Query 007193
Match_columns 613
No_of_seqs 757 out of 3951
Neff 10.7
Searched_HMMs 46136
Date Thu Mar 28 20:12:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007193.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007193hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 2.7E-91 5.8E-96 759.0 73.0 585 23-607 368-952 (1060)
2 PLN03077 Protein ECB2; Provisi 100.0 1.1E-69 2.3E-74 602.4 46.0 519 30-580 56-661 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 8.4E-67 1.8E-71 579.2 52.0 543 27-609 150-770 (857)
4 PLN03218 maturation of RBCL 1; 100.0 6.2E-63 1.3E-67 537.5 58.4 465 31-503 412-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 1.5E-62 3.2E-67 532.6 48.2 500 66-608 92-606 (697)
6 PLN03081 pentatricopeptide (PP 100.0 7.8E-59 1.7E-63 503.5 48.4 461 27-504 121-612 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.1E-26 2.4E-31 263.8 61.2 515 33-571 337-871 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 6E-26 1.3E-30 257.8 61.6 511 31-562 369-898 (899)
9 PRK11788 tetratricopeptide rep 99.9 3.8E-20 8.2E-25 188.6 36.4 300 102-444 45-353 (389)
10 PRK11788 tetratricopeptide rep 99.9 7.6E-20 1.7E-24 186.3 36.3 276 172-455 45-326 (389)
11 PRK11447 cellulose synthase su 99.9 6.2E-17 1.4E-21 185.1 60.3 285 22-313 59-428 (1157)
12 PRK11447 cellulose synthase su 99.9 9.6E-18 2.1E-22 191.7 48.9 388 34-438 278-700 (1157)
13 PRK15174 Vi polysaccharide exp 99.9 4.9E-17 1.1E-21 173.9 47.8 358 34-402 14-380 (656)
14 KOG4626 O-linked N-acetylgluco 99.9 3.4E-18 7.4E-23 166.1 33.6 395 29-443 52-454 (966)
15 PRK15174 Vi polysaccharide exp 99.8 6.8E-17 1.5E-21 172.9 45.6 325 33-368 50-381 (656)
16 KOG4626 O-linked N-acetylgluco 99.8 5.2E-18 1.1E-22 164.9 33.1 388 37-444 94-489 (966)
17 TIGR00990 3a0801s09 mitochondr 99.8 1.3E-16 2.8E-21 171.4 47.3 393 33-438 135-571 (615)
18 PRK10049 pgaA outer membrane p 99.8 2.8E-16 6.2E-21 171.8 47.1 397 33-444 23-460 (765)
19 KOG4422 Uncharacterized conser 99.8 1.9E-15 4.1E-20 141.1 43.7 399 32-440 122-592 (625)
20 TIGR00990 3a0801s09 mitochondr 99.8 3.5E-15 7.5E-20 160.3 49.3 221 211-438 308-537 (615)
21 PRK14574 hmsH outer membrane p 99.8 1.4E-14 3E-19 155.5 49.6 442 22-476 31-518 (822)
22 PRK10049 pgaA outer membrane p 99.8 1.2E-14 2.7E-19 159.0 45.0 394 67-473 21-458 (765)
23 PRK09782 bacteriophage N4 rece 99.7 2.2E-12 4.8E-17 141.7 55.3 417 99-534 189-710 (987)
24 KOG2002 TPR-containing nuclear 99.7 2E-13 4.3E-18 140.4 41.9 466 21-502 266-804 (1018)
25 PRK09782 bacteriophage N4 rece 99.7 9.8E-12 2.1E-16 136.6 56.9 432 28-475 185-710 (987)
26 PRK14574 hmsH outer membrane p 99.7 1.8E-12 4E-17 139.4 48.2 415 70-493 43-503 (822)
27 KOG2002 TPR-containing nuclear 99.7 1.6E-12 3.5E-17 133.9 38.8 426 20-455 337-816 (1018)
28 KOG4422 Uncharacterized conser 99.7 9.6E-12 2.1E-16 116.7 40.5 314 91-411 115-470 (625)
29 KOG2003 TPR repeat-containing 99.7 4.9E-13 1.1E-17 126.0 30.0 409 37-456 213-706 (840)
30 KOG2076 RNA polymerase III tra 99.6 2.5E-11 5.5E-16 124.4 38.5 366 31-401 145-553 (895)
31 KOG1915 Cell cycle control pro 99.6 5.5E-10 1.2E-14 106.5 42.6 417 37-468 85-533 (677)
32 KOG1155 Anaphase-promoting com 99.6 1.6E-10 3.5E-15 109.9 38.8 258 170-436 235-493 (559)
33 PF13429 TPR_15: Tetratricopep 99.6 2.2E-14 4.9E-19 138.4 12.4 221 135-363 52-272 (280)
34 TIGR00540 hemY_coli hemY prote 99.6 2.9E-11 6.3E-16 122.9 35.1 292 72-366 95-397 (409)
35 KOG0495 HAT repeat protein [RN 99.5 2.3E-09 5E-14 106.3 45.2 455 29-509 410-877 (913)
36 KOG2076 RNA polymerase III tra 99.5 2.4E-10 5.1E-15 117.5 39.8 360 72-436 150-553 (895)
37 PRK10747 putative protoheme IX 99.5 4E-11 8.6E-16 121.2 34.2 285 105-402 97-389 (398)
38 PF13429 TPR_15: Tetratricopep 99.5 6.7E-14 1.4E-18 135.1 13.1 255 32-295 15-274 (280)
39 KOG1155 Anaphase-promoting com 99.5 8E-10 1.7E-14 105.3 39.6 302 135-451 235-547 (559)
40 PRK10747 putative protoheme IX 99.5 4.8E-11 1E-15 120.6 34.1 283 140-437 97-389 (398)
41 TIGR00540 hemY_coli hemY prote 99.5 1.4E-10 2.9E-15 118.0 34.3 287 103-399 95-395 (409)
42 KOG0495 HAT repeat protein [RN 99.5 2.8E-08 6.1E-13 98.8 47.6 415 24-455 375-798 (913)
43 COG2956 Predicted N-acetylgluc 99.5 9.2E-10 2E-14 100.2 33.9 221 105-333 48-278 (389)
44 KOG2003 TPR repeat-containing 99.5 2.5E-10 5.5E-15 108.0 30.4 392 66-467 206-685 (840)
45 KOG1126 DNA-binding cell divis 99.4 6.7E-11 1.4E-15 117.8 25.9 283 142-438 334-620 (638)
46 KOG1126 DNA-binding cell divis 99.4 9.4E-11 2E-15 116.7 26.2 284 107-404 334-621 (638)
47 COG2956 Predicted N-acetylgluc 99.4 1.4E-09 3E-14 99.0 30.9 269 140-420 48-326 (389)
48 KOG1915 Cell cycle control pro 99.4 4.9E-08 1.1E-12 93.5 42.4 398 28-438 106-536 (677)
49 COG3071 HemY Uncharacterized e 99.4 2.7E-09 5.9E-14 100.2 32.6 285 105-401 97-388 (400)
50 KOG4318 Bicoid mRNA stability 99.4 3.1E-10 6.7E-15 116.0 25.8 251 114-389 12-286 (1088)
51 KOG0547 Translocase of outer m 99.4 1E-08 2.2E-13 98.6 34.0 378 34-437 124-565 (606)
52 KOG1173 Anaphase-promoting com 99.3 6.3E-09 1.4E-13 101.8 32.2 371 70-454 150-532 (611)
53 COG3071 HemY Uncharacterized e 99.3 1.5E-08 3.2E-13 95.4 33.5 286 140-437 97-389 (400)
54 PF13041 PPR_2: PPR repeat fam 99.3 5E-12 1.1E-16 85.6 6.5 50 372-421 1-50 (50)
55 PF13041 PPR_2: PPR repeat fam 99.3 6E-12 1.3E-16 85.2 6.7 50 160-209 1-50 (50)
56 PRK12370 invasion protein regu 99.3 3.6E-09 7.9E-14 111.8 30.0 248 74-334 274-536 (553)
57 KOG2047 mRNA splicing factor [ 99.3 3.8E-07 8.3E-12 90.8 40.8 406 34-450 111-590 (835)
58 TIGR02521 type_IV_pilW type IV 99.3 5.1E-09 1.1E-13 98.1 27.4 195 129-328 33-227 (234)
59 KOG4318 Bicoid mRNA stability 99.3 2.3E-10 4.9E-15 117.0 18.6 253 148-425 11-287 (1088)
60 TIGR02521 type_IV_pilW type IV 99.3 5.3E-09 1.1E-13 98.0 27.2 200 234-437 31-231 (234)
61 PRK12370 invasion protein regu 99.3 1E-08 2.2E-13 108.4 31.5 249 195-454 254-519 (553)
62 KOG1173 Anaphase-promoting com 99.2 5.6E-08 1.2E-12 95.4 32.3 287 122-418 239-531 (611)
63 KOG2376 Signal recognition par 99.2 5.3E-06 1.2E-10 82.2 43.9 421 27-470 14-519 (652)
64 KOG1129 TPR repeat-containing 99.2 3.9E-09 8.4E-14 96.2 19.7 228 202-437 228-457 (478)
65 PF12569 NARP1: NMDA receptor- 99.2 2.2E-07 4.9E-12 95.0 34.3 290 136-437 13-333 (517)
66 PF12569 NARP1: NMDA receptor- 99.1 1.9E-07 4E-12 95.6 32.3 288 71-366 14-332 (517)
67 KOG1129 TPR repeat-containing 99.1 6E-09 1.3E-13 95.0 18.6 238 161-408 222-461 (478)
68 KOG1156 N-terminal acetyltrans 99.1 7.1E-06 1.5E-10 82.3 41.1 389 37-440 19-470 (700)
69 KOG1174 Anaphase-promoting com 99.1 8E-06 1.7E-10 77.4 38.8 398 28-437 46-499 (564)
70 KOG1840 Kinesin light chain [C 99.1 1.1E-07 2.4E-12 96.0 27.9 240 197-436 199-477 (508)
71 KOG1840 Kinesin light chain [C 99.1 2.8E-07 6.1E-12 93.2 30.0 239 127-365 199-476 (508)
72 KOG3785 Uncharacterized conser 99.1 5.8E-06 1.3E-10 76.7 35.4 389 32-451 29-434 (557)
73 KOG0547 Translocase of outer m 99.1 5.8E-06 1.3E-10 80.1 36.5 154 280-437 337-490 (606)
74 KOG1156 N-terminal acetyltrans 99.0 3.5E-05 7.6E-10 77.5 40.3 354 73-438 19-434 (700)
75 PRK11189 lipoprotein NlpI; Pro 99.0 1E-06 2.2E-11 85.4 29.1 219 211-439 40-266 (296)
76 PRK11189 lipoprotein NlpI; Pro 99.0 4E-07 8.7E-12 88.1 25.0 205 93-309 65-275 (296)
77 KOG3785 Uncharacterized conser 99.0 2.1E-05 4.6E-10 73.1 34.2 168 27-205 57-227 (557)
78 COG3063 PilF Tfp pilus assembl 98.9 2.2E-06 4.8E-11 75.1 24.9 196 132-332 40-235 (250)
79 cd05804 StaR_like StaR_like; a 98.9 1.4E-05 3E-10 80.4 35.0 20 418-437 316-335 (355)
80 cd05804 StaR_like StaR_like; a 98.9 1.8E-05 3.8E-10 79.6 35.4 91 203-296 120-213 (355)
81 COG3063 PilF Tfp pilus assembl 98.9 2.5E-06 5.5E-11 74.7 24.5 196 238-437 39-235 (250)
82 KOG2047 mRNA splicing factor [ 98.9 0.00013 2.8E-09 73.4 45.3 453 26-503 24-585 (835)
83 KOG4162 Predicted calmodulin-b 98.9 3.8E-05 8.2E-10 78.8 35.6 373 58-437 320-782 (799)
84 KOG1174 Anaphase-promoting com 98.8 7.2E-06 1.6E-10 77.7 27.4 268 89-368 229-500 (564)
85 PRK04841 transcriptional regul 98.8 0.00011 2.4E-09 83.8 41.9 337 102-438 384-760 (903)
86 KOG2376 Signal recognition par 98.8 0.00014 3.1E-09 72.4 35.5 380 32-435 53-517 (652)
87 KOG0624 dsRNA-activated protei 98.7 0.0002 4.2E-09 66.6 33.7 300 58-368 35-370 (504)
88 PF04733 Coatomer_E: Coatomer 98.7 8.2E-07 1.8E-11 84.7 17.2 82 249-332 182-264 (290)
89 PF12854 PPR_1: PPR repeat 98.7 2.6E-08 5.6E-13 60.4 4.2 32 157-188 2-33 (34)
90 KOG3616 Selective LIM binding 98.7 7.3E-05 1.6E-09 76.0 30.5 192 136-363 741-932 (1636)
91 KOG4162 Predicted calmodulin-b 98.7 0.00021 4.7E-09 73.5 34.1 362 34-402 332-782 (799)
92 PF04733 Coatomer_E: Coatomer 98.7 1.3E-06 2.8E-11 83.3 17.0 149 243-402 111-264 (290)
93 PF12854 PPR_1: PPR repeat 98.7 3.3E-08 7.2E-13 59.9 3.8 32 369-400 2-33 (34)
94 PRK04841 transcriptional regul 98.6 0.00031 6.6E-09 80.2 39.0 333 72-404 385-761 (903)
95 KOG0548 Molecular co-chaperone 98.6 0.00018 3.8E-09 71.1 30.8 405 32-472 9-456 (539)
96 KOG4340 Uncharacterized conser 98.6 0.00019 4.1E-09 65.4 28.0 187 31-226 16-207 (459)
97 KOG1070 rRNA processing protei 98.6 4.5E-05 9.8E-10 83.0 26.9 230 194-428 1455-1690(1710)
98 KOG3617 WD40 and TPR repeat-co 98.5 0.0011 2.3E-08 68.8 34.1 163 36-223 811-993 (1416)
99 PLN02789 farnesyltranstransfer 98.5 0.00015 3.3E-09 70.2 27.5 212 97-316 42-267 (320)
100 KOG1127 TPR repeat-containing 98.5 0.00031 6.7E-09 74.2 30.5 75 38-114 471-548 (1238)
101 KOG0624 dsRNA-activated protei 98.5 0.00056 1.2E-08 63.7 28.3 359 22-409 35-426 (504)
102 KOG1128 Uncharacterized conser 98.5 1.3E-05 2.9E-10 81.5 19.4 216 129-367 400-615 (777)
103 KOG1070 rRNA processing protei 98.5 9.5E-05 2.1E-09 80.6 26.3 231 91-326 1457-1693(1710)
104 KOG1125 TPR repeat-containing 98.5 1.7E-05 3.6E-10 78.8 18.6 218 207-436 295-525 (579)
105 KOG1128 Uncharacterized conser 98.4 1.6E-05 3.5E-10 80.9 18.7 210 168-400 404-613 (777)
106 KOG3616 Selective LIM binding 98.4 0.00052 1.1E-08 70.0 28.8 286 73-402 718-1023(1636)
107 PLN02789 farnesyltranstransfer 98.4 0.00051 1.1E-08 66.6 28.3 209 135-351 45-267 (320)
108 KOG0985 Vesicle coat protein c 98.4 0.0025 5.4E-08 67.7 34.0 204 139-388 1060-1263(1666)
109 KOG1125 TPR repeat-containing 98.4 6.3E-05 1.4E-09 74.8 21.3 252 137-395 295-563 (579)
110 KOG0985 Vesicle coat protein c 98.4 0.0056 1.2E-07 65.2 37.0 235 23-292 982-1217(1666)
111 KOG1914 mRNA cleavage and poly 98.4 0.0033 7.1E-08 62.4 36.4 394 50-453 11-481 (656)
112 TIGR03302 OM_YfiO outer membra 98.4 5.6E-05 1.2E-09 70.9 19.9 186 89-299 30-233 (235)
113 KOG3617 WD40 and TPR repeat-co 98.4 0.00053 1.2E-08 70.9 27.3 231 70-330 737-993 (1416)
114 KOG1914 mRNA cleavage and poly 98.4 0.0039 8.5E-08 61.9 37.1 406 26-437 17-500 (656)
115 COG5010 TadD Flp pilus assembl 98.3 0.00011 2.4E-09 66.1 19.6 153 100-258 74-226 (257)
116 KOG4340 Uncharacterized conser 98.3 0.00054 1.2E-08 62.5 23.9 318 95-434 13-335 (459)
117 TIGR03302 OM_YfiO outer membra 98.3 0.00013 2.8E-09 68.5 21.3 56 312-367 174-231 (235)
118 KOG3081 Vesicle coat complex C 98.3 0.00092 2E-08 60.3 23.9 173 113-298 94-271 (299)
119 PRK10370 formate-dependent nit 98.3 0.0002 4.3E-09 64.5 20.3 115 319-437 54-172 (198)
120 PRK10370 formate-dependent nit 98.3 0.00028 6.2E-09 63.5 21.0 116 249-367 54-172 (198)
121 COG5010 TadD Flp pilus assembl 98.3 0.0003 6.6E-09 63.3 20.6 158 201-364 70-227 (257)
122 KOG0548 Molecular co-chaperone 98.3 0.003 6.6E-08 62.7 29.1 356 71-454 12-402 (539)
123 COG4783 Putative Zn-dependent 98.2 0.0049 1.1E-07 60.7 29.2 242 24-298 201-454 (484)
124 PRK14720 transcript cleavage f 98.2 0.00091 2E-08 72.5 26.1 239 89-385 28-268 (906)
125 PRK15359 type III secretion sy 98.2 0.0001 2.2E-09 62.8 15.5 95 95-191 27-121 (144)
126 COG4783 Putative Zn-dependent 98.2 0.0095 2.1E-07 58.7 31.0 141 276-437 313-453 (484)
127 PRK14720 transcript cleavage f 98.2 0.0017 3.8E-08 70.4 27.0 141 32-191 38-178 (906)
128 PRK15359 type III secretion sy 98.1 0.00017 3.7E-09 61.3 15.8 90 311-402 31-120 (144)
129 PRK15179 Vi polysaccharide bio 98.1 0.00077 1.7E-08 72.2 23.6 235 126-386 27-267 (694)
130 TIGR00756 PPR pentatricopeptid 98.1 4.7E-06 1E-10 51.2 4.2 33 376-408 2-34 (35)
131 PRK15179 Vi polysaccharide bio 98.1 0.0019 4.2E-08 69.3 26.1 163 230-402 82-244 (694)
132 KOG3081 Vesicle coat complex C 98.1 0.0028 6.2E-08 57.3 22.4 118 315-437 148-270 (299)
133 TIGR00756 PPR pentatricopeptid 98.1 6.3E-06 1.4E-10 50.7 4.2 33 164-196 2-34 (35)
134 TIGR02552 LcrH_SycD type III s 98.0 0.0003 6.5E-09 59.3 14.9 86 314-401 27-112 (135)
135 PF13812 PPR_3: Pentatricopept 98.0 1.2E-05 2.5E-10 49.1 4.1 33 163-195 2-34 (34)
136 PF13812 PPR_3: Pentatricopept 98.0 1.1E-05 2.3E-10 49.2 3.8 32 376-407 3-34 (34)
137 TIGR02552 LcrH_SycD type III s 97.9 0.0005 1.1E-08 58.0 15.1 93 130-224 20-112 (135)
138 KOG3060 Uncharacterized conser 97.9 0.013 2.8E-07 52.7 23.2 186 176-367 26-219 (289)
139 KOG2053 Mitochondrial inherita 97.9 0.058 1.3E-06 57.3 33.0 223 73-301 21-258 (932)
140 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.0011 2.3E-08 65.8 17.0 125 94-225 171-296 (395)
141 PF10037 MRP-S27: Mitochondria 97.8 0.0003 6.6E-09 69.9 13.1 117 304-420 66-184 (429)
142 KOG1127 TPR repeat-containing 97.7 0.1 2.2E-06 56.2 34.2 184 142-332 473-658 (1238)
143 PF10037 MRP-S27: Mitochondria 97.7 0.00074 1.6E-08 67.2 14.1 125 193-317 62-186 (429)
144 PF01535 PPR: PPR repeat; Int 97.7 3.6E-05 7.9E-10 45.6 3.0 29 376-404 2-30 (31)
145 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.0019 4.1E-08 64.1 16.5 120 240-365 175-294 (395)
146 PF01535 PPR: PPR repeat; Int 97.7 4.3E-05 9.2E-10 45.4 3.3 29 164-192 2-30 (31)
147 PF09976 TPR_21: Tetratricopep 97.7 0.0042 9.1E-08 53.0 16.1 85 170-258 56-142 (145)
148 PF09976 TPR_21: Tetratricopep 97.7 0.0031 6.7E-08 53.8 15.3 17 245-261 59-75 (145)
149 PF08579 RPM2: Mitochondrial r 97.6 0.00079 1.7E-08 52.3 10.0 41 99-139 32-73 (120)
150 PF08579 RPM2: Mitochondrial r 97.6 0.00085 1.8E-08 52.1 10.0 81 129-209 27-116 (120)
151 KOG2053 Mitochondrial inherita 97.6 0.16 3.6E-06 54.0 44.5 67 377-445 439-509 (932)
152 KOG3060 Uncharacterized conser 97.6 0.059 1.3E-06 48.7 23.8 185 107-298 27-220 (289)
153 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0041 9E-08 50.8 14.1 18 205-222 47-64 (119)
154 cd00189 TPR Tetratricopeptide 97.5 0.0022 4.7E-08 49.6 11.6 90 98-189 6-95 (100)
155 PRK15363 pathogenicity island 97.5 0.003 6.5E-08 53.1 12.1 93 27-121 36-132 (157)
156 PF06239 ECSIT: Evolutionarily 97.4 0.0043 9.4E-08 54.7 12.5 51 231-281 44-99 (228)
157 cd00189 TPR Tetratricopeptide 97.4 0.0042 9.1E-08 47.9 11.9 14 349-362 78-91 (100)
158 TIGR02795 tol_pal_ybgF tol-pal 97.4 0.0084 1.8E-07 48.9 14.1 98 201-298 6-105 (119)
159 PF06239 ECSIT: Evolutionarily 97.3 0.0029 6.2E-08 55.8 11.0 100 338-456 46-150 (228)
160 KOG2041 WD40 repeat protein [G 97.3 0.12 2.6E-06 53.3 23.6 333 77-451 679-1064(1189)
161 PF05843 Suf: Suppressor of fo 97.3 0.0081 1.8E-07 57.5 14.5 130 164-298 3-136 (280)
162 PF05843 Suf: Suppressor of fo 97.3 0.0063 1.4E-07 58.3 13.6 130 198-333 2-136 (280)
163 PLN03088 SGT1, suppressor of 97.2 0.01 2.2E-07 59.1 14.8 85 316-402 14-98 (356)
164 PRK10866 outer membrane biogen 97.1 0.12 2.6E-06 48.2 20.4 177 240-436 38-239 (243)
165 PLN03088 SGT1, suppressor of 97.1 0.013 2.8E-07 58.3 14.9 89 101-191 11-99 (356)
166 PF14559 TPR_19: Tetratricopep 97.1 0.0017 3.7E-08 46.9 6.5 62 35-98 1-64 (68)
167 PRK02603 photosystem I assembl 97.1 0.028 6.1E-07 49.5 15.3 82 272-354 38-121 (172)
168 PRK10153 DNA-binding transcrip 97.1 0.036 7.9E-07 57.7 18.0 62 374-437 420-481 (517)
169 PRK15363 pathogenicity island 97.1 0.021 4.5E-07 48.1 13.0 95 94-190 37-131 (157)
170 PRK10866 outer membrane biogen 97.0 0.13 2.8E-06 48.0 19.4 58 344-401 180-239 (243)
171 KOG2796 Uncharacterized conser 97.0 0.26 5.6E-06 44.9 20.9 144 270-416 178-326 (366)
172 PF12895 Apc3: Anaphase-promot 97.0 0.0015 3.2E-08 49.7 5.3 17 346-362 32-48 (84)
173 PRK02603 photosystem I assembl 97.0 0.037 8.1E-07 48.7 14.9 92 91-183 34-127 (172)
174 CHL00033 ycf3 photosystem I as 96.9 0.03 6.5E-07 49.1 13.9 80 270-350 36-117 (168)
175 KOG2041 WD40 repeat protein [G 96.9 0.65 1.4E-05 48.2 27.0 315 74-432 747-1080(1189)
176 PF12895 Apc3: Anaphase-promot 96.9 0.004 8.6E-08 47.3 7.0 80 38-117 2-83 (84)
177 CHL00033 ycf3 photosystem I as 96.9 0.021 4.5E-07 50.1 12.5 63 200-262 38-100 (168)
178 PRK10153 DNA-binding transcrip 96.9 0.078 1.7E-06 55.3 18.1 146 263-413 331-490 (517)
179 PF14559 TPR_19: Tetratricopep 96.8 0.0052 1.1E-07 44.4 6.5 50 105-155 4-53 (68)
180 PF12688 TPR_5: Tetratrico pep 96.8 0.084 1.8E-06 42.8 13.9 55 278-332 10-66 (120)
181 KOG0553 TPR repeat-containing 96.8 0.016 3.5E-07 53.7 10.6 96 73-171 93-191 (304)
182 PF14938 SNAP: Soluble NSF att 96.7 0.12 2.6E-06 49.7 17.4 209 28-261 38-264 (282)
183 PF12688 TPR_5: Tetratrico pep 96.7 0.078 1.7E-06 43.0 13.3 56 170-225 9-66 (120)
184 KOG0550 Molecular chaperone (D 96.7 0.59 1.3E-05 45.6 20.6 283 102-438 59-350 (486)
185 KOG0553 TPR repeat-containing 96.6 0.028 6E-07 52.1 11.3 94 316-414 93-187 (304)
186 PF14938 SNAP: Soluble NSF att 96.6 0.21 4.6E-06 48.0 18.3 111 241-367 101-224 (282)
187 PF13432 TPR_16: Tetratricopep 96.5 0.013 2.8E-07 41.7 6.8 54 348-402 6-59 (65)
188 COG4235 Cytochrome c biogenesi 96.5 0.083 1.8E-06 49.3 13.3 100 124-225 153-255 (287)
189 KOG1538 Uncharacterized conser 96.4 0.33 7.1E-06 49.8 18.0 42 41-86 616-657 (1081)
190 PF13432 TPR_16: Tetratricopep 96.4 0.015 3.3E-07 41.4 6.5 50 138-188 8-57 (65)
191 COG4235 Cytochrome c biogenesi 96.4 0.19 4.2E-06 46.9 15.1 100 336-438 153-256 (287)
192 PF13414 TPR_11: TPR repeat; P 96.4 0.018 3.9E-07 41.6 6.9 60 236-296 5-65 (69)
193 PF04840 Vps16_C: Vps16, C-ter 96.3 1.1 2.5E-05 43.5 29.2 108 271-398 179-286 (319)
194 PF13525 YfiO: Outer membrane 96.3 0.64 1.4E-05 42.1 18.0 166 242-428 13-197 (203)
195 PF13414 TPR_11: TPR repeat; P 96.3 0.022 4.8E-07 41.1 7.0 62 92-154 3-65 (69)
196 KOG2280 Vacuolar assembly/sort 96.2 2.1 4.5E-05 45.2 25.8 80 276-365 691-770 (829)
197 PF13525 YfiO: Outer membrane 96.2 0.86 1.9E-05 41.3 18.5 46 345-392 147-196 (203)
198 PRK10803 tol-pal system protei 96.2 0.091 2E-06 49.5 12.2 60 239-298 185-246 (263)
199 KOG1130 Predicted G-alpha GTPa 96.1 0.11 2.4E-06 50.2 12.4 265 101-366 26-342 (639)
200 KOG1538 Uncharacterized conser 96.1 0.15 3.3E-06 52.1 13.8 215 124-367 553-801 (1081)
201 KOG1130 Predicted G-alpha GTPa 96.0 0.11 2.3E-06 50.3 11.9 266 135-402 25-343 (639)
202 PF03704 BTAD: Bacterial trans 96.0 0.046 9.9E-07 46.6 8.6 69 130-199 65-138 (146)
203 PF12921 ATP13: Mitochondrial 96.0 0.12 2.7E-06 42.3 10.6 50 193-243 48-97 (126)
204 PF03704 BTAD: Bacterial trans 95.9 0.39 8.4E-06 40.8 14.3 57 273-330 66-122 (146)
205 PRK15331 chaperone protein Sic 95.9 0.14 2.9E-06 43.6 10.7 84 35-120 47-133 (165)
206 PRK10803 tol-pal system protei 95.9 0.15 3.3E-06 48.0 12.2 89 173-263 154-246 (263)
207 PF12921 ATP13: Mitochondrial 95.8 0.21 4.5E-06 41.0 11.1 51 229-279 47-98 (126)
208 PF13371 TPR_9: Tetratricopept 95.7 0.076 1.6E-06 38.8 7.7 51 138-189 6-56 (73)
209 PF13371 TPR_9: Tetratricopept 95.6 0.085 1.8E-06 38.5 7.9 57 100-157 3-59 (73)
210 COG4700 Uncharacterized protei 95.6 1.3 2.9E-05 38.2 19.1 101 160-262 87-188 (251)
211 COG4700 Uncharacterized protei 95.6 1.4 3E-05 38.1 18.5 129 301-433 86-217 (251)
212 COG4649 Uncharacterized protei 95.4 1.1 2.5E-05 38.1 14.2 123 34-156 67-196 (221)
213 KOG3941 Intermediate in Toll s 95.2 0.16 3.5E-06 46.6 9.4 123 83-224 56-186 (406)
214 PF04053 Coatomer_WDAD: Coatom 95.1 1.1 2.3E-05 45.8 16.0 168 23-223 259-428 (443)
215 COG3118 Thioredoxin domain-con 95.0 3.3 7.1E-05 38.9 18.0 141 138-283 145-286 (304)
216 KOG0550 Molecular chaperone (D 94.9 4.3 9.4E-05 39.9 24.0 256 33-298 57-350 (486)
217 COG3898 Uncharacterized membra 94.8 4.3 9.4E-05 39.5 28.6 296 130-442 85-396 (531)
218 PF04840 Vps16_C: Vps16, C-ter 94.7 4.7 0.0001 39.3 29.8 109 236-364 179-287 (319)
219 PF04053 Coatomer_WDAD: Coatom 94.6 1.5 3.2E-05 44.9 15.7 131 129-294 297-427 (443)
220 KOG2114 Vacuolar assembly/sort 94.6 7.7 0.00017 41.8 20.6 117 32-154 341-458 (933)
221 PF13424 TPR_12: Tetratricopep 94.5 0.13 2.7E-06 38.2 6.1 61 376-436 7-73 (78)
222 smart00299 CLH Clathrin heavy 94.5 2.1 4.6E-05 35.9 14.4 125 238-385 11-136 (140)
223 PF13281 DUF4071: Domain of un 94.5 5.4 0.00012 39.4 20.1 28 271-298 307-334 (374)
224 KOG3941 Intermediate in Toll s 94.5 0.32 6.9E-06 44.8 9.3 118 124-262 64-187 (406)
225 PF13424 TPR_12: Tetratricopep 94.5 0.12 2.6E-06 38.4 5.8 62 340-401 6-73 (78)
226 PRK15331 chaperone protein Sic 94.1 3.3 7.2E-05 35.4 15.3 89 277-367 45-133 (165)
227 PF07079 DUF1347: Protein of u 94.1 7.1 0.00015 39.0 40.2 420 37-468 18-521 (549)
228 KOG2796 Uncharacterized conser 94.0 4.9 0.00011 36.9 25.4 132 164-298 179-315 (366)
229 PLN03098 LPA1 LOW PSII ACCUMUL 94.0 1.3 2.7E-05 44.5 13.1 36 20-55 70-105 (453)
230 smart00299 CLH Clathrin heavy 94.0 3.3 7.1E-05 34.8 15.5 41 133-174 13-53 (140)
231 COG3118 Thioredoxin domain-con 94.0 5.6 0.00012 37.4 17.5 143 171-319 143-287 (304)
232 PF13281 DUF4071: Domain of un 93.8 7.5 0.00016 38.5 19.8 32 407-438 303-334 (374)
233 PLN03098 LPA1 LOW PSII ACCUMUL 93.8 2 4.3E-05 43.1 14.1 64 234-298 75-141 (453)
234 PF10300 DUF3808: Protein of u 93.7 3.7 8E-05 42.6 16.7 179 145-332 175-375 (468)
235 PF10300 DUF3808: Protein of u 93.6 5.1 0.00011 41.6 17.5 163 271-436 190-374 (468)
236 PF09205 DUF1955: Domain of un 93.6 3.4 7.4E-05 33.6 13.7 62 307-369 89-150 (161)
237 PF09205 DUF1955: Domain of un 93.2 3.9 8.4E-05 33.3 12.9 139 281-441 14-152 (161)
238 KOG0543 FKBP-type peptidyl-pro 93.2 1.5 3.3E-05 42.8 11.9 133 33-190 216-354 (397)
239 PRK11906 transcriptional regul 93.1 9.3 0.0002 38.6 17.4 143 75-222 272-432 (458)
240 KOG2610 Uncharacterized conser 92.8 2.9 6.4E-05 39.7 12.6 116 174-294 115-234 (491)
241 COG3898 Uncharacterized membra 92.7 11 0.00023 37.0 32.2 286 74-378 97-399 (531)
242 PF13170 DUF4003: Protein of u 92.6 10 0.00022 36.5 17.3 131 178-310 78-223 (297)
243 PF13512 TPR_18: Tetratricopep 92.6 3.9 8.5E-05 34.0 11.9 77 99-175 17-95 (142)
244 KOG0543 FKBP-type peptidyl-pro 92.5 2.8 6.1E-05 41.1 12.6 122 243-366 217-353 (397)
245 COG4105 ComL DNA uptake lipopr 92.5 8.8 0.00019 35.4 21.0 54 209-262 46-99 (254)
246 COG3629 DnrI DNA-binding trans 92.4 1.7 3.7E-05 40.9 10.8 77 129-206 155-236 (280)
247 KOG2610 Uncharacterized conser 92.4 4.1 8.9E-05 38.8 13.0 117 139-260 115-235 (491)
248 KOG1941 Acetylcholine receptor 92.0 12 0.00025 36.3 15.6 166 199-365 85-272 (518)
249 KOG4555 TPR repeat-containing 91.8 3.6 7.9E-05 33.4 10.3 90 348-439 52-145 (175)
250 COG1729 Uncharacterized protei 91.8 2.7 5.8E-05 39.0 11.1 60 203-262 184-243 (262)
251 COG5107 RNA14 Pre-mRNA 3'-end 91.7 15 0.00033 36.6 36.8 80 58-139 39-121 (660)
252 PF13512 TPR_18: Tetratricopep 91.6 6.9 0.00015 32.6 12.2 56 208-263 21-76 (142)
253 KOG1920 IkappaB kinase complex 91.5 29 0.00063 39.3 21.3 112 302-433 933-1050(1265)
254 PF13428 TPR_14: Tetratricopep 91.4 0.83 1.8E-05 29.3 5.6 24 240-263 7-30 (44)
255 COG3629 DnrI DNA-binding trans 91.0 2.9 6.3E-05 39.4 10.8 77 236-313 155-236 (280)
256 COG1729 Uncharacterized protei 91.0 4 8.6E-05 37.9 11.4 62 272-333 181-244 (262)
257 PRK11906 transcriptional regul 90.9 20 0.00043 36.4 17.9 17 37-53 46-62 (458)
258 PF04184 ST7: ST7 protein; In 90.8 21 0.00045 36.4 17.2 60 202-262 264-323 (539)
259 KOG1941 Acetylcholine receptor 90.7 9.3 0.0002 37.0 13.6 166 271-436 85-273 (518)
260 COG5107 RNA14 Pre-mRNA 3'-end 90.6 20 0.00043 35.9 33.6 146 304-455 397-546 (660)
261 PF08631 SPO22: Meiosis protei 90.5 17 0.00036 34.8 25.5 62 199-263 86-150 (278)
262 PF09613 HrpB1_HrpK: Bacterial 90.4 8.7 0.00019 32.7 12.0 50 37-88 22-71 (160)
263 PF13428 TPR_14: Tetratricopep 90.1 1.2 2.6E-05 28.5 5.4 27 95-121 4-30 (44)
264 PF07035 Mic1: Colon cancer-as 90.0 12 0.00026 32.4 15.6 130 290-435 15-146 (167)
265 PF10602 RPN7: 26S proteasome 89.9 7.4 0.00016 34.3 11.9 96 129-224 38-140 (177)
266 KOG4555 TPR repeat-containing 89.8 9.6 0.00021 31.0 11.8 90 102-192 53-145 (175)
267 KOG2114 Vacuolar assembly/sort 89.6 35 0.00075 37.1 19.3 138 33-188 376-516 (933)
268 KOG1920 IkappaB kinase complex 89.6 42 0.00092 38.1 20.6 113 165-297 911-1027(1265)
269 COG0457 NrfG FOG: TPR repeat [ 89.4 16 0.00035 33.0 30.2 200 235-437 60-264 (291)
270 COG4785 NlpI Lipoprotein NlpI, 89.0 17 0.00036 32.7 17.0 179 247-438 78-266 (297)
271 PF04184 ST7: ST7 protein; In 89.0 29 0.00063 35.4 17.2 60 308-367 263-323 (539)
272 KOG0276 Vesicle coat complex C 88.8 4 8.6E-05 42.1 10.2 159 27-222 588-746 (794)
273 PF13170 DUF4003: Protein of u 88.5 24 0.00053 34.0 21.1 129 286-416 79-224 (297)
274 KOG2066 Vacuolar assembly/sort 88.2 42 0.0009 36.2 28.7 151 31-189 362-532 (846)
275 KOG1585 Protein required for f 87.6 23 0.00049 32.5 17.5 207 94-327 33-250 (308)
276 cd00923 Cyt_c_Oxidase_Va Cytoc 87.5 6.5 0.00014 30.0 8.2 63 390-454 23-86 (103)
277 KOG2280 Vacuolar assembly/sort 87.5 45 0.00097 35.8 35.5 302 120-436 425-771 (829)
278 PRK09687 putative lyase; Provi 86.7 31 0.00066 33.1 30.1 238 85-349 30-277 (280)
279 PF13176 TPR_7: Tetratricopept 86.5 1.6 3.5E-05 26.4 4.0 23 165-187 2-24 (36)
280 PF09613 HrpB1_HrpK: Bacterial 86.4 20 0.00043 30.6 13.0 18 138-155 55-72 (160)
281 PF07035 Mic1: Colon cancer-as 86.0 22 0.00048 30.8 15.2 134 113-262 15-148 (167)
282 PF10602 RPN7: 26S proteasome 85.7 9.8 0.00021 33.5 10.1 14 282-295 126-139 (177)
283 PF07575 Nucleopor_Nup85: Nup8 85.6 56 0.0012 35.1 17.7 147 289-453 390-539 (566)
284 PF13176 TPR_7: Tetratricopept 85.6 1.8 3.8E-05 26.3 3.8 23 377-399 2-24 (36)
285 KOG1586 Protein required for f 85.2 29 0.00062 31.7 12.3 17 317-333 167-183 (288)
286 PF13431 TPR_17: Tetratricopep 84.8 1.6 3.5E-05 26.1 3.3 24 266-289 10-33 (34)
287 COG4105 ComL DNA uptake lipopr 84.8 33 0.00072 31.8 20.0 180 234-437 35-232 (254)
288 KOG4570 Uncharacterized conser 84.1 16 0.00034 34.8 10.7 99 303-403 63-164 (418)
289 COG0457 NrfG FOG: TPR repeat [ 84.0 32 0.00068 30.9 30.3 202 198-403 60-265 (291)
290 PF02284 COX5A: Cytochrome c o 83.2 20 0.00042 27.9 11.2 61 392-454 28-89 (108)
291 PF00515 TPR_1: Tetratricopept 83.1 2.7 5.9E-05 24.8 3.9 26 377-402 4-29 (34)
292 TIGR02561 HrpB1_HrpK type III 82.8 28 0.0006 29.3 10.9 51 37-89 22-72 (153)
293 KOG4570 Uncharacterized conser 82.5 20 0.00043 34.1 10.7 105 192-298 59-164 (418)
294 KOG1550 Extracellular protein 82.2 75 0.0016 34.0 24.9 183 108-300 228-428 (552)
295 PF08631 SPO22: Meiosis protei 81.7 50 0.0011 31.6 27.9 160 103-268 4-191 (278)
296 PF13929 mRNA_stabil: mRNA sta 81.6 49 0.0011 31.4 15.5 116 107-222 143-263 (292)
297 PF11207 DUF2989: Protein of u 81.3 18 0.00039 32.2 9.6 21 268-288 177-197 (203)
298 KOG1464 COP9 signalosome, subu 81.1 47 0.001 30.9 16.4 153 37-189 39-218 (440)
299 PF13431 TPR_17: Tetratricopep 81.1 2.3 5E-05 25.4 3.0 19 127-145 13-31 (34)
300 PF00515 TPR_1: Tetratricopept 81.0 4.3 9.2E-05 23.9 4.2 28 410-437 2-29 (34)
301 PF04097 Nic96: Nup93/Nic96; 80.9 89 0.0019 33.9 17.2 38 552-592 522-559 (613)
302 COG2976 Uncharacterized protei 80.6 27 0.00058 30.9 10.2 127 28-157 53-189 (207)
303 TIGR02561 HrpB1_HrpK type III 80.2 34 0.00075 28.8 11.3 49 104-156 22-73 (153)
304 KOG0276 Vesicle coat complex C 80.1 25 0.00055 36.6 11.4 132 129-295 616-747 (794)
305 COG4649 Uncharacterized protei 79.1 42 0.00091 29.1 15.7 129 315-443 69-201 (221)
306 KOG1550 Extracellular protein 78.7 98 0.0021 33.1 25.2 178 143-334 228-427 (552)
307 PF07719 TPR_2: Tetratricopept 78.5 4.8 0.0001 23.5 3.9 23 379-401 6-28 (34)
308 cd00923 Cyt_c_Oxidase_Va Cytoc 78.1 18 0.00039 27.8 7.3 45 287-331 25-69 (103)
309 KOG1585 Protein required for f 77.7 59 0.0013 30.0 18.2 211 20-257 26-250 (308)
310 TIGR02508 type_III_yscG type I 77.4 31 0.00067 26.7 9.8 80 39-122 19-98 (115)
311 PF13374 TPR_10: Tetratricopep 77.1 5.6 0.00012 24.6 4.2 25 376-400 4-28 (42)
312 PRK09687 putative lyase; Provi 77.0 71 0.0015 30.6 30.7 137 268-420 141-278 (280)
313 TIGR02508 type_III_yscG type I 76.6 33 0.00072 26.6 8.5 58 136-200 48-105 (115)
314 PF13374 TPR_10: Tetratricopep 76.3 6.6 0.00014 24.2 4.3 26 164-189 4-29 (42)
315 PF07719 TPR_2: Tetratricopept 74.6 8.4 0.00018 22.5 4.2 28 410-437 2-29 (34)
316 PF00637 Clathrin: Region in C 74.5 1.1 2.3E-05 38.0 0.2 84 345-435 13-96 (143)
317 COG4785 NlpI Lipoprotein NlpI, 73.8 69 0.0015 28.9 15.8 66 90-156 97-162 (297)
318 PF00637 Clathrin: Region in C 72.7 1.6 3.5E-05 36.8 0.9 52 135-186 15-66 (143)
319 PF02284 COX5A: Cytochrome c o 72.5 22 0.00047 27.6 6.6 45 288-332 29-73 (108)
320 COG3947 Response regulator con 71.0 97 0.0021 29.4 15.6 78 107-186 102-190 (361)
321 COG4455 ImpE Protein of avirul 70.4 31 0.00068 31.0 8.1 58 96-154 5-62 (273)
322 PRK11619 lytic murein transgly 69.6 1.8E+02 0.0038 31.8 38.3 50 381-433 414-463 (644)
323 PF13762 MNE1: Mitochondrial s 68.0 73 0.0016 26.8 10.8 80 377-456 42-127 (145)
324 PF08311 Mad3_BUB1_I: Mad3/BUB 68.0 31 0.00068 28.3 7.4 59 26-86 66-124 (126)
325 COG4455 ImpE Protein of avirul 67.9 40 0.00086 30.4 8.2 20 239-258 40-59 (273)
326 KOG4648 Uncharacterized conser 67.7 32 0.0007 33.1 8.1 88 71-161 107-197 (536)
327 COG5159 RPN6 26S proteasome re 67.5 1.1E+02 0.0024 28.9 11.3 128 275-402 9-153 (421)
328 PF07163 Pex26: Pex26 protein; 67.3 52 0.0011 31.0 9.2 87 204-292 90-181 (309)
329 PF13762 MNE1: Mitochondrial s 67.0 76 0.0017 26.7 10.2 81 342-422 42-128 (145)
330 PF13181 TPR_8: Tetratricopept 66.8 9.2 0.0002 22.3 3.2 23 378-400 5-27 (34)
331 KOG4077 Cytochrome c oxidase, 66.2 42 0.00091 27.2 7.3 61 392-453 67-127 (149)
332 COG2976 Uncharacterized protei 66.0 98 0.0021 27.5 12.8 88 205-299 97-189 (207)
333 KOG1258 mRNA processing protei 65.1 1.9E+02 0.0041 30.5 39.9 128 27-156 43-180 (577)
334 KOG2471 TPR repeat-containing 64.9 1.7E+02 0.0037 30.1 12.7 105 349-455 250-380 (696)
335 PRK15180 Vi polysaccharide bio 63.5 80 0.0017 32.1 10.2 147 194-345 286-432 (831)
336 COG3947 Response regulator con 63.3 1.4E+02 0.003 28.4 15.8 71 376-447 281-356 (361)
337 KOG4648 Uncharacterized conser 62.3 24 0.00053 33.9 6.3 49 312-361 105-153 (536)
338 TIGR03504 FimV_Cterm FimV C-te 62.2 19 0.00041 23.1 3.9 23 415-437 5-27 (44)
339 PF07721 TPR_4: Tetratricopept 62.1 13 0.00028 20.4 2.9 16 346-361 8-23 (26)
340 PF13174 TPR_6: Tetratricopept 62.0 13 0.00029 21.3 3.2 17 173-189 11-27 (33)
341 PF10345 Cohesin_load: Cohesin 61.7 2.4E+02 0.0053 30.6 37.0 190 28-223 29-251 (608)
342 PHA02875 ankyrin repeat protei 61.5 1.9E+02 0.0042 29.4 13.9 12 171-182 74-85 (413)
343 PF07079 DUF1347: Protein of u 61.5 1.9E+02 0.0042 29.4 45.2 396 39-451 59-532 (549)
344 KOG2297 Predicted translation 61.2 1.6E+02 0.0034 28.3 19.6 72 278-359 264-341 (412)
345 PF13181 TPR_8: Tetratricopept 61.0 25 0.00055 20.4 4.4 27 271-297 3-29 (34)
346 PF07163 Pex26: Pex26 protein; 60.6 1.1E+02 0.0024 28.9 10.0 87 311-397 90-181 (309)
347 PF02259 FAT: FAT domain; Int 60.4 1.8E+02 0.0039 28.7 23.4 27 271-297 148-174 (352)
348 TIGR03504 FimV_Cterm FimV C-te 58.9 23 0.00049 22.7 3.9 20 170-189 7-26 (44)
349 cd08819 CARD_MDA5_2 Caspase ac 56.2 85 0.0018 23.7 7.0 14 283-296 50-63 (88)
350 PF13929 mRNA_stabil: mRNA sta 56.2 1.9E+02 0.0041 27.6 22.3 61 231-291 199-260 (292)
351 PRK11619 lytic murein transgly 55.9 3.1E+02 0.0067 30.0 31.2 254 141-412 255-514 (644)
352 KOG4234 TPR repeat-containing 55.7 1.4E+02 0.003 26.8 9.2 21 278-298 177-197 (271)
353 PF09477 Type_III_YscG: Bacter 53.7 1.1E+02 0.0024 24.2 9.3 80 106-192 20-99 (116)
354 PF14853 Fis1_TPR_C: Fis1 C-te 52.4 54 0.0012 22.0 5.1 36 415-452 7-42 (53)
355 PF11207 DUF2989: Protein of u 51.7 1.8E+02 0.0039 26.1 15.0 73 144-217 123-198 (203)
356 KOG2063 Vacuolar assembly/sort 51.3 4.1E+02 0.0089 30.1 17.8 111 129-247 506-639 (877)
357 PF11663 Toxin_YhaV: Toxin wit 51.2 19 0.00041 29.5 3.2 31 139-171 107-137 (140)
358 PF06552 TOM20_plant: Plant sp 50.1 1.8E+02 0.0039 25.6 9.3 40 178-225 96-135 (186)
359 PF06552 TOM20_plant: Plant sp 50.0 1.8E+02 0.0039 25.6 11.3 28 144-173 97-124 (186)
360 PF11848 DUF3368: Domain of un 48.6 67 0.0014 21.0 5.0 29 387-415 15-43 (48)
361 KOG4234 TPR repeat-containing 48.6 2E+02 0.0044 25.8 10.0 55 347-403 142-197 (271)
362 cd08819 CARD_MDA5_2 Caspase ac 48.2 95 0.0021 23.4 6.2 32 75-107 50-81 (88)
363 PF11848 DUF3368: Domain of un 47.5 75 0.0016 20.8 5.1 30 174-203 14-43 (48)
364 KOG4077 Cytochrome c oxidase, 47.3 1.4E+02 0.003 24.4 7.3 47 287-333 67-113 (149)
365 KOG3677 RNA polymerase I-assoc 46.5 3.2E+02 0.007 27.5 11.5 63 199-261 237-299 (525)
366 PF11663 Toxin_YhaV: Toxin wit 46.2 25 0.00054 28.9 3.2 30 387-418 108-137 (140)
367 PF04097 Nic96: Nup93/Nic96; 45.9 4.3E+02 0.0093 28.8 18.6 155 276-436 265-441 (613)
368 KOG0403 Neoplastic transformat 45.5 3.5E+02 0.0075 27.6 16.6 77 307-388 512-588 (645)
369 PF11846 DUF3366: Domain of un 45.5 1.1E+02 0.0024 27.2 7.8 33 405-437 140-172 (193)
370 PF10366 Vps39_1: Vacuolar sor 45.4 1.4E+02 0.0031 23.6 7.4 27 271-297 41-67 (108)
371 PF09477 Type_III_YscG: Bacter 45.1 1.5E+02 0.0033 23.4 9.4 81 38-122 19-99 (116)
372 PF04190 DUF410: Protein of un 44.7 2.8E+02 0.006 26.2 16.2 25 126-150 89-113 (260)
373 KOG2297 Predicted translation 44.4 3E+02 0.0065 26.5 18.9 67 320-396 271-343 (412)
374 KOG1258 mRNA processing protei 44.1 4.2E+02 0.0091 28.1 33.9 364 37-424 91-490 (577)
375 KOG2034 Vacuolar sorting prote 44.0 5.1E+02 0.011 29.0 28.3 79 27-115 360-438 (911)
376 smart00028 TPR Tetratricopepti 43.6 48 0.001 17.9 3.7 22 167-188 6-27 (34)
377 KOG1464 COP9 signalosome, subu 43.1 2.9E+02 0.0063 26.0 18.8 50 175-224 40-92 (440)
378 KOG2471 TPR repeat-containing 42.9 3.6E+02 0.0077 27.9 11.0 105 315-421 251-381 (696)
379 PF14689 SPOB_a: Sensor_kinase 42.5 66 0.0014 22.4 4.5 22 167-188 28-49 (62)
380 smart00777 Mad3_BUB1_I Mad3/BU 42.5 88 0.0019 25.6 5.9 22 95-116 102-123 (125)
381 PF09868 DUF2095: Uncharacteri 42.3 1E+02 0.0022 24.5 5.7 36 133-169 67-102 (128)
382 PF10579 Rapsyn_N: Rapsyn N-te 41.8 86 0.0019 23.2 5.0 44 281-324 18-63 (80)
383 PF14561 TPR_20: Tetratricopep 41.8 1.2E+02 0.0027 23.0 6.3 35 21-55 18-52 (90)
384 PF10579 Rapsyn_N: Rapsyn N-te 41.4 65 0.0014 23.7 4.4 12 240-251 49-60 (80)
385 KOG0890 Protein kinase of the 41.3 8.6E+02 0.019 30.9 24.2 62 304-368 1670-1731(2382)
386 KOG4507 Uncharacterized conser 41.2 2E+02 0.0043 30.3 9.2 132 251-385 590-721 (886)
387 COG5108 RPO41 Mitochondrial DN 40.5 2.5E+02 0.0053 30.2 9.8 75 309-386 33-115 (1117)
388 PF08424 NRDE-2: NRDE-2, neces 40.1 3.7E+02 0.008 26.3 17.0 60 145-206 49-108 (321)
389 KOG0686 COP9 signalosome, subu 39.5 4.1E+02 0.009 26.7 14.3 170 270-467 151-329 (466)
390 PRK10564 maltose regulon perip 37.6 75 0.0016 30.4 5.4 37 94-130 259-295 (303)
391 PF14853 Fis1_TPR_C: Fis1 C-te 37.6 1.1E+02 0.0024 20.6 4.8 33 380-414 7-39 (53)
392 COG0735 Fur Fe2+/Zn2+ uptake r 37.1 1.8E+02 0.0039 24.6 7.2 59 259-318 11-69 (145)
393 COG1747 Uncharacterized N-term 36.7 5.2E+02 0.011 27.0 25.2 180 90-278 64-248 (711)
394 PF02847 MA3: MA3 domain; Int 36.7 2.1E+02 0.0046 22.5 8.6 22 379-400 7-28 (113)
395 COG1747 Uncharacterized N-term 35.8 5.3E+02 0.012 26.9 25.7 180 159-348 63-248 (711)
396 cd00280 TRFH Telomeric Repeat 35.5 2.6E+02 0.0057 24.7 7.8 68 320-390 85-159 (200)
397 PF10255 Paf67: RNA polymerase 35.2 4.4E+02 0.0095 26.8 10.6 63 128-190 123-192 (404)
398 KOG4507 Uncharacterized conser 34.8 1.5E+02 0.0031 31.3 7.2 57 133-190 648-704 (886)
399 PRK10564 maltose regulon perip 34.3 73 0.0016 30.5 4.8 36 377-412 260-295 (303)
400 COG5108 RPO41 Mitochondrial DN 33.9 3.4E+02 0.0074 29.2 9.7 91 167-262 33-131 (1117)
401 PF14689 SPOB_a: Sensor_kinase 33.8 71 0.0015 22.3 3.6 31 23-53 21-51 (62)
402 cd08332 CARD_CASP2 Caspase act 32.9 1.9E+02 0.0041 22.0 6.0 65 35-107 16-80 (90)
403 KOG3807 Predicted membrane pro 32.5 4.8E+02 0.01 25.4 11.8 55 168-224 281-338 (556)
404 PF11846 DUF3366: Domain of un 32.4 2.1E+02 0.0046 25.4 7.5 30 372-401 142-171 (193)
405 KOG2396 HAT (Half-A-TPR) repea 32.2 6E+02 0.013 26.5 36.7 243 180-437 300-558 (568)
406 PF02259 FAT: FAT domain; Int 32.2 4.9E+02 0.011 25.5 24.1 67 196-262 145-212 (352)
407 COG4003 Uncharacterized protei 32.2 1.8E+02 0.004 21.4 5.3 25 133-157 37-61 (98)
408 KOG2063 Vacuolar assembly/sort 31.8 8.1E+02 0.018 27.9 25.2 55 32-88 314-373 (877)
409 PF12862 Apc5: Anaphase-promot 30.5 2.5E+02 0.0053 21.4 6.8 53 385-437 9-69 (94)
410 COG2909 MalT ATP-dependent tra 30.0 8.4E+02 0.018 27.5 25.5 194 245-438 426-647 (894)
411 PRK09857 putative transposase; 29.9 4.5E+02 0.0097 25.4 9.5 66 130-196 209-274 (292)
412 PF12926 MOZART2: Mitotic-spin 29.7 2.5E+02 0.0054 21.2 8.0 43 113-155 29-71 (88)
413 PF04190 DUF410: Protein of un 29.6 4.9E+02 0.011 24.6 10.5 85 31-115 16-113 (260)
414 COG2178 Predicted RNA-binding 29.6 4.1E+02 0.0089 23.7 8.5 14 318-331 135-148 (204)
415 smart00386 HAT HAT (Half-A-TPR 29.6 1.1E+02 0.0023 17.0 4.0 17 39-55 1-17 (33)
416 PHA02875 ankyrin repeat protei 29.2 6.2E+02 0.013 25.7 16.3 75 138-220 10-88 (413)
417 cd08326 CARD_CASP9 Caspase act 28.9 2.5E+02 0.0055 21.0 6.6 61 45-110 19-79 (84)
418 PF08311 Mad3_BUB1_I: Mad3/BUB 28.8 3.3E+02 0.007 22.3 9.9 43 110-152 81-124 (126)
419 COG2909 MalT ATP-dependent tra 28.7 8.9E+02 0.019 27.3 27.2 86 139-224 427-524 (894)
420 PF09454 Vps23_core: Vps23 cor 28.6 1.5E+02 0.0034 20.9 4.5 28 307-334 11-38 (65)
421 PF09670 Cas_Cas02710: CRISPR- 28.3 6.3E+02 0.014 25.5 12.3 53 280-333 142-198 (379)
422 PF09454 Vps23_core: Vps23 cor 28.3 1.1E+02 0.0024 21.6 3.8 29 129-157 10-38 (65)
423 PF10366 Vps39_1: Vacuolar sor 28.0 3.1E+02 0.0067 21.7 7.6 26 307-332 42-67 (108)
424 PF12862 Apc5: Anaphase-promot 27.7 2.8E+02 0.006 21.1 6.6 21 134-154 48-68 (94)
425 COG5187 RPN7 26S proteasome re 27.6 5.5E+02 0.012 24.6 12.1 146 326-473 60-224 (412)
426 PRK10941 hypothetical protein; 26.5 5.7E+02 0.012 24.3 10.7 56 168-224 187-242 (269)
427 PF08424 NRDE-2: NRDE-2, neces 26.1 6.3E+02 0.014 24.7 18.7 62 251-314 48-109 (321)
428 PF07575 Nucleopor_Nup85: Nup8 26.0 2.8E+02 0.0061 29.8 8.2 43 112-154 390-432 (566)
429 PF09868 DUF2095: Uncharacteri 25.7 2.7E+02 0.0059 22.2 5.7 25 310-334 67-91 (128)
430 PF11123 DNA_Packaging_2: DNA 25.6 2.1E+02 0.0045 20.7 4.6 33 249-282 12-44 (82)
431 KOG0376 Serine-threonine phosp 25.3 1.3E+02 0.0029 30.6 5.1 102 32-137 11-115 (476)
432 PF11817 Foie-gras_1: Foie gra 25.2 3.5E+02 0.0075 25.3 7.8 23 29-51 14-36 (247)
433 KOG0991 Replication factor C, 25.1 5.6E+02 0.012 23.8 13.3 91 244-337 169-271 (333)
434 PF13838 Clathrin_H_link: Clat 24.5 2.2E+02 0.0047 20.2 4.6 33 21-53 2-34 (66)
435 KOG1166 Mitotic checkpoint ser 24.2 2.6E+02 0.0057 32.0 7.6 69 20-89 74-142 (974)
436 PRK11639 zinc uptake transcrip 23.5 4.3E+02 0.0092 23.0 7.5 59 119-178 18-76 (169)
437 PF09670 Cas_Cas02710: CRISPR- 23.4 7.7E+02 0.017 24.8 12.3 55 136-191 140-198 (379)
438 PRK11639 zinc uptake transcrip 23.4 4.2E+02 0.009 23.0 7.4 36 319-354 40-75 (169)
439 PRK12356 glutaminase; Reviewed 23.1 2.7E+02 0.0059 27.1 6.5 54 387-442 167-222 (319)
440 KOG0890 Protein kinase of the 23.0 1.7E+03 0.037 28.6 25.9 311 67-403 1389-1731(2382)
441 KOG0686 COP9 signalosome, subu 22.7 8.1E+02 0.018 24.8 15.2 63 128-190 151-215 (466)
442 PF10255 Paf67: RNA polymerase 22.6 8.3E+02 0.018 24.9 12.4 64 198-261 123-191 (404)
443 KOG3636 Uncharacterized conser 22.4 8.4E+02 0.018 24.9 14.7 202 112-315 39-271 (669)
444 PF11817 Foie-gras_1: Foie gra 22.4 4.5E+02 0.0098 24.5 8.0 20 66-85 15-34 (247)
445 PF11838 ERAP1_C: ERAP1-like C 22.4 7.1E+02 0.015 24.0 19.9 190 99-294 45-262 (324)
446 COG0735 Fur Fe2+/Zn2+ uptake r 22.3 4.8E+02 0.01 22.0 7.6 61 116-177 10-70 (145)
447 KOG4567 GTPase-activating prot 22.1 5.4E+02 0.012 24.9 7.9 71 147-222 263-343 (370)
448 TIGR03362 VI_chp_7 type VI sec 22.1 7.3E+02 0.016 24.1 12.7 47 27-75 101-147 (301)
449 KOG2066 Vacuolar assembly/sort 21.9 1.1E+03 0.024 26.1 23.2 100 101-209 365-467 (846)
450 PF02184 HAT: HAT (Half-A-TPR) 21.2 1.4E+02 0.0031 17.6 2.6 23 424-448 2-24 (32)
451 KOG0403 Neoplastic transformat 21.0 9.2E+02 0.02 24.8 18.0 75 377-456 512-586 (645)
452 cd07153 Fur_like Ferric uptake 21.0 2.8E+02 0.0061 22.0 5.6 20 424-443 15-34 (116)
453 KOG0991 Replication factor C, 20.9 6.8E+02 0.015 23.3 12.9 74 331-407 186-271 (333)
454 TIGR01503 MthylAspMut_E methyl 20.7 5.8E+02 0.013 26.3 8.4 46 319-367 69-114 (480)
455 PRK00971 glutaminase; Provisio 20.5 3.1E+02 0.0066 26.6 6.3 75 387-464 163-249 (307)
456 PF13934 ELYS: Nuclear pore co 20.2 6.8E+02 0.015 23.0 10.7 119 269-396 76-198 (226)
457 PF07064 RIC1: RIC1; InterPro 20.2 7.4E+02 0.016 23.4 15.6 25 95-119 85-109 (258)
458 COG4003 Uncharacterized protei 20.1 3.7E+02 0.0081 19.9 5.3 25 310-334 37-61 (98)
459 KOG0687 26S proteasome regulat 20.1 8.3E+02 0.018 23.9 16.4 94 341-436 106-208 (393)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.7e-91 Score=759.00 Aligned_cols=585 Identities=78% Similarity=1.252 Sum_probs=569.3
Q ss_pred cchhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 007193 23 HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVC 102 (613)
Q Consensus 23 ~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~ 102 (613)
.+...+...|+.|++.|++++|+++|++|.+.|+++++..++..++..|.+.|.+++|+++|+.|+.||..+||.++++|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007193 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182 (613)
Q Consensus 103 ~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 182 (613)
++.|+++.|.++|+.|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007193 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (613)
Q Consensus 183 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 262 (613)
++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.....++.||..+|++++.+|++.|++++|.++|+.|.+
T Consensus 528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e 607 (1060)
T PLN03218 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999875567899999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhH
Q 007193 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342 (613)
Q Consensus 263 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 342 (613)
.++.|+..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|+.|.+.|+.||..+|
T Consensus 608 ~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ty 687 (1060)
T PLN03218 608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687 (1060)
T ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 007193 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422 (613)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 422 (613)
++||.+|+++|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~ 767 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhHHHHHHhhhhhhcccCCCcccchhhhHHHHHHHHHHHHcCCCCcH
Q 007193 423 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTV 502 (613)
Q Consensus 423 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 502 (613)
|++++|.++|++|.+.|+.||..+|++++++|.++|++|+.+.+....|+.+.+.....|+.+|+.+|++|++.|+.||.
T Consensus 768 G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~ 847 (1060)
T PLN03218 768 DDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTM 847 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCH
Confidence 99999999999999999999999999999998888999999999999999988888889999999999999999999999
Q ss_pred HHHHHHHhccCCCCchhHHhhHHHhhCCChhhhhcccccccccccccchhHHHHHHHHHHhCCCCCcccccCCceeeccc
Q 007193 503 EVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDAR 582 (613)
Q Consensus 503 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~a~~~~~~a~~~g~~p~~~~~~~~~~~~~~ 582 (613)
+||..+++|+....+...+..|.+.+++.|...+|..++++|+++|...++|+.++++|.+.|++|+..+....+++|+|
T Consensus 848 ~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~~~~A~~l~~em~~~Gi~p~~~~~~~~~~~d~~ 927 (1060)
T PLN03218 848 EVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEYDPRAFSLLEEAASLGVVPSVSFKKSPIVIDAE 927 (1060)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccChHHHHHHHHHHHHcCCCCCcccccCceEEEcc
Confidence 99999999998888888999999999999999999999999999998778999999999999999999888889999999
Q ss_pred cCcchHHHHHHHHHHHHHHHhhHhh
Q 007193 583 KLEIHTAKVYLLTILKGLRHRLAAA 607 (613)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (613)
++++++|++++|+||+++++++++|
T Consensus 928 ~~~~~aa~~~l~~wl~~~~~~~~~g 952 (1060)
T PLN03218 928 ELPVFAAEVYLLTILKGLKHRLAAG 952 (1060)
T ss_pred cCcchhHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999998
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.1e-69 Score=602.36 Aligned_cols=519 Identities=18% Similarity=0.294 Sum_probs=451.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHH----------------------------------HHHHHHHHhhhH
Q 007193 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVY----------------------------------HARFFNVCKSQK 75 (613)
Q Consensus 30 ~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~----------------------------------~~~l~~~~~~~~ 75 (613)
.....+++.|++++|..+|++|.+.|+.|....+ ...++..+.+.|
T Consensus 56 ~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g 135 (857)
T PLN03077 56 SQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFG 135 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCC
Confidence 3445566899999999999999998764433222 233445567778
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHH-------------------------
Q 007193 76 AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY------------------------- 130 (613)
Q Consensus 76 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~------------------------- 130 (613)
+++.|.++|++|++||+++||++|.+|++.|++++|+++|++|...|+.||..||
T Consensus 136 ~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~ 215 (857)
T PLN03077 136 ELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR 215 (857)
T ss_pred ChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999998888887766
Q ss_pred ----------HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007193 131 ----------TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200 (613)
Q Consensus 131 ----------~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 200 (613)
++||.+|+++|++++|.++|++|. .||..+||++|.+|++.|++++|+++|++|.+.|+.||..||
T Consensus 216 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty 291 (857)
T PLN03077 216 FGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTI 291 (857)
T ss_pred cCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHH
Confidence 556667777788888888888876 578888888888888888889999999999988999999999
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 007193 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280 (613)
Q Consensus 201 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 280 (613)
+.++.+|++.|+.+.|.+++..|.+. |+.||..+|++|+.+|++.|++++|.++|+.|.. ||..+||++|.+|+
T Consensus 292 ~~ll~a~~~~g~~~~a~~l~~~~~~~--g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~ 365 (857)
T PLN03077 292 TSVISACELLGDERLGREMHGYVVKT--GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYE 365 (857)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHh--CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHH
Confidence 99999999999999999999998874 7889999999999999999999999999999864 56689999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHH
Q 007193 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360 (613)
Q Consensus 281 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 360 (613)
+.|++++|+++|++|.+.|+.||..||++++.+|++.|++++|.++++.+.+.|+.|+..+|++|+++|+++|++++|.+
T Consensus 366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 445 (857)
T PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445 (857)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCC
Q 007193 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440 (613)
Q Consensus 361 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~ 440 (613)
+|++|. .+|..+|+++|.+|+++|+.++|+++|++|.. +++||..||++++.+|++.|+++.+.+++..+.+.|+
T Consensus 446 vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~ 520 (857)
T PLN03077 446 VFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGI 520 (857)
T ss_pred HHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCC
Confidence 999997 58999999999999999999999999999986 5999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhHHHHHHhhhhhhcccCCCcccchhhhH------------HHHHHHHHHHHcCCCCcHHHHHHH
Q 007193 441 IPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTS------------LALMVYREAIVAGTIPTVEVVSKV 508 (613)
Q Consensus 441 ~p~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~------------~a~~~~~~m~~~g~~p~~~~~~~~ 508 (613)
.+|..++|+||++|+ ++|++.++...|+.+ ..+...|+. .|+.+|++|.+.|+.||.+||..+
T Consensus 521 ~~~~~~~naLi~~y~----k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~l 595 (857)
T PLN03077 521 GFDGFLPNALLDLYV----RCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISL 595 (857)
T ss_pred CccceechHHHHHHH----HcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHH
Confidence 999999999999955 477777777777776 566778886 499999999999999999999998
Q ss_pred H-hccCCCC---chhHHhhHHHhhCCChhhhhcccccccccccccch--hHHHHHHHHHHhCCCCCcccccCCceeec
Q 007193 509 L-GCLQLPY---NADIRERLVENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVPCVSFKEIPVVVD 580 (613)
Q Consensus 509 l-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~--~~a~~~~~~a~~~g~~p~~~~~~~~~~~~ 580 (613)
+ +|++.+. +.++++.|.+.+|+.|+..||+ ++++.+||.+ ++|..++++| |..||..+|.
T Consensus 596 l~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~---~lv~~l~r~G~~~eA~~~~~~m---------~~~pd~~~~~ 661 (857)
T PLN03077 596 LCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA---CVVDLLGRAGKLTEAYNFINKM---------PITPDPAVWG 661 (857)
T ss_pred HHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH---HHHHHHHhCCCHHHHHHHHHHC---------CCCCCHHHHH
Confidence 7 5666654 4557888888999999999998 6888887642 4555555554 4555555554
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.4e-67 Score=579.22 Aligned_cols=543 Identities=19% Similarity=0.296 Sum_probs=430.3
Q ss_pred hhHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCchHHH----------------------------------HHHHH
Q 007193 27 EQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVY----------------------------------HARFF 68 (613)
Q Consensus 27 ~~~~~~~~l~----~~g~~~~A~~l~~~m~~~~~~~~~~~~----------------------------------~~~l~ 68 (613)
+++.+||.++ +.|++++|+++|++|.+.|+.|+..++ ...++
T Consensus 150 ~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li 229 (857)
T PLN03077 150 RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI 229 (857)
T ss_pred CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHH
Confidence 4566777766 799999999999999988876653332 34456
Q ss_pred HHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 007193 69 NVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148 (613)
Q Consensus 69 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 148 (613)
..|.+.|++++|.++|++|+.+|.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+
T Consensus 230 ~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~ 309 (857)
T PLN03077 230 TMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGRE 309 (857)
T ss_pred HHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHH
Confidence 66778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC
Q 007193 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228 (613)
Q Consensus 149 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 228 (613)
++..|.+.|+.||..+||+||.+|++.|++++|.++|++|. .||.++||++|.+|++.|++++|.++|++|...
T Consensus 310 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~-- 383 (857)
T PLN03077 310 MHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQD-- 383 (857)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh--
Confidence 99999888888888888888888888888888888888775 457777777777777777777777777777653
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----------
Q 007193 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK----------- 297 (613)
Q Consensus 229 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----------- 297 (613)
++.||..+|+.++.+|++.|+++.|.++++.+.+.|+.|+..+|++||++|++.|++++|.++|++|.+
T Consensus 384 g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~ 463 (857)
T PLN03077 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIA 463 (857)
T ss_pred CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHH
Confidence 566666666666666666666666666666666666666555555555555555555555555544432
Q ss_pred -------------------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHH
Q 007193 298 -------------------KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358 (613)
Q Consensus 298 -------------------~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 358 (613)
.++.||..||++++.+|++.|.++.+.+++..+.+.|+.+|..++|+|+++|+++|++++|
T Consensus 464 ~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A 543 (857)
T PLN03077 464 GLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYA 543 (857)
T ss_pred HHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHH
Confidence 2467777778888888888888888888888888888888888888888999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH-H
Q 007193 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK-E 437 (613)
Q Consensus 359 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~-~ 437 (613)
.++|+.+ .||..+||+||.+|+++|+.++|+++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|. +
T Consensus 544 ~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~ 618 (857)
T PLN03077 544 WNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEK 618 (857)
T ss_pred HHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHH
Confidence 9998887 489999999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred cCCCCCHHHHHHHHHHHHhhHHHHHHhhhhhhcccCCCcccchhhhHHHHHHHHHHHHcCCCCcHHHHHHHHhccCCCCc
Q 007193 438 DGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYN 517 (613)
Q Consensus 438 ~g~~p~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~l~~~~~~~~ 517 (613)
.|+.|+..+|++++++|++ +|.+.+ |..++++| +++||..+|..+++.|..+++
T Consensus 619 ~gi~P~~~~y~~lv~~l~r----~G~~~e-------------------A~~~~~~m---~~~pd~~~~~aLl~ac~~~~~ 672 (857)
T PLN03077 619 YSITPNLKHYACVVDLLGR----AGKLTE-------------------AYNFINKM---PITPDPAVWGALLNACRIHRH 672 (857)
T ss_pred hCCCCchHHHHHHHHHHHh----CCCHHH-------------------HHHHHHHC---CCCCCHHHHHHHHHHHHHcCC
Confidence 8999999999999999665 444443 45556665 589999999999988888888
Q ss_pred hhHHhhHHHh-hCCChh-hhhcccccccccccccchhHHHHHHHHHHhCCCCCcc--cccC----CceeeccccCcchHH
Q 007193 518 ADIRERLVEN-LGVSAD-ALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCV--SFKE----IPVVVDARKLEIHTA 589 (613)
Q Consensus 518 ~~~~~~~~~~-~~~~~~-~~~~~~~~~~i~~~g~~~~~a~~~~~~a~~~g~~p~~--~~~~----~~~~~~~~~~~~~~~ 589 (613)
.+..+...+. ..+.|+ +..|..+++++...|+|. +|.++.++|.+.|+.++. +++. -|.+......++...
T Consensus 673 ~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~-~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~ 751 (857)
T PLN03077 673 VELGELAAQHIFELDPNSVGYYILLCNLYADAGKWD-EVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIK 751 (857)
T ss_pred hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChH-HHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchH
Confidence 7777666544 467776 455665667778889875 466999999999998653 3321 244455667788899
Q ss_pred HHHHHHHHHHHHHhhH-hhhh
Q 007193 590 KVYLLTILKGLRHRLA-AAIL 609 (613)
Q Consensus 590 ~~~~~~~~~~~~~~~~-~~~~ 609 (613)
+||- .|..+.+++. +||.
T Consensus 752 ~i~~--~l~~l~~~~~~~g~~ 770 (857)
T PLN03077 752 EINT--VLEGFYEKMKASGLA 770 (857)
T ss_pred HHHH--HHHHHHHHHHhCCcC
Confidence 9886 6777755553 4543
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.2e-63 Score=537.48 Aligned_cols=465 Identities=23% Similarity=0.398 Sum_probs=420.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHcCC
Q 007193 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSK 106 (613)
Q Consensus 31 ~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~ 106 (613)
.++.+.+.|.+++|..+|+.|.. | +...+..++..|.+.|++++|.++|+.|. .||..+||++|.+|++.|
T Consensus 412 li~~~~~~g~~~eAl~lf~~M~~----p-d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G 486 (1060)
T PLN03218 412 FFKACKKQRAVKEAFRFAKLIRN----P-TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSG 486 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHcCC----C-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCc
Confidence 34456689999999999999975 3 45566678888899999999999999875 689999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007193 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186 (613)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 186 (613)
++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|+
T Consensus 487 ~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~ 566 (1060)
T PLN03218 487 KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLA 566 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHh--CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 007193 187 IMRS--KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264 (613)
Q Consensus 187 ~m~~--~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 264 (613)
+|.. .|+.||.++|+++|.+|++.|++++|.++|+.|.+. ++.|+..+|+.+|.+|++.|++++|.++|++|.+.|
T Consensus 567 eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~--gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G 644 (1060)
T PLN03218 567 EMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY--NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG 644 (1060)
T ss_pred HHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 9986 689999999999999999999999999999999975 789999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHH
Q 007193 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 344 (613)
Q Consensus 265 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 344 (613)
+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+||.
T Consensus 645 v~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~ 724 (1060)
T PLN03218 645 VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNA 724 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh---
Q 007193 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER--- 421 (613)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~--- 421 (613)
||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|++++..|.+
T Consensus 725 LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ 804 (1060)
T PLN03218 725 LITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFE 804 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876542
Q ss_pred --------------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--hHHHHHHhhhhhhcccCCCccc-
Q 007193 422 --------------------KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQI- 478 (613)
Q Consensus 422 --------------------~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~~- 478 (613)
.+..++|..+|++|.+.|+.||..+|+.++.++.. ....+..+.+.+. ..+..+..
T Consensus 805 ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~-~~~~~~~~~ 883 (1060)
T PLN03218 805 KACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG-ISADSQKQS 883 (1060)
T ss_pred HHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhc-cCCCCcchh
Confidence 12347899999999999999999999999965533 3445554444321 11111110
Q ss_pred -----chh---hhHHHHHHHHHHHHcCCCCcHH
Q 007193 479 -----ENK---WTSLALMVYREAIVAGTIPTVE 503 (613)
Q Consensus 479 -----~~~---~~~~a~~~~~~m~~~g~~p~~~ 503 (613)
..+ +...|+.+|++|...|+.|+..
T Consensus 884 ~y~~Li~g~~~~~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 884 NLSTLVDGFGEYDPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hhHHHHHhhccChHHHHHHHHHHHHcCCCCCcc
Confidence 011 3346999999999999999975
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.5e-62 Score=532.65 Aligned_cols=500 Identities=20% Similarity=0.306 Sum_probs=438.4
Q ss_pred HHHHHHhhhHHHHHHHHHHHhCC-----CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 007193 66 RFFNVCKSQKAIKEAFRFFKLVP-----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140 (613)
Q Consensus 66 ~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 140 (613)
.++..+.+.|++++|+++|+.|. .||..+|++++.+|++.++++.|.+++..|.+.|+.||..+|+.|+.+|++.
T Consensus 92 ~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~ 171 (697)
T PLN03081 92 SQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKC 171 (697)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcC
Confidence 34455666777888888887663 4789999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 007193 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVL 220 (613)
Q Consensus 141 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 220 (613)
|++++|.++|++|. .||..+||++|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|..+.+.+++
T Consensus 172 g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~ 247 (697)
T PLN03081 172 GMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLH 247 (697)
T ss_pred CCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHH
Confidence 99999999999997 68999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007193 221 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300 (613)
Q Consensus 221 ~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 300 (613)
..+.+. ++.||..++++|+++|++.|++++|.++|+.|.. +|..+||+||.+|++.|++++|.++|++|.+.|+
T Consensus 248 ~~~~~~--g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 248 CCVLKT--GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHHHHh--CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 999875 7899999999999999999999999999999965 4678999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007193 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380 (613)
Q Consensus 301 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 380 (613)
.||..||++++.+|++.|++++|.+++..|.+.|+.||..+|++|+++|+++|++++|.++|++|. .||..+||+|
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~l 397 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNAL 397 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999997 5899999999
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhhHH
Q 007193 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-DGVIPNLVMFKCIIGMCSRRYE 459 (613)
Q Consensus 381 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~~~ 459 (613)
|.+|+++|+.++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|+.|.+ .|+.|+..+|+++|++|++
T Consensus 398 I~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r--- 474 (697)
T PLN03081 398 IAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR--- 474 (697)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh---
Confidence 999999999999999999999999999999999999999999999999999999985 7999999999999999765
Q ss_pred HHHHhhhhhhcccCCCcccchhhhHHHHHHHHHHHHcCCCCcHHHHHHHHhccCCCCchhHHhhHHH-hhCCChh-hhhc
Q 007193 460 KARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVE-NLGVSAD-ALKR 537 (613)
Q Consensus 460 ~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~ 537 (613)
+|.+.+ |..++++ .++.||..+|..+++.|..+++.+....+.+ ..++.|+ ...|
T Consensus 475 -~G~~~e-------------------A~~~~~~---~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y 531 (697)
T PLN03081 475 -EGLLDE-------------------AYAMIRR---APFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNY 531 (697)
T ss_pred -cCCHHH-------------------HHHHHHH---CCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcch
Confidence 444443 3344443 4789999999999976666666555555444 3577776 5678
Q ss_pred ccccccccccccchhHHHHHHHHHHhCCCC--CcccccC----CceeeccccCcchHHHHHHHHHHHHHHHhh-Hhhh
Q 007193 538 SNLCSLIDGFGEYDPRAFSLLEEAASFGIV--PCVSFKE----IPVVVDARKLEIHTAKVYLLTILKGLRHRL-AAAI 608 (613)
Q Consensus 538 ~~~~~~i~~~g~~~~~a~~~~~~a~~~g~~--p~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 608 (613)
..+..++...|+| ++|..++++|.+.|+. |..++.. -+.++.....++...++|- .|..+..++ ++||
T Consensus 532 ~~L~~~y~~~G~~-~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~--~l~~l~~~~~~~gy 606 (697)
T PLN03081 532 VVLLNLYNSSGRQ-AEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQ--KLDELMKEISEYGY 606 (697)
T ss_pred HHHHHHHHhCCCH-HHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHH--HHHHHHHHHHHcCC
Confidence 7766777777876 5788999999999986 3333321 1444555566777888775 555554443 3454
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.8e-59 Score=503.54 Aligned_cols=461 Identities=18% Similarity=0.272 Sum_probs=400.2
Q ss_pred hhHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 007193 27 EQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVC 102 (613)
Q Consensus 27 ~~~~~~~~l~----~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~ 102 (613)
++..+|+.++ +.++++.|.+++..|.+.|+.| +..++..++..+.+.|++++|.++|++|+.||.++||+++.+|
T Consensus 121 ~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~ 199 (697)
T PLN03081 121 LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGL 199 (697)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHH
Confidence 3444454444 5677777777777777777654 4555666778888889999999999999999999999999999
Q ss_pred HcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007193 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182 (613)
Q Consensus 103 ~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 182 (613)
++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|..+.+.+++..+.+.|+.||..+||+||++|++.|++++|.
T Consensus 200 ~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~ 279 (697)
T PLN03081 200 VDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDAR 279 (697)
T ss_pred HHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007193 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (613)
Q Consensus 183 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 262 (613)
++|++|. ++|.++||++|.+|++.|+.++|.++|++|... ++.||..||++++.+|++.|++++|.+++..|.+
T Consensus 280 ~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~--g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~ 353 (697)
T PLN03081 280 CVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS--GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR 353 (697)
T ss_pred HHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 9999996 468999999999999999999999999999874 7899999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhH
Q 007193 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342 (613)
Q Consensus 263 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 342 (613)
.|+.|+..+|++||++|++.|++++|.++|++|.+ ||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||
T Consensus 354 ~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~ 429 (697)
T PLN03081 354 TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTF 429 (697)
T ss_pred hCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHH
Confidence 99999999999999999999999999999999964 68899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 007193 343 SSLMGACSNAKNWQKALELYEHMKS-IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421 (613)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 421 (613)
++++.+|++.|.+++|.++|+.|.+ .|+.|+..+|++|+.+|++.|++++|.+++++| ++.|+..+|++++.+|..
T Consensus 430 ~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~ 506 (697)
T PLN03081 430 LAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRI 506 (697)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999976 689999999999999999999999999998876 478999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh--hHHHHHHhhhhhhcccC----C-------------------C
Q 007193 422 KDDVEVGLMLLSQAKEDGVIPN-LVMFKCIIGMCSR--RYEKARTLNEHVLSFNS----G-------------------R 475 (613)
Q Consensus 422 ~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~----~-------------------~ 475 (613)
.|+++.|..+++++.+ +.|+ ..+|+.|+++|++ ++++|.++.+.+..-.- + +
T Consensus 507 ~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h 584 (697)
T PLN03081 507 HKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLH 584 (697)
T ss_pred cCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCC
Confidence 9999999999998875 5564 6789999999877 67777776554432110 0 1
Q ss_pred cccchhhhHHHHHHHHHHHHcCCCCcHHH
Q 007193 476 PQIENKWTSLALMVYREAIVAGTIPTVEV 504 (613)
Q Consensus 476 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 504 (613)
|.....+ .....+..+|.+.|..||...
T Consensus 585 ~~~~~i~-~~l~~l~~~~~~~gy~~~~~~ 612 (697)
T PLN03081 585 PQSREIY-QKLDELMKEISEYGYVAEENE 612 (697)
T ss_pred ccHHHHH-HHHHHHHHHHHHcCCCCCcch
Confidence 1111111 234567788999999998644
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.98 E-value=1.1e-26 Score=263.83 Aligned_cols=515 Identities=16% Similarity=0.077 Sum_probs=351.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChH
Q 007193 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSE 109 (613)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~ 109 (613)
..+.+.|++++|...++++...+ |.+......++..+...|++++|.++|+++. +.+...+..+...+...|+++
T Consensus 337 ~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 414 (899)
T TIGR02917 337 SIQLRLGRVDEAIATLSPALGLD--PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPS 414 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChH
Confidence 33446666666666666666554 3444444555556666666777777766543 334555666666666777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (613)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (613)
+|...++.+.+.. +........++..+.+.|++++|.++++.+.... +++..+|..+...|...|++++|...|+++.
T Consensus 415 ~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 492 (899)
T TIGR02917 415 EAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKAL 492 (899)
T ss_pred HHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 7777777666543 2233445556667777777777777777776543 4566778888888888888888888888877
Q ss_pred hCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH
Q 007193 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269 (613)
Q Consensus 190 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 269 (613)
+.. +.+...+..+...+...|++++|.+.++++... .+.+..++..+...+.+.|+.++|...++++...+ +.+.
T Consensus 493 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 567 (899)
T TIGR02917 493 SIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTI---DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEI 567 (899)
T ss_pred hhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccch
Confidence 653 334556677777888888888888888887753 24456677778888888888888888888887765 5566
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHH
Q 007193 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (613)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (613)
..+..++..|.+.|++++|..+++.+..... .+..+|..+...+...|++++|...++.+.+.. +.+...+..+...|
T Consensus 568 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 645 (899)
T TIGR02917 568 EPALALAQYYLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAY 645 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 7778888888888888888888888876543 367788888888888888999988888887764 45677788888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 007193 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429 (613)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 429 (613)
.+.|++++|..+|+++.+.. +.+..+|..++..+...|++++|.++++.+.+.+ +++...+..+...+...|++++|.
T Consensus 646 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~ 723 (899)
T TIGR02917 646 AVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAI 723 (899)
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHH
Confidence 88899999999888887653 3457888888888888999999999998888764 456777888888888999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHh--hHHHHHHhhhhhhcccCCCcccchhh------------hHHHHHHHHHHHH
Q 007193 430 MLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKW------------TSLALMVYREAIV 495 (613)
Q Consensus 430 ~~~~~m~~~g~~p~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~------------~~~a~~~~~~m~~ 495 (613)
..++++.+.+ |+..++..+..++.+ ++++|....+......+. +...+ ...|...|+++++
T Consensus 724 ~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 798 (899)
T TIGR02917 724 QAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN---DAVLRTALAELYLAQKDYDKAIKHYRTVVK 798 (899)
T ss_pred HHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9998888754 444555556666554 566666554443322222 22111 2247888888877
Q ss_pred cCCCCcHHHHHHHHh--ccCCCCchhHHhhHHHhhCCChhhh-hcccccccccccccchhHHHHHHHHHHhCCCCCccc
Q 007193 496 AGTIPTVEVVSKVLG--CLQLPYNADIRERLVENLGVSADAL-KRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVS 571 (613)
Q Consensus 496 ~g~~p~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~g~~~~~a~~~~~~a~~~g~~p~~~ 571 (613)
. .|+.......++ ....+. .+......+.....|+.. ....++.+....|+ .++|...+++|++. .|+.|
T Consensus 799 ~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~a~~~--~~~~~ 871 (899)
T TIGR02917 799 K--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGE-ADRALPLLRKAVNI--APEAA 871 (899)
T ss_pred h--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHhh--CCCCh
Confidence 5 355443333332 223333 445555555555666533 22223333444454 36788999999875 45544
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=6e-26 Score=257.78 Aligned_cols=511 Identities=13% Similarity=0.058 Sum_probs=405.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCC
Q 007193 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKD 107 (613)
Q Consensus 31 ~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~ 107 (613)
....+.+.|++++|.+.|+++.+.+ |.+...+..+...+...|++++|.+.|+.+. +.+...+..++..+.+.|+
T Consensus 369 l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 446 (899)
T TIGR02917 369 LGEAYLALGDFEKAAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQ 446 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCC
Confidence 3345568999999999999999876 6666677777778888899999999998754 3345566778888999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007193 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (613)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (613)
+++|..+++.+.... +++..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|++
T Consensus 447 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 524 (899)
T TIGR02917 447 FDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEK 524 (899)
T ss_pred HHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999998754 6678899999999999999999999999998764 45677788899999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 007193 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267 (613)
Q Consensus 188 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 267 (613)
+...+ +.+..++..+...+.+.|+.++|...+.++.... +.+...+..+...|.+.|++++|..+++.+.+.. +.
T Consensus 525 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 599 (899)
T TIGR02917 525 VLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN---PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PD 599 (899)
T ss_pred HHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CC
Confidence 98764 4567888899999999999999999999987642 4556778889999999999999999999998765 66
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 007193 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (613)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 347 (613)
+..+|..+...+...|++++|...|+.+.+.... +...+..+...+.+.|++++|...++.+.+.. +.+..++..+..
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 677 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQ 677 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 7889999999999999999999999999876543 66788889999999999999999999998875 566889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHH
Q 007193 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427 (613)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 427 (613)
.+...|++++|..+++.+.+.. +++...+..+...+.+.|++++|.+.|+++... .|+..++..+..++.+.|++++
T Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 754 (899)
T TIGR02917 678 LLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAE 754 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHH
Confidence 9999999999999999998775 456778888999999999999999999999885 4666788889999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHh--hHHHHHHhhhhhhcccCCCcccchhhh-----------HHHHHHHHHHH
Q 007193 428 GLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWT-----------SLALMVYREAI 494 (613)
Q Consensus 428 a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~-----------~~a~~~~~~m~ 494 (613)
|.+.++++.+.. ..+...+..+...|.+ ++++|....+......+. +...+. ..|+..+++.+
T Consensus 755 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~~A~~~~~~~~ 830 (899)
T TIGR02917 755 AVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD---NAVVLNNLAWLYLELKDPRALEYAEKAL 830 (899)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 999999988753 3456677777777664 677777766655433332 222222 23777777776
Q ss_pred HcCCCCcHHHHHHHHh--ccCCCCchhHHhhHHHhhCCCh-hhhhcccccccccccccchhHHHHHHHHHH
Q 007193 495 VAGTIPTVEVVSKVLG--CLQLPYNADIRERLVENLGVSA-DALKRSNLCSLIDGFGEYDPRAFSLLEEAA 562 (613)
Q Consensus 495 ~~g~~p~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~g~~~~~a~~~~~~a~ 562 (613)
+. .|+...+...++ +...+.-.+....+.+.....| ++..+..++..+...|+. ++|...+++++
T Consensus 831 ~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 898 (899)
T TIGR02917 831 KL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRK-AEARKELDKLL 898 (899)
T ss_pred hh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH-HHHHHHHHHHh
Confidence 64 466554443343 2334444555555555555555 455555555555555763 56888888875
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=3.8e-20 Score=188.58 Aligned_cols=300 Identities=13% Similarity=0.101 Sum_probs=150.4
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCH
Q 007193 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN---VHTYGALIDGCAKAGQV 178 (613)
Q Consensus 102 ~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~ 178 (613)
+...|++++|...|+.+.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 445566666666666666553 33445566666666666666666666666655321111 23455566666666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC---HHHHHHHHHHHHhcCChHHHHH
Q 007193 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD---HITIGALMKACANAGQVDRARE 255 (613)
Q Consensus 179 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~A~~ 255 (613)
++|..+|+++.+.. +++..+++.++..+.+.|++++|.+.++.+.... +..+. ...+..+...+.+.|++++|..
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG-GDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 66666666665542 3345556666666666666666666666655421 00111 1122334444445555555555
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007193 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335 (613)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 335 (613)
.|+++.+.. +.+...+..+...+.+.|++++|.++|+++...+..
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~---------------------------------- 246 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPE---------------------------------- 246 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh----------------------------------
Confidence 555554432 223334444445555555555555555554443221
Q ss_pred CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 007193 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415 (613)
Q Consensus 336 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 415 (613)
....+++.++.+|.+.|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..++..+
T Consensus 247 -~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l 321 (389)
T PRK11788 247 -YLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRL 321 (389)
T ss_pred -hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHH
Confidence 11233444445555555555555555554443 233333444555555555555555555554442 3555555544
Q ss_pred HHHHhh---cCCHHHHHHHHHHHHHcCCCCCH
Q 007193 416 LVACER---KDDVEVGLMLLSQAKEDGVIPNL 444 (613)
Q Consensus 416 l~a~~~---~g~~~~a~~~~~~m~~~g~~p~~ 444 (613)
+..+.. .|+.+++..++++|.+.++.|++
T Consensus 322 ~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 322 LDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred HHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 444332 33455555555555544444433
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=7.6e-20 Score=186.33 Aligned_cols=276 Identities=18% Similarity=0.157 Sum_probs=191.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCC--CHHHHHHHHHHHHhcCC
Q 007193 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP--DHITIGALMKACANAGQ 249 (613)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~~~ll~~~~~~g~ 249 (613)
+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+.... ...+ ....+..+...|.+.|+
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP-DLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHCCC
Confidence 344455555555555555442 2233345555555555555555555555554321 0110 11345556666666666
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHH
Q 007193 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE----VFLSALIDFAGHAGKVEAAFE 325 (613)
Q Consensus 250 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~ 325 (613)
+++|..+|+++.+.. +.+..+++.++..+.+.|++++|.+.++.+.+.+..++. ..+..+...+.+.|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 777776666666543 344566677777777777777777777777665433221 234556677778888888888
Q ss_pred HHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCC
Q 007193 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405 (613)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 405 (613)
.++++.+.. +.+...+..+...|.+.|++++|.++|+++.+.+......+++.++.+|.+.|++++|.+.++++.+.
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 278 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-- 278 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 888887764 34566778888999999999999999999987542222467889999999999999999999999885
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007193 406 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (613)
Q Consensus 406 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 455 (613)
.|+...+..+...+.+.|++++|..+++++.+. .|+...++.++..+.
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHL 326 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhh
Confidence 577777888999999999999999999999874 699988888887654
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.88 E-value=6.2e-17 Score=185.12 Aligned_cols=285 Identities=16% Similarity=0.141 Sum_probs=187.5
Q ss_pred ccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHH----------------HHHHHHHhhhHHHHHHHHHHH
Q 007193 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYH----------------ARFFNVCKSQKAIKEAFRFFK 85 (613)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~----------------~~l~~~~~~~~~~~~A~~~~~ 85 (613)
|.++.........+.+.|+.++|.+.++++.+.. |.+..+. ....+.+...|++++|++.|+
T Consensus 59 p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~ 136 (1157)
T PRK11447 59 PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYD 136 (1157)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHH
Confidence 4455555555666678899999999999998877 4444332 122334566788899998888
Q ss_pred hCCC---CCHH-HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC---
Q 007193 86 LVPN---PTLS-TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI--- 158 (613)
Q Consensus 86 ~~~~---~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--- 158 (613)
+... ++.. ............|+.++|...++.+.+.. +.+...+..+...+...|+.++|++.++++.....
T Consensus 137 ~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~ 215 (1157)
T PRK11447 137 KLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRD 215 (1157)
T ss_pred HHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchH
Confidence 7642 2221 11111122234588888999998888764 55677778888888888898888888887754310
Q ss_pred ---------------C--------------CCHHHH---------------------HHHHHHHHhcCCHHHHHHHHHHH
Q 007193 159 ---------------E--------------PNVHTY---------------------GALIDGCAKAGQVAKAFGAYGIM 188 (613)
Q Consensus 159 ---------------~--------------~~~~~~---------------------~~li~~~~~~g~~~~A~~~~~~m 188 (613)
. |+.... ......+...|++++|+..|++.
T Consensus 216 ~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~a 295 (1157)
T PRK11447 216 AAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQA 295 (1157)
T ss_pred HHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 0 000000 01123456678888898888888
Q ss_pred HhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHH------------HHHHHHHHhcCChHHHHHH
Q 007193 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI------------GALMKACANAGQVDRAREV 256 (613)
Q Consensus 189 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~------------~~ll~~~~~~g~~~~A~~~ 256 (613)
.+.. +.+...+..+...+.+.|++++|...|++....... .++...+ ......+.+.|++++|...
T Consensus 296 L~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~-~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~ 373 (1157)
T PRK11447 296 VRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH-SSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERL 373 (1157)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8763 336777888888888889999999888887754211 1111111 1223456788888999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007193 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (613)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 313 (613)
|+++.+.. +.+...+..+...+...|++++|++.|++..+.... +...+..+...
T Consensus 374 ~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l 428 (1157)
T PRK11447 374 YQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANL 428 (1157)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 98888875 556677788888888889999999998888876432 33344444333
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.87 E-value=9.6e-18 Score=191.75 Aligned_cols=388 Identities=11% Similarity=0.042 Sum_probs=293.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC--CCC---HHHHHH-----------
Q 007193 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPT---LSTFNM----------- 97 (613)
Q Consensus 34 ~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~---~~~~~~----------- 97 (613)
.+...|++++|+..|++..+.. |.+...+..+..++...|++++|+..|++.. .|+ ...|..
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 3457899999999999998877 6777777888888888899999999998754 222 122222
Q ss_pred -HHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007193 98 -LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (613)
Q Consensus 98 -li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 176 (613)
....+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|++.|++..+.. +.+...+..+...|. .+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hc
Confidence 2345678899999999999998874 4567778888899999999999999999988764 345666777777764 45
Q ss_pred CHHHHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcC
Q 007193 177 QVAKAFGAYGIMRSKNVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248 (613)
Q Consensus 177 ~~~~A~~~~~~m~~~g~~--------p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g 248 (613)
+.++|...++.+...... .....+..+...+...|++++|.+.|++..... +.+...+..+...|.+.|
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~---P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD---PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcC
Confidence 788898888766432100 011234556677888999999999999988642 334566777888899999
Q ss_pred ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHHhcCC
Q 007193 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV---------FLSALIDFAGHAGK 319 (613)
Q Consensus 249 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---------~~~~li~~~~~~g~ 319 (613)
++++|...++++.+.. +.++..+..+...+...++.++|+..++.+......++.. .+......+...|+
T Consensus 510 ~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 9999999999988764 4456666666667788899999999988765433222221 12344567888999
Q ss_pred HHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 007193 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399 (613)
Q Consensus 320 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 399 (613)
.++|..+++. .+.+...+..+...+.+.|++++|...|++..+.. +.+...+..++..|...|++++|++.++.
T Consensus 589 ~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 589 EAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999998872 35566777888999999999999999999998764 34678899999999999999999999998
Q ss_pred HHhCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 007193 400 MKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKED 438 (613)
Q Consensus 400 m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (613)
..+. .| +..++..+..++...|++++|.++++++...
T Consensus 663 ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 663 LPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred Hhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 7763 44 4556667778888999999999999998864
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=4.9e-17 Score=173.93 Aligned_cols=358 Identities=9% Similarity=-0.000 Sum_probs=168.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCC-CchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChH
Q 007193 34 RLIRQGRISECIDLLEDMERKGLL-DMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSE 109 (613)
Q Consensus 34 ~l~~~g~~~~A~~l~~~m~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~ 109 (613)
+|+++.+++.-+-.|..-+++--- ..+..-...++..+.+.|++++|+.++..+. +.+...+..++.+....|+++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 14 TLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHH
Confidence 456666666555555444332100 0111111122223334455555555554432 223333334444444555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (613)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (613)
.|...++.+.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++.+.
T Consensus 94 ~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 94 AVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 5555555555443 3334455555555555555555555555555432 2234455555555555555555555555554
Q ss_pred hCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH
Q 007193 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269 (613)
Q Consensus 190 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 269 (613)
.... .+...+..+ ..+...|++++|...++.+.... ..++......+...+.+.|++++|...+++....+ +.+.
T Consensus 172 ~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~--~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~ 246 (656)
T PRK15174 172 QEVP-PRGDMIATC-LSFLNKSRLPEDHDLARALLPFF--ALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGA 246 (656)
T ss_pred HhCC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcC--CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCH
Confidence 3321 112222222 22445555555555555544321 01122222333444555555555555555555443 3344
Q ss_pred HHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHH
Q 007193 270 EVYTIAINCCSQTGDWEF----ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345 (613)
Q Consensus 270 ~~~~~li~~~~~~g~~~~----a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 345 (613)
..+..+...+...|++++ |...|++.....+. +...+..+...+.+.|++++|...++...+.. +.+...+..+
T Consensus 247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~L 324 (656)
T PRK15174 247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMY 324 (656)
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 555555555555555553 45555555544322 34455555555555555555555555555443 2334444445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007193 346 MGACSNAKNWQKALELYEHMKSIKLKPTV-STMNALITALCDGDQLPKTMEVLSDMKS 402 (613)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (613)
...|.+.|++++|...|+++.+.+ |+. ..+..+..++...|+.++|.+.|++..+
T Consensus 325 a~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 325 ARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555555555555555555554432 332 2222233445555555555555555544
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.86 E-value=3.4e-18 Score=166.14 Aligned_cols=395 Identities=14% Similarity=0.104 Sum_probs=271.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHcC
Q 007193 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL---VPNPTLSTFNMLMSVCASS 105 (613)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~ 105 (613)
......+.+.|++.+|.+--..+-+++ |.+.....++...+.+..+++.....-.. ..+.-..+|..+.+.+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 334455668999999998877776666 32222222222333333333332221111 1223456777788888888
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHHHH
Q 007193 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG-ALIDGCAKAGQVAKAFGA 184 (613)
Q Consensus 106 ~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~ 184 (613)
|+++.|+.+++.+.+.. +.....|..+..++...|+.+.|.+.|.+..+. .|+..... .+...+...|+.++|...
T Consensus 130 g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 88888888888888763 334667888888888888888888888877765 45544433 344444557888888888
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007193 185 YGIMRSKNVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHK 262 (613)
Q Consensus 185 ~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 262 (613)
|.+..+. .|. .+.|+.|...+-..|+...|++.|++.... .|+ ...|-.|...|...+.++.|...+.+...
T Consensus 207 YlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl----dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~ 280 (966)
T KOG4626|consen 207 YLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL----DPNFLDAYINLGNVYKEARIFDRAVSCYLRALN 280 (966)
T ss_pred HHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC----CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh
Confidence 8777765 333 456777777777888888888888877643 444 44677777778888888888887777766
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhH
Q 007193 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342 (613)
Q Consensus 263 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 342 (613)
.. +....++..|...|...|..+.|+..+++..+..+. -...|+.+..++-..|++.+|...+....... +......
T Consensus 281 lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam 357 (966)
T KOG4626|consen 281 LR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAM 357 (966)
T ss_pred cC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHH
Confidence 53 444567777777788888888888888887765332 24567888888888888888888888777664 3445677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHh
Q 007193 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSILLVACE 420 (613)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~ 420 (613)
+.|...|...|.+++|..+|....+. .|. ....+.|...|-+.|++++|+..+++..+ +.|+- ..|+.+-..|-
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~k 433 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYK 433 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHH
Confidence 77888888888888888888777653 344 45677777888888888888888887776 56764 56777777777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC
Q 007193 421 RKDDVEVGLMLLSQAKEDGVIPN 443 (613)
Q Consensus 421 ~~g~~~~a~~~~~~m~~~g~~p~ 443 (613)
..|+++.|.+.+.+.+. +.|.
T Consensus 434 e~g~v~~A~q~y~rAI~--~nPt 454 (966)
T KOG4626|consen 434 EMGDVSAAIQCYTRAIQ--INPT 454 (966)
T ss_pred HhhhHHHHHHHHHHHHh--cCcH
Confidence 88888888888877776 4454
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=6.8e-17 Score=172.86 Aligned_cols=325 Identities=11% Similarity=0.011 Sum_probs=266.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChH
Q 007193 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSE 109 (613)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~ 109 (613)
-.+.+.|++++|..+++...... |.+......++......|++++|...|+++. +.+...+..+...+.+.|+++
T Consensus 50 ~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~ 127 (656)
T PRK15174 50 IACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYA 127 (656)
T ss_pred HHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHH
Confidence 34558999999999999999877 6666666666677777899999999999864 456778888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (613)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (613)
+|...++.+.+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+ ..+.+.|++++|...++.+.
T Consensus 128 ~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l 204 (656)
T PRK15174 128 TVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALL 204 (656)
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHH
Confidence 9999999999764 5567788999999999999999999999887653 2233344333 34788999999999999988
Q ss_pred hCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHH----HHHHHHHHHhcCC
Q 007193 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR----AREVYKMIHKYNI 265 (613)
Q Consensus 190 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~----A~~~~~~~~~~~~ 265 (613)
.....++...+..+..++...|++++|...+++..... +.+...+..+...+...|++++ |...|++..+..
T Consensus 205 ~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~---p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~- 280 (656)
T PRK15174 205 PFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG---LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN- 280 (656)
T ss_pred hcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-
Confidence 76433445555666788899999999999999998642 4457778889999999999986 899999998875
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHH
Q 007193 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345 (613)
Q Consensus 266 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 345 (613)
+.+..++..+...+.+.|++++|...+++.....+. +...+..+..++.+.|++++|...++.+...+ +.+...+..+
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-P~~~~~~~~~ 358 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK-GVTSKWNRYA 358 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccchHHHHHH
Confidence 567889999999999999999999999999987544 56677788899999999999999999998774 2233344456
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 007193 346 MGACSNAKNWQKALELYEHMKSI 368 (613)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m~~~ 368 (613)
..++...|+.++|...|++..+.
T Consensus 359 a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 359 AAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh
Confidence 67889999999999999998875
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.85 E-value=5.2e-18 Score=164.89 Aligned_cols=388 Identities=14% Similarity=0.143 Sum_probs=318.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChHHHHH
Q 007193 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQ 113 (613)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~ 113 (613)
+..+++...+--....+.. |.....+..+..++...|++++|+.+++.+. +..+..|..+..++...|+.+.|.+
T Consensus 94 q~~r~d~s~a~~~~a~r~~--~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~ 171 (966)
T KOG4626|consen 94 QGSRLDKSSAGSLLAIRKN--PQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQ 171 (966)
T ss_pred cccchhhhhhhhhhhhhcc--chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHH
Confidence 4445555544444444444 6777788889999999999999999999765 4567789999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHH-HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007193 114 VLRLVQEAGLKADCKLY-TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (613)
Q Consensus 114 ~~~~m~~~g~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 192 (613)
.|....+. .|+.... +.+-..+...|++++|..-|.+.++.. +--...|+.|...+-.+|+...|+.-|++....
T Consensus 172 ~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl- 247 (966)
T KOG4626|consen 172 CFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL- 247 (966)
T ss_pred HHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC-
Confidence 99988865 5665443 344555566899999999998887763 223567999999999999999999999999875
Q ss_pred CCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHH
Q 007193 193 VKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270 (613)
Q Consensus 193 ~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 270 (613)
.|+ ...|-.|-..|...+.+++|...+.+.... .|+ .+++..+...|-..|.++.|+..+++..+.. +.-+.
T Consensus 248 -dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l----rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~ 321 (966)
T KOG4626|consen 248 -DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL----RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPD 321 (966)
T ss_pred -CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc----CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchH
Confidence 555 557888999999999999999999888753 454 6677888888999999999999999998875 44478
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 007193 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350 (613)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 350 (613)
.|+.|..++-..|+..+|.+.+......... -....+.|...|...|.+++|..+|.....-. +--....+.|...|-
T Consensus 322 Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~k 399 (966)
T KOG4626|consen 322 AYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYK 399 (966)
T ss_pred HHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHH
Confidence 9999999999999999999999999886433 45678889999999999999999999887763 333567889999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHH
Q 007193 351 NAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVG 428 (613)
Q Consensus 351 ~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 428 (613)
+.|++++|...+++..+ ++|+ ..+|+.+...|-..|+.+.|++.+.+.+. +.|. ...++.|...+...|++.+|
T Consensus 400 qqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~A 475 (966)
T KOG4626|consen 400 QQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEA 475 (966)
T ss_pred hcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHH
Confidence 99999999999999887 4677 57899999999999999999999999887 4675 46788999999999999999
Q ss_pred HHHHHHHHHcCCCCCH
Q 007193 429 LMLLSQAKEDGVIPNL 444 (613)
Q Consensus 429 ~~~~~~m~~~g~~p~~ 444 (613)
++-++..++ ++||.
T Consensus 476 I~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 476 IQSYRTALK--LKPDF 489 (966)
T ss_pred HHHHHHHHc--cCCCC
Confidence 999999988 55663
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=1.3e-16 Score=171.38 Aligned_cols=393 Identities=12% Similarity=0.039 Sum_probs=275.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChH
Q 007193 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSE 109 (613)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~ 109 (613)
+.+.+.|++++|+..|++..+.. |. ..++..+...+...|++++|+..+.+.. +.+...|..+..++...|+++
T Consensus 135 ~~~~~~~~~~~Ai~~y~~al~~~--p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 135 NKAYRNKDFNKAIKLYSKAIECK--PD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC--Cc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Confidence 45558899999999999998765 43 4566677788888899999999998754 456778889999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC---------------------------CCCCCH
Q 007193 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA---------------------------GIEPNV 162 (613)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------------------------g~~~~~ 162 (613)
+|+.-|......+ ..+......++..+........+...++.-... ...+..
T Consensus 212 eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (615)
T TIGR00990 212 DALLDLTASCIID-GFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEET 290 (615)
T ss_pred HHHHHHHHHHHhC-CCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccccc
Confidence 9998887665443 112111111111111110011111111100000 000000
Q ss_pred -HHHHHHHHH---HHhcCCHHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-HH
Q 007193 163 -HTYGALIDG---CAKAGQVAKAFGAYGIMRSKN-VKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HI 235 (613)
Q Consensus 163 -~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~ 235 (613)
..+..+... ....+++++|.+.|++....+ ..| +...|+.+...+...|++++|...|++.... .|+ ..
T Consensus 291 ~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l----~P~~~~ 366 (615)
T TIGR00990 291 GNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL----DPRVTQ 366 (615)
T ss_pred ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCcHH
Confidence 000001000 012367889999999988764 233 3456777778888899999999999998763 344 55
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007193 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (613)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 315 (613)
.|..+...+...|++++|...|++..+.+ +.+..+|..+...+...|++++|...|++..+.... +...+..+...+.
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~ 444 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHH
Confidence 77788888889999999999999888775 556788899999999999999999999998887543 5667777888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHcCCC
Q 007193 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV------STMNALITALCDGDQ 389 (613)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~~~li~~~~~~g~ 389 (613)
+.|++++|...++...+.. +.+...++.+...+...|++++|.+.|++..+.....+. ..++.....+...|+
T Consensus 445 ~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~ 523 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQD 523 (615)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhh
Confidence 9999999999999988763 556788888999999999999999999988765321111 112222333445689
Q ss_pred hhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 007193 390 LPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKED 438 (613)
Q Consensus 390 ~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (613)
+++|.+++++.... .| +...+..+...+...|++++|...|++..+.
T Consensus 524 ~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 524 FIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999988774 35 4456888889999999999999999988763
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=2.8e-16 Score=171.76 Aligned_cols=397 Identities=10% Similarity=-0.002 Sum_probs=300.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhC---CCCCHHHHHHHHHHHHcCCChH
Q 007193 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSE 109 (613)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~ 109 (613)
......|+.++|++++.+..... |.....+..+...+...|++++|..+|++. .+.+...+..+...+...|+++
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~ 100 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYD 100 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 34458999999999999998744 555656777888889999999999999984 3556777888889999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (613)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (613)
+|+..++...+.. +.+.. +..+..++...|+.++|...++++.+.. +.+...+..+...+...+..+.|+..++...
T Consensus 101 eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~ 177 (765)
T PRK10049 101 EALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDAN 177 (765)
T ss_pred HHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCC
Confidence 9999999998874 55666 8889999999999999999999999874 4466667778888889999999999998776
Q ss_pred hCCCCCCH------HHHHHHHHHHH-----ccCCH---HHHHHHHHHHhhCCCCCCCCHH-HH----HHHHHHHHhcCCh
Q 007193 190 SKNVKPDR------VVFNALITACG-----QSGAV---DRAFDVLAEMNAEVHPVDPDHI-TI----GALMKACANAGQV 250 (613)
Q Consensus 190 ~~g~~p~~------~~~~~li~~~~-----~~g~~---~~a~~~~~~m~~~~~~~~~~~~-~~----~~ll~~~~~~g~~ 250 (613)
. .|+. .....++.... ..+++ ++|++.++.+.... ...|+.. .+ ...+..+...|++
T Consensus 178 ~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~-~~~p~~~~~~~~a~~d~l~~Ll~~g~~ 253 (765)
T PRK10049 178 L---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALW-HDNPDATADYQRARIDRLGALLARDRY 253 (765)
T ss_pred C---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhc-ccCCccchHHHHHHHHHHHHHHHhhhH
Confidence 4 2331 11222232222 12234 77888888887531 1223221 11 1113345677999
Q ss_pred HHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHH
Q 007193 251 DRAREVYKMIHKYNIK-GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP---DEVFLSALIDFAGHAGKVEAAFEI 326 (613)
Q Consensus 251 ~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~a~~~ 326 (613)
++|...|+.+.+.+-+ |+ ..-..+...|...|++++|+..|+++....... .......+..++...|++++|...
T Consensus 254 ~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~ 332 (765)
T PRK10049 254 KDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTV 332 (765)
T ss_pred HHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 9999999999887622 22 223335778999999999999999987654321 134566677788999999999999
Q ss_pred HHHHHHCCC-----------CcC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhH
Q 007193 327 LQEAKNQGI-----------SVG---IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392 (613)
Q Consensus 327 ~~~~~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 392 (613)
++.+..... .|+ ...+..+...+...|++++|.++++++.... +.+...+..+...+...|++++
T Consensus 333 l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~ 411 (765)
T PRK10049 333 TAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRA 411 (765)
T ss_pred HHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHH
Confidence 999987631 122 2345667788899999999999999998764 4567889999999999999999
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCH
Q 007193 393 TMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444 (613)
Q Consensus 393 A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~ 444 (613)
|++.+++.... .|+ ...+......+...|++++|..+++++++. .|+.
T Consensus 412 A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~ 460 (765)
T PRK10049 412 AENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQD 460 (765)
T ss_pred HHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCC
Confidence 99999998884 575 566667777889999999999999999973 4543
No 19
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.83 E-value=1.9e-15 Score=141.13 Aligned_cols=399 Identities=16% Similarity=0.193 Sum_probs=291.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh-----------------------------hhHHHHHHHH
Q 007193 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK-----------------------------SQKAIKEAFR 82 (613)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~-----------------------------~~~~~~~A~~ 82 (613)
.-.+|.+|.+..+.-+++.|..+|+ +-...+...+.+... +.|+ -|.
T Consensus 122 L~kmIS~~EvKDs~ilY~~m~~e~~-~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~--vAd- 197 (625)
T KOG4422|consen 122 LLKMISSREVKDSCILYERMRSENV-DVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA--VAD- 197 (625)
T ss_pred HHHHHhhcccchhHHHHHHHHhcCC-CCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc--HHH-
Confidence 3456789999999999999999986 333333333333211 1122 222
Q ss_pred HHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 007193 83 FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV 162 (613)
Q Consensus 83 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 162 (613)
++-+..+.+..++.+||.++++-...+.|.+++++......+.+..+||.+|.+-+-. ...++..+|....+.||.
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNL 273 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCch
Confidence 5555566788899999999999999999999999999887899999999999875443 337899999999999999
Q ss_pred HHHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHhhC--CCCC----C
Q 007193 163 HTYGALIDGCAKAGQVAK----AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR-AFDVLAEMNAE--VHPV----D 231 (613)
Q Consensus 163 ~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~--~~~~----~ 231 (613)
.|+|+++++.++.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++... +..+ +
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 999999999999998765 56788899999999999999999999999887644 44444444321 1112 2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 007193 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYN----IKGT---PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304 (613)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 304 (613)
.|..-|...+..|.+..+.+.|.++...+.... +.|+ ..-|..+....|+....+.-...++.|.-.-..|+.
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~ 433 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHS 433 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCc
Confidence 345667788899999999999999887765432 2222 233667888889999999999999999988888999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcC-C--------H-----HHHHHHHH-------
Q 007193 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK-N--------W-----QKALELYE------- 363 (613)
Q Consensus 305 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~--------~-----~~A~~~~~------- 363 (613)
.+...++++..-.+.++-..+++..++..|..-+.....-++..+++.. . + +-|..+++
T Consensus 434 ~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~ 513 (625)
T KOG4422|consen 434 QTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPI 513 (625)
T ss_pred hhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999999999999999999888775555555555555555443 1 0 01111221
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC----CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 007193 364 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG----LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439 (613)
Q Consensus 364 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g 439 (613)
++.+. .......+...-.+.+.|+.++|.++|....++| ..|......-++++.....+...|..+++.|...+
T Consensus 514 R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 514 RQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 22222 3445566777777888999999999988886544 22344444466677777888888888888886654
Q ss_pred C
Q 007193 440 V 440 (613)
Q Consensus 440 ~ 440 (613)
.
T Consensus 592 ~ 592 (625)
T KOG4422|consen 592 L 592 (625)
T ss_pred c
Confidence 3
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.82 E-value=3.5e-15 Score=160.32 Aligned_cols=221 Identities=13% Similarity=-0.006 Sum_probs=140.5
Q ss_pred CCHHHHHHHHHHHhhCCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007193 211 GAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (613)
Q Consensus 211 g~~~~a~~~~~~m~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 289 (613)
+++++|.+.|+...... ...| +...+..+...+...|++++|...|++..+.. +.....|..+...+...|++++|.
T Consensus 308 ~~y~~A~~~~~~al~~~-~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 308 ESYEEAARAFEKALDLG-KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 45667777777766432 1122 34456666666777777777777777776654 334556777777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007193 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (613)
Q Consensus 290 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 369 (613)
..|++..+.... +...+..+...+...|++++|...|+...+.. +.+...+..+...+.+.|++++|...|++..+..
T Consensus 386 ~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 463 (615)
T TIGR00990 386 EDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF 463 (615)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 777777665432 45666777777777777777777777777664 4455666667777777777777777777766542
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH-H-------HHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 007193 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-I-------TYSILLVACERKDDVEVGLMLLSQAKED 438 (613)
Q Consensus 370 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~-------t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (613)
+.+...|+.+...+...|++++|++.|++..+. .|+. . .+...+..+...|++++|.+++++..+.
T Consensus 464 -P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 464 -PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII 537 (615)
T ss_pred -CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 234566777777777777777777777776653 2221 1 1111112233357777777777776653
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.80 E-value=1.4e-14 Score=155.51 Aligned_cols=442 Identities=13% Similarity=0.105 Sum_probs=304.9
Q ss_pred ccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchH-HHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHH-HHH-
Q 007193 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDK-VYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF-NML- 98 (613)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~l- 98 (613)
|..+.......-...++|+++.|++.|++..+.. |.+. .++ -++.++...|+.++|+.++++...|+...+ ..+
T Consensus 31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~lla 107 (822)
T PRK14574 31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLAS 107 (822)
T ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHH
Confidence 3333333333334449999999999999999987 5542 223 555666677999999999999876644433 333
Q ss_pred -HHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007193 99 -MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (613)
Q Consensus 99 -i~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 177 (613)
...+...|++++|+++++.+.+.. +.+...+..++..+...++.++|++.++++... .|+...+..++..+...++
T Consensus 108 lA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~ 184 (822)
T PRK14574 108 AARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDR 184 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcch
Confidence 457888899999999999999875 555777888899999999999999999999876 5666666555444544666
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHH------HHHHHHH-----Hh
Q 007193 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI------GALMKAC-----AN 246 (613)
Q Consensus 178 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~------~~ll~~~-----~~ 246 (613)
..+|+..++++.+.. +-+...+..+..++.+.|-...|.++..+-.. -+.+....+ ..+++.- ..
T Consensus 185 ~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~---~f~~~~~~~l~~~~~a~~vr~a~~~~~~~ 260 (822)
T PRK14574 185 NYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPN---LVSAEHYRQLERDAAAEQVRMAVLPTRSE 260 (822)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc---ccCHHHHHHHHHHHHHHHHhhcccccccc
Confidence 667999999999873 34566778888999999999888887765332 112211111 1111100 01
Q ss_pred cCC---hHHHHHHHHHHHhcC--CCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007193 247 AGQ---VDRAREVYKMIHKYN--IKGTPEVY----TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317 (613)
Q Consensus 247 ~g~---~~~A~~~~~~~~~~~--~~~~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 317 (613)
..+ .+.|..-++.+...- .++....| --.+-++...|++.++++.|+.+...+......+-..+.++|...
T Consensus 261 ~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~ 340 (822)
T PRK14574 261 TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDR 340 (822)
T ss_pred hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhc
Confidence 122 344555556555421 12221222 234566788899999999999999887543456788889999999
Q ss_pred CCHHHHHHHHHHHHHCC-----CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------------CCCCH-HHHH
Q 007193 318 GKVEAAFEILQEAKNQG-----ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK-------------LKPTV-STMN 378 (613)
Q Consensus 318 g~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------------~~~~~-~~~~ 378 (613)
+++++|..++..+.... .+++......|.-+|...+++++|..+++.+.+.. ..||- ..+.
T Consensus 341 ~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~ 420 (822)
T PRK14574 341 RLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQT 420 (822)
T ss_pred CCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHH
Confidence 99999999999986653 23344456788889999999999999999987621 12232 2344
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHH--
Q 007193 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV-MFKCIIGMCS-- 455 (613)
Q Consensus 379 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~-- 455 (613)
.++..+...|+..+|.+.++++.... +-|......+.+.+...|.+.+|++.++.... +.|+.. +.........
T Consensus 421 l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l 497 (822)
T PRK14574 421 LLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMAL 497 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhh
Confidence 56677888999999999999987752 44778888888999999999999999976665 345532 2222222222
Q ss_pred hhHHHHHHhhhhhhcccCCCc
Q 007193 456 RRYEKARTLNEHVLSFNSGRP 476 (613)
Q Consensus 456 ~~~~~a~~~~~~~~~~~~~~~ 476 (613)
+.+.+|..+.+......|..+
T Consensus 498 ~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 498 QEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred hhHHHHHHHHHHHHhhCCCch
Confidence 257777777766655555433
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.78 E-value=1.2e-14 Score=158.97 Aligned_cols=394 Identities=12% Similarity=0.076 Sum_probs=284.3
Q ss_pred HHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 007193 67 FFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143 (613)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 143 (613)
.+.+..-.|+.++|++++.+.. +.+...+..+...+...|++++|..+++...+.. +.+...+..+...+...|++
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence 4455666788999999998754 3455568999999999999999999999988764 55677788899999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 007193 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (613)
Q Consensus 144 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 223 (613)
++|...+++..+.. +.+.. +..+...+...|+.++|+..++++.+.. +.+...+..+..++...+..++|.+.++..
T Consensus 100 ~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 100 DEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 99999999998773 44566 8889999999999999999999999873 334556667788888899999999998876
Q ss_pred hhCCCCCCCCH------HHHHHHHHHHH-----hcCCh---HHHHHHHHHHHhc-CCCCCH-HHH----HHHHHHHHhcC
Q 007193 224 NAEVHPVDPDH------ITIGALMKACA-----NAGQV---DRAREVYKMIHKY-NIKGTP-EVY----TIAINCCSQTG 283 (613)
Q Consensus 224 ~~~~~~~~~~~------~~~~~ll~~~~-----~~g~~---~~A~~~~~~~~~~-~~~~~~-~~~----~~li~~~~~~g 283 (613)
.. .|+. .....++..+. ..+++ ++|.+.++.+.+. ...|+. ..+ ...+..+...|
T Consensus 177 ~~-----~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g 251 (765)
T PRK10049 177 NL-----TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD 251 (765)
T ss_pred CC-----CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh
Confidence 53 2331 11222222222 12234 6788888888754 112221 111 11134556779
Q ss_pred CHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc---CHHhHHHHHHHHHhcCCHHHHH
Q 007193 284 DWEFACSVYDDMTKKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV---GIISYSSLMGACSNAKNWQKAL 359 (613)
Q Consensus 284 ~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~ 359 (613)
++++|+..|+.+.+.+.. |+. ....+..+|...|++++|...|+.+.+..... .......+..++...|++++|.
T Consensus 252 ~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~ 330 (765)
T PRK10049 252 RYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGAL 330 (765)
T ss_pred hHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHH
Confidence 999999999999987642 433 22235678999999999999999987654211 1345666777889999999999
Q ss_pred HHHHHHHhCCC-----------CCC---HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCH
Q 007193 360 ELYEHMKSIKL-----------KPT---VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425 (613)
Q Consensus 360 ~~~~~m~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 425 (613)
.+++.+.+... .|+ ...+..+...+...|+.++|+++++++... .+-+...+..+...+...|++
T Consensus 331 ~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~ 409 (765)
T PRK10049 331 TVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGWP 409 (765)
T ss_pred HHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCH
Confidence 99999886421 123 234556778889999999999999999875 244667788888999999999
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHH--hhHHHHHHhhhhhhcccC
Q 007193 426 EVGLMLLSQAKEDGVIPNL-VMFKCIIGMCS--RRYEKARTLNEHVLSFNS 473 (613)
Q Consensus 426 ~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~--~~~~~a~~~~~~~~~~~~ 473 (613)
++|++.+++..+ +.|+. ..+......+. +++++|..+.+......+
T Consensus 410 ~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 410 RAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 999999999987 34653 22222222222 267777666655544333
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.74 E-value=2.2e-12 Score=141.66 Aligned_cols=417 Identities=10% Similarity=0.032 Sum_probs=195.9
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007193 99 MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK-SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (613)
Q Consensus 99 i~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 177 (613)
.+.|.+.+++++|+.++..+.+.+ +.+..-...|-.+|.. .++ +++..++.. .+..+...+..+...|.+.|+
T Consensus 189 ~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~ 262 (987)
T PRK09782 189 LQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGE 262 (987)
T ss_pred HHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCC
Confidence 566666777777777777777665 3344445555556665 355 556555443 123466777777778888888
Q ss_pred HHHHHHHHHHHHhCCC-CCCHHHHHHH------------------------------HHHHHccCCHHHHHHHHH-----
Q 007193 178 VAKAFGAYGIMRSKNV-KPDRVVFNAL------------------------------ITACGQSGAVDRAFDVLA----- 221 (613)
Q Consensus 178 ~~~A~~~~~~m~~~g~-~p~~~~~~~l------------------------------i~~~~~~g~~~~a~~~~~----- 221 (613)
.++|..+++++...-. .|...+|.-+ +..+.+.++++.+.++..
T Consensus 263 ~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (987)
T PRK09782 263 KARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPAN 342 (987)
T ss_pred HHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcc
Confidence 8888877777654311 1222222111 222233333333333211
Q ss_pred ------------------------HHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCCHHHHHHH
Q 007193 222 ------------------------EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY--NIKGTPEVYTIA 275 (613)
Q Consensus 222 ------------------------~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l 275 (613)
.|-+. .+-+......+.-...+.|+.++|.++|+..... +...+....+-+
T Consensus 343 ~~~~~r~~~~~~~~~~~~~~~~~~~~y~~---~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l 419 (987)
T PRK09782 343 EMLEERYAVSVATRNKAEALRLARLLYQQ---EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARL 419 (987)
T ss_pred hHHHHHHhhccccCchhHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHH
Confidence 01000 0112222222223345667777777777665442 112223333344
Q ss_pred HHHHHhcC-------------------------CHHHHHHHHHHHHHC-CC-CC--CHHHHHHHHHHHHhcCCHHHHHHH
Q 007193 276 INCCSQTG-------------------------DWEFACSVYDDMTKK-GV-IP--DEVFLSALIDFAGHAGKVEAAFEI 326 (613)
Q Consensus 276 i~~~~~~g-------------------------~~~~a~~~~~~m~~~-g~-~p--~~~~~~~li~~~~~~g~~~~a~~~ 326 (613)
+..|...+ +..++.......... +. .+ +...|..+..++.. ++.++|...
T Consensus 420 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a 498 (987)
T PRK09782 420 ASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYA 498 (987)
T ss_pred HHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHH
Confidence 44444332 222222222222221 11 12 34444555444444 566666665
Q ss_pred HHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCC
Q 007193 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406 (613)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 406 (613)
+....... |+......+...+...|++++|...|+++... .|+...+..+...+.+.|++++|...+++..+.. +
T Consensus 499 ~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P 573 (987)
T PRK09782 499 WLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-L 573 (987)
T ss_pred HHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-C
Confidence 55554442 33333223333344666666666666665432 2333445555555666666666666666665532 1
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--hHHHHHHhhhhhhcccCCCcccc-----
Q 007193 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIE----- 479 (613)
Q Consensus 407 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~~~----- 479 (613)
++...+..+.......|++++|...+++.++ ..|+...+..+-.++.+ ++++|....+.....++..+..-
T Consensus 574 ~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~ 651 (987)
T PRK09782 574 GDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGY 651 (987)
T ss_pred ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 2222232333334445666666666666665 33444445444444433 44444444333333332221100
Q ss_pred ----hhhhHHHHHHHHHHHHcCCCCcHHHHHHHHhcc--CCCCchhHHhhHHHhhCCChhh
Q 007193 480 ----NKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL--QLPYNADIRERLVENLGVSADA 534 (613)
Q Consensus 480 ----~~~~~~a~~~~~~m~~~g~~p~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~ 534 (613)
.+....|+..|++.++ ..|+...+...++.+ ..+.-.+....+.+...+.|+.
T Consensus 652 aL~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 652 ALWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 0111235555555544 356665444444332 2333344444555555566654
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.73 E-value=2e-13 Score=140.43 Aligned_cols=466 Identities=12% Similarity=0.073 Sum_probs=287.5
Q ss_pred cccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHH---HHHHHHHHHhhhHHHHHHHHHHHhCC--CCCHHHH
Q 007193 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKV---YHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTF 95 (613)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~ 95 (613)
+++++..-.+..|.+.-.|++..++.+.+.+..... ...+ -+..+++.+-..|++++|..+|-+.. .+|.+++
T Consensus 266 n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~--~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l 343 (1018)
T KOG2002|consen 266 NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE--NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVL 343 (1018)
T ss_pred cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccc
Confidence 456667777777888888999999998888877652 2222 24456777788889999998887644 2333333
Q ss_pred --HHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----ChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007193 96 --NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG----KVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (613)
Q Consensus 96 --~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~g~~~~~~~~~~li 169 (613)
--+...+...|+++.+...|+.+.+.. +.+..+...|...|...+ ..+.|..+..+..+.- +.|...|-.+.
T Consensus 344 ~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~la 421 (1018)
T KOG2002|consen 344 PLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELA 421 (1018)
T ss_pred cccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHH
Confidence 345677888888888888888887763 445566666666666554 3455555555544332 33444555444
Q ss_pred HHHHhcCCHHHHHHHHHHH----HhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC-CC--------------
Q 007193 170 DGCAKAGQVAKAFGAYGIM----RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH-PV-------------- 230 (613)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~-------------- 230 (613)
..+-...-+ .++.+|... ...+.++.....|.+...+...|+++.|...|........ ..
T Consensus 422 ql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~Y 500 (1018)
T KOG2002|consen 422 QLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKY 500 (1018)
T ss_pred HHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHH
Confidence 444333222 224443332 2233334455555555555555555555555554433200 01
Q ss_pred -------------------------CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 007193 231 -------------------------DPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284 (613)
Q Consensus 231 -------------------------~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 284 (613)
.|. +..|--++.+....+...+|...+......+ ..++..++.+...+.+...
T Consensus 501 Nlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 501 NLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhh
Confidence 121 1112222222222345566666666666654 5566777777778888877
Q ss_pred HHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHh
Q 007193 285 WEFACSVYDDMTKK-GVIPDEVFLSALIDFAGH------------AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (613)
Q Consensus 285 ~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 351 (613)
+..|.+-|...... ...+|..+.-+|.+.|.+ .+..++|+++|.++.+.. +-|...-|.+.-.++.
T Consensus 580 ~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAE 658 (1018)
T ss_pred hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhh
Confidence 77777766665543 223566666666665543 235678889999888875 6678888888888999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhhcCCHHHHHH
Q 007193 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS-LGLCPNTITYSILLVACERKDDVEVGLM 430 (613)
Q Consensus 352 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 430 (613)
.|++.+|..+|.++.+... ....+|-.+.++|...|++..|+++|+...+ .+-.-+......|..++...|.+.+|.+
T Consensus 659 kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~ 737 (1018)
T KOG2002|consen 659 KGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKE 737 (1018)
T ss_pred ccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHH
Confidence 9999999999999987542 3456788889999999999999999988544 4434467778888899999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhhHHHHHHhhhhhhcccCCCc---ccchhhhHHHHHHHHHHHHcCCCCcH
Q 007193 431 LLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRP---QIENKWTSLALMVYREAIVAGTIPTV 502 (613)
Q Consensus 431 ~~~~m~~~g~~p~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~a~~~~~~m~~~g~~p~~ 502 (613)
..-.....-..-..+.+|..+-+ ...|..+.+. ..+.. .....-...|.++|.+|...+-.|=.
T Consensus 738 ~ll~a~~~~p~~~~v~FN~a~v~----kkla~s~lr~----~k~t~eev~~a~~~le~a~r~F~~ls~~~d~r~~ 804 (1018)
T KOG2002|consen 738 ALLKARHLAPSNTSVKFNLALVL----KKLAESILRL----EKRTLEEVLEAVKELEEARRLFTELSKNGDKRIS 804 (1018)
T ss_pred HHHHHHHhCCccchHHhHHHHHH----HHHHHHHHhc----ccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 88877764444444556655433 1112211110 01000 01112223588999999887755433
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.72 E-value=9.8e-12 Score=136.61 Aligned_cols=432 Identities=14% Similarity=0.063 Sum_probs=284.6
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhh-hHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCC
Q 007193 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS-QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSK 106 (613)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 106 (613)
.......+.+.|++++|+.++.++.+.+ +.+......+..++.. .++ ++|..+++.....++..+..+...+.+.|
T Consensus 185 ~L~~~rlY~~l~dw~~Ai~lL~~L~k~~--pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G 261 (987)
T PRK09782 185 RTDLLQRAIYLKQWSQADTLYNEARQQN--TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRG 261 (987)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCC
Confidence 3333566778999999999999999998 4555555556666666 366 88888877655678899999999999999
Q ss_pred ChHHHHHHHHHHHHcCCC-CCHHHH------------------------------HHHHHHHHHcCChhHHHHHHH----
Q 007193 107 DSEGAFQVLRLVQEAGLK-ADCKLY------------------------------TTLITTCAKSGKVDAMFEVFH---- 151 (613)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~-~~~~~~------------------------------~~li~~~~~~g~~~~a~~~~~---- 151 (613)
+.++|.++++.+...-.. |+..+| -.++..+.+.++++.+.++.+
T Consensus 262 ~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (987)
T PRK09782 262 EKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPA 341 (987)
T ss_pred CHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCc
Confidence 999999999988643211 222222 122455556666665554422
Q ss_pred -------------------------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C-CCCCHHHHHHHH
Q 007193 152 -------------------------EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-N-VKPDRVVFNALI 204 (613)
Q Consensus 152 -------------------------~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g-~~p~~~~~~~li 204 (613)
.|.+.. +-+....-.+--...+.|+.++|.++|+..... + -.++...-.-++
T Consensus 342 ~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~ 420 (987)
T PRK09782 342 NEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLA 420 (987)
T ss_pred chHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHH
Confidence 111110 112223333333455678888999998888762 1 223344444667
Q ss_pred HHHHccCC---HHHHHHH----------------------HHHHhhCCCCCCC--CHHHHHHHHHHHHhcCChHHHHHHH
Q 007193 205 TACGQSGA---VDRAFDV----------------------LAEMNAEVHPVDP--DHITIGALMKACANAGQVDRAREVY 257 (613)
Q Consensus 205 ~~~~~~g~---~~~a~~~----------------------~~~m~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~A~~~~ 257 (613)
..|.+.+. ..++..+ ...........++ +...+..+..++.. ++.++|...+
T Consensus 421 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~ 499 (987)
T PRK09782 421 SLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAW 499 (987)
T ss_pred HHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHH
Confidence 77766655 2222222 1111111011133 55667777776666 7888899988
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 007193 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337 (613)
Q Consensus 258 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 337 (613)
.+..... |+......+...+...|++++|...|+++... .|+...+..+...+.+.|+.++|...++...+.. +.
T Consensus 500 ~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~ 574 (987)
T PRK09782 500 LQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LG 574 (987)
T ss_pred HHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-Cc
Confidence 7776654 44333334445556889999999999987654 3344456666778888999999999999988765 33
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHH
Q 007193 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILL 416 (613)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll 416 (613)
+...+..+.....+.|++++|...+++..+. .|+...|..+...+.+.|++++|+..+++.... .| +...+..+.
T Consensus 575 ~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG 650 (987)
T PRK09782 575 DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALG 650 (987)
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 3344444444455669999999999998875 467888888999999999999999999998875 45 456677777
Q ss_pred HHHhhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh--hHHHHHHhhhhhhcccCCC
Q 007193 417 VACERKDDVEVGLMLLSQAKEDGVIPN-LVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGR 475 (613)
Q Consensus 417 ~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~ 475 (613)
.++...|+.++|+..+++..+. .|+ ...+..+-.++.. ++++|....+.....++..
T Consensus 651 ~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 651 YALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 7889999999999999998874 343 3334444444333 5667766655554444443
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.71 E-value=1.8e-12 Score=139.35 Aligned_cols=415 Identities=10% Similarity=0.059 Sum_probs=288.0
Q ss_pred HHhhhHHHHHHHHHHHhCCC--CCH-HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHH
Q 007193 70 VCKSQKAIKEAFRFFKLVPN--PTL-STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146 (613)
Q Consensus 70 ~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 146 (613)
...+.|+++.|+..|.+... |+. .....++..+...|+.++|+..+++..... +........+...|...|++++|
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 35577889999999998763 332 123388888889999999999999988221 33344444456688889999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 007193 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (613)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 226 (613)
.++|+++.+.. +.+...+..++..|...++.++|++.++++... .|+...+..++..+...++..+|++.++++...
T Consensus 122 iely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 122 LALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 99999999875 445677788889999999999999999999876 666666644544454466666799999999875
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHH------HHHHHH-----HHhcCCH---HHHHHHH
Q 007193 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY------TIAINC-----CSQTGDW---EFACSVY 292 (613)
Q Consensus 227 ~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------~~li~~-----~~~~g~~---~~a~~~~ 292 (613)
. +.+...+..+..+..+.|-...|.++...-+..- .+....+ ..++.. -....++ +.|+.-+
T Consensus 199 ~---P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~ 274 (822)
T PRK14574 199 A---PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADY 274 (822)
T ss_pred C---CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 2 4456777888899999999999988776544221 1111111 111110 0112333 3444555
Q ss_pred HHHHHC-CCCCCH-HHH-H---HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 293 DDMTKK-GVIPDE-VFL-S---ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (613)
Q Consensus 293 ~~m~~~-g~~p~~-~~~-~---~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (613)
+.+... +..|.. ..| . =-+-++...|+..++++.++.+...+.+....+-..+.++|...+++++|..+|+.+.
T Consensus 275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~ 354 (822)
T PRK14574 275 QNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLY 354 (822)
T ss_pred HHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 554441 222322 222 2 2344778889999999999999998876667788999999999999999999999986
Q ss_pred hCC-----CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC-------------CCCCHHH-HHHHHHHHhhcCCHHH
Q 007193 367 SIK-----LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-------------LCPNTIT-YSILLVACERKDDVEV 427 (613)
Q Consensus 367 ~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-------------~~p~~~t-~~~ll~a~~~~g~~~~ 427 (613)
... ..++......|..+|...+++++|..+++.+.+.- ..||-.. +..++..+...|++.+
T Consensus 355 ~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~ 434 (822)
T PRK14574 355 YSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPT 434 (822)
T ss_pred hccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHH
Confidence 542 12345556789999999999999999999998731 1123333 4455677899999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHh--hHHHHHHhhhhhhcccCCCcc--cchhhhHHHHHHHHHH
Q 007193 428 GLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQ--IENKWTSLALMVYREA 493 (613)
Q Consensus 428 a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~~~m 493 (613)
|.+.++.+... -+-|......+-+.+.. ...+|.++.+.....++.... ...+++.+++.=|+++
T Consensus 435 Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A 503 (822)
T PRK14574 435 AQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQM 503 (822)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHH
Confidence 99999999864 23355556666665554 688888888776666554322 2234444444334433
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.67 E-value=1.6e-12 Score=133.93 Aligned_cols=426 Identities=12% Similarity=0.089 Sum_probs=302.9
Q ss_pred CcccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhH----HHHHHHHHHHhCC---CCCH
Q 007193 20 NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK----AIKEAFRFFKLVP---NPTL 92 (613)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~~~~~---~~~~ 92 (613)
+..+..-+.+-.-...|++|++++|...|+.+.+.. |++..+..+++..+...+ ..+.|..+..+.. +.|+
T Consensus 337 ~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~--p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~ 414 (1018)
T KOG2002|consen 337 DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL--PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDS 414 (1018)
T ss_pred CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC--cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccH
Confidence 333445666666777889999999999999999887 777777777777666543 5577777777654 3466
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC---CCCCCH---
Q 007193 93 STFNMLMSVCASSKDSEGAFQVLRLV----QEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA---GIEPNV--- 162 (613)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m----~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~~~~--- 162 (613)
..|-.+...+-.. +...++..+... ...+-.+.+...|.+...+...|+++.|...|+..... ...+|.
T Consensus 415 ~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~ 493 (1018)
T KOG2002|consen 415 EAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKS 493 (1018)
T ss_pred HHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccccc
Confidence 6777666665544 444446666544 34555677889999999999999999999999887654 112333
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHH
Q 007193 163 ---HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV-VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238 (613)
Q Consensus 163 ---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 238 (613)
.+--.+...+-..++++.|.+.|...... .|.-+ .|.-+.......+...+|...+...... ...+...++
T Consensus 494 ~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~---d~~np~ars 568 (1018)
T KOG2002|consen 494 TNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI---DSSNPNARS 568 (1018)
T ss_pred chhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc---ccCCcHHHH
Confidence 22233455666778999999999999876 45533 3333333333447788899999888763 244455666
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhc------------CCHHHHHHHHHHHHHCCCCCCHH
Q 007193 239 ALMKACANAGQVDRAREVYKMIHKYN-IKGTPEVYTIAINCCSQT------------GDWEFACSVYDDMTKKGVIPDEV 305 (613)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~------------g~~~~a~~~~~~m~~~g~~p~~~ 305 (613)
.+...+.+...+..|.+-|..+.+.- ..+|+.+.-+|.+.|.+. +..++|+++|.+.++..+. |..
T Consensus 569 l~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~y 647 (1018)
T KOG2002|consen 569 LLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMY 647 (1018)
T ss_pred HHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhh
Confidence 67778888889999998777665542 235666666676655432 4578899999999988765 778
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 007193 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI-KLKPTVSTMNALITAL 384 (613)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~ 384 (613)
.-+-+.-.++..|++.+|..+|.++.+.. .....+|-.+.++|..+|++..|.++|+...+. ....+......|..++
T Consensus 648 AANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~ 726 (1018)
T KOG2002|consen 648 AANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAW 726 (1018)
T ss_pred hccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 88888888999999999999999998875 235668889999999999999999999987653 3345678889999999
Q ss_pred HcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH------------------HhhcCCHHHHHHHHHHHHHcCCC-CCHH
Q 007193 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA------------------CERKDDVEVGLMLLSQAKEDGVI-PNLV 445 (613)
Q Consensus 385 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a------------------~~~~g~~~~a~~~~~~m~~~g~~-p~~~ 445 (613)
.+.|.+.+|.+.+......-..-..+.|+..+-. -...+..+.|.++|.++.+.+-. -+..
T Consensus 727 y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~r~~~~ 806 (1018)
T KOG2002|consen 727 YEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDKRISKT 806 (1018)
T ss_pred HHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHH
Confidence 9999999999998887764222233445544421 12245677899999999876544 3444
Q ss_pred HHHHHHHHHH
Q 007193 446 MFKCIIGMCS 455 (613)
Q Consensus 446 ~~~~li~~~~ 455 (613)
....-+..|.
T Consensus 807 ~~~~~a~~c~ 816 (1018)
T KOG2002|consen 807 VIAQEAQLCK 816 (1018)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=9.6e-12 Score=116.75 Aligned_cols=314 Identities=21% Similarity=0.268 Sum_probs=234.2
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--cCChhHH-HHHHHHHHHCC----------
Q 007193 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK--SGKVDAM-FEVFHEMVNAG---------- 157 (613)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~--~g~~~~a-~~~~~~m~~~g---------- 157 (613)
.+++=|.|++. ..+|.+..+.-+++.|...|++.+...-..|+..-+- ..++.-| ++.|-.|...|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence 34566666654 4567888999999999999988887776666654332 2222111 12222222111
Q ss_pred ---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC
Q 007193 158 ---------IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228 (613)
Q Consensus 158 ---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 228 (613)
.+.+..|+.+||.+.|+-...+.|.+++++-.+...+.+..+||.+|.+-.-.. ..+++.+|...
T Consensus 194 ~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisq-- 267 (625)
T KOG4422|consen 194 AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQ-- 267 (625)
T ss_pred cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHh--
Confidence 255778999999999999999999999999988877899999999997654332 26788888875
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHH----HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH----CC
Q 007193 229 PVDPDHITIGALMKACANAGQVDRA----REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF-ACSVYDDMTK----KG 299 (613)
Q Consensus 229 ~~~~~~~~~~~ll~~~~~~g~~~~A----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~----~g 299 (613)
.+.||..|+|+++.+.++.|+++.| .+++.+|++.|+.|+..+|..+|..+++.++..+ |..++.++.. +.
T Consensus 268 km~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~ 347 (625)
T KOG4422|consen 268 KMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKT 347 (625)
T ss_pred hcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCc
Confidence 6799999999999999999987654 5677889999999999999999999999888754 4444444432 22
Q ss_pred CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCcC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007193 300 VIP----DEVFLSALIDFAGHAGKVEAAFEILQEAKNQG----ISVG---IISYSSLMGACSNAKNWQKALELYEHMKSI 368 (613)
Q Consensus 300 ~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (613)
++| |...|.+.+..|.+..+.+.|.++..-+.... +.|+ ..-|..+....|+....+.-...|+.|.-.
T Consensus 348 fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~ 427 (625)
T KOG4422|consen 348 FKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPS 427 (625)
T ss_pred ccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 333 55678888899999999999999988775431 2233 224567777888888899999999999877
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHH
Q 007193 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411 (613)
Q Consensus 369 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 411 (613)
-+-|+..+...++++..-.|+++-.-++|.++...|..-+...
T Consensus 428 ~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l 470 (625)
T KOG4422|consen 428 AYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDL 470 (625)
T ss_pred eecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHH
Confidence 6678888888888888888888888888888887664433333
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.65 E-value=4.9e-13 Score=125.97 Aligned_cols=409 Identities=14% Similarity=0.200 Sum_probs=276.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHh----CCCCC----HHHHHHHHHHHHcCCCh
Q 007193 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL----VPNPT----LSTFNMLMSVCASSKDS 108 (613)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~----~~~~~~li~~~~~~~~~ 108 (613)
-+....+|+..++-+.+...+|..-.+...++..+.+.+.+.+|+++|.. +|.-+ +...|.+.-.+.+.|++
T Consensus 213 ~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy 292 (840)
T KOG2003|consen 213 ANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQY 292 (840)
T ss_pred hhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccc
Confidence 46778899999999998888887777777777778888899999999864 34322 33455555568899999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC------------CCHHHHHHHH-----HH
Q 007193 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE------------PNVHTYGALI-----DG 171 (613)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~------------~~~~~~~~li-----~~ 171 (613)
+.|..-|+...+. .|+..+--.|+-++...|+-++..+.|.+|+..... |+....|.-| .-
T Consensus 293 ~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~ 370 (840)
T KOG2003|consen 293 DDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKN 370 (840)
T ss_pred hhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHH
Confidence 9999999988765 677766555666667789999999999999764322 3333333222 22
Q ss_pred HHhcC--CHHHHHHHHHHHHhCCCCCCHHH-------------HH--------HHHHHHHccCCHHHHHHHHHHHhhCCC
Q 007193 172 CAKAG--QVAKAFGAYGIMRSKNVKPDRVV-------------FN--------ALITACGQSGAVDRAFDVLAEMNAEVH 228 (613)
Q Consensus 172 ~~~~g--~~~~A~~~~~~m~~~g~~p~~~~-------------~~--------~li~~~~~~g~~~~a~~~~~~m~~~~~ 228 (613)
+-+.+ +.++++-.--++..--+.||-.. +. .-..-+.+.|+++.|.+++.-..++..
T Consensus 371 ~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdn 450 (840)
T KOG2003|consen 371 MEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDN 450 (840)
T ss_pred HHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccc
Confidence 22211 12222222222222222222100 00 112357888999988888876654321
Q ss_pred CCCCCHHHHHHHH------------------------------------HHHHhcCChHHHHHHHHHHHhcCCCCCHHHH
Q 007193 229 PVDPDHITIGALM------------------------------------KACANAGQVDRAREVYKMIHKYNIKGTPEVY 272 (613)
Q Consensus 229 ~~~~~~~~~~~ll------------------------------------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 272 (613)
... ...-+.|. +.....|++++|.+.+.+....+.......|
T Consensus 451 k~~--saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealf 528 (840)
T KOG2003|consen 451 KTA--SAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALF 528 (840)
T ss_pred hhh--HHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHH
Confidence 110 01111110 0011347788888888888776543333333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhc
Q 007193 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352 (613)
Q Consensus 273 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 352 (613)
| +.-.+-..|+.++|++.|-++...- .-+...+..+...|....+..+|.+++.+.... ++.|+.+..-|.+.|-+.
T Consensus 529 n-iglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqe 605 (840)
T KOG2003|consen 529 N-IGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQE 605 (840)
T ss_pred H-hcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcc
Confidence 3 3334567788999999887764421 125667777788888888899999888776554 577889999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-hhcCCHHHHHHH
Q 007193 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC-ERKDDVEVGLML 431 (613)
Q Consensus 353 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~~ 431 (613)
|+-.+|.+.+-.--+. ++-+..+..-|..-|.....+++|+..|++..- +.|+..-|..++..| .+.|++++|..+
T Consensus 606 gdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~ 682 (840)
T KOG2003|consen 606 GDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDL 682 (840)
T ss_pred cchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 9999998876554332 345677777788888888889999999998765 689999999888776 468999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHh
Q 007193 432 LSQAKEDGVIPNLVMFKCIIGMCSR 456 (613)
Q Consensus 432 ~~~m~~~g~~p~~~~~~~li~~~~~ 456 (613)
++...+. +..|......|+..++.
T Consensus 683 yk~~hrk-fpedldclkflvri~~d 706 (840)
T KOG2003|consen 683 YKDIHRK-FPEDLDCLKFLVRIAGD 706 (840)
T ss_pred HHHHHHh-CccchHHHHHHHHHhcc
Confidence 9988754 77788888888888764
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.60 E-value=2.5e-11 Score=124.42 Aligned_cols=366 Identities=13% Similarity=0.141 Sum_probs=274.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHcCCC
Q 007193 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL---VPNPTLSTFNMLMSVCASSKD 107 (613)
Q Consensus 31 ~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~~~ 107 (613)
-.|.+.-+|++++|..++.++.+.+ |.+...+..++.++.+.|+.++++..+-. ..+.|...|-.+.....+.|+
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhccc
Confidence 4455666799999999999999998 77888888899999999999999987754 346678899999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCCHHHHHH
Q 007193 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG----ALIDGCAKAGQVAKAFG 183 (613)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~----~li~~~~~~g~~~~A~~ 183 (613)
+++|.-.|.+.++.. +++...+---...|-+.|+...|..-|.++.+..-+.|..-.. ..+..+...++-+.|.+
T Consensus 223 i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 223 INQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999886 5665566667788999999999999999998874222222222 33455666777799999
Q ss_pred HHHHHHhCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhC-------------------------CCCCCCCHHHH
Q 007193 184 AYGIMRSKN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE-------------------------VHPVDPDHITI 237 (613)
Q Consensus 184 ~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------------------------~~~~~~~~~~~ 237 (613)
.++.....+ -..+...++.++..+.+...++.|......+... +.+..++..++
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 998887632 2334567888888899999999988877776541 01122233331
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007193 238 GALMKACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (613)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 315 (613)
-+.-++.+....+....+.......++ ..+...|.-+..+|...|++.+|+.+|..+......-+...|-.+..+|-
T Consensus 382 -rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 382 -RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred -hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 222334455555555666666666663 33466788999999999999999999999998766557788999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh--------CCCCCCHHHHHHHHHHHHcC
Q 007193 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS--------IKLKPTVSTMNALITALCDG 387 (613)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~~~~~~~~~li~~~~~~ 387 (613)
..|..++|.+.|....... +.+...--+|-..+-+.|+.++|.+.+..+.. .+..|+...--.....+.+.
T Consensus 461 ~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~ 539 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV 539 (895)
T ss_pred HHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence 9999999999999998875 55666777888889999999999999998652 22334444444455667778
Q ss_pred CChhHHHHHHHHHH
Q 007193 388 DQLPKTMEVLSDMK 401 (613)
Q Consensus 388 g~~~~A~~l~~~m~ 401 (613)
|+.++=+.....|.
T Consensus 540 gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 540 GKREEFINTASTLV 553 (895)
T ss_pred hhHHHHHHHHHHHH
Confidence 88777555555443
No 31
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=5.5e-10 Score=106.47 Aligned_cols=417 Identities=13% Similarity=0.098 Sum_probs=302.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChHHHHH
Q 007193 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQ 113 (613)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~ 113 (613)
.++++..|+.+|++...-+ ..+..+....+.+-.+++.+..|..++++.. +.-...|.-.+-.--..|++..|.+
T Consensus 85 sq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHH
Confidence 4778889999999998766 4455566666667778888999999999754 2223456666666667899999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C
Q 007193 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-N 192 (613)
Q Consensus 114 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g 192 (613)
+|++-.+. .|+...|++.|..-.+-..++.|..+|+...-- .|++.+|---...-.++|....|..+|+...+. |
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 99988765 899999999999999999999999999998754 699999999888888999999999999988754 2
Q ss_pred C-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC--HHHHHHHHHHHHhcCChHHHHHH--------HHHHH
Q 007193 193 V-KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD--HITIGALMKACANAGQVDRAREV--------YKMIH 261 (613)
Q Consensus 193 ~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~A~~~--------~~~~~ 261 (613)
- .-+...|++...-=.++..++.|.-+|.-.... ++.+ ...|......--+-|+.....+. ++.+.
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~---~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v 315 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDH---IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEV 315 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHH
Confidence 1 112233444444444567788888888877653 2333 34454444444445654433332 33444
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHH----H-HH---HhcCCHHHHHHHHHHHH
Q 007193 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE--VFLSALI----D-FA---GHAGKVEAAFEILQEAK 331 (613)
Q Consensus 262 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~li----~-~~---~~~g~~~~a~~~~~~~~ 331 (613)
+.+ +.|-.+|--.+..-...|+.+...++|+..... ++|-. ..|...| + +| ....+++.+.++++..+
T Consensus 316 ~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l 393 (677)
T KOG1915|consen 316 SKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL 393 (677)
T ss_pred HhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444 556678888888888889999999999998865 34421 1222221 1 11 24678899999999988
Q ss_pred HCCCCcCHHhHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 007193 332 NQGISVGIISYSSLMGACS----NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (613)
Q Consensus 332 ~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 407 (613)
+. +|-...|+.-+--+|+ ++.++..|.+++.... |.-|-..++-..|..-.+.+.++....++++.++.+ +-
T Consensus 394 ~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe 469 (677)
T KOG1915|consen 394 DL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PE 469 (677)
T ss_pred hh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hH
Confidence 84 4556667666555554 6788999999988765 456888899999999999999999999999998864 33
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHh--hHHHHHHhhhhh
Q 007193 408 NTITYSILLVACERKDDVEVGLMLLSQAKED-GVIPNLVMFKCIIGMCSR--RYEKARTLNEHV 468 (613)
Q Consensus 408 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~--~~~~a~~~~~~~ 468 (613)
|..+|.-....-...|+.+.|+.+|+-.+.. .++.....|.+.|+.=.. .+++|..+.+.+
T Consensus 470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerl 533 (677)
T KOG1915|consen 470 NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERL 533 (677)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHH
Confidence 7788988888888899999999999988864 344456667777764222 466666665543
No 32
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.6e-10 Score=109.90 Aligned_cols=258 Identities=15% Similarity=0.046 Sum_probs=126.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCC
Q 007193 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249 (613)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~ 249 (613)
.+|-...+.++++.-.+.....|++-+...-+....+.-...++++|+.+|+++.+..+=--.|..+|+.++-.-.....
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 33444445555555555555555444444333333444445555566666655554321111234445444422211111
Q ss_pred hH-HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007193 250 VD-RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328 (613)
Q Consensus 250 ~~-~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 328 (613)
+. .|..+++ +. +--+.|...+.+.|+-.++.++|...|++..+.+.. ....|+.+..-|....+...|.+-++
T Consensus 315 Ls~LA~~v~~-id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 315 LSYLAQNVSN-ID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred HHHHHHHHHH-hc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 11 1111111 11 111245555555555555555555555555555433 33445555555555555555555555
Q ss_pred HHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 007193 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (613)
Q Consensus 329 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 408 (613)
..++-+ +-|-..|-.|..+|.-.+...-|+-.|++..+.. +.|...|.+|..+|.+.++.++|++.|......| ..+
T Consensus 389 rAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte 465 (559)
T KOG1155|consen 389 RAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTE 465 (559)
T ss_pred HHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccc
Confidence 555554 4455555555555555555555555555555432 2345555555555555555555555555555433 224
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 007193 409 TITYSILLVACERKDDVEVGLMLLSQAK 436 (613)
Q Consensus 409 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 436 (613)
...+..+...+.+.++.++|.+.+++-+
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v 493 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYV 493 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4555555555555555555555555443
No 33
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.56 E-value=2.2e-14 Score=138.37 Aligned_cols=221 Identities=18% Similarity=0.170 Sum_probs=56.1
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH
Q 007193 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214 (613)
Q Consensus 135 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 214 (613)
..+...++.+.|.+.++++...+ +-+...+..++.. ...+++++|.++++...+. .++...+...+..+.+.++++
T Consensus 52 ~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~ 127 (280)
T PF13429_consen 52 DLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYD 127 (280)
T ss_dssp ----------------------------------------------------------------------H-HHHTT-HH
T ss_pred ccccccccccccccccccccccc-ccccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHH
Confidence 33334444444444444444332 1123333333333 3444444444444443332 123333444444444444444
Q ss_pred HHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007193 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294 (613)
Q Consensus 215 ~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 294 (613)
++.++++.+... ...+++...|..+...+.+.|+.++|.+.+++..+.. +.+....+.++..+...|+.+++.+++..
T Consensus 128 ~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~ 205 (280)
T PF13429_consen 128 EAEELLEKLEEL-PAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKR 205 (280)
T ss_dssp HHHHHHHHHHH--T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 444444443321 1122333444444444444444444444444444433 23344444444444444444444444444
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 007193 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363 (613)
Q Consensus 295 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (613)
..+.. ..|...+..+..+|...|+.++|+..++...+.. +.|+.+...+.+++...|+.++|.++..
T Consensus 206 ~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 206 LLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp HHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-------------
T ss_pred HHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence 33321 1122233444444444444444444444444432 3344444444444444444444444443
No 34
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.56 E-value=2.9e-11 Score=122.88 Aligned_cols=292 Identities=10% Similarity=-0.042 Sum_probs=177.8
Q ss_pred hhhHHHHHHHHHHHhCCC--CCH-HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 007193 72 KSQKAIKEAFRFFKLVPN--PTL-STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148 (613)
Q Consensus 72 ~~~~~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 148 (613)
...|+++.|.+.+.+... |+. ..+-....+..+.|+++.|.+.+....+....+...........+...|+++.|.+
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 345677777777766542 332 23333445566778888888888777654312222333445666777888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HccCCHHHHHHHHHHHhh
Q 007193 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC---GQSGAVDRAFDVLAEMNA 225 (613)
Q Consensus 149 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~---~~~g~~~~a~~~~~~m~~ 225 (613)
.++.+.+.. +.+..++..+...+.+.|++++|.+++..+.+.++.+.......-..++ ...+..+++.+.+..+..
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888877764 4466677777788888888888888888887775432222111111111 222222222333333333
Q ss_pred CCC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 007193 226 EVH-PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302 (613)
Q Consensus 226 ~~~-~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 302 (613)
... ..+.+...+..+...+...|+.+.|.+++++..+.. +++... ...........++.+.+.+.++...+..+.
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~- 331 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD- 331 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-
Confidence 210 112366677777778888888888888888777754 222211 111222223456777777777777665332
Q ss_pred CH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 303 DE--VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (613)
Q Consensus 303 ~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (613)
|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++..
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33 45667777888888888888888854443345777777788888888888888888887753
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.55 E-value=2.3e-09 Score=106.27 Aligned_cols=455 Identities=12% Similarity=0.075 Sum_probs=319.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC--------CCCHHHHHHHHH
Q 007193 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--------NPTLSTFNMLMS 100 (613)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~li~ 100 (613)
+..|-+|.+..-|+.|..++....+.= |.+..+......+-..+|+.+...++.++.. .-+...|-.=..
T Consensus 410 ~dLwlAlarLetYenAkkvLNkaRe~i--ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe 487 (913)
T KOG0495|consen 410 MDLWLALARLETYENAKKVLNKAREII--PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAE 487 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHH
Confidence 344555555555555555555555432 3333333333333344444444444443321 234445555555
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007193 101 VCASSKDSEGAFQVLRLVQEAGLKAD--CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178 (613)
Q Consensus 101 ~~~~~~~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 178 (613)
.|-..|..-.+..+.......|+... ..||+.-.+.|.+.+.++-|..+|...++.- +.+...|......--..|..
T Consensus 488 ~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~ 566 (913)
T KOG0495|consen 488 ACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTR 566 (913)
T ss_pred HHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcH
Confidence 66666666666666666666665432 4689999999999999999999999988753 55677888888777778999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 007193 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258 (613)
Q Consensus 179 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 258 (613)
++...+|++.... ++.....|-...+-+-..|++..|..++.+..+.. +.+...|-+-+..-....+++.|..+|.
T Consensus 567 Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~---pnseeiwlaavKle~en~e~eraR~lla 642 (913)
T KOG0495|consen 567 ESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN---PNSEEIWLAAVKLEFENDELERARDLLA 642 (913)
T ss_pred HHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC---CCcHHHHHHHHHHhhccccHHHHHHHHH
Confidence 9999999999876 34455667666777888899999999999887642 3356788888888999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 007193 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD-EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337 (613)
Q Consensus 259 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 337 (613)
+.... .|+..+|.--+..---.+..++|++++++..+. -|+ ...|-.+.+.+.+.++++.|...|..-.+. ++-
T Consensus 643 kar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~ 717 (913)
T KOG0495|consen 643 KARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPN 717 (913)
T ss_pred HHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCC
Confidence 88764 567788888888888889999999999998876 234 457788888999999999999998876655 355
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007193 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417 (613)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 417 (613)
.+..|-.|...-.+.|.+-.|..+|++..-.+ +.+...|-..|..-.+.|..+.|..+..+..+. ++-+...|.--|.
T Consensus 718 ~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~ 795 (913)
T KOG0495|consen 718 SIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIW 795 (913)
T ss_pred CchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHH
Confidence 67788888888889999999999999987665 567889999999999999999999999887765 4556677888887
Q ss_pred HHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-H-hhHHHHHHhhhhhhcccCCCcccchhhhHHHHHHHHHHHH
Q 007193 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC-S-RRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIV 495 (613)
Q Consensus 418 a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~-~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~ 495 (613)
..-+.++-...... +.+..-.|.+ .-++-.++ + +++++|..+.......++ .++..|.- +|.--.+
T Consensus 796 le~~~~rkTks~DA---Lkkce~dphV--llaia~lfw~e~k~~kar~Wf~Ravk~d~---d~GD~wa~----fykfel~ 863 (913)
T KOG0495|consen 796 LEPRPQRKTKSIDA---LKKCEHDPHV--LLAIAKLFWSEKKIEKAREWFERAVKKDP---DNGDAWAW----FYKFELR 863 (913)
T ss_pred hccCcccchHHHHH---HHhccCCchh--HHHHHHHHHHHHHHHHHHHHHHHHHccCC---ccchHHHH----HHHHHHH
Confidence 77776664333333 3343333443 33333332 3 378889888776554433 34455532 2333345
Q ss_pred cCCCCcHHHHHHHH
Q 007193 496 AGTIPTVEVVSKVL 509 (613)
Q Consensus 496 ~g~~p~~~~~~~~l 509 (613)
.|-.-|..-+..-.
T Consensus 864 hG~eed~kev~~~c 877 (913)
T KOG0495|consen 864 HGTEEDQKEVLKKC 877 (913)
T ss_pred hCCHHHHHHHHHHH
Confidence 67666665444433
No 36
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.54 E-value=2.4e-10 Score=117.49 Aligned_cols=360 Identities=14% Similarity=0.086 Sum_probs=267.4
Q ss_pred hhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 007193 72 KSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148 (613)
Q Consensus 72 ~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 148 (613)
...|++++|.+++.++. +.+...|.+|...|-+.|+.+++...+-..--. .+-|...|..+.....+.|.+++|.-
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhcccHHHHHH
Confidence 34589999999999875 557789999999999999999998876544433 35677899999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHHHHccCCHHHHHHHHHHHh
Q 007193 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF----NALITACGQSGAVDRAFDVLAEMN 224 (613)
Q Consensus 149 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~li~~~~~~g~~~~a~~~~~~m~ 224 (613)
.|.+.++.. +++....---+..|-+.|+...|..-|.++.....+.|-.-+ ...++.+...++.+.|.+.++...
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999875 556555556677899999999999999999877322222222 234556777788899999988887
Q ss_pred hCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC---------------------------CCHHHHHHHHH
Q 007193 225 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK---------------------------GTPEVYTIAIN 277 (613)
Q Consensus 225 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~---------------------------~~~~~~~~li~ 277 (613)
.. .+-..+...++.++..+.+...++.|......+..+... ++..++ .++-
T Consensus 308 s~-~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~i 385 (895)
T KOG2076|consen 308 SK-EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMI 385 (895)
T ss_pred hh-ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhh
Confidence 63 233445567788888899999999998887766652222 222221 2233
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCH
Q 007193 278 CCSQTGDWEFACSVYDDMTKKGV--IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355 (613)
Q Consensus 278 ~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 355 (613)
++......+....+.....+..+ .-+...|.-+..++.+.|++.+|+.+|..+.....--+..+|-.+..+|...|..
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 34444444444455555555553 3355678889999999999999999999999886566788999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh--------CCCCCCHHHHHHHHHHHhhcCCHHH
Q 007193 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS--------LGLCPNTITYSILLVACERKDDVEV 427 (613)
Q Consensus 356 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--------~g~~p~~~t~~~ll~a~~~~g~~~~ 427 (613)
++|.+.|+...... +-+...-.+|-..+-+.|++++|++.+..+.. .+..|+..........+...|+.++
T Consensus 466 e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 466 EEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999998753 23455666778888999999999999998642 2345566666666677888888877
Q ss_pred HHHHHHHHH
Q 007193 428 GLMLLSQAK 436 (613)
Q Consensus 428 a~~~~~~m~ 436 (613)
=..+-..|+
T Consensus 545 fi~t~~~Lv 553 (895)
T KOG2076|consen 545 FINTASTLV 553 (895)
T ss_pred HHHHHHHHH
Confidence 555544444
No 37
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.54 E-value=4e-11 Score=121.21 Aligned_cols=285 Identities=13% Similarity=0.045 Sum_probs=211.7
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHHH
Q 007193 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG--ALIDGCAKAGQVAKAF 182 (613)
Q Consensus 105 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~A~ 182 (613)
.|+++.|.+.+....+..-. ....|.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 68899888877766554211 2333444455557889999999999988765 45543332 3356788889999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCH------HHHHHHHHHHHhcCChHHHHHH
Q 007193 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH------ITIGALMKACANAGQVDRAREV 256 (613)
Q Consensus 183 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~------~~~~~ll~~~~~~g~~~~A~~~ 256 (613)
..++++.+.. +-+......+...|.+.|++++|.+++..+.+.. ...++. .+|..++.......+.+...++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~-~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH-VGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999988774 4456677788889999999999999998888652 222332 2344555555555566777777
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007193 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336 (613)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 336 (613)
++.+.+. .+.++.....+...+...|+.++|.+++++..+. .||... .++.+....++.+++.+..+...+.. +
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-C
Confidence 7776554 2567788889999999999999999999988875 344421 12333445588999999999888774 5
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007193 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (613)
Q Consensus 337 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (613)
-|+.....+...|.+.|++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+++++-..
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 67778889999999999999999999999875 58988888999999999999999999988654
No 38
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.54 E-value=6.7e-14 Score=135.09 Aligned_cols=255 Identities=18% Similarity=0.165 Sum_probs=77.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCC---CCHHHHHHHHHHHHcCCCh
Q 007193 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDS 108 (613)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~ 108 (613)
.+.+.+.|++++|++++.+.......|.+..+...+...+...+++++|+..++++.. .++..+..++.. ...+++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 3445566777777777754333221244555555555556666666666666666542 223344444444 456666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007193 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG-IEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (613)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (613)
++|.++++...+. .+++..+..++..+.+.++++++.++++.+.... .+++...|..+...+.+.|+.++|++.+++
T Consensus 94 ~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 94 EEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred ccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666666555443 2344455556666666666666666666654322 234555566666666666666666666666
Q ss_pred HHhCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 007193 188 MRSKNVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266 (613)
Q Consensus 188 m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 266 (613)
..+. .| |....+.++..+...|+.+++.+++...... .+.|...+..+..+|...|+.++|...|++..+.+ +
T Consensus 172 al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~---~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 172 ALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA---APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH----HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH---CcCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 6654 33 3455556666666666666666666555442 12333455556666666666666666666665543 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 267 GTPEVYTIAINCCSQTGDWEFACSVYDDM 295 (613)
Q Consensus 267 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m 295 (613)
.|+.....+...+.+.|+.++|.++..+.
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp T-HHHHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 45566666666666666666666665544
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=8e-10 Score=105.29 Aligned_cols=302 Identities=10% Similarity=0.039 Sum_probs=230.5
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHccCC
Q 007193 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK--PDRVVFNALITACGQSGA 212 (613)
Q Consensus 135 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~ 212 (613)
.++-...+.+++.+-.......|++-+...-+....+.-...+++.|+.+|+++.+.... -|..+|+.++ |.+..+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhh
Confidence 445555677788888888888887766666666666667788999999999999987311 1567887776 344332
Q ss_pred HH---HHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007193 213 VD---RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (613)
Q Consensus 213 ~~---~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 289 (613)
.. -|..++. + ....|. |+..+.+-|+-.++.++|...|++..+.+ +.....|+.|..-|....+...|.
T Consensus 313 skLs~LA~~v~~-i----dKyR~E--TCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 313 SKLSYLAQNVSN-I----DKYRPE--TCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred HHHHHHHHHHHH-h----ccCCcc--ceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHH
Confidence 22 2222222 1 234454 77778889999999999999999999987 666789999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007193 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (613)
Q Consensus 290 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 369 (613)
+-++...+-.+. |...|-.+.++|.-.+...=|+-.|++...-. |.|...|.+|.++|.+.++.++|.+.|.+....|
T Consensus 385 ~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 385 ESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 999999988665 89999999999999999999999999998875 6789999999999999999999999999998866
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh----CCCCCCHHH--HHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC
Q 007193 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKS----LGLCPNTIT--YSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443 (613)
Q Consensus 370 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~~t--~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~ 443 (613)
..+...+..|...|-+.++..+|...|.+-.+ .|..-+... ..-|..-+.+.+++++|..+.....+. .+.
T Consensus 463 -dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e 539 (559)
T KOG1155|consen 463 -DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETE 539 (559)
T ss_pred -ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--Cch
Confidence 34668899999999999999999999988654 343322222 222445567788888887766655542 444
Q ss_pred HHHHHHHH
Q 007193 444 LVMFKCII 451 (613)
Q Consensus 444 ~~~~~~li 451 (613)
..-.++|+
T Consensus 540 ~eeak~Ll 547 (559)
T KOG1155|consen 540 CEEAKALL 547 (559)
T ss_pred HHHHHHHH
Confidence 43334443
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.53 E-value=4.8e-11 Score=120.64 Aligned_cols=283 Identities=8% Similarity=0.005 Sum_probs=218.4
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHccCCHHHH
Q 007193 140 SGKVDAMFEVFHEMVNAGIEPNVHTYG-ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN--ALITACGQSGAVDRA 216 (613)
Q Consensus 140 ~g~~~~a~~~~~~m~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~a 216 (613)
.|+++.|.+.+....+.. ++...+- .......+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 699999998888766542 2233333 3344457899999999999999875 56654333 335678899999999
Q ss_pred HHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHH
Q 007193 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP-------EVYTIAINCCSQTGDWEFAC 289 (613)
Q Consensus 217 ~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~ 289 (613)
...++++.+.. +.+......+...|.+.|++++|.+++..+.+....++. .+|..++.......+.+...
T Consensus 173 l~~l~~~~~~~---P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~ 249 (398)
T PRK10747 173 RHGVDKLLEVA---PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLK 249 (398)
T ss_pred HHHHHHHHhcC---CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 99999998642 445678888899999999999999999999988754332 23444455555556667777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007193 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (613)
Q Consensus 290 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 369 (613)
++++.+.+.- +.+......+...+...|+.++|..++....+. +++... .++.+....++.+++.+..+...+..
T Consensus 250 ~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~ 324 (398)
T PRK10747 250 RWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH 324 (398)
T ss_pred HHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC
Confidence 7777765442 347778888999999999999999999998885 455532 23344446699999999999888654
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 370 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
+-|...+.++...+.+.+++++|.+.|+.+.+ ..|+..++..+..++.+.|+.++|.+++++-..
T Consensus 325 -P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 325 -GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34567788999999999999999999999988 479999999999999999999999999988754
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.50 E-value=1.4e-10 Score=118.03 Aligned_cols=287 Identities=11% Similarity=-0.007 Sum_probs=144.8
Q ss_pred HcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHH
Q 007193 103 ASSKDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV--HTYGALIDGCAKAGQVA 179 (613)
Q Consensus 103 ~~~~~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~ 179 (613)
...|+++.|.+.+....+.. |+ ...+-....++.+.|+.+.|.+.+.+..+. .|+. ...-.....+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHH
Confidence 34677777777776665542 33 333444456666677777777777776554 2333 23333456666677777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHH-HHHHH---HhcCChHHHHH
Q 007193 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA-LMKAC---ANAGQVDRARE 255 (613)
Q Consensus 180 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~-ll~~~---~~~g~~~~A~~ 255 (613)
.|...++.+.+.. +-+...+..+...+...|++++|.+++..+.+.+ . ++...+.. -..++ ...+..+.+.+
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~--~-~~~~~~~~l~~~a~~~~l~~~~~~~~~~ 246 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG--L-FDDEEFADLEQKAEIGLLDEAMADEGID 246 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC--C-CCHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 7777777777663 3345566666677777777777777777766531 1 12111211 01111 11222222222
Q ss_pred HHHHHHhcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHH
Q 007193 256 VYKMIHKYN---IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF--AGHAGKVEAAFEILQEA 330 (613)
Q Consensus 256 ~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~~ 330 (613)
.+..+.+.. .+.++..+..+...+...|+.++|.+++++..+....+....+. ++.. ....++.+.+.+.++..
T Consensus 247 ~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~ 325 (409)
T TIGR00540 247 GLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQ 325 (409)
T ss_pred HHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH-HHHHhhhcCCCChHHHHHHHHHH
Confidence 333333221 11355666666666666677777766666666653221111000 1111 12234445555555444
Q ss_pred HHCCCCcCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 007193 331 KNQGISVGI--ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399 (613)
Q Consensus 331 ~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 399 (613)
.+.. +-|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++
T Consensus 326 lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 326 AKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4432 2233 344455555555555555555555322222245555455555555555555555555554
No 42
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.49 E-value=2.8e-08 Score=98.78 Aligned_cols=415 Identities=13% Similarity=0.092 Sum_probs=329.5
Q ss_pred chhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHh---CCCCCHHHHHHHHH
Q 007193 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL---VPNPTLSTFNMLMS 100 (613)
Q Consensus 24 ~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~li~ 100 (613)
.++.++..|..-+.....+.|+-++++..+-- |.+..+...+ .+..-++.|.+++.+ ..+.+...|.+-..
T Consensus 375 ~iP~sv~LWKaAVelE~~~darilL~rAvecc--p~s~dLwlAl----arLetYenAkkvLNkaRe~iptd~~IWitaa~ 448 (913)
T KOG0495|consen 375 HIPRSVRLWKAAVELEEPEDARILLERAVECC--PQSMDLWLAL----ARLETYENAKKVLNKAREIIPTDREIWITAAK 448 (913)
T ss_pred hCCchHHHHHHHHhccChHHHHHHHHHHHHhc--cchHHHHHHH----HHHHHHHHHHHHHHHHHhhCCCChhHHHHHHH
Confidence 34567788888888888888999999888753 5544444333 334446666666654 55778899988888
Q ss_pred HHHcCCChHHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHh
Q 007193 101 VCASSKDSEGAFQVLRLV----QEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP--NVHTYGALIDGCAK 174 (613)
Q Consensus 101 ~~~~~~~~~~A~~~~~~m----~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~ 174 (613)
.--.+|+.+....++.+- ...|+.-+...|..=...|-..|.+-.+..+....+..|++- -..||+.-...|.+
T Consensus 449 LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k 528 (913)
T KOG0495|consen 449 LEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEK 528 (913)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHh
Confidence 888899999888887654 457888899999988899999999999999999888877653 35689999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 007193 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254 (613)
Q Consensus 175 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 254 (613)
.+.++-|..+|...++- .+-+...|......--..|..+....+|.+.... ++.....|......+-..|++..|.
T Consensus 529 ~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~---~pkae~lwlM~ake~w~agdv~~ar 604 (913)
T KOG0495|consen 529 RPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ---CPKAEILWLMYAKEKWKAGDVPAAR 604 (913)
T ss_pred cchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHhcCCcHHHH
Confidence 99999999999998875 3456677877777777789999999999998864 3445566766777788899999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007193 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (613)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (613)
.++....+.+ +.+...|-+-+..-..+..++.|..+|.+.... .|+...|.--+..---.+..++|.+++++..+.
T Consensus 605 ~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~- 680 (913)
T KOG0495|consen 605 VILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS- 680 (913)
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-
Confidence 9999998886 557889999999999999999999999998775 456666666666666678999999999988877
Q ss_pred CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 007193 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414 (613)
Q Consensus 335 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 414 (613)
++.-...|..+...+-+.++++.|.+.|..=.+. ++..+..|-.|...--+.|++-+|..+|++..-.+ +-+...|..
T Consensus 681 fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle 758 (913)
T KOG0495|consen 681 FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLE 758 (913)
T ss_pred CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHH
Confidence 3445667888888999999999999888765433 33456788888888888999999999999987763 447788999
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007193 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (613)
Q Consensus 415 ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 455 (613)
.|..-.+.|+.+.|..+..+.++. +..+...|..-|.+..
T Consensus 759 ~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~ 798 (913)
T KOG0495|consen 759 SIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEP 798 (913)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhcc
Confidence 999999999999999999888864 4556666776666643
No 43
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.48 E-value=9.2e-10 Score=100.19 Aligned_cols=221 Identities=16% Similarity=0.169 Sum_probs=117.6
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCH
Q 007193 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV------HTYGALIDGCAKAGQV 178 (613)
Q Consensus 105 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~------~~~~~li~~~~~~g~~ 178 (613)
+.+.++|.++|-+|.+.. +.+..+--+|-+.|.+.|.+|.|+.++..+.++ ||. ...-.|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 346677777777776532 334445556667777777777777777776653 332 2233444556666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC----HHHHHHHHHHHHhcCChHHHH
Q 007193 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALMKACANAGQVDRAR 254 (613)
Q Consensus 179 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~ 254 (613)
+.|..+|..+.+.| .--......|+..|-...++++|.++-+++...+ -.+. ...|.-+...+....+++.|.
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~--~q~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLG--GQTYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC--CccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 66666666666543 2223445556666666666666666665554321 1111 112333333444445555566
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (613)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (613)
.++.+..+.+ +..+..--.+.+.+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.++....+..+.+.
T Consensus 201 ~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 201 ELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 6655555543 22222333344455555566666666655555543323344455555555555555555555555544
No 44
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.47 E-value=2.5e-10 Score=107.98 Aligned_cols=392 Identities=15% Similarity=0.173 Sum_probs=256.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHhCCC----CCHH-HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHH
Q 007193 66 RFFNVCKSQKAIKEAFRFFKLVPN----PTLS-TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD----CKLYTTLITT 136 (613)
Q Consensus 66 ~l~~~~~~~~~~~~A~~~~~~~~~----~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~ 136 (613)
.+.+-|..+....+|+..|+-+.. ||.- .--.+...+.+...+.+|+..++.....-...+ ....+.+--.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 344455556677888888876542 2222 122344567888899999999988776421112 2234444455
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------------CCCHHHHHHHH
Q 007193 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV------------KPDRVVFNALI 204 (613)
Q Consensus 137 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------------~p~~~~~~~li 204 (613)
+.+.|+++.|+.-|+...+. .||..+--.|+-++..-|+-++..+.|.+|..... .|+....+.-|
T Consensus 286 fiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred EEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 67889999999999998776 68877766666677778999999999999976432 23444443333
Q ss_pred H-----HHHccCC--HHHHHHHHHHHhhCCCCCCCCHHH-------------H--------HHHHHHHHhcCChHHHHHH
Q 007193 205 T-----ACGQSGA--VDRAFDVLAEMNAEVHPVDPDHIT-------------I--------GALMKACANAGQVDRAREV 256 (613)
Q Consensus 205 ~-----~~~~~g~--~~~a~~~~~~m~~~~~~~~~~~~~-------------~--------~~ll~~~~~~g~~~~A~~~ 256 (613)
. -.-+.+. -+++.-.-..+.. .-+.||-.. + -.-...|.+.|+++.|.++
T Consensus 364 ~nd~lk~~ek~~ka~aek~i~ta~kiia--pvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aiei 441 (840)
T KOG2003|consen 364 KNDHLKNMEKENKADAEKAIITAAKIIA--PVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEI 441 (840)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHhc--cccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHH
Confidence 2 1212111 1222211111111 112222110 0 0112347899999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHH------------------------------------HHHhcCCHHHHHHHHHHHHHCCC
Q 007193 257 YKMIHKYNIKGTPEVYTIAIN------------------------------------CCSQTGDWEFACSVYDDMTKKGV 300 (613)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~li~------------------------------------~~~~~g~~~~a~~~~~~m~~~g~ 300 (613)
+.-+.+.+-..-...-+.|-. .-..+|++++|.+.+++....+.
T Consensus 442 lkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda 521 (840)
T KOG2003|consen 442 LKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA 521 (840)
T ss_pred HHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch
Confidence 987766542221111111100 01234788999999999887643
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007193 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380 (613)
Q Consensus 301 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 380 (613)
.-....|+ +.-.+...|++++|++.|-.+... ...+..+...+...|....+..+|.+++.+.... ++.|+.....|
T Consensus 522 sc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl 598 (840)
T KOG2003|consen 522 SCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKL 598 (840)
T ss_pred HHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHH
Confidence 32222333 233566789999999998776543 2346778888889999999999999999877653 35568888999
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---h
Q 007193 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR---R 457 (613)
Q Consensus 381 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~---~ 457 (613)
...|-+.|+-.+|.+..-+--+. ++-+..|...|..-|....-+++++.+|++..- +.|+..-|..+|..|.| .
T Consensus 599 ~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgn 675 (840)
T KOG2003|consen 599 ADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGN 675 (840)
T ss_pred HHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhccc
Confidence 99999999999999887554432 455778888888888888889999999998765 78999999999988876 5
Q ss_pred HHHHHHhhhh
Q 007193 458 YEKARTLNEH 467 (613)
Q Consensus 458 ~~~a~~~~~~ 467 (613)
|.+|.++.+.
T Consensus 676 yqka~d~yk~ 685 (840)
T KOG2003|consen 676 YQKAFDLYKD 685 (840)
T ss_pred HHHHHHHHHH
Confidence 7776665543
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.44 E-value=6.7e-11 Score=117.76 Aligned_cols=283 Identities=14% Similarity=0.081 Sum_probs=203.7
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHccCCHH-HHHH
Q 007193 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN--VKPDRVVFNALITACGQSGAVD-RAFD 218 (613)
Q Consensus 142 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~-~a~~ 218 (613)
+..+|...|..+... +.-+..+...+..+|...+++++|.++|+.+.+.. .--+...|.+.+.-+-+.-.+. -|..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 457788888885544 22334556677888888899999999998887651 1124556776664433221111 1222
Q ss_pred HHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 219 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 219 ~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (613)
+.+.. +....+|.++.+.|+-.++.+.|++.|++..+.+ +....+|+.+..-+.....+|.|...|+..+..
T Consensus 413 Li~~~-------~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 413 LIDTD-------PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHhhC-------CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 22221 2335688888899998999999999998888876 446678888888888888899999988887765
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007193 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378 (613)
Q Consensus 299 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 378 (613)
... +...|..+.-.|.+.++++.|.-.|+...+.+ +.+.+....+...+-+.|+.++|++++++..... +.|+.+--
T Consensus 485 ~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~ 561 (638)
T KOG1126|consen 485 DPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKY 561 (638)
T ss_pred Cch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHH
Confidence 433 44566667778888899999998888888876 5567777778888888899999999998887654 34555555
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 007193 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSILLVACERKDDVEVGLMLLSQAKED 438 (613)
Q Consensus 379 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (613)
..+..+...+++++|+..++++++ +.|+. ..|..+...|.+.|+.+.|+.-|.-+.+.
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 566677778889999999998887 45654 55667778888899988888888777763
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=9.4e-11 Score=116.74 Aligned_cols=284 Identities=11% Similarity=0.028 Sum_probs=202.1
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007193 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG--IEPNVHTYGALIDGCAKAGQVAKAFGA 184 (613)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~ 184 (613)
+.++|...|.....+ +.-+..+...+..+|...+++++|+++|+.+.+.. ...+..+|.+.+-.+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 456788888775444 33445667778888888888888888888887652 123667777776544332 12222
Q ss_pred HH-HHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007193 185 YG-IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHK 262 (613)
Q Consensus 185 ~~-~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 262 (613)
+. .+... -+-.+.+|-++.++|.-.++.+.|++.|++..+. .| ..++|+.+..-+....++|.|...|+....
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl----dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL----DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc----CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 21 22221 1335678888888888888888888888888753 44 577788777778888888888888888766
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhH
Q 007193 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342 (613)
Q Consensus 263 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 342 (613)
.+ +..-..|.-+.-.|.+.++++.|.-.|+...+-++. +.+....+...+.+.|+.++|+.++++..... +-|+..-
T Consensus 484 ~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~ 560 (638)
T KOG1126|consen 484 VD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCK 560 (638)
T ss_pred CC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhH
Confidence 54 223345555677788888888888888888877654 66777777778888888899999888887765 3344444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 007193 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404 (613)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 404 (613)
-.-...+...+++++|+..++++++.- +.+...+-.+...|.+.|+.+.|+.-|..+.+..
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 455566777888899999998888752 3345667777888888899999988888887743
No 47
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.42 E-value=1.4e-09 Score=99.01 Aligned_cols=269 Identities=14% Similarity=0.081 Sum_probs=188.4
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHccCCH
Q 007193 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR------VVFNALITACGQSGAV 213 (613)
Q Consensus 140 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~ 213 (613)
..+.++|.++|-+|.+.. +.+..+--+|.+.|-+.|..+.|+++.+.+.++ ||. ...-.|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 457889999999988753 334555667888888899999999998888764 331 2334456677888888
Q ss_pred HHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHH
Q 007193 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT----PEVYTIAINCCSQTGDWEFAC 289 (613)
Q Consensus 214 ~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~ 289 (613)
|.|+++|..+...+ .--....-.|+..|-...+|++|.++-+++.+.+-.+. ...|.-+...+....+.+.|.
T Consensus 124 DRAE~~f~~L~de~---efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 124 DRAEDIFNQLVDEG---EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred hHHHHHHHHHhcch---hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 99999988877531 12234566788888888889988888888877664433 223555666666677888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007193 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (613)
Q Consensus 290 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 369 (613)
.++.+..+.+.+ .+..--.+.+.....|++..|.+.++.+.+++...-+.+...|..+|.+.|+.++....+..+.+..
T Consensus 201 ~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 201 ELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 888888776543 3333344556777888888888888888888766666778888888888888888888888877753
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 007193 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420 (613)
Q Consensus 370 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 420 (613)
+....-..+...-....-.+.|...+.+-... +|+...+..++..-.
T Consensus 280 --~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l 326 (389)
T COG2956 280 --TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHL 326 (389)
T ss_pred --CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhh
Confidence 33333344444444445556666665554443 688888888886543
No 48
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.42 E-value=4.9e-08 Score=93.47 Aligned_cols=398 Identities=11% Similarity=0.064 Sum_probs=291.9
Q ss_pred hHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC--CCCHHHHHHHHHH
Q 007193 28 QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMSV 101 (613)
Q Consensus 28 ~~~~~~~l~----~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~ 101 (613)
++..|-.++ ++..+..|+.++++....- |-...+..-.+.+-...|++.-|.++|++-. .|+...|++.|+.
T Consensus 106 ~itLWlkYae~Emknk~vNhARNv~dRAvt~l--PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~f 183 (677)
T KOG1915|consen 106 NITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKF 183 (677)
T ss_pred cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 334454444 8999999999999988653 5444444444444556788999999998743 7999999999999
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-CC-CCCHHHHHHHHHHHHhcCCHH
Q 007193 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA-GI-EPNVHTYGALIDGCAKAGQVA 179 (613)
Q Consensus 102 ~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~-~~~~~~~~~li~~~~~~g~~~ 179 (613)
-.+-+.++.|..++++.+-. .|++.+|......--++|.+..|.++|+...+. |- ..+...+.+....-.++..++
T Consensus 184 ElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~E 261 (677)
T KOG1915|consen 184 ELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYE 261 (677)
T ss_pred HHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998854 799999999999999999999999999987653 10 112334455555555678899
Q ss_pred HHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCCHHHHHHH--------HHHHhhCCCCCCCCHHHHHHHHHHHHhcCC
Q 007193 180 KAFGAYGIMRSKNVKPD--RVVFNALITACGQSGAVDRAFDV--------LAEMNAEVHPVDPDHITIGALMKACANAGQ 249 (613)
Q Consensus 180 ~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~--------~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~ 249 (613)
.|.-+|.-.+.. ++.+ ...|......=-+-|+....... ++.+... -+-|-.+|--.+..-...|+
T Consensus 262 Rar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~---np~nYDsWfdylrL~e~~g~ 337 (677)
T KOG1915|consen 262 RARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK---NPYNYDSWFDYLRLEESVGD 337 (677)
T ss_pred HHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh---CCCCchHHHHHHHHHHhcCC
Confidence 999999888765 2222 23344443333334554333222 3344432 24566678888888888899
Q ss_pred hHHHHHHHHHHHhcCCCCCH--HHHHHHHHH--------HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----
Q 007193 250 VDRAREVYKMIHKYNIKGTP--EVYTIAINC--------CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG---- 315 (613)
Q Consensus 250 ~~~A~~~~~~~~~~~~~~~~--~~~~~li~~--------~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~---- 315 (613)
.+...++|++.... ++|-. ..|...|-. -....+.+.+.++++...+. ++...+||.-+--.|+
T Consensus 338 ~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feI 415 (677)
T KOG1915|consen 338 KDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEI 415 (677)
T ss_pred HHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHH
Confidence 99999999998875 45521 122222211 13467889999999999884 3335677776655555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 007193 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395 (613)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 395 (613)
++.++..|.+++...+ |..|...++...|..-.+.++++.+..++++..+.+ +-+..+|......-...|+.+.|..
T Consensus 416 Rq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRa 492 (677)
T KOG1915|consen 416 RQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARA 492 (677)
T ss_pred HHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHH
Confidence 5678999999998775 557889999999999999999999999999999876 4567889888888888999999999
Q ss_pred HHHHHHhCC-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 007193 396 VLSDMKSLG-LCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (613)
Q Consensus 396 l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (613)
+|+-...+. +.--...|-+.|+--...|.++.|+.+++++++.
T Consensus 493 ifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 493 IFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 999988742 1113455667777777899999999999999874
No 49
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.41 E-value=2.7e-09 Score=100.23 Aligned_cols=285 Identities=16% Similarity=0.123 Sum_probs=183.7
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007193 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184 (613)
Q Consensus 105 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 184 (613)
.|++..|+.+..+-.+++ +.....|..-..+.-..|+.+.+-..+.+..+..-.++....-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 578888888888777766 3335566666777777888888888888877653245566666777777788888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-------HHHHHHHHHHHHhcCChHHHHHHH
Q 007193 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-------HITIGALMKACANAGQVDRAREVY 257 (613)
Q Consensus 185 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------~~~~~~ll~~~~~~g~~~~A~~~~ 257 (613)
.+++.+.+ +.+.........+|.+.|++.....++..+.+.+ .-.| ..+|..+++-....+..+.-...+
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~--~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG--LLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc--CCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 87777764 4456677777788888888888888888877652 2222 234555555444444444444455
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 007193 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337 (613)
Q Consensus 258 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 337 (613)
+..+.. .+.++..-.+++.-+.+.|+.++|.++..+..+.+..|. ... .-.+.+.++...-.+..+.-.+.. +.
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~-~~~~l~~~d~~~l~k~~e~~l~~h-~~ 326 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR-LIPRLRPGDPEPLIKAAEKWLKQH-PE 326 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHH-HHhhcCCCCchHHHHHHHHHHHhC-CC
Confidence 555443 244455666667777777777777777777776665544 111 123344555555555555544442 34
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 007193 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (613)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 401 (613)
++-.+.+|...|.+.+.+.+|...|+..... .|+..+|+.+.++|.+.|+..+|.+..++..
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4466666777777777777777777755543 5677777777777777777777777666644
No 50
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.37 E-value=3.1e-10 Score=116.03 Aligned_cols=251 Identities=16% Similarity=0.162 Sum_probs=149.9
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 007193 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193 (613)
Q Consensus 114 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 193 (613)
++..+...|+.|+.+||..+|.-||..|+++.|- +|.-|.-...+.+...++.++.+..+.++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 3444555566666666666666666666665555 5555555554555555666665555555554443
Q ss_pred CCCHHHHHHHHHHHHccCCHHH---HHH--------------------HHHHHhhCCCCCCCCHHHHHHHHHHHHhcCCh
Q 007193 194 KPDRVVFNALITACGQSGAVDR---AFD--------------------VLAEMNAEVHPVDPDHITIGALMKACANAGQV 250 (613)
Q Consensus 194 ~p~~~~~~~li~~~~~~g~~~~---a~~--------------------~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~ 250 (613)
.|...||..|..+|...||+.. ..+ ++..+.- ..+.-||..+ .+......|.+
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c-~p~~lpda~n---~illlv~eglw 155 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHC-CPHSLPDAEN---AILLLVLEGLW 155 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhccc-CcccchhHHH---HHHHHHHHHHH
Confidence 4455556666666666655432 111 1111110 1122333222 33334455666
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007193 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG-DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329 (613)
Q Consensus 251 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 329 (613)
+.+.+++..++...-.. +... +++-+.... .+++-....+...+ .|+..+|..++..-...|+.+.|..++.+
T Consensus 156 aqllkll~~~Pvsa~~~-p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~e 229 (1088)
T KOG4318|consen 156 AQLLKLLAKVPVSAWNA-PFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYE 229 (1088)
T ss_pred HHHHHHHhhCCcccccc-hHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 66666665554332111 1111 233332222 22333222222222 57889999999999999999999999999
Q ss_pred HHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 007193 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389 (613)
Q Consensus 330 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 389 (613)
|.+.|++.+..-|..|+-+ .++..-+..+.+.|.+.|+.|+..|+...+..+.++|+
T Consensus 230 mke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 230 MKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 9999999888888888766 77888888888999999999999998888777777665
No 51
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=1e-08 Score=98.59 Aligned_cols=378 Identities=11% Similarity=0.066 Sum_probs=240.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHcCCChHH
Q 007193 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP---TLSTFNMLMSVCASSKDSEG 110 (613)
Q Consensus 34 ~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~ 110 (613)
.+.++|++++|++.+.+.+... |...+.+......|.+.|++++..+.-.+...- -+..++--.+++-+.|++.+
T Consensus 124 ~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~e 201 (606)
T KOG0547|consen 124 KFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDE 201 (606)
T ss_pred hhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHH
Confidence 3448999999999999999876 665777788888889999999988876665432 23455555667777888877
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH--------HHHHHHH-HHHCC--CCCCHHHHHHHHHHHHh-----
Q 007193 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--------MFEVFHE-MVNAG--IEPNVHTYGALIDGCAK----- 174 (613)
Q Consensus 111 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~--------a~~~~~~-m~~~g--~~~~~~~~~~li~~~~~----- 174 (613)
|+.=..- .+++..+....-... |.+...+ +...+ +-|+....++....+..
T Consensus 202 al~D~tv-------------~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~ 268 (606)
T KOG0547|consen 202 ALFDVTV-------------LCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPL 268 (606)
T ss_pred HHHhhhH-------------HHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccccc
Confidence 7542221 112222211111111 1111111 11111 22343333333332211
Q ss_pred --------------------cC---CHHHHHHHHHHHHhC-CCCC-----C------HHHHHHHHHHHHccCCHHHHHHH
Q 007193 175 --------------------AG---QVAKAFGAYGIMRSK-NVKP-----D------RVVFNALITACGQSGAVDRAFDV 219 (613)
Q Consensus 175 --------------------~g---~~~~A~~~~~~m~~~-g~~p-----~------~~~~~~li~~~~~~g~~~~a~~~ 219 (613)
.+ .+..|.+.+.+-... -..+ | ..+...-...+.-.|+.-.|..-
T Consensus 269 ~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d 348 (606)
T KOG0547|consen 269 FDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQED 348 (606)
T ss_pred ccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhh
Confidence 01 122222222111100 0011 1 11111111123345778888888
Q ss_pred HHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007193 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (613)
Q Consensus 220 ~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 299 (613)
|+..+... +.+...|--+..+|....+.++....|++..+.+ +.++.+|..=...+.-.+++++|..=|++.....
T Consensus 349 ~~~~I~l~---~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~ 424 (606)
T KOG0547|consen 349 FDAAIKLD---PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD 424 (606)
T ss_pred HHHHHhcC---cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 88887642 2222236667778899999999999999998887 5667788887888888889999999999988875
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------
Q 007193 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT------ 373 (613)
Q Consensus 300 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~------ 373 (613)
+. +...|--+.-+..+.++++++...|++.++. +|..+.+|+-....+...++++.|.+.|+...+. .|+
T Consensus 425 pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v 500 (606)
T KOG0547|consen 425 PE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIV 500 (606)
T ss_pred hh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccc
Confidence 43 5556666666667788999999999998877 5777889999999999999999999999987764 232
Q ss_pred -HHH--HHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 374 -VST--MNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 374 -~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
..+ --+++-. --.+++..|+.++++..+. .| ....|.+|...-.+.|+.++|+++|++...
T Consensus 501 ~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 501 NAAPLVHKALLVL-QWKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cchhhhhhhHhhh-chhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 111 1111111 1237888999999998874 45 557788888888999999999999987654
No 52
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=6.3e-09 Score=101.82 Aligned_cols=371 Identities=11% Similarity=0.043 Sum_probs=259.1
Q ss_pred HHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHcCChhH
Q 007193 70 VCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG----LKADCKLYTTLITTCAKSGKVDA 145 (613)
Q Consensus 70 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g----~~~~~~~~~~li~~~~~~g~~~~ 145 (613)
++....+.++|...|++....|+..+..+...-.. ..-.+.+.++.+.... ...++.....+.....-...-+.
T Consensus 150 ~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~ 227 (611)
T KOG1173|consen 150 VYVALDNREEARDKYKEALLADAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEE 227 (611)
T ss_pred hhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcccc
Confidence 34455667788888877766666666554433221 1122222233332111 11222222222222211111111
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 007193 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (613)
Q Consensus 146 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 225 (613)
....-.+-.-.+...+.........-+-..+++.+..++++...+.. ++....+..=|.++...|+..+-..+=.++..
T Consensus 228 ~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~ 306 (611)
T KOG1173|consen 228 SLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVD 306 (611)
T ss_pred ccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 11111111112334566666677777888999999999999998873 56666677677788899998887777777775
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC
Q 007193 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK--GVIPD 303 (613)
Q Consensus 226 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~ 303 (613)
. .|....+|-++.--|.-.|+..+|++.|.+....+ +.-...|-.+...|.-.|..++|+..+...-+. |..
T Consensus 307 ~---yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-- 380 (611)
T KOG1173|consen 307 L---YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-- 380 (611)
T ss_pred h---CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc--
Confidence 3 35567889999888888999999999999887765 233468999999999999999999999877653 321
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----C--CCCCHHHH
Q 007193 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI----K--LKPTVSTM 377 (613)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~--~~~~~~~~ 377 (613)
.-+--+.--|.+.+..+.|.+.|.+..... |.|+.+++-+.-.....+.+.+|...|+...+. + ...-..++
T Consensus 381 -lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~ 458 (611)
T KOG1173|consen 381 -LPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTL 458 (611)
T ss_pred -chHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHH
Confidence 112233345778899999999999988774 778899999988888999999999999987631 1 01134568
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007193 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (613)
Q Consensus 378 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 454 (613)
+.|..+|.+.+.+++|+..+++.... .+-|..++.++.-.+...|+++.|.+.|.+.+- +.|+..+-+.++..+
T Consensus 459 ~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 459 NNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 88999999999999999999998875 245889999999999999999999999988775 789987777777653
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.35 E-value=1.5e-08 Score=95.37 Aligned_cols=286 Identities=12% Similarity=0.045 Sum_probs=211.5
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 007193 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219 (613)
Q Consensus 140 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 219 (613)
.|++.+|+++..+-.+.+ +.....|..-..+--+.|+.+.+-+++.+.-+.--.++....-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 588999999988877776 3334456666677778899999999998887763355566666777788888999999888
Q ss_pred HHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHH
Q 007193 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP-------EVYTIAINCCSQTGDWEFACSVY 292 (613)
Q Consensus 220 ~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~ 292 (613)
++++.... +.+..+......+|.+.|++.....++..+.+.+.-.+. .+|+.+++-....+..+.-...+
T Consensus 176 v~~ll~~~---pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 176 VDQLLEMT---PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHhC---cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 88877642 445677788889999999999999999999888865553 35666666666666666655666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 007193 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372 (613)
Q Consensus 293 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 372 (613)
+..... .+-+...-.+++.-+.++|+.++|.++..+..+++..|. ... .-.+.+.++.+.-.+..+.-.... +-
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~-~~~~l~~~d~~~l~k~~e~~l~~h-~~ 326 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR-LIPRLRPGDPEPLIKAAEKWLKQH-PE 326 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHH-HHhhcCCCCchHHHHHHHHHHHhC-CC
Confidence 666543 233556667788888889999999999988888876665 222 223556677666666665543321 23
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 373 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
++..+.+|...|.+++.+.+|.+.|+...+ ..|+..+|..+..++.+.|+.++|.+..++...
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 446788888889999999999999997776 478999999999999999999999988887663
No 54
>PF13041 PPR_2: PPR repeat family
Probab=99.32 E-value=5e-12 Score=85.58 Aligned_cols=50 Identities=30% Similarity=0.639 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 007193 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421 (613)
Q Consensus 372 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 421 (613)
||..+||++|++|++.|++++|.++|++|.+.|++||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 66777777777777777777777777777777777777777777777654
No 55
>PF13041 PPR_2: PPR repeat family
Probab=99.31 E-value=6e-12 Score=85.16 Aligned_cols=50 Identities=36% Similarity=0.658 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 007193 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (613)
Q Consensus 160 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 209 (613)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666666666666666666666666666666666666666666666653
No 56
>PRK12370 invasion protein regulator; Provisional
Probab=99.29 E-value=3.6e-09 Score=111.84 Aligned_cols=248 Identities=13% Similarity=0.013 Sum_probs=174.5
Q ss_pred hHHHHHHHHHHHhCC---CCCHHHHHHHHHHHH---------cCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 007193 74 QKAIKEAFRFFKLVP---NPTLSTFNMLMSVCA---------SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141 (613)
Q Consensus 74 ~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~---------~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 141 (613)
.+++++|..+|++.. +.+...|..+...+. ..+++++|...+++..+.. +.+...+..+...+...|
T Consensus 274 ~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 456788999988754 234455655554433 2345789999999998875 557788888888889999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccCCHHHHHHHH
Q 007193 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR-VVFNALITACGQSGAVDRAFDVL 220 (613)
Q Consensus 142 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~ 220 (613)
++++|...|++..+.+ +.+...+..+...+...|++++|...+++..+.. |+. ..+..++..+...|++++|...+
T Consensus 353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 9999999999998875 4457778888899999999999999999998763 442 23334445566688999999999
Q ss_pred HHHhhCCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 007193 221 AEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK- 298 (613)
Q Consensus 221 ~~m~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~- 298 (613)
.+..... +| +...+..+...+...|+.++|...+.++.... +.+....+.+...|...| +.|...++.+.+.
T Consensus 430 ~~~l~~~---~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~ 503 (553)
T PRK12370 430 DELRSQH---LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESE 503 (553)
T ss_pred HHHHHhc---cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHh
Confidence 8886531 24 34456667788889999999999998876543 334555667777777777 4777777776542
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007193 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (613)
Q Consensus 299 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (613)
...|....+..+ .+.-.|+-+.+... +++.+.+
T Consensus 504 ~~~~~~~~~~~~--~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 504 QRIDNNPGLLPL--VLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hHhhcCchHHHH--HHHHHhhhHHHHHH-HHhhccc
Confidence 122222233333 34445666666555 7777664
No 57
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.29 E-value=3.8e-07 Score=90.78 Aligned_cols=406 Identities=14% Similarity=0.128 Sum_probs=251.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 007193 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQ 113 (613)
Q Consensus 34 ~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 113 (613)
.++++|++..-+..|++..+.-.+.....++...+++..+.+-.+-+.+++.+-..-++..-+--|..+++.+++++|.+
T Consensus 111 ~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~ 190 (835)
T KOG2047|consen 111 FLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQ 190 (835)
T ss_pred HHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHH
Confidence 45689999999999998887765555666677778888888888899999988776666777888888999999999999
Q ss_pred HHHHHHHc------CCCCCHHHHHHHHHHHHHcCChhH---HHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHH
Q 007193 114 VLRLVQEA------GLKADCKLYTTLITTCAKSGKVDA---MFEVFHEMVNAGIEPN--VHTYGALIDGCAKAGQVAKAF 182 (613)
Q Consensus 114 ~~~~m~~~------g~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~ 182 (613)
.+...... ..+.+...|.-+-+..++.-+.-. ..++++.+... -+| ...|++|.+-|.+.|.+++|.
T Consensus 191 ~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekar 268 (835)
T KOG2047|consen 191 RLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKAR 268 (835)
T ss_pred HHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 88877532 125566677777777766644332 23344444432 234 357999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCC----------------------HHHHHHHHHHHhhCCCCC----------
Q 007193 183 GAYGIMRSKNVKPDRVVFNALITACGQSGA----------------------VDRAFDVLAEMNAEVHPV---------- 230 (613)
Q Consensus 183 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----------------------~~~a~~~~~~m~~~~~~~---------- 230 (613)
++|++.... ..+..-|..+.++|+.-.. ++-.+.-|+.+.... ++
T Consensus 269 Dvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr-~~~lNsVlLRQn 345 (835)
T KOG2047|consen 269 DVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR-PLLLNSVLLRQN 345 (835)
T ss_pred HHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc-chHHHHHHHhcC
Confidence 999998765 2344445555555543211 222233333333210 10
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 007193 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT------PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304 (613)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 304 (613)
+.++..|..-+. ...|+..+-..++.+..+. +.|. ...|..+...|-.+|+.+.|..+|++..+...+ ..
T Consensus 346 ~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~-~v 421 (835)
T KOG2047|consen 346 PHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK-TV 421 (835)
T ss_pred CccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc-ch
Confidence 111222222221 2235556666666666543 1221 346888889999999999999999998876443 22
Q ss_pred ----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----------CCc------CHHhHHHHHHHHHhcCCHHHHHHHHH
Q 007193 305 ----VFLSALIDFAGHAGKVEAAFEILQEAKNQG-----------ISV------GIISYSSLMGACSNAKNWQKALELYE 363 (613)
Q Consensus 305 ----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----------~~~------~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (613)
.+|..-...=.+..+++.|+++.+...... .++ +..+|...++.--..|-++....+++
T Consensus 422 ~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYd 501 (835)
T KOG2047|consen 422 EDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYD 501 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 233333334445667788888777654321 111 23345555666667788888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHh---hcCCHHHHHHHHHHHHHcC
Q 007193 364 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSILLVACE---RKDDVEVGLMLLSQAKEDG 439 (613)
Q Consensus 364 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~---~~g~~~~a~~~~~~m~~~g 439 (613)
++.+..+-......| ....+-.+.-++++.+++++-+..=-.|+. ..|++.+.-+. ..-.++.|+.+|++.++ |
T Consensus 502 riidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~ 579 (835)
T KOG2047|consen 502 RIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-G 579 (835)
T ss_pred HHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-c
Confidence 888765422222222 222344556677888887764443123444 34555554332 23467888888888887 5
Q ss_pred CCCCHHHHHHH
Q 007193 440 VIPNLVMFKCI 450 (613)
Q Consensus 440 ~~p~~~~~~~l 450 (613)
+.|...-+-.|
T Consensus 580 Cpp~~aKtiyL 590 (835)
T KOG2047|consen 580 CPPEHAKTIYL 590 (835)
T ss_pred CCHHHHHHHHH
Confidence 66554433333
No 58
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.28 E-value=5.1e-09 Score=98.13 Aligned_cols=195 Identities=16% Similarity=0.100 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007193 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (613)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 208 (613)
.+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 33444444444444444444444444332 2223344444444444444444444444444332 222333334444444
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007193 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (613)
Q Consensus 209 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 288 (613)
..|++++|.+.+.+..... ..+.....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|
T Consensus 111 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDP-LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HcccHHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 4444444444444443210 011112233333344444444444444444444332 22233344444444444444444
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007193 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328 (613)
Q Consensus 289 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 328 (613)
...+++..... ..+...+..+...+...|+.++|..+.+
T Consensus 189 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 227 (234)
T TIGR02521 189 RAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGA 227 (234)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44444443331 1122333333333334444444444433
No 59
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.28 E-value=2.3e-10 Score=116.99 Aligned_cols=253 Identities=18% Similarity=0.185 Sum_probs=180.4
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 007193 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227 (613)
Q Consensus 148 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 227 (613)
.++..+...|+.||.+||.++|.-||..|+++.|- +|.-|..+..+.+...|+.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45677888999999999999999999999999998 9999988877888999999999998888876543
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHh----cCCCCCHHHHH---------------HHHHHHHhcCCH
Q 007193 228 HPVDPDHITIGALMKACANAGQVDR---AREVYKMIHK----YNIKGTPEVYT---------------IAINCCSQTGDW 285 (613)
Q Consensus 228 ~~~~~~~~~~~~ll~~~~~~g~~~~---A~~~~~~~~~----~~~~~~~~~~~---------------~li~~~~~~g~~ 285 (613)
.|...+|+.|..+|...|++.. ..+.+..+.. .|+ .....|- ..+......|.+
T Consensus 80 ---ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gv-gs~e~~fl~k~~c~p~~lpda~n~illlv~eglw 155 (1088)
T KOG4318|consen 80 ---EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGV-GSPERWFLMKIHCCPHSLPDAENAILLLVLEGLW 155 (1088)
T ss_pred ---CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhcc-CcHHHHHHhhcccCcccchhHHHHHHHHHHHHHH
Confidence 4667799999999999999755 2222221111 121 1111111 122233344555
Q ss_pred HHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 007193 286 EFACSVYDDMTKKGV-IPDEVFLSALIDFAGHAGK-VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363 (613)
Q Consensus 286 ~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (613)
+.+++++..+..... .|..+ +++-+..... +++-..+...... .|++.+|..+++.-...|+.+.|..++.
T Consensus 156 aqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~ 228 (1088)
T KOG4318|consen 156 AQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLY 228 (1088)
T ss_pred HHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHH
Confidence 555555555433211 11111 2333333222 2222222222222 5899999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCH
Q 007193 364 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425 (613)
Q Consensus 364 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 425 (613)
+|.+.|++.+..-|..|+-+ .+...-+..+++-|.+.|+.|+..|+...+..|..+|..
T Consensus 229 emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t 287 (1088)
T KOG4318|consen 229 EMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQT 287 (1088)
T ss_pred HHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhh
Confidence 99999999998888888777 777888888999999999999999999888887775543
No 60
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.27 E-value=5.3e-09 Score=98.03 Aligned_cols=200 Identities=14% Similarity=0.056 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007193 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (613)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 313 (613)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 3445555566666666666666666665543 334555666666666666666666666666655432 34455555666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC-CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhH
Q 007193 314 AGHAGKVEAAFEILQEAKNQGI-SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392 (613)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 392 (613)
+...|++++|...+....+... +.....+..+...+...|++++|...|.+..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 6666677777766666655321 2233455556666777777777777777766543 2335566667777777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 393 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
|...+++..+. .+.+...+..+...+...|+.++|..+.+.+.+
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77777776664 233455556666666777777777777666543
No 61
>PRK12370 invasion protein regulator; Provisional
Probab=99.26 E-value=1e-08 Score=108.40 Aligned_cols=249 Identities=10% Similarity=0.040 Sum_probs=153.7
Q ss_pred CCHHHHHHHHHHHHc-----cCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHH---------hcCChHHHHHHHHH
Q 007193 195 PDRVVFNALITACGQ-----SGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACA---------NAGQVDRAREVYKM 259 (613)
Q Consensus 195 p~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~~~~~-~~~~~~ll~~~~---------~~g~~~~A~~~~~~ 259 (613)
.+...|...+.+-.. .++.++|..+|++.... .|+ ...+..+..+|. ..+++++|...+++
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l----dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~ 329 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM----SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIK 329 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc----CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHH
Confidence 344455544444211 13456788888877753 343 344544444333 22346788888888
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH
Q 007193 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339 (613)
Q Consensus 260 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 339 (613)
..+.+ +.+...+..+...+...|++++|...|++..+.++. +...+..+...+...|++++|...++...+... .+.
T Consensus 330 Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P-~~~ 406 (553)
T PRK12370 330 ATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDP-TRA 406 (553)
T ss_pred HHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCh
Confidence 87776 556777777777778888888888888888776543 455677777778888888888888888877652 223
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHH-HHHHH
Q 007193 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS-ILLVA 418 (613)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~a 418 (613)
..+..++..+...|++++|...+++..+...+.+...+..+...+...|+.++|...+.++... .|+..+.. .+...
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~ 484 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAE 484 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHH
Confidence 3333344456667788888888877765431223455666777777888888888888776553 45444433 33345
Q ss_pred HhhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHH
Q 007193 419 CERKDDVEVGLMLLSQAKE-DGVIPNLVMFKCIIGMC 454 (613)
Q Consensus 419 ~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~ 454 (613)
+...| +.+...++.+.+ ..-.|.......++..+
T Consensus 485 ~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~ 519 (553)
T PRK12370 485 YCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVA 519 (553)
T ss_pred HhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHH
Confidence 56666 366666666554 23334333334455444
No 62
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=5.6e-08 Score=95.37 Aligned_cols=287 Identities=14% Similarity=0.059 Sum_probs=222.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007193 122 GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201 (613)
Q Consensus 122 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 201 (613)
+...++.......+-+...+++.+..++++.+.+.. +++...+..-|..+...|+..+-..+=.++.+. .+-...+|-
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~ 316 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWF 316 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchh
Confidence 445567777777788888899999999999988765 667777777788888999888888777788766 244577899
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 007193 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281 (613)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 281 (613)
++.--|...|...+|.+.|.+...-...+ ...|-.....|+-.|..+.|...+....+.= +...-.+--+.--|.+
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD~~f---gpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~ 392 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLDPTF---GPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMR 392 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcCccc---cHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHH
Confidence 98888888899999999999876432222 3478888889999999999998887665531 1111122223445778
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C--CCcCHHhHHHHHHHHHhcCCH
Q 007193 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ----G--ISVGIISYSSLMGACSNAKNW 355 (613)
Q Consensus 282 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~--~~~~~~~~~~li~~~~~~g~~ 355 (613)
.+..+.|.+.|.+.....+. |+...+-+.-.....+.+.+|..+|+..... + ..--..+++.|..+|.+++.+
T Consensus 393 t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred hccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 89999999999988766433 6677777766667778899999999887622 1 112345689999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007193 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418 (613)
Q Consensus 356 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 418 (613)
++|+..|++..... +.+..++.++.-.|...|+++.|.+.|.+..- +.||..+.+.++..
T Consensus 472 ~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 472 EEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKL 531 (611)
T ss_pred HHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHH
Confidence 99999999988754 57889999999999999999999999999876 68999888887763
No 63
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=5.3e-06 Score=82.24 Aligned_cols=421 Identities=15% Similarity=0.123 Sum_probs=243.7
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHH--HHHHH--
Q 007193 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNM--LMSVC-- 102 (613)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--li~~~-- 102 (613)
.-....|...++|++++|.+...++...+ |.+......-.-...+.+.+++|+++.+.-... .+++. +=.+|
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCE 89 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHH
Confidence 33445567778999999999999999877 554443333333456778899999777654321 11122 23443
Q ss_pred HcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007193 103 ASSKDSEGAFQVLRLVQEAGLKA-DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181 (613)
Q Consensus 103 ~~~~~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 181 (613)
.+.+..++|+..+. |..+ |..+...-...+.+.|++++|..+|..+.+.+.+ + +...+.+-+-. ...+
T Consensus 90 Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d---~d~~~r~nl~a--~~a~ 158 (652)
T KOG2376|consen 90 YRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-D---QDEERRANLLA--VAAA 158 (652)
T ss_pred HHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-h---HHHHHHHHHHH--HHHh
Confidence 46889999998887 3333 3446666677888999999999999999876422 2 22222111100 0001
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHH---HHHHccCCHHHHHHHHHHHhh--------CCCC---CCCCHH-HHHHHHHHHHh
Q 007193 182 FGAYGIMRSKNVKPDRVVFNALI---TACGQSGAVDRAFDVLAEMNA--------EVHP---VDPDHI-TIGALMKACAN 246 (613)
Q Consensus 182 ~~~~~~m~~~g~~p~~~~~~~li---~~~~~~g~~~~a~~~~~~m~~--------~~~~---~~~~~~-~~~~ll~~~~~ 246 (613)
... +.+......| ..+|..+. ..+...|++.+|+++++.... ...+ +..+.. .-..+...+-.
T Consensus 159 l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 159 LQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred hhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 111 0122222233 23444433 345567888888888877621 1000 000111 11234455667
Q ss_pred cCChHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhc-----------------------------------------
Q 007193 247 AGQVDRAREVYKMIHKYNIKGTP---EVYTIAINCCSQT----------------------------------------- 282 (613)
Q Consensus 247 ~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~----------------------------------------- 282 (613)
.|+.++|..++..+.+.+....+ ..-|.++..-...
T Consensus 237 ~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL 316 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALL 316 (652)
T ss_pred hcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888887776532211 1112222111000
Q ss_pred ----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHH
Q 007193 283 ----GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA--GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356 (613)
Q Consensus 283 ----g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 356 (613)
+..+.+.++.... .+-.|. ..+..++..+.+. .....+..++...-+....-...+.-..+......|+++
T Consensus 317 ~l~tnk~~q~r~~~a~l--p~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~ 393 (652)
T KOG2376|consen 317 ALFTNKMDQVRELSASL--PGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPE 393 (652)
T ss_pred HHHhhhHHHHHHHHHhC--CccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Confidence 1111111111111 112232 3344444443322 245667777776665543333556677778889999999
Q ss_pred HHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC--CCCCCHHH----HHHHHHHHhhc
Q 007193 357 KALELYE--------HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL--GLCPNTIT----YSILLVACERK 422 (613)
Q Consensus 357 ~A~~~~~--------~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t----~~~ll~a~~~~ 422 (613)
.|.+++. .+.+.+..|-. ..++...+.+.+..+-|..++.+.... .-.+.... +.-+...-.+.
T Consensus 394 ~A~~il~~~~~~~~ss~~~~~~~P~~--V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~ 471 (652)
T KOG2376|consen 394 VALEILSLFLESWKSSILEAKHLPGT--VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRH 471 (652)
T ss_pred HHHHHHHHHhhhhhhhhhhhccChhH--HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhc
Confidence 9999999 66665545544 455677777777777788877776541 01222233 33333344567
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-hHHHHHHhhhhhhc
Q 007193 423 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR-RYEKARTLNEHVLS 470 (613)
Q Consensus 423 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~~~~a~~~~~~~~~ 470 (613)
|+-++|...++++.+. ..+|..+...+|.+|++ .-++|..+...+..
T Consensus 472 G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~d~eka~~l~k~L~p 519 (652)
T KOG2376|consen 472 GNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARLDPEKAESLSKKLPP 519 (652)
T ss_pred CchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhcCHHHHHHHhhcCCC
Confidence 9999999999999984 35788899999999998 77888887776543
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.18 E-value=3.9e-09 Score=96.17 Aligned_cols=228 Identities=15% Similarity=0.009 Sum_probs=106.5
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 007193 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281 (613)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 281 (613)
.+.++|.+.|.+.+|.+.|..-... .|-+.||..|-+.|.+..+++.|+.+|.+-.+. ++.++....-+...+-.
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q----~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ----FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc----CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 3444555555555555555444332 233334444455555555555555555444433 12232223334444444
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHH
Q 007193 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361 (613)
Q Consensus 282 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 361 (613)
.++.++|.++++...+.... ++.....+...|.-.++++.|+.+++++.+.|+ .++..|+.+.-+|.-.++++-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence 45555555555555444322 333444444444445555555555555555542 2344455554455555555555555
Q ss_pred HHHHHhCCCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 362 YEHMKSIKLKPT--VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 362 ~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
|.+....--.|+ ...|-.+-......|++.-|.+.|+-....+ .-+...++.+.-.-.+.|++++|+.++.....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 554443222222 2334444444445555555555555544432 22334455554445555555555555555443
No 65
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.17 E-value=2.2e-07 Score=95.03 Aligned_cols=290 Identities=13% Similarity=0.130 Sum_probs=173.5
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHc-----
Q 007193 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA-LITACGQ----- 209 (613)
Q Consensus 136 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-li~~~~~----- 209 (613)
.+...|++++|++.++.-... +.............+.+.|+.++|..+|..+... .|+...|.. +..+..-
T Consensus 13 il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcccc
Confidence 345666677776666554332 1222334445556666667777777777777666 344444433 3333311
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007193 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV-DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (613)
Q Consensus 210 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 288 (613)
..+.+...++++++... -|.......+.-.+..-..+ ..+...+..+..+|+| .+|+.+-..|....+.+-.
T Consensus 90 ~~~~~~~~~~y~~l~~~----yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEK----YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccHHHHHHHHHHHHHh----CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence 12455666666666543 12222222221111111122 2344455666667754 4666676666655555555
Q ss_pred HHHHHHHHHC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhc
Q 007193 289 CSVYDDMTKK----G----------VIPDE--VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352 (613)
Q Consensus 289 ~~~~~~m~~~----g----------~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 352 (613)
.+++...... + -.|.. .++..+...|...|++++|+++.+..+.+. |..+..|..-...+-+.
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHC
Confidence 5555554321 1 12333 244556677788899999999998888875 33467788888888889
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHH------H--HHHHHHHhhcCC
Q 007193 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT------Y--SILLVACERKDD 424 (613)
Q Consensus 353 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t------~--~~ll~a~~~~g~ 424 (613)
|++.+|.+.++.....+ .-|...-+-.+..+.++|+.++|.+++....+.+..|-... | .-...+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999888888765 34555666677778888999999988888776654442211 1 233467888898
Q ss_pred HHHHHHHHHHHHH
Q 007193 425 VEVGLMLLSQAKE 437 (613)
Q Consensus 425 ~~~a~~~~~~m~~ 437 (613)
+..|++-|..+.+
T Consensus 321 ~~~ALk~~~~v~k 333 (517)
T PF12569_consen 321 YGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHH
Confidence 8888877766554
No 66
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.14 E-value=1.9e-07 Score=95.64 Aligned_cols=288 Identities=14% Similarity=0.117 Sum_probs=179.9
Q ss_pred HhhhHHHHHHHHHHHhCC--CCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-----CC
Q 007193 71 CKSQKAIKEAFRFFKLVP--NPT-LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS-----GK 142 (613)
Q Consensus 71 ~~~~~~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----g~ 142 (613)
....|++++|+.+++... -.| ..........+.+.|+.++|..+++.+.+.+ +.+..-|..+..+..-. .+
T Consensus 14 l~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~~~ 92 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSDED 92 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccccccc
Confidence 344555666666655432 123 3344555677888888888888888888875 44455555555555222 24
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 007193 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV-AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA 221 (613)
Q Consensus 143 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 221 (613)
.+...++|+++... -|.......+.-.+..-..+ ..+...+..+..+|++ .+|+.|-..|.......-..+++.
T Consensus 93 ~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 93 VEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred HHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHH
Confidence 56677788877654 23333333222222222223 2445556667777753 356666666665555555555555
Q ss_pred HHhhCC------------CCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 007193 222 EMNAEV------------HPVDPDHI--TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287 (613)
Q Consensus 222 ~m~~~~------------~~~~~~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 287 (613)
...... ..-+|... ++..+...|...|++++|..++++..+.. +..+..|..-...+-+.|++.+
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHH
Confidence 543210 01134443 33455677788888999999888888875 4446778888888888899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHh--------HHHHHHHHHhcCCHHHHH
Q 007193 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS--------YSSLMGACSNAKNWQKAL 359 (613)
Q Consensus 288 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--------~~~li~~~~~~g~~~~A~ 359 (613)
|.+.++.....+.. |...-+.....+.+.|++++|.+++....+.+..|-... ......+|.+.|++..|+
T Consensus 247 Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~AL 325 (517)
T PF12569_consen 247 AAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLAL 325 (517)
T ss_pred HHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 98888888887765 777777778888888888888888888877654222111 133456677777777777
Q ss_pred HHHHHHH
Q 007193 360 ELYEHMK 366 (613)
Q Consensus 360 ~~~~~m~ 366 (613)
+.|..+.
T Consensus 326 k~~~~v~ 332 (517)
T PF12569_consen 326 KRFHAVL 332 (517)
T ss_pred HHHHHHH
Confidence 7666554
No 67
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.13 E-value=6e-09 Score=94.96 Aligned_cols=238 Identities=13% Similarity=0.072 Sum_probs=178.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHH
Q 007193 161 NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240 (613)
Q Consensus 161 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~l 240 (613)
|-.--+.+..+|.+.|.+.+|.+.|+.-.+. .|-..||..|-+.|.+..+.+.|+.++.+-... ++-|+....-+
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~---fP~~VT~l~g~ 296 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS---FPFDVTYLLGQ 296 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc---CCchhhhhhhh
Confidence 3333466778888888888888888887776 566677777888888888888888888877653 23344444456
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007193 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320 (613)
Q Consensus 241 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 320 (613)
...+-..++.++|.++++...+.. +.++.....+...|.-.++++.|++.++++...|+. +...|..+.-+|.-.+++
T Consensus 297 ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 297 ARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQI 374 (478)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcch
Confidence 677778888888888888887765 556666777777888888888888888888888876 677788887788888888
Q ss_pred HHHHHHHHHHHHCCCCcC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHH
Q 007193 321 EAAFEILQEAKNQGISVG--IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398 (613)
Q Consensus 321 ~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 398 (613)
+-++.-|.+....-..|+ ..+|..|-......|++..|.+.|+-....+ ..+...+|.|.-.-.+.|+.++|..+++
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 888888887766543333 3466677777778888888888888777654 3456778888877888888888888888
Q ss_pred HHHhCCCCCC
Q 007193 399 DMKSLGLCPN 408 (613)
Q Consensus 399 ~m~~~g~~p~ 408 (613)
.... +.|+
T Consensus 454 ~A~s--~~P~ 461 (478)
T KOG1129|consen 454 AAKS--VMPD 461 (478)
T ss_pred Hhhh--hCcc
Confidence 7765 3454
No 68
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.13 E-value=7.1e-06 Score=82.27 Aligned_cols=389 Identities=13% Similarity=0.117 Sum_probs=198.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChHHHHH
Q 007193 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQ 113 (613)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~ 113 (613)
..+++...+.+.+.+.++. |......+..+-.....|+-++|........ ..+.+.|..+.-.+-...++++|+.
T Consensus 19 E~kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHH
Confidence 3456666666666666533 3333333333323334455566665555433 2345566666666666666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-
Q 007193 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN- 192 (613)
Q Consensus 114 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g- 192 (613)
.|+.....+ +.|...+.-+.-.-++.|+++-.......+.+.. +.....|..+..++.-.|+...|..+.++..+..
T Consensus 97 cy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 666666554 4445555555444455566655555555554432 2234456666666666666666666666665442
Q ss_pred CCCCHHHHHHHH------HHHHccCCHHHHHHHHHHHhhCCCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 007193 193 VKPDRVVFNALI------TACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT-IGALMKACANAGQVDRAREVYKMIHKYNI 265 (613)
Q Consensus 193 ~~p~~~~~~~li------~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 265 (613)
-.|+...+.-.. ....+.|..++|.+.+..-... ..|... -.+-...+.+.+++++|..++..+..++
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~----i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn- 249 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ----IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN- 249 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH----HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-
Confidence 134444333221 1233445555555555443221 112222 2223345556666666666666665553
Q ss_pred CCCHHHHHHHHHHHHhcC-----------------------------------CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007193 266 KGTPEVYTIAINCCSQTG-----------------------------------DWEFACSVYDDMTKKGVIPDEVFLSAL 310 (613)
Q Consensus 266 ~~~~~~~~~li~~~~~~g-----------------------------------~~~~a~~~~~~m~~~g~~p~~~~~~~l 310 (613)
+.+..-|-.+..++.+-. -.+..-+++..+.+.|+.+ ++..+
T Consensus 250 Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl 326 (700)
T KOG1156|consen 250 PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDL 326 (700)
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhh
Confidence 222222222222222111 1222333444444555442 23333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH----CC----------CCcCHHhH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 007193 311 IDFAGHAGKVEAAFEILQEAKN----QG----------ISVGIISY--SSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374 (613)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~~~~----~~----------~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 374 (613)
.+.|-.....+-..++.-.+.. .| -+|....| -.++..|-+.|+++.|....+....+ .|+.
T Consensus 327 ~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTl 404 (700)
T KOG1156|consen 327 RSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTL 404 (700)
T ss_pred HHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchH
Confidence 3333222211111111111111 11 13444433 34566777888888888888877764 4653
Q ss_pred -HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCC
Q 007193 375 -STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440 (613)
Q Consensus 375 -~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~ 440 (613)
..|..=.+.+...|.+++|...+++..+.. .||...-+--..-..+..+.++|..+.....+.|.
T Consensus 405 iEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 405 IELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 345555677788888888888888877654 34544433444444567788888888888877664
No 69
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=8e-06 Score=77.44 Aligned_cols=398 Identities=12% Similarity=0.037 Sum_probs=179.3
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCC------------------CCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCC
Q 007193 28 QLHSYNRLIRQGRISECIDLLEDMERKGL------------------LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN 89 (613)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~l~~~m~~~~~------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 89 (613)
-.+.++.+-+...+..|.+-|....+... .+.+.......+..+...++-+.|.....++|+
T Consensus 46 l~yl~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~ 125 (564)
T KOG1174|consen 46 LLYLLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPP 125 (564)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCc
Confidence 34455555677788888888887665421 122233333444555566677788888887774
Q ss_pred C-CHHHHHHHHHHHHcCCC-hHHHHHHHHHHH--------------HcC---------------CCCCHHHHHHHHHHHH
Q 007193 90 P-TLSTFNMLMSVCASSKD-SEGAFQVLRLVQ--------------EAG---------------LKADCKLYTTLITTCA 138 (613)
Q Consensus 90 ~-~~~~~~~li~~~~~~~~-~~~A~~~~~~m~--------------~~g---------------~~~~~~~~~~li~~~~ 138 (613)
. ...--|.|+.-+-+.|- -.++.--+.... +.+ ++|...+....+.+++
T Consensus 126 t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~A 205 (564)
T KOG1174|consen 126 TLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALA 205 (564)
T ss_pred cccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHH
Confidence 3 33334444444333321 111111111111 111 1122222222233332
Q ss_pred Hc--CChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHccCCHH
Q 007193 139 KS--GKVDAMFEVFHEMVNA-GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN-ALITACGQSGAVD 214 (613)
Q Consensus 139 ~~--g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~ 214 (613)
.+ ++...+.+.+-.+... -++-|+.....+...+...|+..+|...|++.... .|+..+-- .-.-.+.+.|+.+
T Consensus 206 q~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e 283 (564)
T KOG1174|consen 206 QMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCE 283 (564)
T ss_pred HHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHh
Confidence 22 2222333333222211 12344555555555556666666666666555533 22222110 1111223444555
Q ss_pred HHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007193 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294 (613)
Q Consensus 215 ~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 294 (613)
....+...+.... .-....|-.-........+++.|+.+-++..+.+ +.+...+-.-...+...+++++|.-.|+.
T Consensus 284 ~~~~L~~~Lf~~~---~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~ 359 (564)
T KOG1174|consen 284 QDSALMDYLFAKV---KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRT 359 (564)
T ss_pred hHHHHHHHHHhhh---hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHH
Confidence 4444444443210 0111111111222233345555555555554443 22333343334445555666666666655
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHH-HHHH-hcCCHHHHHHHHHHHHhCCCCC
Q 007193 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACS-NAKNWQKALELYEHMKSIKLKP 372 (613)
Q Consensus 295 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~g~~~~A~~~~~~m~~~~~~~ 372 (613)
.+...+ -+...|..|+..|...|++.+|.-+-+...+. ++-+..+.+.+. ..+. ...--++|.++++.-... .|
T Consensus 360 Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P 435 (564)
T KOG1174|consen 360 AQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NP 435 (564)
T ss_pred HHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CC
Confidence 554422 14455666666666666666555554444332 122333333321 1111 111224555555544432 34
Q ss_pred C-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 373 T-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 373 ~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
+ ....+.+...+...|..++++.+++.... ..||....+.+...+.....+++|...|.....
T Consensus 436 ~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 436 IYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred ccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4 23444455555556666666666655544 245666666666666666666666666555554
No 70
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.10 E-value=1.1e-07 Score=96.02 Aligned_cols=240 Identities=17% Similarity=0.135 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhC---CCC-CCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHhc-----C--
Q 007193 197 RVVFNALITACGQSGAVDRAFDVLAEMNAE---VHP-VDPDHIT-IGALMKACANAGQVDRAREVYKMIHKY-----N-- 264 (613)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~-~~~~~~~-~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~-- 264 (613)
..+...+...|...|+++.|..++...... ..| ..|.+.+ .+.+...|...+++++|..+|+++... |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 446666888999999999999998876542 112 1233332 334667888999999999999887542 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCC-CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C
Q 007193 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-----KGVI-PDE-VFLSALIDFAGHAGKVEAAFEILQEAKNQ---G 334 (613)
Q Consensus 265 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~-p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~ 334 (613)
.+.-..+++.|...|.+.|++++|...+++..+ .|.. |.. ..++.+...|+..+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 111245677888889999999998888877543 1222 222 34667777888999999999998876543 1
Q ss_pred CCc----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHcCCChhHHHHHHHHHHh-
Q 007193 335 ISV----GIISYSSLMGACSNAKNWQKALELYEHMKSI----KLK--P-TVSTMNALITALCDGDQLPKTMEVLSDMKS- 402 (613)
Q Consensus 335 ~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~- 402 (613)
+.+ -..+++.|...|.+.|++++|.++|+..... +.+ + ....++.|...|.+.+++.+|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 112 2457899999999999999999999987642 111 1 245678888999999999999999987543
Q ss_pred ---CCC-CCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 007193 403 ---LGL-CPN-TITYSILLVACERKDDVEVGLMLLSQAK 436 (613)
Q Consensus 403 ---~g~-~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 436 (613)
.|. .|+ ..+|..|...|...|+++.|.++.+.+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 221 223 3678899999999999999999998776
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.08 E-value=2.8e-07 Score=93.17 Aligned_cols=239 Identities=16% Similarity=0.137 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-C
Q 007193 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNA-----GI-EPNVH-TYGALIDGCAKAGQVAKAFGAYGIMRSK-----N-V 193 (613)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~ 193 (613)
..+...|...|...|+++.|..++....+. |. .|... ..+.+...|...+++.+|..+|+++... | .
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 445556778888888888888888776543 21 12222 2333556677777777777777776532 2 1
Q ss_pred CCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCC---CCC-CCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcC---
Q 007193 194 KPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEV---HPV-DPDH-ITIGALMKACANAGQVDRAREVYKMIHKYN--- 264 (613)
Q Consensus 194 ~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~~-~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--- 264 (613)
.|. ..+++.|..+|.+.|++++|...+++..... .+. .|.+ ..++.+...++..+++++|..++++..+.-
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 121 3356666667777777776666655543210 011 1221 223445555666666666666665443210
Q ss_pred CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 265 IKG----TPEVYTIAINCCSQTGDWEFACSVYDDMTKK----GV--IP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (613)
Q Consensus 265 ~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~--~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (613)
..+ -..+++.|...|.+.|++++|.++|++.... +. .+ ....++.+...|.+.+...+|.++|.+....
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 011 1234566666666666666666666655431 11 11 1233445555555555555555555443211
Q ss_pred ----C--CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 334 ----G--ISVGIISYSSLMGACSNAKNWQKALELYEHM 365 (613)
Q Consensus 334 ----~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (613)
| .+....+|..|...|.+.|+++.|.++.+..
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 1 1112234444555555555555555444443
No 72
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=5.8e-06 Score=76.71 Aligned_cols=389 Identities=11% Similarity=0.043 Sum_probs=233.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCCh
Q 007193 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDS 108 (613)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~ 108 (613)
..-++.+.++..|+.+++--...+- .....+..-+...+-..|++++|+..|..+. .++...|-.+.-.+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence 4557788999999999987654432 1222334444555667899999999998754 45666777776666667888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (613)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (613)
.+|.++-... +.++-.-..|+....+.++-++-..+...+.. ...---+|.+..-..-.+.+|++++.+.
T Consensus 108 ~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 8888875543 33344455566777788888887777777653 2233445555555556789999999999
Q ss_pred HhCCCCCCHHHHHHHH-HHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 007193 189 RSKNVKPDRVVFNALI-TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267 (613)
Q Consensus 189 ~~~g~~p~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 267 (613)
... .|+-...|.-+ -+|.+..-++-+.+++.-..+. ++.+....|.......+.=.-..|..-...+.+.+-..
T Consensus 178 L~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q---~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~ 252 (557)
T KOG3785|consen 178 LQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ---FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE 252 (557)
T ss_pred Hhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh---CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc
Confidence 876 46666666444 4667777788888888777654 33344555544444444322233333334443332111
Q ss_pred CHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhH
Q 007193 268 TPEVYTIAINCCSQT-----GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342 (613)
Q Consensus 268 ~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 342 (613)
...+.-.+++ ..-+.|++++-.+.+. .|. .-..++-.|.+.+++.+|..+.+.+.-. .|-....
T Consensus 253 -----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~Eyil 321 (557)
T KOG3785|consen 253 -----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYIL 321 (557)
T ss_pred -----chhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHH
Confidence 1223333443 3446777777666553 332 2234455677888888888877665321 2222222
Q ss_pred HHHHHHHHhcC-------CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 007193 343 SSLMGACSNAK-------NWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414 (613)
Q Consensus 343 ~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 414 (613)
-.++ ++..| .+.-|.+.|+-.-+.+..-| +.--.++.+.+.-..++++.+..+.....- +..|...--.
T Consensus 322 Kgvv--~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N 398 (557)
T KOG3785|consen 322 KGVV--FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLN 398 (557)
T ss_pred HHHH--HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhH
Confidence 2222 22222 35566677766655544333 223445666666777888888888777664 3334333345
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007193 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451 (613)
Q Consensus 415 ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 451 (613)
+..|.+..|++.+|.++|-++....+ .|..+|.+++
T Consensus 399 ~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~L 434 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSML 434 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHH
Confidence 67888889999999988866653222 3455666554
No 73
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=5.8e-06 Score=80.08 Aligned_cols=154 Identities=12% Similarity=0.081 Sum_probs=105.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHH
Q 007193 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359 (613)
Q Consensus 280 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 359 (613)
.-.|+.-.|.+-|+........++. .|--+..+|.+..+.++....|....+.+ +-++.+|..-..++.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHH
Confidence 3456677777777777776554333 25555566777777777777777777765 456667777677777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 360 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
.=|++..+.. +-+...|-.+-.+.-+.+++++++..|++.++. ++-.+..|+.....+...++++.|.+.|+..++
T Consensus 415 aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 415 ADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 7777777643 233555666666666777777777777777664 444566777777777777777777777777765
No 74
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.01 E-value=3.5e-05 Score=77.46 Aligned_cols=354 Identities=13% Similarity=0.103 Sum_probs=235.4
Q ss_pred hhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 007193 73 SQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149 (613)
Q Consensus 73 ~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 149 (613)
..+++...+++.+.+. +....|.....-.+...|+-++|....+.-.+.. ..+.+.|..+.-.+....++++|++.
T Consensus 19 E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHH
Confidence 3455666666655543 2234454444445677899999999988888754 55788999998888888999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC
Q 007193 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 229 (613)
Q Consensus 150 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 229 (613)
|......+ +-|...|.-+.-.-++.|+++.....-.++.+.. +-....|..+..++.-.|+...|..++++..+...
T Consensus 98 y~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~- 174 (700)
T KOG1156|consen 98 YRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN- 174 (700)
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-
Confidence 99999876 5577888877777788889888888877777652 33456788888899999999999999999877532
Q ss_pred CCCCHHHHHHHH------HHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 007193 230 VDPDHITIGALM------KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303 (613)
Q Consensus 230 ~~~~~~~~~~ll------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 303 (613)
..|+...+.-.. ......|.++.|.+.+...... +......-.+-...+.+.+++++|..++..+.... ||
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pd 251 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PD 251 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--ch
Confidence 345555554332 3456678888888887665443 22223344566778899999999999999999874 66
Q ss_pred HHHHHHHHHHHH-hcCCHHHHH-HHHHHHH----------------------------------HCCCCcCHHhHHHHHH
Q 007193 304 EVFLSALIDFAG-HAGKVEAAF-EILQEAK----------------------------------NQGISVGIISYSSLMG 347 (613)
Q Consensus 304 ~~~~~~li~~~~-~~g~~~~a~-~~~~~~~----------------------------------~~~~~~~~~~~~~li~ 347 (613)
..-|...+..+. +..+.-++. .+|.... +.|+++ ++..+..
T Consensus 252 n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~S 328 (700)
T KOG1156|consen 252 NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRS 328 (700)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHH
Confidence 666655544333 232323333 4444433 233222 2222222
Q ss_pred HHHhcCCHH----HHHHHHHHHHhCC----------CCCCHHHHHH--HHHHHHcCCChhHHHHHHHHHHhCCCCCCH-H
Q 007193 348 ACSNAKNWQ----KALELYEHMKSIK----------LKPTVSTMNA--LITALCDGDQLPKTMEVLSDMKSLGLCPNT-I 410 (613)
Q Consensus 348 ~~~~~g~~~----~A~~~~~~m~~~~----------~~~~~~~~~~--li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~ 410 (613)
.|-.....+ -+..+...+...| -+|+...|+. ++..|-+.|+++.|...++..... .|+. .
T Consensus 329 Lyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliE 406 (700)
T KOG1156|consen 329 LYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIE 406 (700)
T ss_pred HHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHH
Confidence 221111111 0111111111111 1566666654 677788999999999999998874 6765 4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 007193 411 TYSILLVACERKDDVEVGLMLLSQAKED 438 (613)
Q Consensus 411 t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (613)
.|..=.+.+.+.|++++|..++++..+.
T Consensus 407 ly~~KaRI~kH~G~l~eAa~~l~ea~el 434 (700)
T KOG1156|consen 407 LYLVKARIFKHAGLLDEAAAWLDEAQEL 434 (700)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc
Confidence 4666668899999999999999998864
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.99 E-value=1e-06 Score=85.36 Aligned_cols=219 Identities=11% Similarity=-0.026 Sum_probs=131.1
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007193 211 GAVDRAFDVLAEMNAEVHPVDPD--HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (613)
Q Consensus 211 g~~~~a~~~~~~m~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 288 (613)
+..+.+..-+.++.... ...|+ ...|..+...|.+.|+.++|...|++..+.+ +.+...|+.+...+...|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~~-~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASR-DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccc-cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 34555555565555431 22222 2345566666777777778877777777765 45667777777778888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007193 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368 (613)
Q Consensus 289 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (613)
...|+...+..+. +..++..+..++...|++++|.+.++...+.. |+..........+...++.++|...|.+....
T Consensus 118 ~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 8888777765433 45566667777777788888888887777654 22221122222234566778888888654432
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC---C--CCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 007193 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL---G--LCP-NTITYSILLVACERKDDVEVGLMLLSQAKEDG 439 (613)
Q Consensus 369 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g--~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g 439 (613)
. .|+. |.. .......|+..++ +.+..+.+. . +.| ....|..+...+.+.|++++|...|++..+.+
T Consensus 195 ~-~~~~--~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 L-DKEQ--WGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred C-Cccc--cHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 1 2222 221 1222234555444 344444321 0 111 23467777888888888888888888888743
No 76
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.96 E-value=4e-07 Score=88.15 Aligned_cols=205 Identities=12% Similarity=0.029 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007193 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (613)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (613)
..|..+...+...|+.++|...|+...+.. +.+...|+.+...+...|++++|.+.|+...+.. +-+..+|..+...+
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 346666666777777777777777777654 4456777777777777777777777777776653 23456666677777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHH
Q 007193 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252 (613)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 252 (613)
...|++++|.+.|++..+. .|+..........+...++.++|...|.+.... ..|+...+ .+. ....|+...
T Consensus 143 ~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~---~~~~~~~~-~~~--~~~lg~~~~ 214 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK---LDKEQWGW-NIV--EFYLGKISE 214 (296)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh---CCccccHH-HHH--HHHccCCCH
Confidence 7777777777777777665 333221111222233456677777777554431 12332221 222 223444433
Q ss_pred HHHHHHHHHh---cCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007193 253 AREVYKMIHK---YNI---KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309 (613)
Q Consensus 253 A~~~~~~~~~---~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 309 (613)
+ ..+..+.+ ... +.....|..+...+.+.|++++|...|++....++ ||.+-+..
T Consensus 215 ~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~-~~~~e~~~ 275 (296)
T PRK11189 215 E-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV-YNFVEHRY 275 (296)
T ss_pred H-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-chHHHHHH
Confidence 3 23333331 111 12245677777778888888888888887776653 24444433
No 77
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=2.1e-05 Score=73.11 Aligned_cols=168 Identities=10% Similarity=0.054 Sum_probs=106.7
Q ss_pred hhHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHc
Q 007193 27 EQLHSYNRLI--RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCAS 104 (613)
Q Consensus 27 ~~~~~~~~l~--~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 104 (613)
.++..|-+.+ +.|++++|...+.-+.+++-.| .. +...+.-...-.|.+.+|..+-.+.+. ++-.-..++...-+
T Consensus 57 ~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~-~e-l~vnLAcc~FyLg~Y~eA~~~~~ka~k-~pL~~RLlfhlahk 133 (557)
T KOG3785|consen 57 DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAP-AE-LGVNLACCKFYLGQYIEAKSIAEKAPK-TPLCIRLLFHLAHK 133 (557)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCC-cc-cchhHHHHHHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHH
Confidence 4677776666 8999999999999888765322 22 222233223345788899888777653 34445556666777
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCCHHHHHH
Q 007193 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI-DGCAKAGQVAKAFG 183 (613)
Q Consensus 105 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li-~~~~~~g~~~~A~~ 183 (613)
.++-++-..+.+.+... ..---+|.+.....-.+.+|++++...... .|+-...|.-+ -+|.+..-++-+.+
T Consensus 134 lndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqe 206 (557)
T KOG3785|consen 134 LNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQE 206 (557)
T ss_pred hCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHH
Confidence 78877777777766542 122334555555555788999999998866 45555555433 35667777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHH
Q 007193 184 AYGIMRSKNVKPDRVVFNALIT 205 (613)
Q Consensus 184 ~~~~m~~~g~~p~~~~~~~li~ 205 (613)
++.-..+. ++-++...|....
T Consensus 207 vl~vYL~q-~pdStiA~NLkac 227 (557)
T KOG3785|consen 207 VLKVYLRQ-FPDSTIAKNLKAC 227 (557)
T ss_pred HHHHHHHh-CCCcHHHHHHHHH
Confidence 77777665 2333445554443
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.92 E-value=2.2e-06 Score=75.09 Aligned_cols=196 Identities=16% Similarity=0.079 Sum_probs=98.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 007193 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211 (613)
Q Consensus 132 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 211 (613)
.|.-.|...|+...|.+-+++.++.. +.+..+|..+...|.+.|+.+.|.+-|++..+.. +-+-.+.|.--..+|..|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCC
Confidence 34444555555555555555555543 2234455555555555555555555555555432 223334444444555555
Q ss_pred CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007193 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291 (613)
Q Consensus 212 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 291 (613)
.+++|.+.|++.... +....-..+|..+.-+..+.|+.+.|...|++..+.+ +..+.+.-.+.....+.|++-.|...
T Consensus 118 ~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 118 RPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred ChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHH
Confidence 555555555555442 1111123344445444555555555555555555544 23334455555555555555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007193 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (613)
Q Consensus 292 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (613)
++.....+. ++..+.-..|..--..|+.+.+-+.=.++.+
T Consensus 196 ~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 196 LERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 555555444 4555555555555555555555444444433
No 79
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.91 E-value=1.4e-05 Score=80.36 Aligned_cols=20 Identities=15% Similarity=0.209 Sum_probs=11.3
Q ss_pred HHhhcCCHHHHHHHHHHHHH
Q 007193 418 ACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 418 a~~~~g~~~~a~~~~~~m~~ 437 (613)
++...|+.++|.+.+.....
T Consensus 316 ~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 316 YAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 34456666666666655543
No 80
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.90 E-value=1.8e-05 Score=79.55 Aligned_cols=91 Identities=15% Similarity=0.104 Sum_probs=43.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCCH--HHHHHHHHHH
Q 007193 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI-KGTP--EVYTIAINCC 279 (613)
Q Consensus 203 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~~--~~~~~li~~~ 279 (613)
+...+...|++++|.+.+++..... +.+...+..+...+...|++++|...+++...... .++. ..|..+...+
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~---p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELN---PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC---CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 3344555555555555555554421 22233444455555555555555555555444321 1111 1233445555
Q ss_pred HhcCCHHHHHHHHHHHH
Q 007193 280 SQTGDWEFACSVYDDMT 296 (613)
Q Consensus 280 ~~~g~~~~a~~~~~~m~ 296 (613)
...|++++|..++++..
T Consensus 197 ~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 197 LERGDYEAALAIYDTHI 213 (355)
T ss_pred HHCCCHHHHHHHHHHHh
Confidence 55555555555555543
No 81
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.90 E-value=2.5e-06 Score=74.72 Aligned_cols=196 Identities=11% Similarity=0.052 Sum_probs=115.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007193 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317 (613)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 317 (613)
..|.-.|...|+...|..-+++..+.+ +.+..+|..+...|.+.|..+.|.+-|+........ +....|....-+|..
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhC
Confidence 334455666666666666666666655 445556666666666666666666666666655433 444455555555666
Q ss_pred CCHHHHHHHHHHHHHCC-CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHH
Q 007193 318 GKVEAAFEILQEAKNQG-ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 396 (613)
Q Consensus 318 g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 396 (613)
|++++|...|+...... ..--..+|..+.-+..+.|+.+.|...|++..+.. +-...+.-.+.....+.|++-.|...
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHH
Confidence 66666666666655542 12223455555555566666666666666666543 12234455566666666677677666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 397 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 397 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
++.....+. ++..+....|..-...|+.+.+-++=.++.+
T Consensus 196 ~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 196 LERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 666655543 6666666666666666666666555555443
No 82
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.89 E-value=0.00013 Score=73.41 Aligned_cols=453 Identities=11% Similarity=0.154 Sum_probs=282.4
Q ss_pred hhhHHHHHHHH--hcCCH-HHHHHHHHHHHHcCCCCchHHHHHHHHHH-------Hh-------hhHHHHHHHHHHHhCC
Q 007193 26 SEQLHSYNRLI--RQGRI-SECIDLLEDMERKGLLDMDKVYHARFFNV-------CK-------SQKAIKEAFRFFKLVP 88 (613)
Q Consensus 26 ~~~~~~~~~l~--~~g~~-~~A~~l~~~m~~~~~~~~~~~~~~~l~~~-------~~-------~~~~~~~A~~~~~~~~ 88 (613)
+-++.+|-.+| +.|.. .+-..+|++..+.-. .....++..+-.- |- -++-++.++.++.+||
T Consensus 24 p~svk~W~RYIe~k~~sp~k~~~~lYERal~~lp-~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmp 102 (835)
T KOG2047|consen 24 PFSVKCWLRYIEHKAGSPDKQRNLLYERALKELP-GSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMP 102 (835)
T ss_pred chhHHHHHHHHHHHccCChHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCC
Confidence 45778898888 45544 445667788777542 3344444433111 10 1223444444444444
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 007193 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG-LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA 167 (613)
Q Consensus 89 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 167 (613)
..|-.-+....+.|++..-...|+.....- +.--...|...+......+-++-+..+++..++. ++..-+-
T Consensus 103 ----RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~ee 174 (835)
T KOG2047|consen 103 ----RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREE 174 (835)
T ss_pred ----HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHH
Confidence 568888888889999999999998877542 2223457888888888889999999999998854 4555777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHccCCHH---HHHHHHHHHhhCCCCCCCC--HHH
Q 007193 168 LIDGCAKAGQVAKAFGAYGIMRSKN------VKPDRVVFNALITACGQSGAVD---RAFDVLAEMNAEVHPVDPD--HIT 236 (613)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~li~~~~~~g~~~---~a~~~~~~m~~~~~~~~~~--~~~ 236 (613)
-|.-+++.+++++|.+.+....... .+.+-..|..+-+..+++-+.- ....++..+.. .-+| ...
T Consensus 175 yie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~----rftDq~g~L 250 (835)
T KOG2047|consen 175 YIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR----RFTDQLGFL 250 (835)
T ss_pred HHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc----cCcHHHHHH
Confidence 8888999999999999998876431 2445556777666666554332 23344544443 2455 467
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----------------cCC------HHHHHHHHHH
Q 007193 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ----------------TGD------WEFACSVYDD 294 (613)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----------------~g~------~~~a~~~~~~ 294 (613)
|++|.+-|.+.|.+++|..+|++....-.. ..-|+.+-+.|++ .++ ++-.+.-|+.
T Consensus 251 w~SLAdYYIr~g~~ekarDvyeeai~~v~t--vrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~ 328 (835)
T KOG2047|consen 251 WCSLADYYIRSGLFEKARDVYEEAIQTVMT--VRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFES 328 (835)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhhee--hhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHH
Confidence 899999999999999999999887665321 1223333333322 111 2223333444
Q ss_pred HHHCCC-----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc------CHHhHHHHHHHHHhcCCHHH
Q 007193 295 MTKKGV-----------IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV------GIISYSSLMGACSNAKNWQK 357 (613)
Q Consensus 295 m~~~g~-----------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~ 357 (613)
+..... .-++..|..-+. ...|+..+-...+.+..+. +.| -...|..+.+.|-..|+++.
T Consensus 329 lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~ 405 (835)
T KOG2047|consen 329 LMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDD 405 (835)
T ss_pred HHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHH
Confidence 333211 012223332222 2346677778888887765 122 13468888999999999999
Q ss_pred HHHHHHHHHhCCCCCC---HHHHHHHHHHHHcCCChhHHHHHHHHHHhCC----------CCC-------CHHHHHHHHH
Q 007193 358 ALELYEHMKSIKLKPT---VSTMNALITALCDGDQLPKTMEVLSDMKSLG----------LCP-------NTITYSILLV 417 (613)
Q Consensus 358 A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----------~~p-------~~~t~~~ll~ 417 (613)
|..+|++..+...+.- ..+|..-...=.++.+++.|+++.+.....- -.| +...|+.+++
T Consensus 406 aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~D 485 (835)
T KOG2047|consen 406 ARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYAD 485 (835)
T ss_pred HHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHH
Confidence 9999999887543222 3456666666778889999999988765321 111 2234666666
Q ss_pred HHhhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhhHHHHHHhhhhhhcccCCC-----cccchhhhH-------
Q 007193 418 ACERKDDVEVGLMLLSQAKEDGVI-PNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGR-----PQIENKWTS------- 484 (613)
Q Consensus 418 a~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~~------- 484 (613)
--...|-++..+.+++++++..+. |.+..--++. +++-.-.+++...++.+- |..-..|+.
T Consensus 486 leEs~gtfestk~vYdriidLriaTPqii~NyAmf------LEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ 559 (835)
T KOG2047|consen 486 LEESLGTFESTKAVYDRIIDLRIATPQIIINYAMF------LEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIK 559 (835)
T ss_pred HHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHH------HHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHH
Confidence 667788899999999999985544 4333222221 333333344444444431 223345665
Q ss_pred --------HHHHHHHHHHHcCCCCcHH
Q 007193 485 --------LALMVYREAIVAGTIPTVE 503 (613)
Q Consensus 485 --------~a~~~~~~m~~~g~~p~~~ 503 (613)
.|-.+|++.++ |..|...
T Consensus 560 rygg~klEraRdLFEqaL~-~Cpp~~a 585 (835)
T KOG2047|consen 560 RYGGTKLERARDLFEQALD-GCPPEHA 585 (835)
T ss_pred HhcCCCHHHHHHHHHHHHh-cCCHHHH
Confidence 38888999888 7778764
No 83
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.87 E-value=3.8e-05 Score=78.81 Aligned_cols=373 Identities=14% Similarity=0.045 Sum_probs=199.2
Q ss_pred CchHHHHHHHHHHHhhhHHHHHHHHHHHhCCC---CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 007193 58 DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA-DCKLYTTL 133 (613)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~-~~~~~~~l 133 (613)
.|+..++..+.-+....|++..+.+.|++..+ .....|+.+-..+...|.-..|..+++.-....-.| |...+-..
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 35555555555555667788888888877542 345567777777777777777777776655332123 23333323
Q ss_pred HHHHH-HcCChhHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCC-CCCC
Q 007193 134 ITTCA-KSGKVDAMFEVFHEMVNA--GI--EPNVHTYGALIDGCAKA-----------GQVAKAFGAYGIMRSKN-VKPD 196 (613)
Q Consensus 134 i~~~~-~~g~~~~a~~~~~~m~~~--g~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g-~~p~ 196 (613)
-..|. +.+.++++...-.+.... +. ......|-.+.-+|... ....++++.+++..+.+ -.|+
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 33332 234555555444444331 10 11222333333333221 12455666666665542 2233
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCC---------
Q 007193 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY-NIK--------- 266 (613)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~--------- 266 (613)
..-|-++ -|+..++++.|.+...+..+-+. ..+...|..+.-.+...+++.+|+.+.+..... +..
T Consensus 480 ~if~lal--q~A~~R~l~sAl~~~~eaL~l~~--~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 480 VIFYLAL--QYAEQRQLTSALDYAREALALNR--GDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH 555 (799)
T ss_pred HHHHHHH--HHHHHHhHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence 3333222 34455566666666666554311 234455555555566666666666666544322 100
Q ss_pred ---------CCHHHHHHHHHHHHh------c-----------------CCHHHHHHHHHHH-----------------HH
Q 007193 267 ---------GTPEVYTIAINCCSQ------T-----------------GDWEFACSVYDDM-----------------TK 297 (613)
Q Consensus 267 ---------~~~~~~~~li~~~~~------~-----------------g~~~~a~~~~~~m-----------------~~ 297 (613)
....+...++..+-. . ++..++.+....+ ..
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence 000111111111110 0 0111111111110 00
Q ss_pred CCC--CCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007193 298 KGV--IPDE------VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (613)
Q Consensus 298 ~g~--~p~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 369 (613)
.-+ .|+. ..|......+.+.+..++|...+.+..+.. +.....|......+...|.+++|.+.|......+
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 001 1121 223444556666777777777776666553 4556667666677777888888888887776543
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHH--HHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 370 LKPTVSTMNALITALCDGDQLPKTME--VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 370 ~~~~~~~~~~li~~~~~~g~~~~A~~--l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
+-++.+.+++...+.+.|+..-|.. ++.++.+.+ +-+...|..+...+.+.|+.+.|.+.|.....
T Consensus 715 -P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 715 -PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred -CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 2336677788888888888777777 888887754 34677788888888888888888888876654
No 84
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=7.2e-06 Score=77.71 Aligned_cols=268 Identities=9% Similarity=-0.048 Sum_probs=128.7
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 007193 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK-LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA 167 (613)
Q Consensus 89 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 167 (613)
+.|+.....+.+.+...|+.++|...|+..... .|+.. ....-.-.+.+.|+.+....+-..+.... ..+..-|-.
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 345555566666666666666666666655533 22211 11112222345555555555555544321 122223333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhc
Q 007193 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (613)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~ 247 (613)
-.......++++.|+.+-++.+... +.+...|-.--..+...++.++|.-.|+....- -+-+..+|..|+..|...
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L---ap~rL~~Y~GL~hsYLA~ 381 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQML---APYRLEIYRGLFHSYLAQ 381 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhc---chhhHHHHHHHHHHHHhh
Confidence 3333444555666666655555432 112223322224455556666666666555432 123455666666666666
Q ss_pred CChHHHHHHHHHHHhcCCCCCHHHHHHHH-HHH-HhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 007193 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAI-NCC-SQTGDWEFACSVYDDMTKKGVIPD-EVFLSALIDFAGHAGKVEAAF 324 (613)
Q Consensus 248 g~~~~A~~~~~~~~~~~~~~~~~~~~~li-~~~-~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~ 324 (613)
|++.+|..+-+...+. ++.+..+.+.+. ..+ -...--++|.++++.-.... |+ ....+.+...|...|..+.+.
T Consensus 382 ~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~--P~Y~~AV~~~AEL~~~Eg~~~D~i 458 (564)
T KOG1174|consen 382 KRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN--PIYTPAVNLIAELCQVEGPTKDII 458 (564)
T ss_pred chHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC--CccHHHHHHHHHHHHhhCccchHH
Confidence 6666655544433322 122233333331 111 12222345555555554432 22 223444455555566666666
Q ss_pred HHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007193 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368 (613)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (613)
.+++..... .||...-+.|.+.+.....+.+|.+.|....+.
T Consensus 459 ~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 459 KLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 666655543 355555666666666666666666666655543
No 85
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.81 E-value=0.00011 Score=83.80 Aligned_cols=337 Identities=9% Similarity=-0.039 Sum_probs=208.6
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC------CCC--HHHHHHHHHHHH
Q 007193 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI------EPN--VHTYGALIDGCA 173 (613)
Q Consensus 102 ~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~------~~~--~~~~~~li~~~~ 173 (613)
....|+++.+...++.+.......+..........+...|+++++...+......-- .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 445677777666666542211112222333445556678999999998887654210 111 112222334556
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCC---CHHHHHHHHHHHHh
Q 007193 174 KAGQVAKAFGAYGIMRSKNVKPDR----VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP---DHITIGALMKACAN 246 (613)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~~~ll~~~~~ 246 (613)
..|++++|...+++....-...+. ...+.+...+...|++++|...+.+.........+ ...+...+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 789999999999987653111121 23455566677899999999998887642111111 12344556677888
Q ss_pred cCChHHHHHHHHHHHhc----CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCC--CHHHHHHHHHHHH
Q 007193 247 AGQVDRAREVYKMIHKY----NIKG---TPEVYTIAINCCSQTGDWEFACSVYDDMTKK--GVIP--DEVFLSALIDFAG 315 (613)
Q Consensus 247 ~g~~~~A~~~~~~~~~~----~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p--~~~~~~~li~~~~ 315 (613)
.|+++.|...+++.... +... ....+..+...+...|++++|...+.+.... ...+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 99999999998776442 2111 1233455666677889999999999887542 1112 2234444566777
Q ss_pred hcCCHHHHHHHHHHHHHCC--CCcCHH--h--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHc
Q 007193 316 HAGKVEAAFEILQEAKNQG--ISVGII--S--YSSLMGACSNAKNWQKALELYEHMKSIKLKPT---VSTMNALITALCD 386 (613)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~--~~~~~~--~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~ 386 (613)
..|+.++|...+....... ...... . ....+..+...|+.+.|...+........... ...+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 8999999999988875421 111111 0 01122445568999999999877654221111 1123456677889
Q ss_pred CCChhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 007193 387 GDQLPKTMEVLSDMKSL----GLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 438 (613)
Q Consensus 387 ~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (613)
.|++++|...+++.... |..++ ..+...+..++...|+.++|...+.+..+.
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999987652 33322 235566667889999999999999998864
No 86
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=0.00014 Score=72.44 Aligned_cols=380 Identities=12% Similarity=0.116 Sum_probs=211.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH--hhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChH
Q 007193 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC--KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSE 109 (613)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 109 (613)
.=.||+.++|++|+.+.+.=.... ..+... +-.+| .+.+..++|+..++...+.+..+...-...+.+.++++
T Consensus 53 vValIq~~ky~~ALk~ikk~~~~~--~~~~~~---fEKAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~yd 127 (652)
T KOG2376|consen 53 VVALIQLDKYEDALKLIKKNGALL--VINSFF---FEKAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYD 127 (652)
T ss_pred HhhhhhhhHHHHHHHHHHhcchhh--hcchhh---HHHHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHH
Confidence 335779999999986655332110 111110 22222 24677899999999666666667777778899999999
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH---HHHhcCCHHHHHHHH
Q 007193 110 GAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID---GCAKAGQVAKAFGAY 185 (613)
Q Consensus 110 ~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~---~~~~~g~~~~A~~~~ 185 (613)
+|+.+|+.+.+++.... ...-..++.+-.. -.+ ++.+... ..| ..+|..+.+ .++..|++.+|++++
T Consensus 128 ealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~-~~~q~v~---~v~-e~syel~yN~Ac~~i~~gky~qA~elL 198 (652)
T KOG2376|consen 128 EALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQV-QLLQSVP---EVP-EDSYELLYNTACILIENGKYNQAIELL 198 (652)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhH-HHHHhcc---CCC-cchHHHHHHHHHHHHhcccHHHHHHHH
Confidence 99999999987763211 1111111111110 001 1122111 122 223333332 345567777777777
Q ss_pred HHHHhC-------C------CCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHH----HHHHHHHHHHhc
Q 007193 186 GIMRSK-------N------VKPDRVV-FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI----TIGALMKACANA 247 (613)
Q Consensus 186 ~~m~~~-------g------~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~----~~~~ll~~~~~~ 247 (613)
+..... + +.-+..+ -.-|.-.+-..|+..+|..++....... ++|.. .-|.|+.+-...
T Consensus 199 ~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~---~~D~~~~Av~~NNLva~~~d~ 275 (652)
T KOG2376|consen 199 EKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN---PADEPSLAVAVNNLVALSKDQ 275 (652)
T ss_pred HHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc---CCCchHHHHHhcchhhhcccc
Confidence 766211 1 0001111 1123334556677777777777766542 22221 111111110000
Q ss_pred ---------------------------------------------CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-
Q 007193 248 ---------------------------------------------GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ- 281 (613)
Q Consensus 248 ---------------------------------------------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~- 281 (613)
+..+.+.++-.... +..| ...+.+++....+
T Consensus 276 ~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp--~~~p-~~~~~~ll~~~t~~ 352 (652)
T KOG2376|consen 276 NYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLP--GMSP-ESLFPILLQEATKV 352 (652)
T ss_pred ccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCC--ccCc-hHHHHHHHHHHHHH
Confidence 01111111111100 1112 2334444443332
Q ss_pred -cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCcCHHhHHHHHHHHHhc
Q 007193 282 -TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ--------EAKNQGISVGIISYSSLMGACSNA 352 (613)
Q Consensus 282 -~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~~li~~~~~~ 352 (613)
...+..+.+++....+....-.....-..+......|+++.|.+++. .+.+.+..| .+...++..+.+.
T Consensus 353 ~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~ 430 (652)
T KOG2376|consen 353 REKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKI 430 (652)
T ss_pred HHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhc
Confidence 22466777777777665443234556666777888999999999999 555555444 4556777788888
Q ss_pred CCHHHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHH
Q 007193 353 KNWQKALELYEHMKSI--KLKPT----VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426 (613)
Q Consensus 353 g~~~~A~~~~~~m~~~--~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 426 (613)
++-+.|..++.+.... .-.+. ..+|.-+...-.+.|+-++|..+++++.+.. ++|..+...++.+|++. +++
T Consensus 431 ~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~e 508 (652)
T KOG2376|consen 431 KDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPE 508 (652)
T ss_pred cCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHH
Confidence 8888788887766431 00122 2334444445567899999999999999853 67889999999998876 577
Q ss_pred HHHHHHHHH
Q 007193 427 VGLMLLSQA 435 (613)
Q Consensus 427 ~a~~~~~~m 435 (613)
.|..+-..+
T Consensus 509 ka~~l~k~L 517 (652)
T KOG2376|consen 509 KAESLSKKL 517 (652)
T ss_pred HHHHHhhcC
Confidence 777765544
No 87
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.75 E-value=0.0002 Score=66.63 Aligned_cols=300 Identities=12% Similarity=0.092 Sum_probs=185.6
Q ss_pred CchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHH---HHHcCCChHHHHHHHHHHHHcCCCCCHHH-HHHH
Q 007193 58 DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMS---VCASSKDSEGAFQVLRLVQEAGLKADCKL-YTTL 133 (613)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~~~~~~A~~~~~~m~~~g~~~~~~~-~~~l 133 (613)
|....-|.-++......|++.+|+..|.....-|+..|.++.+ .|...|+...|+.=+..+.+. +||-.. -..-
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 3455556667777777889999999999888888888877764 588889999898888888864 677432 2223
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHH----H------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 007193 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHT----Y------------GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197 (613)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~----~------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 197 (613)
...+.+.|.+++|..=|+.+++.. |+..+ + ...+..+.-.|+...|+.....+++.. +-|.
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda 189 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDA 189 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchh
Confidence 345678999999999999988763 32111 1 122333445677777777777777652 3455
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHH----HH
Q 007193 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV----YT 273 (613)
Q Consensus 198 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~ 273 (613)
..+..-..+|...|++..|..-+....+. -..+..++--+-..+...|+.+.++...++..+.+ |+... |.
T Consensus 190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askL---s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YK 264 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEPKKAIHDLKQASKL---SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYK 264 (504)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhc---cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHH
Confidence 56666667777777777777666555432 12344455555566677777777777777766643 33221 11
Q ss_pred HH---------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHh
Q 007193 274 IA---------INCCSQTGDWEFACSVYDDMTKKGVIPDEVF---LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 341 (613)
Q Consensus 274 ~l---------i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 341 (613)
.+ +......++|-++++-.+...+..+...... +..+-.++...|.+.+|++.-.++.+.. +.|+.+
T Consensus 265 klkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~ 343 (504)
T KOG0624|consen 265 KLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQV 343 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHH
Confidence 11 1122334556666666665555433312222 2233344445566667776666666543 334666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007193 342 YSSLMGACSNAKNWQKALELYEHMKSI 368 (613)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (613)
+.--..+|.-...++.|+.-|+...+.
T Consensus 344 l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 344 LCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 666666666666677777666666654
No 88
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.71 E-value=8.2e-07 Score=84.69 Aligned_cols=82 Identities=26% Similarity=0.272 Sum_probs=36.1
Q ss_pred ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHH
Q 007193 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV-EAAFEIL 327 (613)
Q Consensus 249 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~a~~~~ 327 (613)
.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+....+.. +..++..++......|+. +.+.+.+
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 345555555554433 2344445555555555555555555555554443322 333444444444444444 3344444
Q ss_pred HHHHH
Q 007193 328 QEAKN 332 (613)
Q Consensus 328 ~~~~~ 332 (613)
.++..
T Consensus 260 ~qL~~ 264 (290)
T PF04733_consen 260 SQLKQ 264 (290)
T ss_dssp HHCHH
T ss_pred HHHHH
Confidence 44443
No 89
>PF12854 PPR_1: PPR repeat
Probab=98.69 E-value=2.6e-08 Score=60.36 Aligned_cols=32 Identities=53% Similarity=0.865 Sum_probs=16.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (613)
Q Consensus 157 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (613)
|+.||..|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555544
No 90
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.69 E-value=7.3e-05 Score=75.96 Aligned_cols=192 Identities=15% Similarity=0.172 Sum_probs=96.4
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH
Q 007193 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215 (613)
Q Consensus 136 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 215 (613)
+......+.+|+.+++.+.... .-..-|..+...|+..|+++.|.++|.+. ..++-.|..|.+.|++++
T Consensus 741 aai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHH
Confidence 3344455556666665555431 12223555556666666666666665443 124445556666666666
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295 (613)
Q Consensus 216 a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 295 (613)
|.++-.+.. +.......|-+-..-.-+.|++.+|.+++-.+.. |+ .-|.+|-+.|..++.+++..+-
T Consensus 810 a~kla~e~~----~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 810 AFKLAEECH----GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHhc----CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHHh
Confidence 666555442 2233334444444445555666666555433221 11 1245566666666555555442
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 007193 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363 (613)
Q Consensus 296 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (613)
-... -..|...+..-+...|++..|..-|-+. .-|.+-+++|-..+.+++|.++-+
T Consensus 877 h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea---------~d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 877 HGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEA---------GDFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred Chhh---hhHHHHHHHHHHHhccChhHHHHHHHhh---------hhHHHHHHHhhhhhhHHHHHHHHh
Confidence 2111 1233444455555666666666554332 124455566666666666665543
No 91
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.69 E-value=0.00021 Score=73.47 Aligned_cols=362 Identities=12% Similarity=0.022 Sum_probs=234.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC--C--C-CHHHHHHHHHHHHc-CCC
Q 007193 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--N--P-TLSTFNMLMSVCAS-SKD 107 (613)
Q Consensus 34 ~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~--~-~~~~~~~li~~~~~-~~~ 107 (613)
++.++|+++.+.+.|++....-+ .....++.. .-.+...|.-..|..+.+.-. . | |+..+-..-+.|.+ .+.
T Consensus 332 al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~-als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~ 409 (799)
T KOG4162|consen 332 ALSRCGQFEVLAEQFEQALPFSF-GEHERWYQL-ALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKL 409 (799)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHH-HHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhh
Confidence 34588999999999998765432 223333332 222334455577888877532 2 3 33344333444543 466
Q ss_pred hHHHHHHHHHHHHc--CC--CCCHHHHHHHHHHHHHc-----------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007193 108 SEGAFQVLRLVQEA--GL--KADCKLYTTLITTCAKS-----------GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (613)
Q Consensus 108 ~~~A~~~~~~m~~~--g~--~~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (613)
.++++....+.... +. ......|..+.-+|... ....++.+.+++..+.+ +-|..+.-.+.--|
T Consensus 410 ~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp~~if~lalq~ 488 (799)
T KOG4162|consen 410 VEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDPLVIFYLALQY 488 (799)
T ss_pred hhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 77777777666652 11 12344555555555432 12356788888887765 22333333333457
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC------------------CCCH
Q 007193 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV------------------DPDH 234 (613)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~------------------~~~~ 234 (613)
+..++++.|.+..++..+.+-.-+...|..|.-.+...+++.+|+.+.+....+. |. ....
T Consensus 489 A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~~~~~~~e~~l 567 (799)
T KOG4162|consen 489 AEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIELTFNDREEAL 567 (799)
T ss_pred HHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhhhhcccHHHHH
Confidence 7788999999999998887656788888888888888888888888877665431 11 0112
Q ss_pred HHHHHHHHHHH------hc-----------------CChHHHHHHHHHH--------HhcC---------CCCC------
Q 007193 235 ITIGALMKACA------NA-----------------GQVDRAREVYKMI--------HKYN---------IKGT------ 268 (613)
Q Consensus 235 ~~~~~ll~~~~------~~-----------------g~~~~A~~~~~~~--------~~~~---------~~~~------ 268 (613)
.|+..++..+- .. ++..+|.+....+ ...+ +.|.
T Consensus 568 ~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~ 647 (799)
T KOG4162|consen 568 DTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWY 647 (799)
T ss_pred HHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHH
Confidence 33444433332 00 1122222221111 1111 1111
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHH
Q 007193 269 --PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346 (613)
Q Consensus 269 --~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 346 (613)
...|......+.+.+..++|...+.+...... -....|......+...|..++|.+.|......+ |.++.+..++.
T Consensus 648 ~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~-l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala 725 (799)
T KOG4162|consen 648 LLQKLWLLAADLFLLSGNDDEARSCLLEASKIDP-LSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALA 725 (799)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcch-hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHH
Confidence 22466677788888999999888888766532 255667777777888899999999999888775 56778899999
Q ss_pred HHHHhcCCHHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007193 347 GACSNAKNWQKALE--LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (613)
Q Consensus 347 ~~~~~~g~~~~A~~--~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (613)
.++.+.|+...|.. ++..+.+.+ +.+...|-.+...+-+.|+.++|.+.|.-..+
T Consensus 726 ~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 726 ELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 99999999888887 999998876 46789999999999999999999999988765
No 92
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.66 E-value=1.3e-06 Score=83.32 Aligned_cols=149 Identities=17% Similarity=0.165 Sum_probs=65.9
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cC
Q 007193 243 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH----AG 318 (613)
Q Consensus 243 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g 318 (613)
.+...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+.+ .| .+...+..++.. .+
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCch
Confidence 344455555555554321 223444445555555555555555555555432 12 222223332222 12
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh-hHHHHHH
Q 007193 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL-PKTMEVL 397 (613)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~l~ 397 (613)
.+.+|..+|+++.+. ..+++.+.|.+..++...|++++|.+++.+..+.+ +.+..+...+|......|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 355555555554333 34455555555555555555555555555544332 22334444444444444444 3344444
Q ss_pred HHHHh
Q 007193 398 SDMKS 402 (613)
Q Consensus 398 ~~m~~ 402 (613)
.++..
T Consensus 260 ~qL~~ 264 (290)
T PF04733_consen 260 SQLKQ 264 (290)
T ss_dssp HHCHH
T ss_pred HHHHH
Confidence 44443
No 93
>PF12854 PPR_1: PPR repeat
Probab=98.65 E-value=3.3e-08 Score=59.86 Aligned_cols=32 Identities=28% Similarity=0.597 Sum_probs=17.4
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 007193 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (613)
Q Consensus 369 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 400 (613)
|+.||..|||+||.+|++.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
No 94
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.65 E-value=0.00031 Score=80.22 Aligned_cols=333 Identities=10% Similarity=0.011 Sum_probs=209.6
Q ss_pred hhhHHHHHHHHHHHhCCC----CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCC------CCCH--HHHHHHHHHHHH
Q 007193 72 KSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL------KADC--KLYTTLITTCAK 139 (613)
Q Consensus 72 ~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~------~~~~--~~~~~li~~~~~ 139 (613)
...|+++.+...+..++. .++.........+...|++++|...++.....-- .+.. .....+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 344666777777776641 2233333444556678999999999887754310 1111 122223345567
Q ss_pred cCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHcc
Q 007193 140 SGKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAGQVAKAFGAYGIMRSK----NV-KPDRVVFNALITACGQS 210 (613)
Q Consensus 140 ~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~ 210 (613)
.|++++|...+++....--..+. ...+.+...+...|++++|...+++.... |- .+...++..+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 89999999999987753111121 34456666778899999999999887642 21 11123445566778889
Q ss_pred CCHHHHHHHHHHHhhCC--CCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCC--CHHHHHHHHHHHHh
Q 007193 211 GAVDRAFDVLAEMNAEV--HPVD--P-DHITIGALMKACANAGQVDRAREVYKMIHKYN--IKG--TPEVYTIAINCCSQ 281 (613)
Q Consensus 211 g~~~~a~~~~~~m~~~~--~~~~--~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~~li~~~~~ 281 (613)
|++++|...+++..... .+.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+..
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 99999999887764421 1111 1 22334455566777899999999988765431 111 23345556677888
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC---HHhHHHHHHHHHhc
Q 007193 282 TGDWEFACSVYDDMTKKGVI-PDEVFL-----SALIDFAGHAGKVEAAFEILQEAKNQGISVG---IISYSSLMGACSNA 352 (613)
Q Consensus 282 ~g~~~~a~~~~~~m~~~g~~-p~~~~~-----~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~ 352 (613)
.|++++|.+.+......... .....+ ...+..+...|+.+.|...+........... ......+..++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 99999999999887542110 011111 1122445567899999988776544221111 11134567778899
Q ss_pred CCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 007193 353 KNWQKALELYEHMKSI----KLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLG 404 (613)
Q Consensus 353 g~~~~A~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 404 (613)
|+.++|...+++.... |..++ ..+...+..++.+.|+.++|...+.+..+..
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999987642 32222 3456667778889999999999999988753
No 95
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=0.00018 Score=71.14 Aligned_cols=405 Identities=15% Similarity=0.071 Sum_probs=224.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC--CCC-HHHHHHHHHHHHcCCCh
Q 007193 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPT-LSTFNMLMSVCASSKDS 108 (613)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~~~~ 108 (613)
-|.....|+++.|+.+|-+.+..+ |.+.+.++.-...+.+.|++++|++=-.+.. .|+ +.-|+-...++.-.|++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccH
Confidence 366778999999999999998877 6687777777788888899988887655443 232 45788888888889999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH-----HHHhcCCHHHHHH
Q 007193 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID-----GCAKAGQVAKAFG 183 (613)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~-----~~~~~g~~~~A~~ 183 (613)
++|+..|.+-.+.. +.+...++.+.+++.... .+.+.|. ++..|..+.+ .+...-.+..-+.
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~---~~~~~~~---------~p~~~~~l~~~p~t~~~~~~~~~~~~l~ 153 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDY---AADQLFT---------KPYFHEKLANLPLTNYSLSDPAYVKILE 153 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHH---Hhhhhcc---------CcHHHHHhhcChhhhhhhccHHHHHHHH
Confidence 99999999888764 555667777777761110 1111111 1111111111 1111111111111
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHHHccCCHHHH-HHHH------------HHHhhCCCCCCCC----------HHHHHH
Q 007193 184 AYGIMRSK-NVKPDRVVFNALITACGQSGAVDRA-FDVL------------AEMNAEVHPVDPD----------HITIGA 239 (613)
Q Consensus 184 ~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a-~~~~------------~~m~~~~~~~~~~----------~~~~~~ 239 (613)
.+..-... +...+ ...++.+.......+.- +..- ..+... .+...| ..-...
T Consensus 154 ~~~~~p~~l~~~l~---d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~d~~ee~~~k~~a~~ek~ 229 (539)
T KOG0548|consen 154 IIQKNPTSLKLYLN---DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNG-FPIIEDNTEERRVKEKAHKEKE 229 (539)
T ss_pred HhhcCcHhhhcccc---cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCC-CCccchhHHHHHHHHhhhHHHH
Confidence 11100000 00000 00011111100000000 0000 000000 000001 112445
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-------HHH
Q 007193 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA-------LID 312 (613)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-------li~ 312 (613)
+.++..+..+++.|.+-+....... .+..-++....+|...|.+.++...-....+.|.. ...-|+. +..
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhh
Confidence 6666777778888888888777765 34455677777888888888877777776665543 2222332 333
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHcCCChh
Q 007193 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS-TMNALITALCDGDQLP 391 (613)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~ 391 (613)
+|.+.++++.+...|.+.......|+. ..+....+++....+...-. .|... ---.=...+.+.|++.
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~ 375 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYP 375 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHH
Confidence 556667888888888886655434332 22334445555555444332 23321 1111255677889999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHhhHHHHHHhhhhh
Q 007193 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF---KCIIGMCSRRYEKARTLNEHV 468 (613)
Q Consensus 392 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~---~~li~~~~~~~~~a~~~~~~~ 468 (613)
.|++.+.+++... +-|...|+.-.-+|.+.|.+..|..-.+..++. .|+.... ...+--..++|++|.+-...-
T Consensus 376 ~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 376 EAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988864 446778888888899999999998887777763 4554321 111111123566666554443
Q ss_pred hccc
Q 007193 469 LSFN 472 (613)
Q Consensus 469 ~~~~ 472 (613)
...+
T Consensus 453 le~d 456 (539)
T KOG0548|consen 453 LELD 456 (539)
T ss_pred HhcC
Confidence 3333
No 96
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=0.00019 Score=65.42 Aligned_cols=187 Identities=13% Similarity=0.085 Sum_probs=128.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC--CCCHHHHHH-HHHHHHcCCC
Q 007193 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNM-LMSVCASSKD 107 (613)
Q Consensus 31 ~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~-li~~~~~~~~ 107 (613)
+..+||+..++..|++++..-.++. |.+..-.+.++..+-...++..|-..++++. .|...-|.. -...+.+.+.
T Consensus 16 viy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i 93 (459)
T KOG4340|consen 16 VVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACI 93 (459)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcc
Confidence 4457899999999999999888887 5555556666666677778999999998865 344333332 2355677888
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007193 108 SEGAFQVLRLVQEAGLKADCKLYTTLITT--CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185 (613)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 185 (613)
+..|+.+...|... |+...-..-+.+ ....+++..+..+.++.... -+..+.+...-...+.|+++.|.+-|
T Consensus 94 ~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 94 YADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred cHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHHH
Confidence 99999998887642 222222222222 23567888888888887642 24444455445556889999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 007193 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (613)
Q Consensus 186 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 226 (613)
+...+-+--.....||.-+ +..+.++.+.|++...++...
T Consensus 168 qaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIER 207 (459)
T ss_pred HHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHh
Confidence 9887754344456777555 455678899999988887764
No 97
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.57 E-value=4.5e-05 Score=82.96 Aligned_cols=230 Identities=12% Similarity=0.037 Sum_probs=173.0
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHH
Q 007193 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD---PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270 (613)
Q Consensus 194 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 270 (613)
+-+...|-.-|.-....++.++|.+++++.... ..+. --...|.++++.-...|.-+...++|+++.+.. ..-.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHH
Confidence 334567877888888889999999999888753 1111 113467777877777788888899999888753 2246
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cCHHhHHHHHHHH
Q 007193 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS-VGIISYSSLMGAC 349 (613)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~ 349 (613)
+|..|...|.+.+.+++|.++++.|.+.-- -....|...+..+.+..+-+.|..++.+..+.-.+ -......-.+..-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 788899999999999999999999987632 36678888899999998889999999888765211 2355566667777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhhcCCHHH
Q 007193 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT--ITYSILLVACERKDDVEV 427 (613)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~ 427 (613)
.+.|+.+.++.+|+...... +.-...|+..|+.-.++|..+.+..+|++....++.|-. ..|.-.|.--...|+-+.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 88999999999999887653 345678999999999999999999999999988877743 445555554445555443
Q ss_pred H
Q 007193 428 G 428 (613)
Q Consensus 428 a 428 (613)
+
T Consensus 1690 v 1690 (1710)
T KOG1070|consen 1690 V 1690 (1710)
T ss_pred H
Confidence 3
No 98
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.54 E-value=0.0011 Score=68.80 Aligned_cols=163 Identities=18% Similarity=0.184 Sum_probs=87.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHcCCChHHHHHH
Q 007193 36 IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT-LSTFNMLMSVCASSKDSEGAFQV 114 (613)
Q Consensus 36 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~ 114 (613)
++.|.+++|..++.+..+-+ ++-+++.+.|.+++|+++-+.-..-. ..||..-..-+-..++.+.|++.
T Consensus 811 ieLgMlEeA~~lYr~ckR~D----------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRYD----------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHHH----------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHH
Confidence 47888888988888887755 34445666777888877655322111 12344344444455666666655
Q ss_pred HHHHH----------HcC---------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007193 115 LRLVQ----------EAG---------LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (613)
Q Consensus 115 ~~~m~----------~~g---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 175 (613)
|++.. ... -..|...|.-....+-..|+.+.|+.+|..... |-++++..|-.
T Consensus 881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~q 951 (1416)
T KOG3617|consen 881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQ 951 (1416)
T ss_pred HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeec
Confidence 54331 110 012333333344444455666777666665542 44455555555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 007193 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (613)
Q Consensus 176 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 223 (613)
|+.++|-++-++-- |......|.+.|-..|++.+|..+|.+.
T Consensus 952 Gk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 952 GKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred cCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 55555555544322 3344444555555555555555555443
No 99
>PLN02789 farnesyltranstransferase
Probab=98.53 E-value=0.00015 Score=70.24 Aligned_cols=212 Identities=11% Similarity=0.011 Sum_probs=133.6
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007193 97 MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (613)
Q Consensus 97 ~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 175 (613)
.+-..+...++.++|+.+.+.+++.. +-+..+|+..-.++...| ++++++..++++.+.. +.+..+|+..-..+.+.
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l 119 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHc
Confidence 33344556677888888888887654 334456665555666666 5678888888877664 44556677665555555
Q ss_pred CCH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhc---CCh
Q 007193 176 GQV--AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA---GQV 250 (613)
Q Consensus 176 g~~--~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~---g~~ 250 (613)
|+. ++++.+++++.+.. +-|..+|+....++...|+++++++.++++.+.. +.|..+|+.....+.+. |..
T Consensus 120 ~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d---~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 120 GPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED---VRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred CchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC---CCchhHHHHHHHHHHhccccccc
Confidence 553 56777777777653 4466777777777777788888888888877642 34555666555444443 222
Q ss_pred ----HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007193 251 ----DRAREVYKMIHKYNIKGTPEVYTIAINCCSQT----GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (613)
Q Consensus 251 ----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 316 (613)
+++.....++.... +.+..+|+-+...+... +...+|.+.+.+....++. +...+..|+..|+.
T Consensus 196 ~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred cccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 34555555666554 55667777777777663 3345577777776654433 55666667766664
No 100
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.52 E-value=0.00031 Score=74.24 Aligned_cols=75 Identities=13% Similarity=0.041 Sum_probs=56.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChHHHHHH
Q 007193 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQV 114 (613)
Q Consensus 38 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~ 114 (613)
..+...|...|-+..+.+ +.-...+..++.+|....+...|.+-|++.. ..+...+....+.|++..+++.|..+
T Consensus 471 rK~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHH
Confidence 445777888887777776 4455566778888888778888999988754 45666777888888888888888777
No 101
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.50 E-value=0.00056 Score=63.71 Aligned_cols=359 Identities=12% Similarity=0.070 Sum_probs=241.1
Q ss_pred ccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHH--
Q 007193 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLM-- 99 (613)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li-- 99 (613)
|-++..-...-+.|+-+|++..|+.-|....+-+ |.+......-...|...|...-|+.-|..+..--+..+.+-+
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR 112 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence 4455556666778889999999999999999877 666555444455666667666677666665432222222222
Q ss_pred -HHHHcCCChHHHHHHHHHHHHcCCCCC--HHH------------HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 007193 100 -SVCASSKDSEGAFQVLRLVQEAGLKAD--CKL------------YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHT 164 (613)
Q Consensus 100 -~~~~~~~~~~~A~~~~~~m~~~g~~~~--~~~------------~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 164 (613)
..+.+.|.++.|..=|+.+..+..... ... ....+..+.-.|+...|++....+++.. +.|...
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l 191 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASL 191 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHH
Confidence 458899999999999999987742111 111 1223344556789999999999998875 568888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHH----
Q 007193 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL---- 240 (613)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~l---- 240 (613)
|..-..+|...|++..|+.-++...+.. .-++.++--+-..+...|+.+.++...++..+ +.||...+-..
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK----ldpdHK~Cf~~YKkl 266 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK----LDPDHKLCFPFYKKL 266 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc----cCcchhhHHHHHHHH
Confidence 9999999999999999988777765542 33566666777888899999999998888875 46775432211
Q ss_pred ---------HHHHHhcCChHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007193 241 ---------MKACANAGQVDRAREVYKMIHKYNIKGTP---EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308 (613)
Q Consensus 241 ---------l~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 308 (613)
+......+++.++.+-.+...+.+..... ..+..+-.++...+++.+|++...+.++.... |+.++.
T Consensus 267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~-dv~~l~ 345 (504)
T KOG0624|consen 267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD-DVQVLC 345 (504)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch-HHHHHH
Confidence 12233456677777777776665422122 23556677888889999999999999876432 477777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 007193 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388 (613)
Q Consensus 309 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 388 (613)
--..+|.-...++.|+.-|+...+.+ +.+... +.| .+.|.++..+.. +.|. |- |-+--++-
T Consensus 346 dRAeA~l~dE~YD~AI~dye~A~e~n-~sn~~~---------reG-le~Akrlkkqs~----kRDY--YK--ILGVkRnA 406 (504)
T KOG0624|consen 346 DRAEAYLGDEMYDDAIHDYEKALELN-ESNTRA---------REG-LERAKRLKKQSG----KRDY--YK--ILGVKRNA 406 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcC-cccHHH---------HHH-HHHHHHHHHHhc----cchH--HH--Hhhhcccc
Confidence 77888888889999999999888775 222221 111 345555544433 2332 22 22334455
Q ss_pred ChhHHHHHHHHHHhCCCCCCH
Q 007193 389 QLPKTMEVLSDMKSLGLCPNT 409 (613)
Q Consensus 389 ~~~~A~~l~~~m~~~g~~p~~ 409 (613)
.-.+..+.+++|... ..||.
T Consensus 407 sKqEI~KAYRKlAqk-WHPDN 426 (504)
T KOG0624|consen 407 SKQEITKAYRKLAQK-WHPDN 426 (504)
T ss_pred cHHHHHHHHHHHHHh-cCCcc
Confidence 566777778887664 56764
No 102
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.49 E-value=1.3e-05 Score=81.51 Aligned_cols=216 Identities=14% Similarity=0.068 Sum_probs=148.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007193 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (613)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 208 (613)
.-..+...+.+.|-...|..+|+++. .|.-.|-+|+..|+..+|..+..+..++ +||...|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 33456667777777788887777654 3666777777788878887777777764 677777777777776
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007193 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (613)
Q Consensus 209 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 288 (613)
...-+++|.++++....+ .-..+.....+.++++++.+.|+.-.+.+ +....+|.....+..+.++++.|
T Consensus 469 d~s~yEkawElsn~~sar---------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR---------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ChHHHHHHHHHhhhhhHH---------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHH
Confidence 666677777777664321 11111112233677777877777666654 44556777777777778888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007193 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (613)
Q Consensus 289 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (613)
.+.|.......+. +...|+.+-.+|.+.++-.+|...+.+..+.+ .-+..+|-..+....+.|.+++|.+.+.++..
T Consensus 539 v~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 539 VKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 8888777765332 45678888888888888888888888777776 44556666666667777888888777777654
No 103
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.48 E-value=9.5e-05 Score=80.59 Aligned_cols=231 Identities=11% Similarity=0.152 Sum_probs=164.5
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHc-CCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 007193 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEA-GLK---ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG 166 (613)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 166 (613)
+...|-..+.-..+.++.+.|+.++++.... ++. .-...|.++++.--.-|.-+...++|++..+.. -.-..|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 4567777777788888888888888877653 111 123467777777777777778888888887652 2244577
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHh
Q 007193 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246 (613)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~ 246 (613)
.|...|.+.+.+++|-++|+.|.++ +.-....|...+..+.+..+-+.|..++.+....- +-..-.....-.+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhhHHHHHHHHHHHhh
Confidence 8888888888888888888888765 23456788888888888888888888888877631 101123344455566678
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHH
Q 007193 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE--VFLSALIDFAGHAGKVEAAF 324 (613)
Q Consensus 247 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~a~ 324 (613)
.|+.+.++.+|+...... +--...|+..|+.-.++|+.+.+..+|++....++.|-. +.|...+..=-..|+-+.+.
T Consensus 1613 ~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred cCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 888888888888877654 444578888899888899999999999998888776643 45666666555556654444
Q ss_pred HH
Q 007193 325 EI 326 (613)
Q Consensus 325 ~~ 326 (613)
.+
T Consensus 1692 ~V 1693 (1710)
T KOG1070|consen 1692 YV 1693 (1710)
T ss_pred HH
Confidence 33
No 104
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.45 E-value=1.7e-05 Score=78.76 Aligned_cols=218 Identities=13% Similarity=0.062 Sum_probs=142.5
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 007193 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286 (613)
Q Consensus 207 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 286 (613)
+.+.|++.+|.-.|+....+. +.+...|..|.......++-..|+..+.+..+.+ +.+..+.-+|.-.|...|.-.
T Consensus 295 lm~nG~L~~A~LafEAAVkqd---P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD---PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC---hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 456777777777777776542 3446677777777777777777888887777776 556677777777788888777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH-----------HHHHhcCCHHHHHHHHHHHH-HCCCCcCHHhHHHHHHHHHhcCC
Q 007193 287 FACSVYDDMTKKGVIPDEVFLSALI-----------DFAGHAGKVEAAFEILQEAK-NQGISVGIISYSSLMGACSNAKN 354 (613)
Q Consensus 287 ~a~~~~~~m~~~g~~p~~~~~~~li-----------~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~ 354 (613)
.|++.++.-....++ |..+. ..+.....+....++|-++. ..+..+|+.+...|.-.|--.|+
T Consensus 371 ~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 788777766543211 00000 01111112233344444443 33434677777777777888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHH
Q 007193 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSILLVACERKDDVEVGLMLLS 433 (613)
Q Consensus 355 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~ 433 (613)
+++|.+.|+...... +-|...||-|...++...+.++|+..|++.++ ++|+- .....|.-+|...|.+++|...|=
T Consensus 446 fdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 888888888877643 33567788888888888888888888888777 56754 334445567788888888877665
Q ss_pred HHH
Q 007193 434 QAK 436 (613)
Q Consensus 434 ~m~ 436 (613)
.++
T Consensus 523 ~AL 525 (579)
T KOG1125|consen 523 EAL 525 (579)
T ss_pred HHH
Confidence 443
No 105
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.45 E-value=1.6e-05 Score=80.92 Aligned_cols=210 Identities=12% Similarity=0.047 Sum_probs=86.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhc
Q 007193 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (613)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~ 247 (613)
+...+...|-...|..+|++.. .|.-+|.+|...|+..+|..+..+..++ +||...|..+.+.....
T Consensus 404 laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek----~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK----DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC----CCcchhHHHhhhhccCh
Confidence 3334444444444444444432 3334444444444444444444443332 34444444444444444
Q ss_pred CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007193 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327 (613)
Q Consensus 248 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 327 (613)
.-+++|.++++....+ .-..+.......++++++.+.|+.-.+...- -..+|-..-.+..+.+++..|.+.|
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHHHH
Confidence 4444444444433221 0011111112234444444444443332211 2233444444444444444444444
Q ss_pred HHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 007193 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (613)
Q Consensus 328 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 400 (613)
..-..-. +.+...||.+-.+|.+.|+-.+|...+.+..+.+ ..+...|...+....+-|.+++|++.+.++
T Consensus 543 ~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 543 HRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 4443322 2233444444444444444444444444444433 222333333334444444444444444443
No 106
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.44 E-value=0.00052 Score=70.04 Aligned_cols=286 Identities=15% Similarity=0.144 Sum_probs=168.4
Q ss_pred hhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 007193 73 SQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152 (613)
Q Consensus 73 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 152 (613)
+.|+++.|+..|-+.. ..-..+.+......+.+|+.+++.+.... .-.--|..+.+.|+..|+++.|.++|.+
T Consensus 718 ~~~q~daainhfiea~-----~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e 790 (1636)
T KOG3616|consen 718 QIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTE 790 (1636)
T ss_pred HHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHh
Confidence 3455555555543321 11223345566778899999998888653 2234577888999999999999999976
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCC
Q 007193 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 232 (613)
Q Consensus 153 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 232 (613)
.- .++--|.+|.+.|+|+.|.++-++.. |.......|.+-..-+-+.|++.+|.+++-.+. .|
T Consensus 791 ~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~------~p 853 (1636)
T KOG3616|consen 791 AD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG------EP 853 (1636)
T ss_pred cc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc------Cc
Confidence 43 35677899999999999999877765 334455566666666778899999988886543 34
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007193 233 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312 (613)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 312 (613)
+ ..|.+|-+.|..++..++.++-....+ ..+...+..-|-..|+...|...|-+..+ |.+.++
T Consensus 854 ~-----~aiqmydk~~~~ddmirlv~k~h~d~l---~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavn 916 (1636)
T KOG3616|consen 854 D-----KAIQMYDKHGLDDDMIRLVEKHHGDHL---HDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVN 916 (1636)
T ss_pred h-----HHHHHHHhhCcchHHHHHHHHhChhhh---hHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHH
Confidence 4 246678888888888777665432211 23455555666666777777666654332 334444
Q ss_pred HHHhcCCHHHHHHHHHH------------HHHCCCCcCH--H------hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 007193 313 FAGHAGKVEAAFEILQE------------AKNQGISVGI--I------SYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372 (613)
Q Consensus 313 ~~~~~g~~~~a~~~~~~------------~~~~~~~~~~--~------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 372 (613)
.|-..+.+++|..+-+. |....+--+. . ....-++.-+..+.++-|.++-+-..+.. .|
T Consensus 917 myk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k-~~ 995 (1636)
T KOG3616|consen 917 MYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK-MG 995 (1636)
T ss_pred HhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc-Cc
Confidence 44444555544443221 0000000000 0 11122333344444555555444333221 22
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007193 373 TVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (613)
Q Consensus 373 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (613)
.+ ...+...+-..|++++|-+.+-+..+
T Consensus 996 ~v--hlk~a~~ledegk~edaskhyveaik 1023 (1636)
T KOG3616|consen 996 EV--HLKLAMFLEDEGKFEDASKHYVEAIK 1023 (1636)
T ss_pred cc--hhHHhhhhhhccchhhhhHhhHHHhh
Confidence 22 22344455678888888877776655
No 107
>PLN02789 farnesyltranstransferase
Probab=98.43 E-value=0.00051 Score=66.59 Aligned_cols=209 Identities=7% Similarity=0.000 Sum_probs=135.2
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC-
Q 007193 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG-QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA- 212 (613)
Q Consensus 135 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~- 212 (613)
..+...++.++|+.+.+++++.. +-+..+|+..-..+...| .+++++..++++.+.. +.+..+|+..-..+.+.|.
T Consensus 45 a~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCch
Confidence 33445677888999988888763 334556776666666667 5789999998888764 3445567655444555554
Q ss_pred -HHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---CCH---
Q 007193 213 -VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT---GDW--- 285 (613)
Q Consensus 213 -~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~--- 285 (613)
.+++..+++.+.... +.|..+|+...-++.+.|+++++++.++++.+.+ +.+..+|+.....+.+. |..
T Consensus 123 ~~~~el~~~~kal~~d---pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 123 AANKELEFTRKILSLD---AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred hhHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhcccccccccc
Confidence 256777887777542 4567788888888888888999999998888877 44556777665555443 222
Q ss_pred -HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHh
Q 007193 286 -EFACSVYDDMTKKGVIPDEVFLSALIDFAGHA----GKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (613)
Q Consensus 286 -~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 351 (613)
++.++...++....+. |...|+-+...+... +...+|...+.+..+.+ +.+......|++.|+.
T Consensus 199 ~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 199 RDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 3556666566655443 556666666666552 33455666666655543 3455566666666664
No 108
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=0.0025 Score=67.72 Aligned_cols=204 Identities=16% Similarity=0.163 Sum_probs=109.0
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 007193 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFD 218 (613)
Q Consensus 139 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 218 (613)
..+-+++|..+|++. ..+....+.||. .-+..+.|.+.-++.- ....|+.+..+-.+.|.+.+|.+
T Consensus 1060 ~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAie 1125 (1666)
T KOG0985|consen 1060 ENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIE 1125 (1666)
T ss_pred hhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHH
Confidence 334445555555443 223434444443 2234444544443332 23456667777667777776666
Q ss_pred HHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 219 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 219 ~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (613)
-|-+. .|...|..+++...+.|.+++-.+.+....+..-.| .+-+.||-+|++.++..+..+++
T Consensus 1126 Syika--------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~--~id~eLi~AyAkt~rl~elE~fi------ 1189 (1666)
T KOG0985|consen 1126 SYIKA--------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP--YIDSELIFAYAKTNRLTELEEFI------ 1189 (1666)
T ss_pred HHHhc--------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc--cchHHHHHHHHHhchHHHHHHHh------
Confidence 65432 244466667777777777777777666655554333 23456666777776665543332
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007193 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378 (613)
Q Consensus 299 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 378 (613)
..||......+.+-|...|.++.|.-+|.. +..|..|...+...|++..|..--++. .+..||-
T Consensus 1190 -~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK 1253 (1666)
T KOG0985|consen 1190 -AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWK 1253 (1666)
T ss_pred -cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHH
Confidence 125555566666666666666666665543 334555555555666665555543332 2344555
Q ss_pred HHHHHHHcCC
Q 007193 379 ALITALCDGD 388 (613)
Q Consensus 379 ~li~~~~~~g 388 (613)
.+-.+|...+
T Consensus 1254 ~VcfaCvd~~ 1263 (1666)
T KOG0985|consen 1254 EVCFACVDKE 1263 (1666)
T ss_pred HHHHHHhchh
Confidence 4444444443
No 109
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.41 E-value=6.3e-05 Score=74.83 Aligned_cols=252 Identities=14% Similarity=0.108 Sum_probs=139.2
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 007193 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216 (613)
Q Consensus 137 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 216 (613)
+.+.|++.+|.-.|+..++.. +-+...|.-|......+++-..|+..+++..+.. +-|....-.|.-.|...|.-.+|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 345666666666666665553 3456666666666666666666666666666542 22344555555666666666666
Q ss_pred HHHHHHHhhCCCCC----C--CCHHHHHHHHHHHHhcCChHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007193 217 FDVLAEMNAEVHPV----D--PDHITIGALMKACANAGQVDRAREVYKMI-HKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (613)
Q Consensus 217 ~~~~~~m~~~~~~~----~--~~~~~~~~ll~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 289 (613)
++.++.-....+.. . ++...-.. ........+....++|-.+ ...+..+|+.+...|.-.|.-.|.+++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 66665553321000 0 00000000 1112222233334444333 33333456667777777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHh-
Q 007193 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG-IISYSSLMGACSNAKNWQKALELYEHMKS- 367 (613)
Q Consensus 290 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~- 367 (613)
..|+..+...+. |...||.|...++...+..+|+..|.+.++.. |+ +.+...|.-.|...|.+++|.+.|-....
T Consensus 451 Dcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 451 DCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQ--PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 777777665443 56677777777777777777777777776653 32 23444455567777777777766654432
Q ss_pred --C------CCCCCHHHHHHHHHHHHcCCChhHHHH
Q 007193 368 --I------KLKPTVSTMNALITALCDGDQLPKTME 395 (613)
Q Consensus 368 --~------~~~~~~~~~~~li~~~~~~g~~~~A~~ 395 (613)
. ...++...|.+|=.++.-.++.+-+.+
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 1 112234566666666666666654433
No 110
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.0056 Score=65.20 Aligned_cols=235 Identities=14% Similarity=0.185 Sum_probs=112.0
Q ss_pred cchhhhHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 007193 23 HDVSEQLHSYNRLIRQGRISECIDLLEDMERKG-LLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSV 101 (613)
Q Consensus 23 ~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~ 101 (613)
.++++-..+..+++..+-..+-+++++++.-.+ .++.+.-+..+++-...+.. -....++.+++..-|.. .+...
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad-~trVm~YI~rLdnyDa~---~ia~i 1057 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKAD-RTRVMEYINRLDNYDAP---DIAEI 1057 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcC-hHHHHHHHHHhccCCch---hHHHH
Confidence 345556667777888888888888888876543 33344444433332222111 11122222222211110 11223
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007193 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181 (613)
Q Consensus 102 ~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 181 (613)
+..++-+++|+.+|+... .+....+.||. ..++++.|.+.-++.. ....|+.+..+-.+.|.+.+|
T Consensus 1058 ai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dA 1123 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDA 1123 (1666)
T ss_pred HhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHH
Confidence 344455566666665442 22333444443 2344455555444432 233466666666666666665
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007193 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261 (613)
Q Consensus 182 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 261 (613)
.+-|-+.. |+..|..+++...+.|.+++-.+.+.-.+++ .-+|. .-+.|+-+|++.+++.+.++++.
T Consensus 1124 ieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk--~~E~~--id~eLi~AyAkt~rl~elE~fi~--- 1190 (1666)
T KOG0985|consen 1124 IESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKK--VREPY--IDSELIFAYAKTNRLTELEEFIA--- 1190 (1666)
T ss_pred HHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--hcCcc--chHHHHHHHHHhchHHHHHHHhc---
Confidence 55443322 4455556666666666666655555444332 11222 22345555666655554444321
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007193 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292 (613)
Q Consensus 262 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 292 (613)
-|+..-...+.+-|...+.++.|.-+|
T Consensus 1191 ----gpN~A~i~~vGdrcf~~~~y~aAkl~y 1217 (1666)
T KOG0985|consen 1191 ----GPNVANIQQVGDRCFEEKMYEAAKLLY 1217 (1666)
T ss_pred ----CCCchhHHHHhHHHhhhhhhHHHHHHH
Confidence 233333444444444555554444443
No 111
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.38 E-value=0.0033 Score=62.43 Aligned_cols=394 Identities=12% Similarity=0.119 Sum_probs=222.9
Q ss_pred HHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC
Q 007193 50 DMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126 (613)
Q Consensus 50 ~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~ 126 (613)
+-.+.+ |.+...+..+++-+..+ ..+++...++++. +-.+..|..-|+.-...++++....+|.+....- .+
T Consensus 11 ~rie~n--P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--Ln 85 (656)
T KOG1914|consen 11 ERIEEN--PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LN 85 (656)
T ss_pred HHHhcC--CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hh
Confidence 334445 67777777777777666 7899999999875 3456789999999999999999999999888653 44
Q ss_pred HHHHHHHHHHHHHc-CChhH----HHHHHHH-HHHCCCCC-CHHHHHHHHHH---------HHhcCCHHHHHHHHHHHHh
Q 007193 127 CKLYTTLITTCAKS-GKVDA----MFEVFHE-MVNAGIEP-NVHTYGALIDG---------CAKAGQVAKAFGAYGIMRS 190 (613)
Q Consensus 127 ~~~~~~li~~~~~~-g~~~~----a~~~~~~-m~~~g~~~-~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~ 190 (613)
...|..-|+--.+. ++... ..+.|+- +.+.|+.+ +-..|+.-+.. |..+.+++...++|+++..
T Consensus 86 lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 86 LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 66676666544332 33332 2233333 23445433 23346655543 3445577788888888876
Q ss_pred CCCCCCHHHHH------HHHHHH-------HccCCHHHHHHHHHHHhhCCCCCCCCHHH---------------HHHHHH
Q 007193 191 KNVKPDRVVFN------ALITAC-------GQSGAVDRAFDVLAEMNAEVHPVDPDHIT---------------IGALMK 242 (613)
Q Consensus 191 ~g~~p~~~~~~------~li~~~-------~~~g~~~~a~~~~~~m~~~~~~~~~~~~~---------------~~~ll~ 242 (613)
.-+.-=...|+ .=|+-. -+...+..|.+++++...-..|+..+..+ |..+|.
T Consensus 166 tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~ 245 (656)
T KOG1914|consen 166 TPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIK 245 (656)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHH
Confidence 42211111222 111111 12234556666666654322232221111 333333
Q ss_pred HHHhcCChH---------HHHHHHHH-HHhcCCCCCHHHHHHHHH-------HHHhcCC-------HHHHHHHHHHHHHC
Q 007193 243 ACANAGQVD---------RAREVYKM-IHKYNIKGTPEVYTIAIN-------CCSQTGD-------WEFACSVYDDMTKK 298 (613)
Q Consensus 243 ~~~~~g~~~---------~A~~~~~~-~~~~~~~~~~~~~~~li~-------~~~~~g~-------~~~a~~~~~~m~~~ 298 (613)
. -+.+-+. ...-++++ +.-.+..| .+|.---. .+...|+ -+++..+++.....
T Consensus 246 w-EksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~p--eiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~ 322 (656)
T KOG1914|consen 246 W-EKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHP--EIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEG 322 (656)
T ss_pred H-HhcCCcccccccHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 1 1111111 11111221 12222222 22221111 1222222 34555555554432
Q ss_pred CCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CH
Q 007193 299 GVIPDEVFLSALIDFAGHA---GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-TV 374 (613)
Q Consensus 299 g~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~ 374 (613)
-..-+..+|..+...--.. ...+....++..+...-...-..+|..+++.-.+..-++.|+.+|.+..+.+..+ ++
T Consensus 323 l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhV 402 (656)
T KOG1914|consen 323 LLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHV 402 (656)
T ss_pred HHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchh
Confidence 2222333333333211111 1245555666666554323334577888888888888999999999999877766 77
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHH
Q 007193 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN--LVMFKCIIG 452 (613)
Q Consensus 375 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~ 452 (613)
..+++++.-|| .++..-|.++|+.=.+. ..-+..-....++-+.+.++-..++.+|++....++.|| ..+|..+|+
T Consensus 403 fVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~ 480 (656)
T KOG1914|consen 403 FVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLE 480 (656)
T ss_pred hHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHH
Confidence 88888888877 46778899999874442 223334445667777888998999999999998766665 356777775
Q ss_pred H
Q 007193 453 M 453 (613)
Q Consensus 453 ~ 453 (613)
-
T Consensus 481 y 481 (656)
T KOG1914|consen 481 Y 481 (656)
T ss_pred H
Confidence 3
No 112
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.38 E-value=5.6e-05 Score=70.89 Aligned_cols=186 Identities=11% Similarity=0.000 Sum_probs=126.6
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-H--
Q 007193 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC---KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN-V-- 162 (613)
Q Consensus 89 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~-- 162 (613)
......+..+...+.+.|+++.|...|+.+.... +.+. .++..+...+.+.|++++|...++++.+.. |+ .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~ 106 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDA 106 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCch
Confidence 3456677777888889999999999999887753 2222 466778888889999999999999988753 32 2
Q ss_pred -HHHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCC
Q 007193 163 -HTYGALIDGCAKA--------GQVAKAFGAYGIMRSKNVKPDR-VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 232 (613)
Q Consensus 163 -~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 232 (613)
.++..+...+.+. |+.+.|.+.|+.+... .|+. ..+..+..... . .....
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~------~~~~~-------- 166 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----L------RNRLA-------- 166 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----H------HHHHH--------
Confidence 1344455555544 6788888888888765 3443 22222211100 0 00000
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007193 233 DHITIGALMKACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (613)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 299 (613)
.....+...|.+.|++++|...++...+... +.....+..+...+.+.|++++|...++.+....
T Consensus 167 --~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 167 --GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred --HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 0112455678899999999999998877531 2345788899999999999999999988887653
No 113
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.37 E-value=0.00053 Score=70.93 Aligned_cols=231 Identities=14% Similarity=0.195 Sum_probs=143.9
Q ss_pred HHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc-C--------CCCCHHHHHHHHHHHHHc
Q 007193 70 VCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA-G--------LKADCKLYTTLITTCAKS 140 (613)
Q Consensus 70 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g--------~~~~~~~~~~li~~~~~~ 140 (613)
++..-|+.+.|++-.+.+. +...|..|.+.|.+..+++-|.-.+..|... | -.|+ .+-....-.....
T Consensus 737 fyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieL 813 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIEL 813 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHH
Confidence 3556688888887776664 4567999999999988888887777666421 1 1122 2222333344578
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 007193 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVL 220 (613)
Q Consensus 141 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 220 (613)
|.+++|..+|.+-++ |..|=..|-..|++++|+++-+.=-...+ ..||..-..-+-..++.+.|++.|
T Consensus 814 gMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred hhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHH
Confidence 889999999988775 34455667778999999887654322211 234544555555567777777777
Q ss_pred HHHh----------hCCC-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 007193 221 AEMN----------AEVH-------PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283 (613)
Q Consensus 221 ~~m~----------~~~~-------~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 283 (613)
++.. .+.. .-..|...|.-....+-..|+++.|+.+|....+ |.+++...|-.|
T Consensus 882 EK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qG 952 (1416)
T KOG3617|consen 882 EKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQG 952 (1416)
T ss_pred HhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeecc
Confidence 6531 1100 0012333444444555566777777777766543 455666666777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (613)
Q Consensus 284 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 330 (613)
+.++|-++-++- | |......+.+.|...|++.+|...|.+.
T Consensus 953 k~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 953 KTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred CchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 777776665542 2 4555666777777777777777777654
No 114
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.35 E-value=0.0039 Score=61.90 Aligned_cols=406 Identities=11% Similarity=0.135 Sum_probs=243.7
Q ss_pred hhhHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC--CCCHHHHHHHHH
Q 007193 26 SEQLHSYNRLI---RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMS 100 (613)
Q Consensus 26 ~~~~~~~~~l~---~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~ 100 (613)
+-++.+|+.|+ +...+++++..++++...- |....++...+..-...++++...++|.+-. .-+...|..-|+
T Consensus 17 P~di~sw~~lire~qt~~~~~~R~~YEq~~~~F--P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQPIDKVRETYEQLVNVF--PSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred CccHHHHHHHHHHHccCCHHHHHHHHHHHhccC--CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 34567888888 4569999999999998654 6666666666666667788999999998743 456778887776
Q ss_pred HHHc-CCChHH----HHHHHHHHH-HcCCCCC-HHHHHHHHHHH---------HHcCChhHHHHHHHHHHHCCCCCCHHH
Q 007193 101 VCAS-SKDSEG----AFQVLRLVQ-EAGLKAD-CKLYTTLITTC---------AKSGKVDAMFEVFHEMVNAGIEPNVHT 164 (613)
Q Consensus 101 ~~~~-~~~~~~----A~~~~~~m~-~~g~~~~-~~~~~~li~~~---------~~~g~~~~a~~~~~~m~~~g~~~~~~~ 164 (613)
--.+ .++... -.+.|+... +.|+.+- -..|+.-+..+ ....+++..+++|.++...-+.-=...
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 5433 233332 334444433 3454332 23455555433 344567778888888875422111122
Q ss_pred HHH------HHHHH-------HhcCCHHHHHHHHHHHHh--CCCCCCHHH---------------HHHHHHHHHccC---
Q 007193 165 YGA------LIDGC-------AKAGQVAKAFGAYGIMRS--KNVKPDRVV---------------FNALITACGQSG--- 211 (613)
Q Consensus 165 ~~~------li~~~-------~~~g~~~~A~~~~~~m~~--~g~~p~~~~---------------~~~li~~~~~~g--- 211 (613)
|+- =|+.. -+...+..|.++++++.. .|+..+..+ |-.+|.-=..++
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccc
Confidence 221 11111 123456677888777753 343322222 433443221111
Q ss_pred ---CH--HHHHHHHHHHhhCCCCCCCCHHH-HH----HHHHHHHhcCCh-------HHHHHHHHHHHhcCCCCCHHHHHH
Q 007193 212 ---AV--DRAFDVLAEMNAEVHPVDPDHIT-IG----ALMKACANAGQV-------DRAREVYKMIHKYNIKGTPEVYTI 274 (613)
Q Consensus 212 ---~~--~~a~~~~~~m~~~~~~~~~~~~~-~~----~ll~~~~~~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~ 274 (613)
.. ....-.+++...- .+..|+..- +. ..-+.+...|+. +++..+++.....-...+..+|..
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~-l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLY-LGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred ccccHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 1111222222221 133444221 11 112334445554 344445544433322222333433
Q ss_pred HHHHHH---hcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-CHHhHHHHHHHH
Q 007193 275 AINCCS---QTGDWEFACSVYDDMTKK-GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV-GIISYSSLMGAC 349 (613)
Q Consensus 275 li~~~~---~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~ 349 (613)
+.+.-- +....+.....++++... ...| ..+|...+..-.+..-++.|..+|.+..+.+..+ ++.++++++.-|
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 332211 112355666667666653 2333 3567778888888888999999999999987776 788999999977
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhhcCCHHH
Q 007193 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT--ITYSILLVACERKDDVEV 427 (613)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~ 427 (613)
| .++..-|.++|+-=... ..-+..--...++-+...++-..|..+|++....++.|+. ..|..+|.--+.-|++..
T Consensus 413 c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 413 C-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred h-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 7 56778999999854432 1233444567788888899999999999999988777754 789999999999999999
Q ss_pred HHHHHHHHHH
Q 007193 428 GLMLLSQAKE 437 (613)
Q Consensus 428 a~~~~~~m~~ 437 (613)
+.++-+++..
T Consensus 491 i~~lekR~~~ 500 (656)
T KOG1914|consen 491 ILKLEKRRFT 500 (656)
T ss_pred HHHHHHHHHH
Confidence 9998887764
No 115
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.35 E-value=0.00011 Score=66.10 Aligned_cols=153 Identities=14% Similarity=0.117 Sum_probs=72.6
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 007193 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179 (613)
Q Consensus 100 ~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 179 (613)
..+...|+-+....+....... .+.|.......+....+.|++.+|...|.+..... ++|..+|+.+.-+|.+.|+++
T Consensus 74 ~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~ 151 (257)
T COG5010 74 TALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFD 151 (257)
T ss_pred HHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChh
Confidence 3344444444444444332211 12333344445555555555555555555554433 445555555555555555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 007193 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258 (613)
Q Consensus 180 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 258 (613)
.|..-|.+..+.- .-+....|.|.-.+.-.|+.+.|..++...... -..|..+-..+.......|+++.|+++-.
T Consensus 152 ~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~---~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 152 EARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS---PAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC---CCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 5555555554431 122334444444455555555555555554432 12244444445555555555555555543
No 116
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=0.00054 Score=62.54 Aligned_cols=318 Identities=12% Similarity=0.064 Sum_probs=156.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHH
Q 007193 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA-LIDGCA 173 (613)
Q Consensus 95 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~-li~~~~ 173 (613)
+.+.+..+.+..+++.|++++....++. +.+....+.|..+|....++..|-.-++++... .|...-|.. -...+-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 3344444455556666666666555543 334555555666666666666666666666543 333333321 123334
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChH
Q 007193 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA--CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251 (613)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 251 (613)
+.+.+..|+++...|... |+...-..-+.+ ....+++..+..+.++...+ .+..+.+.......+.|+++
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e-----n~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE-----NEADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC-----CccchhccchheeeccccHH
Confidence 556666666666666432 222211111111 22345555555555554321 22233333333445566666
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHH
Q 007193 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA-GHAGKVEAAFEILQEA 330 (613)
Q Consensus 252 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~-~~~g~~~~a~~~~~~~ 330 (613)
.|.+-|+...+.+--.....||.-+. ..+.|+++.|++...++.++|++-.+ -++.=+..= .....+..-..++..
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HP-ElgIGm~tegiDvrsvgNt~~lh~S- 238 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHP-ELGIGMTTEGIDVRSVGNTLVLHQS- 238 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCC-ccCccceeccCchhcccchHHHHHH-
Confidence 66666665554432222344544333 33455666666666666666554111 011000000 000000000000000
Q ss_pred HHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH
Q 007193 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI-KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409 (613)
Q Consensus 331 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 409 (613)
+ -+..+|.-...+.+.|+.+.|.+-+-.|.-. .-..|++|...+.-.- -.+++.+..+-+.-+.... +--.
T Consensus 239 ---a---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ 310 (459)
T KOG4340|consen 239 ---A---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPP 310 (459)
T ss_pred ---H---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCCh
Confidence 0 0122333344566788999998888877532 1234666665443222 2345555555555555432 2356
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHH
Q 007193 410 ITYSILLVACERKDDVEVGLMLLSQ 434 (613)
Q Consensus 410 ~t~~~ll~a~~~~g~~~~a~~~~~~ 434 (613)
.||..++-.||+..-++.|..++.+
T Consensus 311 ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 311 ETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 8999999999999998888887754
No 117
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.34 E-value=0.00013 Score=68.45 Aligned_cols=56 Identities=13% Similarity=-0.016 Sum_probs=29.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCC--CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007193 312 DFAGHAGKVEAAFEILQEAKNQGI--SVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (613)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (613)
..+.+.|++.+|...+....+... +.....+..+...+.+.|++++|...++.+..
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345555555555555555554421 11234555555556666666666655555543
No 118
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=0.00092 Score=60.31 Aligned_cols=173 Identities=12% Similarity=0.120 Sum_probs=95.8
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007193 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (613)
Q Consensus 113 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 192 (613)
++.+++.......+......-...|.+.|++++|++...... +......=+..+.+..+++.|.+.+++|.+..
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id 167 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID 167 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 344444444334443444444455667777777776665522 23333333344556666777777777776532
Q ss_pred CCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 007193 193 VKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268 (613)
Q Consensus 193 ~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~ 268 (613)
+..|.+-|..++.+ .+.+.+|.-+|++|..+ .+|+..+.+-...++...|++++|..+++....+. ..+
T Consensus 168 ---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k---~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~d 240 (299)
T KOG3081|consen 168 ---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK---TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKD 240 (299)
T ss_pred ---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc---cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCC
Confidence 44555555555543 24466777777777642 45666666666666677777777777777766665 334
Q ss_pred HHHHHHHHHHHHhcCCHH-HHHHHHHHHHHC
Q 007193 269 PEVYTIAINCCSQTGDWE-FACSVYDDMTKK 298 (613)
Q Consensus 269 ~~~~~~li~~~~~~g~~~-~a~~~~~~m~~~ 298 (613)
+.+...+|..-...|... -..+.+.++...
T Consensus 241 petL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 241 PETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 455544444444444443 333444444443
No 119
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.29 E-value=0.0002 Score=64.54 Aligned_cols=115 Identities=17% Similarity=0.193 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HcCCC--hhHHHH
Q 007193 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL-CDGDQ--LPKTME 395 (613)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~-~~~g~--~~~A~~ 395 (613)
+.+++...++...+.+ +.|...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|.+
T Consensus 54 ~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 54 TPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred hHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 3344444444444333 3444455555555555555555555555544432 22344444444432 34444 255555
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 396 VLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 396 l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
++++..+. .| +...+..+..++...|++++|...|+++.+
T Consensus 132 ~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 132 MIDKALAL--DANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555443 22 334444444555555555555555555554
No 120
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.27 E-value=0.00028 Score=63.52 Aligned_cols=116 Identities=13% Similarity=0.137 Sum_probs=48.8
Q ss_pred ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCC--HHHHHH
Q 007193 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF-AGHAGK--VEAAFE 325 (613)
Q Consensus 249 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~--~~~a~~ 325 (613)
+.+++...++...+.+ +.+...|..+...|...|++++|...|++..+.... +...+..+..+ +...|+ .++|..
T Consensus 54 ~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 54 TPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred hHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 3344444444443333 334444444444444444444444444444443322 33333333332 233333 244444
Q ss_pred HHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007193 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (613)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (613)
++++..+.+ +.+...+..+...+.+.|++++|...|+++.+
T Consensus 132 ~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 132 MIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444444443 22334444444444444444444444444443
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.27 E-value=0.0003 Score=63.34 Aligned_cols=158 Identities=16% Similarity=0.091 Sum_probs=83.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 007193 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280 (613)
Q Consensus 201 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 280 (613)
..+-..+...|+-+....+...... ..+.|.......+....+.|++..|...|.+..... ++|...|+.+.-+|-
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~---~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaald 145 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI---AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALD 145 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc---cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHH
Confidence 3344445555555555555444332 123333444445555556666666666666655554 555566666666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHH
Q 007193 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360 (613)
Q Consensus 281 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 360 (613)
+.|++++|..-|.+..+.... +...++.+.-.+.-.|+.+.|..++......+ .-|..+-..|.......|++++|.+
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 146 QLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred HccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHh
Confidence 666666666666655554322 33444555555555566666666665555543 2344555555555556666666655
Q ss_pred HHHH
Q 007193 361 LYEH 364 (613)
Q Consensus 361 ~~~~ 364 (613)
+-..
T Consensus 224 i~~~ 227 (257)
T COG5010 224 IAVQ 227 (257)
T ss_pred hccc
Confidence 5443
No 122
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=0.003 Score=62.69 Aligned_cols=356 Identities=12% Similarity=0.081 Sum_probs=194.5
Q ss_pred HhhhHHHHHHHHHHHhC---CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHH
Q 007193 71 CKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAM 146 (613)
Q Consensus 71 ~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a 146 (613)
..+.|+++.|+.+|-.. .++|.+.|..-..+|+..|++++|++=-..-++. .|+ ...|+....++.-.|++++|
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred hcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHH
Confidence 45678999999999763 3668888888889999999999998766655544 555 66888888888899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHH------HHHhC---CCCCCHHHHHHHHHHHHccC-----
Q 007193 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF-GAYG------IMRSK---NVKPDRVVFNALITACGQSG----- 211 (613)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~------~m~~~---g~~p~~~~~~~li~~~~~~g----- 211 (613)
+.-|.+-++.. +.|...++-+..++ ..+.+. +.|. .+... ........|..++..+-+..
T Consensus 90 ~~ay~~GL~~d-~~n~~L~~gl~~a~----~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 90 ILAYSEGLEKD-PSNKQLKTGLAQAY----LEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHhhcC-CchHHHHHhHHHhh----hHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 99999887764 44566666677666 111111 1111 00000 00001112222222221110
Q ss_pred --CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHh-cCChH----HHHHHHHHHHh-cCCCCCHHHHHHHHHHHHhcC
Q 007193 212 --AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN-AGQVD----RAREVYKMIHK-YNIKGTPEVYTIAINCCSQTG 283 (613)
Q Consensus 212 --~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~-~g~~~----~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g 283 (613)
+.+..++....+... ... .+...-..... ...+. ..........+ ....--..-...+.+...+..
T Consensus 165 ~l~d~r~m~a~~~l~~~----~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk 238 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGV----DEL--LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKK 238 (539)
T ss_pred ccccHHHHHHHHHHhcC----ccc--cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 011111111111000 000 00000000000 00000 00000000000 000000123556778888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHH-------HHHHHHHhcCCHH
Q 007193 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS-------SLMGACSNAKNWQ 356 (613)
Q Consensus 284 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------~li~~~~~~g~~~ 356 (613)
+++.|.+.+....+.. .+..-++....+|...|.+.+....-....+.|.. ...-|+ .+..+|.+.++++
T Consensus 239 ~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~ 315 (539)
T KOG0548|consen 239 DFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYE 315 (539)
T ss_pred hHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHH
Confidence 9999999999888775 35555666677888888887777666666555421 112222 2334677788899
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHhhcCCHHHHHHHHHHH
Q 007193 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT-YSILLVACERKDDVEVGLMLLSQA 435 (613)
Q Consensus 357 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m 435 (613)
.|...|.+.......|+.. .+....+++++......- +.|.... ...=...+.+.|++..|...+.++
T Consensus 316 ~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteA 384 (539)
T KOG0548|consen 316 GAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEA 384 (539)
T ss_pred HHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 9999998876543333322 233445566665555443 3454322 222256788999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHH
Q 007193 436 KEDGVIPNLVMFKCIIGMC 454 (613)
Q Consensus 436 ~~~g~~p~~~~~~~li~~~ 454 (613)
++.. +-|...|+-.--+|
T Consensus 385 Ikr~-P~Da~lYsNRAac~ 402 (539)
T KOG0548|consen 385 IKRD-PEDARLYSNRAACY 402 (539)
T ss_pred HhcC-CchhHHHHHHHHHH
Confidence 9864 33444554443333
No 123
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.22 E-value=0.0049 Score=60.70 Aligned_cols=242 Identities=14% Similarity=0.093 Sum_probs=163.6
Q ss_pred chhhhHHHHHHHHhcC-CHHHHHHHHHHHHH---cCC-CCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC------CCCH
Q 007193 24 DVSEQLHSYNRLIRQG-RISECIDLLEDMER---KGL-LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP------NPTL 92 (613)
Q Consensus 24 ~~~~~~~~~~~l~~~g-~~~~A~~l~~~m~~---~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~ 92 (613)
..+.+..-.+.|.+.| +.....+.|+++.. .+- +|.-..+|- .-..++.++...-++++ .|+.
T Consensus 201 E~eADr~Gi~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~yl~THP------lp~~RIa~lr~ra~q~p~~~~~d~~~~ 274 (484)
T COG4783 201 EQEADRIGITTLVRAGYDPQGMPEFFERLADQLRYGGQPPEYLLTHP------LPEERIADLRNRAEQSPPYNKLDSPDF 274 (484)
T ss_pred HHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcCCCCChHHhcCC------CchhHHHHHHHHHHhCCCCCCCCCccH
Confidence 3456677778889988 55566788888874 222 222111111 12344666666666665 3455
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007193 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (613)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (613)
..+...+.+......-..+..++....+. .-...-|..-+ .+...|++++|+..++.+...- +-|...+......+
T Consensus 275 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~ 350 (484)
T COG4783 275 QLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDIL 350 (484)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 55555665544433333333333322221 11233344444 3457899999999999988762 44566667777889
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChH
Q 007193 173 AKAGQVAKAFGAYGIMRSKNVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251 (613)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 251 (613)
.+.++..+|.+.++++... .|+ ....-.+..++.+.|+..+|..+++..... .+.|...|..|..+|...|+..
T Consensus 351 ~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~---~p~dp~~w~~LAqay~~~g~~~ 425 (484)
T COG4783 351 LEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN---DPEDPNGWDLLAQAYAELGNRA 425 (484)
T ss_pred HHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc---CCCCchHHHHHHHHHHHhCchH
Confidence 9999999999999999887 566 555667788999999999999999988764 4667889999999999999988
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 252 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (613)
++..-.. .+|...|+++.|...+....+.
T Consensus 426 ~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 426 EALLARA------------------EGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHH------------------HHHHhCCCHHHHHHHHHHHHHh
Confidence 7765443 4566778999999988888765
No 124
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.20 E-value=0.00091 Score=72.51 Aligned_cols=239 Identities=8% Similarity=0.031 Sum_probs=142.8
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 007193 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA 167 (613)
Q Consensus 89 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 167 (613)
+.+...|..|+..+...+++++|.++.+...+. .|+ ...|-.+...+.+.++.+++..+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~ 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------N 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence 456778888999998999999999998876665 343 33333333366666665555444 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhc
Q 007193 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (613)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~ 247 (613)
++.......++.-+..+...|... .-+...+..+..+|-+.|+.+++..+++++.+-. +.|..+.|.+...|+..
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D---~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD---RDNPEIVKKLATSYEEE 163 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHh
Confidence 333333344443344444444443 2244567778888888888888888888887642 45677888888888888
Q ss_pred CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007193 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327 (613)
Q Consensus 248 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 327 (613)
++++|.+++.+.... |...+++..+.+++.++....+. +...+..++
T Consensus 164 -dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~---------------- 210 (906)
T PRK14720 164 -DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIE---------------- 210 (906)
T ss_pred -hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHH----------------
Confidence 888888887776654 45556777777777777665332 222222221
Q ss_pred HHHHHC-CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007193 328 QEAKNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (613)
Q Consensus 328 ~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (613)
+.+... +..--..++-.+-..|-+.++++++..+++.+.+.. +.|.....-++.+|.
T Consensus 211 ~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 211 RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 111111 111223344445555666666666666666666543 234444555555554
No 125
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.19 E-value=0.0001 Score=62.75 Aligned_cols=95 Identities=8% Similarity=-0.107 Sum_probs=57.6
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007193 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (613)
Q Consensus 95 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (613)
+......+.+.|++++|...|+...... +.+...|..+..++...|++++|...|+...... +.+...+..+..++.+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 3344555566666666666666666543 4455566666666666666666666666666543 3455566666666666
Q ss_pred cCCHHHHHHHHHHHHhC
Q 007193 175 AGQVAKAFGAYGIMRSK 191 (613)
Q Consensus 175 ~g~~~~A~~~~~~m~~~ 191 (613)
.|+.++|...|+.....
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666666554
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.17 E-value=0.0095 Score=58.75 Aligned_cols=141 Identities=13% Similarity=0.081 Sum_probs=87.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCH
Q 007193 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355 (613)
Q Consensus 276 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 355 (613)
.-.+...|++++|+..+..+...-+. |...+....+.+...++.++|.+.++.+.... +......-.+..+|.+.|++
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCCh
Confidence 33445566777777777776655322 44455555666677777777777777766653 22245555666677777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 007193 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435 (613)
Q Consensus 356 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 435 (613)
.+|..+++...... +-|+..|..|..+|...|+..+|....-++ +...|+++.|...+...
T Consensus 391 ~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 391 QEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG------------------YALAGRLEQAIIFLMRA 451 (484)
T ss_pred HHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHHHHHHHHHHH
Confidence 77777766665443 445667777777777777766665544332 34566777777766666
Q ss_pred HH
Q 007193 436 KE 437 (613)
Q Consensus 436 ~~ 437 (613)
.+
T Consensus 452 ~~ 453 (484)
T COG4783 452 SQ 453 (484)
T ss_pred HH
Confidence 54
No 127
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.15 E-value=0.0017 Score=70.40 Aligned_cols=141 Identities=11% Similarity=0.020 Sum_probs=96.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHH
Q 007193 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGA 111 (613)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 111 (613)
.+.+...+++++|.++.++..+.. |.....+...+-++.+.++.++|..+ .++.......++...
T Consensus 38 i~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~~~~~~v 102 (906)
T PRK14720 38 IDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQNLKWAIV 102 (906)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccccchhHH
Confidence 334448899999999999777765 55555554444455555554444322 444555555556555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007193 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (613)
Q Consensus 112 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (613)
..+...|... .-+...+-.+..+|-+.|+.++|.++|+++.+.. +-|+.+.|.+...|+.. ++++|..++.+....
T Consensus 103 e~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 103 EHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 5555555553 3345577778888888888888888888888876 55788888888888888 888888888777643
No 128
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.14 E-value=0.00017 Score=61.30 Aligned_cols=90 Identities=11% Similarity=-0.024 Sum_probs=41.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh
Q 007193 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390 (613)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 390 (613)
...+...|++++|...|....... +.+...+..+..++.+.|++++|...|++..+.. +.+...+..+..++...|++
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCH
Confidence 334444444444544444444443 3344444444444444555555555554444432 22344444444444445555
Q ss_pred hHHHHHHHHHHh
Q 007193 391 PKTMEVLSDMKS 402 (613)
Q Consensus 391 ~~A~~l~~~m~~ 402 (613)
++|+..|+...+
T Consensus 109 ~eAi~~~~~Al~ 120 (144)
T PRK15359 109 GLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHH
Confidence 555555544444
No 129
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.12 E-value=0.00077 Score=72.24 Aligned_cols=235 Identities=10% Similarity=0.099 Sum_probs=161.8
Q ss_pred CHHHHHHHHHHHHHcCChhHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007193 126 DCKLYTTLITTCAKSGKVDAM-FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204 (613)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~a-~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 204 (613)
++.....+=.+.+..|..++| .+++.+..+ ++....+-....+++.-....... ...+...+..|.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~La 93 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRR-YPHTELFQVLVA 93 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHh-ccccHHHHHHHH
Confidence 344444444556666776665 566666553 222233333333333333333222 345678888889
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 007193 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283 (613)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 283 (613)
....+.|..++|..+++...+. .|| ......+...+.+.+++++|....++....+ +.+......+..++.+.|
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~~----~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g 168 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQR----FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIG 168 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHhh----CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhc
Confidence 9999999999999999998863 555 5566678888999999999999999999886 677888899999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 007193 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363 (613)
Q Consensus 284 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (613)
++++|..+|++....+.. +..++..+..++-..|+.++|...|+...+.. .+...-|+.++ +++..-...++
T Consensus 169 ~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~~~~~~~~~ 240 (694)
T PRK15179 169 QSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDLNADLAALR 240 (694)
T ss_pred chHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHHHHHHHHHH
Confidence 999999999999985543 47788888889999999999999999988763 34445555544 23344455666
Q ss_pred HHHhCC----CCCCHHHHHHHHHHHHc
Q 007193 364 HMKSIK----LKPTVSTMNALITALCD 386 (613)
Q Consensus 364 ~m~~~~----~~~~~~~~~~li~~~~~ 386 (613)
++.-.+ ....+.+...+|.-|.+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (694)
T PRK15179 241 RLGVEGDGRDVPVSILVLEKMLQEIGR 267 (694)
T ss_pred HcCcccccCCCceeeeeHHHHHHHHhh
Confidence 654332 22233445555555554
No 130
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.11 E-value=4.7e-06 Score=51.24 Aligned_cols=33 Identities=30% Similarity=0.665 Sum_probs=24.4
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 007193 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (613)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 408 (613)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
No 131
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.10 E-value=0.0019 Score=69.29 Aligned_cols=163 Identities=10% Similarity=0.043 Sum_probs=123.3
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007193 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309 (613)
Q Consensus 230 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 309 (613)
.+.+...+-.|.....+.|.+++|..+++...+.. +.+......+...+.+.+++++|+..+++.....+. +......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 34567778888888888999999999999888875 556677888888889999999999999988887654 5666777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 007193 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389 (613)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 389 (613)
+..++.+.|++++|..+|+++...+ +.+..++..+...+-+.|+.++|...|+...+.. .+....|+.++. +
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~ 231 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------D 231 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------H
Confidence 7778888899999999999988743 4557788888888888999999999998887643 344555555543 2
Q ss_pred hhHHHHHHHHHHh
Q 007193 390 LPKTMEVLSDMKS 402 (613)
Q Consensus 390 ~~~A~~l~~~m~~ 402 (613)
...-..+++++.-
T Consensus 232 ~~~~~~~~~~~~~ 244 (694)
T PRK15179 232 LNADLAALRRLGV 244 (694)
T ss_pred HHHHHHHHHHcCc
Confidence 3334455555543
No 132
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.0028 Score=57.25 Aligned_cols=118 Identities=16% Similarity=0.100 Sum_probs=56.4
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh
Q 007193 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390 (613)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 390 (613)
.+..+.+-|.+.++.|.+-. +..|.+.|..++.+ .+.+..|.-+|++|.+. ..|+..+.+.+..++...|++
T Consensus 148 lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~ 223 (299)
T KOG3081|consen 148 LKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRY 223 (299)
T ss_pred HHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCH
Confidence 34444555555555554432 33344444443332 23455556666665542 245555555555566666666
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHH-HHHHHHHHHHH
Q 007193 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE-VGLMLLSQAKE 437 (613)
Q Consensus 391 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~-~a~~~~~~m~~ 437 (613)
++|..++++..... .-++.|...++-.-...|... ...+...++..
T Consensus 224 eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 224 EEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 66666666655542 224444444444434444332 23334444443
No 133
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.07 E-value=6.3e-06 Score=50.67 Aligned_cols=33 Identities=42% Similarity=0.743 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 007193 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196 (613)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 196 (613)
+||++|++|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.01 E-value=0.0003 Score=59.34 Aligned_cols=86 Identities=12% Similarity=0.155 Sum_probs=32.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHH
Q 007193 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393 (613)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 393 (613)
+...|++++|...++.+...+ +.+...+..+...+.+.|++++|...+++..+.+ +.+...+..+...|...|++++|
T Consensus 27 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A 104 (135)
T TIGR02552 27 LYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEPESA 104 (135)
T ss_pred HHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCHHHH
Confidence 333344444444443333322 2233333333334444444444444444333322 12233333333334444444444
Q ss_pred HHHHHHHH
Q 007193 394 MEVLSDMK 401 (613)
Q Consensus 394 ~~l~~~m~ 401 (613)
+..|+...
T Consensus 105 ~~~~~~al 112 (135)
T TIGR02552 105 LKALDLAI 112 (135)
T ss_pred HHHHHHHH
Confidence 44444333
No 135
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.98 E-value=1.2e-05 Score=49.10 Aligned_cols=33 Identities=45% Similarity=0.794 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 007193 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195 (613)
Q Consensus 163 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 195 (613)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666555
No 136
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.97 E-value=1.1e-05 Score=49.25 Aligned_cols=32 Identities=28% Similarity=0.485 Sum_probs=16.1
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 007193 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (613)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 407 (613)
+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44555555555555555555555555544444
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.94 E-value=0.0005 Score=57.97 Aligned_cols=93 Identities=15% Similarity=0.167 Sum_probs=43.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 007193 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (613)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 209 (613)
...+...+...|++++|.+.|+.....+ +.+...|..+...+.+.|++++|...|++....+ +.+...+..+...+..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 3334444444555555555555544432 2344444444455555555555555555444332 2233444444444555
Q ss_pred cCCHHHHHHHHHHHh
Q 007193 210 SGAVDRAFDVLAEMN 224 (613)
Q Consensus 210 ~g~~~~a~~~~~~m~ 224 (613)
.|+.++|.+.|+...
T Consensus 98 ~g~~~~A~~~~~~al 112 (135)
T TIGR02552 98 LGEPESALKALDLAI 112 (135)
T ss_pred cCCHHHHHHHHHHHH
Confidence 555555555554444
No 138
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=0.013 Score=52.71 Aligned_cols=186 Identities=12% Similarity=0.060 Sum_probs=84.1
Q ss_pred CCHHHHHHHHHHHHh---CC-CCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCCh
Q 007193 176 GQVAKAFGAYGIMRS---KN-VKPDRVV-FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250 (613)
Q Consensus 176 g~~~~A~~~~~~m~~---~g-~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~ 250 (613)
.+.++.++++.++.. .| ..++..+ |..++-+....|+.+.|...++++.... +-+..+-..-...+-..|++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f---p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF---PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC---CCChhHHHHHHHHHHHhhch
Confidence 344555555555542 12 3333332 2233344445555556666655555431 11111111111123344555
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (613)
Q Consensus 251 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 330 (613)
++|.++++.+.+.+ +.|..++-.=+...-..|+.-+|++-+....+.- ..|...|.-+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F-~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF-MNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 55555555555554 4444444444444444455555555555554442 235555555555555555555555555555
Q ss_pred HHCCCCcCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHh
Q 007193 331 KNQGISVGIISYSSLMGACSNAK---NWQKALELYEHMKS 367 (613)
Q Consensus 331 ~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~ 367 (613)
.-.. |.++..+..+.+.+.-.| +++.|.+.|.+..+
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4443 233333334444333222 23344445544443
No 139
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.87 E-value=0.058 Score=57.29 Aligned_cols=223 Identities=12% Similarity=0.058 Sum_probs=157.1
Q ss_pred hhHHHHHHHHHHHhCC--CCCHHHHHHHHHH--HHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 007193 73 SQKAIKEAFRFFKLVP--NPTLSTFNMLMSV--CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148 (613)
Q Consensus 73 ~~~~~~~A~~~~~~~~--~~~~~~~~~li~~--~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 148 (613)
..+++..|++...+.. .||. .|..++++ +.+.|+.++|..+++.....+. .|..|...+-..|...++.++|..
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHHHH
Confidence 4567888888877654 3433 34444554 5688999999999888876653 388899999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC----------HHHHHH
Q 007193 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA----------VDRAFD 218 (613)
Q Consensus 149 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----------~~~a~~ 218 (613)
+|+..... .|+......+..+|++.+++.+-.++--+|-+. ++-+...|-++++...+... ..-|.+
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 99999876 678888888889999988876554444444332 34456677677776665422 234666
Q ss_pred HHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007193 219 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (613)
Q Consensus 219 ~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 297 (613)
.++.+..+. |-..+..-.-.-...+...|++++|.+++. ...+.-...+...-+.-+..+...+++.+..++-.++..
T Consensus 176 m~~~~l~~~-gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 176 MVQKLLEKK-GKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHhccC-CccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 777777653 311222222223345667888999999994 444444444556667778889999999999999999998
Q ss_pred CCCC
Q 007193 298 KGVI 301 (613)
Q Consensus 298 ~g~~ 301 (613)
.|..
T Consensus 255 k~~D 258 (932)
T KOG2053|consen 255 KGND 258 (932)
T ss_pred hCCc
Confidence 8753
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.83 E-value=0.0011 Score=65.78 Aligned_cols=125 Identities=10% Similarity=0.082 Sum_probs=99.7
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007193 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (613)
Q Consensus 94 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (613)
.-.++++.+...++++.|..+|+++.+.. |++ ...++..+...++-.+|.+++.+..+.. +.+......-...+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34456667777889999999999998764 554 3457777778888889999998888653 446667777777888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHhh
Q 007193 174 KAGQVAKAFGAYGIMRSKNVKPDRV-VFNALITACGQSGAVDRAFDVLAEMNA 225 (613)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~ 225 (613)
+.++.+.|+.+.+++... .|+.. +|..|..+|.+.|+++.|+..++.+..
T Consensus 246 ~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred hcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 999999999999999876 56544 899999999999999999999888753
No 141
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.82 E-value=0.0003 Score=69.87 Aligned_cols=117 Identities=14% Similarity=0.159 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007193 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQ--GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381 (613)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 381 (613)
...+..++..+....+++.+..++...... ....-..|..++++.|.+.|..+.+..++..=...|+-||..++|.||
T Consensus 66 ~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lm 145 (429)
T PF10037_consen 66 SLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLM 145 (429)
T ss_pred HHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHH
Confidence 334444444444444444444444444333 111122233344444444444444444444444444444444444444
Q ss_pred HHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 007193 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420 (613)
Q Consensus 382 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 420 (613)
+.+.+.|++..|.++..+|..++...+..|+...+.+|.
T Consensus 146 d~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 146 DHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 444444444444444444444333344444444443333
No 142
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.73 E-value=0.1 Score=56.19 Aligned_cols=184 Identities=9% Similarity=0.037 Sum_probs=116.6
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 007193 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA 221 (613)
Q Consensus 142 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 221 (613)
+...|...|-+..+.. .--...|..|...|+...+...|.+.|++..+.. ..+...+......|++..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 3555555555554432 1224567788888887778888888888887653 3355667777888888888888888743
Q ss_pred HHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007193 222 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301 (613)
Q Consensus 222 ~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 301 (613)
...+.. ....-...|-...-.|...++...|..-|+.....+ +.|...|..+..+|..+|++..|.++|.+.....
T Consensus 551 ~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-- 626 (1238)
T KOG1127|consen 551 RAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-- 626 (1238)
T ss_pred HHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--
Confidence 332210 000001112223334566777888888888777765 5667788888888888888888888888776653
Q ss_pred CCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHH
Q 007193 302 PDEVFLSA--LIDFAGHAGKVEAAFEILQEAKN 332 (613)
Q Consensus 302 p~~~~~~~--li~~~~~~g~~~~a~~~~~~~~~ 332 (613)
|+. +|.. ....-+..|.+.+|...+.....
T Consensus 627 P~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 627 PLS-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred cHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 322 2221 12234567888888887777654
No 143
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.73 E-value=0.00074 Score=67.16 Aligned_cols=125 Identities=14% Similarity=0.131 Sum_probs=80.9
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHH
Q 007193 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272 (613)
Q Consensus 193 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 272 (613)
.+.+......+++.+....+++.+..++.+..........-..|..++++.|.+.|..+.+..++..=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 34455666666666666666777777766665542222122234457777777777777777777777777777777777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007193 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317 (613)
Q Consensus 273 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 317 (613)
|.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777777776665555556665555555554
No 144
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.71 E-value=3.6e-05 Score=45.65 Aligned_cols=29 Identities=34% Similarity=0.671 Sum_probs=15.7
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 007193 376 TMNALITALCDGDQLPKTMEVLSDMKSLG 404 (613)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g 404 (613)
+|+.||++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 145
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.70 E-value=0.0019 Score=64.08 Aligned_cols=120 Identities=17% Similarity=0.149 Sum_probs=48.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007193 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319 (613)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 319 (613)
|+..+...++++.|..+|+++.+.+ |+ ....++..+...++-.+|.+++++..+.... +...+..-...+.+.++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 3334444444444444444444433 11 2223344444444444444444444433221 23333333333444444
Q ss_pred HHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365 (613)
Q Consensus 320 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (613)
.+.|+.+.+++.+.. +.+..+|..|..+|.+.|+++.|+..++.+
T Consensus 250 ~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 250 YELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 444444444444332 223334444444444444444444444433
No 146
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.70 E-value=4.3e-05 Score=45.35 Aligned_cols=29 Identities=38% Similarity=0.673 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007193 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (613)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 192 (613)
+||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555666666666666666665555544
No 147
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.65 E-value=0.0042 Score=52.97 Aligned_cols=85 Identities=20% Similarity=0.212 Sum_probs=36.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhc
Q 007193 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDR--VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (613)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~ 247 (613)
..+...|++++|...|+........|+. .....|...+...|++++|+..++..... ......+....+.|.+.
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~----~~~~~~~~~~Gdi~~~~ 131 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE----AFKALAAELLGDIYLAQ 131 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc----chHHHHHHHHHHHHHHC
Confidence 3444445555555555555444311111 12222334444455555555555442211 12233334444555555
Q ss_pred CChHHHHHHHH
Q 007193 248 GQVDRAREVYK 258 (613)
Q Consensus 248 g~~~~A~~~~~ 258 (613)
|+.++|...|+
T Consensus 132 g~~~~A~~~y~ 142 (145)
T PF09976_consen 132 GDYDEARAAYQ 142 (145)
T ss_pred CCHHHHHHHHH
Confidence 55555555544
No 148
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.65 E-value=0.0031 Score=53.82 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=6.5
Q ss_pred HhcCChHHHHHHHHHHH
Q 007193 245 ANAGQVDRAREVYKMIH 261 (613)
Q Consensus 245 ~~~g~~~~A~~~~~~~~ 261 (613)
...|++++|...|+.+.
T Consensus 59 ~~~g~~~~A~~~l~~~~ 75 (145)
T PF09976_consen 59 YEQGDYDEAKAALEKAL 75 (145)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 33333333333333333
No 149
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.64 E-value=0.00079 Score=52.31 Aligned_cols=41 Identities=17% Similarity=0.375 Sum_probs=20.5
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHH
Q 007193 99 MSVCASSKDSEGAFQVLRLVQEAGL-KADCKLYTTLITTCAK 139 (613)
Q Consensus 99 i~~~~~~~~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~ 139 (613)
|..|...+++.....+|+.+++.|+ .|++.+|+.++...++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~ 73 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAK 73 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 3344444555555555555555555 4555555555554443
No 150
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.63 E-value=0.00085 Score=52.14 Aligned_cols=81 Identities=17% Similarity=0.358 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHHH
Q 007193 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPNVHTYGALIDGCAKAG--------QVAKAFGAYGIMRSKNVKPDRVV 199 (613)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~ 199 (613)
|-...|.-+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344556666677999999999999999999 899999999999888753 35678999999999999999999
Q ss_pred HHHHHHHHHc
Q 007193 200 FNALITACGQ 209 (613)
Q Consensus 200 ~~~li~~~~~ 209 (613)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 151
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.56 E-value=0.16 Score=54.05 Aligned_cols=67 Identities=15% Similarity=0.152 Sum_probs=38.5
Q ss_pred HHHHHHHHHcCCChh---HHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHH
Q 007193 377 MNALITALCDGDQLP---KTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445 (613)
Q Consensus 377 ~~~li~~~~~~g~~~---~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~ 445 (613)
-+.|+..+.+.++.. +|+-+++.-... .| |..+-..+|..|+-.|-+..|...++.+--..+.-|..
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~--s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTl 509 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTK--SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTL 509 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhc--CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccc
Confidence 355666777766654 344444443332 23 44444566677777777777777777665444554443
No 152
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=0.059 Score=48.70 Aligned_cols=185 Identities=16% Similarity=0.158 Sum_probs=80.2
Q ss_pred ChHHHHHHHHHHHH---cC-CCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHH
Q 007193 107 DSEGAFQVLRLVQE---AG-LKADCK-LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH-TYGALIDGCAKAGQVAK 180 (613)
Q Consensus 107 ~~~~A~~~~~~m~~---~g-~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~ 180 (613)
+.++..+++..+.. .| ..++.. .|..++-+...+|+.+.|...++.+...- |... +-..-.-.+-..|++++
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhh
Confidence 34444454444432 12 233332 23344444455555666665555554431 2211 11111111223455555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007193 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260 (613)
Q Consensus 181 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 260 (613)
|.++++.+.+.. +.|.+++--=+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~---F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK---FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 666655555543 334444433333333334444444444444432 3445555555555555555555555555555
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHC
Q 007193 261 HKYNIKGTPEVYTIAINCCSQTG---DWEFACSVYDDMTKK 298 (613)
Q Consensus 261 ~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~ 298 (613)
.-.. |.++..+..+...+.-.| +.+.+.+.|.+..+.
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 4432 233333333333332222 233444444444443
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.53 E-value=0.0041 Score=50.79 Aligned_cols=18 Identities=17% Similarity=0.073 Sum_probs=6.9
Q ss_pred HHHHccCCHHHHHHHHHH
Q 007193 205 TACGQSGAVDRAFDVLAE 222 (613)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~ 222 (613)
.++.+.|+++.|.+.|+.
T Consensus 47 ~~~~~~~~~~~A~~~~~~ 64 (119)
T TIGR02795 47 EAYYAQGKYADAAKAFLA 64 (119)
T ss_pred HHHHhhccHHHHHHHHHH
Confidence 333333333333333333
No 154
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.50 E-value=0.0022 Score=49.56 Aligned_cols=90 Identities=20% Similarity=0.211 Sum_probs=41.1
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007193 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (613)
Q Consensus 98 li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 177 (613)
+...+...|++++|...++...+.. +.+...+..+...+...+++++|.+.|+...... +.+..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 3334444455555555555544432 2223344444444445555555555555444432 2223344444444555555
Q ss_pred HHHHHHHHHHHH
Q 007193 178 VAKAFGAYGIMR 189 (613)
Q Consensus 178 ~~~A~~~~~~m~ 189 (613)
.+.|...+....
T Consensus 84 ~~~a~~~~~~~~ 95 (100)
T cd00189 84 YEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHH
Confidence 555555444443
No 155
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.47 E-value=0.003 Score=53.10 Aligned_cols=93 Identities=15% Similarity=0.104 Sum_probs=68.1
Q ss_pred hhHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhC---CCCCHHHHHHHHHHH
Q 007193 27 EQLHSYNR-LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVC 102 (613)
Q Consensus 27 ~~~~~~~~-l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~ 102 (613)
..++.+.. |...|++++|..+|+-+...+ |++..++..++.++...|++.+|+..|... .+.|+..+-.+...+
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 44444433 447888888888888888877 778778777888888888888888888753 345667777777777
Q ss_pred HcCCChHHHHHHHHHHHHc
Q 007193 103 ASSKDSEGAFQVLRLVQEA 121 (613)
Q Consensus 103 ~~~~~~~~A~~~~~~m~~~ 121 (613)
...|+.+.|.+.|+..+..
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 7888888888877766654
No 156
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.38 E-value=0.0043 Score=54.70 Aligned_cols=51 Identities=16% Similarity=0.271 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 007193 231 DPDHITIGALMKACAN-----AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281 (613)
Q Consensus 231 ~~~~~~~~~ll~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 281 (613)
..|..+|..+++.|.+ .|.++-....+..|.+.|+..|..+|+.|++.+=+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 3456666666666653 35666677777777888887788888887776654
No 157
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.38 E-value=0.0042 Score=47.87 Aligned_cols=14 Identities=29% Similarity=0.489 Sum_probs=5.1
Q ss_pred HHhcCCHHHHHHHH
Q 007193 349 CSNAKNWQKALELY 362 (613)
Q Consensus 349 ~~~~g~~~~A~~~~ 362 (613)
+...|+.++|...+
T Consensus 78 ~~~~~~~~~a~~~~ 91 (100)
T cd00189 78 YYKLGKYEEALEAY 91 (100)
T ss_pred HHHHHhHHHHHHHH
Confidence 33333333333333
No 158
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.38 E-value=0.0084 Score=48.93 Aligned_cols=98 Identities=14% Similarity=0.041 Sum_probs=46.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--CCHHHHHHHHHH
Q 007193 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK--GTPEVYTIAINC 278 (613)
Q Consensus 201 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~ 278 (613)
..+...+.+.|++++|.+.|..+.....+-......+..+...+.+.|+++.|...|+.+...... ....++..+...
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 344444555555555555555554321110111223334555555555555565555555443211 113344555555
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 007193 279 CSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 279 ~~~~g~~~~a~~~~~~m~~~ 298 (613)
+.+.|++++|...++++.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 55555555555555555554
No 159
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.34 E-value=0.0029 Score=55.81 Aligned_cols=100 Identities=11% Similarity=0.193 Sum_probs=55.3
Q ss_pred CHHhHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHH
Q 007193 338 GIISYSSLMGACSN-----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412 (613)
Q Consensus 338 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 412 (613)
+..+|..+++.|.+ .|..+=....+..|.+.|+..|..+|+.|++.+=+ |.+- -..+|+.+-
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F----------- 112 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF----------- 112 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh-----------
Confidence 45555555555543 35555555666677777777777777777766654 2211 011111111
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007193 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456 (613)
Q Consensus 413 ~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 456 (613)
. -.-.+.+-|++++++|...|+-||..++..|++.+++
T Consensus 113 ----~--hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~ 150 (228)
T PF06239_consen 113 ----M--HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGR 150 (228)
T ss_pred ----c--cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcc
Confidence 0 1122344566666777666777777777777666665
No 160
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.34 E-value=0.12 Score=53.35 Aligned_cols=333 Identities=12% Similarity=0.089 Sum_probs=171.2
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH-cCCCC--------CHHHHHHHHHHHHHcCChhHHH
Q 007193 77 IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE-AGLKA--------DCKLYTTLITTCAKSGKVDAMF 147 (613)
Q Consensus 77 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-~g~~~--------~~~~~~~li~~~~~~g~~~~a~ 147 (613)
+++|.++.+. +|.+..|..+.......-.++.|...|-+... .|++. +...-.+=+. +--|.+++|+
T Consensus 679 ledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeae 754 (1189)
T KOG2041|consen 679 LEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAE 754 (1189)
T ss_pred hHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhh
Confidence 4555555544 56778898888777777777777777755432 12211 0001111122 2348899999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 007193 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (613)
Q Consensus 148 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 226 (613)
++|-+|.+++ .-|..+.+.|++-.+.++++.--.. .-..-...|+.+...+.....+++|.+.+..-..
T Consensus 755 k~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~- 824 (1189)
T KOG2041|consen 755 KLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD- 824 (1189)
T ss_pred hhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-
Confidence 9998886542 3456677778887777766542110 0011134677777777777777777777765321
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 007193 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306 (613)
Q Consensus 227 ~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 306 (613)
....+.++.+..++++-+.+-..++ .+....-.|.+++...|.-++|.+.|-+... |
T Consensus 825 ----------~e~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p---- 881 (1189)
T KOG2041|consen 825 ----------TENQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P---- 881 (1189)
T ss_pred ----------hHhHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhccC----c----
Confidence 1123444555555544444333332 2234455566666666666666665543211 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHh--------------HHHHHHHHHhcCCHHHHHHHHHHHHh----C
Q 007193 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS--------------YSSLMGACSNAKNWQKALELYEHMKS----I 368 (613)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--------------~~~li~~~~~~g~~~~A~~~~~~m~~----~ 368 (613)
...+..|...+++.+|.++-+...- |.+.+ ...-|..+.+.|+.-.|-+++.+|.+ .
T Consensus 882 -kaAv~tCv~LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K 956 (1189)
T KOG2041|consen 882 -KAAVHTCVELNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEK 956 (1189)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhc
Confidence 1233445555555555554433210 00110 11234556677776666666666643 2
Q ss_pred CCCCCHH----HHHH-HHHHH----------HcCCChhHHHHHHHHHHhC-------CCCCCHHHH--HHHHHHHhhcCC
Q 007193 369 KLKPTVS----TMNA-LITAL----------CDGDQLPKTMEVLSDMKSL-------GLCPNTITY--SILLVACERKDD 424 (613)
Q Consensus 369 ~~~~~~~----~~~~-li~~~----------~~~g~~~~A~~l~~~m~~~-------g~~p~~~t~--~~ll~a~~~~g~ 424 (613)
+.++-.. ...+ |+.-+ -++|..++|..+++.-... +..--...| ..+..--...|.
T Consensus 957 ~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~ 1036 (1189)
T KOG2041|consen 957 YVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGR 1036 (1189)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhch
Confidence 2222111 1111 11111 1356777777665543211 111122333 334444455788
Q ss_pred HHHHHHHHHHHHH-cCCCCCHHHHHHHH
Q 007193 425 VEVGLMLLSQAKE-DGVIPNLVMFKCII 451 (613)
Q Consensus 425 ~~~a~~~~~~m~~-~g~~p~~~~~~~li 451 (613)
++.|.+.--.+.+ ..+-|...+|+.+-
T Consensus 1037 v~~Al~Tal~L~DYEd~lpP~eiySllA 1064 (1189)
T KOG2041|consen 1037 VKDALQTALILSDYEDFLPPAEIYSLLA 1064 (1189)
T ss_pred HHHHHHHHhhhccHhhcCCHHHHHHHHH
Confidence 8888776555554 35667777776553
No 161
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.27 E-value=0.0081 Score=57.54 Aligned_cols=130 Identities=12% Similarity=0.060 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHH
Q 007193 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA-CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 242 (613)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~ 242 (613)
+|..+++..-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+. ++.+...|...++
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~---f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK---FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH---HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHH
Confidence 45555555555555555555555555332 1112222222222 22234444455555555542 2344455555555
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 243 ACANAGQVDRAREVYKMIHKYNIKGT---PEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 243 ~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (613)
.+.+.++.+.|+.+|++.... +.++ ...|...+..=.+.|+.+.+.++.+++.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 555556666666666555443 2221 236666666666666666666666666653
No 162
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.26 E-value=0.0063 Score=58.27 Aligned_cols=130 Identities=14% Similarity=0.210 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 007193 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA-CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 276 (613)
Q Consensus 198 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 276 (613)
.+|..+++..-+.+..+.|.++|.+.... ..... .+|...... |...++.+.|.++|+...+. ++.+...|...+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~-~~~~~--~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~ 77 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD-KRCTY--HVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYL 77 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCS-T--HHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC-CCCCH--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHH
Confidence 46777888888888888888888888753 22233 344443333 33356667788888888776 466778888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 277 NCCSQTGDWEFACSVYDDMTKKGVIPDE----VFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (613)
Q Consensus 277 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (613)
+.+.+.++.+.|..+|++.... + |.. ..|...+..=.+.|+++.+.++.+++.+.
T Consensus 78 ~~l~~~~d~~~aR~lfer~i~~-l-~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 78 DFLIKLNDINNARALFERAISS-L-PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHTT-HHHHHHHHHHHCCT-S-SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHh-c-CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888888888888765 2 333 47888888878888888888888888775
No 163
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.21 E-value=0.01 Score=59.12 Aligned_cols=85 Identities=12% Similarity=0.028 Sum_probs=38.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 007193 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395 (613)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 395 (613)
..|++++|+..|.+.++.. +.+...|..+..+|.+.|++++|...+++..+.. +.+...|..+..+|...|++++|+.
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3444444444444444433 2234444444444444555555555554444432 1233444444444445555555555
Q ss_pred HHHHHHh
Q 007193 396 VLSDMKS 402 (613)
Q Consensus 396 l~~~m~~ 402 (613)
.|++..+
T Consensus 92 ~~~~al~ 98 (356)
T PLN03088 92 ALEKGAS 98 (356)
T ss_pred HHHHHHH
Confidence 5554444
No 164
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.14 E-value=0.12 Score=48.25 Aligned_cols=177 Identities=8% Similarity=-0.034 Sum_probs=101.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007193 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVY---TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (613)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 316 (613)
....+...|++++|.+.|+.+.... +.+.... -.++.++.+.+++++|...+++..+..+.-...-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 3344556777778887777776653 2223322 34566677778888888888777765443222333333333321
Q ss_pred --cC---------------C---HHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 007193 317 --AG---------------K---VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376 (613)
Q Consensus 317 --~g---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 376 (613)
.+ + ...|...|+.+++ -|-...-..+|...+..+... . ...
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A~~rl~~l~~~---l-a~~ 177 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDATKRLVFLKDR---L-AKY 177 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHHHHHHHHHHHH---H-HHH
Confidence 10 1 1233344444433 333334445555544444320 0 111
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 007193 377 MNALITALCDGDQLPKTMEVLSDMKSL--GLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436 (613)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 436 (613)
--.+..-|.+.|.+..|..-++.+.+. +.+........+..+|...|..++|.++...+.
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 114556688888898898888888874 233345566777888999999999888776554
No 165
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.14 E-value=0.013 Score=58.33 Aligned_cols=89 Identities=13% Similarity=0.067 Sum_probs=55.5
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007193 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180 (613)
Q Consensus 101 ~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 180 (613)
.+...|+++.|+..|+...+.. +.+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 3445566666666666666554 3455566666666666666666666666666553 3345556666666666666666
Q ss_pred HHHHHHHHHhC
Q 007193 181 AFGAYGIMRSK 191 (613)
Q Consensus 181 A~~~~~~m~~~ 191 (613)
|+..|++....
T Consensus 89 A~~~~~~al~l 99 (356)
T PLN03088 89 AKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHh
Confidence 66666666654
No 166
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.14 E-value=0.0017 Score=46.94 Aligned_cols=62 Identities=21% Similarity=0.288 Sum_probs=45.7
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC--CCCHHHHHHH
Q 007193 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNML 98 (613)
Q Consensus 35 l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l 98 (613)
|++.|++++|+.+|+++.... |.+..+...++.++...|++++|.++++++. .|+...|..+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 467888999999999988877 6677777778888888888888888888775 3443344433
No 167
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.11 E-value=0.028 Score=49.49 Aligned_cols=82 Identities=13% Similarity=0.116 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHH
Q 007193 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPD--EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (613)
Q Consensus 272 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (613)
+..+...+...|++++|...|++.......+. ...+..+...+.+.|++++|...+.+..+.. +.+...+..+...|
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 33334444444444444444444433221111 1233444444444444444444444444432 12233333334444
Q ss_pred HhcCC
Q 007193 350 SNAKN 354 (613)
Q Consensus 350 ~~~g~ 354 (613)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 44443
No 168
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.08 E-value=0.036 Score=57.74 Aligned_cols=62 Identities=15% Similarity=0.065 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 374 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
...|.++.-.....|++++|...+++..+. .|+...|..+...+...|+.++|...+++...
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344444444444455555555555555553 34555555555555555555555555555554
No 169
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.08 E-value=0.021 Score=48.14 Aligned_cols=95 Identities=12% Similarity=0.040 Sum_probs=56.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007193 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (613)
Q Consensus 94 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (613)
..-.+...+...|++++|..+|+.+.... +-+..-|-.|.-++-..|++++|+..|....... +-|...+-.+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 33344444556666666666666665543 3344455556666666666666666666666554 335555666666666
Q ss_pred hcCCHHHHHHHHHHHHh
Q 007193 174 KAGQVAKAFGAYGIMRS 190 (613)
Q Consensus 174 ~~g~~~~A~~~~~~m~~ 190 (613)
..|+.+.|.+.|+....
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666665543
No 170
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.02 E-value=0.13 Score=47.98 Aligned_cols=58 Identities=10% Similarity=0.019 Sum_probs=37.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 007193 344 SLMGACSNAKNWQKALELYEHMKSI--KLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (613)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 401 (613)
.+...|.+.|.+..|..-|+.+.+. +.+........++.+|.+.|..++|.+....+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 4555677777777777777777653 112233455567777777888777777665543
No 171
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=0.26 Score=44.89 Aligned_cols=144 Identities=14% Similarity=0.145 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHH---
Q 007193 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM--- 346 (613)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li--- 346 (613)
.+.+.++..+.-.|.+.-...++++..+.....+....+.+.+.-.+.|+.+.|...|+...+..-..|..+.+.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 35667777777888888888888888887766678888888888888999999999998877654344444444433
Q ss_pred --HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007193 347 --GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416 (613)
Q Consensus 347 --~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 416 (613)
..|.-..++-.|...|.++...+ ..|+...|.-.-+..-.|+..+|++.++.|... .|...+-.+++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 34555677888888888777654 345555554444444568888899988888874 56555544433
No 172
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.00 E-value=0.0015 Score=49.69 Aligned_cols=17 Identities=18% Similarity=0.305 Sum_probs=6.6
Q ss_pred HHHHHhcCCHHHHHHHH
Q 007193 346 MGACSNAKNWQKALELY 362 (613)
Q Consensus 346 i~~~~~~g~~~~A~~~~ 362 (613)
..+|.+.|++++|..++
T Consensus 32 a~~~~~~~~y~~A~~~~ 48 (84)
T PF12895_consen 32 AQCYFQQGKYEEAIELL 48 (84)
T ss_dssp HHHHHHTTHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHH
Confidence 33333333333333333
No 173
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.99 E-value=0.037 Score=48.73 Aligned_cols=92 Identities=11% Similarity=0.090 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 007193 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD--CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (613)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 168 (613)
....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 344567777778888899999988888876532222 3577788888888899999998888887753 3345666667
Q ss_pred HHHHHhcCCHHHHHH
Q 007193 169 IDGCAKAGQVAKAFG 183 (613)
Q Consensus 169 i~~~~~~g~~~~A~~ 183 (613)
...+...|+...+..
T Consensus 113 g~~~~~~g~~~~a~~ 127 (172)
T PRK02603 113 AVIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHHcCChHhHhh
Confidence 777777776554443
No 174
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.94 E-value=0.03 Score=49.12 Aligned_cols=80 Identities=14% Similarity=0.119 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 007193 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP--DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (613)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 347 (613)
..|..+...+...|++++|...|+........| ...++..+...+...|++++|...+....+.. +....++..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 345555555556666666666666665442222 12345555566666666666666666655442 223334444444
Q ss_pred HHH
Q 007193 348 ACS 350 (613)
Q Consensus 348 ~~~ 350 (613)
.+.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 444
No 175
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.93 E-value=0.65 Score=48.24 Aligned_cols=315 Identities=11% Similarity=0.049 Sum_probs=166.2
Q ss_pred hHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHHcCChhHHHHH
Q 007193 74 QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA----DCKLYTTLITTCAKSGKVDAMFEV 149 (613)
Q Consensus 74 ~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~----~~~~~~~li~~~~~~g~~~~a~~~ 149 (613)
.|.+++|.++|-.+...|. .|..+.+.|++-...++++.- |-.. -...|+.+...++....+++|.+.
T Consensus 747 ~g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred hcchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4779999999988876654 345666777777776665421 1111 145678888888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC
Q 007193 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 229 (613)
Q Consensus 150 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 229 (613)
|..-. +. ...+.++.+..++++-..+-+.+. -|....-.+..++.+.|.-++|.+.|-+..
T Consensus 819 Y~~~~------~~---e~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~s----- 879 (1189)
T KOG2041|consen 819 YSYCG------DT---ENQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRRS----- 879 (1189)
T ss_pred HHhcc------ch---HhHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhcc-----
Confidence 76543 11 234556666666665555554443 244555667778888888888877775432
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHH----------HHHHHHHHHHhcCCHHHHHHHHHHHHH--
Q 007193 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE----------VYTIAINCCSQTGDWEFACSVYDDMTK-- 297 (613)
Q Consensus 230 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----------~~~~li~~~~~~g~~~~a~~~~~~m~~-- 297 (613)
.|. +.+..|...+++.+|.++-+...-..+..-.. -.---|..+.+.|++-+|-+++.+|.+
T Consensus 880 -~pk-----aAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e 953 (1189)
T KOG2041|consen 880 -LPK-----AAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAERE 953 (1189)
T ss_pred -CcH-----HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHH
Confidence 121 23455666777777776654332111100000 011124456666777777777777754
Q ss_pred --CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 007193 298 --KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375 (613)
Q Consensus 298 --~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 375 (613)
++.+|-..--.-++.+.. ..+..++.+-.+....+|...+... +...|-..++.++.+..-+ .....
T Consensus 954 ~~K~~p~lr~KklYVL~AlL-vE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr---gAEAy 1022 (1189)
T KOG2041|consen 954 QEKYVPYLRLKKLYVLGALL-VENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR---GAEAY 1022 (1189)
T ss_pred hhccCCHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh---hHHHH
Confidence 233321111111111111 1223333333333344443322221 1122333333333332221 12233
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 007193 376 TMNALITALCDGDQLPKTMEVLSDMKS-LGLCPNTITYSILLVACERKDDVEVGLMLL 432 (613)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 432 (613)
.|..|..-....|..+.|++.--.+.+ ..+-|-...|+.+.-+.+....+...-+.|
T Consensus 1023 HFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAf 1080 (1189)
T KOG2041|consen 1023 HFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAF 1080 (1189)
T ss_pred HHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHH
Confidence 444455555667888888876544443 336677788887766555544444444434
No 176
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.92 E-value=0.004 Score=47.28 Aligned_cols=80 Identities=15% Similarity=0.150 Sum_probs=43.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHcCCChHHHHHHH
Q 007193 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMSVCASSKDSEGAFQVL 115 (613)
Q Consensus 38 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~ 115 (613)
+|+++.|+.+|+++.+......+..+...++..+.+.|++++|..++++.. +.+....-.+..++.+.|++++|+.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 577778888888777765211133333335556666666666666665521 122233333455566666666666665
Q ss_pred HH
Q 007193 116 RL 117 (613)
Q Consensus 116 ~~ 117 (613)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 53
No 177
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.90 E-value=0.021 Score=50.15 Aligned_cols=63 Identities=11% Similarity=-0.022 Sum_probs=25.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007193 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (613)
Q Consensus 200 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 262 (613)
|..+...+...|++++|...|.+.............++..+...+...|++++|...++....
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333344444444455555444444322100000112344444444445555555555544443
No 178
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.86 E-value=0.078 Score=55.33 Aligned_cols=146 Identities=10% Similarity=-0.078 Sum_probs=103.0
Q ss_pred cCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHH
Q 007193 263 YNIKGTPEVYTIAINCCSQTG-----DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG--------KVEAAFEILQE 329 (613)
Q Consensus 263 ~~~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~ 329 (613)
...+.+...|...+.+..... ....|..+|++..+..+. ....+..+..++.... +...+.+....
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 344677889999888865432 367899999999987543 3455555544443321 12333344443
Q ss_pred HHHC-CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 007193 330 AKNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (613)
Q Consensus 330 ~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 408 (613)
.... ..+.+...+..+.-.....|++++|...+++..+.+ |+...|..+...+...|+.++|.+.+++... +.|.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~ 485 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPG 485 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCC
Confidence 3332 234456777777777777899999999999998865 7888999999999999999999999999877 4677
Q ss_pred HHHHH
Q 007193 409 TITYS 413 (613)
Q Consensus 409 ~~t~~ 413 (613)
..||.
T Consensus 486 ~pt~~ 490 (517)
T PRK10153 486 ENTLY 490 (517)
T ss_pred CchHH
Confidence 66654
No 179
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.80 E-value=0.0052 Score=44.35 Aligned_cols=50 Identities=16% Similarity=0.214 Sum_probs=20.7
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 007193 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155 (613)
Q Consensus 105 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (613)
.|++++|..+|+.+.... +-+...+..+..+|.+.|++++|.++++.+..
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444444332 22333344444444444444444444444443
No 180
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.78 E-value=0.084 Score=42.80 Aligned_cols=55 Identities=22% Similarity=0.238 Sum_probs=25.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007193 278 CCSQTGDWEFACSVYDDMTKKGVIPD--EVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (613)
Q Consensus 278 ~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (613)
++-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|..+++....
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444555555555555555444322 12233334444455555555555554443
No 181
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.76 E-value=0.016 Score=53.66 Aligned_cols=96 Identities=14% Similarity=0.133 Sum_probs=58.2
Q ss_pred hhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 007193 73 SQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149 (613)
Q Consensus 73 ~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 149 (613)
+.+++.+|+..|.+.. +.|.+.|..-..+|.+.|.++.|.+-.+..+... +.-..+|..|-.+|...|++++|.+.
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~~a 171 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAIEA 171 (304)
T ss_pred HhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 3456666666666533 4456666666666777777777766666655443 22345667777777777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHH
Q 007193 150 FHEMVNAGIEPNVHTYGALIDG 171 (613)
Q Consensus 150 ~~~m~~~g~~~~~~~~~~li~~ 171 (613)
|.+.++. .|+-.+|-.=+..
T Consensus 172 ykKaLel--dP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 172 YKKALEL--DPDNESYKSNLKI 191 (304)
T ss_pred HHhhhcc--CCCcHHHHHHHHH
Confidence 7666654 4555555444443
No 182
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.74 E-value=0.12 Score=49.66 Aligned_cols=209 Identities=15% Similarity=0.120 Sum_probs=106.4
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHcCC
Q 007193 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP-TLSTFNMLMSVCASSK 106 (613)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~ 106 (613)
.....+.+-..|++++|...|.+...-..-..+. ....+.+.+|...+.+.... -+..|...+..|...|
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~---------~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G 108 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDK---------FEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAG 108 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-H---------HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCH---------HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcC
Confidence 3344444556777777777776654321000000 11122344444555444111 1224455556666666
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CChhHHHHHHHHHHH----CCCCC--CHHHHHHHHHHHHhcCCHH
Q 007193 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS-GKVDAMFEVFHEMVN----AGIEP--NVHTYGALIDGCAKAGQVA 179 (613)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~----~g~~~--~~~~~~~li~~~~~~g~~~ 179 (613)
++..|-.++.. +...|... |++++|.+.|.+..+ .| .+ -..++..+...+.+.|+++
T Consensus 109 ~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~ 172 (282)
T PF14938_consen 109 RFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYE 172 (282)
T ss_dssp -HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HH
T ss_pred cHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHH
Confidence 66666554443 34455555 778888887777543 22 11 1234566777888888999
Q ss_pred HHHHHHHHHHhCCCC-----CCHH-HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC--HHHHHHHHHHHHhc--CC
Q 007193 180 KAFGAYGIMRSKNVK-----PDRV-VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD--HITIGALMKACANA--GQ 249 (613)
Q Consensus 180 ~A~~~~~~m~~~g~~-----p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~~~ll~~~~~~--g~ 249 (613)
+|.++|++....-.. .+.. .|-..+-++...||...|.+.+++.....+++..+ ......|+.++-.. ..
T Consensus 173 ~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~ 252 (282)
T PF14938_consen 173 EAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEA 252 (282)
T ss_dssp HHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCC
T ss_pred HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHH
Confidence 999998887654221 1221 22223335566788888888888877543334333 33445556655432 23
Q ss_pred hHHHHHHHHHHH
Q 007193 250 VDRAREVYKMIH 261 (613)
Q Consensus 250 ~~~A~~~~~~~~ 261 (613)
++.+..-|+.+.
T Consensus 253 f~~av~~~d~~~ 264 (282)
T PF14938_consen 253 FTEAVAEYDSIS 264 (282)
T ss_dssp HHHHCHHHTTSS
T ss_pred HHHHHHHHcccC
Confidence 445555554443
No 183
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.73 E-value=0.078 Score=43.01 Aligned_cols=56 Identities=18% Similarity=0.158 Sum_probs=28.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 007193 170 DGCAKAGQVAKAFGAYGIMRSKNVKPD--RVVFNALITACGQSGAVDRAFDVLAEMNA 225 (613)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 225 (613)
.++-..|+.++|+.+|++....|...+ ...+-.+.+.+...|++++|..++++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555666666665555554333 22333444555555666666665555544
No 184
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.59 Score=45.58 Aligned_cols=283 Identities=12% Similarity=0.067 Sum_probs=147.1
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007193 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181 (613)
Q Consensus 102 ~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 181 (613)
+.+..++..|+..+....+.. +-+..-|..-...+...|++++|.--.+.-.+.. +-......-.-.++...++..+|
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHHHH
Confidence 344455666666666666654 3334445444555555666666654443333221 00111122222233333333333
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHH-HHHHhcCChHHHHHHHHHH
Q 007193 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM-KACANAGQVDRAREVYKMI 260 (613)
Q Consensus 182 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll-~~~~~~g~~~~A~~~~~~~ 260 (613)
.+.++ |...+ ....++..++..... +.-+|...++..+- ..+...|+.++|..+--.+
T Consensus 137 ~~~~~---------~~~~~-----------~~anal~~~~~~~~s-~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~i 195 (486)
T KOG0550|consen 137 EEKLK---------SKQAY-----------KAANALPTLEKLAPS-HSREPACFKAKLLKAECLAFLGDYDEAQSEAIDI 195 (486)
T ss_pred HHHhh---------hhhhh-----------HHhhhhhhhhccccc-ccCCchhhHHHHhhhhhhhhcccchhHHHHHHHH
Confidence 33333 11111 111222222222221 11124444444432 4556678888888777666
Q ss_pred HhcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC
Q 007193 261 HKYNIKGTPEVYTIAINC--CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338 (613)
Q Consensus 261 ~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 338 (613)
.+.+- . ..+...+++ +.-.++.+.+...|.+.+..+ |+...-. ......+.+..+...|
T Consensus 196 lkld~-~--n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk----------~~~~~~k~le~~k~~g---- 256 (486)
T KOG0550|consen 196 LKLDA-T--NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSK----------SASMMPKKLEVKKERG---- 256 (486)
T ss_pred Hhccc-c--hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHH----------hHhhhHHHHHHHHhhh----
Confidence 66542 1 233333433 334577788888888877664 4433211 1111222233333333
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHH-
Q 007193 339 IISYSSLMGACSNAKNWQKALELYEHMKSI---KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI- 414 (613)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~- 414 (613)
+-..+.|++..|.+.+.+.... +.+|+...|........+.|+.++|+.--++... .|..-.-.
T Consensus 257 --------N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~----iD~syikal 324 (486)
T KOG0550|consen 257 --------NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK----IDSSYIKAL 324 (486)
T ss_pred --------hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh----cCHHHHHHH
Confidence 2345788888888888877653 3455666677777777888999998888877664 33332222
Q ss_pred --HHHHHhhcCCHHHHHHHHHHHHHc
Q 007193 415 --LLVACERKDDVEVGLMLLSQAKED 438 (613)
Q Consensus 415 --ll~a~~~~g~~~~a~~~~~~m~~~ 438 (613)
-..++.-.+++++|.+.++...+.
T Consensus 325 l~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 325 LRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 224455678888888888887764
No 185
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.65 E-value=0.028 Score=52.14 Aligned_cols=94 Identities=18% Similarity=0.202 Sum_probs=49.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHH
Q 007193 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTM 394 (613)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~ 394 (613)
+.+++.+|+..|.+.++.. +-|.+.|..=..+|++.|.++.|++=.+.....+ |. ..+|..|-.+|...|++++|+
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD--p~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID--PHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHccCcHHHHH
Confidence 4455555555555555543 3344455555555555555555555555444321 22 345555555555556666666
Q ss_pred HHHHHHHhCCCCCCHHHHHH
Q 007193 395 EVLSDMKSLGLCPNTITYSI 414 (613)
Q Consensus 395 ~l~~~m~~~g~~p~~~t~~~ 414 (613)
+.|++.++ +.|+..+|-.
T Consensus 170 ~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 170 EAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHhhhc--cCCCcHHHHH
Confidence 55555554 4555555443
No 186
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.65 E-value=0.21 Score=48.00 Aligned_cols=111 Identities=20% Similarity=0.265 Sum_probs=54.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHH
Q 007193 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT-GDWEFACSVYDDMTK----KGVIPD--EVFLSALIDF 313 (613)
Q Consensus 241 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~----~g~~p~--~~~~~~li~~ 313 (613)
+..|...|++..|-+.+.. +...|-.. |++++|++.|.+..+ .| .+. ..++..+...
T Consensus 101 ~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHH
Confidence 3445566666555544433 33344444 667777777666543 22 111 2344555566
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCc-----CHH-hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007193 314 AGHAGKVEAAFEILQEAKNQGISV-----GII-SYSSLMGACSNAKNWQKALELYEHMKS 367 (613)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~-----~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (613)
+.+.|++++|.++|+++....... +.. .+...+-++...|+...|.+.|++...
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 667777777777777666542211 111 122223344556667777777766654
No 187
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.49 E-value=0.013 Score=41.75 Aligned_cols=54 Identities=9% Similarity=0.094 Sum_probs=26.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007193 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (613)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (613)
.+.+.|++++|...|+++.+.. +-+...|..+..++.+.|++++|...|+++.+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555555555555433 12344444555555555555555555555443
No 188
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.083 Score=49.33 Aligned_cols=100 Identities=12% Similarity=0.044 Sum_probs=48.3
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCHHHH
Q 007193 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA---GQVAKAFGAYGIMRSKNVKPDRVVF 200 (613)
Q Consensus 124 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~~~ 200 (613)
+-|...|-.|...|...|+.+.|..-|.+..+.. .+|...+..+..++... ....++..+|+++.... +-|..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 4455555555555555555555555555554442 33444444444433322 12345555555555442 2233333
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhh
Q 007193 201 NALITACGQSGAVDRAFDVLAEMNA 225 (613)
Q Consensus 201 ~~li~~~~~~g~~~~a~~~~~~m~~ 225 (613)
..|...+...|++.+|...++.|.+
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh
Confidence 3444455555555555555555554
No 189
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.41 E-value=0.33 Score=49.81 Aligned_cols=42 Identities=29% Similarity=0.300 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHh
Q 007193 41 ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86 (613)
Q Consensus 41 ~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 86 (613)
+-+-+.-++++.++|-+|... ++...+.-.|.+.+|.++|++
T Consensus 616 ~L~li~EL~~~k~rge~P~~i----LlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 616 YLELISELEERKKRGETPNDL----LLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHHHHHhcCCCchHH----HHHHHHHhhhhHHHHHHHHHH
Confidence 333444455555666554433 233345556667777766654
No 190
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.37 E-value=0.015 Score=41.42 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=18.8
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (613)
Q Consensus 138 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (613)
.+.|++++|.+.|+++.+.. +-+...+..+...+.+.|++++|...|+++
T Consensus 8 ~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 8 YQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33344444444444443332 113333333333444444444444444433
No 191
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.19 Score=46.95 Aligned_cols=100 Identities=17% Similarity=0.072 Sum_probs=52.4
Q ss_pred CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC---ChhHHHHHHHHHHhCCCCC-CHHH
Q 007193 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD---QLPKTMEVLSDMKSLGLCP-NTIT 411 (613)
Q Consensus 336 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p-~~~t 411 (613)
+-|...|-.|...|...|+.+.|..-|....+.. .++...+..+..++.... ...++..+|+++... .| |..+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHH
Confidence 4455566666666666666666666666555432 234444444444433221 234556666666553 34 3333
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 007193 412 YSILLVACERKDDVEVGLMLLSQAKED 438 (613)
Q Consensus 412 ~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (613)
...+..++...|++.+|...|+.|.+.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 444445566666666666666666653
No 192
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.35 E-value=0.018 Score=41.61 Aligned_cols=60 Identities=17% Similarity=0.159 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 007193 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG-DWEFACSVYDDMT 296 (613)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~ 296 (613)
+|..+...+...|++++|...|++..+.+ +.+...|..+..+|.+.| ++++|++.++...
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 34444444444444555554444444443 333444444444444444 3444444444443
No 193
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.33 E-value=1.1 Score=43.48 Aligned_cols=108 Identities=12% Similarity=0.106 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 007193 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350 (613)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 350 (613)
+.+..|.-+...|+...|.++-.+.. .|+...|-..+.+++..+++++-..+-.. +-++.-|-.++..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 34444556666777777766655442 36777788888888888888776654321 123567777888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHH
Q 007193 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398 (613)
Q Consensus 351 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 398 (613)
+.|...+|..+...+. +..-+..|.++|.+.+|.+.-.
T Consensus 249 ~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHH
Confidence 8888888777766521 2445667777888877766543
No 194
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.26 E-value=0.64 Score=42.13 Aligned_cols=166 Identities=11% Similarity=0.065 Sum_probs=79.2
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--
Q 007193 242 KACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA-- 317 (613)
Q Consensus 242 ~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-- 317 (613)
..+...|++++|.+.|+.+..... +-...+.-.++.++.+.|+++.|...+++..+.-+.....-+...+.+.+..
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQ 92 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHh
Confidence 344556666666666666655421 1113344555666666666666666666665543221112222222222111
Q ss_pred -----------CCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 007193 318 -----------GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (613)
Q Consensus 318 -----------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 386 (613)
+...+|.. .+..++.-|-......+|...+..+.+. . ...--.+...|.+
T Consensus 93 ~~~~~~~~~D~~~~~~A~~---------------~~~~li~~yP~S~y~~~A~~~l~~l~~~---l-a~~e~~ia~~Y~~ 153 (203)
T PF13525_consen 93 IPGILRSDRDQTSTRKAIE---------------EFEELIKRYPNSEYAEEAKKRLAELRNR---L-AEHELYIARFYYK 153 (203)
T ss_dssp HHHHH-TT---HHHHHHHH---------------HHHHHHHH-TTSTTHHHHHHHHHHHHHH---H-HHHHHHHHHHHHC
T ss_pred CccchhcccChHHHHHHHH---------------HHHHHHHHCcCchHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHH
Confidence 11122222 3334444444445555555555444320 0 1111224566777
Q ss_pred CCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhhcCCHHHH
Q 007193 387 GDQLPKTMEVLSDMKSLGLCPNT----ITYSILLVACERKDDVEVG 428 (613)
Q Consensus 387 ~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a 428 (613)
.|.+..|..-++.+.+. -|+. .....++.++.+.|..+.+
T Consensus 154 ~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp TT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred cccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 88888888888877764 3432 3445666777777776644
No 195
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.25 E-value=0.022 Score=41.11 Aligned_cols=62 Identities=18% Similarity=0.200 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHH
Q 007193 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMV 154 (613)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~ 154 (613)
+.+|..+...+...|++++|+..|+...+.. +.+...|..+..+|.+.| ++++|++.|++..
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 3445555555555555555555555555543 334445555555555555 4555555555544
No 196
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.20 E-value=2.1 Score=45.20 Aligned_cols=80 Identities=18% Similarity=0.174 Sum_probs=36.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCH
Q 007193 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355 (613)
Q Consensus 276 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 355 (613)
+.-+...|+..+|.++-.+.. .||...|-.-+.+++..+++++-+++-+.. -.+.-|.-++..|.+.|+.
T Consensus 691 v~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAksk------ksPIGy~PFVe~c~~~~n~ 760 (829)
T KOG2280|consen 691 VTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSK------KSPIGYLPFVEACLKQGNK 760 (829)
T ss_pred HHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhcc------CCCCCchhHHHHHHhcccH
Confidence 333444455555544443332 244444555555555555554433332211 1133444555555555555
Q ss_pred HHHHHHHHHH
Q 007193 356 QKALELYEHM 365 (613)
Q Consensus 356 ~~A~~~~~~m 365 (613)
++|.+++.+.
T Consensus 761 ~EA~KYiprv 770 (829)
T KOG2280|consen 761 DEAKKYIPRV 770 (829)
T ss_pred HHHhhhhhcc
Confidence 5555554443
No 197
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.19 E-value=0.86 Score=41.29 Aligned_cols=46 Identities=9% Similarity=0.063 Sum_probs=25.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHcCCChhH
Q 007193 345 LMGACSNAKNWQKALELYEHMKSIKLKPTV----STMNALITALCDGDQLPK 392 (613)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~ 392 (613)
+...|.+.|.+..|..-++.+.+. -|+. ...-.|+.+|.+.|..+.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHH
Confidence 455566777777777777666653 2332 234455666666666553
No 198
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.16 E-value=0.091 Score=49.48 Aligned_cols=60 Identities=22% Similarity=0.136 Sum_probs=24.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 239 ALMKACANAGQVDRAREVYKMIHKYN--IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (613)
.+...|...|++++|...|+.+.+.. -+.....+..+...+...|+.++|..+|+.+.+.
T Consensus 185 ~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 185 WLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34444444444444444444444321 0111223333334444444555555555444443
No 199
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.13 E-value=0.11 Score=50.18 Aligned_cols=265 Identities=15% Similarity=0.069 Sum_probs=136.4
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHHcCChhHHHHHHHHHH--H--CCC-CCCHHHHHHHHHH
Q 007193 101 VCASSKDSEGAFQVLRLVQEAGLKADCK----LYTTLITTCAKSGKVDAMFEVFHEMV--N--AGI-EPNVHTYGALIDG 171 (613)
Q Consensus 101 ~~~~~~~~~~A~~~~~~m~~~g~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~--~--~g~-~~~~~~~~~li~~ 171 (613)
-+++.|+......+|+..++.| ..|.. .|..|-++|.-.+++++|++.+..=+ . .|- .-...+...|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 3778888888888888888877 33433 45566667777778888887654311 0 000 0011122223333
Q ss_pred HHhcCCHHHHHHHHHHH----HhCCCC-CCHHHHHHHHHHHHccCC--------------------HHHHHHHHHHHhhC
Q 007193 172 CAKAGQVAKAFGAYGIM----RSKNVK-PDRVVFNALITACGQSGA--------------------VDRAFDVLAEMNAE 226 (613)
Q Consensus 172 ~~~~g~~~~A~~~~~~m----~~~g~~-p~~~~~~~li~~~~~~g~--------------------~~~a~~~~~~m~~~ 226 (613)
+--.|.+++|+-.-.+- .+.|-+ .....+..+...|...|+ ++.|.++|.+-.+-
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 44455555554332211 111100 012233445555544432 23333443322110
Q ss_pred C--CC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH----hcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-
Q 007193 227 V--HP-VDPDHITIGALMKACANAGQVDRAREVYKMIH----KYNIK-GTPEVYTIAINCCSQTGDWEFACSVYDDMTK- 297 (613)
Q Consensus 227 ~--~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~----~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~- 297 (613)
. .+ --.--..|..|.+.|.-.|+++.|....+.-. +.|-. .....+..+.+++.-.|+++.|.+.++.-..
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 0 00 00112234455555556677777776654322 11111 1124566777777777888888877765432
Q ss_pred ---CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 298 ---KGV-IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ-----GISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (613)
Q Consensus 298 ---~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (613)
.|- .....+..+|...|.-..++.+|+.++.+-... ...-....+.+|..+|...|..++|+.+.+.-.
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 221 112345556666776667777777777653221 112234567777777777777777776665443
No 200
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.09 E-value=0.15 Score=52.08 Aligned_cols=215 Identities=13% Similarity=0.158 Sum_probs=115.0
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHH---------HHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCC
Q 007193 124 KADCKLYTTLITTCAKSGKVDAMFEV---------FHEMVNAGIEPNVHTYGALIDGCAKAGQ--VAKAFGAYGIMRSKN 192 (613)
Q Consensus 124 ~~~~~~~~~li~~~~~~g~~~~a~~~---------~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g 192 (613)
.|-.+.+.+=+..|...|.+++|.++ ++.+... ..+..-++.-=.+|.+-.+ +-+...-+++++++|
T Consensus 553 ~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rg 630 (1081)
T KOG1538|consen 553 SAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRG 630 (1081)
T ss_pred ecccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcC
Confidence 34444555566667788888877654 2222111 1123334555566766554 344555567788888
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHH------------HHH
Q 007193 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY------------KMI 260 (613)
Q Consensus 193 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~------------~~~ 260 (613)
-.|+.... ...++-.|.+.+|-++|.+--.+ +..+.+|.....++.|.+++ ++-
T Consensus 631 e~P~~iLl---A~~~Ay~gKF~EAAklFk~~G~e-----------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKR 696 (1081)
T KOG1538|consen 631 ETPNDLLL---ADVFAYQGKFHEAAKLFKRSGHE-----------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKR 696 (1081)
T ss_pred CCchHHHH---HHHHHhhhhHHHHHHHHHHcCch-----------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 77887643 34566678888888888764321 12334444444444444443 211
Q ss_pred Hh--cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-----H-HHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007193 261 HK--YNIKGTPEVYTIAINCCSQTGDWEFACSVYDD-----M-TKKGV---IPDEVFLSALIDFAGHAGKVEAAFEILQE 329 (613)
Q Consensus 261 ~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-----m-~~~g~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 329 (613)
.+ +++... .+-...+...|+.++|..+.-+ | .+-+- ..+..+...+...+-+...+..|.++|..
T Consensus 697 A~WAr~~keP----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k 772 (1081)
T KOG1538|consen 697 ADWARNIKEP----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLK 772 (1081)
T ss_pred HHHhhhcCCc----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHH
Confidence 11 111111 1223344455666666554321 1 11111 12334455555555566667777777776
Q ss_pred HHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007193 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (613)
Q Consensus 330 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (613)
|-.. .++++.....+++.+|..+-+...+
T Consensus 773 ~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 773 MGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 6432 3566677778888888887776654
No 201
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.04 E-value=0.11 Score=50.33 Aligned_cols=266 Identities=18% Similarity=0.075 Sum_probs=148.6
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHH--HhC--CCC-CCHHHHHHHHH
Q 007193 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVH----TYGALIDGCAKAGQVAKAFGAYGIM--RSK--NVK-PDRVVFNALIT 205 (613)
Q Consensus 135 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m--~~~--g~~-p~~~~~~~li~ 205 (613)
.-+|+.|+......+|+..++.|-+ |.. .|..|.++|.-.+++++|++....= ..+ |-+ -...+...|-+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 3468999999999999999988733 433 4666777777788888888764321 110 100 01111222233
Q ss_pred HHHccCCHHHHHHHHHHH----hhCCCCCCCCHHHHHHHHHHHHhcCC--------------------hHHHHHHHHHHH
Q 007193 206 ACGQSGAVDRAFDVLAEM----NAEVHPVDPDHITIGALMKACANAGQ--------------------VDRAREVYKMIH 261 (613)
Q Consensus 206 ~~~~~g~~~~a~~~~~~m----~~~~~~~~~~~~~~~~ll~~~~~~g~--------------------~~~A~~~~~~~~ 261 (613)
.+--.|.+++|.-.-.+- .+-+..+ .....+-.+...|...|+ ++.|.++|.+=.
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv-~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRV-LESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHH-hhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 333344455544321111 0000000 112334445555554432 233444443211
Q ss_pred ----hcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 262 ----KYNI-KGTPEVYTIAINCCSQTGDWEFACSVYDDMT----KKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (613)
Q Consensus 262 ----~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 331 (613)
+.|- -..-..|..|.+.|.-.|+++.|+...+.-. +-|-. .....++.+..++.-.|.++.|.+.|+...
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 1110 0011356667777777888988887765432 22211 123467777788888888888888877643
Q ss_pred H----CC-CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh----C-CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 007193 332 N----QG-ISVGIISYSSLMGACSNAKNWQKALELYEHMKS----I-KLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (613)
Q Consensus 332 ~----~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 401 (613)
. .| -.....+..+|.+.|.-..++++|+.++.+-.. . ...-...++.+|..+|...|..++|+.+.+.-.
T Consensus 263 ~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 2 22 123455677788888888888888888765321 1 112234567778888888888888887776654
Q ss_pred h
Q 007193 402 S 402 (613)
Q Consensus 402 ~ 402 (613)
+
T Consensus 343 ~ 343 (639)
T KOG1130|consen 343 R 343 (639)
T ss_pred H
Confidence 3
No 202
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.96 E-value=0.046 Score=46.64 Aligned_cols=69 Identities=16% Similarity=0.286 Sum_probs=34.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHH
Q 007193 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS-----KNVKPDRVV 199 (613)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~ 199 (613)
...++..+...|++++|.++...+.... +-|...|..+|.+|...|+...|.+.|+++.. .|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3344555555666666666666655543 33555666666666666666666666655532 255555443
No 203
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.96 E-value=0.12 Score=42.27 Aligned_cols=50 Identities=14% Similarity=0.225 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHH
Q 007193 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 243 (613)
Q Consensus 193 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~ 243 (613)
..|+..+..+++.+|+..+++..|+++.+..... .+++-+..+|..|+.-
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~-Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK-YPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHH
Confidence 4455555555555555555555555555555543 3355455555555543
No 204
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.94 E-value=0.39 Score=40.84 Aligned_cols=57 Identities=16% Similarity=0.159 Sum_probs=24.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (613)
Q Consensus 273 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 330 (613)
..++..+...|++++|..+...+....+. |...|..+|.+|...|+...|.+.|+.+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 33444444444444444444444443322 4444444444444444444444444443
No 205
>PRK15331 chaperone protein SicA; Provisional
Probab=95.89 E-value=0.14 Score=43.59 Aligned_cols=84 Identities=17% Similarity=0.203 Sum_probs=56.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhC---CCCCHHHHHHHHHHHHcCCChHHH
Q 007193 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEGA 111 (613)
Q Consensus 35 l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~A 111 (613)
+.+.|++++|..+|.-+..-+ +++..+..-++.++...+++++|+..|... ...|+..+-.....+...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHH
Confidence 347778888888887777766 566666666677777777777777777542 234444455556666777777777
Q ss_pred HHHHHHHHH
Q 007193 112 FQVLRLVQE 120 (613)
Q Consensus 112 ~~~~~~m~~ 120 (613)
...|.....
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 777776665
No 206
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.87 E-value=0.15 Score=48.03 Aligned_cols=89 Identities=17% Similarity=0.087 Sum_probs=37.3
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcC
Q 007193 173 AKAGQVAKAFGAYGIMRSKNVKPDR----VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248 (613)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g 248 (613)
.+.|++++|...|+.+... .|+. ..+-.+...|...|++++|...|..+......-+.....+-.+...+...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 3344455555555544443 2221 233334444445555555555555544321111111222333333444455
Q ss_pred ChHHHHHHHHHHHhc
Q 007193 249 QVDRAREVYKMIHKY 263 (613)
Q Consensus 249 ~~~~A~~~~~~~~~~ 263 (613)
+.+.|..+|+.+.+.
T Consensus 232 ~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 232 DTAKAKAVYQQVIKK 246 (263)
T ss_pred CHHHHHHHHHHHHHH
Confidence 555555555544443
No 207
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.77 E-value=0.21 Score=41.01 Aligned_cols=51 Identities=16% Similarity=0.271 Sum_probs=29.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-cCCCCCHHHHHHHHHHH
Q 007193 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHK-YNIKGTPEVYTIAINCC 279 (613)
Q Consensus 229 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~ 279 (613)
++.|+..+..+++.+|+..|++..|.++.+.+.+ .+++.+..+|..|+.-.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4456666666666666666666666666665533 24444455565555543
No 208
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.68 E-value=0.076 Score=38.78 Aligned_cols=51 Identities=8% Similarity=0.056 Sum_probs=20.0
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (613)
Q Consensus 138 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (613)
.+.+++++|.++++.+...+ +.+...|......+.+.|++++|...|+...
T Consensus 6 ~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 6 LQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33444444444444443332 2233333333334444444444444444443
No 209
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.64 E-value=0.085 Score=38.50 Aligned_cols=57 Identities=18% Similarity=0.230 Sum_probs=47.5
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 007193 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157 (613)
Q Consensus 100 ~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 157 (613)
..|.+.++++.|.++++.+...+ +.++..+.....++.+.|++++|.+.|+...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 56778889999999999988875 5577788888888899999999999999888763
No 210
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.61 E-value=1.3 Score=38.22 Aligned_cols=101 Identities=18% Similarity=0.131 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC-CCCCCHHHHH
Q 007193 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH-PVDPDHITIG 238 (613)
Q Consensus 160 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~~ 238 (613)
|++.---.|..+..+.|+..+|...|++...--+--|....-.+.++....++...|...++.+.+-.. +-.|| +..
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chH
Confidence 344444444555555555555555555554433333444444455555555555555555555433210 01122 222
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 007193 239 ALMKACANAGQVDRAREVYKMIHK 262 (613)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~ 262 (613)
.+...+...|...+|+.-|+...+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHH
Confidence 334445555555555555555444
No 211
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.57 E-value=1.4 Score=38.14 Aligned_cols=129 Identities=11% Similarity=0.030 Sum_probs=79.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHH
Q 007193 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK---LKPTVSTM 377 (613)
Q Consensus 301 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~ 377 (613)
.|+...-..|..+....|+..+|...|++...--+--|....-.+.++....++...|...++.+-+.. -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 455555556666777777777777777776665555666666677777777777777777777665532 1222 33
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Q 007193 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433 (613)
Q Consensus 378 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 433 (613)
-.+...|...|.+.+|..-|+..... -|+...-...-..+.+.|+..++..-+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 34556677777777777777777663 4555443334444556666655554433
No 212
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.43 E-value=1.1 Score=38.12 Aligned_cols=123 Identities=11% Similarity=0.145 Sum_probs=82.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCC----CCHHHHHHHHH---HHHcCC
Q 007193 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMS---VCASSK 106 (613)
Q Consensus 34 ~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~---~~~~~~ 106 (613)
.|.+.++.++|+.-|.++.+.|.-............+..+.|+...|...|+++.. |-+.-=..-++ .+...|
T Consensus 67 ~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 67 KLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccc
Confidence 45689999999999999999987555555555556667788889999999988642 22211111111 255677
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 007193 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (613)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (613)
.++......+-+-..+-+.-...-..|--+-.+.|++..|.+.|..+...
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 77777776666655443444455566666666778888888888777653
No 213
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.22 E-value=0.16 Score=46.60 Aligned_cols=123 Identities=18% Similarity=0.218 Sum_probs=67.4
Q ss_pred HHHhCC--CCCHHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 007193 83 FFKLVP--NPTLSTFNMLMSVCAS-----SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155 (613)
Q Consensus 83 ~~~~~~--~~~~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (613)
.|..++ ..|-.+|-..+..+.. .+.++--...++.|.+-|+..|..+|+.|++.+-+-.-
T Consensus 56 ~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf------------- 122 (406)
T KOG3941|consen 56 QFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF------------- 122 (406)
T ss_pred hhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc-------------
Confidence 344444 3455555555544432 23445455555666666666666666666655432211
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHh
Q 007193 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV-DRAFDVLAEMN 224 (613)
Q Consensus 156 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~ 224 (613)
.|.. .+....-.|= .+-+=+++++++|...|+.||..+-..|++++++.+-. .+..++.-.|.
T Consensus 123 ---iP~n-vfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 123 ---IPQN-VFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred ---ccHH-HHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 1111 1111111121 22345788889999899999988888888988887653 33444444443
No 214
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.05 E-value=1.1 Score=45.84 Aligned_cols=168 Identities=13% Similarity=0.175 Sum_probs=100.2
Q ss_pred cchhhhHHHHHHHHhcCCHHHHHHHHH--HHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 007193 23 HDVSEQLHSYNRLIRQGRISECIDLLE--DMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMS 100 (613)
Q Consensus 23 ~~~~~~~~~~~~l~~~g~~~~A~~l~~--~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~ 100 (613)
..++.+..-|...+-+++++++..+.+ ++. .. +| ......++++..+.|..+.|+.+-. |+ ..-..
T Consensus 259 ~~ld~~~~~fk~av~~~d~~~v~~~i~~~~ll-~~-i~--~~~~~~i~~fL~~~G~~e~AL~~~~-----D~---~~rFe 326 (443)
T PF04053_consen 259 YELDLSELEFKTAVLRGDFEEVLRMIAASNLL-PN-IP--KDQGQSIARFLEKKGYPELALQFVT-----DP---DHRFE 326 (443)
T ss_dssp EE--HHHHHHHHHHHTT-HHH-----HHHHTG-GG-----HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHH
T ss_pred EEECHHHHHHHHHHHcCChhhhhhhhhhhhhc-cc-CC--hhHHHHHHHHHHHCCCHHHHHhhcC-----Ch---HHHhH
Confidence 445667778888888899998776664 111 11 12 2335566777777888888876533 22 23344
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007193 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180 (613)
Q Consensus 101 ~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 180 (613)
...+.|+++.|.++.+. ..+...|..|.+...+.|+++-|.+.|.+... |..|+-.|.-.|+.+.
T Consensus 327 LAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~ 391 (443)
T PF04053_consen 327 LALQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREK 391 (443)
T ss_dssp HHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHH
T ss_pred HHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHH
Confidence 56677788877766432 23566888888888888888888888776542 5666667777788777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 007193 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (613)
Q Consensus 181 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 223 (613)
-.++.+.....| -+|..+.++.-.|+.++..+++.+.
T Consensus 392 L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 392 LSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 777776666654 2555556666667777777776553
No 215
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=3.3 Score=38.91 Aligned_cols=141 Identities=15% Similarity=0.080 Sum_probs=63.8
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 007193 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217 (613)
Q Consensus 138 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 217 (613)
...|++.+|..+|+...... +-+...--.+...|...|+.+.|..++..+...--.........-|..+.+.....+..
T Consensus 145 ~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 34555555665555555432 22334444555556666666666666655543321111122122223333333333333
Q ss_pred HHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcC
Q 007193 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI-KGTPEVYTIAINCCSQTG 283 (613)
Q Consensus 218 ~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g 283 (613)
.+-.+.... +.|...-..+...+...|+.+.|.+.+-.+.+++. -.+...-..+++.+.--|
T Consensus 224 ~l~~~~aad----Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 224 DLQRRLAAD----PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 333333221 22444444555556666666666555544433321 122344555555555555
No 216
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.86 E-value=4.3 Score=39.86 Aligned_cols=256 Identities=12% Similarity=0.047 Sum_probs=132.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChH
Q 007193 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSE 109 (613)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~ 109 (613)
|...+..++.+|+..+....+.. |.+..++..-+..+...+.+++|.--.++-. +.......-.-+.+...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHH
Confidence 45668888999999999888876 6666666555555555666666665443321 111111111122222222222
Q ss_pred HHHHHHH------------HH---HHc-CCCCCHHHHHHH-HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007193 110 GAFQVLR------------LV---QEA-GLKADCKLYTTL-ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (613)
Q Consensus 110 ~A~~~~~------------~m---~~~-g~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (613)
+|.+.++ .. ... .-+|...++..+ ...+.-.|+.++|.+.--...+.. ....+...+++.
T Consensus 135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~ 211 (486)
T KOG0550|consen 135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGL 211 (486)
T ss_pred HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhccc
Confidence 3322222 11 111 112333444333 234456677888877766666542 223344444443
Q ss_pred H--hcCCHHHHHHHHHHHHhCCCCCCHHHHHH-------------HHHHHHccCCHHHHHHHHHHHhhCC-CCCCCCHHH
Q 007193 173 A--KAGQVAKAFGAYGIMRSKNVKPDRVVFNA-------------LITACGQSGAVDRAFDVLAEMNAEV-HPVDPDHIT 236 (613)
Q Consensus 173 ~--~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-------------li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~ 236 (613)
+ -.++.+.|..-|++.+.. .|+-..--. -.+-..+.|.+..|.+.+.+.+... ....++...
T Consensus 212 ~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nakl 289 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKL 289 (486)
T ss_pred ccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHH
Confidence 3 356777888888877755 344322111 1122345677777777777765421 112233444
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHC
Q 007193 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~g~~~~a~~~~~~m~~~ 298 (613)
|........+.|+..+|+.--+...+.+- ..+...+ ..++...++|++|.+-|+...+.
T Consensus 290 Y~nra~v~~rLgrl~eaisdc~~Al~iD~---syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 290 YGNRALVNIRLGRLREAISDCNEALKIDS---SYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHhHhhhcccCCchhhhhhhhhhhhcCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555566677777777776666655431 1222222 23344456666776666665543
No 217
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.80 E-value=4.3 Score=39.54 Aligned_cols=296 Identities=17% Similarity=0.128 Sum_probs=127.4
Q ss_pred HHHHHHHHHH--cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhCCCCCCHHH--HHHH
Q 007193 130 YTTLITTCAK--SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC--AKAGQVAKAFGAYGIMRSKNVKPDRVV--FNAL 203 (613)
Q Consensus 130 ~~~li~~~~~--~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~l 203 (613)
|..|-.++.- .|+-..|.++-.+-.+. +..|....-.|+.+- .-.|+.+.|.+-|+.|... |.... ...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 4444444332 34555555554443211 122333333333322 2346666666666666542 22211 1222
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCCHH--HHHHHHHHHH
Q 007193 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI-KGTPE--VYTIAINCCS 280 (613)
Q Consensus 204 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~--~~~~li~~~~ 280 (613)
.-.--+.|+.+.|.+.-++.-..- +.-...+.+++...+..|+++.|+++.+.-....+ .++.. .-..|+.+-.
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~A---p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA 237 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKA---PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA 237 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhc---cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence 222334566666666555554321 11133455566666666666666666655433321 22211 1112222111
Q ss_pred h---cCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHH
Q 007193 281 Q---TGDWEFACSVYDDMTKKGVIPDEVF-LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356 (613)
Q Consensus 281 ~---~g~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 356 (613)
. ..+...|...-.+..+ +.||.+- -.....++.+.|++.++-.+++.+.+....|+. . ++..+.+.|+.
T Consensus 238 ~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~ar~gdt- 310 (531)
T COG3898 238 MSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--A--LLYVRARSGDT- 310 (531)
T ss_pred HHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--H--HHHHHhcCCCc-
Confidence 1 1223333333333322 2233221 112234555666666666666666665433332 2 12223444432
Q ss_pred HHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh-hcCCHHHHHHHHH
Q 007193 357 KALELYEHMKSI-KLKP-TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE-RKDDVEVGLMLLS 433 (613)
Q Consensus 357 ~A~~~~~~m~~~-~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~~~~ 433 (613)
+..-+++.... .++| +..+-..+..+-...|++..|..--+...+ ..|....|..+.+.-. ..||-.++++.+.
T Consensus 311 -a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlA 387 (531)
T COG3898 311 -ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLA 387 (531)
T ss_pred -HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHH
Confidence 11111111110 0122 344444555555556666555554444443 3455555555554433 3366666666666
Q ss_pred HHHHcCCCC
Q 007193 434 QAKEDGVIP 442 (613)
Q Consensus 434 ~m~~~g~~p 442 (613)
+..+..-+|
T Consensus 388 qav~APrdP 396 (531)
T COG3898 388 QAVKAPRDP 396 (531)
T ss_pred HHhcCCCCC
Confidence 665543333
No 218
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=94.66 E-value=4.7 Score=39.29 Aligned_cols=109 Identities=12% Similarity=0.175 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007193 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (613)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 315 (613)
+.+..+.-+...|+...|.++-.+. . .|+...|-..+.+++..++|++-.++... +. ++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s--kK----sPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS--KK----SPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CC----CCCChHHHHHHHH
Confidence 4555567778889988888876554 2 46778899999999999999987775432 22 2366899999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 007193 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364 (613)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 364 (613)
+.|...+|..+... ..+..-+..|.++|++.+|.+.-.+
T Consensus 249 ~~~~~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999988876 2235678889999999999887544
No 219
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.62 E-value=1.5 Score=44.86 Aligned_cols=131 Identities=12% Similarity=0.132 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007193 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (613)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 208 (613)
-.+.++..+-+.|-.+.|+++-..-. .-.....+.|+++.|.++.++. ++...|..|.....
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHH
Confidence 35555555556666655555432211 2223344556666655543322 24456666666666
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007193 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (613)
Q Consensus 209 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 288 (613)
+.|+++-|.+.|.+.. -+..|+-.|.-.|+.+.-.++.+.....| -++....++...|+.++.
T Consensus 359 ~~g~~~lAe~c~~k~~-----------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~c 421 (443)
T PF04053_consen 359 RQGNIELAEECYQKAK-----------DFSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEEC 421 (443)
T ss_dssp HTTBHHHHHHHHHHCT------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHH
T ss_pred HcCCHHHHHHHHHhhc-----------CccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHH
Confidence 6666666666665532 13444445555566555555555555544 244444444445555555
Q ss_pred HHHHHH
Q 007193 289 CSVYDD 294 (613)
Q Consensus 289 ~~~~~~ 294 (613)
.+++.+
T Consensus 422 v~lL~~ 427 (443)
T PF04053_consen 422 VDLLIE 427 (443)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 220
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.59 E-value=7.7 Score=41.76 Aligned_cols=117 Identities=13% Similarity=0.119 Sum_probs=73.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHcCCChHH
Q 007193 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN-PTLSTFNMLMSVCASSKDSEG 110 (613)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~ 110 (613)
.+.|++..-++-|+.+-..-.... .....++.-.+..+...|++++|...|-+... -++ ..+++-+....++.+
T Consensus 341 L~iL~kK~ly~~Ai~LAk~~~~d~--d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~---s~Vi~kfLdaq~Ikn 415 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKSQHLDE--DTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP---SEVIKKFLDAQRIKN 415 (933)
T ss_pred HHHHHHhhhHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh---HHHHHHhcCHHHHHH
Confidence 344556666666666654332111 12344566666777788999999888866431 111 234555666666677
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 007193 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154 (613)
Q Consensus 111 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 154 (613)
--..++.+.+.|+. +...-+.|+.+|.+.++.+.-.++.+...
T Consensus 416 Lt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 416 LTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 77778888888854 44455678899999988887766655543
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.54 E-value=0.13 Score=38.20 Aligned_cols=61 Identities=18% Similarity=0.156 Sum_probs=30.2
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhC--CCC---CC-HHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 007193 376 TMNALITALCDGDQLPKTMEVLSDMKSL--GLC---PN-TITYSILLVACERKDDVEVGLMLLSQAK 436 (613)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~---p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 436 (613)
+|+.+...|...|++++|++.|++..+. ... |+ ..++..+...+...|++++|.+.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555554321 011 11 2344555555666666666666665544
No 222
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.54 E-value=2.1 Score=35.93 Aligned_cols=125 Identities=14% Similarity=0.167 Sum_probs=65.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007193 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317 (613)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 317 (613)
..++..+...+.......+++.+...+ ..+...++.++..|++.+ ..+.++.+.. . ++......++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHHc
Confidence 345555666666777777777766665 355566777777776653 2333333331 1 1223344556666666
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007193 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA-KNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (613)
Q Consensus 318 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (613)
+.++++..++..+.. +...+..+... ++++.|.+++.+- .+...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 666666666654421 11222222223 5566666655531 24455655555443
No 223
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.53 E-value=5.4 Score=39.44 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 271 VYTIAINCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (613)
.+.+++.+..-.|+.++|.+..++|...
T Consensus 307 d~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 307 DVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 3456666667777777777777777665
No 224
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.52 E-value=0.32 Score=44.79 Aligned_cols=118 Identities=21% Similarity=0.297 Sum_probs=78.2
Q ss_pred CCCHHHHHHHHHHHHHc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 007193 124 KADCKLYTTLITTCAKS-----GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198 (613)
Q Consensus 124 ~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 198 (613)
..|-.+|...+..+... +.++-....++.|.+.|++.|..+|+.|++.+=+-.- .|. .
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~-n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQ-N 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccH-H
Confidence 44666677666666543 5567777788889999999999999998887654322 121 1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHh
Q 007193 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV-DRAREVYKMIHK 262 (613)
Q Consensus 199 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~-~~A~~~~~~~~~ 262 (613)
.+....--|-+ +-+-+.+++++|.. +|+.||..+-..|++++.+.+-. .+..++.--|.+
T Consensus 127 vfQ~~F~HYP~--QQ~C~I~vLeqME~--hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 127 VFQKVFLHYPQ--QQNCAIKVLEQMEW--HGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHHHhhCch--hhhHHHHHHHHHHH--cCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 22222222222 23457889999986 58999999999999999998864 344444444443
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.47 E-value=0.12 Score=38.36 Aligned_cols=62 Identities=19% Similarity=0.274 Sum_probs=34.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 007193 340 ISYSSLMGACSNAKNWQKALELYEHMKSI----KL-KPT-VSTMNALITALCDGDQLPKTMEVLSDMK 401 (613)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~ 401 (613)
.+++.+...|...|++++|...|++..+. |- .|+ ..+++.+...|...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555566666666666666666655421 10 111 3455566666666666766666666544
No 226
>PRK15331 chaperone protein SicA; Provisional
Probab=94.11 E-value=3.3 Score=35.37 Aligned_cols=89 Identities=9% Similarity=-0.046 Sum_probs=54.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHH
Q 007193 277 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356 (613)
Q Consensus 277 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 356 (613)
--+...|++++|..+|.-+...++. +..-|..|..+|-..+.+++|...|......+ .-|+..+-....+|...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHH
Confidence 3345667777777777766655443 44445555556666677777777776655443 234444445556666777777
Q ss_pred HHHHHHHHHHh
Q 007193 357 KALELYEHMKS 367 (613)
Q Consensus 357 ~A~~~~~~m~~ 367 (613)
.|...|....+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 77777776665
No 227
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.07 E-value=7.1 Score=38.98 Aligned_cols=420 Identities=13% Similarity=0.142 Sum_probs=200.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCC----chHHHHHHHHHHHhhhHHHHHHHHH---HHhCCCCCHHHHHHHHHH--HHcCCC
Q 007193 37 RQGRISECIDLLEDMERKGLLD----MDKVYHARFFNVCKSQKAIKEAFRF---FKLVPNPTLSTFNMLMSV--CASSKD 107 (613)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~---~~~~~~~~~~~~~~li~~--~~~~~~ 107 (613)
+++++.+|..+|.++..+--.. ....+.+.++.++-.. +.+.-... +++-.+ ...|-.+..+ +-+.+.
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~--~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFG--KSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhhh
Confidence 7899999999998887653211 1133444555554432 23332222 222222 2334444444 456778
Q ss_pred hHHHHHHHHHHHHc--CCC------------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCCCHHHHHHHH
Q 007193 108 SEGAFQVLRLVQEA--GLK------------ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIEPNVHTYGALI 169 (613)
Q Consensus 108 ~~~A~~~~~~m~~~--g~~------------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~~~~~~~li 169 (613)
+.+|.+.+.....+ +.. +|-..=+..++.+...|++.+++.+++++... ....+..+|+.++
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 88888887766554 211 23334466777888888888888888777643 3346788888866
Q ss_pred HHHHhcC--------C-------HHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHhhC
Q 007193 170 DGCAKAG--------Q-------VAKAFGAYGIMRSK------NVKPDRVVFNALITACGQS--GAVDRAFDVLAEMNAE 226 (613)
Q Consensus 170 ~~~~~~g--------~-------~~~A~~~~~~m~~~------g~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~ 226 (613)
-++.+.= . ++-+.-...+|... .+.|....+..++.-..-. .+..--++++..-..
T Consensus 175 lmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~- 253 (549)
T PF07079_consen 175 LMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWEN- 253 (549)
T ss_pred HHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHh-
Confidence 6655431 1 12222222333221 1233333333333322211 112222233332221
Q ss_pred CCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007193 227 VHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKG----TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301 (613)
Q Consensus 227 ~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 301 (613)
.-+.|+ ..+...+...+.. +.+++..+-+.+....+.+ -..++..++....+.++...|.+.+.-+....+.
T Consensus 254 -~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~ 330 (549)
T PF07079_consen 254 -FYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPR 330 (549)
T ss_pred -hccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCc
Confidence 123444 2233344444443 3444444333332221110 1246777777777777777777776665443221
Q ss_pred C--------CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHH---HHHHhcCC-HHHHHHHHHHHHhC
Q 007193 302 P--------DEVFLSALIDF-AGHAGKVEAAFEILQEAKNQGISVGIISYSSLM---GACSNAKN-WQKALELYEHMKSI 368 (613)
Q Consensus 302 p--------~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li---~~~~~~g~-~~~A~~~~~~m~~~ 368 (613)
. ...++-.++.. =...-+...-+.++.......+. ....-..|+ .-+.+.|. -++|.++++.+.+.
T Consensus 331 ~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f 409 (549)
T PF07079_consen 331 ISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF 409 (549)
T ss_pred chhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 1 11222222210 00011222333444444333211 111112222 22344444 66777777777653
Q ss_pred CCCCCHHHHHHHH----HHHHc---CCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHH--HhhcCCHHHHHHHHHHH
Q 007193 369 KLKPTVSTMNALI----TALCD---GDQLPKTMEVLSDMKSLGLCPNT----ITYSILLVA--CERKDDVEVGLMLLSQA 435 (613)
Q Consensus 369 ~~~~~~~~~~~li----~~~~~---~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a--~~~~g~~~~a~~~~~~m 435 (613)
. .-|..+-|.+. ..|.+ ...+.+-+++-+-..+.|+.|-. ..-+-+.+| +...|++.++.-.-.-+
T Consensus 410 t-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL 488 (549)
T PF07079_consen 410 T-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWL 488 (549)
T ss_pred c-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 2 23333333222 12222 22344444554555667777633 333444443 45678887776555555
Q ss_pred HHcCCCCCHHHHHHHHHHHH---hhHHHHHHhhhhh
Q 007193 436 KEDGVIPNLVMFKCIIGMCS---RRYEKARTLNEHV 468 (613)
Q Consensus 436 ~~~g~~p~~~~~~~li~~~~---~~~~~a~~~~~~~ 468 (613)
.+ +.|++.+|.-+ .+|. ++|.+|.......
T Consensus 489 ~~--iaPS~~~~RLl-Gl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 489 TK--IAPSPQAYRLL-GLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HH--hCCcHHHHHHH-HHHHHHHhhHHHHHHHHHhC
Confidence 55 67777777643 3332 2677777766554
No 228
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.00 E-value=4.9 Score=36.95 Aligned_cols=132 Identities=10% Similarity=0.055 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHH-----
Q 007193 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG----- 238 (613)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~----- 238 (613)
+.+.++..+.-.|.+.-...++.+..+...+.++.....|.+.-.+.|+.+.|...|++..+... ..|..+.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~--kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ--KLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh--hhhccchhHHHHh
Confidence 34455555555666666666666666655455566666666666667777777666665543211 11222222
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (613)
.....|.-.+++..|...|+++...+ +.++..-|.-.-+..-.|+..+|++..+.|...
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22223444455666666666666554 334444443333344456666666666666655
No 229
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.98 E-value=1.3 Score=44.47 Aligned_cols=36 Identities=11% Similarity=0.185 Sum_probs=22.8
Q ss_pred CcccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 007193 20 NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKG 55 (613)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~ 55 (613)
..|.+.......-..|.+.|++++|+..|++..+.+
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~ 105 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN 105 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 344445555555556667777777777777776665
No 230
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.98 E-value=3.3 Score=34.80 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=17.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007193 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (613)
Q Consensus 133 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (613)
++..+...+.......+++.+...+ ..+....+.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 3333333444444444444444433 2333444444444443
No 231
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.97 E-value=5.6 Score=37.44 Aligned_cols=143 Identities=13% Similarity=0.069 Sum_probs=80.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCCh
Q 007193 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250 (613)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~ 250 (613)
.....|++.+|..+|....... +-+...--.+..+|...|+.+.|..++..+..+.. .........-+..+.+....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~--~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ--DKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccch--hhHHHHHHHHHHHHHHHhcC
Confidence 4456677777777777766542 22234445566777777777777777777654310 11112222334445555555
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCC
Q 007193 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK--GVIPDEVFLSALIDFAGHAGK 319 (613)
Q Consensus 251 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~ 319 (613)
.+...+-...-.. +.|...-..+...+...|+.+.|.+.+-.+.+. |.. |...-..+++.+.-.|.
T Consensus 220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGP 287 (304)
T ss_pred CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCC
Confidence 5444444443331 335566666777777777777777776666543 333 44555566666655553
No 232
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.83 E-value=7.5 Score=38.46 Aligned_cols=32 Identities=19% Similarity=0.058 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 007193 407 PNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (613)
Q Consensus 407 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (613)
.|---+.+++.++.-.|+.++|.+..++|.+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 34455667788888888888888888888875
No 233
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.82 E-value=2 Score=43.12 Aligned_cols=64 Identities=13% Similarity=0.083 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP---EVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (613)
...++.+..+|.+.|++++|...|++..+.+ +.+. .+|..+..+|.+.|+.++|+..+++..+.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELN-PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4445555555555555555555555555443 1122 23555555555555555555555555543
No 234
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.67 E-value=3.7 Score=42.65 Aligned_cols=179 Identities=14% Similarity=0.149 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHc----cCCHH
Q 007193 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN-VKPD-----RVVFNALITACGQ----SGAVD 214 (613)
Q Consensus 145 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~-----~~~~~~li~~~~~----~g~~~ 214 (613)
-..-+|.-+... +|| ....+++...-.|+-+.+++.+.+..+.+ +.-. ...|+..+..++. ..+.+
T Consensus 175 ~G~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~ 250 (468)
T PF10300_consen 175 FGFGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLE 250 (468)
T ss_pred HHHHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHH
Confidence 344456555543 133 35667777777899999999888776542 2211 1234444444443 45688
Q ss_pred HHHHHHHHHhhCCCCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHhcC--C-CCCHHHHHHHHHHHHhcCCHHHHHH
Q 007193 215 RAFDVLAEMNAEVHPVDPDHITIGAL-MKACANAGQVDRAREVYKMIHKYN--I-KGTPEVYTIAINCCSQTGDWEFACS 290 (613)
Q Consensus 215 ~a~~~~~~m~~~~~~~~~~~~~~~~l-l~~~~~~g~~~~A~~~~~~~~~~~--~-~~~~~~~~~li~~~~~~g~~~~a~~ 290 (613)
.|.+++..+... -|+...|... .+.+...|++++|.+.|+...... . +.....+--+.-.+.-..+|++|.+
T Consensus 251 ~a~~lL~~~~~~----yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 251 EAEELLEEMLKR----YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred HHHHHHHHHHHh----CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 999999999875 4666555443 467788899999999999654321 1 1122344455666788899999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH-------HHHHHHHHHHHH
Q 007193 291 VYDDMTKKGVIPDEVFLSALIDF-AGHAGKV-------EAAFEILQEAKN 332 (613)
Q Consensus 291 ~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~-------~~a~~~~~~~~~ 332 (613)
.|..+.+..-- +..+|.-+..+ +...|+. ++|.++|.++..
T Consensus 327 ~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 327 YFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 99999886432 34444444333 3446767 888899888754
No 235
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.58 E-value=5.1 Score=41.60 Aligned_cols=163 Identities=13% Similarity=0.024 Sum_probs=92.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHH
Q 007193 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE------VFLSALIDFAGH----AGKVEAAFEILQEAKNQGISVGII 340 (613)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~ 340 (613)
....+++...-.|+-+.+++.+.+..+.+-.-.. ..|..++..++. ....+.|.+++..+.+. -|+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence 3444555555555666666555554432111011 122333332222 34567788888888776 34444
Q ss_pred hHH-HHHHHHHhcCCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007193 341 SYS-SLMGACSNAKNWQKALELYEHMKSIKL---KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416 (613)
Q Consensus 341 ~~~-~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 416 (613)
.|. .-.+.+...|++++|.+.|+....... +.....+--+...+.-.+++++|.+.|..+.+.. ..+..+|.-+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~ 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHH
Confidence 443 334556778888888888886543110 1123344456667778889999999999988753 34555555554
Q ss_pred HHH-hhcCCH-------HHHHHHHHHHH
Q 007193 417 VAC-ERKDDV-------EVGLMLLSQAK 436 (613)
Q Consensus 417 ~a~-~~~g~~-------~~a~~~~~~m~ 436 (613)
.+| ...|+. ++|.++|.++.
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 443 346666 66666666654
No 236
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.55 E-value=3.4 Score=33.61 Aligned_cols=62 Identities=18% Similarity=0.132 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007193 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (613)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 369 (613)
....+......|+-++-.+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3444455555566666666665555432 4555555556666666666666666666555544
No 237
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.25 E-value=3.9 Score=33.32 Aligned_cols=139 Identities=15% Similarity=0.131 Sum_probs=74.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHH
Q 007193 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360 (613)
Q Consensus 281 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 360 (613)
-.|..++..++..+..... +..-++-+|--....-+-+-..++++. -|--.|. ..+|++.....
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~Lds---IGkiFDi----------s~C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDS---IGKIFDI----------SKCGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHH---HGGGS-G----------GG-S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHH---HhhhcCc----------hhhcchHHHHH
Confidence 3466666666666665542 333344444333222222222222222 2211222 23455544444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCC
Q 007193 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440 (613)
Q Consensus 361 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~ 440 (613)
.+-.+ ..+.......+..+.+.|+-+.--++..++.+. -.|++....-+..||.+.|+..++-+++.++-+.|+
T Consensus 78 C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 78 CYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 44332 234555667778888899998888888887653 378888888999999999999999999999888875
Q ss_pred C
Q 007193 441 I 441 (613)
Q Consensus 441 ~ 441 (613)
.
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 3
No 238
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.22 E-value=1.5 Score=42.84 Aligned_cols=133 Identities=18% Similarity=0.110 Sum_probs=85.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc----CCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCh
Q 007193 33 NRLIRQGRISECIDLLEDMERK----GLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDS 108 (613)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~ 108 (613)
|.+.+.|++..|...|++.... ..++. ++..... ..-..+++.+.-.+.+.+++
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~------------------ee~~~~~----~~k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDE------------------EEQKKAE----ALKLACHLNLAACYLKLKEY 273 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCH------------------HHHHHHH----HHHHHHhhHHHHHHHhhhhH
Confidence 4567888899888888876542 11111 0000000 11234556666677888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCH-HHHHHHHH
Q 007193 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN-VHTYGALIDGCAKAGQV-AKAFGAYG 186 (613)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~-~~A~~~~~ 186 (613)
..|++.-...+..+ ++|+-..-.-..++...|+++.|+..|.++.+. .|+ -..-+.|+..--+.... +...++|.
T Consensus 274 ~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 274 KEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred HHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888776 667777777778888888888888888888876 444 44444455544444443 34467777
Q ss_pred HHHh
Q 007193 187 IMRS 190 (613)
Q Consensus 187 ~m~~ 190 (613)
.|..
T Consensus 351 ~mF~ 354 (397)
T KOG0543|consen 351 NMFA 354 (397)
T ss_pred HHhh
Confidence 7764
No 239
>PRK11906 transcriptional regulator; Provisional
Probab=93.14 E-value=9.3 Score=38.62 Aligned_cols=143 Identities=13% Similarity=0.114 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHhCC---CCC---HHHHHHHHHH-----HH----cCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 007193 75 KAIKEAFRFFKLVP---NPT---LSTFNMLMSV-----CA----SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139 (613)
Q Consensus 75 ~~~~~A~~~~~~~~---~~~---~~~~~~li~~-----~~----~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 139 (613)
...+.|+.+|.+.. +-| ...|..+.-. +. ......+|.++.+...+.+ +.|......+..+..-
T Consensus 272 ~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 272 ESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHh
Confidence 35677787887755 323 3333322221 11 1234556777777777776 6677777777777777
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHccCCHHHH
Q 007193 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR---VVFNALITACGQSGAVDRA 216 (613)
Q Consensus 140 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~a 216 (613)
.++++.|..+|++....+ +-...+|....-...-+|+.++|.+.+++..+. .|.. ...-..++.|+..+ ++.|
T Consensus 351 ~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~~-~~~~ 426 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPNP-LKNN 426 (458)
T ss_pred hcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCCc-hhhh
Confidence 788888888888877663 223445555555556678888888888886544 3332 22333344555544 5666
Q ss_pred HHHHHH
Q 007193 217 FDVLAE 222 (613)
Q Consensus 217 ~~~~~~ 222 (613)
.+++-+
T Consensus 427 ~~~~~~ 432 (458)
T PRK11906 427 IKLYYK 432 (458)
T ss_pred HHHHhh
Confidence 666644
No 240
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.76 E-value=2.9 Score=39.74 Aligned_cols=116 Identities=9% Similarity=-0.032 Sum_probs=67.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHH----HHHHHHHhcCC
Q 007193 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG----ALMKACANAGQ 249 (613)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~----~ll~~~~~~g~ 249 (613)
-.|++.+|-..++++.+. .+.|...+.-.=++|.-.|+.+.-...++++... ..+|...|. .+.-++..+|-
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~---wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK---WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc---cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 356666666667776654 3556666666666777777777666666666532 233432222 22333445667
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007193 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294 (613)
Q Consensus 250 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 294 (613)
+++|++.-++..+.+ +.|.-+-.+....+-..|++.++.+...+
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 777777666666655 34444445555555666666666665444
No 241
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=92.71 E-value=11 Score=36.98 Aligned_cols=286 Identities=15% Similarity=0.101 Sum_probs=180.8
Q ss_pred hHHHHHHHHHHHhC---CCCCHHHHHHHHHH--HHcCCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcCChhHH
Q 007193 74 QKAIKEAFRFFKLV---PNPTLSTFNMLMSV--CASSKDSEGAFQVLRLVQEAGLKADCK--LYTTLITTCAKSGKVDAM 146 (613)
Q Consensus 74 ~~~~~~A~~~~~~~---~~~~~~~~~~li~~--~~~~~~~~~A~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~a 146 (613)
.|+-..|.++-.+. ...|....-.++.+ -.-.|+++.|.+-|+.|... |... -...|.-..-+.|..+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 45666777665543 23444445555543 45579999999999999852 2221 223344444577888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHH--HHHHHHHHHHc---cCCHHHHHHHH
Q 007193 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-NVKPDRV--VFNALITACGQ---SGAVDRAFDVL 220 (613)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~--~~~~li~~~~~---~g~~~~a~~~~ 220 (613)
...-+..-..- +.-...+.+.+...|..|+++.|+++.+.-+.. -+.++.. .-..|+.+-.. ..+...|...-
T Consensus 174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 88877765542 334667889999999999999999999887654 2344433 22234433221 23455666655
Q ss_pred HHHhhCCCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 007193 221 AEMNAEVHPVDPDHITI-GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK- 298 (613)
Q Consensus 221 ~~m~~~~~~~~~~~~~~-~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~- 298 (613)
.+..+ +.||.+-- ..-..++.+.|++.++-.+++.+-+....| .++...+ +.+.|+. ++.-+++..+.
T Consensus 253 ~~a~K----L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP--~ia~lY~--~ar~gdt--a~dRlkRa~~L~ 322 (531)
T COG3898 253 LEANK----LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP--DIALLYV--RARSGDT--ALDRLKRAKKLE 322 (531)
T ss_pred HHHhh----cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh--HHHHHHH--HhcCCCc--HHHHHHHHHHHH
Confidence 55443 34553322 233477899999999999999998875444 4443322 3455543 33333333221
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHH
Q 007193 299 GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN-AKNWQKALELYEHMKSIKLKPTVST 376 (613)
Q Consensus 299 g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~ 376 (613)
..+| +..+...+..+....|++..|..--+...+. .|....|..|.+.-.. .|+-.++...+.+.... |....
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A---PrdPa 397 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA---PRDPA 397 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC---CCCCc
Confidence 1233 4556667778888889999888777766654 5778888888777654 59999999999888764 43344
Q ss_pred HH
Q 007193 377 MN 378 (613)
Q Consensus 377 ~~ 378 (613)
|+
T Consensus 398 W~ 399 (531)
T COG3898 398 WT 399 (531)
T ss_pred cc
Confidence 54
No 242
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.63 E-value=10 Score=36.54 Aligned_cols=131 Identities=14% Similarity=0.261 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc--cCC----HHHHHHHHHHHhhCCCCC-CCCHHHHHHHHHHHHhcCC-
Q 007193 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQ--SGA----VDRAFDVLAEMNAEVHPV-DPDHITIGALMKACANAGQ- 249 (613)
Q Consensus 178 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g~----~~~a~~~~~~m~~~~~~~-~~~~~~~~~ll~~~~~~g~- 249 (613)
+++.+.+++.|.+.|+.-+..+|-+....... ..+ ...|..+|+.|++..+-+ .++..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556677777777777776665543222222 222 456777888887753222 2344555555433 2222
Q ss_pred ---hHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007193 250 ---VDRAREVYKMIHKYNIKGTPE--VYTIAINCCSQTGD--WEFACSVYDDMTKKGVIPDEVFLSAL 310 (613)
Q Consensus 250 ---~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~l 310 (613)
.+.++..|+.+.+.|+..+.. ..+.++........ ...+.++++.+.+.|+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 244556666666655544322 22222222211111 33566666666666666555544443
No 243
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.57 E-value=3.9 Score=34.04 Aligned_cols=77 Identities=10% Similarity=0.071 Sum_probs=47.3
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007193 99 MSVCASSKDSEGAFQVLRLVQEAGL--KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (613)
Q Consensus 99 i~~~~~~~~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 175 (613)
.....+.|++++|.+.|+.+..+-. +-...+.-.|+.+|.+.+++++|...+++.++.....-..-|...+.+++.-
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 3445567788888888887776521 1234455667777888888888888888877653221223455555555443
No 244
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.52 E-value=2.8 Score=41.10 Aligned_cols=122 Identities=11% Similarity=0.082 Sum_probs=66.6
Q ss_pred HHHhcCChHHHHHHHHHHHhc-----CCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007193 243 ACANAGQVDRAREVYKMIHKY-----NIK---------GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308 (613)
Q Consensus 243 ~~~~~g~~~~A~~~~~~~~~~-----~~~---------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 308 (613)
.|.+.|++..|..-|++.... ..+ .-..+++.+.-+|.+.+++..|++.-...+..+.. |.-..-
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALy 295 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALY 295 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHH
Confidence 455666666666666554321 000 01234566666777777777777777776665432 555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHH-HHHHHHHHH
Q 007193 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK-ALELYEHMK 366 (613)
Q Consensus 309 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~ 366 (613)
.=..+|...|+++.|+..|+.+.+.. |.|-.+-+.|+..--+.....+ ..++|..|-
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55566666777777777777776653 3344444444443333333322 245555554
No 245
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.48 E-value=8.8 Score=35.43 Aligned_cols=54 Identities=15% Similarity=0.086 Sum_probs=22.2
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007193 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (613)
Q Consensus 209 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 262 (613)
+.|++++|.+.|+.+....+.-+-...+.-.++.++-+.++++.|...+++...
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ 99 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR 99 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 344444444444444433211111223333334444444444444444444433
No 246
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.39 E-value=1.7 Score=40.94 Aligned_cols=77 Identities=17% Similarity=0.258 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHHHH
Q 007193 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS-----KNVKPDRVVFNAL 203 (613)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~l 203 (613)
++..++..+..+|+.+.+.+.++++.... +-+...|..+|.+|.+.|+...|++.|+++.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 44556666777777777777777777664 44677777777777777777777777777654 4677776666555
Q ss_pred HHH
Q 007193 204 ITA 206 (613)
Q Consensus 204 i~~ 206 (613)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
No 247
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.37 E-value=4.1 Score=38.80 Aligned_cols=117 Identities=12% Similarity=0.008 Sum_probs=72.4
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--HH--HHHHHHHccCCHH
Q 007193 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV--FN--ALITACGQSGAVD 214 (613)
Q Consensus 139 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~--~li~~~~~~g~~~ 214 (613)
-.|+..+|-..++++.+. ++.|..+++--=++|.-.|+.+.-...+++..-. ..||... |. ...-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 456677777777777654 3556667777677777778777777777777644 1233322 22 2233455677778
Q ss_pred HHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007193 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260 (613)
Q Consensus 215 ~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 260 (613)
+|++.-++..+.+ +-|.-.-.++...+-..|+..++.++..+-
T Consensus 193 dAEk~A~ralqiN---~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 193 DAEKQADRALQIN---RFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred hHHHHHHhhccCC---CcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 8877777765431 334444555666666777777777766543
No 248
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.99 E-value=12 Score=36.31 Aligned_cols=166 Identities=12% Similarity=0.044 Sum_probs=88.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-----CCCHH
Q 007193 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD---HITIGALMKACANAGQVDRAREVYKMIHKYNI-----KGTPE 270 (613)
Q Consensus 199 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~ 270 (613)
.|..+.+++-+..++.+++.+-..-... +|..|. -....++..++.-.+.++++.+.|+...+.-- .....
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~l-pgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGL-PGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcC-CCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 3444444554444455555444333221 122221 12233355566666677777777776544211 11234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHH----CCCC-
Q 007193 271 VYTIAINCCSQTGDWEFACSVYDDMTK----KGVIPDEVFLS-----ALIDFAGHAGKVEAAFEILQEAKN----QGIS- 336 (613)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~~~~~~-----~li~~~~~~g~~~~a~~~~~~~~~----~~~~- 336 (613)
++..|.+.|.+..++++|.-......+ .++.--..-|. .+.-++...|++..|.+.-++..+ .|-.
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 677777888888888777665554432 23321112222 223355566777777766665543 3322
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 337 VGIISYSSLMGACSNAKNWQKALELYEHM 365 (613)
Q Consensus 337 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (613)
........+.+.|...|+.+.|+.-|++.
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 12334556777888888888887777654
No 249
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.83 E-value=3.6 Score=33.36 Aligned_cols=90 Identities=17% Similarity=0.108 Sum_probs=60.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC-CCCCCH---HHHHHHHHHHhhcC
Q 007193 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL-GLCPNT---ITYSILLVACERKD 423 (613)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~---~t~~~ll~a~~~~g 423 (613)
+.+..|+++.|++.|.+....- +.....||.-..++.-.|+.++|++-+++..+. |-+ +. ..|.--...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 4566788888888887776542 345677888888888888888888888777663 211 22 22333334567788
Q ss_pred CHHHHHHHHHHHHHcC
Q 007193 424 DVEVGLMLLSQAKEDG 439 (613)
Q Consensus 424 ~~~~a~~~~~~m~~~g 439 (613)
+.+.|+.-|+...+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 8888888888777655
No 250
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.81 E-value=2.7 Score=39.04 Aligned_cols=60 Identities=15% Similarity=0.074 Sum_probs=23.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007193 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (613)
Q Consensus 203 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 262 (613)
|..++...|++++|..+|..+.+.....+--...+--|.....+.|+.++|..+|+++.+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344444444444444444444332111111122333333344444444444444444443
No 251
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=91.72 E-value=15 Score=36.63 Aligned_cols=80 Identities=10% Similarity=0.168 Sum_probs=50.9
Q ss_pred CchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCH---HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007193 58 DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL---STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134 (613)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li 134 (613)
|.+..-+..+++.+..++..++..+.++++..|-+ ..|..-+++-...+++.....+|.+.....+ +...|..-+
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~lYl 116 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWMLYL 116 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHHHHH
Confidence 55555556667777777777777777777765533 3566667666666777777777777766533 345555555
Q ss_pred HHHHH
Q 007193 135 TTCAK 139 (613)
Q Consensus 135 ~~~~~ 139 (613)
+.-.+
T Consensus 117 ~YIRr 121 (660)
T COG5107 117 EYIRR 121 (660)
T ss_pred HHHHh
Confidence 44333
No 252
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.55 E-value=6.9 Score=32.62 Aligned_cols=56 Identities=16% Similarity=0.126 Sum_probs=25.6
Q ss_pred HccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 007193 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263 (613)
Q Consensus 208 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 263 (613)
.+.|++++|.+.|+.+......-+-...+--.++.+|.+.+++++|...+++..+.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34455555555555554431111111233334455555555555555555555544
No 253
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.48 E-value=29 Score=39.30 Aligned_cols=112 Identities=14% Similarity=0.192 Sum_probs=67.1
Q ss_pred CCHHHHHHHHH----HHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-
Q 007193 302 PDEVFLSALID----FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST- 376 (613)
Q Consensus 302 p~~~~~~~li~----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~- 376 (613)
|+...+..+.. .+.....+++|.-.|...-+. .-.+.+|-.+|+|++|..+..++.. ..+...
T Consensus 933 ~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~ 1000 (1265)
T KOG1920|consen 933 PDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSE---GKDELVI 1000 (1265)
T ss_pred cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHH
Confidence 45544444443 344456667776666543221 2345677788888888888887763 233322
Q ss_pred -HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Q 007193 377 -MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433 (613)
Q Consensus 377 -~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 433 (613)
--.|+.-+...+++-+|-++..+... .|. .. +..+++...+++|.++..
T Consensus 1001 ~a~~L~s~L~e~~kh~eAa~il~e~~s---d~~-~a----v~ll~ka~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 1001 LAEELVSRLVEQRKHYEAAKILLEYLS---DPE-EA----VALLCKAKEWEEALRVAS 1050 (1265)
T ss_pred HHHHHHHHHHHcccchhHHHHHHHHhc---CHH-HH----HHHHhhHhHHHHHHHHHH
Confidence 25688888899999999888877654 222 12 223445555666665543
No 254
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.44 E-value=0.83 Score=29.28 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=10.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc
Q 007193 240 LMKACANAGQVDRAREVYKMIHKY 263 (613)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~~~ 263 (613)
+...|.+.|++++|.++|+++.+.
T Consensus 7 la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 7 LARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 255
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.04 E-value=2.9 Score=39.40 Aligned_cols=77 Identities=16% Similarity=0.201 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 007193 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-----KGVIPDEVFLSAL 310 (613)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~~l 310 (613)
++..++..+...|+.+.+...++.+.... +-+...|..+|.+|.+.|+...|+..|+.+.. .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 55666777777777777777777777765 56667777777777777777777777776654 4666665555444
Q ss_pred HHH
Q 007193 311 IDF 313 (613)
Q Consensus 311 i~~ 313 (613)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 433
No 256
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.01 E-value=4 Score=37.93 Aligned_cols=62 Identities=23% Similarity=0.205 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVI-P-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (613)
Q Consensus 272 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (613)
+..|...+...|++++|..+|..+.+.-.. | -...+--|.....+.|+.++|..+|+++.+.
T Consensus 181 ~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 181 YYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 334444444444444444444444432111 0 1123333334444444555555555544443
No 257
>PRK11906 transcriptional regulator; Provisional
Probab=90.90 E-value=20 Score=36.36 Aligned_cols=17 Identities=12% Similarity=0.124 Sum_probs=10.2
Q ss_pred hcCCHHHHHHHHHHHHH
Q 007193 37 RQGRISECIDLLEDMER 53 (613)
Q Consensus 37 ~~g~~~~A~~l~~~m~~ 53 (613)
+.|++-.-.++++.+-.
T Consensus 46 n~grVVSRdeLle~VWg 62 (458)
T PRK11906 46 SAGHVVLKDMIIESVWK 62 (458)
T ss_pred CCCceEcHHHHHHHhcC
Confidence 45666666666666643
No 258
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.79 E-value=21 Score=36.42 Aligned_cols=60 Identities=12% Similarity=0.125 Sum_probs=31.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007193 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (613)
Q Consensus 202 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 262 (613)
.+..++-+.|+.++|.+.+.+|.+.. +..........|+..+...+.+.++..++.+-.+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 34444555566666666666665431 1111233445556666666666666666665543
No 259
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=90.69 E-value=9.3 Score=36.96 Aligned_cols=166 Identities=14% Similarity=0.037 Sum_probs=94.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CcCHHh
Q 007193 271 VYTIAINCCSQTGDWEFACSVYDDMTK-KGVIP---DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI-----SVGIIS 341 (613)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~ 341 (613)
.|..+..++-+..++.+++.+-..-.. .|..| ......++-.++...+.++++++.|+...+... .....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 444455555555555555555544332 12222 112233455566666777888888877655311 123456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHHHH-----HHHHHHHcCCChhHHHHHHHHHHh----CCCCCC
Q 007193 342 YSSLMGACSNAKNWQKALELYEHMKS----IKLKPTVSTMN-----ALITALCDGDQLPKTMEVLSDMKS----LGLCPN 408 (613)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~~~~-----~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~ 408 (613)
+..|-..|.+..++++|.-+.....+ .++..-..-|. .|.-++...|+..+|.+.-++..+ .|-+|.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 77888888888888887766655432 22211112222 244566778888888777776433 332221
Q ss_pred -HHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 007193 409 -TITYSILLVACERKDDVEVGLMLLSQAK 436 (613)
Q Consensus 409 -~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 436 (613)
......+.+.|...|+.+.|..-+++..
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2334456677888899888887777654
No 260
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=90.60 E-value=20 Score=35.89 Aligned_cols=146 Identities=10% Similarity=0.133 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHH
Q 007193 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQG-ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM-NALI 381 (613)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~li 381 (613)
...|...+.+-.+..-++.|..+|-+..+.+ ..+++.++++++..++ .|+..-|..+|+-=... -||...| +..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4667778888888888999999999999988 5678889999998776 67778899998854332 3554443 4566
Q ss_pred HHHHcCCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007193 382 TALCDGDQLPKTMEVLSDMKSLGLCPN--TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (613)
Q Consensus 382 ~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 455 (613)
.-+..-++-+.|..+|+...+. +..+ ...|..+|.--+.-|++..+..+-++|.. +-|...+-....+.|+
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence 7777888999999999966543 3334 56788899888899999998888888876 3455444444444443
No 261
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.47 E-value=17 Score=34.83 Aligned_cols=62 Identities=11% Similarity=0.106 Sum_probs=32.1
Q ss_pred HHHHHHHHHHccCCHH---HHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 007193 199 VFNALITACGQSGAVD---RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263 (613)
Q Consensus 199 ~~~~li~~~~~~g~~~---~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 263 (613)
++..++.+|...+..+ +|..+++.+..+ .+-+| .++-.-+..+.+.++.+.+.+++.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~--~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKP--EVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCc--HHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 4555666666655533 445555555433 12222 23333445555566666777777666554
No 262
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.38 E-value=8.7 Score=32.75 Aligned_cols=50 Identities=12% Similarity=0.017 Sum_probs=29.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC
Q 007193 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88 (613)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 88 (613)
+.++.+++..+++.+.--. |........-...+...|++.+|.++|+.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLR--P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLR--PEFPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred ccCChHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 5667777777777666544 4444444444445555666666666666654
No 263
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.07 E-value=1.2 Score=28.53 Aligned_cols=27 Identities=15% Similarity=0.094 Sum_probs=12.8
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHc
Q 007193 95 FNMLMSVCASSKDSEGAFQVLRLVQEA 121 (613)
Q Consensus 95 ~~~li~~~~~~~~~~~A~~~~~~m~~~ 121 (613)
|..+...|.+.|++++|.++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444444455555555555444443
No 264
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.98 E-value=12 Score=32.35 Aligned_cols=130 Identities=10% Similarity=0.153 Sum_probs=64.4
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHh
Q 007193 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK--NWQKALELYEHMKS 367 (613)
Q Consensus 290 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~ 367 (613)
+.++.+.+.++.|+...+..+++.+.+.|++.... ++.+.++-+|.......+-.+.... -..-|.+++.++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~- 89 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG- 89 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh-
Confidence 34445555666666667777777777766644433 3333444444443333332222111 1233334443333
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 007193 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435 (613)
Q Consensus 368 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 435 (613)
..+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..+++-.
T Consensus 90 -------~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 90 -------TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred -------hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 13455666777788888888777664321 1122233455555555554444444433
No 265
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.86 E-value=7.4 Score=34.25 Aligned_cols=96 Identities=10% Similarity=0.020 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHH
Q 007193 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN--VHTYGALIDGCAKAGQVAKAFGAYGIMRSK---NVKPDRVVFNAL 203 (613)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~l 203 (613)
.+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+|+.....+++..+.....+.... |-.++...--..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 455566666666666666666666655432222 233455566666666666666665555432 111111111111
Q ss_pred HH--HHHccCCHHHHHHHHHHHh
Q 007193 204 IT--ACGQSGAVDRAFDVLAEMN 224 (613)
Q Consensus 204 i~--~~~~~g~~~~a~~~~~~m~ 224 (613)
.. .+...+++..|-+.|-...
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccC
Confidence 11 1233466777776665554
No 266
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=89.81 E-value=9.6 Score=31.03 Aligned_cols=90 Identities=9% Similarity=0.048 Sum_probs=43.2
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCH
Q 007193 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH---TYGALIDGCAKAGQV 178 (613)
Q Consensus 102 ~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~---~~~~li~~~~~~g~~ 178 (613)
++..|+++.|++.|......- +.....||.-..++.-.|+.++|++-+++..+..-..+.. .|..-...|-..|+-
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 445555666666555555432 3345555555555555566666555555554432111111 122222234445555
Q ss_pred HHHHHHHHHHHhCC
Q 007193 179 AKAFGAYGIMRSKN 192 (613)
Q Consensus 179 ~~A~~~~~~m~~~g 192 (613)
+.|..-|+..-+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 55555555554443
No 267
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.59 E-value=35 Score=37.14 Aligned_cols=138 Identities=14% Similarity=0.111 Sum_probs=71.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChH
Q 007193 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSE 109 (613)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~ 109 (613)
+.|.+.|++++|.+-+-+-.. .+.+...+ ..+.......+-..+++.+. -.+...-..|+..|.+.++.+
T Consensus 376 d~Ly~Kgdf~~A~~qYI~tI~--~le~s~Vi-----~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~ 448 (933)
T KOG2114|consen 376 DYLYGKGDFDEATDQYIETIG--FLEPSEVI-----KKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVE 448 (933)
T ss_pred HHHHhcCCHHHHHHHHHHHcc--cCChHHHH-----HHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchH
Confidence 345589999999888876543 32333222 22223333444444444332 223444566778888888877
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (613)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (613)
.-.+..+... .|.. .+-....+..+.+.+-.++|.-+-.... .+......++ -..+++++|++.+..+
T Consensus 449 kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~-----~he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 449 KLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFK-----KHEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhc-----cCHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 6665554433 2211 1113345555555565666655544432 1333333333 2455666666666655
No 268
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=89.56 E-value=42 Score=38.08 Aligned_cols=113 Identities=13% Similarity=0.052 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHH
Q 007193 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN----ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240 (613)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~----~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~l 240 (613)
|.-.++.--+.|.+.+|+.++ .|+...+. +-..-+.....+++|--.|+..-+ ..-.
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-----------lekA 971 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK-----------LEKA 971 (1265)
T ss_pred cHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc-----------HHHH
Confidence 333344444555566665554 23333322 222333344555555555544321 1223
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007193 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (613)
Q Consensus 241 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 297 (613)
+.+|-.+|++.+|..+..++....- --..+-..|+.-+...+++-+|-++..+-..
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~~d-e~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEGKD-ELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCCHH-HHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 4555566666666665554432110 0001114455555556666555555555443
No 269
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=89.37 E-value=16 Score=32.97 Aligned_cols=200 Identities=17% Similarity=0.075 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 007193 235 ITIGALMKACANAGQVDRAREVYKMIHKY-NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID- 312 (613)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~- 312 (613)
.........+...+.+..+...+...... ........+......+...+.+..+.+.+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 44444555555566666665555555431 1233334455555555556666666666666655433321 11111222
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC--CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh
Q 007193 313 FAGHAGKVEAAFEILQEAKNQGI--SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390 (613)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 390 (613)
.+...|+++.|...+........ ......+......+...++.+.+...+..............+..+...+...+..
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 56666777777777766644221 1223333344444566777777777777776543111355666677777777777
Q ss_pred hHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 391 PKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 391 ~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
++|...+...... .|+ ...+..+...+...+..+.+...+.+..+
T Consensus 219 ~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 219 EEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7887777777663 343 33344444444466667777777777665
No 270
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.00 E-value=17 Score=32.66 Aligned_cols=179 Identities=16% Similarity=0.104 Sum_probs=106.3
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007193 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326 (613)
Q Consensus 247 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 326 (613)
.|-+..|+-=|.+..... +.-+.+||-+.-.+...|+++.|.+.|+...+.++.-+-...|.-|.. .-.|++..|.+=
T Consensus 78 lGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~-YY~gR~~LAq~d 155 (297)
T COG4785 78 LGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL-YYGGRYKLAQDD 155 (297)
T ss_pred hhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee-eecCchHhhHHH
Confidence 344455555555554433 334678999998899999999999999999887655443344433332 345888888877
Q ss_pred HHHHHHCCCCcCH--HhHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 007193 327 LQEAKNQGISVGI--ISYSSLMGACSNAKNWQKALELY-EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (613)
Q Consensus 327 ~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~-~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 403 (613)
+...-+.. +.|+ ..|--++ ...-++.+|..-+ ++.. +.|..-|..-|-.|.-..-.++ .+++++...
T Consensus 156 ~~~fYQ~D-~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~----~~d~e~WG~~iV~~yLgkiS~e--~l~~~~~a~ 225 (297)
T COG4785 156 LLAFYQDD-PNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE----KSDKEQWGWNIVEFYLGKISEE--TLMERLKAD 225 (297)
T ss_pred HHHHHhcC-CCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH----hccHhhhhHHHHHHHHhhccHH--HHHHHHHhh
Confidence 77766654 2222 2222222 2334556665433 3333 3565666665555543222222 234444332
Q ss_pred CCCCC-------HHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 007193 404 GLCPN-------TITYSILLVACERKDDVEVGLMLLSQAKED 438 (613)
Q Consensus 404 g~~p~-------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (613)
-.-+ ..||--+..-+...|++++|..+|+-.+..
T Consensus 226 -a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 226 -ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred -ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 1211 346667778888999999999999887754
No 271
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=88.96 E-value=29 Score=35.42 Aligned_cols=60 Identities=12% Similarity=0.142 Sum_probs=36.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007193 308 SALIDFAGHAGKVEAAFEILQEAKNQGIS-VGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (613)
Q Consensus 308 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (613)
..+..++-+.|+.++|.+.+++|.+.... .+..+...|+.++...+.+.++..++.+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 33444555667777777777777654311 2333555667777777777777777666543
No 272
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.76 E-value=4 Score=42.10 Aligned_cols=159 Identities=13% Similarity=0.136 Sum_probs=86.3
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCC
Q 007193 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSK 106 (613)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 106 (613)
..+.-|.+++-.|+++.|-.++..+++. .+..+..+..++|-.++|+.+- +|+.. -.....+.|
T Consensus 588 l~vleyqt~vmrrd~~~a~~vLp~I~k~--------~rt~va~Fle~~g~~e~AL~~s-----~D~d~---rFelal~lg 651 (794)
T KOG0276|consen 588 LEVLEYQTLVLRRDLEVADGVLPTIPKE--------IRTKVAHFLESQGMKEQALELS-----TDPDQ---RFELALKLG 651 (794)
T ss_pred hHHHHHHHHhhhccccccccccccCchh--------hhhhHHhHhhhccchHhhhhcC-----CChhh---hhhhhhhcC
Confidence 3444555666677777776665554422 2233444555666666665431 11111 122334556
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007193 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186 (613)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 186 (613)
+++.|.++..+.. +..-|..|-++..+.+++..|.+-|..... |..|+-.+...|+.+....+-.
T Consensus 652 rl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~ 716 (794)
T KOG0276|consen 652 RLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLAS 716 (794)
T ss_pred cHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHH
Confidence 6666666654432 345567777777777777777776655442 4455666666666655555545
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 007193 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222 (613)
Q Consensus 187 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 222 (613)
...+.|. .|.-.-+|...|+++++.+++..
T Consensus 717 ~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 717 LAKKQGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHhhcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 5554442 22233345556677766666654
No 273
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.54 E-value=24 Score=33.99 Aligned_cols=129 Identities=18% Similarity=0.273 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHHHHCCC---CcCHHhHHHHHHHHHhcCC--
Q 007193 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGH--A----GKVEAAFEILQEAKNQGI---SVGIISYSSLMGACSNAKN-- 354 (613)
Q Consensus 286 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~----g~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~-- 354 (613)
++.+.+++.|.+.|+.-+..+|-+....... . .....|..+|+.|++... .++...+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4555666777777777666555543332222 1 124567788888877642 2344455555433 2333
Q ss_pred --HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCC---hhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007193 355 --WQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQ---LPKTMEVLSDMKSLGLCPNTITYSILL 416 (613)
Q Consensus 355 --~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~~~t~~~ll 416 (613)
.+.+..+|+.+.+.|+.++ ..-+.+-|-++..... ..++.++++.+.+.|+++....|..+.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 3456666777777666554 2233333333332222 346777788888888877776666544
No 274
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.17 E-value=42 Score=36.25 Aligned_cols=151 Identities=10% Similarity=0.093 Sum_probs=86.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCh
Q 007193 31 SYNRLIRQGRISECIDLLEDMERKGLLDM--DKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDS 108 (613)
Q Consensus 31 ~~~~l~~~g~~~~A~~l~~~m~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~ 108 (613)
.++-|++.+.+++|+++-+.....- +. ..-....++.-+...|++++|-...-.|-..+..-|.--+..++..++.
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~~--~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGNE--ERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQL 439 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCCc--cccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhcccccc
Confidence 3455889999999999887765432 31 2222333333345567888888888888778888888777777777665
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH------------------HHHCCCCCCHHHHHHHHH
Q 007193 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE------------------MVNAGIEPNVHTYGALID 170 (613)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~------------------m~~~g~~~~~~~~~~li~ 170 (613)
.... ..+.......+...|..++..+.. .+...-.++..+ ..+. ..+...-..|+.
T Consensus 440 ~~Ia---~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se~~~L~e~La~ 513 (846)
T KOG2066|consen 440 TDIA---PYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN--SESTALLEVLAH 513 (846)
T ss_pred chhh---ccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh--ccchhHHHHHHH
Confidence 4332 223322222345667766666655 222211111111 0111 112222334667
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 007193 171 GCAKAGQVAKAFGAYGIMR 189 (613)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~ 189 (613)
.|...++++.|+.++-..+
T Consensus 514 LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 514 LYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHccChHHHHHHHHhcc
Confidence 7777777777777776665
No 275
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.60 E-value=23 Score=32.52 Aligned_cols=207 Identities=14% Similarity=0.089 Sum_probs=96.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007193 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (613)
Q Consensus 94 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (613)
.|.-...+|....++++|...+.+..+. .+.+...|. -....+.|.-+.+++.+. +--+..|+--..+|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 3444445566677777777766655531 122221111 112234455555555432 112334555666777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC---CCCCCCHHHHHHHHHHHHhcCCh
Q 007193 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV---HPVDPDHITIGALMKACANAGQV 250 (613)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~~~ll~~~~~~g~~ 250 (613)
.+|.++.|-..+++.-+. ....++++|++++.+...-. ....--...+...-..+.+...+
T Consensus 103 E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 778777776666654321 11222333333333322100 00001112233334455666666
Q ss_pred HHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHH
Q 007193 251 DRAREVYKMIHKY----NIKGT-PEVYTIAINCCSQTGDWEFACSVYDDMTKKG---VIPDEVFLSALIDFAGHAGKVEA 322 (613)
Q Consensus 251 ~~A~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~~~li~~~~~~g~~~~ 322 (613)
++|-..|.+-... .--++ -..|-+.|-.|.-..++..|.+.++.--+.+ -.-+..+...|+.+|- .|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHH
Confidence 6665554332111 10111 1234445555566667777777777643321 1124556666666653 456665
Q ss_pred HHHHH
Q 007193 323 AFEIL 327 (613)
Q Consensus 323 a~~~~ 327 (613)
+..++
T Consensus 246 ~~kvl 250 (308)
T KOG1585|consen 246 IKKVL 250 (308)
T ss_pred HHHHH
Confidence 55544
No 276
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=87.50 E-value=6.5 Score=30.03 Aligned_cols=63 Identities=19% Similarity=0.266 Sum_probs=50.1
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHH
Q 007193 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK-EDGVIPNLVMFKCIIGMC 454 (613)
Q Consensus 390 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~-~~g~~p~~~~~~~li~~~ 454 (613)
.-++.+-++.+....+.|++....+.+.||.+..++..|.++++-+. +.|. +...|..++.-.
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lqei 86 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQEI 86 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHHHH
Confidence 33566667777777899999999999999999999999999999877 4443 555788777643
No 277
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.49 E-value=45 Score=35.85 Aligned_cols=302 Identities=13% Similarity=0.092 Sum_probs=170.7
Q ss_pred HcCCCCCHHHHH-----HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhCC
Q 007193 120 EAGLKADCKLYT-----TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV--AKAFGAYGIMRSKN 192 (613)
Q Consensus 120 ~~g~~~~~~~~~-----~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g 192 (613)
..|++.+..-|. .+|+-+...+.+..|+++-..+...-.. +..+|.....-+.+..+. +++++..++=.+..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 346666655554 4577777888899999888776522111 155666666666665332 23333333322221
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC------
Q 007193 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD--PDHITIGALMKACANAGQVDRAREVYKMIHKYN------ 264 (613)
Q Consensus 193 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~------ 264 (613)
. .+.++|..+.+-....|+.+-|..+++.=......++ .+..-+...+.-+...|+.+....++-++.+.-
T Consensus 504 ~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~ 582 (829)
T KOG2280|consen 504 L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLF 582 (829)
T ss_pred C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 2 3456788888777788999999888765322211110 112234455666677788777777766554431
Q ss_pred -----CCCCHHHHHHHHH--------HHHhcCCHHHHHHHHH--HHH----HCCCCCCHHHHHHHHHHHHhcCCHH----
Q 007193 265 -----IKGTPEVYTIAIN--------CCSQTGDWEFACSVYD--DMT----KKGVIPDEVFLSALIDFAGHAGKVE---- 321 (613)
Q Consensus 265 -----~~~~~~~~~~li~--------~~~~~g~~~~a~~~~~--~m~----~~g~~p~~~~~~~li~~~~~~g~~~---- 321 (613)
.+.....|.-++. .+.+.++-.++...|. ... ..+..|+ ......+|++.....
T Consensus 583 ~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~k 659 (829)
T KOG2280|consen 583 MTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAK 659 (829)
T ss_pred HHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHH
Confidence 1111122222222 1111122122222111 100 1122333 233334444443311
Q ss_pred ------HHHHHHHHHHHC-CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 007193 322 ------AAFEILQEAKNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394 (613)
Q Consensus 322 ------~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 394 (613)
+-..+.+.+..+ |..-...+.+--+.-+...|+..+|.++-.+.+ -||...|-.-+.+++..+++++-.
T Consensus 660 a~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLe 735 (829)
T KOG2280|consen 660 ALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELE 735 (829)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHH
Confidence 112222222222 323344456666667778899999999988877 589999988999999999998866
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 007193 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436 (613)
Q Consensus 395 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 436 (613)
++-+.+. .+.-|.-+..+|.+.|+.++|.+++.+..
T Consensus 736 kfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 736 KFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred HHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 6654432 36678888899999999999999886654
No 278
>PRK09687 putative lyase; Provisional
Probab=86.65 E-value=31 Score=33.06 Aligned_cols=238 Identities=14% Similarity=0.062 Sum_probs=121.2
Q ss_pred HhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh----hHHHHHHHHHHHCCCCC
Q 007193 85 KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----DAMFEVFHEMVNAGIEP 160 (613)
Q Consensus 85 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~g~~~ 160 (613)
+.+..+|.......+.++...|.. .+...+..+.. .+|...-...+.++++.|+. +++...+..+... .+
T Consensus 30 ~~L~d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~ 103 (280)
T PRK09687 30 RLLDDHNSLKRISSIRVLQLRGGQ-DVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DK 103 (280)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CC
Confidence 334456666666666677666643 33333333332 34566666667777777763 3566666655333 45
Q ss_pred CHHHHHHHHHHHHhcCCH-----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHH
Q 007193 161 NVHTYGALIDGCAKAGQV-----AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235 (613)
Q Consensus 161 ~~~~~~~li~~~~~~g~~-----~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 235 (613)
+..+-...+.++...+.. ..+...+..... .++..+-...+.++++.++ +++...+-.+.. .+|..
T Consensus 104 d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~-----d~~~~ 174 (280)
T PRK09687 104 SACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK-----DPNGD 174 (280)
T ss_pred CHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc-----CCCHH
Confidence 666666666666554321 223333333322 2244444455666666665 344555544443 23434
Q ss_pred HHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007193 236 TIGALMKACANAG-QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (613)
Q Consensus 236 ~~~~ll~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 314 (613)
+-...+.++.+.+ ....+...+..+.. .++..+-..-+.++.+.++. .|+..+-...+.+. .....+.++
T Consensus 175 VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~-----~~~~a~~AL 245 (280)
T PRK09687 175 VRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT-----VGDLIIEAA 245 (280)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc-----hHHHHHHHH
Confidence 4444444555442 12344444444442 33445666666666666663 45555555544422 123455666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHH
Q 007193 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (613)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (613)
...|.. +|...+..+.+.. +|..+-...+.++
T Consensus 246 g~ig~~-~a~p~L~~l~~~~--~d~~v~~~a~~a~ 277 (280)
T PRK09687 246 GELGDK-TLLPVLDTLLYKF--DDNEIITKAIDKL 277 (280)
T ss_pred HhcCCH-hHHHHHHHHHhhC--CChhHHHHHHHHH
Confidence 666664 4666666655532 3544444444433
No 279
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=86.53 E-value=1.6 Score=26.42 Aligned_cols=23 Identities=22% Similarity=0.148 Sum_probs=12.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 007193 165 YGALIDGCAKAGQVAKAFGAYGI 187 (613)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~ 187 (613)
|+.|...|.+.|++++|+.+|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555556666666666666555
No 280
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.36 E-value=20 Score=30.63 Aligned_cols=18 Identities=17% Similarity=0.329 Sum_probs=9.4
Q ss_pred HHcCChhHHHHHHHHHHH
Q 007193 138 AKSGKVDAMFEVFHEMVN 155 (613)
Q Consensus 138 ~~~g~~~~a~~~~~~m~~ 155 (613)
...|++.+|..+|+++..
T Consensus 55 i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 55 IVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHhCCHHHHHHHHHHHhc
Confidence 345555555555555443
No 281
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=85.97 E-value=22 Score=30.76 Aligned_cols=134 Identities=14% Similarity=0.234 Sum_probs=68.6
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007193 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (613)
Q Consensus 113 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 192 (613)
+.++.+.+.+++|+...+..+++.+.+.|++..-.+ +.+.++-+|.......+-.+. +....+.++=-+|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 444555566777777777777777777776554433 334444445444443332222 2223333333333322
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007193 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (613)
Q Consensus 193 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 262 (613)
=...+..++..+...|++-+|.++....... +......++.+..+.++...=..+|+-..+
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~------~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV------DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc------ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0024555666777777777777777654211 111223455555555555544444444444
No 282
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=85.71 E-value=9.8 Score=33.46 Aligned_cols=14 Identities=21% Similarity=0.332 Sum_probs=7.5
Q ss_pred cCCHHHHHHHHHHH
Q 007193 282 TGDWEFACSVYDDM 295 (613)
Q Consensus 282 ~g~~~~a~~~~~~m 295 (613)
.+++..|-+.|-+.
T Consensus 126 ~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 126 QRDFKEAAELFLDS 139 (177)
T ss_pred hchHHHHHHHHHcc
Confidence 45555555555444
No 283
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=85.61 E-value=56 Score=35.10 Aligned_cols=147 Identities=10% Similarity=0.097 Sum_probs=34.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007193 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368 (613)
Q Consensus 289 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (613)
....+.+...-+..+.....-++..|.+.|-.+.|.++.+.+-..-. ...-|..-+..+.++|+......+-+.+.+
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~- 466 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLE- 466 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHH-
Confidence 34444444433334666677788888888888888888876654421 123455555566666666555544444432
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHH-HH--HhhcCCHHHHHHHHHHHHHcCCCCCHH
Q 007193 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL-VA--CERKDDVEVGLMLLSQAKEDGVIPNLV 445 (613)
Q Consensus 369 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a--~~~~g~~~~a~~~~~~m~~~g~~p~~~ 445 (613)
.|+..|... ..++++.+....+..+.-++-..+ .- ..+.|+..+|.+.+-.+.+.++.|...
T Consensus 467 --------------~~~~~~~~~-~~~ll~~i~~~~~~~~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f 531 (566)
T PF07575_consen 467 --------------EYCNNGEPL-DDDLLDNIGSPMLLSQRLSFLAKYREFYELYDEGDFREAASLLVSLLKSPIAPKSF 531 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------HHhcCCCcc-cHHHHHHhcchhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCCCcHHH
Confidence 233333211 111111111100001111111111 11 123477777777777777777777766
Q ss_pred HHHHHHHH
Q 007193 446 MFKCIIGM 453 (613)
Q Consensus 446 ~~~~li~~ 453 (613)
...-|.++
T Consensus 532 ~~~LL~d~ 539 (566)
T PF07575_consen 532 WPLLLCDA 539 (566)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 55555543
No 284
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=85.56 E-value=1.8 Score=26.26 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=10.2
Q ss_pred HHHHHHHHHcCCChhHHHHHHHH
Q 007193 377 MNALITALCDGDQLPKTMEVLSD 399 (613)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~l~~~ 399 (613)
|+.|...|.+.|++++|++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444444444444444444444
No 285
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.20 E-value=29 Score=31.66 Aligned_cols=17 Identities=12% Similarity=0.235 Sum_probs=7.7
Q ss_pred cCCHHHHHHHHHHHHHC
Q 007193 317 AGKVEAAFEILQEAKNQ 333 (613)
Q Consensus 317 ~g~~~~a~~~~~~~~~~ 333 (613)
.+++.+|..+|+++...
T Consensus 167 leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 167 LEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 286
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=84.79 E-value=1.6 Score=26.08 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=13.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHH
Q 007193 266 KGTPEVYTIAINCCSQTGDWEFAC 289 (613)
Q Consensus 266 ~~~~~~~~~li~~~~~~g~~~~a~ 289 (613)
|.+..+|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 444555555555555555555553
No 287
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=84.78 E-value=33 Score=31.79 Aligned_cols=180 Identities=8% Similarity=-0.012 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007193 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKG---TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310 (613)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 310 (613)
...|+.-+ .-.+.|++++|.+.|+.+.... +. ...+--.++-++.+.+++++|+..+++....-+.....-|..-
T Consensus 35 ~~LY~~g~-~~L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 35 SELYNEGL-TELQKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred HHHHHHHH-HHHhcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 34444443 3457789999999999988653 22 3445566777888999999999999988776443333444444
Q ss_pred HHHHHhc-------CCHH---HHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-H-H
Q 007193 311 IDFAGHA-------GKVE---AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST-M-N 378 (613)
Q Consensus 311 i~~~~~~-------g~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~-~ 378 (613)
|.+.+.- .+.. .|..-|+.+++. |=...-...|......+. |... + .
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r---------------yPnS~Ya~dA~~~i~~~~------d~LA~~Em 171 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR---------------YPNSRYAPDAKARIVKLN------DALAGHEM 171 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHH---------------CCCCcchhhHHHHHHHHH------HHHHHHHH
Confidence 4444421 1222 223333333332 111111122222221111 1001 1 1
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNT---ITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 379 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
.+..-|.+.|.+-.|..-+++|.+. .+-+. ..+-.+..+|...|..++|.+.-+-+..
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 3445677888888888888888775 22222 3345555777777777777766554443
No 288
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.15 E-value=16 Score=34.77 Aligned_cols=99 Identities=11% Similarity=0.089 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007193 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQG---ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379 (613)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 379 (613)
...+...++..-....+++.+...+-.+.... ..++.. -.+.++.+.+ -+.++++.++..=.+.|+-||..+++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHHc-cChHHHHHHHhCcchhccccchhhHHH
Confidence 44445555555455566666666665554431 111111 1222332222 245566666666666777777777777
Q ss_pred HHHHHHcCCChhHHHHHHHHHHhC
Q 007193 380 LITALCDGDQLPKTMEVLSDMKSL 403 (613)
Q Consensus 380 li~~~~~~g~~~~A~~l~~~m~~~ 403 (613)
+|+.+.+.+++.+|..+...|...
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHH
Confidence 777777777777777776665543
No 289
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=84.02 E-value=32 Score=30.93 Aligned_cols=202 Identities=17% Similarity=0.134 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 007193 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277 (613)
Q Consensus 198 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 277 (613)
..+......+...+....+...+...... .........+......+...+.+..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALEL-ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 34444444555555555555554444320 0112233344444444555555555555555555433222 111222222
Q ss_pred -HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCC
Q 007193 278 -CCSQTGDWEFACSVYDDMTKKGV--IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354 (613)
Q Consensus 278 -~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 354 (613)
.+...|+++.|...+.+...... ......+......+...++.+.+...+..............+..+...+...+.
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 56666666666666666644211 112233333333355666777777777776665311135666677777777777
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 007193 355 WQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (613)
Q Consensus 355 ~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 403 (613)
.+.|...+....... |+ ...+..+...+...+..+++...+.+....
T Consensus 218 ~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 788887777776542 33 334444444444666678888777776653
No 290
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=83.16 E-value=20 Score=27.87 Aligned_cols=61 Identities=20% Similarity=0.286 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHH
Q 007193 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK-EDGVIPNLVMFKCIIGMC 454 (613)
Q Consensus 392 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~-~~g~~p~~~~~~~li~~~ 454 (613)
+..+-++.+....+.|++....+.|.||.+..++..|.++++-+. +.|-. ...|..++.-+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lqEl 89 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQEL 89 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHHHH
Confidence 556666777777899999999999999999999999999999887 44433 33788887654
No 291
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=83.14 E-value=2.7 Score=24.81 Aligned_cols=26 Identities=12% Similarity=0.017 Sum_probs=11.1
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHh
Q 007193 377 MNALITALCDGDQLPKTMEVLSDMKS 402 (613)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (613)
|..+...|...|++++|+..|++..+
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 34444444444444444444444433
No 292
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.76 E-value=28 Score=29.32 Aligned_cols=51 Identities=12% Similarity=-0.014 Sum_probs=35.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCC
Q 007193 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN 89 (613)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 89 (613)
..++++++..+++.|.--. |........-...+...|++.+|.++|..+..
T Consensus 22 ~~~d~~D~e~lLdALrvLr--P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLR--PNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred hcCCHHHHHHHHHHHHHhC--CCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 5778888888888877654 55555555555566677788888888887764
No 293
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.52 E-value=20 Score=34.15 Aligned_cols=105 Identities=11% Similarity=0.090 Sum_probs=55.1
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHH
Q 007193 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH-PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270 (613)
Q Consensus 192 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 270 (613)
|.+....+...++..-....+++.+...+-.++.... ...|+. +-.+++..+. .-++++++.++..=.+.|+-||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 3344444444444444445556666666555543210 001111 1111222222 224556666666666677777777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 271 VYTIAINCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (613)
+++.+|+.+.+.+++.+|.++.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 7777777777777777776666665543
No 294
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.22 E-value=75 Score=33.97 Aligned_cols=183 Identities=15% Similarity=0.095 Sum_probs=98.4
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHH--HH-HHHcCChhHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcC-
Q 007193 108 SEGAFQVLRLVQEAGLKADCKLYTTLI--TT-CAKSGKVDAMFEVFHEMVN-------AGIEPNVHTYGALIDGCAKAG- 176 (613)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li--~~-~~~~g~~~~a~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~g- 176 (613)
...|.+.++...+.|. .........+ .+ ++...+.+.|...|....+ .| +.....-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 4568888888777662 1122222222 22 3456688888888888765 44 2334555666666532
Q ss_pred ----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHH--hcCC
Q 007193 177 ----QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ-SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA--NAGQ 249 (613)
Q Consensus 177 ----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~--~~g~ 249 (613)
+.+.|+.+|.+.-+.| .|+....-..+..... ..+...|.++|......+ . ++..-+.+++.... ...+
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~-~~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--H-ILAIYRLALCYELGLGVERN 379 (552)
T ss_pred CccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--C-hHHHHHHHHHHHhCCCcCCC
Confidence 5566888887777776 4555444333333333 245677888887776542 1 22222222211111 2235
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007193 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300 (613)
Q Consensus 250 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 300 (613)
...|..++.+..++| .|....-...+..+.. +.++.+.-.+..+.+.|.
T Consensus 380 ~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 677777777777777 3322222222333333 666666666666655544
No 295
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=81.74 E-value=50 Score=31.59 Aligned_cols=160 Identities=14% Similarity=0.110 Sum_probs=86.8
Q ss_pred HcCCChHHHHHHHHHHHHcC--CCCCH------HHHHHHHHHHHHcCChhHHHHHHHHHHHC--------CCCCCH----
Q 007193 103 ASSKDSEGAFQVLRLVQEAG--LKADC------KLYTTLITTCAKSGKVDAMFEVFHEMVNA--------GIEPNV---- 162 (613)
Q Consensus 103 ~~~~~~~~A~~~~~~m~~~g--~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------g~~~~~---- 162 (613)
.+.|+++.|..++.+....- ..|+. ..|+.-...+.+..+++.|...+++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 34566666766666665422 12221 23444444443333777776666554322 122332
Q ss_pred -HHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHH
Q 007193 163 -HTYGALIDGCAKAGQVA---KAFGAYGIMRSKNVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237 (613)
Q Consensus 163 -~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 237 (613)
.+...++.+|...+..+ +|..+++.+... .|+ ..++..-+..+.+.++.+++.+.+.+|.... .-....+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e--~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~---~~~e~~~ 158 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESE--YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV---DHSESNF 158 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc---ccccchH
Confidence 45667777887777654 556666666544 233 4455555677777899999999999998752 2122344
Q ss_pred HHHHHHH---HhcCChHHHHHHHHHHHhcCCCCC
Q 007193 238 GALMKAC---ANAGQVDRAREVYKMIHKYNIKGT 268 (613)
Q Consensus 238 ~~ll~~~---~~~g~~~~A~~~~~~~~~~~~~~~ 268 (613)
..++..+ .... ...|...++.+....+.|.
T Consensus 159 ~~~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 159 DSILHHIKQLAEKS-PELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHHHHHHHhhC-cHHHHHHHHHHHHHHhCCC
Confidence 4444433 3333 3445555555544434443
No 296
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=81.58 E-value=49 Score=31.38 Aligned_cols=116 Identities=13% Similarity=0.130 Sum_probs=64.8
Q ss_pred ChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007193 107 DSEGAFQVLRLVQE-AGLKADCKLYTTLITTCAKSG--KVDAMFEVFHEMVN-AGIEPNVHTYGALIDGCAKAGQVAKAF 182 (613)
Q Consensus 107 ~~~~A~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~~~A~ 182 (613)
.+.+|+.+|+.... ..+--|..+...+++...... ....-.++.+-+.. .|-.++..+-..++..+++.+++.+-+
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34555555552221 123345555555555554411 12222233333332 223566666777777777777777777
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 007193 183 GAYGIMRSK-NVKPDRVVFNALITACGQSGAVDRAFDVLAE 222 (613)
Q Consensus 183 ~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 222 (613)
++++..... +..-|...|..+|+.-...|+..-..++.++
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 777766544 4455667777777777777777666666543
No 297
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.31 E-value=18 Score=32.22 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=9.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHH
Q 007193 268 TPEVYTIAINCCSQTGDWEFA 288 (613)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~a 288 (613)
|+..+.+|++.|.+.|+++.|
T Consensus 177 n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CHHHHHHHHHHHHHhcchhhh
Confidence 344444444444444444443
No 298
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.10 E-value=47 Score=30.89 Aligned_cols=153 Identities=12% Similarity=0.067 Sum_probs=89.2
Q ss_pred hcCCHHHHHHHHHHHHHcCC--CCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---------CCCHHHHHHHHHHHHcC
Q 007193 37 RQGRISECIDLLEDMERKGL--LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---------NPTLSTFNMLMSVCASS 105 (613)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---------~~~~~~~~~li~~~~~~ 105 (613)
+...+++|+.-|+++.+... -.|.--..--++......+++++....|.++. .-+..+.|++++..+.+
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 66799999999999886431 13443333344555566677777777776643 33556777777777666
Q ss_pred CChHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC----C-------CCHHHHHHHH
Q 007193 106 KDSEGAFQVLRLVQEA-----GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI----E-------PNVHTYGALI 169 (613)
Q Consensus 106 ~~~~~A~~~~~~m~~~-----g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~----~-------~~~~~~~~li 169 (613)
.+.+.....++.-.+. +-..=-.|-+.|-..|...+.+.+..+++.++.+..- + .-...|..=|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 6665555544432211 0011112334566666677777777777766653210 1 1234566666
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 007193 170 DGCAKAGQVAKAFGAYGIMR 189 (613)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~ 189 (613)
.+|....+-.....+|++..
T Consensus 199 QmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred hhhhhhcccHHHHHHHHHHH
Confidence 77777777666667776654
No 299
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=81.07 E-value=2.3 Score=25.40 Aligned_cols=19 Identities=16% Similarity=0.347 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHcCChhH
Q 007193 127 CKLYTTLITTCAKSGKVDA 145 (613)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~ 145 (613)
..+|+.+...|...|++++
T Consensus 13 ~~a~~nla~~~~~~g~~~~ 31 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEE 31 (34)
T ss_pred HHHHHHHHHHHHHCcCHHh
Confidence 3333333333333333333
No 300
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=81.04 E-value=4.3 Score=23.92 Aligned_cols=28 Identities=29% Similarity=0.113 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 410 ITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 410 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
.+|..+..++...|++++|...|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4678888999999999999999999987
No 301
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=80.91 E-value=89 Score=33.93 Aligned_cols=38 Identities=13% Similarity=0.169 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHhCCCCCcccccCCceeeccccCcchHHHHH
Q 007193 552 PRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVY 592 (613)
Q Consensus 552 ~~a~~~~~~a~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~ 592 (613)
++| ++...+++++|..+...+.-+=+.+.++..+.++.
T Consensus 522 ~~A---L~~i~~L~liP~~~~~V~~~a~~f~~l~~~V~~~l 559 (613)
T PF04097_consen 522 EQA---LDIIEKLDLIPLDPSEVRRCAENFRQLDDEVRRNL 559 (613)
T ss_dssp HHH---HHHHHHTT-S-S-HHHHHHHHHCGCCS-HHHHTTH
T ss_pred HHH---HHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHH
Confidence 456 45555578899777666666677888888876643
No 302
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.57 E-value=27 Score=30.90 Aligned_cols=127 Identities=10% Similarity=0.070 Sum_probs=81.3
Q ss_pred hHHHHHHHH---hcCCHHHHHHHHHHHHHcCCC-CchHHHHHHHHHHHhhhHHHHHHHHHHHhCC-CCCHHHHHHH----
Q 007193 28 QLHSYNRLI---RQGRISECIDLLEDMERKGLL-DMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-NPTLSTFNML---- 98 (613)
Q Consensus 28 ~~~~~~~l~---~~g~~~~A~~l~~~m~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~l---- 98 (613)
....|..++ ..+.. +.....+.+...+.. .........+.......+++++|...++... .+....+..+
T Consensus 53 AS~~Y~~~i~~~~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lR 131 (207)
T COG2976 53 ASAQYQNAIKAVQAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALR 131 (207)
T ss_pred HHHHHHHHHHHHhcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHH
Confidence 333444444 45555 666667777766522 2233334445567778888999998888654 3433344433
Q ss_pred -HHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 007193 99 -MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157 (613)
Q Consensus 99 -i~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 157 (613)
.+...+.|.+++|+.+++.....+. .......--+.+...|+-++|+.-|.+....+
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 3567788899999998887765432 12233444577888999999999999888764
No 303
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=80.24 E-value=34 Score=28.77 Aligned_cols=49 Identities=14% Similarity=0.263 Sum_probs=28.9
Q ss_pred cCCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 007193 104 SSKDSEGAFQVLRLVQEAGLKAD---CKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (613)
Q Consensus 104 ~~~~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (613)
..++.+++..+++.|.-. .|+ ..++... .+...|++++|..+|+++.+.
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGW--LLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhHHH--HHHHcCCHHHHHHHHHhhhcc
Confidence 366677777777666643 232 2233333 345677777777777777654
No 304
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.07 E-value=25 Score=36.58 Aligned_cols=132 Identities=15% Similarity=0.170 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007193 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (613)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 208 (613)
..+.++..+.+.|-.++|+++- +|.. .-.....+.|+.+.|.++..+.. +..-|..|-++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s---------~D~d---~rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS---------TDPD---QRFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC---------CChh---hhhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHh
Confidence 3445555666666555555432 1211 11122345666666666655443 3456666777777
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007193 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (613)
Q Consensus 209 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 288 (613)
+.+++..|.+.|.... -|..|+-.+...|+-+....+-....+.|. .|.-.-+|...|+++++
T Consensus 678 ~~~~l~lA~EC~~~a~-----------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C 740 (794)
T KOG0276|consen 678 SAGELPLASECFLRAR-----------DLGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEEC 740 (794)
T ss_pred hcccchhHHHHHHhhc-----------chhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHH
Confidence 7777777766665543 134455556666665555555455555552 12222345566777766
Q ss_pred HHHHHHH
Q 007193 289 CSVYDDM 295 (613)
Q Consensus 289 ~~~~~~m 295 (613)
.+++.+-
T Consensus 741 ~~lLi~t 747 (794)
T KOG0276|consen 741 LELLIST 747 (794)
T ss_pred HHHHHhc
Confidence 6665543
No 305
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.08 E-value=42 Score=29.08 Aligned_cols=129 Identities=12% Similarity=0.123 Sum_probs=75.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHH--HHHHHcCCCh
Q 007193 315 GHAGKVEAAFEILQEAKNQGISVGII-SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS-TMNAL--ITALCDGDQL 390 (613)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~l--i~~~~~~g~~ 390 (613)
++.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-.....|-.. -..-| ...+..+|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 45566777777777777766432222 11222334566777888888888776543333322 11111 2235577888
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC
Q 007193 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443 (613)
Q Consensus 391 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~ 443 (613)
++.....+-+-..|-+-....-..|--+-.+.|++..|.+.|.++...-..|.
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 87777776665544222333444566667788888888888888876433443
No 306
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.66 E-value=98 Score=33.11 Aligned_cols=178 Identities=17% Similarity=0.172 Sum_probs=106.5
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHH----H-HHhcCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHcc
Q 007193 143 VDAMFEVFHEMVNAGIEPNVHTYGALID----G-CAKAGQVAKAFGAYGIMRS-------KNVKPDRVVFNALITACGQS 210 (613)
Q Consensus 143 ~~~a~~~~~~m~~~g~~~~~~~~~~li~----~-~~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~ 210 (613)
...+.+.++.....| +...-..+.. + +....+++.|+..|....+ .| +......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 456888888887765 3333222222 2 4467789999999998876 44 233455566666653
Q ss_pred C-----CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----
Q 007193 211 G-----AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN-AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS---- 280 (613)
Q Consensus 211 g-----~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~---- 280 (613)
. +.+.|+.++......+ .|+....-..+..... ..+...|.++|....+.|.. ..+-.+..+|.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g---~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG---NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLG 375 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC---CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCC
Confidence 2 6677888888876542 3454443333322222 24577899999988888743 22222222222
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007193 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (613)
Q Consensus 281 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (613)
-..+.+.|...+++.-+.| .|....-...+..+.. ++.+.+.-.+..+...+
T Consensus 376 v~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred cCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 2346788888888888887 3332222333334444 67777777777766665
No 307
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=78.46 E-value=4.8 Score=23.54 Aligned_cols=23 Identities=13% Similarity=0.042 Sum_probs=9.5
Q ss_pred HHHHHHHcCCChhHHHHHHHHHH
Q 007193 379 ALITALCDGDQLPKTMEVLSDMK 401 (613)
Q Consensus 379 ~li~~~~~~g~~~~A~~l~~~m~ 401 (613)
.+...|.+.|++++|++.|++..
T Consensus 6 ~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 6 YLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Confidence 33344444444444444444433
No 308
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=78.15 E-value=18 Score=27.76 Aligned_cols=45 Identities=13% Similarity=0.177 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (613)
Q Consensus 287 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 331 (613)
++.+-++.+...++.|+.....+.+.+|.+.+++..|..+++-++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444445555555555555555555555555555555444
No 309
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.65 E-value=59 Score=29.98 Aligned_cols=211 Identities=12% Similarity=0.121 Sum_probs=102.8
Q ss_pred CcccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCch-HHHHHHHHHHHhhhHHHHHHHHHHHhCCCC--CHHHHH
Q 007193 20 NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMD-KVYHARFFNVCKSQKAIKEAFRFFKLVPNP--TLSTFN 96 (613)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~ 96 (613)
++-.--+.+....+.+-...+++.|...+.+..+-- ..+ ..+|+ .+.++.|.-+.+++..- -+..|+
T Consensus 26 d~dgaas~yekAAvafRnAk~feKakdcLlkA~~~y--EnnrslfhA--------AKayEqaamLake~~klsEvvdl~e 95 (308)
T KOG1585|consen 26 DWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGY--ENNRSLFHA--------AKAYEQAAMLAKELSKLSEVVDLYE 95 (308)
T ss_pred CchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH--HhcccHHHH--------HHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344444455555566667778888887777665321 111 12222 23345555555554422 223455
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH---CC--CCCCHHHHHHHHHH
Q 007193 97 MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN---AG--IEPNVHTYGALIDG 171 (613)
Q Consensus 97 ~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g--~~~~~~~~~~li~~ 171 (613)
-....|.++|..+.|-..+++.-+. .+.-++++|+++|.+... .+ ...-...+..+-+.
T Consensus 96 KAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~ 159 (308)
T KOG1585|consen 96 KASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRV 159 (308)
T ss_pred HHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhH
Confidence 6666777777777766666554321 122334444444443221 00 00111223344455
Q ss_pred HHhcCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHhhCC-CCCCCCHHHHHHHHHHHH
Q 007193 172 CAKAGQVAKAFGAYGIMRSK----NVKPDR-VVFNALITACGQSGAVDRAFDVLAEMNAEV-HPVDPDHITIGALMKACA 245 (613)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~----g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~~~ll~~~~ 245 (613)
+.+...+++|-..|.+-... .-.++. ..|...|-.+.-..++..|.+.++.-.+.. ..-+.+..+...|+.+|-
T Consensus 160 lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd 239 (308)
T KOG1585|consen 160 LVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD 239 (308)
T ss_pred hhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc
Confidence 66666666665554433211 001121 234444555556667777777776643221 111234556666766653
Q ss_pred hcCChHHHHHHH
Q 007193 246 NAGQVDRAREVY 257 (613)
Q Consensus 246 ~~g~~~~A~~~~ 257 (613)
.|+.+++.+++
T Consensus 240 -~gD~E~~~kvl 250 (308)
T KOG1585|consen 240 -EGDIEEIKKVL 250 (308)
T ss_pred -cCCHHHHHHHH
Confidence 45666655544
No 310
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=77.41 E-value=31 Score=26.68 Aligned_cols=80 Identities=11% Similarity=0.040 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 007193 39 GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLV 118 (613)
Q Consensus 39 g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 118 (613)
...++|-.+-+.+...+- .......+-+....++|++++|..+....+.||...|-++-.. +.|-.+.+..-+.+|
T Consensus 19 HcHqEA~tIAdwL~~~~~--~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rl 94 (115)
T TIGR02508 19 HCHQEANTIADWLHLKGE--SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRL 94 (115)
T ss_pred hHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHH
Confidence 356777777777776652 2222222223344567788888888887777888887766443 445555555555556
Q ss_pred HHcC
Q 007193 119 QEAG 122 (613)
Q Consensus 119 ~~~g 122 (613)
...|
T Consensus 95 a~sg 98 (115)
T TIGR02508 95 AASG 98 (115)
T ss_pred HhCC
Confidence 6555
No 311
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=77.13 E-value=5.6 Score=24.58 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=12.0
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHH
Q 007193 376 TMNALITALCDGDQLPKTMEVLSDM 400 (613)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m 400 (613)
+++.|...|...|++++|..++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 4444555555555555555555443
No 312
>PRK09687 putative lyase; Provisional
Probab=76.97 E-value=71 Score=30.58 Aligned_cols=137 Identities=11% Similarity=-0.044 Sum_probs=64.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCcCHHhHHHHH
Q 007193 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG-KVEAAFEILQEAKNQGISVGIISYSSLM 346 (613)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li 346 (613)
+..+-...+.++.+.++ .+++..+-.+... +|...-...+.++.+.+ ....+...+..+.. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 34444555555555554 3455555555442 23333334444444332 12344444444442 23555555666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 007193 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420 (613)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 420 (613)
.++.+.|+. .|...+-...+. ++ .....+.++...|.. +|+..+..+... .||...-...+.+|.
T Consensus 214 ~aLg~~~~~-~av~~Li~~L~~---~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 214 IGLALRKDK-RVLSVLIKELKK---GT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHccCCh-hHHHHHHHHHcC---Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 666666663 344444443332 22 123455556666654 466666665542 345555544444443
No 313
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=76.60 E-value=33 Score=26.55 Aligned_cols=58 Identities=12% Similarity=0.218 Sum_probs=30.1
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007193 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200 (613)
Q Consensus 136 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 200 (613)
.+...|++++|..+.+.+. .||...|-+|-. .+.|..+.+..-+.+|..+| .|....|
T Consensus 48 SLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHccchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 3445566666666555542 556666655543 24555555555555555554 3443333
No 314
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=76.31 E-value=6.6 Score=24.24 Aligned_cols=26 Identities=12% Similarity=0.119 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 164 TYGALIDGCAKAGQVAKAFGAYGIMR 189 (613)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (613)
+++.|...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44555555555555555555555443
No 315
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=74.62 E-value=8.4 Score=22.45 Aligned_cols=28 Identities=18% Similarity=0.096 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 410 ITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 410 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
..+..+...+...|++++|++.+++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3566777889999999999999999887
No 316
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=74.47 E-value=1.1 Score=37.96 Aligned_cols=84 Identities=18% Similarity=0.203 Sum_probs=49.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC
Q 007193 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424 (613)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 424 (613)
++..+.+.+..+....+++.+...+...+....+.++..|++.+..++..++++. .+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 3455555666666666666666554445566677777777777666666666651 111333455666666676
Q ss_pred HHHHHHHHHHH
Q 007193 425 VEVGLMLLSQA 435 (613)
Q Consensus 425 ~~~a~~~~~~m 435 (613)
++++.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66666666543
No 317
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=73.79 E-value=69 Score=28.94 Aligned_cols=66 Identities=12% Similarity=0.088 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 007193 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (613)
Q Consensus 90 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (613)
.-+..||.+.--+...|+++.|.+.|+...+....-+-...|.-|..| --|++..|.+-|...-+.
T Consensus 97 ~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 97 DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHHHHHhc
Confidence 345667777777777777777777777777654322323333333332 456677776655555444
No 318
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=72.72 E-value=1.6 Score=36.80 Aligned_cols=52 Identities=13% Similarity=0.142 Sum_probs=21.8
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007193 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186 (613)
Q Consensus 135 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 186 (613)
+.+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 15 SAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 3333444444444444444433323334444444444444444444444433
No 319
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=72.52 E-value=22 Score=27.63 Aligned_cols=45 Identities=13% Similarity=0.223 Sum_probs=21.4
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007193 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (613)
Q Consensus 288 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (613)
..+-++.+...++.|+.....+.+.+|.+.+++..|..+|+-++.
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444444445555555555555555555555555555555443
No 320
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=70.96 E-value=97 Score=29.42 Aligned_cols=78 Identities=14% Similarity=-0.018 Sum_probs=43.7
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH------cC-----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007193 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK------SG-----KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (613)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~------~g-----~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 175 (613)
..+.--....+..+...+....++.+.+.+++. .| ...+|+++|.-+..+. .-..+-+-++.++...
T Consensus 102 t~ekLnraIdr~~k~ve~~~eee~~~~iscfgg~ev~~rqg~~vkWis~KA~ELFayLv~hk--gk~v~~~~~ie~lwpe 179 (361)
T COG3947 102 TPEKLNRAIDRRLKRVELTAEEESGTQISCFGGTEVVLRQGQQVKWISRKALELFAYLVEHK--GKEVTSWEAIEALWPE 179 (361)
T ss_pred CHHHHHHHHHHHhccccccchhccCeeeEeccceeeeccCCceeeehhhHHHHHHHHHHHhc--CCcccHhHHHHHHccc
Confidence 334444444444433333345566666666652 12 1357888998887652 2344455667777777
Q ss_pred CCHHHHHHHHH
Q 007193 176 GQVAKAFGAYG 186 (613)
Q Consensus 176 g~~~~A~~~~~ 186 (613)
.+..+|...+.
T Consensus 180 ~D~kka~s~lh 190 (361)
T COG3947 180 KDEKKASSLLH 190 (361)
T ss_pred cchhhHHHHHH
Confidence 77666665554
No 321
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=70.39 E-value=31 Score=31.05 Aligned_cols=58 Identities=12% Similarity=0.032 Sum_probs=33.5
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 007193 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154 (613)
Q Consensus 96 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 154 (613)
+..++.+.+.+++++|+...+.-++.. +.|...-..+++.+|-.|++++|..-++-.-
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 334455566666666666666555543 4445555566666666666666665544443
No 322
>PRK11619 lytic murein transglycosylase; Provisional
Probab=69.58 E-value=1.8e+02 Score=31.85 Aligned_cols=50 Identities=4% Similarity=-0.104 Sum_probs=33.3
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Q 007193 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433 (613)
Q Consensus 381 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 433 (613)
+..+...|...+|...+..+... .+......+.......|..+.+.....
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 45566778888888888887763 344445555555567777777665554
No 323
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=67.99 E-value=73 Score=26.82 Aligned_cols=80 Identities=14% Similarity=0.265 Sum_probs=48.6
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHhhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007193 377 MNALITALCDGDQLPKTMEVLSDMKSLG-----LCPNTITYSILLVACERKDD-VEVGLMLLSQAKEDGVIPNLVMFKCI 450 (613)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-----~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~l 450 (613)
.|+++.-....+.+.-.+.+++.+..-. -.-+..+|.+++.+.++... ---+..+|..+.+.+.+++...|.++
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4555555555555555555555543210 02345567777777766555 34566677777777778888888888
Q ss_pred HHHHHh
Q 007193 451 IGMCSR 456 (613)
Q Consensus 451 i~~~~~ 456 (613)
|..+.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 877654
No 324
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=67.98 E-value=31 Score=28.28 Aligned_cols=59 Identities=10% Similarity=0.169 Sum_probs=35.3
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHh
Q 007193 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86 (613)
Q Consensus 26 ~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 86 (613)
...+..|-.+++.-+ .+.++|..|..+|+....+.++...+..+...|++++|.++|..
T Consensus 66 ~RylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 66 ERYLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 445555555554333 77777777777766555566666666666666666666666653
No 325
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=67.94 E-value=40 Score=30.44 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=8.7
Q ss_pred HHHHHHHhcCChHHHHHHHH
Q 007193 239 ALMKACANAGQVDRAREVYK 258 (613)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~ 258 (613)
.++..+|-.|++++|..-++
T Consensus 40 flfqLlcvaGdw~kAl~Ql~ 59 (273)
T COG4455 40 FLFQLLCVAGDWEKALAQLN 59 (273)
T ss_pred HHHHHHhhcchHHHHHHHHH
Confidence 34444444444444444333
No 326
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=67.66 E-value=32 Score=33.12 Aligned_cols=88 Identities=14% Similarity=0.019 Sum_probs=50.3
Q ss_pred HhhhHHHHHHHHHHHhCC--CC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 007193 71 CKSQKAIKEAFRFFKLVP--NP-TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147 (613)
Q Consensus 71 ~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 147 (613)
+.++|.+++|+..|.... .| |++++..-..+|.+..++..|..=.......+ ..-+..|..-..+-...|...+|.
T Consensus 107 yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~EAK 185 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNMEAK 185 (536)
T ss_pred hhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHHHH
Confidence 345666777777666532 23 66666666666666666666655554444322 111334444455555566777777
Q ss_pred HHHHHHHHCCCCCC
Q 007193 148 EVFHEMVNAGIEPN 161 (613)
Q Consensus 148 ~~~~~m~~~g~~~~ 161 (613)
+-++..++. +|+
T Consensus 186 kD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 186 KDCETVLAL--EPK 197 (536)
T ss_pred HhHHHHHhh--Ccc
Confidence 777776665 455
No 327
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=67.48 E-value=1.1e+02 Score=28.87 Aligned_cols=128 Identities=13% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHH----HHHCCCCcCHHhHH
Q 007193 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDE-------VFLSALIDFAGHAGKVEAAFEILQE----AKNQGISVGIISYS 343 (613)
Q Consensus 275 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~----~~~~~~~~~~~~~~ 343 (613)
+.+-..+.+++++|+..+.++...|+..|. .+...+...|...|+...-.+.... |.+-.-+-...+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHH-----HHHHHHcCCChhHHHHHHHHHHh
Q 007193 344 SLMGACSNAKN-WQKALELYEHMKSIKLKPTVSTMNA-----LITALCDGDQLPKTMEVLSDMKS 402 (613)
Q Consensus 344 ~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~-----li~~~~~~g~~~~A~~l~~~m~~ 402 (613)
+|++.+....+ ++.-..+.....+...+........ +|..+.+.|++.+|+.+...+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ 153 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLH 153 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
No 328
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=67.32 E-value=52 Score=30.97 Aligned_cols=87 Identities=9% Similarity=0.008 Sum_probs=36.2
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh--
Q 007193 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ-- 281 (613)
Q Consensus 204 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-- 281 (613)
|.+++..+++.++....-+--+....++|.+. ..-|-.|++.+++..+.++-..-....-.-+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIl--eLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKIL--ELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHH--HHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 45555555555555443332222122333322 22233355555555555544333322111122234444444433
Q ss_pred ---cCCHHHHHHHH
Q 007193 282 ---TGDWEFACSVY 292 (613)
Q Consensus 282 ---~g~~~~a~~~~ 292 (613)
.|.+++|.++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 35555555544
No 329
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=67.04 E-value=76 Score=26.70 Aligned_cols=81 Identities=14% Similarity=0.216 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHcCCC-hhHHHHHHHHHHhCCCCCCHHHHHHH
Q 007193 342 YSSLMGACSNAKNWQKALELYEHMKSIK-----LKPTVSTMNALITALCDGDQ-LPKTMEVLSDMKSLGLCPNTITYSIL 415 (613)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~l 415 (613)
.|.++.-....++..-...+++.+.... -..+..+|.+++.+..+..- ---+..+|.-|.+.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4555555555555555555555442210 02345567888888766555 33466777888877778888888888
Q ss_pred HHHHhhc
Q 007193 416 LVACERK 422 (613)
Q Consensus 416 l~a~~~~ 422 (613)
+.+|.+-
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 8887654
No 330
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=66.82 E-value=9.2 Score=22.35 Aligned_cols=23 Identities=9% Similarity=0.005 Sum_probs=9.9
Q ss_pred HHHHHHHHcCCChhHHHHHHHHH
Q 007193 378 NALITALCDGDQLPKTMEVLSDM 400 (613)
Q Consensus 378 ~~li~~~~~~g~~~~A~~l~~~m 400 (613)
..+...|.+.|++++|.+.|++.
T Consensus 5 ~~lg~~y~~~~~~~~A~~~~~~a 27 (34)
T PF13181_consen 5 YNLGKIYEQLGDYEEALEYFEKA 27 (34)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 33344444444444444444443
No 331
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=66.25 E-value=42 Score=27.23 Aligned_cols=61 Identities=16% Similarity=0.273 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007193 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453 (613)
Q Consensus 392 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 453 (613)
|..+-++.+..-.+.|++......+.||.+..|+..|.++|+-+... +.+...+|..++.-
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~e 127 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVKE 127 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHHH
Confidence 44555666677778999999999999999999999999999887742 34555577777654
No 332
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.99 E-value=98 Score=27.54 Aligned_cols=88 Identities=16% Similarity=0.125 Sum_probs=46.4
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHH-----HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 007193 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG-----ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279 (613)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~-----~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 279 (613)
..+...+++++|..-++..... |....+. .|.......|.+++|...++.....+.. ......-.+.+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~-----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDil 169 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ-----TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDIL 169 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc-----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHH
Confidence 4556667777777666665432 1112222 2334455566666666666655544321 11122234456
Q ss_pred HhcCCHHHHHHHHHHHHHCC
Q 007193 280 SQTGDWEFACSVYDDMTKKG 299 (613)
Q Consensus 280 ~~~g~~~~a~~~~~~m~~~g 299 (613)
...|+-++|..-|......+
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 170 LAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHcCchHHHHHHHHHHHHcc
Confidence 66666666666666666554
No 333
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=65.07 E-value=1.9e+02 Score=30.52 Aligned_cols=128 Identities=9% Similarity=0.143 Sum_probs=87.7
Q ss_pred hhHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHH
Q 007193 27 EQLHSYNRLIRQG----RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLM 99 (613)
Q Consensus 27 ~~~~~~~~l~~~g----~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li 99 (613)
.....|..++..+ ..+.++.++..+..+- |.-..++..+...-.+.|..+.+.++|++.. +-++..|...+
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky--Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSKY--PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYL 120 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3455677777433 3455666666666554 5555556666666667788999999998754 45666777766
Q ss_pred HHH-HcCCChHHHHHHHHHHHHc-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 007193 100 SVC-ASSKDSEGAFQVLRLVQEA-GLK-ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (613)
Q Consensus 100 ~~~-~~~~~~~~A~~~~~~m~~~-g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (613)
.-+ ...|+.+.....|+..... |.. .+...|...|..-..++++.....+++..++.
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 554 3567788888888887753 221 23556777888778888999999999998853
No 334
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=64.90 E-value=1.7e+02 Score=30.09 Aligned_cols=105 Identities=14% Similarity=0.020 Sum_probs=58.9
Q ss_pred HHhcCCHHHHHHHHHHHH---hCCCCCC-----HHHHHHHHHHHHcCCChhHHHHHHHHHHh-------CCCCCCH----
Q 007193 349 CSNAKNWQKALELYEHMK---SIKLKPT-----VSTMNALITALCDGDQLPKTMEVLSDMKS-------LGLCPNT---- 409 (613)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~---~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~-------~g~~p~~---- 409 (613)
+.-.|++.+|.+++...- +.|...+ -..||.|...+.+.|.+.-+..+|....+ .|++|..
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 445677777777665432 1121111 22345555555566666666666555442 4555532
Q ss_pred -------HHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007193 410 -------ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (613)
Q Consensus 410 -------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 455 (613)
.+|+.= -.+.+.|++-.|.+.|.+..+. +..++..|-.|-.+|.
T Consensus 330 s~nks~eilYNcG-~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 330 SQNKSMEILYNCG-LLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred hcccchhhHHhhh-HHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 223322 2466788888888888776653 5566777777777664
No 335
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=63.47 E-value=80 Score=32.09 Aligned_cols=147 Identities=14% Similarity=0.039 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHH
Q 007193 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273 (613)
Q Consensus 194 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 273 (613)
.|...--..-|.--...|++-.|-+-+..... ..+.+..........+...|+++.+...+...... +.....+..
T Consensus 286 ~~~~~~~~~si~k~~~~gd~~aas~~~~~~lr---~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~ 361 (831)
T PRK15180 286 QDQIREITLSITKQLADGDIIAASQQLFAALR---NQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLR 361 (831)
T ss_pred CcchhHHHHHHHHHhhccCHHHHHHHHHHHHH---hCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHH
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHH
Q 007193 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345 (613)
Q Consensus 274 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 345 (613)
.++....+.|++++|..+-.-|....+. +........-..-..|-++++...|+++...+.+.+....|-+
T Consensus 362 ~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~ 432 (831)
T PRK15180 362 CRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFL 432 (831)
T ss_pred HHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeee
No 336
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=63.29 E-value=1.4e+02 Score=28.43 Aligned_cols=71 Identities=8% Similarity=0.017 Sum_probs=50.8
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH-----cCCCCCHHHH
Q 007193 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-----DGVIPNLVMF 447 (613)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~ 447 (613)
+++.....|..+|.+.+|.++-++...-. +.+...+-.++..+...|+--.+.+-++++.+ .|+..+..++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 34455677888999999999988887742 34677778888889999987777776666542 3666655443
No 337
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=62.26 E-value=24 Score=33.93 Aligned_cols=49 Identities=18% Similarity=0.006 Sum_probs=27.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHH
Q 007193 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361 (613)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 361 (613)
.-|.+.|.+++|+..|...+... +-+++++..-..+|.+...+..|..=
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~D 153 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEED 153 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHh
Confidence 44556666666666666554442 22555555555566666655544443
No 338
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=62.17 E-value=19 Score=23.11 Aligned_cols=23 Identities=30% Similarity=0.200 Sum_probs=12.8
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHH
Q 007193 415 LLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 415 ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
+..+|...|+.+.|+.+++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555554
No 339
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=62.09 E-value=13 Score=20.44 Aligned_cols=16 Identities=19% Similarity=-0.022 Sum_probs=6.6
Q ss_pred HHHHHhcCCHHHHHHH
Q 007193 346 MGACSNAKNWQKALEL 361 (613)
Q Consensus 346 i~~~~~~g~~~~A~~~ 361 (613)
...+...|++++|..+
T Consensus 8 a~~~~~~G~~~eA~~~ 23 (26)
T PF07721_consen 8 ARALLAQGDPDEAERL 23 (26)
T ss_pred HHHHHHcCCHHHHHHH
Confidence 3334444444444443
No 340
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=61.95 E-value=13 Score=21.33 Aligned_cols=17 Identities=18% Similarity=0.190 Sum_probs=6.8
Q ss_pred HhcCCHHHHHHHHHHHH
Q 007193 173 AKAGQVAKAFGAYGIMR 189 (613)
Q Consensus 173 ~~~g~~~~A~~~~~~m~ 189 (613)
.+.|++++|.+.|+++.
T Consensus 11 ~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 11 YKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHH
Confidence 33344444444444333
No 341
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=61.71 E-value=2.4e+02 Score=30.64 Aligned_cols=190 Identities=17% Similarity=0.204 Sum_probs=100.7
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHh-hhHHHHHHHHHHHhCC----CCCHH-----HH
Q 007193 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDM--DKVYHARFFNVCK-SQKAIKEAFRFFKLVP----NPTLS-----TF 95 (613)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~--~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~----~~~~~-----~~ 95 (613)
.+..|..||+ .|+..++-+.+....++ ...++..++.++. ...++++|...+.+.. .++.. .-
T Consensus 29 ~l~~Y~kLI~-----~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~ 103 (608)
T PF10345_consen 29 QLKQYYKLIA-----TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQ 103 (608)
T ss_pred hHHHHHHHHH-----HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 3444444443 46777777764332232 2334444455443 4456788888887642 22111 12
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcC----CCCCHHHHHHH-HHHHHHcCChhHHHHHHHHHHHCC---CCCCHHHHHH
Q 007193 96 NMLMSVCASSKDSEGAFQVLRLVQEAG----LKADCKLYTTL-ITTCAKSGKVDAMFEVFHEMVNAG---IEPNVHTYGA 167 (613)
Q Consensus 96 ~~li~~~~~~~~~~~A~~~~~~m~~~g----~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~~~ 167 (613)
..++..+.+.+... |...++...+.- ..+-...|..+ +..+...++...|.+.++.+...- ..|-..++-.
T Consensus 104 ~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~ 182 (608)
T PF10345_consen 104 FLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLAS 182 (608)
T ss_pred HHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHH
Confidence 24456666666555 888887766432 12223334433 333333478888888888775432 2444555555
Q ss_pred HHHHHH--hcCCHHHHHHHHHHHHhCC---------CCCCHHHHHHHHHHHH--ccCCHHHHHHHHHHH
Q 007193 168 LIDGCA--KAGQVAKAFGAYGIMRSKN---------VKPDRVVFNALITACG--QSGAVDRAFDVLAEM 223 (613)
Q Consensus 168 li~~~~--~~g~~~~A~~~~~~m~~~g---------~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~m 223 (613)
++.+.. +.+..+++.+..+++.... ..|-..+|..+++.++ ..|+++.+.+.++++
T Consensus 183 l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 183 LSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555544 3455666777666663321 1344566777766543 456665655554443
No 342
>PHA02875 ankyrin repeat protein; Provisional
Probab=61.49 E-value=1.9e+02 Score=29.41 Aligned_cols=12 Identities=17% Similarity=0.230 Sum_probs=5.1
Q ss_pred HHHhcCCHHHHH
Q 007193 171 GCAKAGQVAKAF 182 (613)
Q Consensus 171 ~~~~~g~~~~A~ 182 (613)
..++.|+.+.+.
T Consensus 74 ~A~~~g~~~~v~ 85 (413)
T PHA02875 74 DAVEEGDVKAVE 85 (413)
T ss_pred HHHHCCCHHHHH
Confidence 334444444433
No 343
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=61.47 E-value=1.9e+02 Score=29.43 Aligned_cols=396 Identities=12% Similarity=0.097 Sum_probs=224.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC-------C-----------CCHHHHHHHHH
Q 007193 39 GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-------N-----------PTLSTFNMLMS 100 (613)
Q Consensus 39 g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~-----------~~~~~~~~li~ 100 (613)
.+++.....+.++.+.. +....+.....-.+-+.+.+++|+..|..-. + +|-..=+..+.
T Consensus 59 ~nld~Me~~l~~l~~~~--~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~ 136 (549)
T PF07079_consen 59 NNLDLMEKQLMELRQQF--GKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAH 136 (549)
T ss_pred hhHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHH
Confidence 45555555566665554 3333333333344556788888888775321 1 12223345667
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHHcC--------ChhHHHHHH-------HHHHHC-----
Q 007193 101 VCASSKDSEGAFQVLRLVQEAGLK----ADCKLYTTLITTCAKSG--------KVDAMFEVF-------HEMVNA----- 156 (613)
Q Consensus 101 ~~~~~~~~~~A~~~~~~m~~~g~~----~~~~~~~~li~~~~~~g--------~~~~a~~~~-------~~m~~~----- 156 (613)
.+...|++.+++.+++++...=.+ -+..+|+.++-++++.= ..+-.-..| .+|...
T Consensus 137 sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y 216 (549)
T PF07079_consen 137 SLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPY 216 (549)
T ss_pred HHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchH
Confidence 788999999999999888765433 78889998777776541 111111122 122111
Q ss_pred -CCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC-
Q 007193 157 -GIEPNVHTYGALIDGCAKA--GQVAKAFGAYGIMRSKNVKPDRV-VFNALITACGQSGAVDRAFDVLAEMNAEVHPVD- 231 (613)
Q Consensus 157 -g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~- 231 (613)
.+.|-......++....-. .+..--.++++.....-+.|+-. ....|...+.. +.+++..+-+.+... .+.
T Consensus 217 ~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~--~i~~ 292 (549)
T PF07079_consen 217 EKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASS--KIEK 292 (549)
T ss_pred HhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHH--hHHH
Confidence 1223333333333322211 12223334444444444556543 33344455544 566666666555432 111
Q ss_pred ---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHH-------HHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 007193 232 ---PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV-------YTIAINCCSQ----TGDWEFACSVYDDMTK 297 (613)
Q Consensus 232 ---~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------~~~li~~~~~----~g~~~~a~~~~~~m~~ 297 (613)
.=..++..++....+.++...|.+.+..+...+ |+... -..+-+..+. .-+..+=+.+++....
T Consensus 293 Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs 370 (549)
T PF07079_consen 293 LKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQS 370 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHh
Confidence 113567788888889999999999998887654 32221 1223333331 1223344556666666
Q ss_pred CCCCCCHHHHHHHHHH---HHhcCC-HHHHHHHHHHHHHCCCCcCHHhHHHHHH----HHHh---cCCHHHHHHHHHHHH
Q 007193 298 KGVIPDEVFLSALIDF---AGHAGK-VEAAFEILQEAKNQGISVGIISYSSLMG----ACSN---AKNWQKALELYEHMK 366 (613)
Q Consensus 298 ~g~~p~~~~~~~li~~---~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~----~~~~---~g~~~~A~~~~~~m~ 366 (613)
.++. .......++.+ +-+.|. -++|+.+++.+.+-. +-|...-|.+.. .|.. ...+.+-.++-+-+.
T Consensus 371 ~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~ 448 (549)
T PF07079_consen 371 YDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFIT 448 (549)
T ss_pred hccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 5542 11222233322 333444 788999999888764 445555554432 2321 233455555556667
Q ss_pred hCCCCCCHHH----HHHHHHH--HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCC
Q 007193 367 SIKLKPTVST----MNALITA--LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440 (613)
Q Consensus 367 ~~~~~~~~~~----~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~ 440 (613)
+.|+.|-.+. -|.|.++ +...|++.++.-.-..+.+ +.|++.+|..+.-......++++|..++.. +
T Consensus 449 e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----L 521 (549)
T PF07079_consen 449 EVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----L 521 (549)
T ss_pred hcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----C
Confidence 7787775433 3444433 4468899988777666665 789999999998888899999999998866 4
Q ss_pred CCCHHHHHHHH
Q 007193 441 IPNLVMFKCII 451 (613)
Q Consensus 441 ~p~~~~~~~li 451 (613)
+|+..++++=+
T Consensus 522 P~n~~~~dskv 532 (549)
T PF07079_consen 522 PPNERMRDSKV 532 (549)
T ss_pred CCchhhHHHHH
Confidence 56766666543
No 344
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=61.24 E-value=1.6e+02 Score=28.27 Aligned_cols=72 Identities=17% Similarity=0.231 Sum_probs=38.9
Q ss_pred HHHhcCCHHHHHHHHH-HHHHCCCCCCH----HHHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCcCHHhHHHHHHHHHh
Q 007193 278 CCSQTGDWEFACSVYD-DMTKKGVIPDE----VFLSALIDFAGHAGKVE-AAFEILQEAKNQGISVGIISYSSLMGACSN 351 (613)
Q Consensus 278 ~~~~~g~~~~a~~~~~-~m~~~g~~p~~----~~~~~li~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 351 (613)
-..+...+++.....+ +|.+.++ |+. ..|+.++++-.-..+-+ -|.+.+++ ..+|.-|+.+++.
T Consensus 264 q~s~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qalrh---------lK~yaPLL~af~s 333 (412)
T KOG2297|consen 264 QVSEEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQALRH---------LKQYAPLLAAFCS 333 (412)
T ss_pred HhccCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHHHHH---------HHhhhHHHHHHhc
Confidence 3344445555555554 4555443 554 35777776644332211 12222222 4567888889999
Q ss_pred cCCHHHHH
Q 007193 352 AKNWQKAL 359 (613)
Q Consensus 352 ~g~~~~A~ 359 (613)
.|+.+..+
T Consensus 334 ~g~sEL~L 341 (412)
T KOG2297|consen 334 QGQSELEL 341 (412)
T ss_pred CChHHHHH
Confidence 98876543
No 345
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=60.98 E-value=25 Score=20.35 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007193 271 VYTIAINCCSQTGDWEFACSVYDDMTK 297 (613)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 297 (613)
+|..+...|.+.|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555555555666666655555443
No 346
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=60.58 E-value=1.1e+02 Score=28.89 Aligned_cols=87 Identities=6% Similarity=-0.045 Sum_probs=41.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-----
Q 007193 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC----- 385 (613)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~----- 385 (613)
|.+++..+++.+++...-+--+..-+..+.+.-.-|-.|+|.|....+.++-..-.+..-..+...|.+++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 455566666655554333322221112223333334446666666666665555444222223334555544443
Q ss_pred cCCChhHHHHHH
Q 007193 386 DGDQLPKTMEVL 397 (613)
Q Consensus 386 ~~g~~~~A~~l~ 397 (613)
=.|.+++|.++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 346666666655
No 347
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=60.38 E-value=1.8e+02 Score=28.68 Aligned_cols=27 Identities=11% Similarity=0.280 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007193 271 VYTIAINCCSQTGDWEFACSVYDDMTK 297 (613)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 297 (613)
+|..+...+.+.|+++.|...+..+..
T Consensus 148 ~~l~~a~~aRk~g~~~~A~~~l~~~~~ 174 (352)
T PF02259_consen 148 TWLKFAKLARKAGNFQLALSALNRLFQ 174 (352)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHhc
Confidence 444444445555555555555444443
No 348
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=58.86 E-value=23 Score=22.72 Aligned_cols=20 Identities=10% Similarity=0.011 Sum_probs=8.5
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 007193 170 DGCAKAGQVAKAFGAYGIMR 189 (613)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~ 189 (613)
.+|...|+.+.|.+++++..
T Consensus 7 ~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHcCChHHHHHHHHHHH
Confidence 34444444444444444443
No 349
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=56.25 E-value=85 Score=23.68 Aligned_cols=14 Identities=14% Similarity=0.107 Sum_probs=5.7
Q ss_pred CCHHHHHHHHHHHH
Q 007193 283 GDWEFACSVYDDMT 296 (613)
Q Consensus 283 g~~~~a~~~~~~m~ 296 (613)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 33444444444443
No 350
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=56.21 E-value=1.9e+02 Score=27.62 Aligned_cols=61 Identities=11% Similarity=0.120 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007193 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKY-NIKGTPEVYTIAINCCSQTGDWEFACSV 291 (613)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~ 291 (613)
.++..+...++..+++.+++..-.++++..... +...|...|..+|....+.|+..-..++
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki 260 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI 260 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
Confidence 444455555566666666666655555544333 3333455566666666666655443333
No 351
>PRK11619 lytic murein transglycosylase; Provisional
Probab=55.89 E-value=3.1e+02 Score=30.02 Aligned_cols=254 Identities=8% Similarity=-0.036 Sum_probs=137.9
Q ss_pred CChhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 007193 141 GKVDAMFEVFHEMVNAG-IEPN--VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217 (613)
Q Consensus 141 g~~~~a~~~~~~m~~~g-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 217 (613)
.+.+.|..++....... +.+. ..++..+....+..+...+|...++...... .|......-+......++++.+.
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHH
Confidence 45677888888764332 2211 2234444444444433566777776654332 23444444555556788888888
Q ss_pred HHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHH
Q 007193 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF-ACSVYDDMT 296 (613)
Q Consensus 218 ~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~ 296 (613)
..+..|.... .....-.--+..++...|+.++|...|+.+... . .-|..|...- .|..-. ....... .
T Consensus 333 ~~i~~L~~~~---~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~---~--~fYG~LAa~~--Lg~~~~~~~~~~~~-~ 401 (644)
T PRK11619 333 TWLARLPMEA---KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ---R--GFYPMVAAQR--LGEEYPLKIDKAPK-P 401 (644)
T ss_pred HHHHhcCHhh---ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC---C--CcHHHHHHHH--cCCCCCCCCCCCCc-h
Confidence 8888876532 223334445666767789999999888887432 1 1232222211 121100 0000000 0
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCH
Q 007193 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK--PTV 374 (613)
Q Consensus 297 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~ 374 (613)
...+. .. .-..-+..+...|....|...+..+... .+......+.....+.|..+.+..........+.. .-+
T Consensus 402 ~~~~~-~~-~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp 476 (644)
T PRK11619 402 DSALT-QG-PEMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFP 476 (644)
T ss_pred hhhhc-cC-hHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCC
Confidence 00000 00 0112234566779999999999888775 24455566666667788888877665443221000 011
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHH
Q 007193 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412 (613)
Q Consensus 375 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 412 (613)
..|...+..+.+.-.++.++-.---..++++.|+..+-
T Consensus 477 ~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~a~S~ 514 (644)
T PRK11619 477 LAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPKARSP 514 (644)
T ss_pred cchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCccC
Confidence 24777777777777777776544445577888886654
No 352
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=55.69 E-value=1.4e+02 Score=26.76 Aligned_cols=21 Identities=14% Similarity=0.226 Sum_probs=11.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 007193 278 CCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 278 ~~~~~g~~~~a~~~~~~m~~~ 298 (613)
+|.+...+++|++=|+.+.+.
T Consensus 177 ayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHh
Confidence 444555555555555555554
No 353
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=53.73 E-value=1.1e+02 Score=24.17 Aligned_cols=80 Identities=11% Similarity=0.128 Sum_probs=36.5
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007193 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185 (613)
Q Consensus 106 ~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 185 (613)
...++|..+.+.+...+- ....+--+-+..+.+.|++++|. ..- .....||...|-+|-. .+.|-.+++...+
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~AL--l~~--~~~~~pdL~p~~AL~a--~klGL~~~~e~~l 92 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEAL--LLP--QCHCYPDLEPWAALCA--WKLGLASALESRL 92 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHH--HHH--TTS--GGGHHHHHHHH--HHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHH--Hhc--ccCCCccHHHHHHHHH--HhhccHHHHHHHH
Confidence 345566666666665442 22222223333445666666661 111 1112456666655433 3566666666666
Q ss_pred HHHHhCC
Q 007193 186 GIMRSKN 192 (613)
Q Consensus 186 ~~m~~~g 192 (613)
.++-.+|
T Consensus 93 ~rla~~g 99 (116)
T PF09477_consen 93 TRLASSG 99 (116)
T ss_dssp HHHCT-S
T ss_pred HHHHhCC
Confidence 6665554
No 354
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=52.39 E-value=54 Score=22.03 Aligned_cols=36 Identities=11% Similarity=0.055 Sum_probs=20.8
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007193 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452 (613)
Q Consensus 415 ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 452 (613)
+.-++.+.|++++|++..+.+++ ++|+..-...|-.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHH
Confidence 34466677777777777777766 4566554444433
No 355
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=51.67 E-value=1.8e+02 Score=26.08 Aligned_cols=73 Identities=8% Similarity=0.002 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHccCCHHHHH
Q 007193 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK---NVKPDRVVFNALITACGQSGAVDRAF 217 (613)
Q Consensus 144 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~a~ 217 (613)
+.|.+.|-.+...+.--++.....|...|. ..+.+++..++.+..+. +-.+|+..+.+|.+.+.+.++.+.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 667777777776664555555666666555 55677777777766542 33567777777888877777777663
No 356
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.30 E-value=4.1e+02 Score=30.07 Aligned_cols=111 Identities=13% Similarity=0.178 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCC--CCC-CHHHHHHHHHHHHhcCC-----------------HHHHHHHHHH-
Q 007193 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAG--IEP-NVHTYGALIDGCAKAGQ-----------------VAKAFGAYGI- 187 (613)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~-~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~- 187 (613)
-|..|+..|...|..++|+++|.+..... ..+ -..-+-.++.-+.+.+. .+.+.++|..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 46778888888888888888887776521 000 01112223333333333 3333344333
Q ss_pred --HHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhc
Q 007193 188 --MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (613)
Q Consensus 188 --m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~ 247 (613)
-....+.++ -+-.|......+-+...++.+.... -.++..-.+.++..|+..
T Consensus 586 ~~~~~~sis~~------~Vl~~l~~~~~~l~I~YLE~li~~~--~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 586 DKQEAESISRD------DVLNYLKSKEPKLLIPYLEHLISDN--RLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred ChhhhccCCHH------HHHHHhhhhCcchhHHHHHHHhHhc--cccchHHHHHHHHHHHHH
Confidence 000111111 1224566677778888888887642 244666667777777653
No 357
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=51.23 E-value=19 Score=29.54 Aligned_cols=31 Identities=26% Similarity=0.524 Sum_probs=22.1
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007193 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (613)
Q Consensus 139 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 171 (613)
..|.-..|..+|.+|+..|-+||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 445667778888888888877764 7777654
No 358
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=50.09 E-value=1.8e+02 Score=25.58 Aligned_cols=40 Identities=13% Similarity=0.235 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 007193 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (613)
Q Consensus 178 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 225 (613)
+++|.+.|++.... .|+...|+.-+.... +|-+++.++.+
T Consensus 96 F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~ 135 (186)
T PF06552_consen 96 FEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHK 135 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHH
Confidence 44555555555544 677777776666543 34445544433
No 359
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=49.97 E-value=1.8e+02 Score=25.57 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007193 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (613)
Q Consensus 144 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (613)
++|.+.|++.... +|+..+|+.-+....
T Consensus 97 ~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 97 EKATEYFQKAVDE--DPNNELYRKSLEMAA 124 (186)
T ss_dssp HHHHHHHHHHHHH---TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCCcHHHHHHHHHHH
Confidence 3344444444433 566666666666553
No 360
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=48.64 E-value=67 Score=20.99 Aligned_cols=29 Identities=7% Similarity=0.120 Sum_probs=12.5
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 007193 387 GDQLPKTMEVLSDMKSLGLCPNTITYSIL 415 (613)
Q Consensus 387 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 415 (613)
.|-.+++..++++|.+.|+.-+...|..+
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 33344444444444444444444444433
No 361
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=48.59 E-value=2e+02 Score=25.76 Aligned_cols=55 Identities=15% Similarity=0.233 Sum_probs=29.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 007193 347 GACSNAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (613)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 403 (613)
.++.+.+.++.|+.--....+.+ |+ .....--..+|.+...+++|++-+.++.+.
T Consensus 142 aa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 142 AALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 34455556666655555555432 22 111122234566666777777777777663
No 362
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=48.20 E-value=95 Score=23.43 Aligned_cols=32 Identities=9% Similarity=0.085 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCC
Q 007193 75 KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKD 107 (613)
Q Consensus 75 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 107 (613)
|+.+.|.++++.++ ..+-.|..+++++-..|.
T Consensus 50 g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~ 81 (88)
T cd08819 50 GNESGARELLKRIV-QKEGWFSKFLQALRETEH 81 (88)
T ss_pred CcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCc
Confidence 44444455554444 344444444444444443
No 363
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=47.48 E-value=75 Score=20.75 Aligned_cols=30 Identities=3% Similarity=0.150 Sum_probs=13.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007193 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203 (613)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 203 (613)
+.|-..++..++++|.+.|+.-+...+..+
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 334444444444444444444444444433
No 364
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=47.27 E-value=1.4e+02 Score=24.43 Aligned_cols=47 Identities=13% Similarity=0.215 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (613)
Q Consensus 287 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (613)
+..+-++.+...++.|+.......+.+|.+.+++..|..+|+-++.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34455556666667777777777777777777777777777766544
No 365
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=46.45 E-value=3.2e+02 Score=27.50 Aligned_cols=63 Identities=16% Similarity=0.030 Sum_probs=37.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007193 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261 (613)
Q Consensus 199 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 261 (613)
+...|++...-.|+.....+.++.|...-.+..|...+---+.-+|.-.+++.+|.++|-.+.
T Consensus 237 sL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 237 SLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 344566666667776666677777665444444443222344556666777777777776543
No 366
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=46.24 E-value=25 Score=28.89 Aligned_cols=30 Identities=20% Similarity=0.241 Sum_probs=17.4
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007193 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418 (613)
Q Consensus 387 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 418 (613)
.|.-.+|..+|++|++.|-+|| .|+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 3555566666666666666665 34444443
No 367
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=45.90 E-value=4.3e+02 Score=28.77 Aligned_cols=155 Identities=11% Similarity=0.107 Sum_probs=66.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCcCHHhHHHHHHHHHh---
Q 007193 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG-ISVGIISYSSLMGACSN--- 351 (613)
Q Consensus 276 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~--- 351 (613)
...+.-.|+++.|++.+.+ ..+...|.+.+...+..| |-+......-..+.... -.|...-+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~---gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYY---GLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHT---T------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHc---CCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 4455678999999998887 222333555555555443 32222222112222221 01222567788888875
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHH-HHHHcCCChhHH-----------HHHHHH-HHhCCCCC-CHHH---HH
Q 007193 352 AKNWQKALELYEHMKSIKLKPT-VSTMNALI-TALCDGDQLPKT-----------MEVLSD-MKSLGLCP-NTIT---YS 413 (613)
Q Consensus 352 ~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li-~~~~~~g~~~~A-----------~~l~~~-m~~~g~~p-~~~t---~~ 413 (613)
..+..+|.+.|-.+....- |+ ...+...+ ......+.++.- --++++ ..--++.. +... ..
T Consensus 340 ~td~~~Al~Y~~li~~~~~-~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~ 418 (613)
T PF04097_consen 340 ITDPREALQYLYLICLFKD-PEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIE 418 (613)
T ss_dssp TT-HHHHHHHHHGGGGS-S-CCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHH
Confidence 4678888888887765432 22 22222222 222222211111 111222 00001222 2222 22
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHH
Q 007193 414 ILLVACERKDDVEVGLMLLSQAK 436 (613)
Q Consensus 414 ~ll~a~~~~g~~~~a~~~~~~m~ 436 (613)
.+..-|...|++++|..+|....
T Consensus 419 ~~A~~~e~~g~~~dAi~Ly~La~ 441 (613)
T PF04097_consen 419 QAAREAEERGRFEDAILLYHLAE 441 (613)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHh
Confidence 33455788999999999997765
No 368
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=45.52 E-value=3.5e+02 Score=27.59 Aligned_cols=77 Identities=12% Similarity=0.071 Sum_probs=59.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 007193 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (613)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 386 (613)
...|+.-|.-.|++.+|....+++--- +-....++-+++.+..+.|+-..-+.+++..-.. ..+|-+.|-.+|.+
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s----glIT~nQMtkGf~R 586 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKS----GLITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CceeHHHhhhhhhh
Confidence 567888899999999999888765321 1235678889999999999988888888887754 45677888888876
Q ss_pred CC
Q 007193 387 GD 388 (613)
Q Consensus 387 ~g 388 (613)
-.
T Consensus 587 V~ 588 (645)
T KOG0403|consen 587 VY 588 (645)
T ss_pred hh
Confidence 43
No 369
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=45.51 E-value=1.1e+02 Score=27.23 Aligned_cols=33 Identities=21% Similarity=0.193 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 405 LCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 405 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
..|+..+|..++.++...|+.++|.+...++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 478888888888888888888888888888776
No 370
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=45.39 E-value=1.4e+02 Score=23.63 Aligned_cols=27 Identities=11% Similarity=0.144 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007193 271 VYTIAINCCSQTGDWEFACSVYDDMTK 297 (613)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 297 (613)
-|..++..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477788888888888888888877766
No 371
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=45.11 E-value=1.5e+02 Score=23.39 Aligned_cols=81 Identities=15% Similarity=0.101 Sum_probs=42.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 007193 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRL 117 (613)
Q Consensus 38 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 117 (613)
....++|-.+.+.+...+. .......+-+....++|++++|+..=.....||...|-+|-. .+.|-.+++...+.+
T Consensus 19 ~HcH~EA~tIa~wL~~~~~--~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE--MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTR 94 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT--THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 4567888888888877763 222222222233455677777744434455667777665533 345555666665555
Q ss_pred HHHcC
Q 007193 118 VQEAG 122 (613)
Q Consensus 118 m~~~g 122 (613)
+...|
T Consensus 95 la~~g 99 (116)
T PF09477_consen 95 LASSG 99 (116)
T ss_dssp HCT-S
T ss_pred HHhCC
Confidence 55444
No 372
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=44.67 E-value=2.8e+02 Score=26.22 Aligned_cols=25 Identities=24% Similarity=0.119 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHH
Q 007193 126 DCKLYTTLITTCAKSGKVDAMFEVF 150 (613)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~a~~~~ 150 (613)
|+.....+...|.+.|++.+|+..|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 5677777888888888888887665
No 373
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=44.38 E-value=3e+02 Score=26.49 Aligned_cols=67 Identities=22% Similarity=0.357 Sum_probs=37.2
Q ss_pred HHHHHHHH-HHHHHCCCCcCHH----hHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHcCCChhHH
Q 007193 320 VEAAFEIL-QEAKNQGISVGII----SYSSLMGACSNAKNWQKALELY-EHMKSIKLKPTVSTMNALITALCDGDQLPKT 393 (613)
Q Consensus 320 ~~~a~~~~-~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~-~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 393 (613)
+++..... ++|.+.++ |++. +|..++++ +.|.+-.++- ++.. ....+|.-|+.+++..|+.+-.
T Consensus 271 ~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsa----veWnKkeelva~qal-----rhlK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 271 VKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSA----VEWNKKEELVAEQAL-----RHLKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHH----HhhchHHHHHHHHHH-----HHHHhhhHHHHHHhcCChHHHH
Confidence 44444433 45666654 4444 45665554 3333322222 2222 3456799999999999998865
Q ss_pred HHH
Q 007193 394 MEV 396 (613)
Q Consensus 394 ~~l 396 (613)
+-+
T Consensus 341 Ll~ 343 (412)
T KOG2297|consen 341 LLL 343 (412)
T ss_pred HHH
Confidence 533
No 374
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=44.07 E-value=4.2e+02 Score=28.11 Aligned_cols=364 Identities=10% Similarity=0.025 Sum_probs=188.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHH-HHhhhHHHHHHHHHHHhCC------CCCHHHHHHHHHHHHcCCChH
Q 007193 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFKLVP------NPTLSTFNMLMSVCASSKDSE 109 (613)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~~~~~ 109 (613)
+-|..+.+..+|++-...= |....+...... .+...|+.+.-...|+... --+...|-..|.--...+++.
T Consensus 91 klg~~~~s~~Vfergv~ai--p~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k 168 (577)
T KOG1258|consen 91 KLGNAENSVKVFERGVQAI--PLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWK 168 (577)
T ss_pred HhhhHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHH
Confidence 6788899999999988642 444444444433 3445566677777777643 134567888888888889999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---c------CChhHHHHHHHHHHHC---C-CCCCHHHHHHHHHHHHh-c
Q 007193 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAK---S------GKVDAMFEVFHEMVNA---G-IEPNVHTYGALIDGCAK-A 175 (613)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~---~------g~~~~a~~~~~~m~~~---g-~~~~~~~~~~li~~~~~-~ 175 (613)
....++++.++.- ...|+....-|.+ . ...+++.++-...... + ..+....+..-+.--.. .
T Consensus 169 ~v~~iyeRileiP----~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s 244 (577)
T KOG1258|consen 169 RVANIYERILEIP----LHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPS 244 (577)
T ss_pred HHHHHHHHHHhhh----hhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCcc
Confidence 9999999998631 2233333332221 1 1223332222221110 0 00111111111111100 0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC-----CCCCCCHHHHHHHHHHHHhcCCh
Q 007193 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV-----HPVDPDHITIGALMKACANAGQV 250 (613)
Q Consensus 176 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~~~~~~~~~~~ll~~~~~~g~~ 250 (613)
+..+++.....+. ...--..+-......+..-.|+.-.... .-..++..+|..-+.--.+.|+.
T Consensus 245 ~~l~~~~~~l~~~-----------~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~ 313 (577)
T KOG1258|consen 245 KSLTEEKTILKRI-----------VSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDF 313 (577)
T ss_pred chhhHHHHHHHHH-----------HHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccH
Confidence 1111111111111 0111112223333333444444433210 01123456777777777778888
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007193 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI--PDEVFLSALIDFAGHAGKVEAAFEILQ 328 (613)
Q Consensus 251 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~a~~~~~ 328 (613)
+...-+|+...-.- ..-...|-..+.-.-..|+.+-|..++....+-.++ |....+.+.+ +-..|+.+.|..+++
T Consensus 314 ~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq 390 (577)
T KOG1258|consen 314 SRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQ 390 (577)
T ss_pred HHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHH
Confidence 88887777664321 112345555555555557777777776665544332 2222222222 334578888888888
Q ss_pred HHHHCCCCcCHHhHHHHHHHHHhcCCHHHHH---HHHHHHHhCCCCCCHHHHHHHHHH-----HHcCCChhHHHHHHHHH
Q 007193 329 EAKNQGISVGIISYSSLMGACSNAKNWQKAL---ELYEHMKSIKLKPTVSTMNALITA-----LCDGDQLPKTMEVLSDM 400 (613)
Q Consensus 329 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~---~~~~~m~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~l~~~m 400 (613)
.+...- +--...-..-+....+.|..+.+. .++....... -+......+.-- +.-.++.+.|..++.++
T Consensus 391 ~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~--~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~ 467 (577)
T KOG1258|consen 391 RIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK--ENNGILEKLYVKFARLRYKIREDADLARIILLEA 467 (577)
T ss_pred HHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc--cCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 877664 222223333345556777777776 4444443322 222222222222 22357788888888888
Q ss_pred HhCCCCCCHHHHHHHHHHHhhcCC
Q 007193 401 KSLGLCPNTITYSILLVACERKDD 424 (613)
Q Consensus 401 ~~~g~~p~~~t~~~ll~a~~~~g~ 424 (613)
.+. ++++...|..++.-+...+.
T Consensus 468 ~~~-~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 468 NDI-LPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred hhc-CCccHHHHHHHHHHHHhCCc
Confidence 875 56677778888877766653
No 375
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.02 E-value=5.1e+02 Score=29.04 Aligned_cols=79 Identities=10% Similarity=0.151 Sum_probs=47.4
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCC
Q 007193 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSK 106 (613)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 106 (613)
.....|+.++..|+++.|+++-..=+.. -.+....-+.++.+.+.+..|-+++.++ ..+|..+.--+....
T Consensus 360 E~R~vWk~yLd~g~y~kAL~~ar~~p~~-----le~Vl~~qAdf~f~~k~y~~AA~~yA~t----~~~FEEVaLKFl~~~ 430 (911)
T KOG2034|consen 360 EARDVWKTYLDKGEFDKALEIARTRPDA-----LETVLLKQADFLFQDKEYLRAAEIYAET----LSSFEEVALKFLEIN 430 (911)
T ss_pred chHHHHHHHHhcchHHHHHHhccCCHHH-----HHHHHHHHHHHHHhhhHHHHHHHHHHHh----hhhHHHHHHHHHhcC
Confidence 4566899999999999999875433110 1112222344566677788888888776 344555544455555
Q ss_pred ChHHHHHHH
Q 007193 107 DSEGAFQVL 115 (613)
Q Consensus 107 ~~~~A~~~~ 115 (613)
+.+ ++..|
T Consensus 431 ~~~-~L~~~ 438 (911)
T KOG2034|consen 431 QER-ALRTF 438 (911)
T ss_pred CHH-HHHHH
Confidence 544 44433
No 376
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=43.59 E-value=48 Score=17.85 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=9.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 007193 167 ALIDGCAKAGQVAKAFGAYGIM 188 (613)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m 188 (613)
.+...+...++++.|...|+..
T Consensus 6 ~~a~~~~~~~~~~~a~~~~~~~ 27 (34)
T smart00028 6 NLGNAYLKLGDYDEALEYYEKA 27 (34)
T ss_pred HHHHHHHHHhhHHHHHHHHHHH
Confidence 3334444444444444444443
No 377
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.14 E-value=2.9e+02 Score=25.99 Aligned_cols=50 Identities=6% Similarity=0.084 Sum_probs=26.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHccCCHHHHHHHHHHHh
Q 007193 175 AGQVAKAFGAYGIMRSKNVKPDRV---VFNALITACGQSGAVDRAFDVLAEMN 224 (613)
Q Consensus 175 ~g~~~~A~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~m~ 224 (613)
...+++|+.-|++..+..-..-.. ..-.++..+.+.+++++.+..+.++.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 345667777776666542111122 22334555666666666666666654
No 378
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=42.85 E-value=3.6e+02 Score=27.91 Aligned_cols=105 Identities=14% Similarity=0.081 Sum_probs=59.9
Q ss_pred HhcCCHHHHHHHHHHHH---HCCCCcCH-----HhHHHHHHHHHhcCCHHHHHHHHHHHHh-------CCCCCC------
Q 007193 315 GHAGKVEAAFEILQEAK---NQGISVGI-----ISYSSLMGACSNAKNWQKALELYEHMKS-------IKLKPT------ 373 (613)
Q Consensus 315 ~~~g~~~~a~~~~~~~~---~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~~~~~~------ 373 (613)
.-.|++.+|.+++-..- ..|...++ ..+|.|.-.+.+.|.+..+..+|....+ .|++|.
T Consensus 251 Y~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls 330 (696)
T KOG2471|consen 251 YAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLS 330 (696)
T ss_pred HHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehh
Confidence 34566777766654331 11211111 1234444444555666555555555442 343332
Q ss_pred -----HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 007193 374 -----VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421 (613)
Q Consensus 374 -----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 421 (613)
..+||. .-.|...|++-.|.+.|.+.... +..++..|..+..+|..
T Consensus 331 ~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 331 QNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred cccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 233443 23466789999999999887764 56788899998888853
No 379
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=42.47 E-value=66 Score=22.42 Aligned_cols=22 Identities=18% Similarity=0.147 Sum_probs=10.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 007193 167 ALIDGCAKAGQVAKAFGAYGIM 188 (613)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m 188 (613)
.+|.+|...|++++|.+...++
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3444455555555554444444
No 380
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=42.46 E-value=88 Score=25.61 Aligned_cols=22 Identities=9% Similarity=0.102 Sum_probs=10.6
Q ss_pred HHHHHHHHHcCCChHHHHHHHH
Q 007193 95 FNMLMSVCASSKDSEGAFQVLR 116 (613)
Q Consensus 95 ~~~li~~~~~~~~~~~A~~~~~ 116 (613)
|......+-..|++.+|.++|+
T Consensus 102 Ye~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 102 YEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHcCCHHHHHHHHH
Confidence 3333444444555555555543
No 381
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=42.26 E-value=1e+02 Score=24.47 Aligned_cols=36 Identities=17% Similarity=0.161 Sum_probs=22.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007193 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (613)
Q Consensus 133 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 169 (613)
+++.+.+|...++|+++.+.|.+.| +.+...-+.|-
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr 102 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELR 102 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4555667777777777777777776 44444444433
No 382
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=41.79 E-value=86 Score=23.16 Aligned_cols=44 Identities=16% Similarity=0.043 Sum_probs=18.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHH
Q 007193 281 QTGDWEFACSVYDDMTKKGVIPD--EVFLSALIDFAGHAGKVEAAF 324 (613)
Q Consensus 281 ~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~ 324 (613)
...+.++|+..|....+.-..|. -.++..++.+|+..|++.+++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L 63 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREML 63 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555444322211 123444445555555544443
No 383
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=41.78 E-value=1.2e+02 Score=23.00 Aligned_cols=35 Identities=20% Similarity=0.367 Sum_probs=23.9
Q ss_pred cccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 007193 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKG 55 (613)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~ 55 (613)
.|.++.........++..|++++|++.+-++.+.+
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 45666666666677778888888888888887765
No 384
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=41.39 E-value=65 Score=23.75 Aligned_cols=12 Identities=25% Similarity=0.346 Sum_probs=4.6
Q ss_pred HHHHHHhcCChH
Q 007193 240 LMKACANAGQVD 251 (613)
Q Consensus 240 ll~~~~~~g~~~ 251 (613)
++.+|+..|++.
T Consensus 49 l~qA~~e~Gkyr 60 (80)
T PF10579_consen 49 LIQAHMEWGKYR 60 (80)
T ss_pred HHHHHHHHHHHH
Confidence 333334333333
No 385
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=41.25 E-value=8.6e+02 Score=30.94 Aligned_cols=62 Identities=16% Similarity=-0.007 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007193 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368 (613)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (613)
..+|....+.....|.++.|...+-...+.+ . +..+-.........|+...|..++++..+.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3567777788888999999988776666665 2 345556677788899999999999988754
No 386
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=41.22 E-value=2e+02 Score=30.34 Aligned_cols=132 Identities=20% Similarity=0.160 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (613)
Q Consensus 251 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 330 (613)
+.|-.+|..|.... .|-..+.|.-.-.+.-.|+...|...+.......+.-..+....|.....+.|..-.|..++.+.
T Consensus 590 e~~~~~~~~~~~~~-~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~ 668 (886)
T KOG4507|consen 590 EIGSFLFHAINKPN-APIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQA 668 (886)
T ss_pred HHHHHHHHHhcCCC-CCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHH
Confidence 44445555554332 33223333323333445777777777766554332222333444555556666667777777666
Q ss_pred HHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007193 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (613)
Q Consensus 331 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (613)
.... ...+.++..+.++|....+++.|++-|++..+.. +.+.+.-+.|...-|
T Consensus 669 l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 669 LAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred Hhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 5554 3445666777778888888888888888776543 234555555544333
No 387
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=40.50 E-value=2.5e+02 Score=30.17 Aligned_cols=75 Identities=13% Similarity=0.120 Sum_probs=47.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC--CCcCHHhHHHHHHHHHhcCCHH------HHHHHHHHHHhCCCCCCHHHHHHH
Q 007193 309 ALIDFAGHAGKVEAAFEILQEAKNQG--ISVGIISYSSLMGACSNAKNWQ------KALELYEHMKSIKLKPTVSTMNAL 380 (613)
Q Consensus 309 ~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~~~~~~~~~~~~l 380 (613)
+++.+|...|++..+.++++.+...+ -+.=...+|..|+...+.|.++ .|.+.+++.. +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 77888888888888888888776653 2233456777777777777643 3334444333 34566677666
Q ss_pred HHHHHc
Q 007193 381 ITALCD 386 (613)
Q Consensus 381 i~~~~~ 386 (613)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 655443
No 388
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=40.13 E-value=3.7e+02 Score=26.34 Aligned_cols=60 Identities=7% Similarity=0.047 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007193 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206 (613)
Q Consensus 145 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 206 (613)
.-+.++++..+.. +.+...+..+|..+.+..+.+...+.++++.... +-+...|...|..
T Consensus 49 ~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~ 108 (321)
T PF08424_consen 49 RKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDF 108 (321)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHH
Confidence 3345555554442 3445555556666666666666666666666541 1234455544443
No 389
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.52 E-value=4.1e+02 Score=26.75 Aligned_cols=170 Identities=11% Similarity=0.037 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 007193 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVI--PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (613)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 347 (613)
..+.-+.+.|..+|+++.|++.+.+...--.. -....|-.+|..-...|++.....+..+..... +
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~---~--------- 218 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTP---D--------- 218 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCc---h---------
Confidence 45677788888888888888888885442110 012233444444445566666555555544331 0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC------CCCCCHHHHHHHHHHHhh
Q 007193 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL------GLCPNTITYSILLVACER 421 (613)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~~~t~~~ll~a~~~ 421 (613)
+ +.... ..+.+-..++..+.....+ .+..|.+.|-..... =+.|..++....+.|.+-
T Consensus 219 ----------~---~~~~~-q~v~~kl~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAt 282 (466)
T KOG0686|consen 219 ----------A---NENLA-QEVPAKLKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALAT 282 (466)
T ss_pred ----------h---hhhHH-HhcCcchHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhcc
Confidence 0 00000 0012334444444443333 555555544322211 034555555555555554
Q ss_pred cCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhhHHHHHHhhhh
Q 007193 422 KDDVEVGLMLLSQAK-EDGVIPNLVMFKCIIGMCSRRYEKARTLNEH 467 (613)
Q Consensus 422 ~g~~~~a~~~~~~m~-~~g~~p~~~~~~~li~~~~~~~~~a~~~~~~ 467 (613)
.++-+--+.+...-. +.=.+..+....++-+-|.++|+.|.++.+.
T Consensus 283 fdr~~Lk~~vi~n~~Fk~flel~Pqlr~il~~fy~sky~~cl~~L~~ 329 (466)
T KOG0686|consen 283 FDRQDLKLNVIKNESFKLFLELEPQLREILFKFYSSKYASCLELLRE 329 (466)
T ss_pred CCHHHHHHHHHcchhhhhHHhcChHHHHHHHHHhhhhHHHHHHHHHH
Confidence 443332222221111 1112344556666667777777777776554
No 390
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=37.59 E-value=75 Score=30.38 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=24.9
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHH
Q 007193 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130 (613)
Q Consensus 94 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~ 130 (613)
-||..|....+.||+++|+.++++.++.|+.--..+|
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 3567777777777777777777777777754433333
No 391
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=37.56 E-value=1.1e+02 Score=20.55 Aligned_cols=33 Identities=9% Similarity=0.033 Sum_probs=18.4
Q ss_pred HHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 007193 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414 (613)
Q Consensus 380 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 414 (613)
+.-++.+.|++++|.+..+.+.+ +.|+..-...
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~ 39 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHH
Confidence 34456666777777777766666 3565544433
No 392
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=37.07 E-value=1.8e+02 Score=24.55 Aligned_cols=59 Identities=12% Similarity=0.145 Sum_probs=26.4
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007193 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (613)
Q Consensus 259 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 318 (613)
.+.+.|++.++ --..++..+.+.+..-.|.++++++.+.++..+..|....+..+...|
T Consensus 11 ~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 11 RLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 33444444332 233444444444444555555555555544444444333334443333
No 393
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=36.75 E-value=5.2e+02 Score=27.04 Aligned_cols=180 Identities=12% Similarity=0.100 Sum_probs=122.6
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007193 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (613)
Q Consensus 90 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 169 (613)
-|....-+++..+..+...+-...+..+|..-| .+-..|-.++..|... ..+.-..+|+++.+..+. |++.-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 355667788889999999999999999999865 4567788899999888 567788899988877543 555555666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHH
Q 007193 170 DGCAKAGQVAKAFGAYGIMRSKNVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244 (613)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~ 244 (613)
.-|-+ ++.+.+...|.+...+=++. -...|.-|...- ..+.+...++...+... .|...-.+.+.-+-.-|
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~-lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTK-LGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHh-hccchHHHHHHHHHHHh
Confidence 66655 88888888888876542211 122455444321 34566666666666543 34444456666666778
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 007193 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 278 (613)
Q Consensus 245 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 278 (613)
....++++|.+++..+.+.+ ..|.-+-..++..
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~ 248 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIEN 248 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHH
Confidence 88899999999999888776 3343444444433
No 394
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=36.68 E-value=2.1e+02 Score=22.55 Aligned_cols=22 Identities=9% Similarity=0.379 Sum_probs=12.9
Q ss_pred HHHHHHHcCCChhHHHHHHHHH
Q 007193 379 ALITALCDGDQLPKTMEVLSDM 400 (613)
Q Consensus 379 ~li~~~~~~g~~~~A~~l~~~m 400 (613)
.++..|...|+.++|...+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 4455566666777776666654
No 395
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=35.77 E-value=5.3e+02 Score=26.93 Aligned_cols=180 Identities=9% Similarity=0.047 Sum_probs=104.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHH
Q 007193 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238 (613)
Q Consensus 159 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 238 (613)
..|....-+++..+..+..+.-+..+..+|..-| -+...|..++..|..+ ..++-..+++++.+- . -.|++.-.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~--d-fnDvv~~R 136 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEY--D-FNDVVIGR 136 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--c-chhHHHHH
Confidence 3466667777777777777777777777777664 3566777777777777 445666677766542 1 12333333
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHH
Q 007193 239 ALMKACANAGQVDRAREVYKMIHKYNIKG-----TPEVYTIAINCCSQTGDWEFACSVYDDMTKK-GVIPDEVFLSALID 312 (613)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~ 312 (613)
.|...|-+ ++.+.+...|.++..+-++. -...|..+...- ..+.+..+.+...+... |..--.+.+.-+-.
T Consensus 137 eLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~ 213 (711)
T COG1747 137 ELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYK 213 (711)
T ss_pred HHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 44444444 77777777777766553321 123455555421 24555555655555542 33323344555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHH
Q 007193 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348 (613)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 348 (613)
-|....++.+|++++..+.+.. ..|...-..++.-
T Consensus 214 ~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~ 248 (711)
T COG1747 214 KYSENENWTEAIRILKHILEHD-EKDVWARKEIIEN 248 (711)
T ss_pred HhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHH
Confidence 6666777777777777766664 3344444444443
No 396
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=35.46 E-value=2.6e+02 Score=24.68 Aligned_cols=68 Identities=13% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCCc-------CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh
Q 007193 320 VEAAFEILQEAKNQGISV-------GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390 (613)
Q Consensus 320 ~~~a~~~~~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 390 (613)
++.|+.+|+.+.+.--.| ....--..+-.|.+.|.+++|.+++++..+ .|+......-+....+..+.
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd~ 159 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKDP 159 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHcccc
No 397
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=35.25 E-value=4.4e+02 Score=26.79 Aligned_cols=63 Identities=13% Similarity=0.076 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHC--C----C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007193 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNA--G----I-EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190 (613)
Q Consensus 128 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g----~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 190 (613)
++...|++.++-.|++..|+++++.+.-. + + .-.+.++-.+.-+|.-.+++.+|.+.|.....
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888888888888887665311 1 1 22455677777788888899999998888764
No 398
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=34.81 E-value=1.5e+02 Score=31.28 Aligned_cols=57 Identities=11% Similarity=0.051 Sum_probs=24.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007193 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190 (613)
Q Consensus 133 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 190 (613)
|.+...+.|....|..++.+..... .....++-++.++|....+++.|++.|++..+
T Consensus 648 la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~ 704 (886)
T KOG4507|consen 648 LANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALK 704 (886)
T ss_pred HHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHh
Confidence 3334444444444444444433322 12233344444444444555555555544443
No 399
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=34.34 E-value=73 Score=30.45 Aligned_cols=36 Identities=19% Similarity=0.363 Sum_probs=19.3
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHH
Q 007193 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412 (613)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 412 (613)
|+..|..-.+.|++++|+.++++..+.|+.--..+|
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 445555555556666666666665555544333333
No 400
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=33.93 E-value=3.4e+02 Score=29.19 Aligned_cols=91 Identities=19% Similarity=0.208 Sum_probs=59.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHccCCHH------HHHHHHHHHhhCCCCCCCCHHHHH
Q 007193 167 ALIDGCAKAGQVAKAFGAYGIMRSK--NVKPDRVVFNALITACGQSGAVD------RAFDVLAEMNAEVHPVDPDHITIG 238 (613)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~------~a~~~~~~m~~~~~~~~~~~~~~~ 238 (613)
+|+.+|..+|++..+.++++.+... |-+.=...+|.-|+...+.|.++ .|.+++++.. +.-|..||.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~-----ln~d~~t~a 107 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR-----LNGDSLTYA 107 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh-----cCCcchHHH
Confidence 7889999999999999999988754 33333556788888888888754 4444554443 456777887
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 007193 239 ALMKACANAGQVDRAREVYKMIHK 262 (613)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~ 262 (613)
.++.+-..--+-....-++.....
T Consensus 108 ll~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 108 LLCQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHHHhhcChHhHHhccHHHHHHHH
Confidence 777655443333333444444433
No 401
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=33.85 E-value=71 Score=22.26 Aligned_cols=31 Identities=19% Similarity=0.479 Sum_probs=23.1
Q ss_pred cchhhhHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007193 23 HDVSEQLHSYNRLIRQGRISECIDLLEDMER 53 (613)
Q Consensus 23 ~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~ 53 (613)
||+.....+...|++.|++++|.+.+.++..
T Consensus 21 HD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 21 HDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4555666777788889999999888887765
No 402
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=32.86 E-value=1.9e+02 Score=22.04 Aligned_cols=65 Identities=12% Similarity=0.253 Sum_probs=37.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCC
Q 007193 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKD 107 (613)
Q Consensus 35 l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 107 (613)
|++.-+++ .+++.+.++|++.... .-. .-......+.+.++++.++...+.+|..+..++-..+.
T Consensus 16 Lv~~l~~~---~v~~~L~~~gvlt~~~-~~~----I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 16 LAKELVLD---ELLIHLLQKDILTDSM-AES----IMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred HHHHCCHH---HHHHHHHHcCCCCHHH-HHH----HHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 34444443 4677778888754332 111 11222345677777777777777777777777755443
No 403
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=32.49 E-value=4.8e+02 Score=25.40 Aligned_cols=55 Identities=20% Similarity=0.145 Sum_probs=31.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHccCCHHHHHHHHHHHh
Q 007193 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF---NALITACGQSGAVDRAFDVLAEMN 224 (613)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~m~ 224 (613)
|.-+..+.|+..+|.+.|+++.+. .|=...+ ..||.++....-+.+...++.+..
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYD 338 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYD 338 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333344567888888888777654 2322222 346667666665555555555443
No 404
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=32.35 E-value=2.1e+02 Score=25.36 Aligned_cols=30 Identities=13% Similarity=0.082 Sum_probs=12.6
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 007193 372 PTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (613)
Q Consensus 372 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 401 (613)
|+...|..++..+...|+.++|.+...++.
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444444444444444444433
No 405
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=32.22 E-value=6e+02 Score=26.47 Aligned_cols=243 Identities=9% Similarity=0.104 Sum_probs=122.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC------CHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHhcCChHH
Q 007193 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSG------AVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDR 252 (613)
Q Consensus 180 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g------~~~~a~~~~~~m~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~ 252 (613)
....+|++.... -|+...|+..|..|...- .+.....+++..... .+..++ ...|..+.-.++......
T Consensus 300 ~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~-~~l~~~~~~~ys~~~l~~~t~~~~r- 375 (568)
T KOG2396|consen 300 RCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHEL-KLLSECLYKQYSVLLLCLNTLNEAR- 375 (568)
T ss_pred HHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh-cccccchHHHHHHHHHHHhccchHh-
Confidence 334566666543 455566666666654432 233444555554443 233333 345555555555544332
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHH--HHHH
Q 007193 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTG-DWE-FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK-VEAA--FEIL 327 (613)
Q Consensus 253 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~-~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~a--~~~~ 327 (613)
.+-..+...++..+...|-.-+....... +++ .-.++|......-..+-...|++.. .++ +... ..++
T Consensus 376 --~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii 448 (568)
T KOG2396|consen 376 --EVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLII 448 (568)
T ss_pred --HHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHH
Confidence 22222222334444555555444444221 222 1122233333322222333344333 122 1111 1223
Q ss_pred HHHHHCCCCcCHHh-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--cCCChhHHHHHHHHHHh-C
Q 007193 328 QEAKNQGISVGIIS-YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC--DGDQLPKTMEVLSDMKS-L 403 (613)
Q Consensus 328 ~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~l~~~m~~-~ 403 (613)
..+...+ .++..+ -+.+++.+.+.|-..+|..++..+.... +|+...|..+|..-. ...+..-+.++++.|.. -
T Consensus 449 ~a~~s~~-~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~f 526 (568)
T KOG2396|consen 449 SALLSVI-GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREF 526 (568)
T ss_pred HHHHHhc-CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHh
Confidence 3333333 344443 4667788888888888998888887653 566777777765422 12226667777777665 3
Q ss_pred CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 404 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
| .|+..|.-.+.--...|..+.+-.++.++.+
T Consensus 527 g--~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 527 G--ADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred C--CChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 4 5666666666655667777766666665554
No 406
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=32.20 E-value=4.9e+02 Score=25.47 Aligned_cols=67 Identities=10% Similarity=0.030 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007193 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHK 262 (613)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 262 (613)
...+|..+.+.+.+.|.++.|...+..+........+ +..+.-.-+...-..|+..+|...++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456777778888888888888887777642111111 222333344555667777888777776655
No 407
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.17 E-value=1.8e+02 Score=21.44 Aligned_cols=25 Identities=12% Similarity=0.275 Sum_probs=15.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCC
Q 007193 133 LITTCAKSGKVDAMFEVFHEMVNAG 157 (613)
Q Consensus 133 li~~~~~~g~~~~a~~~~~~m~~~g 157 (613)
+++.+.+|.-.++|+++.+.|.+.|
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 4455566666666666666666665
No 408
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.79 E-value=8.1e+02 Score=27.85 Aligned_cols=55 Identities=20% Similarity=0.198 Sum_probs=34.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHH----HHHH-HHHHhhhHHHHHHHHHHHhCC
Q 007193 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVY----HARF-FNVCKSQKAIKEAFRFFKLVP 88 (613)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~----~~~l-~~~~~~~~~~~~A~~~~~~~~ 88 (613)
...|++..++++|..+-+.....+ |..... +... +-....++++++|.++|.++.
T Consensus 314 i~~lL~~k~fe~ai~L~e~~~~~~--p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~ 373 (877)
T KOG2063|consen 314 IQDLLQEKSFEEAISLAEILDSPN--PKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSE 373 (877)
T ss_pred HHHHHHhhhHHHHHHHHhccCCCC--hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 345678888999999887766544 322211 1111 112345788999999998765
No 409
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=30.45 E-value=2.5e+02 Score=21.42 Aligned_cols=53 Identities=13% Similarity=0.057 Sum_probs=29.1
Q ss_pred HcCCChhHHHHHHHHHHh----CCCCCC--H--HHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 385 CDGDQLPKTMEVLSDMKS----LGLCPN--T--ITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 385 ~~~g~~~~A~~l~~~m~~----~g~~p~--~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
.+.|++.+|.+.+.+..+ .+..+. . .....+.......|+.++|.+.+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 356666666555544432 222221 1 2222334456678888888888887764
No 410
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=30.01 E-value=8.4e+02 Score=27.48 Aligned_cols=194 Identities=14% Similarity=0.045 Sum_probs=108.7
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCC-------HHHHHHHHHH-HHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHH
Q 007193 245 ANAGQVDRAREVYKMIHKYNIKGT-------PEVYTIAINC-CSQTGDWEFACSVYDDMTKK----GVIPDEVFLSALID 312 (613)
Q Consensus 245 ~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~----g~~p~~~~~~~li~ 312 (613)
....++++|..+..++...-..|+ ...|+.+-.. ....|+++.|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 346788999998887755422222 1234444322 33568889999888876653 23345566777778
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHH---H--HHHHHhcCCH--HHHHHHHHHHHhCCC--C----CCHHHHHH
Q 007193 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSS---L--MGACSNAKNW--QKALELYEHMKSIKL--K----PTVSTMNA 379 (613)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---l--i~~~~~~g~~--~~A~~~~~~m~~~~~--~----~~~~~~~~ 379 (613)
+..-.|++++|..+.++..+..-.-+...+.. + ...+...|+. .+....|........ + +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 88889999999999888766532333333322 2 2335566733 333344444432110 1 12334455
Q ss_pred HHHHHHc-CCChhHHHHHHHHHHhCCCCCCHHH--HHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 007193 380 LITALCD-GDQLPKTMEVLSDMKSLGLCPNTIT--YSILLVACERKDDVEVGLMLLSQAKED 438 (613)
Q Consensus 380 li~~~~~-~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (613)
+..++.+ .+...++..-++.-......|-... +..+.......|++++|.....++...
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 5555554 1222233333333222222222222 235667788899999999999888754
No 411
>PRK09857 putative transposase; Provisional
Probab=29.89 E-value=4.5e+02 Score=25.37 Aligned_cols=66 Identities=12% Similarity=0.133 Sum_probs=36.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 007193 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196 (613)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 196 (613)
+..++....+.++.++..++++.+.+. .+......-++..-+.+.|.-++++++..+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 445555555566666666666666544 122333333455555556666666666677766665444
No 412
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=29.68 E-value=2.5e+02 Score=21.21 Aligned_cols=43 Identities=21% Similarity=0.390 Sum_probs=28.9
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 007193 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155 (613)
Q Consensus 113 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (613)
++|+.....|+..|+.+|..+++.+.-.=.++...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 6677777777777777777777766555556666666666653
No 413
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=29.62 E-value=4.9e+02 Score=24.58 Aligned_cols=85 Identities=13% Similarity=0.031 Sum_probs=39.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH----cCCCCchHHH--HHHHHHHHh-----hhHHHHHHHHHHHhC--CCCCHHHHHH
Q 007193 31 SYNRLIRQGRISECIDLLEDMER----KGLLDMDKVY--HARFFNVCK-----SQKAIKEAFRFFKLV--PNPTLSTFNM 97 (613)
Q Consensus 31 ~~~~l~~~g~~~~A~~l~~~m~~----~~~~~~~~~~--~~~l~~~~~-----~~~~~~~A~~~~~~~--~~~~~~~~~~ 97 (613)
-...|.+.|+...|.++---+.+ .+...+.... ...++.... ...-.+.|++.-+.. +.-|+.....
T Consensus 16 Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~ 95 (260)
T PF04190_consen 16 GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHL 95 (260)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHH
T ss_pred HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHH
Confidence 33456677777777666544432 2332222221 111222221 112234444443222 2346777777
Q ss_pred HHHHHHcCCChHHHHHHH
Q 007193 98 LMSVCASSKDSEGAFQVL 115 (613)
Q Consensus 98 li~~~~~~~~~~~A~~~~ 115 (613)
+...+.+.+++.+|...|
T Consensus 96 ~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 96 LAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp HHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHhhccHHHHHHHH
Confidence 888888888888777655
No 414
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=29.57 E-value=4.1e+02 Score=23.72 Aligned_cols=14 Identities=29% Similarity=0.297 Sum_probs=6.3
Q ss_pred CCHHHHHHHHHHHH
Q 007193 318 GKVEAAFEILQEAK 331 (613)
Q Consensus 318 g~~~~a~~~~~~~~ 331 (613)
|+++.|...++-|.
T Consensus 135 ~~~~~Ae~~~~~ME 148 (204)
T COG2178 135 GSFEEAERFLKFME 148 (204)
T ss_pred ccHHHHHHHHHHHH
Confidence 44444444444443
No 415
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=29.55 E-value=1.1e+02 Score=17.01 Aligned_cols=17 Identities=24% Similarity=0.208 Sum_probs=12.9
Q ss_pred CCHHHHHHHHHHHHHcC
Q 007193 39 GRISECIDLLEDMERKG 55 (613)
Q Consensus 39 g~~~~A~~l~~~m~~~~ 55 (613)
|+.+.|..+|+++....
T Consensus 1 ~~~~~~r~i~e~~l~~~ 17 (33)
T smart00386 1 GDIERARKIYERALEKF 17 (33)
T ss_pred CcHHHHHHHHHHHHHHC
Confidence 46778888888888765
No 416
>PHA02875 ankyrin repeat protein; Provisional
Probab=29.21 E-value=6.2e+02 Score=25.66 Aligned_cols=75 Identities=17% Similarity=0.203 Sum_probs=31.7
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHccCCH
Q 007193 138 AKSGKVDAMFEVFHEMVNAGIEPNVHT--YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV--VFNALITACGQSGAV 213 (613)
Q Consensus 138 ~~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~ 213 (613)
++.|+.+-+. .+.+.|..|+... ..+.+...++.|+.+-+ +.+.+.|..|+.. ...+.+...+..|+.
T Consensus 10 ~~~g~~~iv~----~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 10 ILFGELDIAR----RLLDIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHhCCHHHHH----HHHHCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 4455554333 3334555554432 23344445555655422 3333344444322 111233344455555
Q ss_pred HHHHHHH
Q 007193 214 DRAFDVL 220 (613)
Q Consensus 214 ~~a~~~~ 220 (613)
+.+..++
T Consensus 82 ~~v~~Ll 88 (413)
T PHA02875 82 KAVEELL 88 (413)
T ss_pred HHHHHHH
Confidence 5444444
No 417
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=28.88 E-value=2.5e+02 Score=21.05 Aligned_cols=61 Identities=10% Similarity=0.133 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHH
Q 007193 45 IDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEG 110 (613)
Q Consensus 45 ~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 110 (613)
..+++.+.++|++..... -..-......+.|.++++.++.....+|.++.+++-..|...-
T Consensus 19 ~~v~~~L~~~~Vlt~~~~-----e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~L 79 (84)
T cd08326 19 KYLWDHLLSRGVFTPDMI-----EEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDL 79 (84)
T ss_pred HHHHHHHHhcCCCCHHHH-----HHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHH
Confidence 346777777776543211 1111233446677777777777777777777777766665443
No 418
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=28.79 E-value=3.3e+02 Score=22.30 Aligned_cols=43 Identities=12% Similarity=0.283 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHH
Q 007193 110 GAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHE 152 (613)
Q Consensus 110 ~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~ 152 (613)
.+.++|..|...|+... ..-|......+...|++++|.++|..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66666666666655433 44555666666666666666666653
No 419
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=28.65 E-value=8.9e+02 Score=27.31 Aligned_cols=86 Identities=12% Similarity=0.115 Sum_probs=42.6
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHHH-HHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHH
Q 007193 139 KSGKVDAMFEVFHEMVNAGIEPNV-------HTYGALIDG-CAKAGQVAKAFGAYGIMRSK----NVKPDRVVFNALITA 206 (613)
Q Consensus 139 ~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~-~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~li~~ 206 (613)
...++++|..+..++...--.|+. ..|+.|-.. ....|+++.|.++-+..... -..+..+.+..+..+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 456667776666665432112211 123333222 12346666666665555432 223344455555566
Q ss_pred HHccCCHHHHHHHHHHHh
Q 007193 207 CGQSGAVDRAFDVLAEMN 224 (613)
Q Consensus 207 ~~~~g~~~~a~~~~~~m~ 224 (613)
..-.|++++|..+..+..
T Consensus 507 ~~~~G~~~~Al~~~~~a~ 524 (894)
T COG2909 507 AHIRGELTQALALMQQAE 524 (894)
T ss_pred HHHhchHHHHHHHHHHHH
Confidence 666677776666655443
No 420
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=28.63 E-value=1.5e+02 Score=20.90 Aligned_cols=28 Identities=18% Similarity=0.293 Sum_probs=11.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007193 307 LSALIDFAGHAGKVEAAFEILQEAKNQG 334 (613)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (613)
++.++..+++-.-.+.++..+.+..+.|
T Consensus 11 ~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 11 SNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3333333333333444444444444433
No 421
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=28.29 E-value=6.3e+02 Score=25.47 Aligned_cols=53 Identities=13% Similarity=0.113 Sum_probs=26.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHh--cCCHHHHHHHHHHHHHC
Q 007193 280 SQTGDWEFACSVYDDMTKKGVIPDEV--FLSALIDFAGH--AGKVEAAFEILQEAKNQ 333 (613)
Q Consensus 280 ~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~--~g~~~~a~~~~~~~~~~ 333 (613)
.+.+++..|.++|+.+... +.++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3556666666666666654 332222 23333333332 34455666666655443
No 422
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=28.28 E-value=1.1e+02 Score=21.62 Aligned_cols=29 Identities=14% Similarity=0.226 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 007193 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAG 157 (613)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g 157 (613)
.++.++..+++..-.++++..+.+..+.|
T Consensus 10 l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 10 LSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34444444444444444444444444444
No 423
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=28.00 E-value=3.1e+02 Score=21.75 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=18.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007193 307 LSALIDFAGHAGKVEAAFEILQEAKN 332 (613)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (613)
|..++..|...|..++|++++..+..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 66666677777777777777776655
No 424
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=27.75 E-value=2.8e+02 Score=21.13 Aligned_cols=21 Identities=10% Similarity=0.257 Sum_probs=11.6
Q ss_pred HHHHHHcCChhHHHHHHHHHH
Q 007193 134 ITTCAKSGKVDAMFEVFHEMV 154 (613)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~ 154 (613)
.......|+.++|.+.+++.+
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHH
Confidence 334445566666666665544
No 425
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=27.60 E-value=5.5e+02 Score=24.57 Aligned_cols=146 Identities=15% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHCC--------CCcCHHhHHHHHHHH-HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHH
Q 007193 326 ILQEAKNQG--------ISVGIISYSSLMGAC-SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 396 (613)
Q Consensus 326 ~~~~~~~~~--------~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 396 (613)
++..+.+.| ++.|...+|+|+.-- .+-..++++.+-.++-. |-.--...|..+..-|++-++.+.+.+.
T Consensus 60 lYkyL~E~~n~kt~a~~ikfD~~~~n~l~kkneeki~Elde~i~~~eedn--gE~e~~ea~~n~aeyY~qi~D~~ng~~~ 137 (412)
T COG5187 60 LYKYLAEKGNPKTSASVIKFDRGRMNTLLKKNEEKIEELDERIREKEEDN--GETEGSEADRNIAEYYCQIMDIQNGFEW 137 (412)
T ss_pred HHHHHHhccCCcccchheehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcc--cchHHHHHHHHHHHHHHHHhhhhhHHHH
Q ss_pred HHHHHh----CCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhhHHHHHHh-hh
Q 007193 397 LSDMKS----LGLCPNT-ITYSILLVACERKDDVEVGLMLLSQAKEDGVI----PNLVMFKCIIGMCSRRYEKARTL-NE 466 (613)
Q Consensus 397 ~~~m~~----~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~----p~~~~~~~li~~~~~~~~~a~~~-~~ 466 (613)
.++..+ .|.+.|. .+-..+.-.|....-+++-++..+.|++.|.+ -...+|..+..|-.|++.+|+.+ .+
T Consensus 138 ~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d 217 (412)
T COG5187 138 MRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSD 217 (412)
T ss_pred HHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHH
Q ss_pred hhhcccC
Q 007193 467 HVLSFNS 473 (613)
Q Consensus 467 ~~~~~~~ 473 (613)
.+.+|.+
T Consensus 218 ~l~tF~S 224 (412)
T COG5187 218 ILPTFES 224 (412)
T ss_pred Hhccccc
No 426
>PRK10941 hypothetical protein; Provisional
Probab=26.50 E-value=5.7e+02 Score=24.33 Aligned_cols=56 Identities=14% Similarity=-0.012 Sum_probs=24.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 007193 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224 (613)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 224 (613)
+-.+|.+.++++.|+++.+.+.... +.|..-+.--.-.|.+.|.+..|..=++...
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl 242 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFV 242 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 3334444555555555555554431 2222233333333444455555544444443
No 427
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=26.14 E-value=6.3e+02 Score=24.73 Aligned_cols=62 Identities=13% Similarity=0.101 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007193 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (613)
Q Consensus 251 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 314 (613)
+.-..++++..+.+ +.+...+..++..+.+..+.++..+.++++...... +...|...|...
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~ 109 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFR 109 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHH
Confidence 34445555555553 455566666666666666666666666666665332 445555555443
No 428
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=25.97 E-value=2.8e+02 Score=29.83 Aligned_cols=43 Identities=14% Similarity=0.052 Sum_probs=20.7
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 007193 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154 (613)
Q Consensus 112 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 154 (613)
....+.+..+-.-.+...-..++..|.+.|-.+.|.++.+.+-
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~ 432 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILG 432 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3333444333222344455566666666666666666665554
No 429
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=25.67 E-value=2.7e+02 Score=22.18 Aligned_cols=25 Identities=24% Similarity=0.468 Sum_probs=14.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC
Q 007193 310 LIDFAGHAGKVEAAFEILQEAKNQG 334 (613)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~~~~~~ 334 (613)
+++...++...++|+++.+.|.+.|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 3444455566666666666666665
No 430
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=25.58 E-value=2.1e+02 Score=20.74 Aligned_cols=33 Identities=12% Similarity=0.246 Sum_probs=18.4
Q ss_pred ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 007193 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (613)
Q Consensus 249 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 282 (613)
+.+.|..++..+.... +.++..||++...+.++
T Consensus 12 DtEmA~~mL~DLr~de-kRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDE-KRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchh-hcChHHHHHHHHHHHHc
Confidence 4455666666555443 44556777666555443
No 431
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=25.28 E-value=1.3e+02 Score=30.64 Aligned_cols=102 Identities=13% Similarity=0.051 Sum_probs=56.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHcCCCh
Q 007193 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT---LSTFNMLMSVCASSKDS 108 (613)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~ 108 (613)
.|.+.+.+.++.|+.++.+.++.+ |+.+.+.+.-..++.+.+++..|+.=+.+.++.+ ...|--=..++.+.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 455667888888888888888877 5555555544444455555555555444444322 11222222344455556
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007193 109 EGAFQVLRLVQEAGLKADCKLYTTLITTC 137 (613)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 137 (613)
.+|+..|+.... +.|+..-....+.-|
T Consensus 89 ~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 89 KKALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 666666665554 355555555555444
No 432
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=25.17 E-value=3.5e+02 Score=25.29 Aligned_cols=23 Identities=4% Similarity=0.073 Sum_probs=14.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 007193 29 LHSYNRLIRQGRISECIDLLEDM 51 (613)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~l~~~m 51 (613)
+.....+...|+..+|+.-|..=
T Consensus 14 ~ki~rl~l~~~~~~~Av~q~~~H 36 (247)
T PF11817_consen 14 FKICRLYLWLNQPTEAVRQFRAH 36 (247)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHH
Confidence 33444556778888887777543
No 433
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=25.12 E-value=5.6e+02 Score=23.79 Aligned_cols=91 Identities=14% Similarity=0.191 Sum_probs=39.7
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-C-----------CCCCHHHHHHHH
Q 007193 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK-G-----------VIPDEVFLSALI 311 (613)
Q Consensus 244 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g-----------~~p~~~~~~~li 311 (613)
|.+..+..--.++.+-....+++-+.....+++ +...|+..+|+..++.-... | -.|.+.....++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 344444333344444444444443333333333 23455555555544433211 1 123444444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCc
Q 007193 312 DFAGHAGKVEAAFEILQEAKNQGISV 337 (613)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~~~~~~ 337 (613)
..|. .+++++|.+++.++.+.|+.|
T Consensus 247 ~~~~-~~~~~~A~~il~~lw~lgysp 271 (333)
T KOG0991|consen 247 QACL-KRNIDEALKILAELWKLGYSP 271 (333)
T ss_pred HHHH-hccHHHHHHHHHHHHHcCCCH
Confidence 4433 245555555555555555544
No 434
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=24.47 E-value=2.2e+02 Score=20.25 Aligned_cols=33 Identities=18% Similarity=0.291 Sum_probs=24.4
Q ss_pred cccchhhhHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007193 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMER 53 (613)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~ 53 (613)
+|......+.-+|.|+.+|++++|..+-..-++
T Consensus 2 lpGad~l~~~~F~~l~~~g~y~eAA~~AA~sP~ 34 (66)
T PF13838_consen 2 LPGADDLYVQQFNELFSQGQYEEAAKVAANSPR 34 (66)
T ss_dssp -SS-HHHHHHHHHHHHHTT-HHHHHHHHHHSGG
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc
Confidence 455556678889999999999999988777664
No 435
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=24.23 E-value=2.6e+02 Score=32.00 Aligned_cols=69 Identities=19% Similarity=0.247 Sum_probs=50.8
Q ss_pred CcccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCC
Q 007193 20 NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN 89 (613)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 89 (613)
.|.++.. ....|..+-....+.++.++|..|.+.|+.+....++......+.+.+.+.+|..+|....+
T Consensus 74 ~Y~nD~R-fl~~~~~~~~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq 142 (974)
T KOG1166|consen 74 RYRNDPR-FLILWCSLELREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQ 142 (974)
T ss_pred hccccHH-HHHHHHhHHHHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 34444444466788899999999999988777777888788888888889999999887643
No 436
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=23.50 E-value=4.3e+02 Score=22.98 Aligned_cols=59 Identities=8% Similarity=0.056 Sum_probs=27.4
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007193 119 QEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178 (613)
Q Consensus 119 ~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 178 (613)
.+.|++.+..-. .++..+...++.-.|.++++.+.+.+...+..|----|..+.+.|-+
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 344544433222 33333334444555666666665555444444433444555555543
No 437
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=23.44 E-value=7.7e+02 Score=24.84 Aligned_cols=55 Identities=11% Similarity=0.111 Sum_probs=35.2
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHh--cCCHHHHHHHHHHHHhC
Q 007193 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVH--TYGALIDGCAK--AGQVAKAFGAYGIMRSK 191 (613)
Q Consensus 136 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~~~--~g~~~~A~~~~~~m~~~ 191 (613)
.+.+.+++..|.++|+.+... ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344777888888888888775 444443 34445555543 45677888888776644
No 438
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=23.38 E-value=4.2e+02 Score=23.04 Aligned_cols=36 Identities=6% Similarity=-0.035 Sum_probs=15.5
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCC
Q 007193 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354 (613)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 354 (613)
+.-.|.++++.+.+.+..++..|...-++.+...|-
T Consensus 40 ~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 40 GAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred CCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 333444444444444433444443333444444443
No 439
>PRK12356 glutaminase; Reviewed
Probab=23.12 E-value=2.7e+02 Score=27.10 Aligned_cols=54 Identities=13% Similarity=0.097 Sum_probs=24.9
Q ss_pred CCChhHHHHHHHHHHhCCCCC-C-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCC
Q 007193 387 GDQLPKTMEVLSDMKSLGLCP-N-TITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442 (613)
Q Consensus 387 ~g~~~~A~~l~~~m~~~g~~p-~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p 442 (613)
.|.-..|+..+ |+..|.-+ | ..+.......|+-....+..-.+..-+...|+.|
T Consensus 167 t~~RNrAlA~~--lks~g~i~~d~~~~Ld~Yf~qCsi~vt~~dLA~~~a~LAn~G~~P 222 (319)
T PRK12356 167 TNFHNRAIAWL--LYSYGRLYCDPMEACDVYTRQCSTLVTARDLATMGATLAAGGVNP 222 (319)
T ss_pred hhHHHHHHHHH--HHHCCCCCCCHHHHHHHHHHHhccceeHHHHHHHHHHHHcCCcCC
Confidence 33344444333 55555332 2 2334444455555555555444444444455555
No 440
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=23.03 E-value=1.7e+03 Score=28.65 Aligned_cols=311 Identities=11% Similarity=0.043 Sum_probs=149.9
Q ss_pred HHHHHhhhHHHHHHHHHHHhCC----CCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 007193 67 FFNVCKSQKAIKEAFRFFKLVP----NPT--LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140 (613)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~~~~----~~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 140 (613)
+..+....+.+..|+-.+++-. +.+ ...+-.+...|+..++++...-+...-.. .|+ .+ .-|-.....
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l~-~qil~~e~~ 1462 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--LY-QQILEHEAS 1462 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--HH-HHHHHHHhh
Confidence 3444556677888888887732 111 12233334478888888877766653111 222 22 234445677
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHccCCHHHHHHH
Q 007193 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL-ITACGQSGAVDRAFDV 219 (613)
Q Consensus 141 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~a~~~ 219 (613)
|++..|..-|+.+.+.+ ++....++-++...-..|.++.+.-..+-.... ..+....|+++ +.+--+.++++.....
T Consensus 1463 g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred ccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 88888888888888774 333556666666555667777666655555433 23333344433 2344566666666555
Q ss_pred HHHHhhCCCCCCCCHHHHHHH--HHHHHhcC--ChHHHHHHHHHHHhcCCCC---------CHHHHHHHHHHHHhcCCHH
Q 007193 220 LAEMNAEVHPVDPDHITIGAL--MKACANAG--QVDRAREVYKMIHKYNIKG---------TPEVYTIAINCCSQTGDWE 286 (613)
Q Consensus 220 ~~~m~~~~~~~~~~~~~~~~l--l~~~~~~g--~~~~A~~~~~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~ 286 (613)
+. .. +..+|.+. .....+.. +.-.-.+..+.+.+.-+.| -...|..++....-...-.
T Consensus 1541 l~--~~-------n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~ 1611 (2382)
T KOG0890|consen 1541 LS--DR-------NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELEN 1611 (2382)
T ss_pred hh--cc-------cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHH
Confidence 54 11 11122222 22222111 1111112222222211100 0123333333322211111
Q ss_pred HHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHH-HHHHC----CC-CcCHHhHHHHHHHHHhcCC
Q 007193 287 FACSVYDDMTKKGVIPDE------VFLSALIDFAGHAGKVEAAFEILQ-EAKNQ----GI-SVGIISYSSLMGACSNAKN 354 (613)
Q Consensus 287 ~a~~~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~~a~~~~~-~~~~~----~~-~~~~~~~~~li~~~~~~g~ 354 (613)
. .+... +..++. --|..-+..-....+..+-.--++ .+... +. .--..+|-...+...+.|.
T Consensus 1612 ~----~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~ 1685 (2382)
T KOG0890|consen 1612 S----IEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGH 1685 (2382)
T ss_pred H----HHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhccc
Confidence 1 11111 111111 111111111111111111111111 11111 11 1224578888888888999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 007193 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (613)
Q Consensus 355 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 403 (613)
++.|....-...+.+ .| ..+--....+-+.|+...|+.++++..+.
T Consensus 1686 ~q~A~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1686 LQRAQNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 999987766665544 23 34455666777899999999999987753
No 441
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=22.72 E-value=8.1e+02 Score=24.82 Aligned_cols=63 Identities=11% Similarity=0.079 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007193 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAG--IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190 (613)
Q Consensus 128 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 190 (613)
..+.-+.+.|..+|+++.|.+.|.+...-- .+..+..|-.+|..-.-.|+|......-.+..+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 456777888888999999999888854321 122344455566666667777766666665554
No 442
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=22.59 E-value=8.3e+02 Score=24.88 Aligned_cols=64 Identities=16% Similarity=0.037 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC----CC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007193 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHP----VD-PDHITIGALMKACANAGQVDRAREVYKMIH 261 (613)
Q Consensus 198 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~----~~-~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 261 (613)
.+...|++.++-.||+..|+++++.+.-...+ ++ -.+.++--+.-+|.-.+++.+|.+.|..+.
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777788888888887765432111 11 123344555666777778888888877654
No 443
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=22.39 E-value=8.4e+02 Score=24.88 Aligned_cols=202 Identities=12% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHH-----HHHH
Q 007193 112 FQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI--EPNVHTYGALIDGCAKAGQVA-----KAFG 183 (613)
Q Consensus 112 ~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~-----~A~~ 183 (613)
...+.....-..+|| ...|+.+.+.=-++.--+...++.+.|....- .|-..-..++|..||+.++++ .-+.
T Consensus 39 ~~~W~~~L~V~~K~d~l~~wd~iydLp~Q~~lr~DC~~~~d~l~n~ee~~v~vv~dlES~iTfYCK~Rn~~Y~~d~gWi~ 118 (669)
T KOG3636|consen 39 KSDWMRLLGVSMKPNPLDDWDQIYDLPNQCALRNDCRKLADGLKNKEEDKVPVVSDLESFITFYCKKRNMDYIKDIGWIT 118 (669)
T ss_pred HHHHHHHhcccCCCCchhhHHHHhCCchhhHHHHHHHHHHhhcCCchhhccchhHhhhhHhhhhhhccCCcccccccHHH
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHH--------HHccCCHHHHHHHHHHHhh-------CCCCCCCCHHHHHHHHHHHHhcC
Q 007193 184 AYGIMRSKNVKPDRVVFNALITA--------CGQSGAVDRAFDVLAEMNA-------EVHPVDPDHITIGALMKACANAG 248 (613)
Q Consensus 184 ~~~~m~~~g~~p~~~~~~~li~~--------~~~~g~~~~a~~~~~~m~~-------~~~~~~~~~~~~~~ll~~~~~~g 248 (613)
+++.+.... -|...+||..... |...|++-..++++-+.-. ....+.||.++.|.+...++..-
T Consensus 119 lL~pl~~L~-lprsd~fN~F~ai~~kYIPkdcrpkg~~Fh~FRLLlqYHdPelc~~LdtkkitPd~Y~lnWf~sLFas~~ 197 (669)
T KOG3636|consen 119 LLEPLLLLN-LPRSDEFNVFFAITTKYIPKDCRPKGQIFHLFRLLLQYHDPELCNHLDTKKITPDMYTLNWFASLFASSM 197 (669)
T ss_pred HHHHHHHhc-CCcchhhhhhHhhhhcccCCCCCCCCccchHHHHHHHhcCHHHhhhhhccccCchHHHHHHHHHHHHHhh
Q ss_pred ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH--------HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007193 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCC--------SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (613)
Q Consensus 249 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~--------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 315 (613)
..+-...+++...+.+ .|-.+.+-++|-.- .+...-++++++++.|...--.-|..-+-+|...|+
T Consensus 198 Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 198 STEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQLSVEDVPDFFSLAQYYS 271 (669)
T ss_pred hHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhcccccchhHHHHHHHHh
No 444
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=22.37 E-value=4.5e+02 Score=24.50 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=10.2
Q ss_pred HHHHHHhhhHHHHHHHHHHH
Q 007193 66 RFFNVCKSQKAIKEAFRFFK 85 (613)
Q Consensus 66 ~l~~~~~~~~~~~~A~~~~~ 85 (613)
.+.+.+...|+..+|++-|.
T Consensus 15 ki~rl~l~~~~~~~Av~q~~ 34 (247)
T PF11817_consen 15 KICRLYLWLNQPTEAVRQFR 34 (247)
T ss_pred HHHHHHHhCCCHHHHHHHHH
Confidence 33444445555555555544
No 445
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=22.36 E-value=7.1e+02 Score=24.04 Aligned_cols=190 Identities=12% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHcCCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcC-----ChhHHHHHHHH---------HHHCCCCCC--
Q 007193 99 MSVCASSKDSEGAFQVLRLVQEA-GLKADCKLYTTLITTCAKSG-----KVDAMFEVFHE---------MVNAGIEPN-- 161 (613)
Q Consensus 99 i~~~~~~~~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~---------m~~~g~~~~-- 161 (613)
+-++++.|..+ ...+++.+... .-+++...|..++..+.... ..+.....|+. +.+.|..+.
T Consensus 45 ~~al~~~g~~~-~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 123 (324)
T PF11838_consen 45 LFALARAGRLS-YSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPG 123 (324)
T ss_dssp HHHHHHTTSS--HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--
T ss_pred HHHHHHcCCCC-HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCccc
Q ss_pred HHHHHHHHHHH-HhcCC-----HHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC
Q 007193 162 VHTYGALIDGC-AKAGQ-----VAKAFGAYGIMRSKNV----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 231 (613)
Q Consensus 162 ~~~~~~li~~~-~~~g~-----~~~A~~~~~~m~~~g~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 231 (613)
......+++.. ....- .+.|.+.|+.....+. ..+...-..++....+.|+.+.-..+++.... .
T Consensus 124 ~~~~~~~lr~~~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~-----~ 198 (324)
T PF11838_consen 124 EDHNDRLLRALLLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN-----S 198 (324)
T ss_dssp SCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT-----T
T ss_pred ccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc-----c
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHH
Q 007193 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC-SQTGDWEFACSVYDD 294 (613)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~a~~~~~~ 294 (613)
++...-..++.+.+...+.+...++++.+...+..++......+.... ......+.+.+.+..
T Consensus 199 ~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 199 TSPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp STHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHH
No 446
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=22.33 E-value=4.8e+02 Score=21.99 Aligned_cols=61 Identities=16% Similarity=0.155 Sum_probs=31.0
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007193 116 RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (613)
Q Consensus 116 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 177 (613)
..+.+.|++++.. -..++..+.+.++.-.|.++|+.+.+.+...+..|--.-++.+...|-
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 3444555544432 234555555555556666666666665544444443333455555543
No 447
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=22.12 E-value=5.4e+02 Score=24.94 Aligned_cols=71 Identities=13% Similarity=0.210 Sum_probs=54.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----------cCCHHHH
Q 007193 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ----------SGAVDRA 216 (613)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----------~g~~~~a 216 (613)
.++|+.|.+.++.|.-.++.-+.-.+.+.=.+..++.+++.+.... .-|..|+..||. .|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-----~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-----QRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-----hhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 5788888888889988888877777888888899999999987642 225555555543 4888888
Q ss_pred HHHHHH
Q 007193 217 FDVLAE 222 (613)
Q Consensus 217 ~~~~~~ 222 (613)
.++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 888765
No 448
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=22.11 E-value=7.3e+02 Score=24.07 Aligned_cols=47 Identities=9% Similarity=0.009 Sum_probs=32.0
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhH
Q 007193 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK 75 (613)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~ 75 (613)
.....|..+..++++.+.++-+++....+ |.-...|.+..+++.+.|
T Consensus 101 d~~~~~~~~~~~~~~~~Ll~~~E~sl~~~--pfWLDgq~~~~qal~~lG 147 (301)
T TIGR03362 101 DRVADYQELLAQADWAALLQRVEQSLSLA--PFWLDGQRLSAQALERLG 147 (301)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhC--chhhHHHHHHHHHHHHCC
Confidence 34556677778888888888888777765 555555666666666655
No 449
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.92 E-value=1.1e+03 Score=26.14 Aligned_cols=100 Identities=15% Similarity=0.111 Sum_probs=58.5
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007193 101 VCASSKDSEGAFQVLRLVQEAGLKA---DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (613)
Q Consensus 101 ~~~~~~~~~~A~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 177 (613)
-+.+.+.+++|+.+.+... |..| -.......|..+.-.|++++|-...-.|.. -+..-|.--+.-++..++
T Consensus 365 Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 365 WLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccccc
Confidence 3556667777776655443 2233 234566677777777888887777777763 356667666666666666
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 007193 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (613)
Q Consensus 178 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 209 (613)
...... -+....-..+...|..++..+..
T Consensus 439 l~~Ia~---~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 439 LTDIAP---YLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cchhhc---cCCCCCcccCchHHHHHHHHHHH
Confidence 544332 23322222345566666666655
No 450
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=21.19 E-value=1.4e+02 Score=17.63 Aligned_cols=23 Identities=9% Similarity=0.107 Sum_probs=15.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHH
Q 007193 424 DVEVGLMLLSQAKEDGVIPNLVMFK 448 (613)
Q Consensus 424 ~~~~a~~~~~~m~~~g~~p~~~~~~ 448 (613)
.++.|+.+|++.+. +.|++.+|-
T Consensus 2 E~dRAR~IyeR~v~--~hp~~k~Wi 24 (32)
T PF02184_consen 2 EFDRARSIYERFVL--VHPEVKNWI 24 (32)
T ss_pred hHHHHHHHHHHHHH--hCCCchHHH
Confidence 46778888888776 346666554
No 451
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=21.03 E-value=9.2e+02 Score=24.79 Aligned_cols=75 Identities=13% Similarity=0.223 Sum_probs=53.1
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007193 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456 (613)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 456 (613)
...|+.-|...|...+|...++++--- +--..+.+.+++.+..+.|+-..-+.+++..-+.|+ .|-+.|-..|.|
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf~R 586 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhhhh
Confidence 456788889999999999888775321 112456788899999999998877777777766554 344555555544
No 452
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=21.01 E-value=2.8e+02 Score=21.97 Aligned_cols=20 Identities=5% Similarity=0.003 Sum_probs=9.1
Q ss_pred CHHHHHHHHHHHHHcCCCCC
Q 007193 424 DVEVGLMLLSQAKEDGVIPN 443 (613)
Q Consensus 424 ~~~~a~~~~~~m~~~g~~p~ 443 (613)
..-.|.++++.+.+.+...+
T Consensus 15 ~~~sa~ei~~~l~~~~~~i~ 34 (116)
T cd07153 15 GHLTAEEIYERLRKKGPSIS 34 (116)
T ss_pred CCCCHHHHHHHHHhcCCCCC
Confidence 33344555555554443333
No 453
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=20.89 E-value=6.8e+02 Score=23.25 Aligned_cols=74 Identities=12% Similarity=0.222 Sum_probs=33.0
Q ss_pred HHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-C-----------CCCCHHHHHHHHHHHHcCCChhHHHHHHH
Q 007193 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI-K-----------LKPTVSTMNALITALCDGDQLPKTMEVLS 398 (613)
Q Consensus 331 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~-----------~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 398 (613)
...+++.+..-..+++ +...|++.+|..-++.-... | -.|.+.....++..|. .+++++|.+.+.
T Consensus 186 k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~ 262 (333)
T KOG0991|consen 186 KAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILA 262 (333)
T ss_pred HHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHH
Confidence 3334444433343333 44566666666655543220 0 0344444444443332 334555555555
Q ss_pred HHHhCCCCC
Q 007193 399 DMKSLGLCP 407 (613)
Q Consensus 399 ~m~~~g~~p 407 (613)
++-+.|+.|
T Consensus 263 ~lw~lgysp 271 (333)
T KOG0991|consen 263 ELWKLGYSP 271 (333)
T ss_pred HHHHcCCCH
Confidence 555555444
No 454
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=20.71 E-value=5.8e+02 Score=26.28 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007193 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (613)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (613)
.+++-.++++.+.+.| .+| ....-|+.|.+.+++++|..-+++-.+
T Consensus 69 ~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~ 114 (480)
T TIGR01503 69 LLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKESIK 114 (480)
T ss_pred cHHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHHHHHHHhhhh
Confidence 3445555555555554 122 333445556666666666655555443
No 455
>PRK00971 glutaminase; Provisional
Probab=20.49 E-value=3.1e+02 Score=26.62 Aligned_cols=75 Identities=15% Similarity=0.173 Sum_probs=35.5
Q ss_pred CCChhHHHHHHHHHHhCCCCC-C-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC----------HHHHHHHHHHH
Q 007193 387 GDQLPKTMEVLSDMKSLGLCP-N-TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN----------LVMFKCIIGMC 454 (613)
Q Consensus 387 ~g~~~~A~~l~~~m~~~g~~p-~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~----------~~~~~~li~~~ 454 (613)
.|.-..|+..+ |+..|.-+ | ..+......-|+-....+..-.+..-+...|+.|. ...-++++-.|
T Consensus 163 t~~RN~Ala~~--lks~g~i~~d~~~~Ld~Yf~qCsi~vt~~dLA~~~a~LAn~G~~P~tg~~vl~~~~~r~v~s~M~Tc 240 (307)
T PRK00971 163 HADRNAAIAYL--MKSFGNIENDVETVLDTYFHQCALEMSCVDLARAGLFLANGGVSPHTGERVVSPRQARQVNALMLTC 240 (307)
T ss_pred ccHHHHHHHHH--HHHCCCCCCCHHHHHHHHHHHhccceeHHHHHHHHHHHHcCCcCCCCCCeecCHHHHHHHHHHHHHc
Confidence 33334444333 45544333 3 23444555555555555555555544445565552 12223344333
Q ss_pred HhhHHHHHHh
Q 007193 455 SRRYEKARTL 464 (613)
Q Consensus 455 ~~~~~~a~~~ 464 (613)
+ .|+.+|++
T Consensus 241 G-mYD~SG~f 249 (307)
T PRK00971 241 G-MYDASGEF 249 (307)
T ss_pred C-CccchHHH
Confidence 3 37777765
No 456
>PF13934 ELYS: Nuclear pore complex assembly
Probab=20.16 E-value=6.8e+02 Score=22.99 Aligned_cols=119 Identities=10% Similarity=0.016 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHH
Q 007193 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348 (613)
Q Consensus 269 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 348 (613)
+..|...+.++-...+ .+-.+.++.+....+.|+.... ++.++...|+.+.|..+++...-. ..+......++..
T Consensus 76 p~~~~~~~~g~W~LD~-~~~~~A~~~L~~ps~~~~~~~~--Il~~L~~~~~~~lAL~y~~~~~p~--l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 76 PPKYIKFIQGFWLLDH-GDFEEALELLSHPSLIPWFPDK--ILQALLRRGDPKLALRYLRAVGPP--LSSPEALTLYFVA 150 (226)
T ss_pred CHHHHHHHHHHHHhCh-HhHHHHHHHhCCCCCCcccHHH--HHHHHHHCCChhHHHHHHHhcCCC--CCCHHHHHHHHHH
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----cCCChhHHHHH
Q 007193 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC----DGDQLPKTMEV 396 (613)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~l 396 (613)
..++.+.+|..+-+...+ .-....+..++..+. +.+..++-+.+
T Consensus 151 -La~~~v~EAf~~~R~~~~---~~~~~l~e~l~~~~~~~~~~~~~~~~Ll~L 198 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPD---ELRRRLFEQLLEHCLEECARSGRLDELLSL 198 (226)
T ss_pred -HHcCCHHHHHHHHHhCch---hhhHHHHHHHHHHHHHHhhhhhHHHHHHhC
No 457
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=20.15 E-value=7.4e+02 Score=23.38 Aligned_cols=25 Identities=8% Similarity=0.114 Sum_probs=16.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHH
Q 007193 95 FNMLMSVCASSKDSEGAFQVLRLVQ 119 (613)
Q Consensus 95 ~~~li~~~~~~~~~~~A~~~~~~m~ 119 (613)
.+.+++.+.+.+....|..+.+.+.
T Consensus 85 L~~iL~~lL~~~~~~~a~~i~~~y~ 109 (258)
T PF07064_consen 85 LHHILRHLLRRNLDEEALEIASKYR 109 (258)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHhc
Confidence 4556666666667777777766665
No 458
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.10 E-value=3.7e+02 Score=19.92 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=14.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC
Q 007193 310 LIDFAGHAGKVEAAFEILQEAKNQG 334 (613)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~~~~~~ 334 (613)
+++.+.++.-.++|+++++.+.+.|
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 3444555556666666666666665
No 459
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=20.09 E-value=8.3e+02 Score=23.94 Aligned_cols=94 Identities=15% Similarity=0.074 Sum_probs=48.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCCHHHHHHHHH-HHHcCCChhHHHHHHHHHHhCCCCCCH----HH
Q 007193 341 SYSSLMGACSNAKNWQKALELYEHMK----SIKLKPTVSTMNALIT-ALCDGDQLPKTMEVLSDMKSLGLCPNT----IT 411 (613)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t 411 (613)
.+-....-||+-|+-+.|.+.+.... ..|.+-|++.+..-+. .|..+.-..+-++..+.+.+.|-..+. .+
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKv 185 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKV 185 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHH
Confidence 34445556677777776666655443 2355555554443222 233333345555555666666544433 23
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHH
Q 007193 412 YSILLVACERKDDVEVGLMLLSQAK 436 (613)
Q Consensus 412 ~~~ll~a~~~~g~~~~a~~~~~~m~ 436 (613)
|..+- |....++.+|-.+|-...
T Consensus 186 Y~Gly--~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 186 YQGLY--CMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHH--HHHHHhHHHHHHHHHHHc
Confidence 43332 344556777777665544
Done!