEECCHHHH
T ss_pred EEEEEEEEEEEeCCcHHHHHHHh--hcCC-CCEEEEECCCCCCceeehHHHH--HHHHHCCC---eEEEecCccCCHHHH
Confidence 467877 67777677778876 5688 9999999777653222233333 33456675 678999953221
Q ss_pred -CCCcce--EEeccccc-------CCCCe----EEeecCCEEEEecC
Q 007192 531 -SHGFVV--GHVCPEAQ-------DGGPI----GLIQNGDIINIDVQ 563 (613)
Q Consensus 531 -s~G~~I--GHVsPEAa-------~GGpI----AlV~dGD~I~IDi~ 563 (613)
.-++.| .-++|=.. .+-|| ..|+.||+|.=|-+
T Consensus 103 ~~~~~pv~a~g~~p~~~~~~~~g~~nvpV~~gGv~V~PGD~i~aD~d 149 (161)
T 1q5x_A 103 EELDIGIQAMAAIPVGAAGEGIGESDVRVNFGGVTFFSGDHLYADNT 149 (161)
T ss_dssp TTSSSEEEEEEECSSBCBCSCCSEESCCEEETTEEECTTCEEEECSS
T ss_pred hcCCCcEEEeEeccCCCCcCceeeeCCCEEECCEEECCCCEEEEcCC
Confidence 112332 33333222 23344 48999999999974
No 22
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=54.78 E-value=58 Score=30.68 Aligned_cols=95 Identities=12% Similarity=0.019 Sum_probs=59.9
Q ss_pred CCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCC
Q 007192 90 KPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWY 169 (613)
Q Consensus 90 kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~ 169 (613)
.-.|||+..... -|..+.++.+.+++...+.||.-+.+......+ .+.+-....++.+ ..+.+
T Consensus 8 ~~~Igvi~~~~~---~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~-------------~~~~~~~~~i~~l-~~~~v 70 (304)
T 3gbv_A 8 KYTFACLLPKHL---EGEYWTDVQKGIREAVTTYSDFNISANITHYDP-------------YDYNSFVATSQAV-IEEQP 70 (304)
T ss_dssp CEEEEEEEECCC---TTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECS-------------SCHHHHHHHHHHH-HTTCC
T ss_pred cceEEEEecCCC---CchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCC-------------CCHHHHHHHHHHH-HhcCC
Confidence 457887765432 344678888999999998866666654332111 0123333445554 45889
Q ss_pred CcEEEccCCCCCchhhHHhhhccCCCeEEEcc
Q 007192 170 DANISIPGCDKNMPGTIMAMGRLNRPGIMVYG 201 (613)
Q Consensus 170 Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~g 201 (613)
||+|+.+.-.....-.+-.+...++|.|++-.
T Consensus 71 dgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~ 102 (304)
T 3gbv_A 71 DGVMFAPTVPQYTKGFTDALNELGIPYIYIDS 102 (304)
T ss_dssp SEEEECCSSGGGTHHHHHHHHHHTCCEEEESS
T ss_pred CEEEECCCChHHHHHHHHHHHHCCCeEEEEeC
Confidence 99999875443444456666778999888764
No 23
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=54.58 E-value=98 Score=29.10 Aligned_cols=90 Identities=17% Similarity=0.045 Sum_probs=58.2
Q ss_pred CCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCC
Q 007192 90 KPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWY 169 (613)
Q Consensus 90 kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~ 169 (613)
+..|||+.... -|-.+.++.+.+++...+.|-.-..+.+ + . +.+-....++.++ .+.+
T Consensus 8 ~~~Ig~i~~~~----~~~~~~~~~~gi~~~a~~~g~~~~~~~~----~----~---------~~~~~~~~~~~l~-~~~v 65 (293)
T 3l6u_A 8 RNIVGFTIVND----KHEFAQRLINAFKAEAKANKYEALVATS----Q----N---------SRISEREQILEFV-HLKV 65 (293)
T ss_dssp -CEEEEEESCS----CSHHHHHHHHHHHHHHHHTTCEEEEEEC----S----S---------CHHHHHHHHHHHH-HTTC
T ss_pred CcEEEEEEecC----CcHHHHHHHHHHHHHHHHcCCEEEEECC----C----C---------CHHHHHHHHHHHH-HcCC
Confidence 57899987642 2456788888899999888754333321 1 0 1233344555554 4789
Q ss_pred CcEEEccCCCCCchhhHHhhhccCCCeEEEcc
Q 007192 170 DANISIPGCDKNMPGTIMAMGRLNRPGIMVYG 201 (613)
Q Consensus 170 Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~g 201 (613)
||+|+.+.-+....-.+-.+...++|.|++-.
T Consensus 66 dgiI~~~~~~~~~~~~~~~~~~~~iPvV~~~~ 97 (293)
T 3l6u_A 66 DAIFITTLDDVYIGSAIEEAKKAGIPVFAIDR 97 (293)
T ss_dssp SEEEEECSCTTTTHHHHHHHHHTTCCEEEESS
T ss_pred CEEEEecCChHHHHHHHHHHHHcCCCEEEecC
Confidence 99999876555554555666678999888753
No 24
>1j3l_A Demethylmenaquinone methyltransferase; vitamine K2, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.30A {Thermus thermophilus} SCOP: c.8.7.1
Probab=54.56 E-value=9.9 Score=35.86 Aligned_cols=99 Identities=17% Similarity=0.237 Sum_probs=60.9
Q ss_pred eEEeeE---EEecCHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCCcchHHHHHhCCCCCeeEEEcCCCCCCC---
Q 007192 457 YFSGPA---LVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGG--- 530 (613)
Q Consensus 457 ~f~GpA---~VFdseeda~~aI~~g~I~~~GdVvVIRyeGPkGgPGMpEml~~t~al~g~Gl~~~VALITDGRfSGa--- 530 (613)
+|-||| ++|++-....++|+. ..+ |||+||-..|....-=+=|++.. ..+..|. .++|+||..-=.
T Consensus 30 ~~~G~A~Tv~~~~dn~~~~~al~~--~~~-G~VlVvd~~g~~~~a~~G~~la~--~a~~~G~---~GiVidG~vRD~~~i 101 (164)
T 1j3l_A 30 RFAGRVRTLRVFEDNALVRKVLEE--EGA-GQVLFVDGGGSLRTALLGGNLAR--RAWEKGW---AGVVVHGAVRDTEEL 101 (164)
T ss_dssp SEEEEEEEEECSSBCHHHHHHHTS--CCB-TEEEEEECTTCCSSBSCCHHHHH--HHHHTTB---CEEEEESEECCHHHH
T ss_pred EEEEEEEEEEeeCCchHHHHHHhc--cCC-CcEEEEECCCCCCceeehHHHHH--HHHHCCC---eEEEecCcccCHHHH
Confidence 477887 677777777788874 578 99999998776633333344433 3445665 678999943211
Q ss_pred -CCCcce--EEeccc-------ccCCCCe----EEeecCCEEEEecC
Q 007192 531 -SHGFVV--GHVCPE-------AQDGGPI----GLIQNGDIINIDVQ 563 (613)
Q Consensus 531 -s~G~~I--GHVsPE-------Aa~GGpI----AlV~dGD~I~IDi~ 563 (613)
.-++.| .-++|= ...+-|| ..|+.||+|.=|-+
T Consensus 102 ~~~~~pV~a~g~~p~~~~~~~~g~~nvpV~~gGv~V~PGD~i~aD~d 148 (164)
T 1j3l_A 102 REVPIGLLALAATPKKSAKEGKGEVDVPLKVLGVEVLPGSFLLADED 148 (164)
T ss_dssp TTSSSEEEESEECSSBCBCSCCCEESCCEEETTEEECTTCEEEEETT
T ss_pred hcCCCcEEEeecCCCCCccceeeeeCCCEEECCEEECCCCEEEECCC
Confidence 112222 112221 2234455 47999999999974
No 25
>1vi4_A Regulator of ribonuclease acivity A protein 1; structural genomics, unknown function; 1.87A {Vibrio cholerae} SCOP: c.8.7.1
Probab=54.24 E-value=7.9 Score=36.93 Aligned_cols=102 Identities=17% Similarity=0.205 Sum_probs=62.2
Q ss_pred eEEeeE---EEecCHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCCcchHHHHHhCCCCCeeEEEcCCCCCCC---
Q 007192 457 YFSGPA---LVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGG--- 530 (613)
Q Consensus 457 ~f~GpA---~VFdseeda~~aI~~g~I~~~GdVvVIRyeGPkGgPGMpEml~~t~al~g~Gl~~~VALITDGRfSGa--- 530 (613)
+|-||| ++|.+-....++|+ +..+ |||+||-..|..-.-=+=|++. ...+..|+ .++|+||..-=.
T Consensus 34 ~~~G~A~Tv~~~~dn~~~~~al~--~~~~-G~VlVvd~~g~~~~A~~G~~la--~~a~~~G~---aGiVidG~vRD~~~l 105 (174)
T 1vi4_A 34 AFWGEIVTVRCYHDNSKVRDVLS--QNGK-GKVLVVDGHGSCHKALMGDQLA--ILAIKNDW---EGVIIYGAVRDVVAM 105 (174)
T ss_dssp CEEEEEEEEECSSCCHHHHHHHT--SCCT-TEEEEEECTTCCSSEEECHHHH--HHHHHTTC---CEEEEEEEECCHHHH
T ss_pred EEEEEEEEEEEeCccHHHHHHHh--ccCC-CEEEEEECCCCCCceehHHHHH--HHHHHCCC---eEEEeccccCCHHHH
Confidence 467777 67777777888886 4678 9999999777653222223333 33456675 678999854221
Q ss_pred -CCCcce--EEeccc-------ccCCCCe----EEeecCCEEEEecCCCEE
Q 007192 531 -SHGFVV--GHVCPE-------AQDGGPI----GLIQNGDIINIDVQKRRI 567 (613)
Q Consensus 531 -s~G~~I--GHVsPE-------Aa~GGpI----AlV~dGD~I~IDi~~r~L 567 (613)
.-++.| .-++|= ...+-|| ..|+.||+|.=|-+ +-+
T Consensus 106 ~~~~~pV~a~g~~p~~~~~~~~g~~nvpV~igGv~V~PGD~I~aD~d-GVv 155 (174)
T 1vi4_A 106 SEMDLGIKALGTSPFKTEKRGAGQVNVTLTMQNQIVEPGDYLYADWN-GIL 155 (174)
T ss_dssp TTSSSEEEEEEECSCCCCCCSCCEESCCEEETTEEECTTSEEEEETT-EEE
T ss_pred HhCCCCeEEeecCCCCCCCCCcceeCCCEEECCEEECCCCEEEEcCC-eEE
Confidence 112222 223332 2234455 46999999999984 444
No 26
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=53.41 E-value=12 Score=34.76 Aligned_cols=72 Identities=8% Similarity=0.109 Sum_probs=43.4
Q ss_pred CcCCCCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHc
Q 007192 86 ADMSKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMS 165 (613)
Q Consensus 86 ed~~kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~ 165 (613)
+.++||.|+|.++-+|+.++.. .+.=...+++-++++|..+....+ +.| . |.|...++..++
T Consensus 3 ~~~~~~rv~ii~tGdEl~~G~i-~Dsn~~~l~~~l~~~G~~v~~~~i--v~D--------------d-~~i~~al~~a~~ 64 (164)
T 3pzy_A 3 GSMTTRSARVIIASTRASSGEY-EDRCGPIITEWLAQQGFSSAQPEV--VAD--------------G-SPVGEALRKAID 64 (164)
T ss_dssp ----CCEEEEEEECHHHHC-----CCHHHHHHHHHHHTTCEECCCEE--ECS--------------S-HHHHHHHHHHHH
T ss_pred CCCCCCEEEEEEECCCCCCCce-eeHHHHHHHHHHHHCCCEEEEEEE--eCC--------------H-HHHHHHHHHHHh
Confidence 4578999999999999988743 334445566777778876544332 234 4 677777777664
Q ss_pred ccCCCcEEEcc
Q 007192 166 AQWYDANISIP 176 (613)
Q Consensus 166 a~~~Dg~V~l~ 176 (613)
...|-+|.-+
T Consensus 65 -~~~DlVittG 74 (164)
T 3pzy_A 65 -DDVDVILTSG 74 (164)
T ss_dssp -TTCSEEEEES
T ss_pred -CCCCEEEECC
Confidence 3467555443
No 27
>3k4i_A Uncharacterized protein; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; 1.69A {Pseudomonas syringae PV}
Probab=52.92 E-value=25 Score=35.05 Aligned_cols=104 Identities=18% Similarity=0.141 Sum_probs=57.9
Q ss_pred eEEeeE---EEecCHHHHH-H----HHhCCCCCCCCeEEEEeCCCCCCCCCCCCCcchHHHHHhCCCCCeeEEEcCCCCC
Q 007192 457 YFSGPA---LVFEGEESMI-A----AISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFS 528 (613)
Q Consensus 457 ~f~GpA---~VFdseeda~-~----aI~~g~I~~~GdVvVIRyeGPkGgPGMpEml~~t~al~g~Gl~~~VALITDGRfS 528 (613)
+|-||| ++|....+.. . +|+ ...+ |||+||-..|....-=+=|++.. ..+..|. .++|+||..-
T Consensus 52 ~~~G~A~TV~~~p~d~~~~~~~~~~~id--~~~~-GdVlVvd~~g~~~~A~~G~lla~--~a~~~G~---aGvVidG~vR 123 (244)
T 3k4i_A 52 RCVGIAFTVQYQPVDASEGFRGAANYID--QVPS-GSVIVSSNSGRHDCTVWGDIMTH--FALANGI---KGTVIDGVAR 123 (244)
T ss_dssp CEEEEEEEEEEEEC----------CGGG--GCCT-TEEEEEECTTCSSSBSCCHHHHH--HHHHHTC---CEEEEESBBS
T ss_pred eEEEEEEEEEEecCCCchhhhhhHHHHH--cCCC-CeEEEEECCCCCCeEehHHHHHH--HHHHCCC---eEEEeCCccC
Confidence 466777 5666544321 1 233 3578 99999998776533334444433 3345565 6789999642
Q ss_pred CC----CCCcce--EEeccc--------ccCCCCe----EEeecCCEEEEecCCCEEEE
Q 007192 529 GG----SHGFVV--GHVCPE--------AQDGGPI----GLIQNGDIINIDVQKRRIDV 569 (613)
Q Consensus 529 Ga----s~G~~I--GHVsPE--------Aa~GGpI----AlV~dGD~I~IDi~~r~L~l 569 (613)
=. .-++.| .-++|= ...+-|| ..|+.||+|.=|- ++-+-+
T Consensus 124 D~~ei~~~~fPV~a~g~~p~~~~~~~~~g~~nvPV~igGv~V~PGD~V~aD~-dGVVvi 181 (244)
T 3k4i_A 124 DIDTVINCNYPLFSRGRFMQSAKNRTQLKAVQVPLVIDGITIQPGDLMVCDG-SGCVVV 181 (244)
T ss_dssp CHHHHHHTTCCEEESCBCCCCSTTTEEEEEESSCEEETTEEECTTCEEEEET-TEEEEE
T ss_pred CHHHHHhCCCCEEEeecCCCCCCCccccceecccEEECCEEECCCCEEEEcC-CeEEEE
Confidence 11 111221 222221 1346677 6899999999996 555544
No 28
>1nxj_A Probable S-adenosylmethionine:2- demethylmenaquinone methyltransferase; beta/BETA/alpha domain, structural genomics, PSI; HET: TLA; 1.90A {Mycobacterium tuberculosis} SCOP: c.8.7.1
Probab=52.43 E-value=7.7 Score=37.32 Aligned_cols=99 Identities=21% Similarity=0.299 Sum_probs=59.5
Q ss_pred eEEeeE---EEecCHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCCcchHHHHHhCCCCCeeEEEcCCCCCCC---
Q 007192 457 YFSGPA---LVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGG--- 530 (613)
Q Consensus 457 ~f~GpA---~VFdseeda~~aI~~g~I~~~GdVvVIRyeGPkGgPGMpEml~~t~al~g~Gl~~~VALITDGRfSGa--- 530 (613)
+|-||| ++|++.....++|+. ..+ |||+||-..|+...-=+=|++.. ..+..|. .++|+||..-=.
T Consensus 60 ~~~G~A~TV~~~~dn~~~~~al~~--~~~-G~VlVvd~~g~~~~A~~G~~la~--~a~~~G~---aGiVidG~vRD~~ei 131 (183)
T 1nxj_A 60 QFAGPISTVRCFQDNALLKSVLSQ--PSA-GGVLVIDGAGSLHTALVGDVIAE--LARSTGW---TGLIVHGAVRDAAAL 131 (183)
T ss_dssp CEEEEEEEEECSSBCHHHHHHHHS--CCS-SCEEEEECTTCCSSEEECHHHHH--HHHHHTC---CEEEEEEEESCHHHH
T ss_pred EEEEEEEEEEEeCCchHHHHHHHh--cCC-CCEEEEECCCCCCceeeHHHHHH--HHHHCCC---cEEEeccccCCHHHH
Confidence 467877 677776677788874 588 99999997776632223344433 3344565 678999843211
Q ss_pred -CCCcce--EEeccc-------ccCCCCe----EEeecCCEEEEecC
Q 007192 531 -SHGFVV--GHVCPE-------AQDGGPI----GLIQNGDIINIDVQ 563 (613)
Q Consensus 531 -s~G~~I--GHVsPE-------Aa~GGpI----AlV~dGD~I~IDi~ 563 (613)
.-++.| .-++|= ...+-|| ..|+.||+|.=|-+
T Consensus 132 ~~l~fPV~a~g~~p~~~~~~~~g~~nvPV~igGv~V~PGD~I~aD~d 178 (183)
T 1nxj_A 132 RGIDIGIKALGTNPRKSTKTGAGERDVEITLGGVTFVPGDIAYSDDD 178 (183)
T ss_dssp TTSSSEEEEEEECCSBCBCSCCSEESCCEEETTEEECTTSEEEECSS
T ss_pred hcCCCcEEEeeeCCCCCCCCccceeCCCEEECCEEECCCCEEEECCC
Confidence 112222 222222 2234455 47999999998874
No 29
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=50.51 E-value=25 Score=33.42 Aligned_cols=81 Identities=14% Similarity=0.041 Sum_probs=48.3
Q ss_pred HhCCCCcCc-CCCCeEEEEecCCCccccccchHHHHHHHHHHHHH---cCCceeEEeccccCcccccCccCceecccchH
Q 007192 79 HGVGLSEAD-MSKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEE---AGMVGFRFNTIGVSDAISMGTKGMCFSLQSRD 154 (613)
Q Consensus 79 ~a~G~~ded-~~kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~---aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRe 154 (613)
.+.|++.-. +++|.|+|+++-+|+..+-. .+.=...+++-+++ .|..+....+ +.| .+|
T Consensus 2 a~~g~~~v~v~~~~rv~IistGdEl~~g~~-~D~n~~~L~~~L~~~~~~G~~v~~~~i--v~D--------------d~~ 64 (189)
T 1jlj_A 2 ATEGMILTNHDHQIRVGVLTVSDSCFRNLA-EDRSGINLKDLVQDPSLLGGTISAYKI--VPD--------------EIE 64 (189)
T ss_dssp -----------CCCEEEEEEECHHHHTTSS-CCHHHHHHHHHHHCTTTTCCEEEEEEE--ECS--------------CHH
T ss_pred CcCCcccccccCCCEEEEEEECCccCCCcc-cchHHHHHHHHHhchhcCCcEEEEEEE--eCC--------------CHH
Confidence 456776655 46899999999999887654 34455566777766 6666554432 344 378
Q ss_pred HHHHHHHHHHcccCCCcEEEcc
Q 007192 155 LIADSIETVMSAQWYDANISIP 176 (613)
Q Consensus 155 lIAdsiE~~~~a~~~Dg~V~l~ 176 (613)
.|...++..+.....|-+|.-+
T Consensus 65 ~I~~al~~a~~~~~~DlVIttG 86 (189)
T 1jlj_A 65 EIKETLIDWCDEKELNLILTTG 86 (189)
T ss_dssp HHHHHHHHHHHTSCCSEEEEES
T ss_pred HHHHHHHHHhhcCCCCEEEEcC
Confidence 8888888887655667544443
No 30
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=46.91 E-value=1.8e+02 Score=27.08 Aligned_cols=89 Identities=15% Similarity=0.187 Sum_probs=57.3
Q ss_pred CeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCCC
Q 007192 91 PQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYD 170 (613)
Q Consensus 91 P~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~D 170 (613)
..||++.... -|..+.++.+.+++...+.|-.-..+.+- . +-+--...++.++ .+.+|
T Consensus 16 ~~Igvi~~~~----~~~~~~~~~~gi~~~a~~~g~~~~~~~~~--------~---------~~~~~~~~~~~l~-~~~vd 73 (298)
T 3tb6_A 16 KTIGVLTTYI----SDYIFPSIIRGIESYLSEQGYSMLLTSTN--------N---------NPDNERRGLENLL-SQHID 73 (298)
T ss_dssp CEEEEEESCS----SSTTHHHHHHHHHHHHHHTTCEEEEEECT--------T---------CHHHHHHHHHHHH-HTCCS
T ss_pred ceEEEEeCCC----CchHHHHHHHHHHHHHHHCCCEEEEEeCC--------C---------ChHHHHHHHHHHH-HCCCC
Confidence 6899987643 34578889999999999887544433221 0 1122234445554 57899
Q ss_pred cEEEccCCCC---CchhhHHhhhccCCCeEEEcc
Q 007192 171 ANISIPGCDK---NMPGTIMAMGRLNRPGIMVYG 201 (613)
Q Consensus 171 g~V~l~gCDK---~vPG~lMaaaRlniPsi~v~g 201 (613)
|+|+.+.-.. .....+-.+...++|.|++-.
T Consensus 74 giIi~~~~~~~~~~~~~~~~~~~~~~iPvV~~~~ 107 (298)
T 3tb6_A 74 GLIVEPTKSALQTPNIGYYLNLEKNGIPFAMINA 107 (298)
T ss_dssp EEEECCSSTTSCCTTHHHHHHHHHTTCCEEEESS
T ss_pred EEEEecccccccCCcHHHHHHHHhcCCCEEEEec
Confidence 9998765432 333455566778999998854
No 31
>1wu2_A MOEA protein, molybdopterin biosynthesis MOEA protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.30A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1xi8_A
Probab=46.86 E-value=43 Score=35.52 Aligned_cols=88 Identities=18% Similarity=0.170 Sum_probs=59.5
Q ss_pred chhhHHHHHhCCCCcCc-CCCCeEEEEecCCCcc-c-cc------cchHHHHHHHHHHHHHcCCceeEEeccccCccccc
Q 007192 71 QGGSQAILHGVGLSEAD-MSKPQVGISSVWYEGN-T-CN------MHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISM 141 (613)
Q Consensus 71 ~a~~ra~l~a~G~~ded-~~kP~IgI~ns~~e~~-P-ch------~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~ 141 (613)
.+.+-++|.+.|+..=. ++||.|+|.+|-+|+. + +. .-.+.-...+++-+++.|+.+..+.++ .|
T Consensus 162 ~p~~i~llas~G~~~V~V~~~prv~IistGdEl~~~~g~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv--~D---- 235 (396)
T 1wu2_A 162 RPQDVAMLKALGIKKVPVKVKPKVGIIITGSELIEEPSEEGFKEGKIVETNSIMLQGLVEKFFGEPILYGVL--PD---- 235 (396)
T ss_dssp CHHHHHHHHHTTCSEEEEECCCEEEEEEECTTEESSCCHHHHHTTCEECCHHHHHHHHHHHTTCEEEEEEEE--CS----
T ss_pred cHHHHHHHHhCCCceeeecCCCEEEEEEcCcccccCCCCcccCCCcEecchHHHHHHHHHHCCCEEEEEEEe--CC----
Confidence 45677999999997655 5799999999999997 3 21 112333445677778889887766443 24
Q ss_pred CccCceecccchHHHHHHHHHHHcccCCCcEEEcc
Q 007192 142 GTKGMCFSLQSRDLIADSIETVMSAQWYDANISIP 176 (613)
Q Consensus 142 g~~GM~ysL~sRelIAdsiE~~~~a~~~Dg~V~l~ 176 (613)
.++.|...++..++. .|-+|.-+
T Consensus 236 ----------d~~~i~~~l~~a~~~--~DlvittG 258 (396)
T 1wu2_A 236 ----------DESIIKETLEKAKNE--CDIVLITG 258 (396)
T ss_dssp ----------CHHHHTTHHHHHHHC--SEEEECC-
T ss_pred ----------CHHHHHHHHHHHhhC--CCEEEEeC
Confidence 367888888877652 57444433
No 32
>2pcn_A S-adenosylmethionine:2-demethylmenaquinone methyltransferase; beta, beta alpha domain; 1.90A {Geobacillus kaustophilus}
Probab=46.54 E-value=8.6 Score=36.07 Aligned_cols=100 Identities=22% Similarity=0.320 Sum_probs=60.2
Q ss_pred ceEEeeE---EEecCHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCCcchHHHHHhCCCCCeeEEEcCCCCCCC--
Q 007192 456 LYFSGPA---LVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGG-- 530 (613)
Q Consensus 456 ~~f~GpA---~VFdseeda~~aI~~g~I~~~GdVvVIRyeGPkGgPGMpEml~~t~al~g~Gl~~~VALITDGRfSGa-- 530 (613)
.+|-||| ++|++.....++|+. ..+ |||+||-..|....-=+=|++. ...+..|. .++|+||..-=.
T Consensus 28 ~~~~G~A~Tv~~~~dn~~~~~al~~--~~~-G~VlVvd~~g~~~~a~~G~~la--~~a~~~G~---~GiVidG~vRD~~~ 99 (161)
T 2pcn_A 28 RMFSGPIATVDVFEDNVLVREALET--VPP-GTVLVVDGKGSRRVALLGDRLA--QIACERGL---AGVIIHGCIRDSAE 99 (161)
T ss_dssp SCEEEEEEEEECSSBCHHHHHHHHH--SCT-TCEEEEECTTCCSSEEECHHHH--HHHHHTTC---CEEEEEEEESCHHH
T ss_pred CEEEEEEEEEEEecCchHHHHHHHh--cCC-CCEEEEECCCCCCceeehHHHH--HHHHHcCC---cEEEecccccCHHH
Confidence 3577877 677776677777774 578 9999999777653222223333 33456675 678999943211
Q ss_pred --CCCcce--EEeccc-------ccCCCCe----EEeecCCEEEEecC
Q 007192 531 --SHGFVV--GHVCPE-------AQDGGPI----GLIQNGDIINIDVQ 563 (613)
Q Consensus 531 --s~G~~I--GHVsPE-------Aa~GGpI----AlV~dGD~I~IDi~ 563 (613)
.-++.| .-++|= ...+-|| ..|+.||+|.=|-+
T Consensus 100 i~~~~~pv~a~g~~p~~~~~~~~g~~nvpV~~gGv~V~PGD~i~aD~d 147 (161)
T 2pcn_A 100 IGAMPIGVMAIGTCPVKSKKEGKGARDVVLEFGGVRWEPGAYVYADAD 147 (161)
T ss_dssp HTTSSSEEEEEEECCSCCBCSCCSEESCCEEETTEEECTTCEEEEETT
T ss_pred HhcCCCcEEEeecCCCCCccceeeeeCCCEEECCEEECCCCEEEECCC
Confidence 112222 222332 2234455 47999999999974
No 33
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=44.93 E-value=1.2e+02 Score=28.97 Aligned_cols=89 Identities=15% Similarity=0.063 Sum_probs=53.8
Q ss_pred CCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCC
Q 007192 90 KPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWY 169 (613)
Q Consensus 90 kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~ 169 (613)
+..||++.... .+....++.+.+++...+.|-.-..+++ + . +.+--...++.++ .+.+
T Consensus 2 ~~~Ig~i~~~~----~~~~~~~~~~gi~~~a~~~g~~l~~~~~----~----~---------~~~~~~~~i~~l~-~~~v 59 (306)
T 2vk2_A 2 PLTVGFSQVGS----ESGWRAAETNVAKSEAEKRGITLKIADG----Q----Q---------KQENQIKAVRSFV-AQGV 59 (306)
T ss_dssp CCEEEEEECCC----CSHHHHHHHHHHHHHHHHHTCEEEEEEC----T----T---------CHHHHHHHHHHHH-HHTC
T ss_pred CeEEEEEeCCC----CCHHHHHHHHHHHHHHHHcCCEEEEeCC----C----C---------CHHHHHHHHHHHH-HcCC
Confidence 35789988763 3556777888888888888743222211 1 1 1222334455554 4679
Q ss_pred CcEEEccCCCCCchhhHHhhhccCCCeEEEc
Q 007192 170 DANISIPGCDKNMPGTIMAMGRLNRPGIMVY 200 (613)
Q Consensus 170 Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~ 200 (613)
||+|+.+.-.....-.+-.+...++|.|++-
T Consensus 60 dgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~ 90 (306)
T 2vk2_A 60 DAIFIAPVVATGWEPVLKEAKDAEIPVFLLD 90 (306)
T ss_dssp SEEEECCSSSSSCHHHHHHHHHTTCCEEEES
T ss_pred CEEEEeCCChhhHHHHHHHHHHCCCCEEEec
Confidence 9999876433333344544556799988874
No 34
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=44.80 E-value=1.4e+02 Score=28.06 Aligned_cols=91 Identities=9% Similarity=-0.054 Sum_probs=55.4
Q ss_pred CCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCC
Q 007192 90 KPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWY 169 (613)
Q Consensus 90 kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~ 169 (613)
+-.|||+.... -|-.+.++.+.+++...+.|-.-..+.+-.- .+.+--...++.++. +.+
T Consensus 5 ~~~Igvi~~~~----~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~---------------~~~~~~~~~~~~~~~-~~v 64 (304)
T 3o1i_D 5 DEKICAIYPHL----KDSYWLSVNYGMVSEAEKQGVNLRVLEAGGY---------------PNKSRQEQQLALCTQ-WGA 64 (304)
T ss_dssp CCEEEEEESCS----CSHHHHHHHHHHHHHHHHHTCEEEEEECSST---------------TCHHHHHHHHHHHHH-HTC
T ss_pred CcEEEEEeCCC----CCcHHHHHHHHHHHHHHHcCCeEEEEcCCCC---------------CCHHHHHHHHHHHHH-cCC
Confidence 46788887632 3456788888888888888743322221100 012233344555544 679
Q ss_pred CcEEEccCCCCCchhhHHhhhccCCCeEEEcc
Q 007192 170 DANISIPGCDKNMPGTIMAMGRLNRPGIMVYG 201 (613)
Q Consensus 170 Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~g 201 (613)
||+|+.+.-.....-.+-.+. .++|.|++-.
T Consensus 65 dgiii~~~~~~~~~~~~~~~~-~~iPvV~~~~ 95 (304)
T 3o1i_D 65 NAIILGTVDPHAYEHNLKSWV-GNTPVFATVN 95 (304)
T ss_dssp SEEEECCSSTTSSTTTHHHHT-TTSCEEECSS
T ss_pred CEEEEeCCChhHHHHHHHHHc-CCCCEEEecC
Confidence 999998655444444555555 8999888743
No 35
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=44.67 E-value=30 Score=32.35 Aligned_cols=66 Identities=12% Similarity=0.118 Sum_probs=44.7
Q ss_pred CCCeEEEEecCCCccccccchHHHHHHHHHHHH---HcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHc
Q 007192 89 SKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVE---EAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMS 165 (613)
Q Consensus 89 ~kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~---~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~ 165 (613)
++|.|+|+++-+|+.++..- +.=...+++-++ +.|..+ .+. -+.| .++.|...++..+.
T Consensus 4 ~~~rv~IistGdE~~~G~i~-Dsn~~~l~~~l~~l~~~G~~v-~~~--iv~D--------------d~~~I~~~l~~~~~ 65 (178)
T 2pbq_A 4 KKAVIGVVTISDRASKGIYE-DISGKAIIDYLKDVIITPFEV-EYR--VIPD--------------ERDLIEKTLIELAD 65 (178)
T ss_dssp -CCEEEEEEECHHHHHTSSC-CHHHHHHHHHHHHHBCSCCEE-EEE--EECS--------------CHHHHHHHHHHHHH
T ss_pred CCCEEEEEEeCCcCCCCCee-cchHHHHHHHHHHHHhCCCEE-EEE--EcCC--------------CHHHHHHHHHHHHh
Confidence 57999999999998877542 333455666555 778766 543 3445 37889999988876
Q ss_pred ccCCCcE
Q 007192 166 AQWYDAN 172 (613)
Q Consensus 166 a~~~Dg~ 172 (613)
...+|-+
T Consensus 66 ~~~~DlV 72 (178)
T 2pbq_A 66 EKGCSLI 72 (178)
T ss_dssp TSCCSEE
T ss_pred cCCCCEE
Confidence 4456633
No 36
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=44.28 E-value=1.5e+02 Score=28.10 Aligned_cols=92 Identities=9% Similarity=0.026 Sum_probs=59.3
Q ss_pred CCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCC
Q 007192 90 KPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWY 169 (613)
Q Consensus 90 kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~ 169 (613)
.-.||++-....-..-|-.+.++.+.+.+...+.|-.-+.+++ +. ... .++ +...+..+.+
T Consensus 6 s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~----~~-~~~---------~~~-----~~~~l~~~~v 66 (294)
T 3qk7_A 6 TDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPD----EP-GEK---------YQS-----LIHLVETRRV 66 (294)
T ss_dssp CCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEE----CT-TCC---------CHH-----HHHHHHHTCC
T ss_pred cceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeC----CC-hhh---------HHH-----HHHHHHcCCC
Confidence 4579998865433345667888999999999999855554443 21 110 122 2344556899
Q ss_pred CcEEEccCCCCCchhhHHhhhccCCCeEEEccC
Q 007192 170 DANISIPGCDKNMPGTIMAMGRLNRPGIMVYGG 202 (613)
Q Consensus 170 Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~gG 202 (613)
||+|+.+..... -.+-.+...++|.|++-..
T Consensus 67 dGiIi~~~~~~~--~~~~~l~~~~iPvV~~~~~ 97 (294)
T 3qk7_A 67 DALIVAHTQPED--FRLQYLQKQNFPFLALGRS 97 (294)
T ss_dssp SEEEECSCCSSC--HHHHHHHHTTCCEEEESCC
T ss_pred CEEEEeCCCCCh--HHHHHHHhCCCCEEEECCC
Confidence 999998765432 3444566789999888644
No 37
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=44.04 E-value=1.4e+02 Score=29.01 Aligned_cols=90 Identities=9% Similarity=-0.040 Sum_probs=55.3
Q ss_pred CeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCCC
Q 007192 91 PQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYD 170 (613)
Q Consensus 91 P~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~D 170 (613)
..||++.... .|-.+.++.+.+++...+.| +++-+...+ .+ +.+--...+|.++ .+.+|
T Consensus 4 ~~Igvi~~~~----~~~~~~~~~~g~~~~~~~~g---~~~~~~~~~----~~---------d~~~q~~~i~~li-~~~vd 62 (316)
T 1tjy_A 4 ERIAFIPKLV----GVGFFTSGGNGAQEAGKALG---IDVTYDGPT----EP---------SVSGQVQLVNNFV-NQGYD 62 (316)
T ss_dssp CEEEEECSSS----SSHHHHHHHHHHHHHHHHHT---CEEEECCCS----SC---------CHHHHHHHHHHHH-HTTCS
T ss_pred CEEEEEeCCC----CChHHHHHHHHHHHHHHHhC---CEEEEECCC----CC---------CHHHHHHHHHHHH-HcCCC
Confidence 5789886532 34567778888888888887 333221111 11 2233345567666 46899
Q ss_pred cEEEccCCCCCchhhHHhhhccCCCeEEEcc
Q 007192 171 ANISIPGCDKNMPGTIMAMGRLNRPGIMVYG 201 (613)
Q Consensus 171 g~V~l~gCDK~vPG~lMaaaRlniPsi~v~g 201 (613)
|+|+.+.-...+...+--+...++|.|++-.
T Consensus 63 giii~~~~~~~~~~~~~~a~~~gipvV~~d~ 93 (316)
T 1tjy_A 63 AIIVSAVSPDGLCPALKRAMQRGVKILTWDS 93 (316)
T ss_dssp EEEECCSSSSTTHHHHHHHHHTTCEEEEESS
T ss_pred EEEEeCCCHHHHHHHHHHHHHCcCEEEEecC
Confidence 9998765434334445555678999988753
No 38
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=43.85 E-value=1.5e+02 Score=27.82 Aligned_cols=87 Identities=13% Similarity=0.167 Sum_probs=56.1
Q ss_pred CCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCC
Q 007192 90 KPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWY 169 (613)
Q Consensus 90 kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~ 169 (613)
.-.|||+.... -|-.+.++.+.+++...+.|-.-..+.+ + . +.+--...++.+ ..+.+
T Consensus 7 s~~Igvi~~~~----~~~~~~~~~~gi~~~~~~~g~~~~~~~~----~----~---------~~~~~~~~~~~l-~~~~v 64 (276)
T 3jy6_A 7 SKLIAVIVANI----DDYFSTELFKGISSILESRGYIGVLFDA----N----A---------DIEREKTLLRAI-GSRGF 64 (276)
T ss_dssp CCEEEEEESCT----TSHHHHHHHHHHHHHHHTTTCEEEEEEC----T----T---------CHHHHHHHHHHH-HTTTC
T ss_pred CcEEEEEeCCC----CchHHHHHHHHHHHHHHHCCCEEEEEeC----C----C---------CHHHHHHHHHHH-HhCCC
Confidence 46799987543 3456788888888888888743333221 1 0 122223344444 46789
Q ss_pred CcEEEccCCCCCchhhHHhhhccCCCeEEEcc
Q 007192 170 DANISIPGCDKNMPGTIMAMGRLNRPGIMVYG 201 (613)
Q Consensus 170 Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~g 201 (613)
||+|+.+.-. +..+--+...++|.|++-.
T Consensus 65 dgiIi~~~~~---~~~~~~l~~~~iPvV~i~~ 93 (276)
T 3jy6_A 65 DGLILQSFSN---PQTVQEILHQQMPVVSVDR 93 (276)
T ss_dssp SEEEEESSCC---HHHHHHHHTTSSCEEEESC
T ss_pred CEEEEecCCc---HHHHHHHHHCCCCEEEEec
Confidence 9999987655 5566666778999998853
No 39
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=43.17 E-value=1.4e+02 Score=28.27 Aligned_cols=91 Identities=7% Similarity=-0.131 Sum_probs=56.2
Q ss_pred CCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCC
Q 007192 90 KPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWY 169 (613)
Q Consensus 90 kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~ 169 (613)
+..|+++.... -|-.+.++.+.+++...+.|-.-..+. .++ . +.+--...++.++ .+.+
T Consensus 4 ~~~I~~i~~~~----~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~~----~---------~~~~~~~~i~~l~-~~~v 62 (305)
T 3g1w_A 4 NETYMMITFQS----GMDYWKRCLKGFEDAAQALNVTVEYRG---AAQ----Y---------DIQEQITVLEQAI-AKNP 62 (305)
T ss_dssp -CEEEEEESST----TSTHHHHHHHHHHHHHHHHTCEEEEEE---CSS----S---------CHHHHHHHHHHHH-HHCC
T ss_pred CceEEEEEccC----CChHHHHHHHHHHHHHHHcCCEEEEeC---CCc----C---------CHHHHHHHHHHHH-HhCC
Confidence 45678777643 244678888999999988874332211 111 1 1233334455554 4689
Q ss_pred CcEEEccCCCCCchhhHHhhhccCCCeEEEcc
Q 007192 170 DANISIPGCDKNMPGTIMAMGRLNRPGIMVYG 201 (613)
Q Consensus 170 Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~g 201 (613)
||+|+.+.-.....-.+-.+...++|.|++-.
T Consensus 63 dgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~ 94 (305)
T 3g1w_A 63 AGIAISAIDPVELTDTINKAVDAGIPIVLFDS 94 (305)
T ss_dssp SEEEECCSSTTTTHHHHHHHHHTTCCEEEESS
T ss_pred CEEEEcCCCHHHHHHHHHHHHHCCCcEEEECC
Confidence 99999775444445566666778999888764
No 40
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=41.26 E-value=2.2e+02 Score=27.81 Aligned_cols=102 Identities=10% Similarity=0.018 Sum_probs=62.8
Q ss_pred HHHHHhCCCCcCcCC-------CCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCce
Q 007192 75 QAILHGVGLSEADMS-------KPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMC 147 (613)
Q Consensus 75 ra~l~a~G~~ded~~-------kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ 147 (613)
+...+.+||...... .-.||++.... -|..+.++.+.+.+...+.|-.-+.+++ +.
T Consensus 46 ~~~~~~lgY~pn~~a~~l~~~~~~~Ig~i~~~~----~~~~~~~~~~gi~~~a~~~g~~~~~~~~----~~--------- 108 (344)
T 3kjx_A 46 LAAAKELGYVPNKIAGALASNRVNLVAVIIPSL----SNMVFPEVLTGINQVLEDTELQPVVGVT----DY--------- 108 (344)
T ss_dssp HHHHHHHTCCCCCCCSCSTTSCCSEEEEEESCS----SSSSHHHHHHHHHHHHTSSSSEEEEEEC----TT---------
T ss_pred HHHHHHhCCCCCHHHHHhhcCCCCEEEEEeCCC----CcHHHHHHHHHHHHHHHHCCCEEEEEeC----CC---------
Confidence 445667788766532 35799987543 2456788888888888887644332221 10
Q ss_pred ecccchHHHHHHHHHHHcccCCCcEEEccCCCCCchhhHHhhhccCCCeEEEc
Q 007192 148 FSLQSRDLIADSIETVMSAQWYDANISIPGCDKNMPGTIMAMGRLNRPGIMVY 200 (613)
Q Consensus 148 ysL~sRelIAdsiE~~~~a~~~Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~ 200 (613)
+.+--...++.++ .+.+||+|+.+.. .. +-.+-.+...++|.|++-
T Consensus 109 ----~~~~~~~~i~~l~-~~~vdGiIi~~~~-~~-~~~~~~l~~~~iPvV~i~ 154 (344)
T 3kjx_A 109 ----LPEKEEKVLYEML-SWRPSGVIIAGLE-HS-EAARAMLDAAGIPVVEIM 154 (344)
T ss_dssp ----CHHHHHHHHHHHH-TTCCSEEEEECSC-CC-HHHHHHHHHCSSCEEEEE
T ss_pred ----CHHHHHHHHHHHH-hCCCCEEEEECCC-CC-HHHHHHHHhCCCCEEEEe
Confidence 1223334455544 5789999998643 22 234444567899999984
No 41
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=40.88 E-value=1.7e+02 Score=27.64 Aligned_cols=90 Identities=10% Similarity=0.027 Sum_probs=53.0
Q ss_pred CeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCCC
Q 007192 91 PQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYD 170 (613)
Q Consensus 91 P~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~D 170 (613)
..||++... ..|-.+.++.+.+.+...+.|=.-+.+++. ++ . +.+.-.+.++.++ .+.+|
T Consensus 2 ~~Igvi~~~----~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~--~~----~---------~~~~~~~~~~~~~-~~~vd 61 (288)
T 1gud_A 2 AEYAVVLKT----LSNPFWVDMKKGIEDEAKTLGVSVDIFASP--SE----G---------DFQSQLQLFEDLS-NKNYK 61 (288)
T ss_dssp CEEEEEESC----SSSHHHHHHHHHHHHHHHHHTCCEEEEECS--ST----T---------CHHHHHHHHHHHH-TSSEE
T ss_pred cEEEEEeCC----CCchHHHHHHHHHHHHHHHcCCEEEEeCCC--CC----C---------CHHHHHHHHHHHH-HcCCC
Confidence 468888643 235567788888888888888322222210 11 1 1223334456555 46799
Q ss_pred cEEEccCCCCCchhhHHhhhccCCCeEEEc
Q 007192 171 ANISIPGCDKNMPGTIMAMGRLNRPGIMVY 200 (613)
Q Consensus 171 g~V~l~gCDK~vPG~lMaaaRlniPsi~v~ 200 (613)
|+|+.+.-.+...-.+-.+...++|.|++-
T Consensus 62 giIi~~~~~~~~~~~~~~~~~~~iPvV~~~ 91 (288)
T 1gud_A 62 GIAFAPLSSVNLVMPVARAWKKGIYLVNLD 91 (288)
T ss_dssp EEEECCSSSSTTHHHHHHHHHTTCEEEEES
T ss_pred EEEEeCCChHHHHHHHHHHHHCCCeEEEEC
Confidence 999976533332234555556799988874
No 42
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=40.66 E-value=1e+02 Score=28.94 Aligned_cols=90 Identities=18% Similarity=0.123 Sum_probs=57.0
Q ss_pred CCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCC
Q 007192 90 KPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWY 169 (613)
Q Consensus 90 kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~ 169 (613)
.-.||++.... -|..+.++.+.+++...+.|-.-..+++ + . +-+-....++.++ .+.+
T Consensus 5 ~~~Ig~i~~~~----~~~~~~~~~~gi~~~a~~~g~~~~~~~~----~----~---------~~~~~~~~~~~l~-~~~v 62 (291)
T 3l49_A 5 GKTIGITAIGT----DHDWDLKAYQAQIAEIERLGGTAIALDA----G----R---------NDQTQVSQIQTLI-AQKP 62 (291)
T ss_dssp TCEEEEEESCC----SSHHHHHHHHHHHHHHHHTTCEEEEEEC----T----T---------CHHHHHHHHHHHH-HHCC
T ss_pred CcEEEEEeCCC----CChHHHHHHHHHHHHHHHcCCEEEEEcC----C----C---------CHHHHHHHHHHHH-HcCC
Confidence 46799987643 2556678899999999988744333321 1 1 1122334445544 4679
Q ss_pred CcEEEccCCCCCchhhHHhhhccCCCeEEEcc
Q 007192 170 DANISIPGCDKNMPGTIMAMGRLNRPGIMVYG 201 (613)
Q Consensus 170 Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~g 201 (613)
||+|+.+.-.......+-.+...++|.|++-.
T Consensus 63 dgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~ 94 (291)
T 3l49_A 63 DAIIEQLGNLDVLNPWLQKINDAGIPLFTVDT 94 (291)
T ss_dssp SEEEEESSCHHHHHHHHHHHHHTTCCEEEESC
T ss_pred CEEEEeCCChhhhHHHHHHHHHCCCcEEEecC
Confidence 99998765434455556667778999888753
No 43
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=40.30 E-value=2.1e+02 Score=27.32 Aligned_cols=89 Identities=12% Similarity=0.083 Sum_probs=51.9
Q ss_pred CeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCCC
Q 007192 91 PQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYD 170 (613)
Q Consensus 91 P~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~D 170 (613)
..||++.... .+ .+.++.+.+++...+.|-. +.+ ...++ . +.+--...++.++ .+.+|
T Consensus 2 ~~Ig~i~~~~----~~-~~~~~~~gi~~~~~~~g~~-~~~--~~~~~----~---------~~~~~~~~i~~l~-~~~vd 59 (313)
T 2h3h_A 2 LTIGVIGKSV----HP-YWSQVEQGVKAAGKALGVD-TKF--FVPQK----E---------DINAQLQMLESFI-AEGVN 59 (313)
T ss_dssp CEEEEECSCS----SH-HHHHHHHHHHHHHHHHTCE-EEE--ECCSS----S---------CHHHHHHHHHHHH-HTTCS
T ss_pred eEEEEEeCCC----cH-HHHHHHHHHHHHHHHcCCE-EEE--ECCCC----C---------CHHHHHHHHHHHH-HcCCC
Confidence 4688886532 24 6778888888888887722 221 11111 1 1222334456555 36799
Q ss_pred cEEEccCCCCCchhhHHhhhccCCCeEEEcc
Q 007192 171 ANISIPGCDKNMPGTIMAMGRLNRPGIMVYG 201 (613)
Q Consensus 171 g~V~l~gCDK~vPG~lMaaaRlniPsi~v~g 201 (613)
|+|+.+.-.......+-.+...++|.|++..
T Consensus 60 giIi~~~~~~~~~~~~~~~~~~~iPvV~~~~ 90 (313)
T 2h3h_A 60 GIAIAPSDPTAVIPTIKKALEMGIPVVTLDT 90 (313)
T ss_dssp EEEECCSSTTTTHHHHHHHHHTTCCEEEESS
T ss_pred EEEEeCCChHHHHHHHHHHHHCCCeEEEeCC
Confidence 9998765433332344445568999988754
No 44
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=39.13 E-value=31 Score=35.03 Aligned_cols=45 Identities=18% Similarity=0.134 Sum_probs=25.6
Q ss_pred CCCCeEEEEecCCCccc-cccchHHHHHHHHHHHHHcCCceeEEec
Q 007192 88 MSKPQVGISSVWYEGNT-CNMHLLRLSEAVKRGVEEAGMVGFRFNT 132 (613)
Q Consensus 88 ~~kP~IgI~ns~~e~~P-ch~hl~~la~~Vk~gI~~aGG~p~ef~t 132 (613)
+.||+|||......... -.....-+.+.+.+.++++|+.+..++.
T Consensus 28 ~~~P~IGI~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~vv~~ 73 (315)
T 1l9x_A 28 AKKPIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRL 73 (315)
T ss_dssp CCCCEEEEECEECCSHHHHTTCSEEEEHHHHHHHHHTTCEEEEECS
T ss_pred CCCCEEEEECCcccccccccCcceehHHHHHHHHHHCCCEEEEEec
Confidence 56999999976543210 0000111234456667778998877653
No 45
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=36.23 E-value=2.3e+02 Score=26.44 Aligned_cols=88 Identities=19% Similarity=0.172 Sum_probs=51.7
Q ss_pred CeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCCC
Q 007192 91 PQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYD 170 (613)
Q Consensus 91 P~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~D 170 (613)
-.||++.... .|..+.++.+.+++...+.|-.-.. ++. .. +.+--...++.++ .+.+|
T Consensus 3 ~~Ig~i~~~~----~~~~~~~~~~gi~~~~~~~g~~~~~------~~~--~~---------~~~~~~~~~~~l~-~~~vd 60 (290)
T 2fn9_A 3 GKMAIVISTL----NNPWFVVLAETAKQRAEQLGYEATI------FDS--QN---------DTAKESAHFDAII-AAGYD 60 (290)
T ss_dssp CEEEEEESCS----SSHHHHHHHHHHHHHHHHTTCEEEE------EEC--TT---------CHHHHHHHHHHHH-HTTCS
T ss_pred eEEEEEeCCC----CChHHHHHHHHHHHHHHHcCCEEEE------eCC--CC---------CHHHHHHHHHHHH-HcCCC
Confidence 4688887542 2456778888888888887743222 221 01 1222334456555 46799
Q ss_pred cEEEccCCCCC-chhhHHhhhccCCCeEEEcc
Q 007192 171 ANISIPGCDKN-MPGTIMAMGRLNRPGIMVYG 201 (613)
Q Consensus 171 g~V~l~gCDK~-vPG~lMaaaRlniPsi~v~g 201 (613)
|+|+.+ ++.. ....+--+...++|.|++..
T Consensus 61 giI~~~-~~~~~~~~~~~~~~~~~iPvV~~~~ 91 (290)
T 2fn9_A 61 AIIFNP-TDADGSIANVKRAKEAGIPVFCVDR 91 (290)
T ss_dssp EEEECC-SCTTTTHHHHHHHHHTTCCEEEESS
T ss_pred EEEEec-CChHHHHHHHHHHHHCCCeEEEEec
Confidence 999875 4432 22234344567999988753
No 46
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=35.75 E-value=2.7e+02 Score=26.13 Aligned_cols=87 Identities=16% Similarity=0.169 Sum_probs=51.7
Q ss_pred CeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCCC
Q 007192 91 PQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYD 170 (613)
Q Consensus 91 P~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~D 170 (613)
-.||++.... .|-.+.++.+.+++...+.|=..+.+++ + . +.+--...++.++ .+.+|
T Consensus 2 ~~Igvi~~~~----~~~f~~~~~~gi~~~~~~~g~~~~~~~~----~----~---------~~~~~~~~i~~l~-~~~vd 59 (283)
T 2ioy_A 2 KTIGLVISTL----NNPFFVTLKNGAEEKAKELGYKIIVEDS----Q----N---------DSSKELSNVEDLI-QQKVD 59 (283)
T ss_dssp CEEEEEESCS----SSHHHHHHHHHHHHHHHHHTCEEEEEEC----T----T---------CHHHHHHHHHHHH-HTTCS
T ss_pred eEEEEEecCC----CCHHHHHHHHHHHHHHHhcCcEEEEecC----C----C---------CHHHHHHHHHHHH-HcCCC
Confidence 3688876432 2456778888888888888743322211 1 1 1222334456665 67899
Q ss_pred cEEEccCCCC-CchhhHHhhhccCCCeEEEc
Q 007192 171 ANISIPGCDK-NMPGTIMAMGRLNRPGIMVY 200 (613)
Q Consensus 171 g~V~l~gCDK-~vPG~lMaaaRlniPsi~v~ 200 (613)
|+|+.+ +|. ...-.+-.+...++|.|++-
T Consensus 60 giIi~~-~~~~~~~~~~~~~~~~~iPvV~~~ 89 (283)
T 2ioy_A 60 VLLINP-VDSDAVVTAIKEANSKNIPVITID 89 (283)
T ss_dssp EEEECC-SSTTTTHHHHHHHHHTTCCEEEES
T ss_pred EEEEeC-CchhhhHHHHHHHHHCCCeEEEec
Confidence 999865 342 22224444556799988874
No 47
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=34.77 E-value=1.3e+02 Score=28.40 Aligned_cols=91 Identities=15% Similarity=0.038 Sum_probs=52.4
Q ss_pred CCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCC
Q 007192 90 KPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWY 169 (613)
Q Consensus 90 kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~ 169 (613)
...||++.... .|..+.++.+.+++...+.| +++-+...++ . +.+-..+.++.++ .+.+
T Consensus 4 ~~~Ig~i~~~~----~~~~~~~~~~g~~~~~~~~g---~~~~~~~~~~----~---------~~~~~~~~~~~l~-~~~v 62 (303)
T 3d02_A 4 EKTVVNISKVD----GMPWFNRMGEGVVQAGKEFN---LNASQVGPSS----T---------DAPQQVKIIEDLI-ARKV 62 (303)
T ss_dssp CEEEEEECSCS----SCHHHHHHHHHHHHHHHHTT---EEEEEECCSS----S---------CHHHHHHHHHHHH-HTTC
T ss_pred ceEEEEEeccC----CChHHHHHHHHHHHHHHHcC---CEEEEECCCC----C---------CHHHHHHHHHHHH-HcCC
Confidence 35789887543 24566778888888888886 3322111111 1 2233345566665 4679
Q ss_pred CcEEEccCCCCCchhhHHhhhccCCCeEEEcc
Q 007192 170 DANISIPGCDKNMPGTIMAMGRLNRPGIMVYG 201 (613)
Q Consensus 170 Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~g 201 (613)
||+|+.+.-.......+--+...++|.|++-.
T Consensus 63 dgiii~~~~~~~~~~~~~~~~~~~ipvV~~~~ 94 (303)
T 3d02_A 63 DAITIVPNDANVLEPVFKKARDAGIVVLTNES 94 (303)
T ss_dssp SEEEECCSCHHHHHHHHHHHHHTTCEEEEESC
T ss_pred CEEEEecCChHHHHHHHHHHHHCCCeEEEEec
Confidence 99998765211111223334567999998854
No 48
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=34.59 E-value=2.9e+02 Score=26.63 Aligned_cols=111 Identities=6% Similarity=-0.081 Sum_probs=62.2
Q ss_pred HHHHHhCCCCcCcC-----CCCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceec
Q 007192 75 QAILHGVGLSEADM-----SKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFS 149 (613)
Q Consensus 75 ra~l~a~G~~ded~-----~kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ys 149 (613)
+...+.+||..... +...||++.... ..|-.+.++.+.+++...+.|-.-..+... ++. +.
T Consensus 23 ~~aa~elgY~pn~~Ar~~~~~~~Igvi~~~~---~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~--~~~--~~------- 88 (342)
T 1jx6_A 23 NALSEAVRAQPVPLSKPTQRPIKISVVYPGQ---QVSDYWVRNIASFEKRLYKLNINYQLNQVF--TRP--NA------- 88 (342)
T ss_dssp HHHHHHHHSCCCCCSSCCSSCEEEEEEECCC---SSCCHHHHHHHHHHHHHHHTTCCEEEEEEE--CCT--TC-------
T ss_pred HHHHHHhcCCCCccccccCCceEEEEEecCC---cccHHHHHHHHHHHHHHHHcCCeEEEEecC--CCC--cc-------
Confidence 34455567665543 236799987531 124467788888888888887432221100 110 00
Q ss_pred ccchHHHHHHHHHHHcccCCCcEEEccCCCCCchhhHHhhhccCCCeEEEccCC
Q 007192 150 LQSRDLIADSIETVMSAQWYDANISIPGCDKNMPGTIMAMGRLNRPGIMVYGGT 203 (613)
Q Consensus 150 L~sRelIAdsiE~~~~a~~~Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~gGp 203 (613)
+.+--.+.++.+++ +.+||+|+ .+......-.+-.+...++|.|++.+.+
T Consensus 89 --~~~~~~~~i~~l~~-~~vdgiIi-~~~~~~~~~~~~~~~~~~ip~V~~~~~~ 138 (342)
T 1jx6_A 89 --DIKQQSLSLMEALK-SKSDYLIF-TLDTTRHRKFVEHVLDSTNTKLILQNIT 138 (342)
T ss_dssp --CHHHHHHHHHHHHH-TTCSEEEE-CCSSSTTHHHHHHHHHHCSCEEEEETCC
T ss_pred --CHHHHHHHHHHHHh-cCCCEEEE-eCChHhHHHHHHHHHHcCCCEEEEecCC
Confidence 12233345566554 67999999 4433323344545556799999885553
No 49
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=34.55 E-value=2.1e+02 Score=26.87 Aligned_cols=89 Identities=13% Similarity=0.024 Sum_probs=55.8
Q ss_pred CCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCC
Q 007192 90 KPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWY 169 (613)
Q Consensus 90 kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~ 169 (613)
...||++.... -|..+.++.+.+++...+.|-.-..+.+- . +.+--...++.+ ..+.+
T Consensus 8 ~~~Igvv~~~~----~~~~~~~~~~gi~~~a~~~g~~~~~~~~~--------~---------~~~~~~~~~~~l-~~~~v 65 (291)
T 3egc_A 8 SNVVGLIVSDI----ENVFFAEVASGVESEARHKGYSVLLANTA--------E---------DIVREREAVGQF-FERRV 65 (291)
T ss_dssp CCEEEEEESCT----TSHHHHHHHHHHHHHHHHTTCEEEEEECT--------T---------CHHHHHHHHHHH-HHTTC
T ss_pred CcEEEEEECCC----cchHHHHHHHHHHHHHHHCCCEEEEEeCC--------C---------CHHHHHHHHHHH-HHCCC
Confidence 46899987643 25567888999999998887443333211 0 112223344443 46789
Q ss_pred CcEEEccCCCCCchhhHHhhhccCCCeEEEccC
Q 007192 170 DANISIPGCDKNMPGTIMAMGRLNRPGIMVYGG 202 (613)
Q Consensus 170 Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~gG 202 (613)
||+|+.+.- . ..-.+-.+...++|.|++-.-
T Consensus 66 dgiIi~~~~-~-~~~~~~~~~~~~iPvV~~~~~ 96 (291)
T 3egc_A 66 DGLILAPSE-G-EHDYLRTELPKTFPIVAVNRE 96 (291)
T ss_dssp SEEEECCCS-S-CCHHHHHSSCTTSCEEEESSC
T ss_pred CEEEEeCCC-C-ChHHHHHhhccCCCEEEEecc
Confidence 999987653 3 334555566789999987643
No 50
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=34.52 E-value=2.5e+02 Score=26.49 Aligned_cols=89 Identities=13% Similarity=0.040 Sum_probs=53.3
Q ss_pred CCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCC
Q 007192 90 KPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWY 169 (613)
Q Consensus 90 kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~ 169 (613)
...||++.... .|-.+.++.+.+++...+.|-.-..+.+ + . +.+--...++.++ .+.+
T Consensus 20 ~~~Ig~i~~~~----~~~~~~~~~~gi~~~~~~~g~~~~~~~~----~----~---------~~~~~~~~~~~l~-~~~v 77 (293)
T 2iks_A 20 TRSIGLVIPDL----ENTSYTRIANYLERQARQRGYQLLIACS----E----D---------QPDNEMRCIEHLL-QRQV 77 (293)
T ss_dssp CCEEEEEESCS----CSHHHHHHHHHHHHHHHHTTCEEEEEEC----T----T---------CHHHHHHHHHHHH-HTTC
T ss_pred CcEEEEEeCCC----cCcHHHHHHHHHHHHHHHCCCEEEEEcC----C----C---------CHHHHHHHHHHHH-HcCC
Confidence 46899987532 3556788888888888888733222111 1 0 1222234455554 5679
Q ss_pred CcEEEccCCCCCchhhHHhhhccCCCeEEEcc
Q 007192 170 DANISIPGCDKNMPGTIMAMGRLNRPGIMVYG 201 (613)
Q Consensus 170 Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~g 201 (613)
||+|+.+. +..-+..+-.+...++|.|++-.
T Consensus 78 dgii~~~~-~~~~~~~~~~~~~~~iPvV~~~~ 108 (293)
T 2iks_A 78 DAIIVSTS-LPPEHPFYQRWANDPFPIVALDR 108 (293)
T ss_dssp SEEEECCS-SCTTCHHHHTTTTSSSCEEEEES
T ss_pred CEEEEeCC-CCCcHHHHHHHHhCCCCEEEECC
Confidence 99998764 32223344445567999888754
No 51
>1vkm_A Conserved hypothetical protein TM1464; indigoidine synthase A-like fold, structural genomics, joint for structural genomics, JCSG; HET: MSE UNL; 1.90A {Thermotoga maritima} SCOP: c.138.1.1
Probab=34.33 E-value=32 Score=35.64 Aligned_cols=108 Identities=23% Similarity=0.264 Sum_probs=67.8
Q ss_pred CCCeEEEEecCCCccccccch---HHHHHHHHHHHHHcCCceeEEeccccCcccccCccCcee-----------cccchH
Q 007192 89 SKPQVGISSVWYEGNTCNMHL---LRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCF-----------SLQSRD 154 (613)
Q Consensus 89 ~kP~IgI~ns~~e~~Pch~hl---~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~y-----------sL~sRe 154 (613)
.||+|+.-+|- ...=+++ .+++..|.+-|++.|.+|- ||++-||.-. -|+.- .=.||.
T Consensus 22 ~~PVVALESTI---ItHGlPyP~N~e~A~~vE~~vR~~GavPA---TIaii~G~~~--VGL~~~eLe~la~~~~~K~SrR 93 (297)
T 1vkm_A 22 GKPVVGMETTV---FVHGLPRKEAIELFRRAKEISREKGFQLA---VIGILKGKIV--AGMSEEELEAMMREGADKVGTR 93 (297)
T ss_dssp TSCEEEECSHH---HHTSSCHHHHHHHHHHHHHHHHHHTCEEE---EEEEETTEEE--ESCCHHHHHHHHHHCCEEECGG
T ss_pred CCCEEEeehhh---hhCCCCCchHHHHHHHHHHHHHhCCCccc---eEEEECCEEE--ECCCHHHHHHHhcCCCccccHh
Confidence 48999987763 2222233 5789999999999999996 5555577532 12211 011222
Q ss_pred HHHHHHHHHHcccCCCcEEEccCCCCCchhhHHhhhccCCCeEEEccCCCCCcccCCccccee-hHH
Q 007192 155 LIADSIETVMSAQWYDANISIPGCDKNMPGTIMAMGRLNRPGIMVYGGTIKPGHFQGHTYDIV-SAF 220 (613)
Q Consensus 155 lIAdsiE~~~~a~~~Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~gGpm~~G~~~g~~~~~~-~~~ 220 (613)
-++-.+ +...+| .-|+-+.|+.|.+.+|+ ||++||- -|.++| .+|+. |+-
T Consensus 94 Dl~~~~-----a~g~~G-------aTTVaaTm~lA~~AGI~-VFaTGGi--GGVHRg-t~DISaDL~ 144 (297)
T 1vkm_A 94 EIPIVV-----AEGKNA-------ATTVSATIFLSRRIGIE-VVVTGGT--GGVHPG-RVDVSQDLT 144 (297)
T ss_dssp GHHHHH-----HHTCCE-------EECHHHHHHHHHHHTCC-EEECSCB--CCBCTT-SSCBCHHHH
T ss_pred hHHHHH-----hCCCCc-------hhhHHHHHHHHHHcCCc-EEEeccc--ccccCC-CcccchhHH
Confidence 222222 223333 35778888999999997 8999996 566777 77776 433
No 52
>2b99_A Riboflavin synthase; lumazine riboflavin, transferase; HET: RDL; 2.22A {Methanocaldococcus jannaschii} PDB: 2b98_A*
Probab=33.55 E-value=43 Score=31.61 Aligned_cols=82 Identities=15% Similarity=0.146 Sum_probs=54.1
Q ss_pred eEEEE-ecCCCccccccchHHHHHHHHHHHHHcCCceeE--EeccccCcccccCccCceecccchHHHHHHHHHHHcccC
Q 007192 92 QVGIS-SVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFR--FNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQW 168 (613)
Q Consensus 92 ~IgI~-ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~e--f~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~ 168 (613)
.|||+ +.||+ ++|.+-.++.+...|...-. +.+|+. |-|| +.+ ..+.+...
T Consensus 4 ri~IV~arfn~--------~~Ll~gA~~~L~~~G~~~~i~~~~VPGa------------fEiP---~aa---k~la~~~~ 57 (156)
T 2b99_A 4 KVGIVDTTFAR--------VDMASIAIKKLKELSPNIKIIRKTVPGI------------KDLP---VAC---KKLLEEEG 57 (156)
T ss_dssp EEEEEEESSCS--------SCCHHHHHHHHHHHCTTCEEEEEEESSG------------GGHH---HHH---HHHHHHSC
T ss_pred EEEEEEEecch--------HHHHHHHHHHHHHcCCCCeEEEEECCcH------------HHHH---HHH---HHHHhcCC
Confidence 46665 66888 45567778888888854321 455543 3344 222 33345578
Q ss_pred CCcEEEccC----------CCCCchhhHHhhhccCCCeEEE
Q 007192 169 YDANISIPG----------CDKNMPGTIMAMGRLNRPGIMV 199 (613)
Q Consensus 169 ~Dg~V~l~g----------CDK~vPG~lMaaaRlniPsi~v 199 (613)
|||+|+|+- |+-..=|.+...+..|+|.+|.
T Consensus 58 yDavIaLG~VG~T~Hfd~Va~~vs~Gl~~v~L~~~vPV~~g 98 (156)
T 2b99_A 58 CDIVMALGMPGKAEKDKVCAHEASLGLMLAQLMTNKHIIEV 98 (156)
T ss_dssp CSEEEEEECCCSSHHHHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCEEEEecccCCcchhHHHHHHHHHHHHHHHhhhCCCEEEE
Confidence 999999974 4444567777778899999996
No 53
>1zym_A Enzyme I; phosphotransferase; 2.50A {Escherichia coli} SCOP: a.60.10.1 c.8.1.2 PDB: 1eza_A 1ezb_A 1ezc_A 1ezd_A 2eza_A 2ezb_A 2ezc_A 3ezb_A 3eze_A 3eza_A
Probab=33.46 E-value=17 Score=36.52 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=25.9
Q ss_pred eEEeecCCEEEEecCCCEEEEecCHHHHHH
Q 007192 549 IGLIQNGDIINIDVQKRRIDVQLTDEEMEE 578 (613)
Q Consensus 549 IAlV~dGD~I~IDi~~r~L~l~v~~eeL~~ 578 (613)
.-.+++||.|.||-.++.+-+.-+++++++
T Consensus 209 ~~~~~~G~~v~vDg~~G~v~~~p~~~~~~~ 238 (258)
T 1zym_A 209 TSQVKNDDYLILDAVNNQVYVNPTNEVIDK 238 (258)
T ss_dssp HHHCCTTCEEEECCSSCCEEESCCHHHHHH
T ss_pred HHhCCCCCEEEEECCCCeEEECcCHHHHHH
Confidence 345899999999999999999988888843
No 54
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=33.43 E-value=48 Score=26.56 Aligned_cols=40 Identities=25% Similarity=0.295 Sum_probs=31.4
Q ss_pred eEEeeEE-EecCHHHHHHHHh--CCCCCCCCeEEEEeCCCCCCC
Q 007192 457 YFSGPAL-VFEGEESMIAAIS--EDPMSFKGKVVVIRGEGPKGG 497 (613)
Q Consensus 457 ~f~GpA~-VFdseeda~~aI~--~g~I~~~GdVvVIRyeGPkGg 497 (613)
..+|=|- -|+++++|.+|+. +|..-. |-.|.+++.-|++.
T Consensus 51 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~v~~a~~~~~ 93 (96)
T 1fjc_A 51 KSKGIAYIEFKSEADAEKNLEEKQGAEID-GRSVSLYYTGEKGG 93 (96)
T ss_dssp EEEEEEEEEESSHHHHHHHHHHTTEEEET-TEEEEEEECSSSCC
T ss_pred CcceEEEEEECCHHHHHHHHHHhCCCEEC-CeEEEEEEcCCCCC
Confidence 4577784 4999999999997 554445 88999999988754
No 55
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=32.49 E-value=2.8e+02 Score=25.86 Aligned_cols=94 Identities=7% Similarity=-0.033 Sum_probs=54.0
Q ss_pred CCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCC
Q 007192 90 KPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWY 169 (613)
Q Consensus 90 kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~ 169 (613)
...||++....+ .-+..+.++.+.+++...+.| +++-+... | +.. +.+--...++.++ .+.+
T Consensus 5 ~~~Ig~v~~~~~--~~~~~~~~~~~gi~~~a~~~g---~~~~~~~~-~--~~~---------~~~~~~~~~~~l~-~~~v 66 (289)
T 3brs_A 5 QYYMICIPKVLD--DSSDFWSVLVEGAQMAAKEYE---IKLEFMAP-E--KEE---------DYLVQNELIEEAI-KRKP 66 (289)
T ss_dssp CCEEEEECSCCC--SSSHHHHHHHHHHHHHHHHHT---CEEEECCC-S--STT---------CHHHHHHHHHHHH-HTCC
T ss_pred CcEEEEEeCCCC--CCchHHHHHHHHHHHHHHHcC---CEEEEecC-C--CCC---------CHHHHHHHHHHHH-HhCC
Confidence 457999875321 114467788888888888887 23222111 1 000 1233334456555 4679
Q ss_pred CcEEEccCCCCCchhhHHhhhccCCCeEEEcc
Q 007192 170 DANISIPGCDKNMPGTIMAMGRLNRPGIMVYG 201 (613)
Q Consensus 170 Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~g 201 (613)
||+|+.+.-...+.-.+--+...++|.|++-.
T Consensus 67 dgii~~~~~~~~~~~~~~~~~~~~iPvV~~~~ 98 (289)
T 3brs_A 67 DVILLAAADYEKTYDAAKEIKDAGIKLIVIDS 98 (289)
T ss_dssp SEEEECCSCTTTTHHHHTTTGGGTCEEEEESS
T ss_pred CEEEEeCCChHHhHHHHHHHHHCCCcEEEECC
Confidence 99998864333332344445567999888743
No 56
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=31.07 E-value=2.5e+02 Score=26.32 Aligned_cols=90 Identities=14% Similarity=0.123 Sum_probs=53.2
Q ss_pred CeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCCC
Q 007192 91 PQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWYD 170 (613)
Q Consensus 91 P~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~D 170 (613)
..|||+.... -|-.+.++.+.+++...+.|-+-+.+ ++. .. +.+.-...++.++ .+.+|
T Consensus 3 ~~Igvi~~~~----~~~~~~~~~~gi~~~a~~~g~~~~~~-----~~~--~~---------~~~~~~~~~~~~~-~~~vd 61 (309)
T 2fvy_A 3 TRIGVTIYKY----DDNFMSVVRKAIEQDAKAAPDVQLLM-----NDS--QN---------DQSKQNDQIDVLL-AKGVK 61 (309)
T ss_dssp EEEEEEESCT----TSHHHHHHHHHHHHHHHTCTTEEEEE-----EEC--TT---------CHHHHHHHHHHHH-HTTCS
T ss_pred cEEEEEeccC----CcHHHHHHHHHHHHHHHhcCCeEEEE-----ecC--CC---------CHHHHHHHHHHHH-HcCCC
Confidence 4688886532 24567788888888888887411111 111 11 1233344556655 56899
Q ss_pred cEEEccCCCCCchhhHHhhhccCCCeEEEcc
Q 007192 171 ANISIPGCDKNMPGTIMAMGRLNRPGIMVYG 201 (613)
Q Consensus 171 g~V~l~gCDK~vPG~lMaaaRlniPsi~v~g 201 (613)
|+|+.+.-.....-.+-.+...++|.|++-.
T Consensus 62 giii~~~~~~~~~~~~~~~~~~~iPvV~~~~ 92 (309)
T 2fvy_A 62 ALAINLVDPAAAGTVIEKARGQNVPVVFFNK 92 (309)
T ss_dssp EEEECCSSGGGHHHHHHHHHTTTCCEEEESS
T ss_pred EEEEeCCCcchhHHHHHHHHHCCCcEEEecC
Confidence 9998754322233444455678999888753
No 57
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=30.99 E-value=42 Score=27.47 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=31.3
Q ss_pred eEEeeEEE-ecCHHHHHHHHh--CCCCCCCCeEEEEeCCCCCCC
Q 007192 457 YFSGPALV-FEGEESMIAAIS--EDPMSFKGKVVVIRGEGPKGG 497 (613)
Q Consensus 457 ~f~GpA~V-Fdseeda~~aI~--~g~I~~~GdVvVIRyeGPkGg 497 (613)
..+|=|-| |+++++|.+|+. +|..-. |..|.|++.=|++.
T Consensus 63 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~V~~a~~~~~ 105 (106)
T 1p27_B 63 YLKGYTLVEYETYKEAQAAMEGLNGQDLM-GQPISVDWCFVRGP 105 (106)
T ss_dssp SEEEEEEEEESCHHHHHHHHHHHTTCBSS-SSBCEEEESEESSC
T ss_pred ceeeEEEEEECCHHHHHHHHHHhcCCEEC-CcEEEEEeecCCCC
Confidence 45677854 999999999996 676555 88889998877754
No 58
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=30.55 E-value=3e+02 Score=25.63 Aligned_cols=92 Identities=8% Similarity=0.069 Sum_probs=54.3
Q ss_pred CCeEEEEecCCCcc-ccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccC
Q 007192 90 KPQVGISSVWYEGN-TCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQW 168 (613)
Q Consensus 90 kP~IgI~ns~~e~~-Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~ 168 (613)
...|||+.....-. .-|-.+.++.+.+++...+.|-.-..+. ++ . +.+.....++ .+..+.
T Consensus 8 ~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~----~~----~---------~~~~~~~~~~-~~~~~~ 69 (292)
T 3k4h_A 8 TKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMST----GE----T---------EEEIFNGVVK-MVQGRQ 69 (292)
T ss_dssp CCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEECC----CC----S---------HHHHHHHHHH-HHHTTC
T ss_pred CCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEEe----CC----C---------CHHHHHHHHH-HHHcCC
Confidence 46799987651100 2345678888889999888874322211 11 0 1222223333 345688
Q ss_pred CCcEEEccCCCCCchhhHHhhhccCCCeEEEcc
Q 007192 169 YDANISIPGCDKNMPGTIMAMGRLNRPGIMVYG 201 (613)
Q Consensus 169 ~Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~g 201 (613)
+||+|+++.... - -.+-.+...++|.|++-.
T Consensus 70 vdgiIi~~~~~~-~-~~~~~l~~~~iPvV~~~~ 100 (292)
T 3k4h_A 70 IGGIILLYSREN-D-RIIQYLHEQNFPFVLIGK 100 (292)
T ss_dssp CCEEEESCCBTT-C-HHHHHHHHTTCCEEEESC
T ss_pred CCEEEEeCCCCC-h-HHHHHHHHCCCCEEEECC
Confidence 999999765432 2 344445678999988754
No 59
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.39 E-value=53 Score=26.73 Aligned_cols=41 Identities=17% Similarity=0.126 Sum_probs=33.1
Q ss_pred eEEeeE-EEecCHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCC
Q 007192 457 YFSGPA-LVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGP 498 (613)
Q Consensus 457 ~f~GpA-~VFdseeda~~aI~~g~I~~~GdVvVIRyeGPkGgP 498 (613)
..+|=| +.|+++++|.+||.++..-. |-.|.+++.=|+..+
T Consensus 55 ~~~g~afV~f~~~~~a~~A~~~~~~~~-g~~l~v~~a~~~~~~ 96 (103)
T 2cqg_A 55 HSKGFGFVRFTEYETQVKVMSQRHMID-GRWCDCKLPNSKQSQ 96 (103)
T ss_dssp SEEEEEEEEESSHHHHHHHHHSCEEET-TEEEEEECCCTTCCC
T ss_pred CccceEEEEECCHHHHHHHHHcCCeeC-CeEEEEEecCCCCcC
Confidence 356777 45999999999999876555 889999999888544
No 60
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A {Staphylococcus aureus subsp} PDB: 3t07_A* 3t0t_A*
Probab=28.81 E-value=1.1e+02 Score=34.52 Aligned_cols=88 Identities=22% Similarity=0.200 Sum_probs=55.9
Q ss_pred CCceEEeeEEEecCHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCCcchHHHHHhCCCCCeeEEEcCC--CCCCC-
Q 007192 454 EGLYFSGPALVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDG--RFSGG- 530 (613)
Q Consensus 454 ~~~~f~GpA~VFdseeda~~aI~~g~I~~~GdVvVIRyeGPkGgPGMpEml~~t~al~g~Gl~~~VALITDG--RfSGa- 530 (613)
..-..+|+++|-++.+|++ .++.+ |+|||.+.--|. + +..| .+-.++||+- +-|=+
T Consensus 504 ~~G~v~G~v~vv~~~~da~-----~~~~~-g~ILVa~~l~Ps-------~---~~~l-----~~v~GiVte~Gg~tSHaA 562 (606)
T 3t05_A 504 GRGSVVGTTLVAETVKDLE-----GKDLS-DKVIVTNSIDET-------F---VPYV-----EKALGLITEENGITSPSA 562 (606)
T ss_dssp SSCEEEEEEEECSSGGGGS-----SSCCS-SEEEEESCCCTT-------T---HHHH-----TTSSEEEESSCCSSSHHH
T ss_pred ccceEEEEEEEECChHHHh-----hcCCC-CeEEEECCCCHH-------H---HHHH-----HhhEEEEecCCCcccHHH
Confidence 3445789999999988763 35678 999999988776 2 2223 1235677762 22211
Q ss_pred ----CCCcc-eEEecccccCCCCeEEeecCCEEEEecCCCEEE
Q 007192 531 ----SHGFV-VGHVCPEAQDGGPIGLIQNGDIINIDVQKRRID 568 (613)
Q Consensus 531 ----s~G~~-IGHVsPEAa~GGpIAlV~dGD~I~IDi~~r~L~ 568 (613)
+.|++ |--+ ++-...++|||.|+||-..+.+-
T Consensus 563 IlAR~lgIPaVvG~------~~a~~~l~~G~~V~vDg~~G~V~ 599 (606)
T 3t05_A 563 IVGLEKGIPTVVGV------EKAVKNISNNVLVTIDAAQGKIF 599 (606)
T ss_dssp HHHHHTTCCEEECC------TTHHHHSCSSCEEEEETTTTEEE
T ss_pred HHHhhCCCCEEEec------ccHHhhCCCCCEEEEECCCCEEE
Confidence 11322 2111 23345689999999999999874
No 61
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=28.81 E-value=1.9e+02 Score=27.88 Aligned_cols=88 Identities=14% Similarity=0.094 Sum_probs=51.3
Q ss_pred CCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCC
Q 007192 90 KPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWY 169 (613)
Q Consensus 90 kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~ 169 (613)
...||++... .|..+.++.+.+++...+.+|+-+.+. +. .. +.+.-...++.++ .+.+
T Consensus 6 ~~~Igvi~~~-----~~~~~~~~~~gi~~~a~~~~g~~l~i~-----~~--~~---------~~~~~~~~i~~l~-~~~v 63 (325)
T 2x7x_A 6 HFRIGVAQCS-----DDSWRHKMNDEILREAMFYNGVSVEIR-----SA--GD---------DNSKQAEDVHYFM-DEGV 63 (325)
T ss_dssp CCEEEEEESC-----CSHHHHHHHHHHHHHHTTSSSCEEEEE-----EC--TT---------CHHHHHHHHHHHH-HTTC
T ss_pred CeEEEEEecC-----CCHHHHHHHHHHHHHHHHcCCcEEEEe-----CC--CC---------CHHHHHHHHHHHH-HcCC
Confidence 4689998753 344566777777777777644433321 10 01 1233344566665 4679
Q ss_pred CcEEEccCCCCC-chhhHHhhhccCCCeEEEc
Q 007192 170 DANISIPGCDKN-MPGTIMAMGRLNRPGIMVY 200 (613)
Q Consensus 170 Dg~V~l~gCDK~-vPG~lMaaaRlniPsi~v~ 200 (613)
||+|+.+ ++.. ....+-.+...++|.|++-
T Consensus 64 dgiIi~~-~~~~~~~~~~~~~~~~~iPvV~~~ 94 (325)
T 2x7x_A 64 DLLIISA-NEAAPMTPIVEEAYQKGIPVILVD 94 (325)
T ss_dssp SEEEECC-SSHHHHHHHHHHHHHTTCCEEEES
T ss_pred CEEEEeC-CCHHHHHHHHHHHHHCCCeEEEeC
Confidence 9999875 4422 2233444456799988874
No 62
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=28.01 E-value=2e+02 Score=27.89 Aligned_cols=88 Identities=14% Similarity=0.155 Sum_probs=55.6
Q ss_pred CeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHH-cccCC
Q 007192 91 PQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVM-SAQWY 169 (613)
Q Consensus 91 P~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~-~a~~~ 169 (613)
-.|||.++|. .++.+..++-+.++|=....+.-..+.|.... .-.+++.+.+.++..+ .....
T Consensus 118 ~rvglltpy~---------~~~~~~~~~~l~~~Giev~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~a 181 (240)
T 3ixl_A 118 RRVALATAYI---------DDVNERLAAFLAEESLVPTGCRSLGITGVEAM-------ARVDTATLVDLCVRAFEAAPDS 181 (240)
T ss_dssp SEEEEEESSC---------HHHHHHHHHHHHHTTCEEEEEEECCCCCHHHH-------HTCCHHHHHHHHHHHHHTSTTC
T ss_pred CEEEEEeCCh---------HHHHHHHHHHHHHCCCEEeccccCCCCCcchh-------hcCCHHHHHHHHHHHhhcCCCC
Confidence 3699999875 56788888888887643333333333333332 2356888888888844 77789
Q ss_pred CcEEEccCCCCCchhhHHhh--hccCCCe
Q 007192 170 DANISIPGCDKNMPGTIMAM--GRLNRPG 196 (613)
Q Consensus 170 Dg~V~l~gCDK~vPG~lMaa--aRlniPs 196 (613)
|++|+ ||-..-.--+... .++++|.
T Consensus 182 daivL--~CT~l~~l~~i~~le~~lg~PV 208 (240)
T 3ixl_A 182 DGILL--SSGGLLTLDAIPEVERRLGVPV 208 (240)
T ss_dssp SEEEE--ECTTSCCTTHHHHHHHHHSSCE
T ss_pred CEEEE--eCCCCchhhhHHHHHHHhCCCE
Confidence 99888 6965543333342 3567775
No 63
>4g1h_A Sortase family protein; cysteine protease, extracellular, transferase; 1.80A {Streptococcus agalactiae serogroup V}
Probab=27.84 E-value=23 Score=34.68 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=31.7
Q ss_pred ceEEec-ccccCCCCeEEeecCCEEEEecCCCEEEEecC
Q 007192 535 VVGHVC-PEAQDGGPIGLIQNGDIINIDVQKRRIDVQLT 572 (613)
Q Consensus 535 ~IGHVs-PEAa~GGpIAlV~dGD~I~IDi~~r~L~l~v~ 572 (613)
..||.. +-+..-..|..++.||.|.|....+.+.-.|+
T Consensus 112 IaGHr~~~~~~~F~~L~~lk~GD~I~v~~~~~~~~Y~V~ 150 (215)
T 4g1h_A 112 LTAHRGLPTARLFTDLNKVKKGQIFYVTNIKETLAYKVV 150 (215)
T ss_dssp EECCSCCSSCCTTTTGGGCCTTCEEEEECSSCEEEEEEE
T ss_pred EEEecCCCCCchhccHhhCCCCCEEEEEECCEEEEEEEe
Confidence 349987 77777888999999999999999998776654
No 64
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=27.11 E-value=52 Score=30.22 Aligned_cols=71 Identities=15% Similarity=0.089 Sum_probs=47.4
Q ss_pred CCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCC
Q 007192 90 KPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWY 169 (613)
Q Consensus 90 kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~ 169 (613)
+|.|+|+++-+|+.++.. .+.=...+++-+++.|..+....+ +.| .++.|...++..++...+
T Consensus 1 ~~~v~Ii~tGdEl~~G~i-~D~n~~~l~~~l~~~G~~v~~~~i--v~D--------------d~~~i~~~l~~~~~~~~~ 63 (164)
T 2is8_A 1 MFRVGILTVSDKGFRGER-QDTTHLAIREVLAGGPFEVAAYEL--VPD--------------EPPMIKKVLRLWADREGL 63 (164)
T ss_dssp CEEEEEEEECHHHHHTSS-CCCHHHHHHHHHTTSSEEEEEEEE--ECS--------------CHHHHHHHHHHHHHTSCC
T ss_pred CcEEEEEEEcCcccCCCc-ccchHHHHHHHHHHCCCeEeEEEE--cCC--------------CHHHHHHHHHHHHhcCCC
Confidence 378999999999877744 233444566667778866554433 334 378888888888765467
Q ss_pred CcEEEccC
Q 007192 170 DANISIPG 177 (613)
Q Consensus 170 Dg~V~l~g 177 (613)
|-+|.-+|
T Consensus 64 DlVittGG 71 (164)
T 2is8_A 64 DLILTNGG 71 (164)
T ss_dssp SEEEEESC
T ss_pred CEEEEcCC
Confidence 86655544
No 65
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.82 E-value=51 Score=27.37 Aligned_cols=40 Identities=20% Similarity=0.268 Sum_probs=29.9
Q ss_pred eEEeeEE-EecCHHHHHHHHh--CCC-CC-------CCCeEEEEeCCCCCCC
Q 007192 457 YFSGPAL-VFEGEESMIAAIS--EDP-MS-------FKGKVVVIRGEGPKGG 497 (613)
Q Consensus 457 ~f~GpA~-VFdseeda~~aI~--~g~-I~-------~~GdVvVIRyeGPkGg 497 (613)
..+|=|- .|+++++|.+|+. +|. +. . +.-+.++|..|++|
T Consensus 64 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~-~~~l~v~~a~p~~G 114 (114)
T 1x5o_A 64 TSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP-TEPLLCKFSGPSSG 114 (114)
T ss_dssp CEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC-SSCBEEEECCCSCC
T ss_pred CcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC-CCceeEEccCCCCC
Confidence 3567774 4999999999985 453 32 4 66799999999864
No 66
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.81 E-value=48 Score=26.89 Aligned_cols=40 Identities=33% Similarity=0.297 Sum_probs=31.2
Q ss_pred eEEeeEE-EecCHHHHHHHHh--CCCCCCCCeEEEEeCCCCCCC
Q 007192 457 YFSGPAL-VFEGEESMIAAIS--EDPMSFKGKVVVIRGEGPKGG 497 (613)
Q Consensus 457 ~f~GpA~-VFdseeda~~aI~--~g~I~~~GdVvVIRyeGPkGg 497 (613)
..+|=|- .|+++++|.+||. ++..-. |..|.|+|.=|+..
T Consensus 52 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~V~~a~~~~~ 94 (102)
T 2fc8_A 52 SSKGFGFVDFNSEEDAKAAKEAMEDGEID-GNKVTLDWAKPKGE 94 (102)
T ss_dssp SEEEEEEEECSSHHHHHHHHHHHTTCEET-TEECEEEECCCCCS
T ss_pred CcCcEEEEEECCHHHHHHHHHHhCCCeEC-CeEEEEEEecCCCC
Confidence 3567774 4999999999996 676555 88999998877744
No 67
>3g66_A Sortase C; pilus, transferase; HET: MES; 1.70A {Streptococcus pneumoniae} PDB: 3g69_A*
Probab=26.36 E-value=22 Score=34.78 Aligned_cols=37 Identities=22% Similarity=0.330 Sum_probs=31.8
Q ss_pred eEEec-ccccCCCCeEEeecCCEEEEecCCCEEEEecC
Q 007192 536 VGHVC-PEAQDGGPIGLIQNGDIINIDVQKRRIDVQLT 572 (613)
Q Consensus 536 IGHVs-PEAa~GGpIAlV~dGD~I~IDi~~r~L~l~v~ 572 (613)
.||.. +-+..-..|..++.||.|.|....+.+.-.|+
T Consensus 112 aGHr~~~~~~~F~~L~~lk~GD~I~v~~~~~~~~Y~V~ 149 (212)
T 3g66_A 112 TAHRGLPTAELFSQLDKMKKGDIFYLHVLDQVLAYQVD 149 (212)
T ss_dssp ECCSCBTTBCTTTTGGGCCTTCEEEEEETTEEEEEEEE
T ss_pred EeecCCCCCcccccHhhCCcCCEEEEEECCeEEEEEEe
Confidence 49998 77778889999999999999999998877654
No 68
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=26.31 E-value=55 Score=33.90 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=36.1
Q ss_pred HHHHHHHHcccCCCcEEEccCCCCCchhhHHhhhccCCCeEEEccCC
Q 007192 157 ADSIETVMSAQWYDANISIPGCDKNMPGTIMAMGRLNRPGIMVYGGT 203 (613)
Q Consensus 157 AdsiE~~~~a~~~Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~gGp 203 (613)
-..++..++...+|.+++.+.-.-+.+ .++|.+.+||.+.+.+|-
T Consensus 83 ~~~l~~~l~~~kPD~Vlv~gd~~~~~a--alaA~~~~IPv~h~eagl 127 (385)
T 4hwg_A 83 IEKVDEVLEKEKPDAVLFYGDTNSCLS--AIAAKRRKIPIFHMEAGN 127 (385)
T ss_dssp HHHHHHHHHHHCCSEEEEESCSGGGGG--HHHHHHTTCCEEEESCCC
T ss_pred HHHHHHHHHhcCCcEEEEECCchHHHH--HHHHHHhCCCEEEEeCCC
Confidence 345677888999999999887665555 678889999998888775
No 69
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=26.24 E-value=4.4e+02 Score=25.39 Aligned_cols=87 Identities=11% Similarity=0.075 Sum_probs=53.0
Q ss_pred CCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCC
Q 007192 90 KPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWY 169 (613)
Q Consensus 90 kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~ 169 (613)
...||++.... .|..+.++.+.+++...+.|-.-+.+++ + . +.+--...++.+. .+.+
T Consensus 63 ~~~Ig~i~~~~----~~~~~~~~~~gi~~~~~~~g~~~~~~~~----~----~---------~~~~~~~~~~~l~-~~~v 120 (332)
T 2o20_A 63 TTTVGVILPTI----TSTYFAAITRGVDDIASMYKYNMILANS----D----N---------DVEKEEKVLETFL-SKQV 120 (332)
T ss_dssp CCEEEEEESCT----TCHHHHHHHHHHHHHHHHTTCEEEEEEC----T----T---------CHHHHHHHHHHHH-HTTC
T ss_pred CCEEEEEeCCC----CCcHHHHHHHHHHHHHHHcCCEEEEEEC----C----C---------ChHHHHHHHHHHH-hCCC
Confidence 46899987532 3556788888888888888743322211 1 1 1222334455554 5789
Q ss_pred CcEEEccCCCCCchhhHHhhhccCCCeEEEc
Q 007192 170 DANISIPGCDKNMPGTIMAMGRLNRPGIMVY 200 (613)
Q Consensus 170 Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~ 200 (613)
||+|+.+. +.. +..+-.+...++|.|++-
T Consensus 121 dgiI~~~~-~~~-~~~~~~l~~~~iPvV~~~ 149 (332)
T 2o20_A 121 DGIVYMGS-SLD-EKIRTSLKNSRTPVVLVG 149 (332)
T ss_dssp SEEEECSS-CCC-HHHHHHHHHHCCCEEEES
T ss_pred CEEEEeCC-CCC-HHHHHHHHhCCCCEEEEc
Confidence 99999874 222 334444456799988874
No 70
>2w1j_A Putative sortase, sortase C-1; pathogenicity, transferase; 1.24A {Streptococcus pneumoniae} PDB: 2wts_A 3re9_A
Probab=25.85 E-value=39 Score=32.88 Aligned_cols=44 Identities=20% Similarity=0.279 Sum_probs=33.8
Q ss_pred CCCCC-c-ceEEec-ccccCCCCeEEeecCCEEEEecCCCEEEEecC
Q 007192 529 GGSHG-F-VVGHVC-PEAQDGGPIGLIQNGDIINIDVQKRRIDVQLT 572 (613)
Q Consensus 529 Gas~G-~-~IGHVs-PEAa~GGpIAlV~dGD~I~IDi~~r~L~l~v~ 572 (613)
|+..| + +.||.. +-+..-..|..++.||.|.|...++...-.|.
T Consensus 104 gG~~~n~VIaGH~~~~~~~~F~~L~~l~~GD~i~v~~~~~~~~Y~V~ 150 (212)
T 2w1j_A 104 GGNSTHAVITAHTGLPTAKMFTDLTKLKVGDKFYVHNIKEVMAYQVD 150 (212)
T ss_dssp CCTTEEEEEECCSSCSSCCTTGGGGGCCTTCEEEEECSSCEEEEEEE
T ss_pred cCCCCeEEEEEecCCCCCccccCHhhCccCCEEEEEECCEEEEEEEE
Confidence 34455 2 349996 76667778899999999999999888877654
No 71
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=25.51 E-value=2.9e+02 Score=25.98 Aligned_cols=89 Identities=11% Similarity=-0.100 Sum_probs=52.7
Q ss_pred CCeEEEEecCCC-ccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccC
Q 007192 90 KPQVGISSVWYE-GNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQW 168 (613)
Q Consensus 90 kP~IgI~ns~~e-~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~ 168 (613)
...|||+-...+ .+ -.+.++.+.+++...+.|-.-..+++- +.- + ..++ +..++..+.
T Consensus 8 s~~Igvv~~~~~~~~---~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~----~------~~~~-----~~~~l~~~~ 66 (288)
T 3gv0_A 8 TNVIALVLSVDEELM---GFTSQMVFGITEVLSTTQYHLVVTPHI---HAK----D------SMVP-----IRYILETGS 66 (288)
T ss_dssp CCEEEEECBCCCCSS---CHHHHHHHHHHHHHTTSSCEEEECCBS---SGG----G------TTHH-----HHHHHHHTC
T ss_pred CCEEEEEecCCcccc---HHHHHHHHHHHHHHHHcCCEEEEecCC---cch----h------HHHH-----HHHHHHcCC
Confidence 467898866433 22 357888888888888877433322211 100 0 0122 333456789
Q ss_pred CCcEEEccCCCCCchhhHHhhhccCCCeEEEcc
Q 007192 169 YDANISIPGCDKNMPGTIMAMGRLNRPGIMVYG 201 (613)
Q Consensus 169 ~Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~g 201 (613)
+||+|+++.. ..- -.+-.+...++|.|++-.
T Consensus 67 vdgiIi~~~~-~~~-~~~~~l~~~~iPvV~i~~ 97 (288)
T 3gv0_A 67 ADGVIISKIE-PND-PRVRFMTERNMPFVTHGR 97 (288)
T ss_dssp CSEEEEESCC-TTC-HHHHHHHHTTCCEEEESC
T ss_pred ccEEEEecCC-CCc-HHHHHHhhCCCCEEEECC
Confidence 9999988643 222 344455678999988754
No 72
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=25.41 E-value=21 Score=31.47 Aligned_cols=36 Identities=36% Similarity=0.421 Sum_probs=23.6
Q ss_pred ceEEecccccCCCCeEEeecCCEEEEecCCCEEEEecCHHHHHHHH
Q 007192 535 VVGHVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLTDEEMEERR 580 (613)
Q Consensus 535 ~IGHVsPEAa~GGpIAlV~dGD~I~IDi~~r~L~l~v~~eeL~~R~ 580 (613)
+||.|-|||-.---=--=|+||+|++ =|||||++=.
T Consensus 45 ~I~~vmP~aT~TAFeYEDE~gDRITV----------RSDeE~kAMl 80 (106)
T 2npt_A 45 VIGQVLPEATTTAFEYEDEDGDRITV----------RSDEEMKAML 80 (106)
T ss_dssp HHHHHSTTSCCSEEEEECTTSCEEEE----------CSHHHHHHHH
T ss_pred HHHHhCccceeeeeeeccccCCeeEE----------cchHHHHHHH
Confidence 46888899865422233467888775 3689987643
No 73
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=24.62 E-value=4.1e+02 Score=24.64 Aligned_cols=88 Identities=9% Similarity=0.063 Sum_probs=51.6
Q ss_pred CCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCC
Q 007192 90 KPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWY 169 (613)
Q Consensus 90 kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~ 169 (613)
...||++.... .|..+.++.+.+++...+.|-. +-+ ++. .. +.+-..+.++.++ .+.+
T Consensus 7 ~~~Ig~i~~~~----~~~~~~~~~~gi~~~~~~~g~~---~~~---~~~--~~---------~~~~~~~~~~~l~-~~~v 64 (289)
T 1dbq_A 7 TKSIGLLATSS----EAAYFAEIIEAVEKNCFQKGYT---LIL---GNA--WN---------NLEKQRAYLSMMA-QKRV 64 (289)
T ss_dssp -CEEEEEESCT----TSHHHHHHHHHHHHHHHHHTCE---EEE---EEC--TT---------CHHHHHHHHHHHH-HTTC
T ss_pred CCEEEEEeCCC----CChHHHHHHHHHHHHHHHcCCe---EEE---EcC--CC---------ChHHHHHHHHHHH-hCCC
Confidence 45799987542 3556778888888888887732 221 111 01 2333444566665 5779
Q ss_pred CcEEEccCCCCCchhhHHhhhc-cCCCeEEEcc
Q 007192 170 DANISIPGCDKNMPGTIMAMGR-LNRPGIMVYG 201 (613)
Q Consensus 170 Dg~V~l~gCDK~vPG~lMaaaR-lniPsi~v~g 201 (613)
||+|+.+.-. . +..+-.+.+ .++|.|++-.
T Consensus 65 dgii~~~~~~-~-~~~~~~l~~~~~iPvV~~~~ 95 (289)
T 1dbq_A 65 DGLLVMCSEY-P-EPLLAMLEEYRHIPMVVMDW 95 (289)
T ss_dssp SEEEEECSCC-C-HHHHHHHHHTTTSCEEEEEC
T ss_pred CEEEEEeccC-C-HHHHHHHHhccCCCEEEEcc
Confidence 9999876432 1 222222334 6899888754
No 74
>4pga_A Glutaminase-asparaginase; bacterial amidohydrolase; 1.70A {Pseudomonas SP} SCOP: c.88.1.1 PDB: 1djp_A* 1djo_A* 3pga_1
Probab=24.52 E-value=1.7e+02 Score=30.35 Aligned_cols=111 Identities=12% Similarity=0.138 Sum_probs=66.7
Q ss_pred CcCCCCeEEEEecCCCc-------------cccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccc
Q 007192 86 ADMSKPQVGISSVWYEG-------------NTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQS 152 (613)
Q Consensus 86 ed~~kP~IgI~ns~~e~-------------~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~s 152 (613)
.++.+|.|.|..|-..+ .+.....++|.+.+-+ +... ..++...+.--|.-.| ..-.
T Consensus 5 ~~~~~~~I~ii~TGGTIa~~~~~~~~~~gy~~~~~~~~~ll~~vp~-l~~~--~~i~~~~~~~idS~~m-------t~~~ 74 (337)
T 4pga_A 5 NQQKLANVVILATGGTIAGAGASAANSATYQAAKVGVDKLIAGVPE-LADL--ANVRGEQVMQIASESI-------TNDD 74 (337)
T ss_dssp ---CCCEEEEEEEESGGGCEESSTTCSSSEESSCSCHHHHHHTCTT-HHHH--CEEEEEEEEEECGGGC-------CHHH
T ss_pred cCCCCCeEEEEECCChhcccccCCCCcccccCCCccHHHHHHhCcc-cccc--ceEEEEEeccCCCCcC-------CHHH
Confidence 34678999998875221 2444667777776542 2221 1234333333333333 3446
Q ss_pred hHHHHHHHHHHHcccCCCcEEEccCCCCCch-hhHHh-hhccCCCeEEEccCCCCCcc
Q 007192 153 RDLIADSIETVMSAQWYDANISIPGCDKNMP-GTIMA-MGRLNRPGIMVYGGTIKPGH 208 (613)
Q Consensus 153 RelIAdsiE~~~~a~~~Dg~V~l~gCDK~vP-G~lMa-aaRlniPsi~v~gGpm~~G~ 208 (613)
+..||..|+..++-..+||+|.+.|=|-.-= +.+.. +..++.|.|| -|.|.|-.
T Consensus 75 w~~la~~i~~~l~~~~~dGvVItHGTDTm~~TA~~L~~~l~~~kPVVl--TGa~rp~~ 130 (337)
T 4pga_A 75 LLKLGKRVAELADSNDVDGIVITHGTDTLEETAYFLNLVQKTDKPIVV--VGSMRPGT 130 (337)
T ss_dssp HHHHHHHHHHHHHCTTCSEEEEECCSTTHHHHHHHHHHHCCCCSCEEE--ECCSSCTT
T ss_pred HHHHHHHHHHHhhccCCCeEEEECCCccHHHHHHHHHHHcCCCCCEEE--eCCCCCCC
Confidence 7789999999888788999999999997521 22222 2356678654 48999864
No 75
>2xz9_A Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria); thermophilic, PEP-utilising enzyme, transferase; 1.68A {Thermoanaerobacter tengcongensis} PDB: 2bg5_A 2xz7_A*
Probab=24.50 E-value=1e+02 Score=31.81 Aligned_cols=58 Identities=19% Similarity=0.273 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHcCCceeEEeccccCc-------------ccccCccCceecccchHHHHHHHHHHHccc
Q 007192 110 LRLSEAVKRGVEEAGMVGFRFNTIGVSD-------------AISMGTKGMCFSLQSRDLIADSIETVMSAQ 167 (613)
Q Consensus 110 ~~la~~Vk~gI~~aGG~p~ef~tiav~D-------------gia~g~~GM~ysL~sRelIAdsiE~~~~a~ 167 (613)
++..+.+++.+...+|.|..+.|..+.- .=..|+.|.|++|-..++..+.+..++++.
T Consensus 62 ~~q~~~~~~~~~~~~~~~v~VR~~d~g~dk~~~~~~~~~E~nP~LG~RgiR~~l~~p~~~~~ql~Ai~ra~ 132 (324)
T 2xz9_A 62 EEQFEAYKEVVEKMGGRPVTIRTLDIGGDKELPYLDMPKEMNPFLGYRAIRLCLDRPDIFKTQLRAILRAS 132 (324)
T ss_dssp HHHHHHHHHHHHHTTTSCEEEECCCCBGGGCCTTTCCCCCSCGGGSSBTHHHHHHCHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHhCCCceEEEeCCCCcchhhhhhccccccCcccccceeeeeccchhhHHHHHHHHHHHH
Confidence 4566677777777899999999988632 456799999999999999999999998873
No 76
>1t2w_A Sortase; transpeptidase, beta barrel, hydrolase; 1.80A {Staphylococcus aureus} SCOP: b.100.1.1 PDB: 1t2o_A 1ija_A 2kid_A* 1t2p_A
Probab=24.20 E-value=55 Score=29.47 Aligned_cols=52 Identities=12% Similarity=0.163 Sum_probs=37.9
Q ss_pred eEEEcCCCCCCCCCCcc--eEEe--cccccCCCCeEEeecCCEEEEecCCCEEEEecC
Q 007192 519 VALLTDGRFSGGSHGFV--VGHV--CPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLT 572 (613)
Q Consensus 519 VALITDGRfSGas~G~~--IGHV--sPEAa~GGpIAlV~dGD~I~IDi~~r~L~l~v~ 572 (613)
++-...+-+-| .|-+ .||. .+-...=..|..++.||.|.|...++...-.|+
T Consensus 40 ~g~~~~t~~pG--~gn~viaGH~~~~~~~~~F~~L~~l~~Gd~i~v~~~~~~~~Y~V~ 95 (145)
T 1t2w_A 40 VSFAEENESLD--DQNISIAGHTFIDRPNYQFTNLKAAKKGSMVYFKVGNETRKYKMT 95 (145)
T ss_dssp EEESSTTCCTT--SSEEEEEEECCTTSTTSTTTTGGGCCTTCEEEEEETTEEEEEEEE
T ss_pred cEEecCCCCCC--CceEEEEEecCCCCCCcccCChhhCCCCCEEEEEECCEEEEEEEE
Confidence 44455556666 2433 3999 455666788999999999999998888777664
No 77
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.17 E-value=78 Score=25.16 Aligned_cols=40 Identities=13% Similarity=0.076 Sum_probs=30.5
Q ss_pred EEeeE-EEecCHHHHHHHHh--CCCCCCCCeEEEEeCCCCCCCC
Q 007192 458 FSGPA-LVFEGEESMIAAIS--EDPMSFKGKVVVIRGEGPKGGP 498 (613)
Q Consensus 458 f~GpA-~VFdseeda~~aI~--~g~I~~~GdVvVIRyeGPkGgP 498 (613)
.+|=| +.|+++++|.+|+. +|..-. |-.|.|++.=|+..+
T Consensus 46 ~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~V~~a~~~~~~ 88 (95)
T 2dnz_A 46 SKGYGFITFSDSECARRALEQLNGFELA-GRPMRVGHVTERLDG 88 (95)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHTTCCSS-SSCCEEEESSCCCCC
T ss_pred eeeEEEEEECCHHHHHHHHHHhCCCeeC-CcEEEEEEcccccCC
Confidence 44666 55999999999996 676556 888888888777543
No 78
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=23.88 E-value=1.1e+02 Score=28.64 Aligned_cols=86 Identities=17% Similarity=0.085 Sum_probs=60.1
Q ss_pred CeEEEE-ecCCCccccccchHHHHHHHHHHHHHcCCce---eEEeccccCcccccCccCceecccchHHHHHHHHHHHcc
Q 007192 91 PQVGIS-SVWYEGNTCNMHLLRLSEAVKRGVEEAGMVG---FRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSA 166 (613)
Q Consensus 91 P~IgI~-ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p---~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a 166 (613)
..|||+ +.||+. --+.|-+-.++.+...|... -.+.+|+.= -|| +. +..+.+.
T Consensus 13 ~ri~IV~arfn~~-----I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGaf------------EiP---~a---a~~la~~ 69 (154)
T 1hqk_A 13 LRFGIVASRFNHA-----LVDRLVEGAIDCIVRHGGREEDITLVRVPGSW------------EIP---VA---AGELARK 69 (154)
T ss_dssp CCEEEEEECTTHH-----HHHHHHHHHHHHHHHTTCCGGGEEEEEESSGG------------GHH---HH---HHHHHTC
T ss_pred CEEEEEEeeCcHH-----HHHHHHHHHHHHHHHcCCCccceEEEECCcHH------------HHH---HH---HHHHHhc
Confidence 447776 557765 35677788888888888654 355666543 344 22 2444567
Q ss_pred cCCCcEEEccC------------CCCCchhhHHhhhccCCCeEEE
Q 007192 167 QWYDANISIPG------------CDKNMPGTIMAMGRLNRPGIMV 199 (613)
Q Consensus 167 ~~~Dg~V~l~g------------CDK~vPG~lMaaaRlniPsi~v 199 (613)
..|||+|+|+- |+-..-|.+...+..|+|.+|.
T Consensus 70 ~~yDavIalG~VIrG~T~Hfd~Va~~vs~gl~~v~l~~~vPV~~G 114 (154)
T 1hqk_A 70 EDIDAVIAIGVLIRGATPHFDYIASEVSKGLANLSLELRKPITFG 114 (154)
T ss_dssp TTCCEEEEEEEEECCSSTHHHHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred CCCCEEEEeeeeecCCchHHHHHHHHHHHHHHHHHhhcCCCEEEE
Confidence 88999999973 5666778888888899999985
No 79
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=23.80 E-value=3.8e+02 Score=24.74 Aligned_cols=86 Identities=12% Similarity=-0.002 Sum_probs=52.7
Q ss_pred CCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCC
Q 007192 90 KPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWY 169 (613)
Q Consensus 90 kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~ 169 (613)
...||++.... -|..+.++.+.+++...+.|-.-..+++-. +.+--...++.+ ..+.+
T Consensus 8 ~~~Ig~i~~~~----~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~-----------------~~~~~~~~~~~l-~~~~~ 65 (277)
T 3e61_A 8 SKLIGLLLPDM----SNPFFTLIARGVEDVALAHGYQVLIGNSDN-----------------DIKKAQGYLATF-VSHNC 65 (277)
T ss_dssp --CEEEEESCT----TSHHHHHHHHHHHHHHHHTTCCEEEEECTT-----------------CHHHHHHHHHHH-HHTTC
T ss_pred CCEEEEEECCC----CCHHHHHHHHHHHHHHHHCCCEEEEEeCCC-----------------CHHHHHHHHHHH-HhCCC
Confidence 45789887542 245678888999999988875444332210 122223334444 45789
Q ss_pred CcEEEccCCCCCchhhHH-hhhccCCCeEEEcc
Q 007192 170 DANISIPGCDKNMPGTIM-AMGRLNRPGIMVYG 201 (613)
Q Consensus 170 Dg~V~l~gCDK~vPG~lM-aaaRlniPsi~v~g 201 (613)
||+|+.+. .+-.+- .+...++|.|++-.
T Consensus 66 dgiIi~~~----~~~~~~~~l~~~~iPvV~~~~ 94 (277)
T 3e61_A 66 TGMISTAF----NENIIENTLTDHHIPFVFIDR 94 (277)
T ss_dssp SEEEECGG----GHHHHHHHHHHC-CCEEEGGG
T ss_pred CEEEEecC----ChHHHHHHHHcCCCCEEEEec
Confidence 99999882 244555 66678999888753
No 80
>3o0p_A Sortase family protein; PILI assembly, PILI subunits, transferase ,hydrolas transferase, hydrolase; 1.30A {Streptococcus agalactiae}
Probab=23.25 E-value=38 Score=33.27 Aligned_cols=54 Identities=20% Similarity=0.296 Sum_probs=39.4
Q ss_pred eEEEcCCCCC-CCCCC-c-ceEEec-ccccCCCCeEEeecCCEEEEecCCCEEEEecC
Q 007192 519 VALLTDGRFS-GGSHG-F-VVGHVC-PEAQDGGPIGLIQNGDIINIDVQKRRIDVQLT 572 (613)
Q Consensus 519 VALITDGRfS-Gas~G-~-~IGHVs-PEAa~GGpIAlV~dGD~I~IDi~~r~L~l~v~ 572 (613)
++-..++-|. |+..| + ..||.. +-+..-.+|..++.||.|.|....+.+.-.|+
T Consensus 97 ~G~~~gt~~P~gG~~gn~VIaGHr~~~~~~~F~~L~~Lk~GD~I~v~~~~~~~~Y~V~ 154 (216)
T 3o0p_A 97 AGHLEGTSLPIGGNSTHTVITAHSGIPDKELFSNLKKLKKGDKFYIQNIKETIAYQVD 154 (216)
T ss_dssp EEECTTSCCSSCCTTEEEEEECCSCCTTCCTTTTGGGCCTTCEEEEECSSCEEEEEEE
T ss_pred CeEecCCcCCCCCCCceEEEEeecCCCCCcccccHhhCCcCCEEEEEECCEEEEEEEe
Confidence 3344455553 34445 3 349987 77777889999999999999999998877664
No 81
>3o3m_B Beta subunit 2-hydroxyacyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_B* 3o3o_B
Probab=23.18 E-value=2.8e+02 Score=28.74 Aligned_cols=130 Identities=12% Similarity=0.040 Sum_probs=72.1
Q ss_pred CCCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHccc-
Q 007192 89 SKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQ- 167 (613)
Q Consensus 89 ~kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~- 167 (613)
.|++||...+|.= .+=|.++|.+|+-.. +.++.+..+..++--.+-| +|=.+++..+.+.
T Consensus 27 G~kvVG~~c~~~P---------------~Eii~AaG~~pv~l~--g~~~~i~~Ae~~lp~~~Cs--~~k~~~g~~l~g~~ 87 (385)
T 3o3m_B 27 GKKAIGCFPVYCP---------------EEIIHAAGMLPVGIW--GGQTELDLAKQYFPAFACS--IMQSCLEYGLKGAY 87 (385)
T ss_dssp CCCEEEECSSCCC---------------HHHHHHTTCEEEECC--CCSCCCSGGGGTCCTTSCH--HHHHHHHHHHHTTT
T ss_pred CCeEEEEEcCcCC---------------HHHHhcCCCeEEEEe--CCCcchhhhhccCcccCcH--HHHHHHHHHHcCCC
Confidence 4788998877642 144789999998753 3333555554443212221 3445566666654
Q ss_pred -CCCcEEEccCCCCCchhh--HHhhhccCCCeEEEccCCCCCcccCCcccc-----eehHHHHHHHHhcCCCCHHHHHHH
Q 007192 168 -WYDANISIPGCDKNMPGT--IMAMGRLNRPGIMVYGGTIKPGHFQGHTYD-----IVSAFQVYGEYVSGSISDEQRMNV 239 (613)
Q Consensus 168 -~~Dg~V~l~gCDK~vPG~--lMaaaRlniPsi~v~gGpm~~G~~~g~~~~-----~~~~~e~~g~~~~G~i~~eel~~~ 239 (613)
.+|++|+=..||-.. -| .+....-++|.+++.= | ........++ +..+.+.+-++.--++|+|.|.+.
T Consensus 88 p~~d~vv~~~~CD~~~-k~~e~~~~~~~~~p~~~~~~-P--~~~~~~~~~~y~~~el~~l~~~LE~~tG~~i~~e~L~ea 163 (385)
T 3o3m_B 88 DELSGVIIPGMCDTLI-CLGQNWKSAVPHIKYISLVH-P--QNRKLEAGVKYLISEYKGVKRELEEICGYEIEEAKIHES 163 (385)
T ss_dssp TTCSCEEEECCSHHHH-HHHHHHHHHSTTSCEEEECC-C--SSTTSHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHH
T ss_pred CCcCEEEcCCCchhHH-HHHHHHHHhCCCCCEEEEeC-C--CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 489999999999222 12 1222223799888752 2 1111100111 123444444556668999888765
Q ss_pred HH
Q 007192 240 VL 241 (613)
Q Consensus 240 E~ 241 (613)
-.
T Consensus 164 i~ 165 (385)
T 3o3m_B 164 IE 165 (385)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 82
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=23.06 E-value=1.1e+02 Score=28.52 Aligned_cols=86 Identities=16% Similarity=0.188 Sum_probs=59.9
Q ss_pred CeEEEE-ecCCCccccccchHHHHHHHHHHHHHcCCce---eEEeccccCcccccCccCceecccchHHHHHHHHHHHcc
Q 007192 91 PQVGIS-SVWYEGNTCNMHLLRLSEAVKRGVEEAGMVG---FRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSA 166 (613)
Q Consensus 91 P~IgI~-ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p---~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a 166 (613)
..|||+ +.||+. --+.|-+-.++.+.+.|... -.+.+|+.= -|| +. +..+.+.
T Consensus 13 ~ri~IV~arfn~~-----I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGaf------------EiP---~a---a~~la~~ 69 (154)
T 1rvv_A 13 LKIGIVVGRFNDF-----ITSKLLSGAEDALLRHGVDTNDIDVAWVPGAF------------EIP---FA---AKKMAET 69 (154)
T ss_dssp CCEEEEEESTTHH-----HHHHHHHHHHHHHHHTTCCGGGEEEEEESSGG------------GHH---HH---HHHHHHT
T ss_pred CEEEEEEEeCcHH-----HHHHHHHHHHHHHHHcCCCccceEEEECCcHH------------HHH---HH---HHHHHhc
Confidence 447776 557765 35677788888888899654 355666543 344 22 2344566
Q ss_pred cCCCcEEEccC------------CCCCchhhHHhhhccCCCeEEE
Q 007192 167 QWYDANISIPG------------CDKNMPGTIMAMGRLNRPGIMV 199 (613)
Q Consensus 167 ~~~Dg~V~l~g------------CDK~vPG~lMaaaRlniPsi~v 199 (613)
..|||+|+|+- |+-..-|.+...+..|+|.+|.
T Consensus 70 ~~yDavIaLG~VIrG~T~Hfd~V~~~vs~Gl~~v~l~~~vPV~~G 114 (154)
T 1rvv_A 70 KKYDAIITLGTVIRGATTHYDYVCNEAAKGIAQAANTTGVPVIFG 114 (154)
T ss_dssp SCCSEEEEEEEEECCSSSHHHHHHHHHHHHHHHHHHHHCSCEEEE
T ss_pred CCCCEEEEeeeeecCCchHHHHHHHHHHHHHHHHHhhhCCCEEEE
Confidence 88999999973 5666778888888899999985
No 83
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=23.05 E-value=57 Score=29.62 Aligned_cols=32 Identities=16% Similarity=0.338 Sum_probs=26.5
Q ss_pred eEEEecCHHHHHHHHhCCCCCCCCeEEEEeCCCC
Q 007192 461 PALVFEGEESMIAAISEDPMSFKGKVVVIRGEGP 494 (613)
Q Consensus 461 pA~VFdseeda~~aI~~g~I~~~GdVvVIRyeGP 494 (613)
++.+|++-++|++.+.+ ..++ ||+|++..-|-
T Consensus 118 ~~~~~~d~~eai~~~~~-~~~~-gDvVLv~Gsg~ 149 (163)
T 3mvn_A 118 PAISADDVDELVMRIVQ-QAKP-NDHILIMSNGA 149 (163)
T ss_dssp CEEEESSHHHHHHHHHH-HCCT-TCEEEEECSSC
T ss_pred CeEEECCHHHHHHHHHH-hCCC-CCEEEEECCCC
Confidence 68899999999988765 4688 99999987654
No 84
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=22.56 E-value=1.7e+02 Score=28.07 Aligned_cols=87 Identities=14% Similarity=0.190 Sum_probs=52.1
Q ss_pred CCCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCc---eeEEeccccCcccccCccCceecccchHHHHHHHHHHHc
Q 007192 89 SKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMV---GFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMS 165 (613)
Q Consensus 89 ~kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~---p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~ 165 (613)
+...|||+.. + -|-.+.++.+.+++...+.|.. .+.+ -+||. .+ +.+-....++.+ .
T Consensus 7 ~t~~IGvi~~---~--~~p~~~~~~~gi~~~l~~~Gy~~g~~v~l---~~~~~--~~---------~~~~~~~~~~~l-~ 66 (302)
T 2qh8_A 7 KTAKVAVSQI---V--EHPALDATRQGLLDGLKAKGYEEGKNLEF---DYKTA--QG---------NPAIAVQIARQF-V 66 (302)
T ss_dssp CCEEEEEEES---S--CCHHHHHHHHHHHHHHHHTTCCBTTTEEE---EEEEC--TT---------CHHHHHHHHHHH-H
T ss_pred CCcEEEEEEe---c--cChhHHHHHHHHHHHHHHcCCCCCCceEE---EEecC--CC---------CHHHHHHHHHHH-H
Confidence 3567999842 2 3567899999999999999862 2221 12331 11 122222334444 4
Q ss_pred ccCCCcEEEccCCCCCchh-hHHhhhccCCCeEEEc
Q 007192 166 AQWYDANISIPGCDKNMPG-TIMAMGRLNRPGIMVY 200 (613)
Q Consensus 166 a~~~Dg~V~l~gCDK~vPG-~lMaaaRlniPsi~v~ 200 (613)
.+.+||+|+++. +. ..+.....++|.||+.
T Consensus 67 ~~~vDgII~~~~-----~~~~~~~~~~~~iPvV~~~ 97 (302)
T 2qh8_A 67 GENPDVLVGIAT-----PTAQALVSATKTIPIVFTA 97 (302)
T ss_dssp HTCCSEEEEESH-----HHHHHHHHHCSSSCEEEEE
T ss_pred hCCCCEEEECCh-----HHHHHHHhcCCCcCEEEEe
Confidence 788999998752 21 1222246789998874
No 85
>2cqa_A RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP54-beta, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.40.4.14
Probab=22.15 E-value=46 Score=29.10 Aligned_cols=18 Identities=39% Similarity=0.663 Sum_probs=16.1
Q ss_pred eecCCEEEEecCCCEEEE
Q 007192 552 IQNGDIINIDVQKRRIDV 569 (613)
Q Consensus 552 V~dGD~I~IDi~~r~L~l 569 (613)
|+.||+|.||...+++.-
T Consensus 63 V~~GDVI~Id~~sG~V~k 80 (95)
T 2cqa_A 63 VQAGDVITIDKATGKISK 80 (95)
T ss_dssp CCTTSEEEEETTTTEEEE
T ss_pred ceeCCEEEEEccCCEEEE
Confidence 789999999999999864
No 86
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.91 E-value=71 Score=25.85 Aligned_cols=39 Identities=23% Similarity=0.366 Sum_probs=30.0
Q ss_pred EEeeE-EEecCHHHHHHHHh--CCCCCCCCeEEEEeCCCCCCC
Q 007192 458 FSGPA-LVFEGEESMIAAIS--EDPMSFKGKVVVIRGEGPKGG 497 (613)
Q Consensus 458 f~GpA-~VFdseeda~~aI~--~g~I~~~GdVvVIRyeGPkGg 497 (613)
.+|=| +.|+++++|.+||. ++..-. |-.|.|++.-|+..
T Consensus 52 ~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~a~~~~~ 93 (101)
T 2fc9_A 52 SKGYAFIEFASFEDAKEALNSCNKREIE-GRAIRLELQGPRGS 93 (101)
T ss_dssp BCSEEEEECSSHHHHHHHHHHTSSEEET-TEEEEEEECSSCCC
T ss_pred EeeEEEEEECCHHHHHHHHHHhCCCEeC-CeEEEEEEcCCCCC
Confidence 45666 55999999999997 665555 88899998877743
No 87
>2hi6_A UPF0107 protein AF0055; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Archaeoglobus fulgidus} SCOP: c.8.2.3
Probab=21.51 E-value=27 Score=32.47 Aligned_cols=23 Identities=9% Similarity=0.299 Sum_probs=20.3
Q ss_pred CeEEeecCCEEEEecCCCEEEEe
Q 007192 548 PIGLIQNGDIINIDVQKRRIDVQ 570 (613)
Q Consensus 548 pIAlV~dGD~I~IDi~~r~L~l~ 570 (613)
|+..+++||.|+||-+++.+++.
T Consensus 110 ~~~~i~~G~~v~vd~~~G~v~v~ 132 (141)
T 2hi6_A 110 FFEAVKTGDRVVVNADEGYVELI 132 (141)
T ss_dssp HHHHCCTTSEEEEETTTTEEEEE
T ss_pred HHHHhcCCCEEEEeCCCCEEEEe
Confidence 45778999999999999999884
No 88
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=21.30 E-value=5.8e+02 Score=24.87 Aligned_cols=87 Identities=17% Similarity=0.140 Sum_probs=53.2
Q ss_pred CCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCC
Q 007192 90 KPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWY 169 (613)
Q Consensus 90 kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~ 169 (613)
...||++.... -|..+.++.+.+.+...+.|-.-+.+++ +. +-+--...++.+ ..+.+
T Consensus 70 ~~~Igvi~~~~----~~~~~~~~~~gi~~~a~~~g~~~~~~~~----~~-------------~~~~~~~~~~~l-~~~~v 127 (355)
T 3e3m_A 70 SGFVGLLLPSL----NNLHFAQTAQSLTDVLEQGGLQLLLGYT----AY-------------SPEREEQLVETM-LRRRP 127 (355)
T ss_dssp -CEEEEEESCS----BCHHHHHHHHHHHHHHHHTTCEEEEEEC----TT-------------CHHHHHHHHHHH-HHTCC
T ss_pred CCEEEEEeCCC----CchHHHHHHHHHHHHHHHCCCEEEEEeC----CC-------------ChHHHHHHHHHH-HhCCC
Confidence 35799987642 2456788888899988888754433321 10 112223334444 35789
Q ss_pred CcEEEccCCCCCchhhHHhhhccCCCeEEEc
Q 007192 170 DANISIPGCDKNMPGTIMAMGRLNRPGIMVY 200 (613)
Q Consensus 170 Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~ 200 (613)
||+|+++.- .. .-.+-.+...++|.|++-
T Consensus 128 dGiI~~~~~-~~-~~~~~~l~~~~iPvV~i~ 156 (355)
T 3e3m_A 128 EAMVLSYDG-HT-EQTIRLLQRASIPIVEIW 156 (355)
T ss_dssp SEEEEECSC-CC-HHHHHHHHHCCSCEEEES
T ss_pred CEEEEeCCC-CC-HHHHHHHHhCCCCEEEEC
Confidence 999997643 32 234444567899999984
No 89
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=21.20 E-value=1.8e+02 Score=28.08 Aligned_cols=90 Identities=10% Similarity=0.034 Sum_probs=53.1
Q ss_pred CCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccC-
Q 007192 90 KPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQW- 168 (613)
Q Consensus 90 kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~- 168 (613)
...||++.... .|..+.++.+.+++...+.|-.-..+.+ + . +.+.-...++.+++ +.
T Consensus 5 s~~Igvi~~~~----~~~~~~~~~~gi~~~a~~~g~~l~~~~~----~----~---------~~~~~~~~i~~l~~-~~~ 62 (332)
T 2rjo_A 5 QTTLACSFRSL----TNPYYTAFNKGAQSFAKSVGLPYVPLTT----E----G---------SSEKGIADIRALLQ-KTG 62 (332)
T ss_dssp CCEEEEEESCT----TSHHHHHHHHHHHHHHHHHTCCEEEEEC----T----T---------CHHHHHHHHHHHHH-HTT
T ss_pred ccEEEEEecCC----CcHHHHHHHHHHHHHHHHcCCEEEEecC----C----C---------CHHHHHHHHHHHHH-CCC
Confidence 35789987532 3456778888888888888743322211 1 1 12233445566654 45
Q ss_pred -CCcEEEccCCCCCchhhHHhhhccCCCeEEEcc
Q 007192 169 -YDANISIPGCDKNMPGTIMAMGRLNRPGIMVYG 201 (613)
Q Consensus 169 -~Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~g 201 (613)
+||+|+.+.-.......+--+...++|.|++-.
T Consensus 63 ~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~ 96 (332)
T 2rjo_A 63 GNLVLNVDPNDSADARVIVEACSKAGAYVTTIWN 96 (332)
T ss_dssp TCEEEEECCSSHHHHHHHHHHHHHHTCEEEEESC
T ss_pred CCCEEEEeCCCHHHHHHHHHHHHHCCCeEEEECC
Confidence 999998764322222334444567999888753
No 90
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=21.16 E-value=46 Score=34.49 Aligned_cols=45 Identities=16% Similarity=0.052 Sum_probs=36.2
Q ss_pred HHHHHHHcccCCCcEEEccCCCCCchhhHHhhhccCCCeEEEccCC
Q 007192 158 DSIETVMSAQWYDANISIPGCDKNMPGTIMAMGRLNRPGIMVYGGT 203 (613)
Q Consensus 158 dsiE~~~~a~~~Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~gGp 203 (613)
..++..++.+.+|.+++.+.-+-+.|+.+ +|.+.+||.+.+.+|-
T Consensus 104 ~~l~~~l~~~kPD~Vi~~gd~~~~l~~~l-aA~~~~IPv~h~~agl 148 (403)
T 3ot5_A 104 NGINEVIAAENPDIVLVHGDTTTSFAAGL-ATFYQQKMLGHVEAGL 148 (403)
T ss_dssp HHHHHHHHHHCCSEEEEETTCHHHHHHHH-HHHHTTCEEEEESCCC
T ss_pred HHHHHHHHHcCCCEEEEECCchhHHHHHH-HHHHhCCCEEEEECCc
Confidence 35667788999999999987677777764 6678899999888775
No 91
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=21.08 E-value=3.2e+02 Score=21.87 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=28.1
Q ss_pred eEEeeEE-EecCHHHHHHHHh--CCCCCCCC---eEEEEeCCCCC
Q 007192 457 YFSGPAL-VFEGEESMIAAIS--EDPMSFKG---KVVVIRGEGPK 495 (613)
Q Consensus 457 ~f~GpA~-VFdseeda~~aI~--~g~I~~~G---dVvVIRyeGPk 495 (613)
..+|=|- .|++.++|.+||. +|..-. | ..|.|++.=|+
T Consensus 54 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~-gg~~~~l~V~~a~~~ 97 (105)
T 2dnh_A 54 SSKGCAFVKFSSHTEAQAAIHALHGSQTM-PGASSSLVVKFADTD 97 (105)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHSSCCCC-TTCSSCCEEEESCSS
T ss_pred CcCcEEEEEeCCHHHHHHHHHHHcCCccC-CCCCccEEEEECccC
Confidence 3467774 4999999999996 675444 4 67888887665
No 92
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=20.90 E-value=4.7e+02 Score=25.13 Aligned_cols=101 Identities=12% Similarity=0.113 Sum_probs=57.4
Q ss_pred HHHhCCCCcCcC-------CCCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceec
Q 007192 77 ILHGVGLSEADM-------SKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFS 149 (613)
Q Consensus 77 ~l~a~G~~ded~-------~kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ys 149 (613)
..+.+||..... +...||++.... .|..+.++.+.+++...+.|-.-+.+++ + .
T Consensus 40 aa~~lgY~pn~~ar~l~~~~~~~Ig~i~~~~----~~~~~~~~~~gi~~~a~~~g~~~~~~~~----~----~------- 100 (332)
T 2hsg_A 40 TIERLGYRPNAVARGLASKKTTTVGVIIPDI----SNIFYAELARGIEDIATMYKYNIILSNS----D----Q------- 100 (332)
T ss_dssp HHHHHTCCSCHHHHHHTTC-CCEEEEEEC------CCSHHHHHHHHHHHHHHHHTCEEEEEEC----C----S-------
T ss_pred HHHHHCCCcCHHHHHHHhCCCCEEEEEeCCC----CCcHHHHHHHHHHHHHHHcCCEEEEEeC----C----C-------
Confidence 344556654421 346899987532 2456778888888888888743322211 1 0
Q ss_pred ccchHHHHHHHHHHHcccCCCcEEEccCCCCCchhhHHhhhccCCCeEEEcc
Q 007192 150 LQSRDLIADSIETVMSAQWYDANISIPGCDKNMPGTIMAMGRLNRPGIMVYG 201 (613)
Q Consensus 150 L~sRelIAdsiE~~~~a~~~Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~g 201 (613)
+.+--...++.+ ..+.+||+|+.+.- ..- -.+-.+...++|.|++-.
T Consensus 101 --~~~~~~~~~~~l-~~~~vdgiI~~~~~-~~~-~~~~~l~~~~iPvV~~~~ 147 (332)
T 2hsg_A 101 --NQDKELHLLNNM-LGKQVDGIIFMSGN-VTE-EHVEELKKSPVPVVLAAS 147 (332)
T ss_dssp --HHHHHHHHHHHT-SCCSSCCEEECCSS-CCH-HHHHHHTTSSSCEEEESC
T ss_pred --ChHHHHHHHHHH-HhCCCcEEEEecCC-CCH-HHHHHHHhCCCCEEEEcc
Confidence 122223344544 46789999997643 222 234444567899888753
No 93
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.66 E-value=85 Score=25.48 Aligned_cols=40 Identities=18% Similarity=0.086 Sum_probs=31.4
Q ss_pred eEEeeE-EEecCHHHHHHHHh--CCCCCCCCeEEEEeCCCCCCC
Q 007192 457 YFSGPA-LVFEGEESMIAAIS--EDPMSFKGKVVVIRGEGPKGG 497 (613)
Q Consensus 457 ~f~GpA-~VFdseeda~~aI~--~g~I~~~GdVvVIRyeGPkGg 497 (613)
..+|=| +.|+++++|.+||. +|..-. |-.|.|+|.-|+..
T Consensus 55 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~a~~~~~ 97 (103)
T 2cq0_A 55 QSKGFAFISFHRREDAARAIAGVSGFGYD-HLILNVEWAKPSTN 97 (103)
T ss_dssp SEEEEEEEEESSHHHHHHHHHHTTTCEET-TEECEEEESSCCCC
T ss_pred ceeeEEEEEECCHHHHHHHHHHcCCCeeC-CcEEEEEECCCCCC
Confidence 356777 45999999999997 665555 88999999888754
No 94
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=20.58 E-value=1.4e+02 Score=28.13 Aligned_cols=68 Identities=15% Similarity=-0.021 Sum_probs=46.3
Q ss_pred CCCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccC
Q 007192 89 SKPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQW 168 (613)
Q Consensus 89 ~kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~ 168 (613)
++|.++|.++-+|+..+.. .+.=+..+++-+.+.|.......+ +.| .++.|...++..+..
T Consensus 2 ~~~~v~IistGdEll~G~i-~DtN~~~l~~~L~~~G~~v~~~~i--v~D--------------d~~~I~~~l~~a~~~-- 62 (172)
T 3kbq_A 2 NAKNASVITVGNEILKGRT-VNTNAAFIGNFLTYHGYQVRRGFV--VMD--------------DLDEIGWAFRVALEV-- 62 (172)
T ss_dssp --CEEEEEEECHHHHTTSS-CCHHHHHHHHHHHHTTCEEEEEEE--ECS--------------CHHHHHHHHHHHHHH--
T ss_pred CCCEEEEEEEcccccCCcE-EeHHHHHHHHHHHHCCCEEEEEEE--eCC--------------CHHHHHHHHHHHHhc--
Confidence 3589999999999998653 344556677777788876655544 345 378888888877653
Q ss_pred CCcEEEc
Q 007192 169 YDANISI 175 (613)
Q Consensus 169 ~Dg~V~l 175 (613)
+|-+|.-
T Consensus 63 ~DlVitt 69 (172)
T 3kbq_A 63 SDLVVSS 69 (172)
T ss_dssp CSEEEEE
T ss_pred CCEEEEc
Confidence 6744443
No 95
>4g1j_A Sortase family protein; cysteine protease, extracellular, transferase; 1.75A {Streptococcus agalactiae serogroup V} PDB: 3tb7_A 3rbi_A 3rbk_A 3tbe_A 3rbj_A
Probab=20.52 E-value=35 Score=33.67 Aligned_cols=54 Identities=22% Similarity=0.276 Sum_probs=38.6
Q ss_pred eEEEcCCCCC-CCCCC--cceEEec-ccccCCCCeEEeecCCEEEEecCCCEEEEecC
Q 007192 519 VALLTDGRFS-GGSHG--FVVGHVC-PEAQDGGPIGLIQNGDIINIDVQKRRIDVQLT 572 (613)
Q Consensus 519 VALITDGRfS-Gas~G--~~IGHVs-PEAa~GGpIAlV~dGD~I~IDi~~r~L~l~v~ 572 (613)
++-..++-|- |+..| ++.||.. |-+..-..|..++.||.|.|....+.+.-.|+
T Consensus 100 ~G~~~gt~~P~gG~~gn~VIaGHr~~~~~~~F~~L~~Lk~GD~I~v~~~~~~~~Y~V~ 157 (222)
T 4g1j_A 100 VGHLEGTSLPVGGESTHAVLTAHRGLPTAKLFTNLDKVTVGDRFYIEHIGGKIAYQVD 157 (222)
T ss_dssp EEECTTSCCSSCCTTEEEEEECCSCBTTBCTTGGGGGCCTTCEEEEEETTEEEEEEEE
T ss_pred CceecCCcCcccCCCCcEEEEEeCCCCCCchhccHhhCccCCEEEEEECCEEEEEEEe
Confidence 3334444443 34444 2349997 77777788999999999999999988777654
No 96
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=20.52 E-value=5.1e+02 Score=24.48 Aligned_cols=86 Identities=17% Similarity=0.259 Sum_probs=50.9
Q ss_pred CCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCc--eeEEeccccCcccccCccCceecccchHHHHHHHHHHHccc
Q 007192 90 KPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMV--GFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQ 167 (613)
Q Consensus 90 kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~--p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~ 167 (613)
+..|||+.. + -|-.+.++.+.+++...+.|-. -+.+ -+||. .+ +.+-....++.+ ..+
T Consensus 2 ~~~Igvi~~---~--~~p~~~~i~~gi~~~l~~~gy~g~~v~l---~~~~~--~~---------~~~~~~~~~~~l-~~~ 61 (295)
T 3lft_A 2 NAKIGVLQF---V--SHPSLDLIYKGIQDGLAEEGYKDDQVKI---DFMNS--EG---------DQSKVATMSKQL-VAN 61 (295)
T ss_dssp CEEEEEEEC---S--CCHHHHHHHHHHHHHHHHTTCCGGGEEE---EEEEC--TT---------CHHHHHHHHHHH-TTS
T ss_pred ceEEEEEEc---c--CChhHHHHHHHHHHHHHHcCCCCCceEE---EEecC--CC---------CHHHHHHHHHHH-Hhc
Confidence 467999832 2 3667899999999999999861 1111 12331 11 122223334444 578
Q ss_pred CCCcEEEccCCCCCchh-hHHhhhccCCCeEEEc
Q 007192 168 WYDANISIPGCDKNMPG-TIMAMGRLNRPGIMVY 200 (613)
Q Consensus 168 ~~Dg~V~l~gCDK~vPG-~lMaaaRlniPsi~v~ 200 (613)
.+||+|+++. +. ..+.....++|.||+.
T Consensus 62 ~vDgII~~~~-----~~~~~~~~~~~~iPvV~~~ 90 (295)
T 3lft_A 62 GNDLVVGIAT-----PAAQGLASATKDLPVIMAA 90 (295)
T ss_dssp SCSEEEEESH-----HHHHHHHHHCSSSCEEEES
T ss_pred CCCEEEECCc-----HHHHHHHHcCCCCCEEEEe
Confidence 9999998751 22 1222335789988874
No 97
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=20.35 E-value=1.5e+02 Score=27.91 Aligned_cols=85 Identities=15% Similarity=0.119 Sum_probs=58.1
Q ss_pred CeEEEE-ecCCCccccccchHHHHHHHHHHHHHcC-Cc---eeEEeccccCcccccCccCceecccchHHHHHHHHHHHc
Q 007192 91 PQVGIS-SVWYEGNTCNMHLLRLSEAVKRGVEEAG-MV---GFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMS 165 (613)
Q Consensus 91 P~IgI~-ns~~e~~Pch~hl~~la~~Vk~gI~~aG-G~---p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~ 165 (613)
..|||+ +.||+. --+.|-+-.++...+.| .. --.+.+|+.=| || +.| ..+++
T Consensus 13 ~ri~IV~arfn~~-----I~~~Ll~gA~~~l~~~G~v~~~~i~v~~VPGafE------------iP---~aa---~~la~ 69 (156)
T 3nq4_A 13 ARVAITIARFNQF-----INDSLLDGAVDALTRIGQVKDDNITVVWVPGAYE------------LP---LAT---EALAK 69 (156)
T ss_dssp CCEEEEEESTTHH-----HHHHHHHHHHHHHHHTTCCCTTSEEEEEESSTTT------------HH---HHH---HHHHH
T ss_pred CEEEEEEeeCcHH-----HHHHHHHHHHHHHHHcCCCcccceEEEEcCcHHH------------HH---HHH---HHHHh
Confidence 457755 567765 35677778888888888 42 34556666433 44 222 33345
Q ss_pred ccCCCcEEEccC------------CCCCchhhHHhhhccCCCeEE
Q 007192 166 AQWYDANISIPG------------CDKNMPGTIMAMGRLNRPGIM 198 (613)
Q Consensus 166 a~~~Dg~V~l~g------------CDK~vPG~lMaaaRlniPsi~ 198 (613)
...|||+|+|+- |+-..-|.+...+..|+|.+|
T Consensus 70 ~~~yDavIaLG~VIrG~T~Hfd~Va~~v~~Gl~~v~L~~~vPV~~ 114 (156)
T 3nq4_A 70 SGKYDAVVALGTVIRGGTAHFEYVAGGASNGLASVAQDSGVPVAF 114 (156)
T ss_dssp HCSCSEEEEEEEEECCSSTHHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_pred cCCCCEEEEeeeeecCCchHHHHHHHHHHHHHHHHHhccCCCEEE
Confidence 678999999973 566677888888888999988
No 98
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=20.19 E-value=1.1e+02 Score=28.80 Aligned_cols=86 Identities=12% Similarity=0.125 Sum_probs=59.0
Q ss_pred CeEEEE-ecCCCccccccchHHHHHHHHHHHHHcCCce---eEEeccccCcccccCccCceecccchHHHHHHHHHHHcc
Q 007192 91 PQVGIS-SVWYEGNTCNMHLLRLSEAVKRGVEEAGMVG---FRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSA 166 (613)
Q Consensus 91 P~IgI~-ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p---~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a 166 (613)
..|||+ +.||+. --+.|-+-.++.+.+.|... -.+.+|+. |-|| +. +..+.+.
T Consensus 11 ~ri~IV~arfn~~-----I~~~Ll~gA~~~l~~~gv~~~~i~v~~VPGa------------fEiP---~a---a~~la~~ 67 (158)
T 1di0_A 11 FKIAFIQARWHAD-----IVDEARKSFVAELAAKTGGSVEVEIFDVPGA------------YEIP---LH---AKTLART 67 (158)
T ss_dssp EEEEEEEECTTHH-----HHHHHHHHHHHHHHHHHTTSEEEEEEEESSG------------GGHH---HH---HHHHHHT
T ss_pred CEEEEEEEeCcHH-----HHHHHHHHHHHHHHHcCCCccceEEEECCcH------------HHHH---HH---HHHHHhc
Confidence 457776 557765 34677777888888888655 34456554 3344 22 2344567
Q ss_pred cCCCcEEEccC------------CCCCchhhHHhhhccCCCeEEE
Q 007192 167 QWYDANISIPG------------CDKNMPGTIMAMGRLNRPGIMV 199 (613)
Q Consensus 167 ~~~Dg~V~l~g------------CDK~vPG~lMaaaRlniPsi~v 199 (613)
..|||+|+|+- |+-..=|.+...+..|+|.+|.
T Consensus 68 ~~yDavIaLG~VIrG~T~Hfd~Va~~vs~Gl~~v~L~~~vPV~~G 112 (158)
T 1di0_A 68 GRYAAIVGAAFVIDGGIYDHDFVATAVINGMMQVQLETEVPVLSV 112 (158)
T ss_dssp SCCSEEEEEEECCCCSSBCCHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCCCEEEEeeccccCCCcHHHHHHHHHHHHHHHHHhhcCCCEEEE
Confidence 88999999974 5556678888888899999985
No 99
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=20.18 E-value=1.5e+02 Score=27.73 Aligned_cols=88 Identities=14% Similarity=0.100 Sum_probs=56.2
Q ss_pred CeEEEEe-cCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceeccc--chHHHHHHHHHHHccc
Q 007192 91 PQVGISS-VWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQ--SRDLIADSIETVMSAQ 167 (613)
Q Consensus 91 P~IgI~n-s~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~--sRelIAdsiE~~~~a~ 167 (613)
..|||+. .||+. --+.|-+-.++.+.+.|-.--.+.+|+. |-|| .+.+. .+.. .+..
T Consensus 13 ~ri~IV~arfn~~-----I~~~Ll~gA~~~l~~~G~~i~v~~VPGa------------fEiP~aa~~la-~~~~--~~~~ 72 (157)
T 2i0f_A 13 PHLLIVEARFYDD-----LADALLDGAKAALDEAGATYDVVTVPGA------------LEIPATISFAL-DGAD--NGGT 72 (157)
T ss_dssp CEEEEEEECSSHH-----HHHHHHHHHHHHHHHTTCEEEEEEESSG------------GGHHHHHHHHH-HHHH--TTCC
T ss_pred cEEEEEEEeCcHH-----HHHHHHHHHHHHHHHcCCCeEEEECCcH------------HHHHHHHHHHH-hhcc--ccCC
Confidence 6688764 57765 3567778888888889932233344443 3344 22222 1111 1347
Q ss_pred CCCcEEEccC------------CCCCchhhHHhhhccCCCeEE
Q 007192 168 WYDANISIPG------------CDKNMPGTIMAMGRLNRPGIM 198 (613)
Q Consensus 168 ~~Dg~V~l~g------------CDK~vPG~lMaaaRlniPsi~ 198 (613)
.|||+|+|+- |+-..-|.+-..+..|+|.+|
T Consensus 73 ~yDavIaLG~VIrG~T~Hfd~Va~~v~~gl~~vsl~~~vPV~~ 115 (157)
T 2i0f_A 73 EYDGFVALGTVIRGETYHFDIVSNESCRALTDLSVEESIAIGN 115 (157)
T ss_dssp CCSEEEEEEEEECCSSSTTHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCEEEEeeeeecCCchHHHHHHHHHHHHHHHHHhhcCCCEEE
Confidence 8999999973 566677888888889999988
No 100
>4g9q_A 4-carboxymuconolactone decarboxylase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.77A {Sinorhizobium meliloti}
Probab=20.12 E-value=2.1e+02 Score=28.96 Aligned_cols=125 Identities=17% Similarity=0.161 Sum_probs=67.6
Q ss_pred HHHhcCCCCHHHHHHHHHhcCCCCCCCCccchHHHHHHHHHHhcCCCCC---CCCCCCCChhHHH--HHH----------
Q 007192 224 GEYVSGSISDEQRMNVVLNSCPGAGACGGMYTANTMASAIEAMGMSLPY---SSSIPAEDPLKLD--ECR---------- 288 (613)
Q Consensus 224 g~~~~G~i~~eel~~~E~~acp~~GsC~~mgTANTM~~~~EaLGm~LPG---sa~~pA~~~~r~~--~a~---------- 288 (613)
+++..| +|.+|++|+--++++-+|--..+.-.+...-+.+--|+..|- ....|-...++.. ...
T Consensus 99 ~Al~~G-~T~~EI~Evl~q~~~Y~G~P~a~~a~~~~~ev~~erGi~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~a 177 (269)
T 4g9q_A 99 QALENG-VKPSEISETITHLAYYSGWGKAMATVGPVSEAFAKRGIGQDQLAAVESTPLPLDEEAEAQRATTVGNQFGSVA 177 (269)
T ss_dssp HHHHTT-CCHHHHHHHHHHHHHHTCHHHHHTTHHHHHHHHHHTTCCGGGSCCSSCCCCCCCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHcC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCccccCcccccchhHHHHHHHHHHHHHHHHHhC
Confidence 367777 999999999888887766544444444444455556776542 2222221111111 111
Q ss_pred -HHHHHHHHHHhCCCCcccccCHHHHH-HHHHHHHhcCCCchhHHhHHHHHHHhCCCCChHHHHHh
Q 007192 289 -LAGKYLLELLRMDLKPRDIITKKSLR-NAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKV 352 (613)
Q Consensus 289 -~aG~~iv~lv~~~i~PrdIlT~~af~-NAi~v~~A~GGSTNavLHL~AIA~eagi~ltl~dfd~i 352 (613)
+-.+.+.+.+.-++=.|+-++.+.=+ =.|.+++|+|+..-.-.|+- .|.+.| +|-+++.++
T Consensus 178 P~~~~~~~~~~fGdi~~r~~L~~k~ReLitia~l~a~g~~~ql~~Hi~-~Al~~G--~T~eEi~Ev 240 (269)
T 4g9q_A 178 PGLVQYTTDYLFRDLWLRPDLAPRDRSLVTIAALISVGQVEQITFHLN-KALDNG--LSEEQAAEV 240 (269)
T ss_dssp HHHHHHHHHHTTTTGGGCTTSCHHHHHHHHHHHHHHTTCGGGHHHHHH-HHHHTT--CCHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHhccCccHhHHHHHHHHHHHHCCChHHHHHHHH-HHHHcC--CCHHHHHHH
Confidence 11122222222233334445544322 34677888888766667764 566677 577777666
No 101
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin S; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti}
Probab=20.12 E-value=97 Score=29.09 Aligned_cols=91 Identities=14% Similarity=0.165 Sum_probs=61.2
Q ss_pred CcCCCCeEEEE-ecCCCccccccchHHHHHHHHHHHHHcCCce---eEEeccccCcccccCccCceecccchHHHHHHHH
Q 007192 86 ADMSKPQVGIS-SVWYEGNTCNMHLLRLSEAVKRGVEEAGMVG---FRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIE 161 (613)
Q Consensus 86 ed~~kP~IgI~-ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p---~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE 161 (613)
.+++...|||+ +.||+. --+.|-+-.++.+...|... -.+.+|+.= -|| +.+ .
T Consensus 7 ~~~~~~ri~IV~arfn~~-----I~~~Ll~gA~~~l~~~Gv~~~~i~v~~VPGaf------------EiP---~aa---~ 63 (157)
T 2obx_A 7 KDYETVRIAVVRARWHAD-----IVDQCVSAFEAEMADIGGDRFAVDVFDVPGAY------------EIP---LHA---R 63 (157)
T ss_dssp CSCCCEEEEEEEECTTHH-----HHHHHHHHHHHHHHHHHTTSEEEEEEEESSGG------------GHH---HHH---H
T ss_pred CCCCCCEEEEEEeeCcHH-----HHHHHHHHHHHHHHHcCCCccceEEEECCcHH------------HHH---HHH---H
Confidence 34444568876 457765 34677777888888888655 344565543 344 222 3
Q ss_pred HHHcccCCCcEEEccC------------CCCCchhhHHhhhccCCCeEEE
Q 007192 162 TVMSAQWYDANISIPG------------CDKNMPGTIMAMGRLNRPGIMV 199 (613)
Q Consensus 162 ~~~~a~~~Dg~V~l~g------------CDK~vPG~lMaaaRlniPsi~v 199 (613)
.+.+...|||+|+|+- |+-..=|.+...+..|+|.+|.
T Consensus 64 ~la~~~~yDavIaLG~VIrG~T~Hfd~Va~~vs~Gl~~v~L~~~vPV~~G 113 (157)
T 2obx_A 64 TLAETGRYGAVLGTAFVVNGGIYRHEFVASAVIDGMMNVQLSTGVPVLSA 113 (157)
T ss_dssp HHHHHTCCSEEEEEEECCCCSSBCCHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred HHHhcCCCCEEEEeeccccCCCcHHHHHHHHHHHHHHHHHhhcCCCEEEE
Confidence 3345678999999974 5556678888888899999985
No 102
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=20.10 E-value=58 Score=33.47 Aligned_cols=45 Identities=16% Similarity=0.082 Sum_probs=34.9
Q ss_pred HHHHHHHcccCCCcEEEccCCCCCchhhHHhhhccCCCeEEEccCC
Q 007192 158 DSIETVMSAQWYDANISIPGCDKNMPGTIMAMGRLNRPGIMVYGGT 203 (613)
Q Consensus 158 dsiE~~~~a~~~Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~gGp 203 (613)
..++..++.+.+|.+++.+.=.-+.|+.+ +|.+.+||.+.+.+|-
T Consensus 101 ~~l~~~l~~~kPDvVi~~g~~~~~~~~~~-aa~~~~IPv~h~~ag~ 145 (396)
T 3dzc_A 101 LGMQQVLSSEQPDVVLVHGDTATTFAASL-AAYYQQIPVGHVEAGL 145 (396)
T ss_dssp HHHHHHHHHHCCSEEEEETTSHHHHHHHH-HHHTTTCCEEEETCCC
T ss_pred HHHHHHHHhcCCCEEEEECCchhHHHHHH-HHHHhCCCEEEEECCc
Confidence 34666788899999999886555677764 6778999998888765
No 103
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=20.07 E-value=5.1e+02 Score=25.32 Aligned_cols=87 Identities=14% Similarity=0.248 Sum_probs=50.1
Q ss_pred CCeEEEEecCCCccccccchHHHHHHHHHHHHHcCCceeEEeccccCcccccCccCceecccchHHHHHHHHHHHcccCC
Q 007192 90 KPQVGISSVWYEGNTCNMHLLRLSEAVKRGVEEAGMVGFRFNTIGVSDAISMGTKGMCFSLQSRDLIADSIETVMSAQWY 169 (613)
Q Consensus 90 kP~IgI~ns~~e~~Pch~hl~~la~~Vk~gI~~aGG~p~ef~tiav~Dgia~g~~GM~ysL~sRelIAdsiE~~~~a~~~ 169 (613)
...||++.... -|-.+.++.+.+++...+.|-.-+.+++ + . +.+--.+.++.+. .+.+
T Consensus 66 s~~Igvi~~~~----~~~~~~~~~~gi~~~a~~~g~~~~~~~~----~----~---------~~~~~~~~~~~l~-~~~v 123 (348)
T 3bil_A 66 SNTIGVIVPSL----INHYFAAMVTEIQSTASKAGLATIITNS----N----E---------DATTMSGSLEFLT-SHGV 123 (348)
T ss_dssp --CEEEEESCS----SSHHHHHHHHHHHHHHHHTTCCEEEEEC----T----T---------CHHHHHHHHHHHH-HTTC
T ss_pred CCEEEEEeCCC----CCcHHHHHHHHHHHHHHHcCCEEEEEeC----C----C---------CHHHHHHHHHHHH-hCCC
Confidence 35799987532 2456778888888888888743332221 1 0 1222233445444 5789
Q ss_pred CcEEEccCCCCCchhhHHhhhccCCCeEEEc
Q 007192 170 DANISIPGCDKNMPGTIMAMGRLNRPGIMVY 200 (613)
Q Consensus 170 Dg~V~l~gCDK~vPG~lMaaaRlniPsi~v~ 200 (613)
||+|+.+. +.. .-.+-.+...++|.|++-
T Consensus 124 dgiI~~~~-~~~-~~~~~~l~~~~iPvV~i~ 152 (348)
T 3bil_A 124 DGIICVPN-EEC-ANQLEDLQKQGMPVVLVD 152 (348)
T ss_dssp SCEEECCC-GGG-HHHHHHHHHC-CCEEEES
T ss_pred CEEEEeCC-CCC-hHHHHHHHhCCCCEEEEc
Confidence 99998764 322 233444456799988874
Done!