Query 007193
Match_columns 613
No_of_seqs 757 out of 3951
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 19:32:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007193.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007193hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.2E-35 4.3E-40 319.6 43.3 416 27-456 82-562 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.7E-33 5.8E-38 303.0 42.6 402 33-450 125-590 (597)
3 4g26_A Pentatricopeptide repea 100.0 1.3E-30 4.5E-35 269.3 25.7 203 253-455 9-221 (501)
4 4g26_A Pentatricopeptide repea 100.0 5.7E-30 2E-34 264.6 25.5 188 235-422 27-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 1.6E-26 5.4E-31 234.5 48.0 377 33-423 7-387 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 2.7E-25 9.1E-30 225.4 46.5 362 69-443 7-371 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 1.5E-21 5.2E-26 201.8 39.0 332 90-434 24-405 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 5.8E-21 2E-25 197.4 40.1 306 124-443 23-361 (450)
9 2gw1_A Mitochondrial precursor 99.9 4E-21 1.4E-25 202.2 37.3 402 30-445 11-483 (514)
10 2gw1_A Mitochondrial precursor 99.9 1.1E-20 3.6E-25 198.9 37.6 370 31-412 45-485 (514)
11 3fp2_A TPR repeat-containing p 99.9 5.1E-20 1.7E-24 195.0 37.0 390 32-438 32-491 (537)
12 3ieg_A DNAJ homolog subfamily 99.9 1.1E-17 3.8E-22 166.8 41.1 313 91-437 2-334 (359)
13 3fp2_A TPR repeat-containing p 99.8 1.1E-17 3.8E-22 176.9 41.1 379 62-456 26-474 (537)
14 3ieg_A DNAJ homolog subfamily 99.8 3.1E-17 1E-21 163.6 41.8 312 127-473 3-337 (359)
15 3hym_B Cell division cycle pro 99.8 3E-17 1E-21 161.7 32.2 266 129-402 24-298 (330)
16 3hym_B Cell division cycle pro 99.8 5.6E-17 1.9E-21 159.7 33.3 292 90-390 20-321 (330)
17 2ooe_A Cleavage stimulation fa 99.8 2.2E-15 7.6E-20 158.9 44.8 394 36-437 23-491 (530)
18 2xm6_A Protein corresponding t 99.8 1.4E-14 4.9E-19 151.1 50.0 365 44-441 26-435 (490)
19 2xm6_A Protein corresponding t 99.8 1.9E-14 6.5E-19 150.1 49.1 338 38-405 56-434 (490)
20 1fch_A Peroxisomal targeting s 99.8 4.2E-17 1.4E-21 163.5 25.3 295 75-398 39-354 (368)
21 1fch_A Peroxisomal targeting s 99.8 3.8E-17 1.3E-21 163.8 23.3 300 37-363 37-354 (368)
22 3spa_A Mtrpol, DNA-directed RN 99.8 4.8E-19 1.7E-23 187.6 7.4 150 92-248 127-286 (1134)
23 2ooe_A Cleavage stimulation fa 99.8 3.5E-14 1.2E-18 149.7 44.8 397 48-453 2-472 (530)
24 3spa_A Mtrpol, DNA-directed RN 99.7 3.4E-18 1.2E-22 181.3 12.4 118 305-422 128-249 (1134)
25 4eqf_A PEX5-related protein; a 99.7 4.6E-16 1.6E-20 155.8 27.0 267 90-363 63-351 (365)
26 4eqf_A PEX5-related protein; a 99.7 2.5E-16 8.5E-21 157.8 23.6 264 165-434 68-352 (365)
27 1b89_A Protein (clathrin heavy 99.7 1.3E-16 4.6E-21 157.0 20.8 290 29-361 6-304 (449)
28 3mkr_A Coatomer subunit epsilo 99.7 1.8E-15 6.2E-20 145.8 28.5 254 32-299 6-265 (291)
29 3cv0_A Peroxisome targeting si 99.7 1.6E-15 5.4E-20 149.1 27.4 278 91-399 20-311 (327)
30 1b89_A Protein (clathrin heavy 99.7 2.7E-17 9.4E-22 161.9 13.7 283 72-396 14-304 (449)
31 3cv0_A Peroxisome targeting si 99.7 2.5E-15 8.5E-20 147.7 27.2 275 129-436 23-313 (327)
32 3mkr_A Coatomer subunit epsilo 99.7 1.3E-14 4.5E-19 139.7 26.6 248 137-402 9-263 (291)
33 1xi4_A Clathrin heavy chain; a 99.7 1.9E-12 6.4E-17 142.1 45.9 378 26-462 986-1375(1630)
34 4g1t_A Interferon-induced prot 99.7 4.2E-14 1.4E-18 146.9 31.6 213 61-279 51-291 (472)
35 4g1t_A Interferon-induced prot 99.7 7E-14 2.4E-18 145.1 30.2 210 30-245 52-292 (472)
36 1xi4_A Clathrin heavy chain; a 99.6 1.1E-11 3.8E-16 136.1 43.2 313 32-395 1056-1376(1630)
37 3uq3_A Heat shock protein STI1 99.6 4.3E-13 1.5E-17 126.6 25.4 92 307-400 142-233 (258)
38 3uq3_A Heat shock protein STI1 99.6 4.4E-13 1.5E-17 126.5 24.2 224 93-332 6-235 (258)
39 3e4b_A ALGK; tetratricopeptide 99.6 3.9E-13 1.3E-17 138.2 25.5 344 29-404 7-388 (452)
40 2pl2_A Hypothetical conserved 99.6 4.9E-13 1.7E-17 122.8 22.6 57 307-365 121-177 (217)
41 2pl2_A Hypothetical conserved 99.6 4.3E-13 1.5E-17 123.2 22.0 199 232-436 3-212 (217)
42 2ho1_A Type 4 fimbrial biogene 99.5 6.4E-12 2.2E-16 118.2 27.8 201 92-298 37-238 (252)
43 2vq2_A PILW, putative fimbrial 99.5 1.2E-11 4E-16 113.9 28.0 201 91-297 7-210 (225)
44 2vq2_A PILW, putative fimbrial 99.5 9.8E-12 3.3E-16 114.4 27.1 202 126-332 7-210 (225)
45 2ho1_A Type 4 fimbrial biogene 99.5 1.4E-11 4.9E-16 115.8 28.3 201 127-333 37-238 (252)
46 2h6f_A Protein farnesyltransfe 99.5 7.4E-12 2.5E-16 124.7 26.7 247 92-348 97-362 (382)
47 1xnf_A Lipoprotein NLPI; TPR, 99.5 5.7E-13 2E-17 127.2 17.8 216 75-298 19-244 (275)
48 3u4t_A TPR repeat-containing p 99.5 7.3E-12 2.5E-16 119.3 25.5 159 134-297 10-170 (272)
49 3u4t_A TPR repeat-containing p 99.5 5.5E-12 1.9E-16 120.1 24.5 234 165-402 6-249 (272)
50 2q7f_A YRRB protein; TPR, prot 99.5 2.1E-12 7.4E-17 120.6 21.0 202 91-299 22-223 (243)
51 1ouv_A Conserved hypothetical 99.5 1.2E-10 4.1E-15 111.0 33.5 222 162-403 6-251 (273)
52 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.4E-12 4.8E-17 124.4 19.8 222 104-333 17-244 (275)
53 1ouv_A Conserved hypothetical 99.5 9.7E-11 3.3E-15 111.7 32.2 224 196-439 5-252 (273)
54 2h6f_A Protein farnesyltransfe 99.5 1.1E-11 3.6E-16 123.5 26.2 248 127-384 97-363 (382)
55 2q7f_A YRRB protein; TPR, prot 99.5 3.4E-12 1.2E-16 119.2 21.2 61 341-402 161-221 (243)
56 3e4b_A ALGK; tetratricopeptide 99.5 9E-12 3.1E-16 127.9 23.9 342 67-440 9-389 (452)
57 4e6h_A MRNA 3'-END-processing 99.4 2.6E-09 8.8E-14 113.6 40.7 404 28-438 65-570 (679)
58 3sf4_A G-protein-signaling mod 99.4 1.1E-11 3.9E-16 125.4 18.7 204 91-295 8-253 (406)
59 3vtx_A MAMA; tetratricopeptide 99.4 1.1E-10 3.7E-15 103.9 22.7 165 234-402 5-169 (184)
60 3sf4_A G-protein-signaling mod 99.4 1.9E-11 6.4E-16 123.8 18.9 281 124-437 6-335 (406)
61 2ond_A Cleavage stimulation fa 99.4 9.6E-10 3.3E-14 106.8 30.2 217 109-333 33-270 (308)
62 2ond_A Cleavage stimulation fa 99.4 1.1E-09 3.9E-14 106.2 30.3 219 214-438 33-270 (308)
63 4a1s_A PINS, partner of inscut 99.4 2.5E-11 8.5E-16 123.3 19.2 277 129-438 50-372 (411)
64 4a1s_A PINS, partner of inscut 99.4 1.8E-11 6.1E-16 124.4 18.1 236 94-330 50-329 (411)
65 3vtx_A MAMA; tetratricopeptide 99.3 1.7E-10 5.7E-15 102.6 22.0 172 268-445 4-175 (184)
66 3ro2_A PINS homolog, G-protein 99.3 3.5E-11 1.2E-15 118.1 18.8 62 376-437 265-331 (338)
67 4e6h_A MRNA 3'-END-processing 99.3 3E-08 1E-12 105.5 42.1 393 41-439 48-534 (679)
68 3ro2_A PINS homolog, G-protein 99.3 3.8E-11 1.3E-15 117.8 18.3 201 94-295 7-249 (338)
69 3ulq_A Response regulator aspa 99.3 3.1E-10 1E-14 114.1 24.5 231 204-437 110-367 (383)
70 3ulq_A Response regulator aspa 99.3 1.7E-10 6E-15 115.9 22.7 296 102-402 22-367 (383)
71 4abn_A Tetratricopeptide repea 99.3 1.2E-10 4E-15 120.4 20.9 199 161-366 101-319 (474)
72 4abn_A Tetratricopeptide repea 99.3 1.3E-10 4.4E-15 120.1 20.2 216 177-401 83-319 (474)
73 3nf1_A KLC 1, kinesin light ch 99.3 1.6E-11 5.6E-16 119.2 12.4 176 92-297 27-223 (311)
74 3nf1_A KLC 1, kinesin light ch 99.2 3.2E-10 1.1E-14 110.0 17.7 241 196-437 26-306 (311)
75 1hz4_A MALT regulatory protein 99.2 9.8E-09 3.4E-13 102.6 28.0 266 171-437 23-321 (373)
76 3q15_A PSP28, response regulat 99.2 9E-09 3.1E-13 103.1 27.6 229 204-437 108-364 (378)
77 3as5_A MAMA; tetratricopeptide 99.2 2.5E-09 8.6E-14 94.6 20.1 21 414-434 149-169 (186)
78 1hz4_A MALT regulatory protein 99.2 1.4E-08 4.9E-13 101.4 27.4 267 99-365 21-319 (373)
79 3as5_A MAMA; tetratricopeptide 99.2 5.3E-09 1.8E-13 92.5 21.3 59 237-296 45-103 (186)
80 3q15_A PSP28, response regulat 99.2 7.3E-09 2.5E-13 103.8 24.8 231 168-402 107-364 (378)
81 4gyw_A UDP-N-acetylglucosamine 99.1 3.8E-09 1.3E-13 113.7 21.6 165 234-402 9-173 (723)
82 4i17_A Hypothetical protein; T 99.1 1.6E-08 5.4E-13 93.2 21.3 191 235-437 8-208 (228)
83 4i17_A Hypothetical protein; T 99.1 3E-08 1E-12 91.4 22.9 197 90-300 5-211 (228)
84 4gyw_A UDP-N-acetylglucosamine 99.1 7.7E-09 2.6E-13 111.3 20.8 166 91-262 8-173 (723)
85 3edt_B KLC 2, kinesin light ch 99.0 4.6E-09 1.6E-13 100.0 15.3 158 139-296 13-196 (283)
86 3edt_B KLC 2, kinesin light ch 99.0 3.1E-09 1.1E-13 101.2 13.2 229 209-437 13-280 (283)
87 2fo7_A Synthetic consensus TPR 98.9 6.4E-08 2.2E-12 80.2 17.2 127 272-401 4-130 (136)
88 1qqe_A Vesicular transport pro 98.9 4.6E-08 1.6E-12 93.9 18.4 131 236-366 79-226 (292)
89 2fo7_A Synthetic consensus TPR 98.9 8.3E-08 2.9E-12 79.5 17.3 127 95-224 4-130 (136)
90 3mv2_B Coatomer subunit epsilo 98.9 1.1E-07 3.7E-12 89.8 19.3 179 111-298 85-282 (310)
91 2uy1_A Cleavage stimulation fa 98.9 1.4E-06 4.8E-11 89.8 28.8 102 38-156 7-118 (493)
92 1qqe_A Vesicular transport pro 98.9 6.5E-08 2.2E-12 92.9 16.8 207 212-437 32-268 (292)
93 3qky_A Outer membrane assembly 98.9 1.5E-07 5.1E-12 88.7 19.0 99 126-225 14-125 (261)
94 3mv2_B Coatomer subunit epsilo 98.8 1.9E-06 6.4E-11 81.4 26.0 164 233-402 99-281 (310)
95 3dra_A Protein farnesyltransfe 98.8 9.9E-07 3.4E-11 84.1 24.1 237 21-262 28-286 (306)
96 3urz_A Uncharacterized protein 98.8 1.3E-07 4.6E-12 85.6 17.1 192 27-243 6-199 (208)
97 3urz_A Uncharacterized protein 98.8 1.5E-07 5.3E-12 85.1 17.5 73 310-384 60-132 (208)
98 3qky_A Outer membrane assembly 98.8 3.5E-07 1.2E-11 86.1 20.0 185 232-438 13-224 (261)
99 2r5s_A Uncharacterized protein 98.8 8.9E-08 3E-12 84.1 14.5 161 26-189 7-171 (176)
100 2pzi_A Probable serine/threoni 98.8 1.3E-07 4.3E-12 102.2 17.7 169 36-211 402-582 (681)
101 3qou_A Protein YBBN; thioredox 98.8 2.8E-07 9.5E-12 88.1 17.8 155 31-188 123-281 (287)
102 4ga2_A E3 SUMO-protein ligase 98.8 1.3E-07 4.4E-12 80.6 13.4 143 67-212 3-149 (150)
103 3rjv_A Putative SEL1 repeat pr 98.7 2E-06 6.7E-11 78.0 21.4 173 111-299 5-198 (212)
104 3dra_A Protein farnesyltransfe 98.7 8.9E-06 3.1E-10 77.5 26.7 217 108-331 49-285 (306)
105 2pzi_A Probable serine/threoni 98.7 1.6E-07 5.4E-12 101.5 16.3 173 245-424 402-583 (681)
106 3rjv_A Putative SEL1 repeat pr 98.7 2.2E-06 7.4E-11 77.8 20.9 175 253-439 5-198 (212)
107 3qou_A Protein YBBN; thioredox 98.7 5.7E-07 1.9E-11 86.0 17.5 166 124-296 114-282 (287)
108 2r5s_A Uncharacterized protein 98.7 2.2E-07 7.6E-12 81.6 13.3 160 238-401 10-171 (176)
109 2yhc_A BAMD, UPF0169 lipoprote 98.7 2.2E-06 7.4E-11 78.6 19.8 199 127-368 4-213 (225)
110 4ga2_A E3 SUMO-protein ligase 98.6 1.8E-07 6.1E-12 79.7 11.2 139 208-353 8-148 (150)
111 2yhc_A BAMD, UPF0169 lipoprote 98.6 2.7E-06 9.1E-11 78.0 19.8 204 162-404 4-214 (225)
112 2vsy_A XCC0866; transferase, g 98.6 8.1E-07 2.8E-11 94.1 18.2 154 210-369 2-158 (568)
113 2vsy_A XCC0866; transferase, g 98.6 1.3E-06 4.5E-11 92.5 18.9 155 140-300 2-159 (568)
114 1hh8_A P67PHOX, NCF-2, neutrop 98.6 4.2E-06 1.4E-10 75.7 19.0 125 65-191 10-150 (213)
115 2ifu_A Gamma-SNAP; membrane fu 98.5 1.5E-06 5.2E-11 83.9 15.9 229 37-291 3-254 (307)
116 2uy1_A Cleavage stimulation fa 98.5 0.00013 4.3E-09 75.2 30.7 354 37-437 26-412 (493)
117 2ifu_A Gamma-SNAP; membrane fu 98.5 2.5E-06 8.5E-11 82.4 16.4 224 175-430 4-253 (307)
118 3q7a_A Farnesyltransferase alp 98.5 9.1E-05 3.1E-09 71.3 26.6 183 95-284 57-257 (349)
119 1na0_A Designed protein CTPR3; 98.5 6.5E-06 2.2E-10 66.7 15.4 98 92-191 9-106 (125)
120 1hh8_A P67PHOX, NCF-2, neutrop 98.4 2E-05 6.9E-10 71.1 19.7 124 203-333 12-150 (213)
121 3q7a_A Farnesyltransferase alp 98.4 0.00016 5.5E-09 69.6 26.6 174 139-319 66-257 (349)
122 3u3w_A Transcriptional activat 98.4 3.4E-05 1.2E-09 73.8 22.0 125 241-365 82-222 (293)
123 3u3w_A Transcriptional activat 98.4 3.4E-05 1.2E-09 73.7 21.9 162 204-366 82-264 (293)
124 1a17_A Serine/threonine protei 98.4 1.2E-05 4.1E-10 69.1 16.4 128 93-223 14-143 (166)
125 1a17_A Serine/threonine protei 98.4 1.5E-05 5E-10 68.6 16.9 95 237-333 16-110 (166)
126 1na0_A Designed protein CTPR3; 98.4 1.7E-05 5.9E-10 64.1 16.0 93 237-331 12-104 (125)
127 4gco_A Protein STI-1; structur 98.4 1.4E-05 4.7E-10 65.4 15.0 97 93-191 14-110 (126)
128 2qfc_A PLCR protein; TPR, HTH, 98.3 8.6E-05 3E-09 70.9 22.7 167 163-330 76-263 (293)
129 4gco_A Protein STI-1; structur 98.3 1.7E-05 5.7E-10 64.9 15.1 91 240-332 19-109 (126)
130 3gyz_A Chaperone protein IPGC; 98.3 3.8E-06 1.3E-10 71.2 11.4 103 91-197 35-137 (151)
131 2qfc_A PLCR protein; TPR, HTH, 98.3 8.7E-05 3E-09 70.9 22.4 160 239-399 80-262 (293)
132 2c2l_A CHIP, carboxy terminus 98.3 1.9E-06 6.3E-11 82.1 10.4 97 234-332 4-100 (281)
133 2lni_A Stress-induced-phosphop 98.3 1.8E-05 6.1E-10 65.0 15.2 115 234-351 16-130 (133)
134 4f3v_A ESX-1 secretion system 98.3 6E-05 2E-09 70.2 20.0 188 104-299 18-238 (282)
135 2e2e_A Formate-dependent nitri 98.3 7.5E-06 2.6E-10 71.6 13.5 120 316-438 22-144 (177)
136 3dss_A Geranylgeranyl transfer 98.3 0.00028 9.4E-09 67.7 25.0 166 37-207 41-237 (331)
137 2c2l_A CHIP, carboxy terminus 98.3 1.5E-06 5.1E-11 82.7 9.1 97 92-190 4-100 (281)
138 2vyi_A SGTA protein; chaperone 98.3 1.5E-05 5E-10 65.2 14.2 117 92-211 12-128 (131)
139 2vyi_A SGTA protein; chaperone 98.3 2.1E-05 7.2E-10 64.2 14.6 90 240-331 18-107 (131)
140 2lni_A Stress-induced-phosphop 98.3 1.4E-05 4.7E-10 65.7 13.3 99 91-191 15-113 (133)
141 2e2e_A Formate-dependent nitri 98.3 5.4E-06 1.8E-10 72.5 11.3 118 36-156 21-144 (177)
142 3gw4_A Uncharacterized protein 98.3 8.8E-06 3E-10 72.8 12.6 24 413-436 151-174 (203)
143 3gw4_A Uncharacterized protein 98.2 6.4E-06 2.2E-10 73.7 11.3 98 92-189 26-134 (203)
144 4f3v_A ESX-1 secretion system 98.2 4.1E-05 1.4E-09 71.3 16.4 197 246-452 18-249 (282)
145 1elw_A TPR1-domain of HOP; HOP 98.2 8.3E-05 2.8E-09 59.3 16.1 98 92-191 4-101 (118)
146 2vgx_A Chaperone SYCD; alterna 98.2 8.3E-06 2.8E-10 69.0 10.0 52 243-295 30-81 (148)
147 3gyz_A Chaperone protein IPGC; 98.2 2.4E-05 8.1E-10 66.2 12.7 60 236-296 72-131 (151)
148 3upv_A Heat shock protein STI1 98.2 5.2E-05 1.8E-09 61.8 14.1 97 93-191 5-101 (126)
149 1p5q_A FKBP52, FK506-binding p 98.1 6.4E-05 2.2E-09 73.4 16.9 87 270-358 197-283 (336)
150 2vgx_A Chaperone SYCD; alterna 98.1 1E-05 3.5E-10 68.4 9.7 97 92-190 21-117 (148)
151 1p5q_A FKBP52, FK506-binding p 98.1 4.7E-05 1.6E-09 74.4 15.7 145 269-437 147-293 (336)
152 1elw_A TPR1-domain of HOP; HOP 98.1 0.00012 4.1E-09 58.3 15.6 12 247-258 17-28 (118)
153 2kck_A TPR repeat; tetratricop 98.1 4.7E-05 1.6E-09 60.1 12.9 99 91-191 5-106 (112)
154 3dss_A Geranylgeranyl transfer 98.1 0.0053 1.8E-07 58.8 28.8 188 104-298 41-267 (331)
155 3upv_A Heat shock protein STI1 98.1 7.4E-05 2.5E-09 60.8 14.0 60 340-400 39-98 (126)
156 2fbn_A 70 kDa peptidylprolyl i 98.1 1.2E-05 4E-10 71.9 9.0 137 74-213 17-172 (198)
157 4gcn_A Protein STI-1; structur 98.1 5.1E-05 1.8E-09 62.1 12.1 104 341-447 10-119 (127)
158 4gcn_A Protein STI-1; structur 98.1 6.9E-05 2.4E-09 61.3 12.8 105 93-200 9-119 (127)
159 2xcb_A PCRH, regulatory protei 98.1 5.2E-05 1.8E-09 63.4 12.3 97 93-191 19-115 (142)
160 1elr_A TPR2A-domain of HOP; HO 98.0 4.6E-05 1.6E-09 62.2 11.7 108 93-203 5-118 (131)
161 2xcb_A PCRH, regulatory protei 98.0 7.3E-05 2.5E-09 62.5 12.9 95 237-333 21-115 (142)
162 3q49_B STIP1 homology and U bo 98.0 0.00012 4.3E-09 60.3 14.3 99 90-190 7-105 (137)
163 3q49_B STIP1 homology and U bo 98.0 0.00014 4.8E-09 60.0 13.9 97 234-332 9-105 (137)
164 2kck_A TPR repeat; tetratricop 98.0 8.7E-05 3E-09 58.5 12.2 98 339-438 6-106 (112)
165 3sz7_A HSC70 cochaperone (SGT) 98.0 0.00018 6.3E-09 61.7 14.9 99 338-438 10-108 (164)
166 3sz7_A HSC70 cochaperone (SGT) 98.0 0.00016 5.6E-09 62.0 14.2 99 91-191 10-108 (164)
167 4b4t_Q 26S proteasome regulato 98.0 0.0001 3.5E-09 74.8 14.8 147 26-188 5-161 (434)
168 2dba_A Smooth muscle cell asso 97.9 0.00036 1.2E-08 58.2 15.8 95 163-262 29-127 (148)
169 2fbn_A 70 kDa peptidylprolyl i 97.9 0.00017 5.6E-09 64.3 14.3 61 271-332 90-150 (198)
170 2dba_A Smooth muscle cell asso 97.9 0.00039 1.3E-08 58.0 15.8 98 196-298 27-128 (148)
171 1hxi_A PEX5, peroxisome target 97.9 0.00011 3.8E-09 59.4 11.6 95 95-191 20-114 (121)
172 1elr_A TPR2A-domain of HOP; HO 97.9 0.00013 4.4E-09 59.4 11.9 25 342-366 82-106 (131)
173 4b4t_Q 26S proteasome regulato 97.8 0.001 3.5E-08 67.2 19.6 165 272-436 58-243 (434)
174 1wao_1 Serine/threonine protei 97.8 0.00021 7.3E-09 73.3 14.2 116 245-363 17-134 (477)
175 1hxi_A PEX5, peroxisome target 97.8 0.00021 7.3E-09 57.7 11.4 88 242-331 25-112 (121)
176 2xev_A YBGF; tetratricopeptide 97.7 0.00072 2.5E-08 54.9 13.4 92 98-191 8-105 (129)
177 3ro3_A PINS homolog, G-protein 97.7 0.00028 9.5E-09 59.8 11.1 97 341-437 51-157 (164)
178 2xev_A YBGF; tetratricopeptide 97.7 0.0016 5.3E-08 52.8 15.2 62 271-332 41-104 (129)
179 3ro3_A PINS homolog, G-protein 97.7 0.00029 9.8E-09 59.7 11.0 95 236-330 11-115 (164)
180 1wao_1 Serine/threonine protei 97.7 0.00035 1.2E-08 71.7 13.4 119 100-221 14-134 (477)
181 3rkv_A Putative peptidylprolyl 97.6 0.00065 2.2E-08 58.0 12.2 62 375-437 64-125 (162)
182 3k9i_A BH0479 protein; putativ 97.6 6.3E-05 2.2E-09 60.4 5.3 85 352-437 3-89 (117)
183 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.00097 3.3E-08 68.0 15.4 121 236-358 270-404 (457)
184 3rkv_A Putative peptidylprolyl 97.6 0.00076 2.6E-08 57.6 12.4 98 93-191 12-126 (162)
185 1ihg_A Cyclophilin 40; ppiase 97.6 0.00074 2.5E-08 66.6 13.8 120 237-358 226-360 (370)
186 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.001 3.5E-08 67.8 14.9 97 92-190 268-379 (457)
187 1ihg_A Cyclophilin 40; ppiase 97.5 0.00083 2.8E-08 66.3 13.3 137 94-254 225-361 (370)
188 3k9i_A BH0479 protein; putativ 97.5 0.00018 6E-09 57.7 7.0 85 105-190 3-89 (117)
189 1dce_A Protein (RAB geranylger 97.4 0.012 4.2E-07 61.4 21.5 172 107-285 44-242 (567)
190 2if4_A ATFKBP42; FKBP-like, al 97.4 0.00077 2.6E-08 65.7 10.4 147 93-263 180-328 (338)
191 2if4_A ATFKBP42; FKBP-like, al 97.3 0.00065 2.2E-08 66.2 9.7 145 271-437 181-327 (338)
192 2hr2_A Hypothetical protein; a 97.3 0.0034 1.2E-07 52.6 11.9 94 95-189 14-129 (159)
193 2hr2_A Hypothetical protein; a 97.3 0.0042 1.4E-07 52.0 12.4 92 240-331 17-129 (159)
194 1dce_A Protein (RAB geranylger 97.3 0.018 6E-07 60.2 20.2 169 250-424 45-241 (567)
195 2l6j_A TPR repeat-containing p 97.2 0.00035 1.2E-08 55.0 5.3 89 92-183 4-99 (111)
196 1klx_A Cysteine rich protein B 97.2 0.01 3.5E-07 48.9 14.6 14 353-366 75-88 (138)
197 1klx_A Cysteine rich protein B 97.2 0.013 4.5E-07 48.2 15.1 110 249-369 10-127 (138)
198 1na3_A Designed protein CTPR2; 97.2 0.004 1.4E-07 46.5 10.7 62 94-156 11-72 (91)
199 3n71_A Histone lysine methyltr 97.1 0.002 6.7E-08 65.8 10.9 124 314-437 319-463 (490)
200 3n71_A Histone lysine methyltr 97.1 0.002 6.8E-08 65.8 10.9 86 245-330 320-419 (490)
201 2kat_A Uncharacterized protein 97.1 0.0037 1.3E-07 49.5 9.9 77 111-189 4-80 (115)
202 1na3_A Designed protein CTPR2; 97.1 0.0073 2.5E-07 45.0 11.0 62 236-298 11-72 (91)
203 2kat_A Uncharacterized protein 97.0 0.0053 1.8E-07 48.5 10.2 60 235-295 20-79 (115)
204 2l6j_A TPR repeat-containing p 97.0 0.0031 1.1E-07 49.3 8.8 62 236-298 6-67 (111)
205 1zu2_A Mitochondrial import re 96.9 0.0027 9.2E-08 53.1 7.7 98 351-453 14-133 (158)
206 1zu2_A Mitochondrial import re 96.8 0.003 1E-07 52.8 7.4 59 144-205 63-132 (158)
207 3ma5_A Tetratricopeptide repea 96.6 0.012 4.1E-07 45.2 9.3 64 233-297 6-69 (100)
208 3ma5_A Tetratricopeptide repea 96.6 0.013 4.4E-07 45.0 9.0 62 92-154 7-68 (100)
209 3ly7_A Transcriptional activat 96.6 0.098 3.4E-06 50.3 16.7 74 124-201 274-347 (372)
210 3ly7_A Transcriptional activat 96.4 0.052 1.8E-06 52.2 13.8 63 373-437 276-338 (372)
211 3mkq_A Coatomer beta'-subunit; 95.9 0.14 4.9E-06 56.1 16.5 47 137-189 662-708 (814)
212 3mkq_A Coatomer beta'-subunit; 95.7 0.42 1.4E-05 52.3 19.3 154 101-295 608-762 (814)
213 1pc2_A Mitochondria fission pr 95.6 0.13 4.5E-06 42.4 11.0 96 354-453 13-113 (152)
214 3qwp_A SET and MYND domain-con 95.6 0.054 1.8E-06 54.2 10.6 25 411-435 373-397 (429)
215 3qww_A SET and MYND domain-con 95.6 0.027 9.3E-07 56.3 8.3 85 317-401 311-409 (433)
216 2kc7_A BFR218_protein; tetratr 95.5 0.037 1.3E-06 42.0 7.2 53 102-155 10-63 (99)
217 2kc7_A BFR218_protein; tetratr 95.4 0.098 3.4E-06 39.5 9.2 56 242-298 8-64 (99)
218 3qww_A SET and MYND domain-con 95.4 0.05 1.7E-06 54.4 9.2 84 141-224 312-409 (433)
219 3qwp_A SET and MYND domain-con 95.3 0.15 5.2E-06 51.0 12.6 61 271-331 331-398 (429)
220 3bee_A Putative YFRE protein; 95.0 0.26 8.9E-06 37.0 10.0 67 232-299 4-73 (93)
221 3bee_A Putative YFRE protein; 95.0 0.21 7E-06 37.5 9.5 65 126-191 5-72 (93)
222 3mkq_B Coatomer subunit alpha; 94.7 1 3.5E-05 38.1 13.9 43 174-222 17-59 (177)
223 3mkq_B Coatomer subunit alpha; 94.5 1.9 6.5E-05 36.4 15.4 98 74-188 18-115 (177)
224 1pc2_A Mitochondria fission pr 94.1 0.3 1E-05 40.2 9.1 84 321-408 15-103 (152)
225 1wy6_A Hypothetical protein ST 93.9 1.9 6.6E-05 34.3 14.3 61 308-369 95-155 (172)
226 3u64_A Protein TP_0956; tetrat 93.8 4 0.00014 37.6 19.3 93 213-309 179-282 (301)
227 3u64_A Protein TP_0956; tetrat 93.6 4.4 0.00015 37.4 20.3 94 250-344 179-282 (301)
228 2v5f_A Prolyl 4-hydroxylase su 93.0 1.1 3.7E-05 34.2 10.4 63 236-298 7-75 (104)
229 2v5f_A Prolyl 4-hydroxylase su 92.8 0.5 1.7E-05 36.2 8.2 28 410-437 47-74 (104)
230 4h7y_A Dual specificity protei 92.8 0.76 2.6E-05 37.4 9.1 65 386-451 72-136 (161)
231 4h7y_A Dual specificity protei 91.9 1.5 5E-05 35.8 9.8 113 89-204 10-135 (161)
232 1nzn_A CGI-135 protein, fissio 91.9 1.7 5.7E-05 34.4 10.1 90 351-444 13-107 (126)
233 1wy6_A Hypothetical protein ST 91.2 4.8 0.00017 32.1 15.3 137 175-335 20-156 (172)
234 4ady_A RPN2, 26S proteasome re 90.5 19 0.00066 39.2 19.7 342 32-391 346-723 (963)
235 4b4t_P 26S proteasome regulato 90.0 5.5 0.00019 39.8 14.5 66 18-84 10-79 (445)
236 1nzn_A CGI-135 protein, fissio 89.7 1.7 5.6E-05 34.4 8.2 86 319-408 16-106 (126)
237 1v54_E Cytochrome C oxidase po 88.7 3.1 0.0001 31.1 8.2 65 389-454 25-89 (109)
238 4fhn_B Nucleoporin NUP120; pro 88.2 13 0.00046 42.2 17.7 89 127-217 899-991 (1139)
239 4gns_B Protein CSD3, chitin bi 86.6 2.7 9.1E-05 44.8 9.9 51 349-400 347-397 (754)
240 2ff4_A Probable regulatory pro 86.0 3 0.0001 40.8 9.5 57 166-223 175-231 (388)
241 4gns_B Protein CSD3, chitin bi 84.9 10 0.00035 40.4 13.4 129 237-366 251-398 (754)
242 2ff4_A Probable regulatory pro 84.0 5 0.00017 39.2 10.0 70 272-342 174-248 (388)
243 4b4t_P 26S proteasome regulato 83.8 37 0.0012 33.7 19.0 96 201-296 141-245 (445)
244 4ady_A RPN2, 26S proteasome re 83.4 57 0.0019 35.7 24.3 267 137-419 384-671 (963)
245 2y69_E Cytochrome C oxidase su 83.1 16 0.00054 29.0 10.2 63 391-454 70-132 (152)
246 2p58_C Putative type III secre 82.9 12 0.0004 27.9 8.7 87 106-201 21-107 (116)
247 3lpz_A GET4 (YOR164C homolog); 81.4 36 0.0012 32.0 20.9 192 22-261 9-214 (336)
248 3o48_A Mitochondria fission 1 80.6 20 0.00068 28.5 12.2 79 371-453 37-120 (134)
249 2uwj_G Type III export protein 80.0 11 0.00037 28.0 7.7 87 106-201 20-106 (115)
250 1v54_E Cytochrome C oxidase po 78.7 18 0.00063 27.0 9.2 49 285-333 26-74 (109)
251 3lvg_A Clathrin heavy chain 1; 78.3 4.5E-05 1.6E-09 74.5 -27.3 230 128-396 55-284 (624)
252 2uwj_G Type III export protein 77.8 19 0.00065 26.8 9.1 80 38-122 19-98 (115)
253 4fhn_B Nucleoporin NUP120; pro 77.5 49 0.0017 37.6 16.5 86 271-358 901-990 (1139)
254 2p58_C Putative type III secre 77.2 20 0.00069 26.7 9.1 80 38-122 20-99 (116)
255 3o48_A Mitochondria fission 1 75.3 23 0.00078 28.1 9.1 71 336-408 37-110 (134)
256 2wpv_A GET4, UPF0363 protein Y 73.6 59 0.002 30.3 19.1 135 25-186 13-158 (312)
257 2y69_E Cytochrome C oxidase su 70.5 38 0.0013 26.9 9.4 61 285-346 69-129 (152)
258 1y8m_A FIS1; mitochondria, unk 66.6 49 0.0017 26.6 11.7 76 371-450 36-116 (144)
259 3esl_A Checkpoint serine/threo 65.4 15 0.0005 31.7 6.5 64 25-88 76-142 (202)
260 3esl_A Checkpoint serine/threo 64.3 69 0.0024 27.5 11.4 55 106-160 93-148 (202)
261 1qsa_A Protein (soluble lytic 63.1 1.5E+02 0.005 30.8 36.4 255 63-332 74-347 (618)
262 4b4t_R RPN7, 26S proteasome re 61.7 1E+02 0.0035 30.2 13.1 61 236-296 133-195 (429)
263 4b4t_R RPN7, 26S proteasome re 61.3 44 0.0015 33.0 10.3 60 201-260 135-194 (429)
264 3ffl_A Anaphase-promoting comp 60.3 69 0.0024 26.5 9.4 56 99-154 27-90 (167)
265 1zbp_A Hypothetical protein VP 60.0 45 0.0016 30.2 9.0 55 101-156 6-60 (273)
266 1y8m_A FIS1; mitochondria, unk 60.0 66 0.0023 25.9 13.2 72 336-409 36-110 (144)
267 3ffl_A Anaphase-promoting comp 58.8 63 0.0021 26.8 8.9 57 240-296 26-90 (167)
268 3lvg_A Clathrin heavy chain 1; 57.0 0.00034 1.1E-08 68.6 -26.3 257 161-456 53-316 (624)
269 3ltm_A Alpha-REP4; protein eng 55.4 97 0.0033 26.4 19.5 49 125-177 62-110 (211)
270 1k1a_A B-cell lymphoma 3-encod 55.4 25 0.00086 30.9 6.9 22 136-157 15-36 (241)
271 4a1g_A Mitotic checkpoint seri 53.4 17 0.00056 29.8 4.6 39 89-127 98-136 (152)
272 2wvi_A Mitotic checkpoint seri 48.0 29 0.001 28.7 5.3 39 90-128 94-132 (164)
273 3eiq_C Programmed cell death p 45.9 1.8E+02 0.0062 27.6 11.2 65 272-337 220-286 (358)
274 3ltm_A Alpha-REP4; protein eng 45.9 1.4E+02 0.0047 25.4 17.1 128 85-225 57-184 (211)
275 3ltj_A Alpharep-4; protein eng 45.4 1.4E+02 0.0047 25.1 20.4 82 89-178 25-106 (201)
276 2r9g_A AAA ATPase, central reg 45.2 1.4E+02 0.0048 25.5 9.1 34 283-317 28-61 (204)
277 4aez_C MAD3, mitotic spindle c 44.9 23 0.00078 31.0 4.4 60 26-87 117-176 (223)
278 4a1g_A Mitotic checkpoint seri 44.4 1.3E+02 0.0044 24.5 10.4 50 111-160 84-134 (152)
279 1zbp_A Hypothetical protein VP 43.0 1.9E+02 0.0065 26.1 12.9 115 136-263 6-129 (273)
280 3bge_A Predicted ATPase; struc 39.9 1.4E+02 0.0049 25.4 8.3 45 274-318 9-56 (201)
281 2d2s_A Exocyst complex compone 37.9 2.1E+02 0.0073 25.2 10.1 26 269-294 91-116 (235)
282 1k1a_A B-cell lymphoma 3-encod 37.5 59 0.002 28.4 6.4 86 99-188 13-102 (241)
283 2nsz_A Programmed cell death p 36.8 96 0.0033 24.4 6.6 62 272-334 10-73 (129)
284 3ygs_P Procaspase 9; apoptosis 36.2 1E+02 0.0035 22.7 6.3 63 46-113 25-89 (97)
285 2wvi_A Mitotic checkpoint seri 35.7 1.9E+02 0.0064 23.9 10.9 51 111-161 79-130 (164)
286 3ctd_A Putative ATPase, AAA fa 35.7 1.9E+02 0.0065 24.9 8.5 46 273-318 36-84 (213)
287 3lpz_A GET4 (YOR164C homolog); 35.3 2.9E+02 0.0098 26.0 21.2 66 129-209 37-106 (336)
288 2d2s_A Exocyst complex compone 35.3 2.2E+02 0.0075 25.1 9.4 88 99-189 25-118 (235)
289 2p1h_A APAF-1, apoptotic prote 35.1 1.3E+02 0.0044 21.9 7.1 63 44-111 24-86 (94)
290 4aez_C MAD3, mitotic spindle c 32.6 2.3E+02 0.008 24.7 8.8 51 145-195 132-183 (223)
291 1wdy_A 2-5A-dependent ribonucl 31.3 38 0.0013 30.5 4.1 15 133-147 8-22 (285)
292 4gq2_M Nucleoporin NUP120; bet 29.6 3.5E+02 0.012 29.8 12.0 49 128-176 898-950 (950)
293 2ion_A PDCD4, programmed cell 29.1 86 0.003 25.5 5.3 62 272-334 12-75 (152)
294 2zu6_B Programmed cell death p 28.8 3.5E+02 0.012 25.0 10.5 25 130-154 6-30 (307)
295 1wdy_A 2-5A-dependent ribonucl 28.0 1E+02 0.0036 27.4 6.5 23 386-408 191-213 (285)
296 4g8k_A 2-5A-dependent ribonucl 26.9 2.2E+02 0.0077 26.2 8.8 105 325-444 220-329 (337)
297 1n11_A Ankyrin; clathrin, BAND 26.5 80 0.0027 30.8 5.7 17 170-186 118-134 (437)
298 2wpv_A GET4, UPF0363 protein Y 26.3 3.9E+02 0.013 24.7 21.5 114 129-257 35-157 (312)
299 2rg8_A Programmed cell death p 26.2 2.7E+02 0.0093 22.9 8.2 24 378-401 14-37 (165)
300 3txn_A 26S proteasome regulato 25.5 4.6E+02 0.016 25.2 21.8 27 198-224 20-46 (394)
301 2fe3_A Peroxide operon regulat 23.1 2.5E+02 0.0084 22.4 7.0 67 251-318 4-70 (145)
302 1mzb_A Ferric uptake regulatio 22.4 2.4E+02 0.0081 22.1 6.8 57 261-318 10-67 (136)
303 3t8k_A Uncharacterized protein 21.9 2.7E+02 0.0092 23.1 7.5 27 135-161 43-69 (186)
304 2xig_A Ferric uptake regulatio 21.7 3.1E+02 0.011 22.0 7.4 67 286-353 9-75 (150)
305 3eu9_A Huntingtin-interacting 21.5 63 0.0021 28.0 3.5 7 173-179 117-123 (240)
306 2yru_A Steroid receptor RNA ac 20.9 1.5E+02 0.005 22.9 4.8 42 396-437 48-89 (118)
307 1oai_A Nuclear RNA export fact 20.7 90 0.0031 20.6 3.1 24 38-61 33-56 (59)
308 3eyy_A Putative iron uptake re 20.7 2.2E+02 0.0074 22.8 6.2 57 260-318 10-66 (145)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-35 Score=319.63 Aligned_cols=416 Identities=8% Similarity=-0.045 Sum_probs=358.1
Q ss_pred hhHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhC--CCCCHHHHHHHHH
Q 007193 27 EQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV--PNPTLSTFNMLMS 100 (613)
Q Consensus 27 ~~~~~~~~l~----~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~li~ 100 (613)
++...|+.++ +.|++++|+.+|++|.... |.. .....++..+...|++++|..+|+++ .++++.+++.++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 158 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--GNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAF 158 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC--CCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHH
Confidence 4556666555 7899999999999999765 444 44556888899999999999999998 4789999999999
Q ss_pred HHHcCCChHHHHHHHHHHH-Hc--------------CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 007193 101 VCASSKDSEGAFQVLRLVQ-EA--------------GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTY 165 (613)
Q Consensus 101 ~~~~~~~~~~A~~~~~~m~-~~--------------g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 165 (613)
.|.+.|++++|..+|+++. .. +.+++..+|+.++.+|.+.|++++|.++|++|.+.+ +.+...+
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~ 237 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAF 237 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHH
Confidence 9999999999999998532 11 223458899999999999999999999999998764 2233333
Q ss_pred HH--------------------------------------HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007193 166 GA--------------------------------------LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207 (613)
Q Consensus 166 ~~--------------------------------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 207 (613)
.. ++..|.+.|++++|.++|+++.+. +++..+|+.++.+|
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHH
Confidence 33 355667889999999999999875 68999999999999
Q ss_pred HccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 007193 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287 (613)
Q Consensus 208 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 287 (613)
.+.|++++|.++|+++.... +.+..++..++.+|.+.|++++|..+|+++.+.. +.+..+|+.++..|.+.|++++
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEID---PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC---TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHhcCHHHHHHHHHHHHHcC---cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHH
Confidence 99999999999999998642 3467789999999999999999999999998765 6678999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007193 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (613)
Q Consensus 288 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (613)
|.++|+++.+.... +..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+++.++.+|.+.|++++|.++|+++.+
T Consensus 392 A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 392 ARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999886433 68899999999999999999999999999875 56889999999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCC
Q 007193 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL----GLCPN--TITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441 (613)
Q Consensus 368 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~ 441 (613)
.. +.+..+|+.++..|.+.|++++|+++|+++.+. +..|+ ..+|..+..+|.+.|++++|.++++++.+.+ .
T Consensus 470 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p 547 (597)
T 2xpi_A 470 LF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-T 547 (597)
T ss_dssp HC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-S
T ss_pred hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-C
Confidence 64 457899999999999999999999999999875 66887 7899999999999999999999999999754 3
Q ss_pred CCHHHHHHHHHHHHh
Q 007193 442 PNLVMFKCIIGMCSR 456 (613)
Q Consensus 442 p~~~~~~~li~~~~~ 456 (613)
.+..+|..+..+|.+
T Consensus 548 ~~~~~~~~l~~~~~~ 562 (597)
T 2xpi_A 548 NDANVHTAIALVYLH 562 (597)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHH
Confidence 477888888887654
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-33 Score=303.00 Aligned_cols=402 Identities=10% Similarity=0.021 Sum_probs=349.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCC-------------------CHH
Q 007193 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP-------------------TLS 93 (613)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------------------~~~ 93 (613)
..+.+.|++++|+.+|+++... +.+......++..+.+.|++++|+++|+++.+. +..
T Consensus 125 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (597)
T 2xpi_A 125 QVYCCTGDYARAKCLLTKEDLY---NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEAS 201 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHH
Confidence 4455899999999999998653 445667778888999999999999999965433 488
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHH--------------------------------------HH
Q 007193 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL--------------------------------------IT 135 (613)
Q Consensus 94 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l--------------------------------------i~ 135 (613)
+|+.++.+|.+.|++++|.++|+.|.+.+ +.+...+..+ +.
T Consensus 202 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 280 (597)
T 2xpi_A 202 MCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLN 280 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHH
Confidence 99999999999999999999999999875 3334443333 55
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH
Q 007193 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215 (613)
Q Consensus 136 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 215 (613)
.|.+.|++++|.++|+++.+. +++..+|+.++.+|.+.|++++|..+|+++.+.+ +.+..+++.++.++.+.|+.++
T Consensus 281 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 357 (597)
T 2xpi_A 281 KTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNK 357 (597)
T ss_dssp TTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHH
T ss_pred HHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHH
Confidence 666889999999999998865 5899999999999999999999999999998765 4477889999999999999999
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295 (613)
Q Consensus 216 a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 295 (613)
|.++++++... .+.+..+++.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|+++|+++
T Consensus 358 A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 433 (597)
T 2xpi_A 358 LYLISNDLVDR---HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTA 433 (597)
T ss_dssp HHHHHHHHHHH---CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhh---CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999863 25678899999999999999999999999998865 567889999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC
Q 007193 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI----KLK 371 (613)
Q Consensus 296 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~ 371 (613)
.+.+. .+..+|..++.+|.+.|++++|.++|+.+.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..
T Consensus 434 ~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 511 (597)
T 2xpi_A 434 ARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN 511 (597)
T ss_dssp HHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccc
Confidence 98764 378899999999999999999999999998875 557899999999999999999999999999775 567
Q ss_pred CC--HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC-HHHHH
Q 007193 372 PT--VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN-LVMFK 448 (613)
Q Consensus 372 ~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~ 448 (613)
|+ ..+|..++.+|.+.|++++|.+.|+++.+.+ +.+..+|..+..+|.+.|++++|.+.++++.+. .|+ ...+.
T Consensus 512 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~ 588 (597)
T 2xpi_A 512 EKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNEIMASD 588 (597)
T ss_dssp SGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCChHHHH
Confidence 77 7899999999999999999999999998864 448899999999999999999999999999984 454 33444
Q ss_pred HH
Q 007193 449 CI 450 (613)
Q Consensus 449 ~l 450 (613)
.+
T Consensus 589 ~l 590 (597)
T 2xpi_A 589 LL 590 (597)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.3e-30 Score=269.30 Aligned_cols=203 Identities=16% Similarity=0.247 Sum_probs=135.1
Q ss_pred HHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------HHH
Q 007193 253 AREVYKMIHKYNIKGTPE-VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK---------VEA 322 (613)
Q Consensus 253 A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---------~~~ 322 (613)
+..+.+.+.+.+....+. .++.+|++|++.|++++|+++|++|.+.|+.||..||++||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 344445555555444433 4666667777777777777777777776777777777777776665443 566
Q ss_pred HHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007193 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (613)
Q Consensus 323 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (613)
|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|+.++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007193 403 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (613)
Q Consensus 403 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 455 (613)
.|+.||..||+++|.+|++.|++++|.+++++|.+.|..|+..||+.+++.|.
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 77777777777777777777777777777777777777777777777777654
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=5.7e-30 Score=264.56 Aligned_cols=188 Identities=18% Similarity=0.279 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHCCCCCCHH
Q 007193 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD---------WEFACSVYDDMTKKGVIPDEV 305 (613)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~~~a~~~~~~m~~~g~~p~~~ 305 (613)
..++.+|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. .++|.++|++|...|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 34666677777777777777777777777777777777777777766543 678889999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007193 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (613)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (613)
||+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 007193 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422 (613)
Q Consensus 386 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 422 (613)
+.|+.++|.++|++|.+.|..|+..||+.++..|+..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999888887764
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.6e-26 Score=234.46 Aligned_cols=377 Identities=12% Similarity=0.045 Sum_probs=283.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChH
Q 007193 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSE 109 (613)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~ 109 (613)
..+.+.|++++|.+.+.++.+.. |.+......+...+...|++++|..+++... +.+..+|..+...+.+.|+++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 45668899999999999888876 6666677777777777888888888877543 556778888888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (613)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (613)
+|...|+.+.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|...|+++.
T Consensus 85 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 8888888887764 4456678888888888888888888888887763 3345567777777888888888888888887
Q ss_pred hCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCH
Q 007193 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269 (613)
Q Consensus 190 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 269 (613)
+.. +.+..+|..+...+...|++++|...|+++.... +.+...+..+...+...|++++|...|++..... +.+.
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 237 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD---PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCH
Confidence 652 3346778888888888888888888888877632 3346677777788888888888888888777764 4557
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHH
Q 007193 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (613)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (613)
.++..+...|.+.|++++|.+.|+++.+.++. +..++..+...+.+.|++++|...++.+.+.. +.+..+++.+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 77888888888888888888888888776543 56677778888888888888888888877764 56677788888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcC
Q 007193 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKD 423 (613)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g 423 (613)
.+.|++++|...|+++.+.. +.+..+|..+...|.+.|++++|++.|+++.+. .| +...|..+...+...|
T Consensus 316 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 88888888888888877643 345677788888888888888888888887763 45 3445555555444433
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=2.7e-25 Score=225.44 Aligned_cols=362 Identities=13% Similarity=0.077 Sum_probs=316.7
Q ss_pred HHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH
Q 007193 69 NVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145 (613)
Q Consensus 69 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 145 (613)
..+.+.|++++|.+.|.++. +.+...+..+...+...|++++|...++...+.. +.+..+|..+...|.+.|++++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 34566789999999998753 4566777888888999999999999999988865 6788999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 007193 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (613)
Q Consensus 146 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 225 (613)
|.+.|+++.+.. +.+..+|..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|.+.|.++..
T Consensus 86 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999998764 4456789999999999999999999999998763 23455677788899999999999999999986
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 007193 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305 (613)
Q Consensus 226 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 305 (613)
. .+.+..++..+...+.+.|++++|...|+++.+.+ +.+...|..+...+...|++++|...|++.....+. +..
T Consensus 164 ~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~ 238 (388)
T 1w3b_A 164 T---QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAV 238 (388)
T ss_dssp H---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHH
T ss_pred h---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHH
Confidence 4 24457889999999999999999999999999876 567889999999999999999999999999886543 678
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007193 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (613)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (613)
++..+...+...|++++|...++.+.+.. +.+..++..+...+.+.|++++|...|+++.+.. +.+..+|+.+...+.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHH
Confidence 89999999999999999999999999875 5567889999999999999999999999998764 567899999999999
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC
Q 007193 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443 (613)
Q Consensus 386 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~ 443 (613)
+.|++++|.+.++++.+. .+.+..++..+..++.+.|++++|...++++.+ ..|+
T Consensus 317 ~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~ 371 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPT 371 (388)
T ss_dssp TTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTT
T ss_pred HcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCC
Confidence 999999999999999875 244678899999999999999999999999987 4554
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=1.5e-21 Score=201.82 Aligned_cols=332 Identities=11% Similarity=0.020 Sum_probs=232.3
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007193 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (613)
Q Consensus 90 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 169 (613)
.++..|..+...+.+.|++++|..+|+.+.+.. +.+..++..+..+|...|++++|.+.|+++.+.+ +.+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 355667777777777777777877777777653 4567777777777777788888887777777654 34566777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHH------------HHHHHccCCHHHHHHHHHHHhhCCCCCCCC
Q 007193 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDR----VVFNAL------------ITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233 (613)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 233 (613)
..|.+.|++++|...|+++.+. .|+. ..+..+ ...+...|++++|...|+++... .+.+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~ 176 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV---CVWD 176 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC
Confidence 7777778888888887777765 3332 444444 33377778888888888877653 2345
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH---
Q 007193 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL--- 310 (613)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l--- 310 (613)
..++..+..+|.+.|++++|...|+++.+.+ +.+..+|..+...|...|++++|+..|+++...... +...+..+
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~ 254 (450)
T 2y4t_A 177 AELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQV 254 (450)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHH
Confidence 6777777888888888888888888777654 556777888888888888888888888887765332 33444333
Q ss_pred ---------HHHHHhcCCHHHHHHHHHHHHHCCCCcC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007193 311 ---------IDFAGHAGKVEAAFEILQEAKNQGISVG----IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377 (613)
Q Consensus 311 ---------i~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 377 (613)
...|.+.|++++|...|..+.+.. +.+ ..++..+...+.+.|++++|...++++.+.. +.+...|
T Consensus 255 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~ 332 (450)
T 2y4t_A 255 KKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNAL 332 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHH
Confidence 677778888888888888877653 112 3467777788888888888888888876543 3457778
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHH------------HHHhhcC-----CHHHHHHHHHH
Q 007193 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILL------------VACERKD-----DVEVGLMLLSQ 434 (613)
Q Consensus 378 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll------------~a~~~~g-----~~~~a~~~~~~ 434 (613)
..+..+|...|++++|.+.|+++.+ +.|+ ...+..+. ..|...| +.+++++.+++
T Consensus 333 ~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 333 KDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 8888888888888888888888776 3454 34444444 2233444 55677777775
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=5.8e-21 Score=197.44 Aligned_cols=306 Identities=13% Similarity=0.083 Sum_probs=234.5
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007193 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203 (613)
Q Consensus 124 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 203 (613)
+.+...+..+...+.+.|++++|.++|+++.+.. +.+..+|..+...|.+.|++++|...|+++.+.+ +.+..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 4567778888888888888888888888887653 4567788888888888888888888888887764 4457778888
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCCCC-H---HHHHHH------------HHHHHhcCChHHHHHHHHHHHhcCCCC
Q 007193 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPD-H---ITIGAL------------MKACANAGQVDRAREVYKMIHKYNIKG 267 (613)
Q Consensus 204 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~---~~~~~l------------l~~~~~~g~~~~A~~~~~~~~~~~~~~ 267 (613)
...|.+.|++++|.+.|+++... .|+ . ..+..+ ...+.+.|++++|...|+++.+.. +.
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~ 175 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKS----NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VW 175 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTS----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 88888888888888888888753 344 3 444444 344788888888888888887765 55
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHH--
Q 007193 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL-- 345 (613)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-- 345 (613)
+..++..+...|.+.|++++|.+.|+++.+... .+..++..+...|...|++++|...|+.+.+.. +.+...+..+
T Consensus 176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~ 253 (450)
T 2y4t_A 176 DAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQ 253 (450)
T ss_dssp CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHH
Confidence 677888888888888888888888888876543 267788888888888888888888888887654 3344444444
Q ss_pred ----------HHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHH
Q 007193 346 ----------MGACSNAKNWQKALELYEHMKSIKLKPT-----VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410 (613)
Q Consensus 346 ----------i~~~~~~g~~~~A~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 410 (613)
...|.+.|++++|...|+++.+. .|+ ...|..+...+.+.|++++|++.++++.+.. +.+..
T Consensus 254 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~ 330 (450)
T 2y4t_A 254 VKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVN 330 (450)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHH
Confidence 77888888888888888888764 344 3467778888888888888888888877642 33677
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC
Q 007193 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443 (613)
Q Consensus 411 t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~ 443 (613)
+|..+..+|...|++++|...++++.+ +.|+
T Consensus 331 ~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~ 361 (450)
T 2y4t_A 331 ALKDRAEAYLIEEMYDEAIQDYETAQE--HNEN 361 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcc
Confidence 888888888888888888888888876 3454
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=4e-21 Score=202.21 Aligned_cols=402 Identities=10% Similarity=0.014 Sum_probs=312.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCC
Q 007193 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSK 106 (613)
Q Consensus 30 ~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~ 106 (613)
..-+.+.+.|++++|+..|+++.+.+ | +...+..++..+...|++++|+..|+++. +.+...|..+..++...|
T Consensus 11 ~~g~~~~~~g~~~~A~~~~~~al~~~--p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 87 (514)
T 2gw1_A 11 DKGNQFFRNKKYDDAIKYYNWALELK--E-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLG 87 (514)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHC--C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC--c-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHh
Confidence 34456679999999999999999987 5 46667778888899999999999998754 557789999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC------------------------------
Q 007193 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA------------------------------ 156 (613)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------------------------------ 156 (613)
++++|...|+.+.+.+ +++......++..+........+.+.+..+...
T Consensus 88 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
T 2gw1_A 88 KFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166 (514)
T ss_dssp CHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHH
T ss_pred hHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHH
Confidence 9999999999999876 445555555555444433333332222111100
Q ss_pred -----CC---------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----CCC--------CCCHHHHHHHHHH
Q 007193 157 -----GI---------EPNVHTYGALIDGCAK---AGQVAKAFGAYGIMRS-----KNV--------KPDRVVFNALITA 206 (613)
Q Consensus 157 -----g~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~--------~p~~~~~~~li~~ 206 (613)
.. +.+...+..+...+.. .|++++|...|+++.. ..- +.+..++..+...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (514)
T 2gw1_A 167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIF 246 (514)
T ss_dssp HHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHH
Confidence 00 1113344444444444 8999999999999987 311 1234577788889
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 007193 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286 (613)
Q Consensus 207 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 286 (613)
+...|++++|...|+++... .|+..++..+...+...|++++|...++++.+.. +.+..++..+...+...|+++
T Consensus 247 ~~~~~~~~~A~~~~~~~l~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 247 KFLKNDPLGAHEDIKKAIEL----FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHSSCHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHCCCHHHHHHHHHHHHhh----CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHH
Confidence 99999999999999998864 3447788888999999999999999999998875 556788999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (613)
Q Consensus 287 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (613)
+|...|+++.+.... +...+..+...+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.
T Consensus 322 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 322 QAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999887654 56788888999999999999999999998764 4567888999999999999999999999887
Q ss_pred hCCC-CCC----HHHHHHHHHHHHc---CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 007193 367 SIKL-KPT----VSTMNALITALCD---GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (613)
Q Consensus 367 ~~~~-~~~----~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (613)
+... .++ ...|..+...+.. .|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+.
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 5321 111 3488899999999 999999999999988753 346778888999999999999999999999884
Q ss_pred CCCCCHH
Q 007193 439 GVIPNLV 445 (613)
Q Consensus 439 g~~p~~~ 445 (613)
.|+..
T Consensus 479 --~~~~~ 483 (514)
T 2gw1_A 479 --ARTME 483 (514)
T ss_dssp --CSSHH
T ss_pred --ccccH
Confidence 45543
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.1e-20 Score=198.95 Aligned_cols=370 Identities=6% Similarity=-0.034 Sum_probs=287.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCC
Q 007193 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKD 107 (613)
Q Consensus 31 ~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~ 107 (613)
....+.+.|++++|+..|+++.+.+ |.+...+..++.++...|++++|...|+++. +++......++..+.....
T Consensus 45 la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (514)
T 2gw1_A 45 LSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQA 122 (514)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHH
Confidence 3345568999999999999999987 7777788888999999999999999998753 3344444444444333222
Q ss_pred hHHHHHHHHHHHHc-----------------------------------CC---------CCCHHHHHHHHHHHHH---c
Q 007193 108 SEGAFQVLRLVQEA-----------------------------------GL---------KADCKLYTTLITTCAK---S 140 (613)
Q Consensus 108 ~~~A~~~~~~m~~~-----------------------------------g~---------~~~~~~~~~li~~~~~---~ 140 (613)
...+.+.+..+... .. +.+...+......+.. .
T Consensus 123 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (514)
T 2gw1_A 123 MSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSP 202 (514)
T ss_dssp HHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCT
T ss_pred HHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhh
Confidence 22222222111100 00 1113344444444444 8
Q ss_pred CChhHHHHHHHHHHH-----CCC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007193 141 GKVDAMFEVFHEMVN-----AGI--------EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207 (613)
Q Consensus 141 g~~~~a~~~~~~m~~-----~g~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 207 (613)
|++++|...|+++.+ ..- +.+..++..+...+...|++++|...|+++.... |+...+..+...+
T Consensus 203 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~ 280 (514)
T 2gw1_A 203 ESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIM 280 (514)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHH
Confidence 999999999999987 311 2245678889999999999999999999998874 4478888999999
Q ss_pred HccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 007193 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287 (613)
Q Consensus 208 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 287 (613)
...|++++|...++++... .+.+..++..+...|...|++++|...|+++.+.. +.+..++..+...+...|++++
T Consensus 281 ~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 356 (514)
T 2gw1_A 281 ADRNDSTEYYNYFDKALKL---DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDD 356 (514)
T ss_dssp HTSSCCTTGGGHHHHHHTT---CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHH
T ss_pred HHCCCHHHHHHHHHHHhhc---CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999864 24467788899999999999999999999998876 5567899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cC----HHhHHHHHHHHHh---cCCHHHHH
Q 007193 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS-VG----IISYSSLMGACSN---AKNWQKAL 359 (613)
Q Consensus 288 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~---~g~~~~A~ 359 (613)
|...++++.+.... +..++..+...+...|++++|...+..+.+.... ++ ...+..+...|.. .|++++|.
T Consensus 357 A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~ 435 (514)
T 2gw1_A 357 CETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEAT 435 (514)
T ss_dssp HHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHH
T ss_pred HHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHH
Confidence 99999999876443 5678889999999999999999999998765311 11 3488999999999 99999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHH
Q 007193 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412 (613)
Q Consensus 360 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 412 (613)
..|+++.+.. +.+..+|..+...|.+.|++++|.+.|++..+. .|+....
T Consensus 436 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~ 485 (514)
T 2gw1_A 436 NLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTMEEK 485 (514)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--ccccHHH
Confidence 9999988754 346788999999999999999999999999884 5765443
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=5.1e-20 Score=194.98 Aligned_cols=390 Identities=12% Similarity=0.043 Sum_probs=293.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCCh
Q 007193 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDS 108 (613)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~ 108 (613)
-+.+.+.|++++|+..|+++.+.+ |.+...+..++..+...|++++|++.|+++. +.+...|..+...+...|++
T Consensus 32 g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 109 (537)
T 3fp2_A 32 GNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNF 109 (537)
T ss_dssp HHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCH
Confidence 345568999999999999999987 7788888888999999999999999998754 56788999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC------CCCCCHHH------------------
Q 007193 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA------GIEPNVHT------------------ 164 (613)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~~~~~~------------------ 164 (613)
++|...|+.+ .. .|+. ....+..+...+...+|...++.+... ...|+...
T Consensus 110 ~~A~~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (537)
T 3fp2_A 110 TDAMFDLSVL-SL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN 184 (537)
T ss_dssp HHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSC
T ss_pred HHHHHHHHHH-hc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHh
Confidence 9999999633 22 2322 222344555566667788888877432 11122221
Q ss_pred ------------HHHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCC--------HHHHHHHHHHHHccCCHHHH
Q 007193 165 ------------YGALIDGCAK--------AGQVAKAFGAYGIMRSKNVKPD--------RVVFNALITACGQSGAVDRA 216 (613)
Q Consensus 165 ------------~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~--------~~~~~~li~~~~~~g~~~~a 216 (613)
...+...+.. .|++++|..+|+++.+. .|+ ..++..+...+...|++++|
T Consensus 185 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 185 TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp CCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 2222222211 24788999999998876 333 23466666778888999999
Q ss_pred HHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (613)
Q Consensus 217 ~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 296 (613)
...+.+.... .|+..++..+...+...|++++|...|+++.+.. +.+..+|..+...+...|++++|...|+++.
T Consensus 263 ~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 263 QVLLQESINL----HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHH----CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhc----CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999998864 4567788888888999999999999999988876 5677889999999999999999999999988
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CC
Q 007193 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK-----LK 371 (613)
Q Consensus 297 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~ 371 (613)
+.... +...+..+...+...|++++|...+..+.+.. +.+...+..+...|...|++++|...|+++.+.. ..
T Consensus 338 ~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 415 (537)
T 3fp2_A 338 SLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIH 415 (537)
T ss_dssp HHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCS
T ss_pred HhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhH
Confidence 76543 55778888899999999999999999988875 5567788889999999999999999999876532 11
Q ss_pred CCHHHHHHHHHHHHcC----------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 007193 372 PTVSTMNALITALCDG----------DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (613)
Q Consensus 372 ~~~~~~~~li~~~~~~----------g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (613)
.....+..+...+.+. |++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 416 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 416 VGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp STTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 1223344555667777 99999999999988752 346778888889999999999999999998874
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=1.1e-17 Score=166.76 Aligned_cols=313 Identities=11% Similarity=0.043 Sum_probs=184.9
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007193 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (613)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 170 (613)
|+..+..+...+...|++++|...|+.+.+.. +.+..++..+...+...|++++|.+.|+++.+.. +.+...|..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34566777778888888888888888887764 5567788888888888888888888888877653 346677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC----CHHHHHHH------------HHHHHccCCHHHHHHHHHHHhhCCCCCCCCH
Q 007193 171 GCAKAGQVAKAFGAYGIMRSKNVKP----DRVVFNAL------------ITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234 (613)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 234 (613)
.+...|++++|...|++..+. .| +...+..+ ...+...|++++|.+.++++... .+.+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~ 154 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV---CVWDA 154 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCch
Confidence 888888888888888888765 34 23333333 24445555555555555555432 12334
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007193 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (613)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 314 (613)
..+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...|++..+.... +...+..+...
T Consensus 155 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~- 231 (359)
T 3ieg_A 155 ELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQV- 231 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHH-
Confidence 445555555555555555555555555443 334455555555555555555555555555443221 11111111000
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHcCCCh
Q 007193 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV----STMNALITALCDGDQL 390 (613)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~ 390 (613)
. .......+...+.+.|++++|...++++.+... .+. ..+..+...+.+.|++
T Consensus 232 ----------------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~ 288 (359)
T 3ieg_A 232 ----------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTEP-SVAEYTVRSKERICHCFSKDEKP 288 (359)
T ss_dssp ----------------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHHHHHTTCH
T ss_pred ----------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHccCH
Confidence 0 000111224456666666666666666655321 122 2233455666667777
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 391 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
++|++.+++..+.. +.+..++..+...+...|++++|...++++.+
T Consensus 289 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 289 VEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77777777666531 22556666666677777777777777776665
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.85 E-value=1.1e-17 Score=176.93 Aligned_cols=379 Identities=11% Similarity=0.031 Sum_probs=279.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007193 62 VYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138 (613)
Q Consensus 62 ~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 138 (613)
..+...+..+...|++++|+..|+++. +.++..|..+...+.+.|++++|.+.++.+.+.+ +.+..++..+..++.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH
Confidence 344556677778888999999998754 5678889999999999999999999999998875 567888899999999
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCCHHHH------------
Q 007193 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK------NVKPDRVVF------------ 200 (613)
Q Consensus 139 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~------------ 200 (613)
..|++++|.+.|+.+ .. .|+ ..+..+..+...+....|...++++... ...|+....
T Consensus 105 ~~g~~~~A~~~~~~~-~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVL-SL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HcCCHHHHHHHHHHH-hc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 999999999999633 22 222 2233345566666677888888887543 112222221
Q ss_pred ------------------HHHHHHHHc--------cCCHHHHHHHHHHHhhCCCCCCCC--------HHHHHHHHHHHHh
Q 007193 201 ------------------NALITACGQ--------SGAVDRAFDVLAEMNAEVHPVDPD--------HITIGALMKACAN 246 (613)
Q Consensus 201 ------------------~~li~~~~~--------~g~~~~a~~~~~~m~~~~~~~~~~--------~~~~~~ll~~~~~ 246 (613)
..+...+.. .|++++|..+++++... .|+ ..++..+...+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~----~p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA----NTVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH----CCCcchhhHHHHHHHHHHHHHHHh
Confidence 222222222 14788999999998864 333 2346666778888
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007193 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326 (613)
Q Consensus 247 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 326 (613)
.|++++|...|+.+.+.. |+..++..+...+...|++++|.+.|+++.+.... +..++..+...+...|++++|...
T Consensus 256 ~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Confidence 999999999999998864 44788999999999999999999999999887543 678899999999999999999999
Q ss_pred HHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC--
Q 007193 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-- 404 (613)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-- 404 (613)
+..+.+.. +.+...+..+...|...|++++|...|+++.+.. +.+...|..+...+...|++++|.+.|+++.+..
T Consensus 333 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 333 FQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 99998875 4467788999999999999999999999988764 3457788999999999999999999999987632
Q ss_pred ---CCCCHHHHHHHHHHHhhc----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007193 405 ---LCPNTITYSILLVACERK----------DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456 (613)
Q Consensus 405 ---~~p~~~t~~~ll~a~~~~----------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 456 (613)
.......+......+... |++++|...++++.+.. +.+...+..+..++.+
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~ 474 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQ 474 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 111222344445667777 99999999999998742 2345556556555443
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=3.1e-17 Score=163.57 Aligned_cols=312 Identities=12% Similarity=0.041 Sum_probs=207.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007193 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206 (613)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 206 (613)
+..+..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|...|+++.+.. +.+...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 4566677777888888888888888877654 4457777788888888888888888888877652 3356677777788
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 007193 207 CGQSGAVDRAFDVLAEMNAEVHPVDP----DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (613)
Q Consensus 207 ~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 282 (613)
+...|++++|...|++.... .| +...+..+...+. ...+..+...+...
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~ 133 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKS----NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDG 133 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTS----CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHT
T ss_pred HHHcCChHHHHHHHHHHHhc----CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHc
Confidence 88888888888888877653 34 2222222211000 01122334556666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHH
Q 007193 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362 (613)
Q Consensus 283 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 362 (613)
|++++|.+.++++.+.... +...+..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++|...|
T Consensus 134 ~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 211 (359)
T 3ieg_A 134 ADYTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEV 211 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666666666655332 45566666666666677777777666666553 445666666777777777777777777
Q ss_pred HHHHhCCCCCCHHHHH------------HHHHHHHcCCChhHHHHHHHHHHhCCCCCC-H----HHHHHHHHHHhhcCCH
Q 007193 363 EHMKSIKLKPTVSTMN------------ALITALCDGDQLPKTMEVLSDMKSLGLCPN-T----ITYSILLVACERKDDV 425 (613)
Q Consensus 363 ~~m~~~~~~~~~~~~~------------~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~----~t~~~ll~a~~~~g~~ 425 (613)
++..+.. +.+...+. .+...+.+.|++++|++.++++.+. .|+ . ..+..+...+...|++
T Consensus 212 ~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~ 288 (359)
T 3ieg_A 212 RECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKP 288 (359)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCH
Confidence 7666542 22233332 3366789999999999999998875 344 3 2345577889999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--hHHHHHHhhhhhhcccC
Q 007193 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNS 473 (613)
Q Consensus 426 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~ 473 (613)
++|...++++.+.. +.+...+..+...+.+ ++++|....+.....++
T Consensus 289 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 289 VEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 99999999998752 2356667767666654 67777777665554443
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=3e-17 Score=161.66 Aligned_cols=266 Identities=11% Similarity=0.012 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007193 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (613)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 208 (613)
.+..+...+...|++++|.++|+++.+.. +.+..++..++..+...|++++|..+++++.+.. +.+...|..+...+.
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 101 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYL 101 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH
Confidence 33334444444444444444444444332 2223333334444444444444444444444331 122334444444444
Q ss_pred ccC-CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 007193 209 QSG-AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287 (613)
Q Consensus 209 ~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 287 (613)
..| ++++|.+.|++..... +.+...+..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++
T Consensus 102 ~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 102 MVGHKNEHARRYLSKATTLE---KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HSCSCHHHHHHHHHHHHTTC---TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HhhhhHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHH
Confidence 444 4444444444444321 1223344444444444444444444444444432 2223344444444444555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCcCHHhHHHHHHHHHhcCCHHHHH
Q 007193 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG--------ISVGIISYSSLMGACSNAKNWQKAL 359 (613)
Q Consensus 288 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~ 359 (613)
|.+.+++..+.... +...+..+...+...|++++|...++...+.. .+.+..++..+...|.+.|++++|.
T Consensus 178 A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 55555544443322 33444444444445555555555544443321 0222344555555555555555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007193 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (613)
Q Consensus 360 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (613)
..|++..+.. +.+...|..+...|.+.|++++|.+.|++..+
T Consensus 257 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 257 DYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 5555554432 22344555555555555555555555555444
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=5.6e-17 Score=159.72 Aligned_cols=292 Identities=14% Similarity=0.070 Sum_probs=242.1
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007193 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (613)
Q Consensus 90 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 169 (613)
.++..+..+...+...|++++|..+|+.+.+.. +.+...+..++..+...|++++|..+++++.+.. +.+..+|..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 456677778888888999999999999998775 5556677778888899999999999999988764 44678889999
Q ss_pred HHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcC
Q 007193 170 DGCAKAG-QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248 (613)
Q Consensus 170 ~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g 248 (613)
..+...| ++++|...|++..... +.+...|..+...+...|++++|.+.+++..... +.+...+..+...|...|
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM---KGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT---TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHh
Confidence 9999999 9999999999998764 3456788889999999999999999999987642 334567777889999999
Q ss_pred ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCH
Q 007193 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG--------VIPDEVFLSALIDFAGHAGKV 320 (613)
Q Consensus 249 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--------~~p~~~~~~~li~~~~~~g~~ 320 (613)
++++|...+++..+.. +.+..++..+...+...|++++|...+++..+.. ...+..++..+...+...|++
T Consensus 174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 9999999999998876 6678899999999999999999999999887632 123457888999999999999
Q ss_pred HHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HcCCCh
Q 007193 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL-CDGDQL 390 (613)
Q Consensus 321 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~-~~~g~~ 390 (613)
++|...++...+.. +.+...+..+...|.+.|++++|.+.|++..+.. +.+...+..+..++ ...|+.
T Consensus 253 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 253 AEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCch
Confidence 99999999998875 4577889999999999999999999999988754 34677888888777 455544
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=2.2e-15 Score=158.90 Aligned_cols=394 Identities=11% Similarity=0.080 Sum_probs=265.8
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC--CCCHHHHHHHHHH-HHcCCChHHHH
Q 007193 36 IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMSV-CASSKDSEGAF 112 (613)
Q Consensus 36 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~-~~~~~~~~~A~ 112 (613)
.+.|++++|+.+|+++.+.. |.+..++..++..+.+.|++++|..+|++.. .|++..|...+.. ....|+.+.|.
T Consensus 23 ~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~ 100 (530)
T 2ooe_A 23 AQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYK 100 (530)
T ss_dssp HHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHH
T ss_pred HHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHH
Confidence 46799999999999999876 7777777788888888899999999999865 4677788877753 34567777766
Q ss_pred H----HHHHHHHc-CCC-CCHHHHHHHHHHHHH---------cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----
Q 007193 113 Q----VLRLVQEA-GLK-ADCKLYTTLITTCAK---------SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC----- 172 (613)
Q Consensus 113 ~----~~~~m~~~-g~~-~~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~----- 172 (613)
+ +|+..... |.. ++...|...+....+ .|+++.|..+|++..+....+....|.......
T Consensus 101 ~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~ 180 (530)
T 2ooe_A 101 EKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI 180 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch
Confidence 5 66666543 443 356778887777655 688999999999988731111123444322211
Q ss_pred --------HhcCCHHHHHHHHHHH------HhCC---CCCC--------HHHHHHHHHHHHcc----CCH----HHHHHH
Q 007193 173 --------AKAGQVAKAFGAYGIM------RSKN---VKPD--------RVVFNALITACGQS----GAV----DRAFDV 219 (613)
Q Consensus 173 --------~~~g~~~~A~~~~~~m------~~~g---~~p~--------~~~~~~li~~~~~~----g~~----~~a~~~ 219 (613)
.+.+++..|..++.+. .+.. ++|+ ...|...+...... ++. ..+..+
T Consensus 181 ~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~ 260 (530)
T 2ooe_A 181 HLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFA 260 (530)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHH
Confidence 1234566677666652 2211 2443 23455444332221 222 366677
Q ss_pred HHHHhhCCCCCCCCHHHHHHHHHHHHh-------cCChH-------HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 007193 220 LAEMNAEVHPVDPDHITIGALMKACAN-------AGQVD-------RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285 (613)
Q Consensus 220 ~~~m~~~~~~~~~~~~~~~~ll~~~~~-------~g~~~-------~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 285 (613)
|++.... .+.+...|..+...+.+ .|+++ +|..+|++..+.-.+.+...|..++..+.+.|++
T Consensus 261 y~~al~~---~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~ 337 (530)
T 2ooe_A 261 YEQCLLV---LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKY 337 (530)
T ss_dssp HHHHHHH---HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHh---CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCH
Confidence 7777653 23456677777776665 68876 7888888877632355677888888888888888
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHH-HHhcCCHHHHHHHHH
Q 007193 286 EFACSVYDDMTKKGVIPD-EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA-CSNAKNWQKALELYE 363 (613)
Q Consensus 286 ~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~ 363 (613)
++|..+|+++.+.... + ...|...+..+.+.|++++|..+|+...+.. +.+...+...... +...|+.++|..+|+
T Consensus 338 ~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e 415 (530)
T 2ooe_A 338 EKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFE 415 (530)
T ss_dssp HHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHH
Confidence 8888888888875322 3 2467777777778888888888888887753 2233333322222 335788888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 364 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-LCPN--TITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 364 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
...+.. +.+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......|+.+.+..++.++.+
T Consensus 416 ~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 416 LGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 776643 3357788888888888888888888888887753 2332 44677777777778888888888887775
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.80 E-value=1.4e-14 Score=151.11 Aligned_cols=365 Identities=11% Similarity=0.006 Sum_probs=297.4
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhh----hHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHc----CCChHHHHHH
Q 007193 44 CIDLLEDMERKGLLDMDKVYHARFFNVCKS----QKAIKEAFRFFKLVP-NPTLSTFNMLMSVCAS----SKDSEGAFQV 114 (613)
Q Consensus 44 A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~~~~~~A~~~ 114 (613)
+...+.+..+.| +......+...+.. .+++++|+..|++.. ..++..+..+...|.. .+++++|...
T Consensus 26 ~~~~~~~~a~~g----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 26 NLEQLKQKAESG----EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp CHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 345555555554 23334445555555 678899999998754 4577788888888888 8999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 007193 115 LRLVQEAGLKADCKLYTTLITTCAK----SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK----AGQVAKAFGAYG 186 (613)
Q Consensus 115 ~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~ 186 (613)
|+...+.| +...+..|...|.. .+++++|.+.|++..+.| +...+..|...|.. .++.++|+..|+
T Consensus 102 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 175 (490)
T 2xm6_A 102 YKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYS 175 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99998865 66777888888888 789999999999998875 67778888888887 789999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHH
Q 007193 187 IMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN----AGQVDRAREVYK 258 (613)
Q Consensus 187 ~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~ 258 (613)
+..+.| +...+..+...|.. .++.++|.+.|.+.... .+...+..+...|.. .+++++|...|+
T Consensus 176 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 176 KAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS-----GDELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 998875 67788888888887 89999999999998763 356677788888876 789999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHH
Q 007193 259 MIHKYNIKGTPEVYTIAINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA-----GKVEAAFEILQE 329 (613)
Q Consensus 259 ~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~ 329 (613)
+..+.+ +...+..+...|.. .+++++|++.|++..+.| +...+..+...|... ++.++|...+..
T Consensus 248 ~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~ 321 (490)
T 2xm6_A 248 QSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTK 321 (490)
T ss_dssp HHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH
Confidence 988765 45677778888887 899999999999998775 456777777888877 899999999999
Q ss_pred HHHCCCCcCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHh
Q 007193 330 AKNQGISVGIISYSSLMGACSNAK---NWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKS 402 (613)
Q Consensus 330 ~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~ 402 (613)
..+.+ +...+..+...|...| +.++|.+.|++..+. .+...+..|...|.. .+++++|++.|++..+
T Consensus 322 a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 322 SAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 98876 4567778888888766 789999999999885 467888889999988 8999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHcCCC
Q 007193 403 LGLCPNTITYSILLVACER----KDDVEVGLMLLSQAKEDGVI 441 (613)
Q Consensus 403 ~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~g~~ 441 (613)
.| +...+..+...|.+ .++.++|...|++..+.|..
T Consensus 396 ~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 396 QG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 65 56777778888887 89999999999999986643
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.79 E-value=1.9e-14 Score=150.12 Aligned_cols=338 Identities=13% Similarity=0.039 Sum_probs=286.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhh----hHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHc----CCCh
Q 007193 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS----QKAIKEAFRFFKLVP-NPTLSTFNMLMSVCAS----SKDS 108 (613)
Q Consensus 38 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~~~~ 108 (613)
.+++++|+..|++..+.| +......+...+.. .++.++|++.|++.. ..++..+..+...|.. .+++
T Consensus 56 ~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~ 131 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDK 131 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCH
Confidence 789999999999999876 23344556667766 788999999998865 4577788888888888 8899
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHH
Q 007193 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAK----SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK----AGQVAK 180 (613)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~ 180 (613)
++|...|+...+.| +...+..|...|.. .++.++|.+.|++..+.| +...+..|...|.. .++.++
T Consensus 132 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 205 (490)
T 2xm6_A 132 AESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAI 205 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHH
Confidence 99999999998876 57778888888887 789999999999998865 77888999999988 899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHh----cCChHH
Q 007193 181 AFGAYGIMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN----AGQVDR 252 (613)
Q Consensus 181 A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~ 252 (613)
|...|++..+.| +...+..+...|.. .++.++|.++|++.... .+...+..+...|.. .++.++
T Consensus 206 A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~y~~g~~~~~d~~~ 277 (490)
T 2xm6_A 206 SAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-----GNSIAQFRLGYILEQGLAGAKEPLK 277 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-----TCHHHHHHHHHHHHHTTTSSCCHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHCCCCCCCCHHH
Confidence 999999998875 56777778888876 78999999999998763 355677778788887 899999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHH
Q 007193 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQT-----GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG---KVEAAF 324 (613)
Q Consensus 253 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~a~ 324 (613)
|...|++..+.+ ++..+..+...|... +++++|...|++..+.| +...+..+...|...| +.++|.
T Consensus 278 A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~ 351 (490)
T 2xm6_A 278 ALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAV 351 (490)
T ss_dssp HHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHH
Confidence 999999998765 457888888888887 89999999999999875 4567777777787766 789999
Q ss_pred HHHHHHHHCCCCcCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhHHHHH
Q 007193 325 EILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEV 396 (613)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l 396 (613)
..|+...+.+ ++..+..|...|.. .+++++|...|++..+.+ +...+..|...|.+ .++.++|...
T Consensus 352 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 425 (490)
T 2xm6_A 352 EWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAW 425 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999999875 67888899999988 899999999999998854 67788889999988 8999999999
Q ss_pred HHHHHhCCC
Q 007193 397 LSDMKSLGL 405 (613)
Q Consensus 397 ~~~m~~~g~ 405 (613)
|++..+.+.
T Consensus 426 ~~~A~~~~~ 434 (490)
T 2xm6_A 426 FDTASTNDM 434 (490)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHCCC
Confidence 999988753
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.78 E-value=4.2e-17 Score=163.46 Aligned_cols=295 Identities=12% Similarity=-0.007 Sum_probs=154.4
Q ss_pred HHHHHHHH-HHHhCC---CC----CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHH
Q 007193 75 KAIKEAFR-FFKLVP---NP----TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146 (613)
Q Consensus 75 ~~~~~A~~-~~~~~~---~~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 146 (613)
+++++|+. .|++.. +. +...+..+...+.+.|++++|...|+.+.+.. +.+..++..+...+.+.|++++|
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHH
Confidence 55666665 555432 11 23345555566666666666666666666543 34455566666666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHhh
Q 007193 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV-VFNALITACGQSGAVDRAFDVLAEMNA 225 (613)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~ 225 (613)
.+.|+++.+.. +.+..++..+...|...|++++|...|+++.... |+.. .+..+... .. .
T Consensus 118 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~-------~~-------~-- 178 (368)
T 1fch_A 118 ISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEG-------AG-------G-- 178 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC------------------------
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHH-------hh-------h--
Confidence 66666655543 3345555566666666666666666666655542 2211 11100000 00 0
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 007193 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG--TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303 (613)
Q Consensus 226 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 303 (613)
..+. ..+..+.. +...|++++|...|+++.+.. +. +..++..+...|.+.|++++|...|+++...... +
T Consensus 179 ----~~~~-~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~ 250 (368)
T 1fch_A 179 ----AGLG-PSKRILGS-LLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-D 250 (368)
T ss_dssp ------------CTTHH-HHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred ----hccc-HHHHHHHH-HhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-C
Confidence 0000 00111222 226666777777776666554 22 4566666666777777777777777666654322 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----------CC
Q 007193 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK----------PT 373 (613)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----------~~ 373 (613)
..++..+...+...|++++|...++.+.+.. +.+..++..+...|.+.|++++|...|++..+.... ..
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 329 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 329 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchh
Confidence 5566666666666666666666666665543 344556666666666666666666666665442100 01
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHH
Q 007193 374 VSTMNALITALCDGDQLPKTMEVLS 398 (613)
Q Consensus 374 ~~~~~~li~~~~~~g~~~~A~~l~~ 398 (613)
..+|..+..+|...|++++|..+++
T Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 330 ENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred hHHHHHHHHHHHHhCChHhHHHhHH
Confidence 4556666666666666666665554
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=3.8e-17 Score=163.79 Aligned_cols=300 Identities=11% Similarity=-0.035 Sum_probs=195.6
Q ss_pred hcCCHHHHHH-HHHHHHHcCCCCch----HHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCCh
Q 007193 37 RQGRISECID-LLEDMERKGLLDMD----KVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDS 108 (613)
Q Consensus 37 ~~g~~~~A~~-l~~~m~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~ 108 (613)
..|++++|+. .|++..+.. |.+ ......++..+...|++++|...|+++. +.+..+|..+...+...|++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFE--EENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ---------CHHHHCCCCCC--SSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhhhhhHHHhcC--CCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH
Confidence 4578899988 887665443 222 2234456777888999999999998753 56788999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (613)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (613)
++|...|+.+.+.. +.+..++..+...|...|++++|.+.|+++.... +.+...+..+... .. .
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-------~~-------~ 178 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG-------AG-------G 178 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC----------------------
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH-------hh-------h
Confidence 99999999999876 6678999999999999999999999999999874 2233333221000 00 0
Q ss_pred HhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 007193 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268 (613)
Q Consensus 189 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~ 268 (613)
..+. ..+..+...+ ..|++++|...|+++.... +-.++..++..+...|.+.|++++|...|+++.+.. +.+
T Consensus 179 ----~~~~-~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~ 250 (368)
T 1fch_A 179 ----AGLG-PSKRILGSLL-SDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PND 250 (368)
T ss_dssp ------------CTTHHHH-HHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred ----hccc-HHHHHHHHHh-hcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCC
Confidence 0000 1111122222 5666677777776665531 111145666667777777777777777777766654 445
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----------CcC
Q 007193 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI----------SVG 338 (613)
Q Consensus 269 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----------~~~ 338 (613)
..+|..+...+.+.|++++|...|+++.+... .+...+..+...|.+.|++++|...++.+.+... +..
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 329 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 329 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchh
Confidence 66777777777777777777777777766533 2556677777777777777777777777665421 112
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHH
Q 007193 339 IISYSSLMGACSNAKNWQKALELYE 363 (613)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~ 363 (613)
..+|..+..+|.+.|+.++|..+++
T Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 330 ENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred hHHHHHHHHHHHHhCChHhHHHhHH
Confidence 5778888888888888888887765
No 22
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.76 E-value=4.8e-19 Score=187.63 Aligned_cols=150 Identities=13% Similarity=0.210 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 007193 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQ---EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (613)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~---~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 168 (613)
..|||++|++|++.|++++|..+|+.|. ..|+.||++|||+||++||+.|++++|.++|++|.+.|+.||.+|||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4589999999999999999999998876 4589999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC------HHHHHHHH
Q 007193 169 IDGCAKAGQ-VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD------HITIGALM 241 (613)
Q Consensus 169 i~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------~~~~~~ll 241 (613)
|.++++.|+ .++|.++|++|.+.|+.||.++|+.++.++.+.+ +++..+++. .++.|+ ..+...|.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv~---P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKVK---PTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGGC---CCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHhC---cccCCCCCCcccccchHHHH
Confidence 999999998 4789999999999999999999999997766543 333333332 233433 45555667
Q ss_pred HHHHhcC
Q 007193 242 KACANAG 248 (613)
Q Consensus 242 ~~~~~~g 248 (613)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 7777655
No 23
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.76 E-value=3.5e-14 Score=149.66 Aligned_cols=397 Identities=10% Similarity=0.064 Sum_probs=281.3
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC
Q 007193 48 LEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124 (613)
Q Consensus 48 ~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 124 (613)
|++..+.+ |.+...+..++.. .+.|++++|..+|+++. +.+...|...+..+.+.|++++|..+|+++... .
T Consensus 2 le~al~~~--P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~ 76 (530)
T 2ooe_A 2 AEKKLEEN--PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--V 76 (530)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--C
T ss_pred hhhHhhhC--CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--C
Confidence 55666666 6666666666664 56788999999999864 457778999999999999999999999999976 4
Q ss_pred CCHHHHHHHHHHH-HHcCChhHHHH----HHHHHHH-CCCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHH
Q 007193 125 ADCKLYTTLITTC-AKSGKVDAMFE----VFHEMVN-AGIEP-NVHTYGALIDGCAK---------AGQVAKAFGAYGIM 188 (613)
Q Consensus 125 ~~~~~~~~li~~~-~~~g~~~~a~~----~~~~m~~-~g~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m 188 (613)
|++..|...+... ...|+.+.|.+ +|+.... .|..| +...|...+....+ .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 6888888777533 45677777665 7776654 35443 56788888877655 78999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHH-------------HccCCHHHHHHHHHHH------hhCC-CCCCCC--------HHHHHHH
Q 007193 189 RSKNVKPDRVVFNALITAC-------------GQSGAVDRAFDVLAEM------NAEV-HPVDPD--------HITIGAL 240 (613)
Q Consensus 189 ~~~g~~p~~~~~~~li~~~-------------~~~g~~~~a~~~~~~m------~~~~-~~~~~~--------~~~~~~l 240 (613)
......+....|....... .+.+++..|..++... .... ..++|+ ...|...
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 8732111123444322211 1234567777766652 2110 013443 2345555
Q ss_pred HHHHHhc----CCh----HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHC
Q 007193 241 MKACANA----GQV----DRAREVYKMIHKYNIKGTPEVYTIAINCCSQ-------TGDWE-------FACSVYDDMTKK 298 (613)
Q Consensus 241 l~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~m~~~ 298 (613)
+...... ++. ..+..+|++..... +.++..|..++..+.+ .|+++ +|..+|++..+.
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 4433221 232 36778898888764 6678899999888876 68877 899999999863
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007193 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI-ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377 (613)
Q Consensus 299 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 377 (613)
-.+-+...|..++..+.+.|++++|..+|+.+.+.. +.+. ..|..++..+.+.|++++|..+|++..+.. +.+...|
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~ 393 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVY 393 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHH
Confidence 122367889999999999999999999999999864 2233 589999999999999999999999998753 2223333
Q ss_pred HHHHHH-HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcC-CCCC--HHHHHHHHHH
Q 007193 378 NALITA-LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG-VIPN--LVMFKCIIGM 453 (613)
Q Consensus 378 ~~li~~-~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g-~~p~--~~~~~~li~~ 453 (613)
...... +...|+.++|..+|++..+.. +-+...|..++..+.+.|+.++|+.+|++....+ ..|+ ...|...+..
T Consensus 394 ~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~ 472 (530)
T 2ooe_A 394 VTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 472 (530)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 322222 346899999999999988752 3367889999999999999999999999999853 3333 3455555543
No 24
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.75 E-value=3.4e-18 Score=181.25 Aligned_cols=118 Identities=16% Similarity=0.167 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007193 305 VFLSALIDFAGHAGKVEAAFEILQEAKN---QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381 (613)
Q Consensus 305 ~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 381 (613)
.||+++|++||+.|++++|.++|..|.+ .|+.||..|||+||++|++.|++++|.++|++|.+.|+.||.+|||+||
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 4666666666666666666666655543 3566666666666666666666666666666666666666666666666
Q ss_pred HHHHcCCCh-hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 007193 382 TALCDGDQL-PKTMEVLSDMKSLGLCPNTITYSILLVACERK 422 (613)
Q Consensus 382 ~~~~~~g~~-~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 422 (613)
.++++.|+. ++|.++|++|.+.|+.||..||++++.++.+.
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 666666653 55666666666666666666666666544443
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.75 E-value=4.6e-16 Score=155.85 Aligned_cols=267 Identities=11% Similarity=-0.064 Sum_probs=187.3
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007193 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (613)
Q Consensus 90 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 169 (613)
.+...|..+...+.+.|++++|...|+.+.+.. +.+..++..+...|.+.|++++|.+.|++..+.. +.+..+|..+.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 355668888999999999999999999999875 5678899999999999999999999999988764 45688899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC-----------HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHH
Q 007193 170 DGCAKAGQVAKAFGAYGIMRSKNVKPD-----------RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238 (613)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 238 (613)
..|...|++++|...|+++.+. .|+ ...+..+...+...|++++|.+.|+++.... +-.++..++.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~ 217 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQT 217 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHH
Confidence 9999999999999999998764 222 1223334667777777888888877776542 1112566777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007193 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (613)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 318 (613)
.+...|.+.|++++|...|+++.+.. +.+..+|..+...|.+.|++++|+..|+++.+..+. +..++..+...|.+.|
T Consensus 218 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 218 GLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCC
Confidence 77777777777777777777777664 455677777777777777777777777777665332 4666777777777777
Q ss_pred CHHHHHHHHHHHHHCCCC-----------cCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 007193 319 KVEAAFEILQEAKNQGIS-----------VGIISYSSLMGACSNAKNWQKALELYE 363 (613)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (613)
++++|...|+++.+.... .+..+|..+..++...|+.+.+..+..
T Consensus 296 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 296 AYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp CCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 777777777766553200 023455555666666666655555443
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.74 E-value=2.5e-16 Score=157.78 Aligned_cols=264 Identities=14% Similarity=0.021 Sum_probs=150.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHH
Q 007193 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244 (613)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~ 244 (613)
|..+...+.+.|++++|...|+++.... +.+..+|..+...+...|++++|...|+++.... +.+..++..+...|
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ---PNNLKALMALAVSY 143 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHH
Confidence 4444444444444444444444444331 2234444444444444444444444444444321 22344444444445
Q ss_pred HhcCChHHHHHHHHHHHhcCCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHH
Q 007193 245 ANAGQVDRAREVYKMIHKYNIK---------GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI-PDEVFLSALIDFA 314 (613)
Q Consensus 245 ~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~ 314 (613)
...|++++|...|+++.+.... .....+..+...+...|++++|...|+++.+.... ++..++..+...+
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 5555555555555444432100 01223445566777777777888777777765432 1466777777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 007193 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394 (613)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 394 (613)
...|++++|...++++.+.. +.+..+++.+...|.+.|++++|...|++..+.. +.+..+|..+...|.+.|++++|.
T Consensus 224 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHH
Confidence 77788888888887777664 4567777788888888888888888888776643 334677778888888888888888
Q ss_pred HHHHHHHhCC---CCC--------CHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 007193 395 EVLSDMKSLG---LCP--------NTITYSILLVACERKDDVEVGLMLLSQ 434 (613)
Q Consensus 395 ~l~~~m~~~g---~~p--------~~~t~~~ll~a~~~~g~~~~a~~~~~~ 434 (613)
+.|+++.+.. ..| +..+|..+..++...|+.+.+..+..+
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 8888776521 000 246677777788888888777766543
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=1.3e-16 Score=157.04 Aligned_cols=290 Identities=15% Similarity=0.143 Sum_probs=129.8
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCC
Q 007193 29 LHSYNRLI-RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKD 107 (613)
Q Consensus 29 ~~~~~~l~-~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 107 (613)
+...+.|+ +.|++++|.+.++++... ..+..++..+.+.|++++|++.|.+. +|...|..+++++...|+
T Consensus 6 ~~a~~~ll~~~~~ld~A~~fae~~~~~-------~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~ 76 (449)
T 1b89_A 6 TSAVQVLIEHIGNLDRAYEFAERCNEP-------AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGN 76 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHccCHHHHHHHHHhCCCh-------HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCC
Confidence 33455666 678899999999998442 24557788888899999999999764 567789999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007193 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (613)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (613)
+++|...++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..
T Consensus 77 ~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~ 147 (449)
T 1b89_A 77 WEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNN 147 (449)
T ss_dssp ----------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999977766664 4557888999999999999999888884 36778999999999999999999999997
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 007193 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267 (613)
Q Consensus 188 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 267 (613)
+ ..|..++.++.+.|++++|.+.+.++ .+..+|..++.+|...|+++.|...... +..
T Consensus 148 a---------~n~~~LA~~L~~Lg~yq~AVea~~KA--------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~ 205 (449)
T 1b89_A 148 V---------SNFGRLASTLVHLGEYQAAVDGARKA--------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVV 205 (449)
T ss_dssp T---------TCHHHHHHHHHTTTCHHHHHHHHHHH--------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTT
T ss_pred h---------hhHHHHHHHHHHhccHHHHHHHHHHc--------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHh
Confidence 7 36889999999999999999999887 2578999999999999999999654443 233
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCc------CH
Q 007193 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA--GKVEAAFEILQEAKNQGISV------GI 339 (613)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~~~~~------~~ 339 (613)
.+.-...++..|.+.|++++|..+++...... .-....|+-+.-+|++- +++.+.++.|.. +.+++| +.
T Consensus 206 ~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~ 282 (449)
T 1b89_A 206 HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQA 282 (449)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTT
T ss_pred CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHH
Confidence 44455578899999999999999999987665 33566677776666653 344455554442 223333 46
Q ss_pred HhHHHHHHHHHhcCCHHHHHHH
Q 007193 340 ISYSSLMGACSNAKNWQKALEL 361 (613)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~ 361 (613)
..|..++-.|.+.++++.|...
T Consensus 283 ~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 283 HLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp TCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhhchHHHHHHH
Confidence 6788888889999999988775
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=1.8e-15 Score=145.75 Aligned_cols=254 Identities=12% Similarity=0.148 Sum_probs=164.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchH-HHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHH
Q 007193 32 YNRLIRQGRISECIDLLEDMERKGLLDMDK-VYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEG 110 (613)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 110 (613)
.......|++..|+..+++..... |.+. .....+.+.+...|++++|+..++...+|+..++..+...+...++.++
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHH
Confidence 344567788888888777654433 3332 2445556677777777777777766555566667777777777777777
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 111 AFQVLRLVQEAGLKA-DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (613)
Q Consensus 111 A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (613)
|++.++.+...+..| +...+..+...+...|++++|.+.+++ +.+...+..++..|.+.|++++|...|+++.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777777777665433 455566666777777777777777766 3566677777777777777777777777776
Q ss_pred hCCCCCCHHHH---HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 007193 190 SKNVKPDRVVF---NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266 (613)
Q Consensus 190 ~~g~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 266 (613)
+. .|+.... ...+..+...|++++|..+|+++... .+.+...++.+..++.+.|++++|...|++..+.+ +
T Consensus 158 ~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p 231 (291)
T 3mkr_A 158 DQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK---CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-S 231 (291)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred hh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 65 2443211 11223333446677777777777653 24456666677777777777777777777766654 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCC
Q 007193 267 GTPEVYTIAINCCSQTGDWEF-ACSVYDDMTKKG 299 (613)
Q Consensus 267 ~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~g 299 (613)
.++.++..++..+...|+.++ +.++++++.+..
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 566667777777777776654 456666666553
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.73 E-value=1.6e-15 Score=149.08 Aligned_cols=278 Identities=10% Similarity=-0.007 Sum_probs=161.3
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007193 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (613)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 170 (613)
+...|..+...+...|++++|..+|+.+.+.. +.+..++..+...+...|++++|.+.|+++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 34456667777888888888888888887764 4567778888888888888888888888887764 446777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHH--HHHhc
Q 007193 171 GCAKAGQVAKAFGAYGIMRSKNVKPDR-VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK--ACANA 247 (613)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~--~~~~~ 247 (613)
.|...|++++|...|+++.... |+. ..+..+... .|+......+.. .+...
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~ 151 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQA------------------------DVDIDDLNVQSEDFFFAAP 151 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------------------------------CCTTSH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHH------------------------HHHHHHHHHHHHhHHHHHc
Confidence 8888888888888888887652 221 122221000 000000111101 13444
Q ss_pred CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007193 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327 (613)
Q Consensus 248 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 327 (613)
|++++|...++++.+.. +.+..++..+...+...|++++|.+.++++.+.... +..++..+...+...|++++|...+
T Consensus 152 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 229 (327)
T 3cv0_A 152 NEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAY 229 (327)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555555554443 334455555555555555555555555555544321 3445555555555556666666555
Q ss_pred HHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHcCCChhHHHHH
Q 007193 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-----------TVSTMNALITALCDGDQLPKTMEV 396 (613)
Q Consensus 328 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~l 396 (613)
+.+.+.. +.+..++..+...|.+.|++++|.+.|++..+..... +...|..+...+.+.|++++|..+
T Consensus 230 ~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 308 (327)
T 3cv0_A 230 NRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELT 308 (327)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 5555443 3345555566666666666666666666554432110 245566666666666666666666
Q ss_pred HHH
Q 007193 397 LSD 399 (613)
Q Consensus 397 ~~~ 399 (613)
+++
T Consensus 309 ~~~ 311 (327)
T 3cv0_A 309 YAQ 311 (327)
T ss_dssp TTC
T ss_pred HHH
Confidence 554
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.72 E-value=2.7e-17 Score=161.91 Aligned_cols=283 Identities=13% Similarity=0.156 Sum_probs=128.4
Q ss_pred hhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 007193 72 KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151 (613)
Q Consensus 72 ~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 151 (613)
.+.|++++|.+++++++.| .+|..+..++.+.|++++|.+.|.+ .+|..+|..++..+...|++++|++.++
T Consensus 14 ~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3557789999999998655 4899999999999999999999964 3577789999999999999999999777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC
Q 007193 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 231 (613)
Q Consensus 152 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 231 (613)
...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp -------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--------
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence 76654 5567888999999999999999888774 367779999999999999999999999875
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007193 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311 (613)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 311 (613)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. . .+.-...++
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~--~ad~l~~lv 214 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---V--HADELEELI 214 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---T--CHHHHHHHH
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---h--CHhhHHHHH
Confidence 15888999999999999999999887 256899999999999999999966555422 2 333455788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHH
Q 007193 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA--KNWQKALELYEHMKSIKLKP------TVSTMNALITA 383 (613)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~~------~~~~~~~li~~ 383 (613)
..|.+.|++++|..+++...... +-....|+.|.-.|++- +++.+..+.|.. +.+++| +...|..+...
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~l 291 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFL 291 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHH
Confidence 88999999999999998887665 55666777777777654 455555555542 222223 34568888888
Q ss_pred HHcCCChhHHHHH
Q 007193 384 LCDGDQLPKTMEV 396 (613)
Q Consensus 384 ~~~~g~~~~A~~l 396 (613)
|.+.++++.|...
T Consensus 292 y~~~~e~d~A~~t 304 (449)
T 1b89_A 292 YDKYEEYDNAIIT 304 (449)
T ss_dssp HHHTTCHHHHHHH
T ss_pred HHhhchHHHHHHH
Confidence 8888998888764
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.72 E-value=2.5e-15 Score=147.66 Aligned_cols=275 Identities=12% Similarity=0.043 Sum_probs=191.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007193 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (613)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 208 (613)
.+..+...+...|++++|.++|+++.+.. +.+..++..+...+.+.|++++|...|+++.+.. +.+..++..+...+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 34445555666666666666666665543 3355556666666666666666666666665542 234555555556666
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHH-HH-HHHhcCCH
Q 007193 209 QSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA-IN-CCSQTGDW 285 (613)
Q Consensus 209 ~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~ 285 (613)
..|++++|.+.++++.... |+ ...+..+... .++......+ .. .+...|++
T Consensus 101 ~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQ----PQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTS----TTTTTC------------------------------------------CCTTSHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC----CccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccH
Confidence 6666666666666655431 11 1111111000 0001111122 22 37788999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365 (613)
Q Consensus 286 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (613)
++|.+.++++.+.... +...+..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++|...|+++
T Consensus 155 ~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999887543 78889999999999999999999999998875 556889999999999999999999999998
Q ss_pred HhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-------------HHHHHHHHHHHhhcCCHHHHHHHH
Q 007193 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-------------TITYSILLVACERKDDVEVGLMLL 432 (613)
Q Consensus 366 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-------------~~t~~~ll~a~~~~g~~~~a~~~~ 432 (613)
.+.. +.+..+|..+...|.+.|++++|.+.++++.+. .|+ ..++..+..++...|+.++|..++
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM--QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 8754 346889999999999999999999999998774 343 678889999999999999999998
Q ss_pred HHHH
Q 007193 433 SQAK 436 (613)
Q Consensus 433 ~~m~ 436 (613)
++..
T Consensus 310 ~~~l 313 (327)
T 3cv0_A 310 AQNV 313 (327)
T ss_dssp TCCS
T ss_pred HHHH
Confidence 7554
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.68 E-value=1.3e-14 Score=139.69 Aligned_cols=248 Identities=13% Similarity=0.109 Sum_probs=139.4
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH
Q 007193 137 CAKSGKVDAMFEVFHEMVNAGIEPNV--HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214 (613)
Q Consensus 137 ~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 214 (613)
....|++..|+..++..... .|+. .....+.++|...|+++.|+..++.. -+|+..++..+...+...++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHH
Confidence 34456666666665554322 2222 23344556666666666666544331 2445555666666666666666
Q ss_pred HHHHHHHHHhhCCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007193 215 RAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293 (613)
Q Consensus 215 ~a~~~~~~m~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 293 (613)
+|.+.++++... +..| +...+..+...+...|++++|.+.+++ +.+...+..++..|.+.|++++|.+.|+
T Consensus 83 ~A~~~l~~ll~~--~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 83 AIVAELDREMSR--SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHS--CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhc--ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 666666665542 1222 344444555666666666666666655 3455666666666666666666666666
Q ss_pred HHHHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 007193 294 DMTKKGVIPDEVFL---SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370 (613)
Q Consensus 294 ~m~~~g~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 370 (613)
++.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|++..+..
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~- 230 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD- 230 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 666553 332111 112222333466666666666666652 4556666666666666666666666666665543
Q ss_pred CCCHHHHHHHHHHHHcCCChhH-HHHHHHHHHh
Q 007193 371 KPTVSTMNALITALCDGDQLPK-TMEVLSDMKS 402 (613)
Q Consensus 371 ~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~ 402 (613)
+.+..++..++..+...|+.++ +.++++++.+
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 2345566666666666666654 4566666655
No 33
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.68 E-value=1.9e-12 Score=142.14 Aligned_cols=378 Identities=15% Similarity=0.176 Sum_probs=272.8
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHc
Q 007193 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGL-LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCAS 104 (613)
Q Consensus 26 ~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 104 (613)
+.-..+...++..|.+.+|++++++..-.+. ++.+......++....+. +......+..+...-+ ..-+...+..
T Consensus 986 eeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~ 1061 (1630)
T 1xi4_A 986 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAIS 1061 (1630)
T ss_pred HHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHh
Confidence 3344455667899999999999999985432 234555555444433332 2333333333333222 3446778899
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007193 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184 (613)
Q Consensus 105 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 184 (613)
.|.+++|..+|++.. -.....+.++. ..+++++|.++.++.. +..+|..+..++...|++++|.+.
T Consensus 1062 lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIds 1127 (1630)
T 1xi4_A 1062 NELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDS 1127 (1630)
T ss_pred CCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHH
Confidence 999999999999863 12223344433 7788999999998652 577899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 007193 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264 (613)
Q Consensus 185 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 264 (613)
|.+. -|...|..++.++.+.|++++|.+.+....+. .++....+.++.+|++.+++++...+. +
T Consensus 1128 YiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~----~~e~~Idt~LafaYAKl~rleele~fI----~-- 1191 (1630)
T 1xi4_A 1128 YIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK----ARESYVETELIFALAKTNRLAELEEFI----N-- 1191 (1630)
T ss_pred HHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----cccccccHHHHHHHHhhcCHHHHHHHH----h--
Confidence 9764 36788889999999999999999999877653 344334446889999999988644442 1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHH
Q 007193 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 344 (613)
Q Consensus 265 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 344 (613)
.++...|..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++. .+..+|..
T Consensus 1192 -~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWke 1255 (1630)
T 1xi4_A 1192 -GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKE 1255 (1630)
T ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHH
Confidence 345567778999999999999999999985 36999999999999999999999876 35789999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHH--hh
Q 007193 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVAC--ER 421 (613)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~--~~ 421 (613)
+-.+|...|++..|......+. .+...+..++..|.+.|.+++|+.+++..... .| ....|+-+..++ .+
T Consensus 1256 v~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~L--eraH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A 1256 VCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred HHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--ChhHhHHHHHHHHHHHhCC
Confidence 9999999999999988776543 56677789999999999999999999887653 34 333454444444 44
Q ss_pred cCCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHh--hHHHHH
Q 007193 422 KDDVEVGLMLLSQAKEDGVIP------NLVMFKCIIGMCSR--RYEKAR 462 (613)
Q Consensus 422 ~g~~~~a~~~~~~m~~~g~~p------~~~~~~~li~~~~~--~~~~a~ 462 (613)
.++..++.++|..-. ++.| +...|.-++-.|.+ .+++|-
T Consensus 1329 peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1329 PQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 555556666655322 2322 35567777777654 444444
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.68 E-value=4.2e-14 Score=146.86 Aligned_cols=213 Identities=10% Similarity=-0.025 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhCC------------CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc-----C-
Q 007193 61 KVYHARFFNVCKSQKAIKEAFRFFKLVP------------NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA-----G- 122 (613)
Q Consensus 61 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----g- 122 (613)
..++..++.++...|+.++|++.|++.. +....+|+.+..+|...|++++|...++...+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 3444555566666666666666665421 123456666666677777777776666655432 0
Q ss_pred C-CCCHHHHHHHHHHHHHc--CChhHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHhCCCCCC
Q 007193 123 L-KADCKLYTTLITTCAKS--GKVDAMFEVFHEMVNAGIEPNVHTYGALIDG---CAKAGQVAKAFGAYGIMRSKNVKPD 196 (613)
Q Consensus 123 ~-~~~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~ 196 (613)
. .....++..+..++.+. +++++|.+.|++..+.. +-+...+..+... +...++.++|++.|++..+.. +.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 0 11234444444444443 34666777776666543 2234444444333 233455566666666665542 233
Q ss_pred HHHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHH
Q 007193 197 RVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272 (613)
Q Consensus 197 ~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 272 (613)
..++..+...+.. .++.++|.+.+++.... .+.+..++..+...|.+.|++++|...|++..+.. +.+..++
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~---~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK---APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh---CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 4444444433333 24555666666665542 13345556666666677777777777776666654 4445555
Q ss_pred HHHHHHH
Q 007193 273 TIAINCC 279 (613)
Q Consensus 273 ~~li~~~ 279 (613)
..+...|
T Consensus 285 ~~lg~~y 291 (472)
T 4g1t_A 285 CQIGCCY 291 (472)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555444
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.66 E-value=7e-14 Score=145.14 Aligned_cols=210 Identities=10% Similarity=-0.035 Sum_probs=148.3
Q ss_pred HHHHHHH----hcCCHHHHHHHHHHHHHc-------CCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC-------C--
Q 007193 30 HSYNRLI----RQGRISECIDLLEDMERK-------GLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-------N-- 89 (613)
Q Consensus 30 ~~~~~l~----~~g~~~~A~~l~~~m~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~-- 89 (613)
..||.|. ..|++++|++.|++..+. ...+.....+..++.++...|++++|...|++.. .
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 3455443 789999999999886542 1124455566778888889999999998887542 1
Q ss_pred --CCHHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHHcCChhHHHHHHHHHHHCCCCCCH
Q 007193 90 --PTLSTFNMLMSVCAS--SKDSEGAFQVLRLVQEAGLKADCKLYTTLITT---CAKSGKVDAMFEVFHEMVNAGIEPNV 162 (613)
Q Consensus 90 --~~~~~~~~li~~~~~--~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~---~~~~g~~~~a~~~~~~m~~~g~~~~~ 162 (613)
....+++.+..++.. .+++++|...|++..+.. +.++..+..+..+ +...++.++|++.+++..+.. +.+.
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~ 209 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQ 209 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCH
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccch
Confidence 234566665555544 457999999999998875 4456666555554 445678889999999887764 4466
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHH
Q 007193 163 HTYGALIDGCAK----AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238 (613)
Q Consensus 163 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 238 (613)
.++..+...+.. .++.++|.+.+++..... +.+..++..+...|...|++++|...+.+..... +.+..++.
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~ 285 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI---PNNAYLHC 285 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC---CChHHHHH
Confidence 667666655554 467889999999987763 4567788999999999999999999999988642 34456666
Q ss_pred HHHHHHH
Q 007193 239 ALMKACA 245 (613)
Q Consensus 239 ~ll~~~~ 245 (613)
.+...|.
T Consensus 286 ~lg~~y~ 292 (472)
T 4g1t_A 286 QIGCCYR 292 (472)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665554
No 36
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.62 E-value=1.1e-11 Score=136.11 Aligned_cols=313 Identities=12% Similarity=0.133 Sum_probs=233.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHH
Q 007193 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGA 111 (613)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 111 (613)
...++..|.+++|..+|++... . .. . +..+....+++++|.++.+++. ++.+|..+..++.+.|++++|
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~----~-~~-A---~~VLie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV----N-TS-A---VQVLIEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC----H-HH-H---HHHHHHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHH
Confidence 4556688999999999988631 1 11 1 1112336678899999888774 467788999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007193 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (613)
Q Consensus 112 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (613)
...|.+. .|...|..++..+.+.|++++|.+.|....+.. ++....+.++.+|++.+++++.... ..
T Consensus 1125 IdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~- 1191 (1630)
T 1xi4_A 1125 IDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN- 1191 (1630)
T ss_pred HHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh-
Confidence 9998553 467788889999999999999999998877653 4444444588889999888853333 22
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHH
Q 007193 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271 (613)
Q Consensus 192 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 271 (613)
.|+...|..+...|...|++++|..+|... ..|..+...|.+.|+++.|.+.+++. .+..+
T Consensus 1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~a 1252 (1630)
T 1xi4_A 1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRT 1252 (1630)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHH
Confidence 446667777888899999999999999874 26888899999999999999988876 33478
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHh
Q 007193 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (613)
Q Consensus 272 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 351 (613)
|..+..+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++...... +-....|+-|...|++
T Consensus 1253 Wkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1253 WKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHh
Confidence 888888899999988888766542 2255667788999999999999999998777654 4455566666666655
Q ss_pred --cCCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHcCCChhHHHH
Q 007193 352 --AKNWQKALELYEHMKSIKLKP------TVSTMNALITALCDGDQLPKTME 395 (613)
Q Consensus 352 --~g~~~~A~~~~~~m~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~ 395 (613)
.+++.++.+.|..-.. ++| +...|..++..|.+.|+++.|..
T Consensus 1327 y~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1327 FKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred CCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 4556666666664332 222 46679999999999999998883
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.59 E-value=4.3e-13 Score=126.59 Aligned_cols=92 Identities=12% Similarity=-0.012 Sum_probs=36.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 007193 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (613)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 386 (613)
+..+...+...|++++|...++...+.. +.+..++..+...|.+.|++++|...|++..+.. +.+...|..+...|.+
T Consensus 142 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 219 (258)
T 3uq3_A 142 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIA 219 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHH
Confidence 3333333444444444444444433332 2233334444444444444444444444443321 1223344444444444
Q ss_pred CCChhHHHHHHHHH
Q 007193 387 GDQLPKTMEVLSDM 400 (613)
Q Consensus 387 ~g~~~~A~~l~~~m 400 (613)
.|++++|.+.+++.
T Consensus 220 ~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 220 VKEYASALETLDAA 233 (258)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHH
Confidence 44444444444443
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.58 E-value=4.4e-13 Score=126.49 Aligned_cols=224 Identities=9% Similarity=0.024 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC--CCC----HHHHH
Q 007193 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI--EPN----VHTYG 166 (613)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~----~~~~~ 166 (613)
..|..+...+...|++++|...|+.+.+.. .+..++..+...+...|++++|.+.|++..+... .++ ..+|.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 445566666667777777777777766665 5566666666777777777777777766654310 011 35566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHh
Q 007193 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246 (613)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~ 246 (613)
.+...|.+.|++++|...|++.... .|+. ..+...|++++|.+.++.+... .+.+...+..+...+..
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV---NPEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc---CcchHHHHHHHHHHHHH
Confidence 6666666666666666666666653 3332 2233445556666666665542 12223445555555555
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007193 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326 (613)
Q Consensus 247 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 326 (613)
.|++++|...|++..+.. +.+..+|..+...+.+.|++++|...|++..+.... +...+..+...+...|++++|...
T Consensus 152 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHH
Confidence 666666666665555543 334455555555555555555555555555544321 344455555555555555555555
Q ss_pred HHHHHH
Q 007193 327 LQEAKN 332 (613)
Q Consensus 327 ~~~~~~ 332 (613)
++...+
T Consensus 230 ~~~a~~ 235 (258)
T 3uq3_A 230 LDAART 235 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.58 E-value=3.9e-13 Score=138.16 Aligned_cols=344 Identities=11% Similarity=0.017 Sum_probs=204.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHH---HHHHHHHHhCCCCCHHHHHHHHHHHHcC
Q 007193 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI---KEAFRFFKLVPNPTLSTFNMLMSVCASS 105 (613)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~ 105 (613)
...-..+.+.|++++|.++|++..+.|.. ... ..++.++...|+. ++|+..|++....++..+..+...+...
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g~~--~A~--~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELGYS--EAQ--VGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCC--TGG--GTCC----------------------------CHHHHHHHHHTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCH--HHH--HHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 44556677899999999999999887732 211 1233334445656 8999999887665777777777755555
Q ss_pred C-----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007193 106 K-----DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (613)
Q Consensus 106 ~-----~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~---~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 177 (613)
+ ++++|+..|+...+.|. ++ .+..|...|...+..+ ++.+.+......| +...+..|...|...+.
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTC
T ss_pred CCCCCcCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 5 67889999988888763 33 5666777776665443 3455555555443 34566677777777775
Q ss_pred HHHHH----HHHHHHHhCCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhc---
Q 007193 178 VAKAF----GAYGIMRSKNVKPDRVVFNALITACGQSG---AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA--- 247 (613)
Q Consensus 178 ~~~A~----~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~--- 247 (613)
++++. .+++..... .|+ .+..|...|...| +.++|.+.|.+....+ +++...+..+...|...
T Consensus 157 ~~~~~~~a~~~~~~a~~~--~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g---~~~a~~~~~Lg~~y~~g~~~ 229 (452)
T 3e4b_A 157 YDQHLDDVERICKAALNT--TDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRG---TVTAQRVDSVARVLGDATLG 229 (452)
T ss_dssp GGGGHHHHHHHHHHHTTT--CTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT---CSCHHHHHHHHHHHTCGGGS
T ss_pred cccCHHHHHHHHHHHHcC--CHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCC
Confidence 44443 334333322 233 6667777777788 7888888888877642 44555445666666544
Q ss_pred -CChHHHHHHHHHHHhcCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----
Q 007193 248 -GQVDRAREVYKMIHKYNIKGTPEVYTIAINC-C--SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG----- 318 (613)
Q Consensus 248 -g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----- 318 (613)
+++++|...|++.. .+ ++..+..+... | ...+++++|++.|++..+.| +...+..+...|. .|
T Consensus 230 ~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~ 301 (452)
T 3e4b_A 230 TPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPA 301 (452)
T ss_dssp SCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCC
T ss_pred CCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCC
Confidence 67888888888776 33 34666666666 3 45778888888888887776 4556666666665 44
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCCh
Q 007193 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQL 390 (613)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~ 390 (613)
++++|...|.... . -++..+..|...|.. ..+.++|...|++..+.| +......|...|.. ..+.
T Consensus 302 d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~ 374 (452)
T 3e4b_A 302 DAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDP 374 (452)
T ss_dssp CHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCH
T ss_pred CHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCH
Confidence 7788888877766 3 355666666666665 337777888887777654 23334445545543 3456
Q ss_pred hHHHHHHHHHHhCC
Q 007193 391 PKTMEVLSDMKSLG 404 (613)
Q Consensus 391 ~~A~~l~~~m~~~g 404 (613)
.+|...|+...+.|
T Consensus 375 ~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 375 LNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCC
Confidence 67777776666654
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.56 E-value=4.9e-13 Score=122.82 Aligned_cols=57 Identities=16% Similarity=-0.042 Sum_probs=22.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365 (613)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (613)
+..+...+...|++++|...|++..+.. .+...+..+...|...|++++|...|++.
T Consensus 121 ~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a 177 (217)
T 2pl2_A 121 HLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKA 177 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333333333344444444443333333 23333333333344444444444444333
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.56 E-value=4.3e-13 Score=123.18 Aligned_cols=199 Identities=13% Similarity=-0.055 Sum_probs=143.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007193 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311 (613)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 311 (613)
++...+..+...+.+.|++++|...|++..+.+ +.+...+..+...+.+.|++++|+..|++..+..+. +...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 445566666666777777777777777776655 555666777777777777777777777777665433 556666666
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007193 312 DFAGHA-----------GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380 (613)
Q Consensus 312 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 380 (613)
..+... |++++|...++...+.. +.+...+..+...|...|++++|...|++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 667776 99999999999988875 4567888899999999999999999999998876 788899999
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 007193 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436 (613)
Q Consensus 381 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 436 (613)
...|...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999988752 3367788888899999999999999888765
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.53 E-value=6.4e-12 Score=118.18 Aligned_cols=201 Identities=11% Similarity=0.011 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007193 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (613)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 171 (613)
...|..+...+...|++++|...|+.+.+.. +.+..++..+...|...|++++|.+.|+++.+.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4567777777888888888888888877664 4467777777778888888888888887776653 3456677777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCCh
Q 007193 172 CAKAGQVAKAFGAYGIMRSKNVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250 (613)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~ 250 (613)
|...|++++|.+.|+++...+..| +...+..+...+...|++++|.+.+.+..... +.+...+..+...+...|++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN---RNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHcCCH
Confidence 777778888887777776632334 34456666677777777777777777766531 23456666667777777777
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 251 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (613)
++|...++.+.+.. +.+...+..+...+...|++++|.+.++++.+.
T Consensus 192 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 192 VPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 77777777766654 445566666677777777777777777776665
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.52 E-value=1.2e-11 Score=113.88 Aligned_cols=201 Identities=10% Similarity=-0.020 Sum_probs=112.8
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007193 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (613)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 170 (613)
++..|..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.|++..+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 34455556666666666666666666666543 3445566666666666666666666666665543 334555666666
Q ss_pred HHHhc-CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcC
Q 007193 171 GCAKA-GQVAKAFGAYGIMRSKNVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248 (613)
Q Consensus 171 ~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g 248 (613)
.+... |++++|...|+++.+.+..|+ ...+..+...+...|++++|...+.++.... +.+...+..+...+.+.|
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ---PQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHT
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCchHHHHHHHHHHHcC
Confidence 66666 666666666666655222222 3445555555666666666666666555421 223445555555555566
Q ss_pred ChHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007193 249 QVDRAREVYKMIHKYNIK-GTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (613)
Q Consensus 249 ~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 297 (613)
++++|...++.+.+.. + .+...+..+...+...|+.+.+..+++.+.+
T Consensus 162 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp CHHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 6666666665555443 2 3444555555555555555555555555543
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.52 E-value=9.8e-12 Score=114.43 Aligned_cols=202 Identities=12% Similarity=0.006 Sum_probs=118.5
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007193 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205 (613)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 205 (613)
+...+..+...+...|++++|.+.|+++.+.. +.+..++..+...|...|++++|...|++..... +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 34556666666677777777777777666543 3345666666666677777777777776666542 334556666666
Q ss_pred HHHcc-CCHHHHHHHHHHHhhCCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 007193 206 ACGQS-GAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283 (613)
Q Consensus 206 ~~~~~-g~~~~a~~~~~~m~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 283 (613)
.+... |++++|...++++... +..| +...+..+...+...|++++|...|+++.+.. +.+...+..+...+.+.|
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALAD--PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTS--TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHhcCcHHHHHHHHHHHHcC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcC
Confidence 66666 6666666666666541 1122 24455555666666666666666666665543 334555666666666666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007193 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (613)
Q Consensus 284 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (613)
++++|...++++.+.....+...+..+...+...|+.+.+..+++.+.+
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 6666666666655543212444455555555555555555555555544
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.51 E-value=1.4e-11 Score=115.79 Aligned_cols=201 Identities=14% Similarity=0.075 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007193 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206 (613)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 206 (613)
...+..+...+...|++++|.+.|+++.+.. +.+..++..+...|...|++++|...|+++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4566777777788888888888888877653 4466777777788888888888888888777653 3356677777777
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 007193 207 CGQSGAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285 (613)
Q Consensus 207 ~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 285 (613)
+...|++++|.+.++++... +..| +...+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQD--TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhHHHHHHHHHHHHHhC--ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCH
Confidence 77788888888888777651 1233 34566666677777777777777777776654 44566677777777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (613)
Q Consensus 286 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (613)
++|...++++.+... .+...+..+...+...|+.++|...++.+.+.
T Consensus 192 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 192 VPARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 777777777666543 24555666666666677777777777766655
No 46
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.50 E-value=7.4e-12 Score=124.68 Aligned_cols=247 Identities=10% Similarity=0.065 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007193 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-VDAMFEVFHEMVNAGIEPNVHTYGALID 170 (613)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~li~ 170 (613)
...|+.+...+.+.|++++|+..++.+.+.. +-+..+|+.+..++...|+ +++|++.|++..+.. +.+...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4567777777888888888888888888765 4567778888888888886 888888888887764 446777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHh-cCC
Q 007193 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN-AGQ 249 (613)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~-~g~ 249 (613)
.+.+.|++++|+..|+++.+.. +-+...|..+..++.+.|++++|+..|+++.... +.+...|+.+..++.+ .|.
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~---P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED---VRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcCc
Confidence 8888888888888888887653 3456777777778888888888888888877642 3456677777777777 555
Q ss_pred hHHH-----HHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----
Q 007193 250 VDRA-----REVYKMIHKYNIKGTPEVYTIAINCCSQTG--DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG---- 318 (613)
Q Consensus 250 ~~~A-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---- 318 (613)
.++| ...|++....+ +.+...|+.+...+.+.| ++++|++.+.++ +.. ..+...+..+...|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccc
Confidence 4666 46677776655 455667777777777766 467777777776 332 225566666666666653
Q ss_pred -----CHHHHHHHHHHH-HHCCCCcCHHhHHHHHHH
Q 007193 319 -----KVEAAFEILQEA-KNQGISVGIISYSSLMGA 348 (613)
Q Consensus 319 -----~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~ 348 (613)
..++|..+++.+ .+.. +.....|..+...
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~ 362 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRS 362 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 246677777766 4432 3333444444433
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.50 E-value=5.7e-13 Score=127.17 Aligned_cols=216 Identities=11% Similarity=-0.030 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHhCCC-------CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 007193 75 KAIKEAFRFFKLVPN-------PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147 (613)
Q Consensus 75 ~~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 147 (613)
+++++|+..|+++.. .+..+|..+...+...|++++|...|+.+.+.. +.+..++..+...|...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 445555555544321 134456666666777777777777777776654 445666777777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 007193 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227 (613)
Q Consensus 148 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 227 (613)
+.|++..+.. +.+..++..+...|.+.|++++|...|+++.+. .|+.......+..+...|++++|...+.+.....
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 7777766653 335566667777777777777777777776654 3333333334444455566667766665554421
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK---GTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 228 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (613)
+++...+ .++..+...++.++|...+......... .+..++..+...|.+.|++++|...|++....
T Consensus 175 ---~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 175 ---DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp ---CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ---CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 2232232 2445555556666666666555433210 01345555666666666666666666666554
No 48
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.50 E-value=7.3e-12 Score=119.29 Aligned_cols=159 Identities=12% Similarity=-0.010 Sum_probs=64.5
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccC
Q 007193 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD--RVVFNALITACGQSG 211 (613)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g 211 (613)
...+...|++++|.+.|++..+.. +.+..++..+...|...|++++|+..|++..+.+..|+ ..+|..+...+...|
T Consensus 10 a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 10 ADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence 334444444444444444444332 12223444444444444444444444444443211111 122344444444444
Q ss_pred CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007193 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291 (613)
Q Consensus 212 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 291 (613)
++++|.+.|++..... +.+..++..+...|...|++++|...|++..+.. +.+..+|..+...+...+++++|.+.
T Consensus 89 ~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRD---TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp CHHHHHHHHHHHHHHS---TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444443321 1223344444444444444444444444444332 22333444443122222344444444
Q ss_pred HHHHHH
Q 007193 292 YDDMTK 297 (613)
Q Consensus 292 ~~~m~~ 297 (613)
|+++.+
T Consensus 165 ~~~a~~ 170 (272)
T 3u4t_A 165 FVKVLE 170 (272)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.50 E-value=5.5e-12 Score=120.15 Aligned_cols=234 Identities=12% Similarity=0.019 Sum_probs=121.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHH
Q 007193 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244 (613)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~ 244 (613)
+......+...|++++|+..|++..+.. +.+...+..+...+...|++++|.+.+++.............++..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 4445556666677777777777666542 223335566666666667777777666666542100011123355566666
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007193 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324 (613)
Q Consensus 245 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 324 (613)
...|++++|...|++..+.+ +.+..+|..+...|...|++++|...|++..+.... +...+..+...+...+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666554 334456666666666666666666666665554222 3444444442233334556666
Q ss_pred HHHHHHHHCCCCcCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHhCC-CCCC------HHHHHHHHHHHHcCCChhHHH
Q 007193 325 EILQEAKNQGISVGIISYSSLMGACSNAKN---WQKALELYEHMKSIK-LKPT------VSTMNALITALCDGDQLPKTM 394 (613)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~-~~~~------~~~~~~li~~~~~~g~~~~A~ 394 (613)
..++.+.+.. +.+...+..+...+...|+ +++|...|++..+.. -.|+ ..+|..+...|.+.|++++|.
T Consensus 163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 6655555543 2234444445555555454 444554444443210 0011 133444444555555555555
Q ss_pred HHHHHHHh
Q 007193 395 EVLSDMKS 402 (613)
Q Consensus 395 ~l~~~m~~ 402 (613)
+.|++..+
T Consensus 242 ~~~~~al~ 249 (272)
T 3u4t_A 242 AAWKNILA 249 (272)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555444
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.49 E-value=2.1e-12 Score=120.60 Aligned_cols=202 Identities=13% Similarity=0.062 Sum_probs=128.3
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007193 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (613)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 170 (613)
....|..+...+...|++++|...|+.+.+.. +.+..++..+...+...|++++|.+.|++..+.. +.+..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 45566666777777788888888888777653 4467777777777788888888888887777653 345667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCCh
Q 007193 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250 (613)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~ 250 (613)
.|...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++... .+.+...+..+...+.+.|++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL---NENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHcCCH
Confidence 7777788888888777776653 345666777777777777777777777776653 133556666677777777777
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007193 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (613)
Q Consensus 251 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 299 (613)
++|...|+++.+.. +.+..++..+...|.+.|++++|.+.++++.+..
T Consensus 176 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 176 DEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 77777777776654 4456667777777777777777777777776653
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.49 E-value=1.2e-10 Score=111.00 Aligned_cols=222 Identities=12% Similarity=-0.001 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCCCHHHH
Q 007193 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITI 237 (613)
Q Consensus 162 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 237 (613)
..++..+...|...|++++|...|++..+.+ +...+..+...|.. .+++++|.+.|++.... .+...+
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-----~~~~a~ 77 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-----NYSNGC 77 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-----CCHHHH
Confidence 3344444444444555555555555444421 23344444444444 45555555555444432 133444
Q ss_pred HHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007193 238 GALMKACAN----AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVFLSA 309 (613)
Q Consensus 238 ~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 309 (613)
..+...|.. .+++++|...|++..+.+ +..++..+...|.. .+++++|+..|++..+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 444444444 555555555555544433 33444555555554 555555555555555443 2334444
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007193 310 LIDFAGH----AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALI 381 (613)
Q Consensus 310 li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 381 (613)
+...|.. .+++++|...++...+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 4444444 455555555555554443 23444445555555 555555555555555432 244444455
Q ss_pred HHHHc----CCChhHHHHHHHHHHhC
Q 007193 382 TALCD----GDQLPKTMEVLSDMKSL 403 (613)
Q Consensus 382 ~~~~~----~g~~~~A~~l~~~m~~~ 403 (613)
..|.+ .+++++|.+.|++..+.
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 55555 55555555555555443
No 52
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.49 E-value=1.4e-12 Score=124.40 Aligned_cols=222 Identities=11% Similarity=-0.011 Sum_probs=137.5
Q ss_pred cCCChHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007193 104 SSKDSEGAFQVLRLVQEAGL---KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180 (613)
Q Consensus 104 ~~~~~~~A~~~~~~m~~~g~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 180 (613)
..|++++|+..++.+.+... +.+..++..+...+...|++++|.+.|++..+.. +.+..+|..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 34677788888887776531 1135567777777778888888888888777654 3456777777777777888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007193 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260 (613)
Q Consensus 181 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 260 (613)
|...|++..+.. +.+..++..+...+...|++++|...|+++... .|+.......+..+...|++++|...++..
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD----DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 888887777652 334566777777777777777777777777653 344333334444455567777777777666
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP---DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (613)
Q Consensus 261 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (613)
.... +++...+. ++..+...++.++|...+.......... +...+..+...|.+.|++++|...++...+.
T Consensus 171 ~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 171 FEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 5543 33333333 5555566666666666666654432110 1244455555555555555555555555544
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.49 E-value=9.7e-11 Score=111.65 Aligned_cols=224 Identities=11% Similarity=-0.016 Sum_probs=196.3
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCHHH
Q 007193 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN----AGQVDRAREVYKMIHKYNIKGTPEV 271 (613)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~ 271 (613)
+..++..+...+...|++++|.+.|.+... +.+...+..+...|.. .+++++|...|++..+.+ ++.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD-----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 567788888899999999999999999886 2356778888899999 999999999999998876 6788
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHhHH
Q 007193 272 YTIAINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH----AGKVEAAFEILQEAKNQGISVGIISYS 343 (613)
Q Consensus 272 ~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 343 (613)
+..+...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|...++...+.+ +...+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 9999999999 999999999999999875 67888889999999 999999999999999876 567788
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 007193 344 SLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKSLGLCPNTITYSIL 415 (613)
Q Consensus 344 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 415 (613)
.+...|.. .+++++|...|++..+. .+...+..+...|.. .+++++|++.|++..+.+ +...+..+
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 224 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDL---KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNL 224 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 88888888 99999999999999875 357788889999999 999999999999998864 36677778
Q ss_pred HHHHhh----cCCHHHHHHHHHHHHHcC
Q 007193 416 LVACER----KDDVEVGLMLLSQAKEDG 439 (613)
Q Consensus 416 l~a~~~----~g~~~~a~~~~~~m~~~g 439 (613)
...+.. .+++++|.+.+++..+.|
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 888888 999999999999998865
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.48 E-value=1.1e-11 Score=123.54 Aligned_cols=248 Identities=11% Similarity=0.031 Sum_probs=181.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007193 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ-VAKAFGAYGIMRSKNVKPDRVVFNALIT 205 (613)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~ 205 (613)
...|..+...+.+.|++++|++.|++.++.. +-+..+|+.+...+...|+ +++|+..|++..... +-+...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4567777788888899999999998888764 4467788888888888886 999999998888763 346778888888
Q ss_pred HHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCC
Q 007193 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ-TGD 284 (613)
Q Consensus 206 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~ 284 (613)
++...|++++|+..|+++.... +.+...|..+..++.+.|++++|...|+++.+.+ +.+...|+.+...+.+ .|.
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld---P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD---AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC---ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCc
Confidence 8888888888888888887642 4467788888888888888888888888888876 5677888888888888 555
Q ss_pred HHHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcC----
Q 007193 285 WEFA-----CSVYDDMTKKGVIPDEVFLSALIDFAGHAG--KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK---- 353 (613)
Q Consensus 285 ~~~a-----~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---- 353 (613)
.++| +..|++....... +...|..+...+...| ++++|.+.+..+ +. .+.+...+..+...|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccc
Confidence 4666 4777777765443 5667777777777766 577777777776 32 3455667777777777763
Q ss_pred -----CHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHH
Q 007193 354 -----NWQKALELYEHM-KSIKLKPTVSTMNALITAL 384 (613)
Q Consensus 354 -----~~~~A~~~~~~m-~~~~~~~~~~~~~~li~~~ 384 (613)
..++|.++|+++ .+.. +.....|..+...+
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 247777777777 4432 12344555555444
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.48 E-value=3.4e-12 Score=119.19 Aligned_cols=61 Identities=10% Similarity=0.050 Sum_probs=24.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007193 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (613)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (613)
.+..+...+.+.|++++|...|+++.+.. +.+..+|..+...|.+.|++++|.+.++++.+
T Consensus 161 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 161 ARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 33333334444444444444444333321 12233444444444444444444444444433
No 56
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.46 E-value=9e-12 Score=127.95 Aligned_cols=342 Identities=11% Similarity=-0.020 Sum_probs=231.9
Q ss_pred HHHHHhhhHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHcCCCh---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-
Q 007193 67 FFNVCKSQKAIKEAFRFFKLVP-NPTLSTFNMLMSVCASSKDS---EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG- 141 (613)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~~~~---~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g- 141 (613)
+.....+.|++++|+++|.+.. ..++..+..+...+...|+. ++|...|+...+. ++..+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCC
Confidence 4455677899999999998764 23455666666777778888 8999999988854 5556666766555555
Q ss_pred ----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC---
Q 007193 142 ----KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA---KAFGAYGIMRSKNVKPDRVVFNALITACGQSG--- 211 (613)
Q Consensus 142 ----~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--- 211 (613)
++++|.+.|++..+.|. + ..+..|...|...+..+ ++.+.+......| +......|...|...+
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~-~--~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGE-G--NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTC-S--SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred CCCcCHHHHHHHHHHHHHCCC-H--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence 77899999999998762 2 36777888887765543 4555565555555 2345556666777666
Q ss_pred -CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc----C
Q 007193 212 -AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG---QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT----G 283 (613)
Q Consensus 212 -~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g 283 (613)
..+.+..++...... .|+ .+..|...|...| +.++|.+.|++..+.+ +++...+..+...|... +
T Consensus 159 ~~~~~a~~~~~~a~~~----~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 159 QHLDDVERICKAALNT----TDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp GGHHHHHHHHHHHTTT----CTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSC
T ss_pred cCHHHHHHHHHHHHcC----CHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCC
Confidence 455566666655432 344 7788888899999 8999999999999988 66666667788877665 7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcC-----CH
Q 007193 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDF-A--GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK-----NW 355 (613)
Q Consensus 284 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~ 355 (613)
++++|++.|++.. .| +...+..+... + ...++.++|...|++..+.| +...+..|...|. .| ++
T Consensus 232 d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 232 DEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp CHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred CHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCH
Confidence 9999999999987 43 44555666555 3 46899999999999999887 6777888888887 55 99
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHHH
Q 007193 356 QKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER----KDDVEV 427 (613)
Q Consensus 356 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~ 427 (613)
++|...|++.. ..+...+..|...|.. ..++++|.+.|++..+.|. |+. ...+...|.. ..+.++
T Consensus 304 ~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-~~A--~~~Lg~~y~~G~g~~~d~~~ 376 (452)
T 3e4b_A 304 KAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-NSA--DFAIAQLFSQGKGTKPDPLN 376 (452)
T ss_dssp HHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-TTH--HHHHHHHHHSCTTBCCCHHH
T ss_pred HHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-HHH--HHHHHHHHHhCCCCCCCHHH
Confidence 99999999877 3567777788877776 3489999999999988763 333 3344444442 568999
Q ss_pred HHHHHHHHHHcCC
Q 007193 428 GLMLLSQAKEDGV 440 (613)
Q Consensus 428 a~~~~~~m~~~g~ 440 (613)
|..+++...+.|.
T Consensus 377 A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 377 AYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCC
Confidence 9999999998774
No 57
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.43 E-value=2.6e-09 Score=113.59 Aligned_cols=404 Identities=8% Similarity=0.010 Sum_probs=267.1
Q ss_pred hHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHH---HHHHHHHHHhCC-----CCCHHHH
Q 007193 28 QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA---IKEAFRFFKLVP-----NPTLSTF 95 (613)
Q Consensus 28 ~~~~~~~l~----~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~-----~~~~~~~ 95 (613)
+..+|..|+ +.+.++.|+.+|+++...- |....++...+..-.+.+. ++.+..+|++.. +|++..|
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF--PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 455666665 5789999999999999875 6666666667777777788 999999999754 2788899
Q ss_pred HHHHHHHHcCCCh--------HHHHHHHHHHHH-cCC-CC-CHHHHHHHHHHHH---------HcCChhHHHHHHHHHHH
Q 007193 96 NMLMSVCASSKDS--------EGAFQVLRLVQE-AGL-KA-DCKLYTTLITTCA---------KSGKVDAMFEVFHEMVN 155 (613)
Q Consensus 96 ~~li~~~~~~~~~--------~~A~~~~~~m~~-~g~-~~-~~~~~~~li~~~~---------~~g~~~~a~~~~~~m~~ 155 (613)
..-+.-..+.++. +...++|+.... .|. .+ +...|...+.... ..++++.+.++|+..+.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 8888766554443 334577776554 465 44 4678888777654 23457788999999885
Q ss_pred CCCCCCHHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHh--CCC----C-----------C-----C---H
Q 007193 156 AGIEPNVHTYGALIDGCAK-------------AGQVAKAFGAYGIMRS--KNV----K-----------P-----D---R 197 (613)
Q Consensus 156 ~g~~~~~~~~~~li~~~~~-------------~g~~~~A~~~~~~m~~--~g~----~-----------p-----~---~ 197 (613)
.....-..+|......-.. ..+++.|...+.++.. .++ + | + .
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 3222122344322211111 1123445555544321 111 1 1 0 1
Q ss_pred HHHHHHHHHHHccC-------CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHH-HHHHHHHhcCCCCCH
Q 007193 198 VVFNALITACGQSG-------AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR-EVYKMIHKYNIKGTP 269 (613)
Q Consensus 198 ~~~~~li~~~~~~g-------~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~-~~~~~~~~~~~~~~~ 269 (613)
..|...+.---..+ ..+.+..+|++.... ++-+...|-..+..+.+.|+.++|. .+|++.... ++.+.
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~---~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~ 378 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH---VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSA 378 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCH
Confidence 33444444322222 123455678777753 3446677777788888888888886 999888764 36677
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------CCC------------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 007193 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGV---------IPD------------EVFLSALIDFAGHAGKVEAAFEILQ 328 (613)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~---------~p~------------~~~~~~li~~~~~~g~~~~a~~~~~ 328 (613)
..|-..+...-+.|+++.|.++|+.+..... .|+ ...|...+....+.|..+.|..+|.
T Consensus 379 ~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~ 458 (679)
T 4e6h_A 379 VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG 458 (679)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7788888888899999999999998875310 132 2357777777778888999999999
Q ss_pred HHHHCCCCcCHHhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 007193 329 EAKNQGISVGIISYSSLMGACSNA-KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (613)
Q Consensus 329 ~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 407 (613)
...+........+|...+..-.+. ++.+.|.++|+...+. .+.+...|...+......|+.+.|..+|++.......+
T Consensus 459 ~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~ 537 (679)
T 4e6h_A 459 KCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDS 537 (679)
T ss_dssp HHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSST
T ss_pred HHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCH
Confidence 988761122233444333333444 4489999999988765 34567777888888888899999999999988753212
Q ss_pred --CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 007193 408 --NTITYSILLVACERKDDVEVGLMLLSQAKED 438 (613)
Q Consensus 408 --~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (613)
....|...+.--.+.|+.+.+.++.+++.+.
T Consensus 538 ~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 538 HLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp THHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456778888888899999999999999874
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.38 E-value=1.1e-11 Score=125.39 Aligned_cols=204 Identities=15% Similarity=0.103 Sum_probs=106.4
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCC-C
Q 007193 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIEP-N 161 (613)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~ 161 (613)
....+......+...|++++|...|+.+.+.+ +.+ ..++..+...+...|++++|...|++.... +-.| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 34455556666777777777777777777653 223 245666777777777777777777765432 1111 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHccCC--------------------HHHH
Q 007193 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV-KPD----RVVFNALITACGQSGA--------------------VDRA 216 (613)
Q Consensus 162 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~a 216 (613)
..++..+...|...|++++|...+++...... .++ ..++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 44566666777777777777777766653200 011 2345555566666666 5555
Q ss_pred HHHHHHHhhCCCCC--C-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHhcCCHHHH
Q 007193 217 FDVLAEMNAEVHPV--D-PDHITIGALMKACANAGQVDRAREVYKMIHKYNI-KGT----PEVYTIAINCCSQTGDWEFA 288 (613)
Q Consensus 217 ~~~~~~m~~~~~~~--~-~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~a 288 (613)
.+.+.+........ . ....++..+...|...|++++|...+++..+... .++ ..++..+...|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 55555433210000 0 0122344444555555555555555544432210 000 12344444444455555555
Q ss_pred HHHHHHH
Q 007193 289 CSVYDDM 295 (613)
Q Consensus 289 ~~~~~~m 295 (613)
...+++.
T Consensus 247 ~~~~~~a 253 (406)
T 3sf4_A 247 SEYYKKT 253 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444443
No 59
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.38 E-value=1.1e-10 Score=103.86 Aligned_cols=165 Identities=16% Similarity=0.050 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007193 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (613)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 313 (613)
..+|..+...|.+.|++++|.+.|++..+.+ +.+..+|..+...|.+.|++++|...+......... +...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence 4455555555555555555555555555544 344555555555555555555555555555544322 34444444455
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHH
Q 007193 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393 (613)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 393 (613)
+...++++.|...+....+.. +.+...+..+...|.+.|++++|.+.|++..+.. +.+..+|..+...|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 555555555555555554443 3344455555555555555555555555554432 23344555555555555555555
Q ss_pred HHHHHHHHh
Q 007193 394 MEVLSDMKS 402 (613)
Q Consensus 394 ~~l~~~m~~ 402 (613)
++.|++..+
T Consensus 161 ~~~~~~al~ 169 (184)
T 3vtx_A 161 VKYFKKALE 169 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555544
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.36 E-value=1.9e-11 Score=123.76 Aligned_cols=281 Identities=15% Similarity=0.027 Sum_probs=158.0
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC
Q 007193 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN----VHTYGALIDGCAKAGQVAKAFGAYGIMRSK----NVKP 195 (613)
Q Consensus 124 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p 195 (613)
.+....+......+...|++++|...|++..+.+ +.+ ..++..+...|...|++++|...|++.... +-.|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3445566667777778888888888888877653 222 246677777777888888888877765432 1111
Q ss_pred C-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC----HHHHHHHHHHHHhcCC--------------------h
Q 007193 196 D-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALMKACANAGQ--------------------V 250 (613)
Q Consensus 196 ~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~~~ll~~~~~~g~--------------------~ 250 (613)
. ..++..+...+...|++++|...+.+....... .++ ..++..+...|...|+ +
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~ 163 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE-LNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL 163 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-cccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHH
Confidence 1 335556666677777777777776665432100 011 2244455555555555 5
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007193 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP-DEVFLSALIDFAGHAGKVEAAFEILQE 329 (613)
Q Consensus 251 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~ 329 (613)
++|...+++..+.. ...+..| ...++..+...+...|++++|...+.+
T Consensus 164 ~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 212 (406)
T 3sf4_A 164 QAAVDFYEENLSLV-------------------------------TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ 212 (406)
T ss_dssp HHHHHHHHHHHHHH-------------------------------HHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------------------------------HhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55555544432210 0011000 122344444455555555555555554
Q ss_pred HHHC----CC-CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHcCCChhHHHHHHHH
Q 007193 330 AKNQ----GI-SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL-KPT----VSTMNALITALCDGDQLPKTMEVLSD 399 (613)
Q Consensus 330 ~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~l~~~ 399 (613)
..+. +. .....++..+...|...|++++|...+++..+... .++ ..++..+...|...|++++|.+.+++
T Consensus 213 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 292 (406)
T 3sf4_A 213 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 292 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 4332 10 00122555666666667777777666666543110 011 44666777777777888888777777
Q ss_pred HHhC----CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 400 MKSL----GLCP-NTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 400 m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
..+. +-.+ ...++..+...+...|++++|...+++..+
T Consensus 293 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 293 HLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6542 1111 144666777788888888888888887664
No 61
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.36 E-value=9.6e-10 Score=106.75 Aligned_cols=217 Identities=9% Similarity=0.098 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-------cCCh-------hHHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
Q 007193 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAK-------SGKV-------DAMFEVFHEMVN-AGIEPNVHTYGALIDGCA 173 (613)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-------~g~~-------~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~ 173 (613)
++|..+|+...+.. +.++..|..+...+.. .|++ ++|..+|++..+ .. +.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 56666776666543 4456666666665543 3554 666666666665 22 234456666666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHH-hcCCh
Q 007193 174 KAGQVAKAFGAYGIMRSKNVKPD-RV-VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA-NAGQV 250 (613)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~-~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~-~~g~~ 250 (613)
+.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|++..... +++...|........ ..|++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA---RTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST---TCCTHHHHHHHHHHHHTSCCH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHcCCH
Confidence 666666666666666653 332 22 56666666666666666666666665431 122233322222211 24566
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHH
Q 007193 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG-VIP--DEVFLSALIDFAGHAGKVEAAFEIL 327 (613)
Q Consensus 251 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p--~~~~~~~li~~~~~~g~~~~a~~~~ 327 (613)
++|..+|++..+.. +.+...|..++..+.+.|++++|..+|++..... ..| ....|..++....+.|+.+.|..++
T Consensus 186 ~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 186 SVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666555543 3345555555665666666666666666655542 222 2344555555555555555555555
Q ss_pred HHHHHC
Q 007193 328 QEAKNQ 333 (613)
Q Consensus 328 ~~~~~~ 333 (613)
+++.+.
T Consensus 265 ~~a~~~ 270 (308)
T 2ond_A 265 KRRFTA 270 (308)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 62
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.36 E-value=1.1e-09 Score=106.20 Aligned_cols=219 Identities=14% Similarity=0.092 Sum_probs=156.1
Q ss_pred HHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHH-------hcCCh-------HHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 007193 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACA-------NAGQV-------DRAREVYKMIHKYNIKGTPEVYTIAINCC 279 (613)
Q Consensus 214 ~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~-------~~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 279 (613)
++|..+|++.... .+.+...|..++..+. +.|++ ++|..+|++..+.-.+.+...|..++..+
T Consensus 33 ~~a~~~~~~al~~---~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLV---LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4566666666543 1334555555555544 34665 77888888877731144566788888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH-hcCCHHH
Q 007193 280 SQTGDWEFACSVYDDMTKKGVIPDEV-FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS-NAKNWQK 357 (613)
Q Consensus 280 ~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~ 357 (613)
.+.|++++|..+|++..+..+. +.. .|..+...+.+.|++++|..+|+...+.. +.+...|........ ..|+.++
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred HhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888775322 232 67777777888888888888888887764 334455544433322 3689999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 007193 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-LCP--NTITYSILLVACERKDDVEVGLMLLSQ 434 (613)
Q Consensus 358 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~ 434 (613)
|..+|++..+.. +.+...|..++..+.+.|++++|..+|++..... +.| ....|..++....+.|+.+.|..++++
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999887643 3467888889999999999999999999988853 455 456788888888889999999999998
Q ss_pred HHHc
Q 007193 435 AKED 438 (613)
Q Consensus 435 m~~~ 438 (613)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8874
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.35 E-value=2.5e-11 Score=123.31 Aligned_cols=277 Identities=15% Similarity=0.018 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHH
Q 007193 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAGQVAKAFGAYGIMRSK----NV-KPDRVV 199 (613)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~ 199 (613)
.+..+...+...|++++|.+.|++..+.+ +.+. .+|..+...|...|++++|...|++..+. +- +....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 33444555666666666666666666542 1122 34555666666666666666666655432 10 111223
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 007193 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279 (613)
Q Consensus 200 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 279 (613)
+..+...|...|++++|...+.+........ .+ .+....++..+...|
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~-------------------------------~~~~~~~~~~l~~~~ 176 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQL-GD-------------------------------RLSEGRALYNLGNVY 176 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TC-------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh-hc-------------------------------hHHHHHHHHHHHHHH
Confidence 4444444455555555555554443210000 00 011123445555555
Q ss_pred HhcCC-----------------HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--
Q 007193 280 SQTGD-----------------WEFACSVYDDMTKK----GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI-- 335 (613)
Q Consensus 280 ~~~g~-----------------~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-- 335 (613)
...|+ +++|++.+.+..+. +..+ ...++..+...+...|++++|...+.+..+...
T Consensus 177 ~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 55555 55555555554321 1111 123556666677777777777777776654310
Q ss_pred ---CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHcCCChhHHHHHHHHHHhC----
Q 007193 336 ---SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL-KP----TVSTMNALITALCDGDQLPKTMEVLSDMKSL---- 403 (613)
Q Consensus 336 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---- 403 (613)
.....++..+...|...|++++|...|++..+... .. ...++..+...|...|++++|.+.+++..+.
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 01123677788888888999988888887654210 01 1467778888899999999999999887652
Q ss_pred CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 007193 404 GLCP-NTITYSILLVACERKDDVEVGLMLLSQAKED 438 (613)
Q Consensus 404 g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (613)
+-.+ ...++..+...+...|++++|...+++..+.
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1111 1346778888999999999999999998863
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.35 E-value=1.8e-11 Score=124.35 Aligned_cols=236 Identities=13% Similarity=0.051 Sum_probs=145.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHHC----CC-CCCHHH
Q 007193 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC----KLYTTLITTCAKSGKVDAMFEVFHEMVNA----GI-EPNVHT 164 (613)
Q Consensus 94 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~~~~~~ 164 (613)
.+..+...+...|++++|...|+.+.+.+ +.+. .++..+...|...|++++|.+.|++..+. +- +....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 44456677889999999999999998874 3343 47888889999999999999999887643 11 224567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHccCC-----------------HHHHHHHHHH
Q 007193 165 YGALIDGCAKAGQVAKAFGAYGIMRSK----NV-KPDRVVFNALITACGQSGA-----------------VDRAFDVLAE 222 (613)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~-----------------~~~a~~~~~~ 222 (613)
+..+...|...|++++|...|++.... +- +....++..+...|...|+ +++|.+.+.+
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 888889999999999999999887643 11 1123466677777888888 7777777666
Q ss_pred HhhCCC--CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007193 223 MNAEVH--PV-DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK-GT----PEVYTIAINCCSQTGDWEFACSVYDD 294 (613)
Q Consensus 223 m~~~~~--~~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~ 294 (613)
...... +. .....++..+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 532100 00 011234555666666667777766666655432100 01 12455555566666666666666655
Q ss_pred HHHCCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 295 MTKKGVI-P----DEVFLSALIDFAGHAGKVEAAFEILQEA 330 (613)
Q Consensus 295 m~~~g~~-p----~~~~~~~li~~~~~~g~~~~a~~~~~~~ 330 (613)
....... . ...++..+...+...|++++|...+++.
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRH 329 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4432100 0 0233444444444455555555444443
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.35 E-value=1.7e-10 Score=102.65 Aligned_cols=172 Identities=16% Similarity=0.057 Sum_probs=151.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 007193 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (613)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 347 (613)
++.+|..+...|.+.|++++|++.|++..+..+. +...+..+...|.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 5678999999999999999999999999987654 77889999999999999999999999998875 556778888889
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHH
Q 007193 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427 (613)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 427 (613)
.+...++++.|...+.+..+.. +.+...+..+...|.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 9999999999999999988754 4568889999999999999999999999998852 3467889999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHH
Q 007193 428 GLMLLSQAKEDGVIPNLV 445 (613)
Q Consensus 428 a~~~~~~m~~~g~~p~~~ 445 (613)
|.+.|++.++ +.|+..
T Consensus 160 A~~~~~~al~--~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALE--KEEKKA 175 (184)
T ss_dssp HHHHHHHHHH--TTHHHH
T ss_pred HHHHHHHHHh--CCccCH
Confidence 9999999987 456543
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.34 E-value=3.5e-11 Score=118.08 Aligned_cols=62 Identities=8% Similarity=-0.084 Sum_probs=30.4
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 376 TMNALITALCDGDQLPKTMEVLSDMKSL----GLCP-NTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
++..+...|...|++++|...+++..+. +-.+ ...++..+...+...|++++|...+++..+
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3444455555555555555555544331 0000 123444555556666666666666665554
No 67
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.34 E-value=3e-08 Score=105.47 Aligned_cols=393 Identities=12% Similarity=0.052 Sum_probs=266.7
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCC---hHHHHHH
Q 007193 41 ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKD---SEGAFQV 114 (613)
Q Consensus 41 ~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~---~~~A~~~ 114 (613)
..+-+..|++-...+ |.+...+..++..+.+.+.++.|..+|+++. +.....|..-+..-.+.++ ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 344566778777777 7788888888888888888999999998764 5677889988988888888 9999999
Q ss_pred HHHHHHcC-CCCCHHHHHHHHHHHHHcCCh--------hHHHHHHHHHHH-CCC-CC-CHHHHHHHHHHHH---------
Q 007193 115 LRLVQEAG-LKADCKLYTTLITTCAKSGKV--------DAMFEVFHEMVN-AGI-EP-NVHTYGALIDGCA--------- 173 (613)
Q Consensus 115 ~~~m~~~g-~~~~~~~~~~li~~~~~~g~~--------~~a~~~~~~m~~-~g~-~~-~~~~~~~li~~~~--------- 173 (613)
|++..... .+|++..|..-+....+.++. +...++|+.... .|. .+ +...|...+....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 99998764 248898998888877666654 334578877553 465 45 3568888776543
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHH---HHHHHH----------ccCCHHHHHHHHHHHhhCCCCC----C-----
Q 007193 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNA---LITACG----------QSGAVDRAFDVLAEMNAEVHPV----D----- 231 (613)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~---li~~~~----------~~g~~~~a~~~~~~m~~~~~~~----~----- 231 (613)
..++++.+..+|++.+......-..+|.. +-.... ...+++.|...+.++.....++ +
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 34457889999999986422212234422 222110 0112334455554432110111 1
Q ss_pred ------C-----C---HHHHHHHHHHHHhcC-------ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH-
Q 007193 232 ------P-----D---HITIGALMKACANAG-------QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC- 289 (613)
Q Consensus 232 ------~-----~---~~~~~~ll~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~- 289 (613)
| + ...|...+..--..+ ..+.+..+|++..... +.....|-..+..+...|+.++|.
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 1 1 134444444322222 1234566788887763 667889999999888999999996
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------Cc------------CHHhHHHHHHH
Q 007193 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI---------SV------------GIISYSSLMGA 348 (613)
Q Consensus 290 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---------~~------------~~~~~~~li~~ 348 (613)
++|++..... +.+...|...+....+.|+++.|.++|+.+.+... .| ...+|...+..
T Consensus 365 ~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 9999988743 33666677788888899999999999999876410 12 23468888888
Q ss_pred HHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHcC-CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHH
Q 007193 349 CSNAKNWQKALELYEHMKSI-KLKPTVSTMNALITALCDG-DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426 (613)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 426 (613)
..+.|..+.|..+|.+..+. + ......|...+..-.+. ++.+.|.++|+...+. .+-+...+...+......|+.+
T Consensus 444 erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~ 521 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEES 521 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHH
Confidence 88899999999999999875 2 12334444333333344 4589999999998875 3446666778888888899999
Q ss_pred HHHHHHHHHHHcC
Q 007193 427 VGLMLLSQAKEDG 439 (613)
Q Consensus 427 ~a~~~~~~m~~~g 439 (613)
.|+.+|++.++..
T Consensus 522 ~AR~lferal~~~ 534 (679)
T 4e6h_A 522 QVKSLFESSIDKI 534 (679)
T ss_dssp HHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998753
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.33 E-value=3.8e-11 Score=117.79 Aligned_cols=201 Identities=15% Similarity=0.095 Sum_probs=111.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CC-CCCHHH
Q 007193 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GI-EPNVHT 164 (613)
Q Consensus 94 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~~~~~~ 164 (613)
.+......+...|++++|...|+.+.+.. +.+ ...+..+...+...|++++|.+.+++.... +- +....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34444566777888888888888887764 223 356777777888888888888887775432 11 112456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHccCC--------------------HHHHHHH
Q 007193 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNV-KPD----RVVFNALITACGQSGA--------------------VDRAFDV 219 (613)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~a~~~ 219 (613)
+..+...|...|++++|...+++..+... .++ ..++..+...+...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 67777778888888888888777654210 111 2255566666666666 6666666
Q ss_pred HHHHhhCCC--C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CC----CHHHHHHHHHHHHhcCCHHHHHHH
Q 007193 220 LAEMNAEVH--P-VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI-KG----TPEVYTIAINCCSQTGDWEFACSV 291 (613)
Q Consensus 220 ~~~m~~~~~--~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~----~~~~~~~li~~~~~~g~~~~a~~~ 291 (613)
+.+...... + ......++..+...+...|++++|...+++..+... .+ ...++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 555432100 0 000122344445555555555555555554432210 00 012344444445555555555555
Q ss_pred HHHH
Q 007193 292 YDDM 295 (613)
Q Consensus 292 ~~~m 295 (613)
+++.
T Consensus 246 ~~~a 249 (338)
T 3ro2_A 246 YKKT 249 (338)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.32 E-value=3.1e-10 Score=114.09 Aligned_cols=231 Identities=9% Similarity=-0.058 Sum_probs=144.1
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC------CCCHHHHHH
Q 007193 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDP---DHITIGALMKACANAGQVDRAREVYKMIHKYNI------KGTPEVYTI 274 (613)
Q Consensus 204 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~~ 274 (613)
...+...|++++|...|.+........+. ...++..+...|...|+++.|...+++..+... +....+++.
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 34455666666666666666542111111 124556666667777777777777766544210 011345677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CcCHHhHHH
Q 007193 275 AINCCSQTGDWEFACSVYDDMTKKGVI-PD----EVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GI-SVGIISYSS 344 (613)
Q Consensus 275 li~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~ 344 (613)
+...|...|++++|.+.|.+..+.... ++ ..++..+...|...|++++|...+.+..+. +. +....++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 777777778888777777776542110 11 135667777788888888888888777652 22 334566777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHcCCC---hhHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 007193 345 LMGACSNAKNWQKALELYEHMKSI----KLKPTVSTMNALITALCDGDQ---LPKTMEVLSDMKSLGLCPN-TITYSILL 416 (613)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~-~~t~~~ll 416 (613)
+...|.+.|++++|...+++..+. +-+.....+..+...|...|+ .++|+.++++. +..|+ ...+..+.
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la 346 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHH
Confidence 888888888888888888776542 111112335567777778887 66777777655 22333 34566777
Q ss_pred HHHhhcCCHHHHHHHHHHHHH
Q 007193 417 VACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 417 ~a~~~~g~~~~a~~~~~~m~~ 437 (613)
..|...|++++|...+++..+
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 888888999998888887764
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.32 E-value=1.7e-10 Score=115.90 Aligned_cols=296 Identities=9% Similarity=-0.003 Sum_probs=198.8
Q ss_pred HHcCCChHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHH--HHcCChhHHH-----------HHHHHHHHCCCCCCHHH
Q 007193 102 CASSKDSEGAFQVLRLVQEA--GLKAD--CKLYTTLITTC--AKSGKVDAMF-----------EVFHEMVNAGIEPNVHT 164 (613)
Q Consensus 102 ~~~~~~~~~A~~~~~~m~~~--g~~~~--~~~~~~li~~~--~~~g~~~~a~-----------~~~~~m~~~g~~~~~~~ 164 (613)
+.+.+++++|..+++++.+. .+..| ...|-.++..- .-.+.++.+. +.++.+... +.+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~--~~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK--QARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH--THHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc--CCCchh
Confidence 34567788888877777653 22233 33333333221 1223333333 566665432 111111
Q ss_pred ------HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC--
Q 007193 165 ------YGALIDGCAKAGQVAKAFGAYGIMRSK----NVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD-- 231 (613)
Q Consensus 165 ------~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-- 231 (613)
+......+...|++++|...|++.... +-.+ ...++..+...|...|++++|...+.+.........
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 222555677889999999999988753 1111 235677888889999999999998888764211111
Q ss_pred --CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CC
Q 007193 232 --PDHITIGALMKACANAGQVDRAREVYKMIHKYNIK-GT----PEVYTIAINCCSQTGDWEFACSVYDDMTK-----KG 299 (613)
Q Consensus 232 --~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g 299 (613)
....+++.+...|...|++++|...|++..+.... ++ ..++..+...|...|++++|.+.|++..+ ..
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 11356778888999999999999999877653111 11 24788899999999999999999998876 32
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCC
Q 007193 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GISVGIISYSSLMGACSNAKN---WQKALELYEHMKSIKLKP 372 (613)
Q Consensus 300 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~ 372 (613)
......++..+...+.+.|++++|...+++..+. +-+.....+..+...|...|+ +++|..++++.. ..|
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~---~~~ 336 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM---LYA 336 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT---CHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc---CHH
Confidence 1224567888889999999999999999887654 212223345677888888898 777888777663 223
Q ss_pred C-HHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007193 373 T-VSTMNALITALCDGDQLPKTMEVLSDMKS 402 (613)
Q Consensus 373 ~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (613)
+ ...+..+...|.+.|++++|.+.+++..+
T Consensus 337 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 337 DLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3 34677888999999999999999998765
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.30 E-value=1.2e-10 Score=120.43 Aligned_cols=199 Identities=11% Similarity=-0.061 Sum_probs=113.0
Q ss_pred CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHH
Q 007193 161 NVHTYGALIDGCAKAGQV-AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 239 (613)
Q Consensus 161 ~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ 239 (613)
+...+..+...|...|++ ++|+..|++..+.. +-+...|..+...|...|++++|.+.|++.... .|+...+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~ 175 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH----CKNKVSLQN 175 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT----CCCHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCHHHHHH
Confidence 344444444444445555 55555554444431 222444445555555555555555555554432 334444444
Q ss_pred HHHHHHhc---------CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCC-
Q 007193 240 LMKACANA---------GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT--------GDWEFACSVYDDMTKKGVI- 301 (613)
Q Consensus 240 ll~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~- 301 (613)
+...|... |++++|...|++..+.. +.+...|..+...|... |++++|++.|++..+....
T Consensus 176 lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 254 (474)
T 4abn_A 176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA 254 (474)
T ss_dssp HHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc
Confidence 55555555 56666666666655554 44455666666666665 6667777777666664320
Q ss_pred -CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 302 -PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (613)
Q Consensus 302 -p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (613)
-+...|..+..+|...|++++|...|++..+.. +.+...+..+...+...|++++|.+.+.++.
T Consensus 255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~~ 319 (474)
T 4abn_A 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGKTK 319 (474)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 255666667777777777777777777766654 3455666777777777777777777666553
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.29 E-value=1.3e-10 Score=120.09 Aligned_cols=216 Identities=10% Similarity=-0.076 Sum_probs=182.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 007193 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV-DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255 (613)
Q Consensus 177 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 255 (613)
.+++++..+++..... +.+...+..+...+...|++ ++|.+.|++..... +.+...+..+...|.+.|++++|..
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE---PELVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3567777787776542 34778888899999999999 99999999987642 3457789999999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------C
Q 007193 256 VYKMIHKYNIKGTPEVYTIAINCCSQT---------GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA--------G 318 (613)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~--------g 318 (613)
.|++..+.+ |+...+..+...|... |++++|++.|++..+.... +...|..+..+|... |
T Consensus 159 ~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 159 CFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccc
Confidence 999998875 5578899999999999 9999999999999887544 678889999999888 9
Q ss_pred CHHHHHHHHHHHHHCCCC---cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 007193 319 KVEAAFEILQEAKNQGIS---VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395 (613)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 395 (613)
++++|...|++..+.. + .+...+..+...|...|++++|...|++..+.. +.+...+..+...+...|++++|++
T Consensus 236 ~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 236 ISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998864 3 578899999999999999999999999988754 3457788889999999999999998
Q ss_pred HHHHHH
Q 007193 396 VLSDMK 401 (613)
Q Consensus 396 l~~~m~ 401 (613)
.+.++.
T Consensus 314 ~~~~~~ 319 (474)
T 4abn_A 314 SKGKTK 319 (474)
T ss_dssp HTTTCC
T ss_pred Hhcccc
Confidence 776653
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.28 E-value=1.6e-11 Score=119.19 Aligned_cols=176 Identities=14% Similarity=0.114 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC------CC
Q 007193 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEA-------GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA------GI 158 (613)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~ 158 (613)
..++..+...+...|++++|...++.+.+. ..+....++..+...|...|++++|.+.|++.... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 345555566666666666666666665542 11223344555555555556666666555555432 10
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHH
Q 007193 159 -EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237 (613)
Q Consensus 159 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 237 (613)
+....++..+...|...|++++|...|++..+.. ..... ...+....++
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----------------------------~~~~~--~~~~~~~~~~ 156 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR----------------------------EKVLG--KDHPDVAKQL 156 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH----------------------------HHHHC--TTCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH----------------------------HHhcC--CCChHHHHHH
Confidence 1123344444444555555555555554443210 00000 0001122334
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhc------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007193 238 GALMKACANAGQVDRAREVYKMIHKY------N-IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (613)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 297 (613)
..+...+...|++++|...|+++.+. + .+....++..+...|...|++++|.+.++++.+
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555555555555555555554432 1 011233455566666666666666666665543
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.22 E-value=3.2e-10 Score=109.98 Aligned_cols=241 Identities=12% Similarity=0.036 Sum_probs=170.1
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC-----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc------C
Q 007193 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVH-----PVDPDHITIGALMKACANAGQVDRAREVYKMIHKY------N 264 (613)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-----~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------~ 264 (613)
+..++..+...+...|++++|..+++++..... ..+....++..+...|...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 356788888999999999999999999876200 11233566788889999999999999999988664 1
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 007193 265 -IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK------GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ--- 333 (613)
Q Consensus 265 -~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--- 333 (613)
.+....++..+...|...|++++|.+.|++..+. +..| ....+..+...+...|++++|...++.+.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1223567888999999999999999999998764 2222 3456778888999999999999999998764
Q ss_pred ---C-CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCC-------HHHHHHHHHHHHcCCChhHHHH
Q 007193 334 ---G-ISVGIISYSSLMGACSNAKNWQKALELYEHMKSI-------KLKPT-------VSTMNALITALCDGDQLPKTME 395 (613)
Q Consensus 334 ---~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~~-------~~~~~~li~~~~~~g~~~~A~~ 395 (613)
+ .+....++..+...|...|++++|...|+++.+. ...+. ...+..+...+...+.+.+|..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 2 2234557888999999999999999999988752 11111 1223333444556677777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 396 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 396 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
.+....... +.+..++..+..+|.+.|++++|..++++..+
T Consensus 266 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777766531 23456788889999999999999999998875
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.20 E-value=9.8e-09 Score=102.57 Aligned_cols=266 Identities=11% Similarity=-0.045 Sum_probs=150.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC----HHHHHHHHH
Q 007193 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRV----VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALMK 242 (613)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~~~ll~ 242 (613)
.+...|++++|...+++.....-..+.. +++.+...+...|++++|.+.+.+....... .++ ..++..+..
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ-HDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHH
Confidence 3444555555555555554432111111 3334444555556666666665554331100 111 122344555
Q ss_pred HHHhcCChHHHHHHHHHHHhc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--C--CHHHHHHHH
Q 007193 243 ACANAGQVDRAREVYKMIHKY----NIK--G-TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI--P--DEVFLSALI 311 (613)
Q Consensus 243 ~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p--~~~~~~~li 311 (613)
.+...|++++|...+++.... +.. | ....+..+...+...|++++|...+++....... + ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 666677777777766655432 111 1 1234555666677777777777777776543211 1 234566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcC--HHhHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHH
Q 007193 312 DFAGHAGKVEAAFEILQEAKNQGISVG--IISYS----SLMGACSNAKNWQKALELYEHMKSIKLKP---TVSTMNALIT 382 (613)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~ 382 (613)
..+...|++++|...+++.......++ ..... ..+..+...|++++|...+++.......+ ....+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 777777888888877777654311111 11111 23344667888888888887776533211 1234566777
Q ss_pred HHHcCCChhHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 383 ALCDGDQLPKTMEVLSDMKSL----GLCPNT-ITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 383 ~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
.+...|++++|.+.+++.... |..++. ..+..+..++...|+.++|...+++...
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 888888888888888876542 222222 2555666778888999999988887764
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.20 E-value=9e-09 Score=103.08 Aligned_cols=229 Identities=11% Similarity=-0.060 Sum_probs=159.7
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CC----CCHHHHH
Q 007193 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALMKACANAGQVDRAREVYKMIHKYN--IK----GTPEVYT 273 (613)
Q Consensus 204 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--~~----~~~~~~~ 273 (613)
...+...|++++|...|.+........ ++ ..++..+...|...|+++.|...+++..+.. .. ....+++
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFV-SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhC-CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 344567788888888888776432111 22 3456677778888888888888887765431 11 1245677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCcCHHhHH
Q 007193 274 IAINCCSQTGDWEFACSVYDDMTKK----GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKN-----QGISVGIISYS 343 (613)
Q Consensus 274 ~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~ 343 (613)
.+...|...|++++|.+.|.+..+. +..+ ...++..+...|...|++++|...+.+..+ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 8888888899999998888876642 1111 124677778888889999999999988876 43 33467788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHcCCC---hhHHHHHHHHHHhCCCCCC-HHHHHHH
Q 007193 344 SLMGACSNAKNWQKALELYEHMKSIK----LKPTVSTMNALITALCDGDQ---LPKTMEVLSDMKSLGLCPN-TITYSIL 415 (613)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m~~~~----~~~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~-~~t~~~l 415 (613)
.+...|.+.|++++|...+++..+.. -+.....+..+...|...++ ..+|+..+++. +..|+ ...+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHH
Confidence 88899999999999999998876531 11223456666667777787 77777777652 22333 3456677
Q ss_pred HHHHhhcCCHHHHHHHHHHHHH
Q 007193 416 LVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 416 l~a~~~~g~~~~a~~~~~~m~~ 437 (613)
...|...|++++|...+++..+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 7889999999999999988764
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.18 E-value=2.5e-09 Score=94.60 Aligned_cols=21 Identities=14% Similarity=0.137 Sum_probs=7.9
Q ss_pred HHHHHHhhcCCHHHHHHHHHH
Q 007193 414 ILLVACERKDDVEVGLMLLSQ 434 (613)
Q Consensus 414 ~ll~a~~~~g~~~~a~~~~~~ 434 (613)
.+...+...|++++|...+++
T Consensus 149 ~la~~~~~~~~~~~A~~~~~~ 169 (186)
T 3as5_A 149 AIAFSYEQMGRHEEALPHFKK 169 (186)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHH
Confidence 333333333333333333333
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.17 E-value=1.4e-08 Score=101.37 Aligned_cols=267 Identities=12% Similarity=0.042 Sum_probs=140.0
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHH
Q 007193 99 MSVCASSKDSEGAFQVLRLVQEAGLKADCK----LYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPN----VHTYGALI 169 (613)
Q Consensus 99 i~~~~~~~~~~~A~~~~~~m~~~g~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~~~~~li 169 (613)
...+...|++++|...++.........+.. +++.+...+...|++++|.+.+++.....- .++ ..++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344566778888888887776653222222 455566677777888888877777653210 111 12345566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC----CCC--CC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCC--CHHHHHHH
Q 007193 170 DGCAKAGQVAKAFGAYGIMRSK----NVK--PD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP--DHITIGAL 240 (613)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~----g~~--p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~~~l 240 (613)
..+...|++++|...+++.... +.. |. ...+..+...+...|++++|...+.+.........+ ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 6777778888887777776542 211 22 234455666677777777777777766542111111 12345556
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCC-CHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 007193 241 MKACANAGQVDRAREVYKMIHKYNIKG-TPEVYT-----IAINCCSQTGDWEFACSVYDDMTKKGVIPD---EVFLSALI 311 (613)
Q Consensus 241 l~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~-----~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li 311 (613)
...+...|++++|...+++.....-.+ ....+. ..+..+...|++++|...+.+.......+. ...+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 666667777777777776654431111 111111 122335566666666666666544322111 12334444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC----CCCcCH-HhHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 312 DFAGHAGKVEAAFEILQEAKNQ----GISVGI-ISYSSLMGACSNAKNWQKALELYEHM 365 (613)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m 365 (613)
..+...|++++|...++..... +..++. ..+..+...+...|+.++|...+++.
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 319 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 319 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 5555555655555555554322 111111 13333444444555555555554444
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.16 E-value=5.3e-09 Score=92.47 Aligned_cols=59 Identities=19% Similarity=0.132 Sum_probs=22.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (613)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 296 (613)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.
T Consensus 45 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 103 (186)
T 3as5_A 45 ALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKYDLAVPLLIKVA 103 (186)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3333333334444444444443333332 2223333333333444444444444443333
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.16 E-value=7.3e-09 Score=103.75 Aligned_cols=231 Identities=10% Similarity=0.002 Sum_probs=163.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC---C-CHHHHH
Q 007193 168 LIDGCAKAGQVAKAFGAYGIMRSKNV-KPD----RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD---P-DHITIG 238 (613)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~---~-~~~~~~ 238 (613)
....+...|++++|+..|++...... .++ ..++..+...|...|+++.|...+.+......... + ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34456678889999998888865310 122 34667777888888999888888877654211111 1 244677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 007193 239 ALMKACANAGQVDRAREVYKMIHKY----NIK-GTPEVYTIAINCCSQTGDWEFACSVYDDMTK-----KGVIPDEVFLS 308 (613)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~ 308 (613)
.+...|...|++++|.+.|++..+. +-+ ....++..+...|...|++++|.+.|++... .... ...++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHH
Confidence 7888889999999999988877553 111 1134677888889999999999999988876 4333 366788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC----CCcCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 007193 309 ALIDFAGHAGKVEAAFEILQEAKNQG----ISVGIISYSSLMGACSNAKN---WQKALELYEHMKSIKLKPT-VSTMNAL 380 (613)
Q Consensus 309 ~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~-~~~~~~l 380 (613)
.+...+.+.|++++|...+++..+.. -+.....+..+...|...|+ +.+|...++... ..|+ ...+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN---LHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC---ChhHHHHHHHHH
Confidence 88889999999999999999887642 12223455666667777787 777777777632 1222 3456678
Q ss_pred HHHHHcCCChhHHHHHHHHHHh
Q 007193 381 ITALCDGDQLPKTMEVLSDMKS 402 (613)
Q Consensus 381 i~~~~~~g~~~~A~~l~~~m~~ 402 (613)
...|.+.|++++|.+.|++..+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8889999999999999988764
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.12 E-value=3.8e-09 Score=113.68 Aligned_cols=165 Identities=13% Similarity=0.058 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007193 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (613)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 313 (613)
..+++.|...|.+.|++++|.+.|++..+.+ +.+..+|+.+...|.+.|++++|++.|++..+.... +...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4566777777777777777777777776664 445667777777777777777777777777665433 45667777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHH
Q 007193 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393 (613)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 393 (613)
+.+.|++++|.+.|++..+.. +-+...++.+...|.+.|++++|.+.|++..+.. +-+...|..+...|...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence 777777777777777776654 4456677777777777777777777777776643 23466777777777777777777
Q ss_pred HHHHHHHHh
Q 007193 394 MEVLSDMKS 402 (613)
Q Consensus 394 ~~l~~~m~~ 402 (613)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776543
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.08 E-value=1.6e-08 Score=93.21 Aligned_cols=191 Identities=16% Similarity=0.077 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007193 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (613)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 314 (613)
..+......+...|++++|...|++..+...+++...+..+..++...|++++|++.|++..+..+. +...+..+...+
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 86 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHHHH
Confidence 4444444555555555555555555554442244444444555555555555555555555544322 334455555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCH-------HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHH
Q 007193 315 GHAGKVEAAFEILQEAKNQGISVGI-------ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT---VSTMNALITAL 384 (613)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~ 384 (613)
...|++++|...++...+.. +.+. ..|..+...+...|++++|...|++..+. .|+ ...|..+...|
T Consensus 87 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHH
Confidence 55555555555555555442 2222 23455555556666666666666666553 233 34445555554
Q ss_pred HcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 385 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
... +...++++...+ ..+...|.... ....+.+++|...+++..+
T Consensus 164 ~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 164 YNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh
Confidence 332 223334443332 22333333322 2234456666666666665
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.07 E-value=3e-08 Score=91.37 Aligned_cols=197 Identities=9% Similarity=-0.003 Sum_probs=140.3
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007193 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (613)
Q Consensus 90 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 169 (613)
.|+..|......+...|++++|...|+...+...+++...+..+..++...|++++|.+.|++..+.. +.+..+|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 45677777788888888999999988888877633677777778888888899999999888888764 33567788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC---HHHHHH
Q 007193 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDR-------VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD---HITIGA 239 (613)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---~~~~~~ 239 (613)
..|...|++++|+..|++..+.. +.+. ..|..+...+...|++++|.+.|++.... .|+ ...+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~~ 158 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV----TSKKWKTDALYS 158 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS----SCHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc----CCCcccHHHHHH
Confidence 88888899999999888887752 2234 44666777788888999999999888753 444 455666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007193 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300 (613)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 300 (613)
+...|...| ...++.+...+ ..+...|.... ....+.+++|+..|++..+..+
T Consensus 159 l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 159 LGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp HHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCC
Confidence 666665443 34455554443 23344444333 2344667889988888887643
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.06 E-value=7.7e-09 Score=111.29 Aligned_cols=166 Identities=13% Similarity=0.065 Sum_probs=123.4
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007193 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (613)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 170 (613)
+..+|+.+...+.+.|++++|+..|++..+.. +-+..+|..+..+|.+.|++++|++.|++..+.. +-+..+|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45677778888888888888888888877764 4457778888888888888888888888877663 335677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCCh
Q 007193 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250 (613)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~ 250 (613)
.|.+.|++++|++.|++..+.. +-+...|+.+..+|.+.|++++|.+.|++..+.. +.+...+..+...|...|++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~---P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK---PDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHhhhhhHHHhcccH
Confidence 8888888888888888877652 3346677778888888888888888888776531 23466777778888888888
Q ss_pred HHHHHHHHHHHh
Q 007193 251 DRAREVYKMIHK 262 (613)
Q Consensus 251 ~~A~~~~~~~~~ 262 (613)
++|.+.++++.+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888777766544
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.01 E-value=4.6e-09 Score=100.00 Aligned_cols=158 Identities=11% Similarity=0.075 Sum_probs=76.7
Q ss_pred HcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHH
Q 007193 139 KSGKVDAMFEVFHEMVNA-------GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK------NVKP-DRVVFNALI 204 (613)
Q Consensus 139 ~~g~~~~a~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~li 204 (613)
..|++++|...|++..+. ..+....++..+...|...|++++|...|++.... +-.| ...++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 455666666666554431 11223455666666677777777777777666542 1112 233455555
Q ss_pred HHHHccCCHHHHHHHHHHHhhCC-----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc------C-CCCCHHHH
Q 007193 205 TACGQSGAVDRAFDVLAEMNAEV-----HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY------N-IKGTPEVY 272 (613)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~m~~~~-----~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~ 272 (613)
..|...|++++|.+.+.+..... ...+....++..+...|...|++++|...|++..+. . .+....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 66666666666666666554310 000112334444445555555555555555544332 0 01112334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 273 TIAINCCSQTGDWEFACSVYDDMT 296 (613)
Q Consensus 273 ~~li~~~~~~g~~~~a~~~~~~m~ 296 (613)
..+...|...|++++|...+++..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444444444444443
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.99 E-value=3.1e-09 Score=101.21 Aligned_cols=229 Identities=12% Similarity=0.015 Sum_probs=153.5
Q ss_pred ccCCHHHHHHHHHHHhhCC-----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc------CC-CCCHHHHHHHH
Q 007193 209 QSGAVDRAFDVLAEMNAEV-----HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY------NI-KGTPEVYTIAI 276 (613)
Q Consensus 209 ~~g~~~~a~~~~~~m~~~~-----~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~li 276 (613)
..|++++|...+++..... ...+....++..+...|...|++++|...++++.+. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 4455555555555543310 011223567888889999999999999999988754 21 22356788999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC-----CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-CCcCHHhH
Q 007193 277 NCCSQTGDWEFACSVYDDMTKK-----GV-IP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ------G-ISVGIISY 342 (613)
Q Consensus 277 ~~~~~~g~~~~a~~~~~~m~~~-----g~-~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~ 342 (613)
..|...|++++|.+.|.+.... +. .| ...++..+...|...|++++|...+.+..+. + .+....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999998764 11 12 3567888888999999999999999998765 1 22345678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHH--h-CC-CCC-CH
Q 007193 343 SSLMGACSNAKNWQKALELYEHMKSI-------KLKP-TVSTMNALITALCDGDQLPKTMEVLSDMK--S-LG-LCP-NT 409 (613)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~--~-~g-~~p-~~ 409 (613)
..+...|.+.|++++|...|++..+. ...+ ....|..+...+...+....+..+..... + .+ ..| ..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 88999999999999999999988752 1112 22344444444444444333332221111 1 11 112 34
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 410 ITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 410 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
.++..+...+...|++++|..++++..+
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5677888999999999999999998875
No 87
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.92 E-value=6.4e-08 Score=80.18 Aligned_cols=127 Identities=15% Similarity=0.139 Sum_probs=54.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHh
Q 007193 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (613)
Q Consensus 272 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 351 (613)
|..+...+...|++++|..+++++.+.+.. +...+..+...+...|++++|...+..+.+.. +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 334444444444444444444444433221 33334444444444444444444444444332 2233344444444444
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 007193 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (613)
Q Consensus 352 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 401 (613)
.|++++|.+.++++.+.. +.+...+..+...+.+.|++++|.+.++++.
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 444444444444443322 1233444444444444444444444444443
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.92 E-value=4.6e-08 Score=93.94 Aligned_cols=131 Identities=10% Similarity=-0.046 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCC---CC--CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCC-C----H
Q 007193 236 TIGALMKACANAGQVDRAREVYKMIHKYNI---KG--TPEVYTIAINCCSQT-GDWEFACSVYDDMTKKGVIP-D----E 304 (613)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~p-~----~ 304 (613)
+++.+...|.+.|++++|...|++..+... .+ ...+++.+...|... |++++|+..|++..+..... + .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 344444444445555555444444332110 00 012344555555553 55555555555544321000 0 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH------HhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI------ISYSSLMGACSNAKNWQKALELYEHMK 366 (613)
Q Consensus 305 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (613)
.++..+...+.+.|++++|...|+...+....... ..+..+..++...|++++|...|++..
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 23444444555555555555555555443211111 023444444445555555555555444
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.90 E-value=8.3e-08 Score=79.47 Aligned_cols=127 Identities=15% Similarity=0.150 Sum_probs=65.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007193 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (613)
Q Consensus 95 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (613)
|..+...+...|++++|..+++.+.+.+ +.+...+..+...+...|++++|.+.|+++...+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 4444555555555555555555555443 3344455555555555555555555555555432 2334445555555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 007193 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224 (613)
Q Consensus 175 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 224 (613)
.|++++|...++++.... +.+..++..+...+...|++++|.+.+.++.
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 555555555555554432 2234444445555555555555555555443
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.90 E-value=1.1e-07 Score=89.81 Aligned_cols=179 Identities=13% Similarity=0.076 Sum_probs=85.2
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (613)
Q Consensus 111 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (613)
|...|++..+.+ +++..++..+..++...|++++|++++.+.+..|- .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444455444433 34444444555555666666666666655544331 1244455555556666666666666666665
Q ss_pred hCCCCC-----CHHHHHHHHHHHH--ccC--CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007193 190 SKNVKP-----DRVVFNALITACG--QSG--AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260 (613)
Q Consensus 190 ~~g~~p-----~~~~~~~li~~~~--~~g--~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 260 (613)
+. .| +..+...|..++. ..| +..+|..+|+++... .|+..+...++.++.+.|++++|.+.++.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~----~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT----FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT----SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh----CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 43 34 1333333443322 122 555566666665432 233222233333555556666666555544
Q ss_pred HhcC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 261 HKYN---------IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 261 ~~~~---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (613)
.+.. -+.++.+...+|......|+ +|.+++.++.+.
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 3320 02234444334333333444 455555555554
No 91
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.88 E-value=1.4e-06 Score=89.83 Aligned_cols=102 Identities=11% Similarity=0.132 Sum_probs=57.2
Q ss_pred cC-CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHcCCC-hHHHHH
Q 007193 38 QG-RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMSVCASSKD-SEGAFQ 113 (613)
Q Consensus 38 ~g-~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~-~~~A~~ 113 (613)
.| +++.|+.+|+.+...- |. ++++.+..+|++.. .|++..|...++-..+.+. .+....
T Consensus 7 ~~~~i~~aR~vyer~l~~~--P~---------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLY--MS---------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp -----CCHHHHHHHHHHHH--HT---------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHH
T ss_pred cCcchHHHHHHHHHHHHHC--CC---------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHH
Confidence 45 3666677776665532 21 44667777776643 3577777776666555442 344566
Q ss_pred HHHHHHHc-CC-CCCHHHHHHHHHHHH----HcCChhHHHHHHHHHHHC
Q 007193 114 VLRLVQEA-GL-KADCKLYTTLITTCA----KSGKVDAMFEVFHEMVNA 156 (613)
Q Consensus 114 ~~~~m~~~-g~-~~~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~ 156 (613)
+|+..... |. +.+...|...+..+. ..++++.+.++|+..+..
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~ 118 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT 118 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC
Confidence 66666543 32 335666766666543 235667777788777763
No 92
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.85 E-value=6.5e-08 Score=92.87 Aligned_cols=207 Identities=10% Similarity=0.049 Sum_probs=142.1
Q ss_pred CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcCCHH
Q 007193 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY----NIKG-TPEVYTIAINCCSQTGDWE 286 (613)
Q Consensus 212 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~ 286 (613)
++++|...|.+. ...|...|++++|...|.+..+. +-++ ...+|+.+...|.+.|+++
T Consensus 32 ~~~~A~~~~~~a-----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 94 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSV 94 (292)
T ss_dssp HHHHHHHHHHHH-----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 477787777765 33577889999999998877553 2111 1457888999999999999
Q ss_pred HHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCc-C----HHhHHHHHHHHHhcCCH
Q 007193 287 FACSVYDDMTKKGVI-PD----EVFLSALIDFAGHA-GKVEAAFEILQEAKNQGISV-G----IISYSSLMGACSNAKNW 355 (613)
Q Consensus 287 ~a~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~ 355 (613)
+|+..+++..+.... .+ ..++..+...|... |++++|...|++..+..... + ..+++.+...|.+.|++
T Consensus 95 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 174 (292)
T 1qqe_A 95 NAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY 174 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCH
Confidence 999999887653110 01 34677888888885 99999999888876542100 1 34677888888899999
Q ss_pred HHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHH------HHHHHHHHHh--h
Q 007193 356 QKALELYEHMKSIKLKPTV------STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI------TYSILLVACE--R 421 (613)
Q Consensus 356 ~~A~~~~~~m~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~------t~~~ll~a~~--~ 421 (613)
++|...|++..+....... ..|..+..++...|++++|...|++..+ +.|+.. .+..++.++. .
T Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~ 252 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGD 252 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCC
Confidence 9999999988775422221 1567777788888999999999888765 344321 2444555554 4
Q ss_pred cCCHHHHHHHHHHHHH
Q 007193 422 KDDVEVGLMLLSQAKE 437 (613)
Q Consensus 422 ~g~~~~a~~~~~~m~~ 437 (613)
.+++++|...|+++.+
T Consensus 253 ~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 253 SEQLSEHCKEFDNFMR 268 (292)
T ss_dssp TTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHhccCCc
Confidence 5667788777766543
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.85 E-value=1.5e-07 Score=88.65 Aligned_cols=99 Identities=11% Similarity=0.023 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC-HHHH
Q 007193 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN---VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV-KPD-RVVF 200 (613)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~~~ 200 (613)
+...+-.+...+.+.|++++|.+.|+++.+.. +.+ ...+..+...|.+.|++++|+..|++..+... .|. ...+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 34455555555666666666666666665542 112 44555566666666666666666666655411 111 2344
Q ss_pred HHHHHHHHc--------cCCHHHHHHHHHHHhh
Q 007193 201 NALITACGQ--------SGAVDRAFDVLAEMNA 225 (613)
Q Consensus 201 ~~li~~~~~--------~g~~~~a~~~~~~m~~ 225 (613)
..+..++.. .|++++|...|+++..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 125 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFID 125 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHH
Confidence 445555555 5666666666666554
No 94
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.85 E-value=1.9e-06 Score=81.37 Aligned_cols=164 Identities=16% Similarity=0.129 Sum_probs=76.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----CHHH
Q 007193 233 DHITIGALMKACANAGQVDRAREVYKMIHKYNI-KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP-----DEVF 306 (613)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-----~~~~ 306 (613)
+..++..+..++...|++++|++++.+....+- ..+...+..++..+.+.|+.+.|.+.+++|.+. .| +..+
T Consensus 99 ~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~ 176 (310)
T 3mv2_B 99 SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEM 176 (310)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHH
Confidence 333334455555555555555555555544331 123445555555555666666666666555543 23 1333
Q ss_pred HHHHHHHHH--hcC--CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C----CCCC
Q 007193 307 LSALIDFAG--HAG--KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI-----K----LKPT 373 (613)
Q Consensus 307 ~~~li~~~~--~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~----~~~~ 373 (613)
...+..++. ..| +..+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+. + -+.|
T Consensus 177 l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~ 254 (310)
T 3mv2_B 177 ILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYK 254 (310)
T ss_dssp HHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCC
Confidence 333443322 122 555566666655443 233222233333555566666666665544321 0 0123
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007193 374 VSTMNALITALCDGDQLPKTMEVLSDMKS 402 (613)
Q Consensus 374 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (613)
..+...+|......|+ +|.++++++.+
T Consensus 255 ~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 255 PTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 4444333333333443 55555655555
No 95
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.84 E-value=9.9e-07 Score=84.13 Aligned_cols=237 Identities=8% Similarity=0.071 Sum_probs=125.5
Q ss_pred cccchhhhHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhH--HHHHHHHHHHhCC---CCCHHH
Q 007193 21 YAHDVSEQLHSYNRLIRQGRI-SECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK--AIKEAFRFFKLVP---NPTLST 94 (613)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~-~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~---~~~~~~ 94 (613)
|+.........+..+++.|.+ ++|+++++.+...+ |...+....-..+....+ .+++++++++.+. +.+..+
T Consensus 28 y~~~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~a 105 (306)
T 3dra_A 28 YDEDYKQIMGLLLALMKAEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQI 105 (306)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHH
T ss_pred eCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHH
Confidence 333334444445555555555 57888888888877 666555554445555555 6666666666543 344555
Q ss_pred HHHHHHHH----HcC---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh--HHHHHHHHHHHCCCCCCHHHH
Q 007193 95 FNMLMSVC----ASS---KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD--AMFEVFHEMVNAGIEPNVHTY 165 (613)
Q Consensus 95 ~~~li~~~----~~~---~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~g~~~~~~~~ 165 (613)
|+.-...+ ... +++++++.+++.+.+.. +-+..+|+.-.-.+.+.|.++ ++++.++++.+.. +.|-..|
T Consensus 106 W~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW 183 (306)
T 3dra_A 106 WNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAW 183 (306)
T ss_dssp HHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHH
Confidence 65544433 333 55666666666666554 445556665555556666665 6666666666554 3355566
Q ss_pred HHHHHHHHhcCC------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHhhCCCCCCCCHHHHH
Q 007193 166 GALIDGCAKAGQ------VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR-AFDVLAEMNAEVHPVDPDHITIG 238 (613)
Q Consensus 166 ~~li~~~~~~g~------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~~~~~~~~~~~~~ 238 (613)
+.-...+.+.++ ++++++.++++.... +-|...|+-+-..+.+.|+... +..+..++......-+.+...+.
T Consensus 184 ~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~ 262 (306)
T 3dra_A 184 SHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALE 262 (306)
T ss_dssp HHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHH
T ss_pred HHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHH
Confidence 655555444444 555555555555442 3345555555555544444222 22333333221000122344555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 007193 239 ALMKACANAGQVDRAREVYKMIHK 262 (613)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~ 262 (613)
.+...|.+.|+.++|.++++.+.+
T Consensus 263 ~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 263 TLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHHHHh
Confidence 555555555555555555555543
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.83 E-value=1.3e-07 Score=85.55 Aligned_cols=192 Identities=9% Similarity=-0.013 Sum_probs=130.0
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCC
Q 007193 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSK 106 (613)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 106 (613)
..+..-..+++.|++++|+..|++..+.+ |.+...+.... ... .........+.+...+.+.|
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~--~~~-------------~~~~~~~~~~~lg~~~~~~g 68 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTN--VDK-------------NSEISSKLATELALAYKKNR 68 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHH--SCT-------------TSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhh--hcc-------------hhhhhHHHHHHHHHHHHHCC
Confidence 33444556779999999999999999876 55544332200 000 00112233455777888999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHH
Q 007193 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ--VAKAFGA 184 (613)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~ 184 (613)
++++|...|+...+.. +.+...+..+...+...|++++|.+.|++..+.. +.+..+|..+...|...|+ ...+...
T Consensus 69 ~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~ 146 (208)
T 3urz_A 69 NYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETD 146 (208)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999988875 5578888889999999999999999999988764 4467788888888766554 3455556
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHH
Q 007193 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 243 (613)
Q Consensus 185 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~ 243 (613)
+..... ..|....+..+..++...|++++|...|++... ..|+......+.+.
T Consensus 147 ~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~----l~P~~~~~~~l~~i 199 (208)
T 3urz_A 147 YKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL----RFPSTEAQKTLDKI 199 (208)
T ss_dssp HC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT----TSCCHHHHHHHHHH
T ss_pred HHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCCCHHHHHHHHHH
Confidence 655542 123333344455566678899999999999875 36777666655543
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.83 E-value=1.5e-07 Score=85.14 Aligned_cols=73 Identities=11% Similarity=0.056 Sum_probs=30.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007193 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384 (613)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 384 (613)
+..+|.+.|++++|...|+...+.. +.+...+..+...|...|++++|...|++..+.. +.+..+|..+...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYY 132 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 3334444444444444444444332 2233444444444444444444444444444332 12234444444443
No 98
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.81 E-value=3.5e-07 Score=86.12 Aligned_cols=185 Identities=10% Similarity=0.006 Sum_probs=123.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC-HHH
Q 007193 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT---PEVYTIAINCCSQTGDWEFACSVYDDMTKKGV-IPD-EVF 306 (613)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~-~~~ 306 (613)
.+...+-.+...+.+.|++++|...|+.+.+.. +.+ ...+..+..+|.+.|++++|+..|++..+..+ .|. ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 345566667777888888888888888887764 333 56777788888888888888888888877533 122 345
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007193 307 LSALIDFAGH--------AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378 (613)
Q Consensus 307 ~~~li~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 378 (613)
+..+..++.. .|++++|...|+.+.+.. +.+......+.. +..+.. .-...+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~--------------~~~~~~----~~~~~~~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQK--------------IRELRA----KLARKQY 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHH--------------HHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHH--------------HHHHHH----HHHHHHH
Confidence 5666666777 778888888888777653 222222222111 111110 0011245
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhhc----------CCHHHHHHHHHHHHHc
Q 007193 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPN----TITYSILLVACERK----------DDVEVGLMLLSQAKED 438 (613)
Q Consensus 379 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~----------g~~~~a~~~~~~m~~~ 438 (613)
.+...|.+.|++++|+..|+++.+. .|+ ...+..+..++... |++++|...++++++.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 6778888999999999999998874 343 34566677777765 8889999999998874
No 99
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.80 E-value=8.9e-08 Score=84.15 Aligned_cols=161 Identities=11% Similarity=0.146 Sum_probs=99.6
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCC--CCHHHHHHHHHH-H
Q 007193 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--PTLSTFNMLMSV-C 102 (613)
Q Consensus 26 ~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~-~ 102 (613)
......-..+.+.|++++|+..|++..+.. |.+...+..++.++...|++++|+..|+++.. |+...+...... +
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLEL 84 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHH
Confidence 344455556678888888888888877765 66666677777777777888888888877652 233333222211 1
Q ss_pred HcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 007193 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP-NVHTYGALIDGCAKAGQVAKA 181 (613)
Q Consensus 103 ~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A 181 (613)
...+....|...++...+.. +.+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 12222334566666666553 3456666667777777777777777777766553111 244666666777777777777
Q ss_pred HHHHHHHH
Q 007193 182 FGAYGIMR 189 (613)
Q Consensus 182 ~~~~~~m~ 189 (613)
...|++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77666554
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.78 E-value=1.3e-07 Score=102.25 Aligned_cols=169 Identities=8% Similarity=-0.038 Sum_probs=111.8
Q ss_pred HhcCCHHHHHHHHHHHH--------HcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHc
Q 007193 36 IRQGRISECIDLLEDME--------RKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCAS 104 (613)
Q Consensus 36 ~~~g~~~~A~~l~~~m~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 104 (613)
...|++++|++.|++.. +.. |.+...+..++..+...|++++|+..|++.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 46777888888887777 443 5555555566666667777777777777643 4466677777777777
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007193 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184 (613)
Q Consensus 105 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 184 (613)
.|++++|...|+...+.. +.+...+..+..+|.+.|++++ .+.|++..+.. +.+...|..+...+.+.|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777777654 3456667777777777777777 77777776653 34566677777777777777777777
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHccC
Q 007193 185 YGIMRSKNVKPD-RVVFNALITACGQSG 211 (613)
Q Consensus 185 ~~~m~~~g~~p~-~~~~~~li~~~~~~g 211 (613)
|++..+. .|+ ...+..+..++...+
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC---
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccC
Confidence 7777654 344 445555555554433
No 101
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.76 E-value=2.8e-07 Score=88.13 Aligned_cols=155 Identities=12% Similarity=0.111 Sum_probs=83.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC--CCCHHHHHHHH-HHHHcCCC
Q 007193 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLM-SVCASSKD 107 (613)
Q Consensus 31 ~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li-~~~~~~~~ 107 (613)
....+.+.|++++|...|++..+.. |.+...+..++.++...|++++|...|+++. .|+........ ..+.+.++
T Consensus 123 ~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~ 200 (287)
T 3qou_A 123 QAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAA 200 (287)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcc
Confidence 3334445666666666666666655 5555555555556666666666666666554 23332222221 22444555
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007193 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE-PNVHTYGALIDGCAKAGQVAKAFGAYG 186 (613)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~ 186 (613)
.+.|...++...+.. +.+...+..+...+...|++++|.+.|.++.+.... .+...+..++..+...|+.++|...|+
T Consensus 201 ~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r 279 (287)
T 3qou_A 201 DTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYR 279 (287)
T ss_dssp SCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHH
Confidence 555666665555543 444555566666666666666666666665554211 114455566666666666666655555
Q ss_pred HH
Q 007193 187 IM 188 (613)
Q Consensus 187 ~m 188 (613)
+.
T Consensus 280 ~a 281 (287)
T 3qou_A 280 RQ 281 (287)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 102
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.75 E-value=1.3e-07 Score=80.57 Aligned_cols=143 Identities=8% Similarity=-0.060 Sum_probs=106.6
Q ss_pred HHHHHhhhHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 007193 67 FFNVCKSQKAIKEAFRFFKLVPNP---TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143 (613)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 143 (613)
++.++.+.|++++|+..|.+..+. +...+..+...|.+.|++++|...|+...+.. +-+..+|..+..+|.+.|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 455667788999999998876543 34566778888999999999999999988875 55788899999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 007193 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA-YGIMRSKNVKPDRVVFNALITACGQSGA 212 (613)
Q Consensus 144 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~g~~p~~~~~~~li~~~~~~g~ 212 (613)
++|...|++..+.. +-+..+|..+...|.+.|+.++|.+. +++..+.. +-+..+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 99999999988764 34677888888889999988776655 47766542 3356667666666655553
No 103
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.73 E-value=2e-06 Score=78.04 Aligned_cols=173 Identities=14% Similarity=-0.022 Sum_probs=99.6
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 007193 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG----QVAKAFGAYG 186 (613)
Q Consensus 111 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~ 186 (613)
|++.|+...+.| ++..+..|...|...+++++|.+.|++..+.| +...+..|...|.. + ++++|+.+|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 445555555543 45556666666666666666666666666543 45555556665655 4 6666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCCC---HHHHHHHHHHHHh----cCChHHHHH
Q 007193 187 IMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPD---HITIGALMKACAN----AGQVDRARE 255 (613)
Q Consensus 187 ~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~---~~~~~~ll~~~~~----~g~~~~A~~ 255 (613)
+..+.| +...+..|...|.. .+++++|.+.|.+.... .++ ...+..|...|.. .+++++|..
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD----SESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS----TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc----CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 666544 44555555555555 56666666666666542 221 4555556666655 556666666
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 007193 256 VYKMIHKYNIKGTPEVYTIAINCCSQT-G-----DWEFACSVYDDMTKKG 299 (613)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~a~~~~~~m~~~g 299 (613)
.|++..+. +.+...+..|...|... | ++++|...|+...+.|
T Consensus 151 ~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 151 YFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 66666554 12234555555555432 2 5666666666665554
No 104
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.73 E-value=8.9e-06 Score=77.51 Aligned_cols=217 Identities=8% Similarity=-0.016 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hhc---CCH
Q 007193 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG--KVDAMFEVFHEMVNAGIEPNVHTYGALIDGC----AKA---GQV 178 (613)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~----~~~---g~~ 178 (613)
.++|+.+++.+...+ +-+..+|+.--..+...+ +++++++.++.+.... +.+..+|+.--..+ ... +++
T Consensus 49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCH
Confidence 345666666666553 334445555555555555 5666666666655543 33444454433333 333 455
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH--HHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCC------h
Q 007193 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD--RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ------V 250 (613)
Q Consensus 179 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~------~ 250 (613)
++++.+++++.+.. +-+-.+|+.-.-.+.+.|.++ ++++.++++.... +.|...|+.-...+.+.+. +
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d---~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD---LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHhccccchhhhH
Confidence 55555555555432 334445544444444444444 5555555554421 2344444443333333333 4
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007193 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF-ACSVYDDMTKKG--VIPDEVFLSALIDFAGHAGKVEAAFEIL 327 (613)
Q Consensus 251 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~~~~ 327 (613)
+++.+.++.+...+ +.|...|+-+-..+.+.|+... +..+..++...+ -..+...+..+...|.+.|+.++|.+++
T Consensus 203 ~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 203 DEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 44455554444443 3344445444444444444222 222333222211 0113344444444444444444444444
Q ss_pred HHHH
Q 007193 328 QEAK 331 (613)
Q Consensus 328 ~~~~ 331 (613)
+.+.
T Consensus 282 ~~l~ 285 (306)
T 3dra_A 282 DLLK 285 (306)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 105
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.72 E-value=1.6e-07 Score=101.52 Aligned_cols=173 Identities=12% Similarity=0.023 Sum_probs=98.4
Q ss_pred HhcCChHHHHHHHHHHH--------hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007193 245 ANAGQVDRAREVYKMIH--------KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (613)
Q Consensus 245 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 316 (613)
...|++++|.+.+++.. +.. +.+...+..+...+.+.|++++|++.|++..+.... +...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 44556666666665555 322 334455666666666666666666666666554332 45555666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHH
Q 007193 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 396 (613)
Q Consensus 317 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 396 (613)
.|++++|...|++..+.. +.+...+..+..+|.+.|++++ .+.|++..+.+ +.+...|..+..++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666665553 3345556666666666666666 66666665543 23455666666666677777777777
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHhhcCC
Q 007193 397 LSDMKSLGLCPN-TITYSILLVACERKDD 424 (613)
Q Consensus 397 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~ 424 (613)
|++..+ +.|+ ...+..+..++...++
T Consensus 557 ~~~al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCT--TSTTHHHHHHHHHHHTC----
T ss_pred HHhhcc--cCcccHHHHHHHHHHHHccCC
Confidence 666655 2454 3445455555544343
No 106
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.70 E-value=2.2e-06 Score=77.76 Aligned_cols=175 Identities=14% Similarity=0.077 Sum_probs=94.5
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 007193 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG----KVEAAFEILQ 328 (613)
Q Consensus 253 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~a~~~~~ 328 (613)
|.+.|++..+.+ ++.++..+...|...+++++|++.|++..+.| +...+..+...|.. + +.++|...|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 444444444432 34455555555555556666666665555543 33444444444444 4 5666666666
Q ss_pred HHHHCCCCcCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHc----CCChhHHHHHHHH
Q 007193 329 EAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLK-PTVSTMNALITALCD----GDQLPKTMEVLSD 399 (613)
Q Consensus 329 ~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~ 399 (613)
...+.+ ++..+..|...|.. .+++++|...|++..+.+.. .+...+..|...|.. .+++++|+..|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 655544 34455555555554 56666666666666654310 014555566666665 5566667777666
Q ss_pred HHhCCCCCCHHHHHHHHHHHhhc-C-----CHHHHHHHHHHHHHcC
Q 007193 400 MKSLGLCPNTITYSILLVACERK-D-----DVEVGLMLLSQAKEDG 439 (613)
Q Consensus 400 m~~~g~~p~~~t~~~ll~a~~~~-g-----~~~~a~~~~~~m~~~g 439 (613)
..+. .++...+..+-..|... | +.++|...+++..+.|
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 6654 12333444444444432 2 6677777777666655
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.69 E-value=5.7e-07 Score=85.95 Aligned_cols=166 Identities=10% Similarity=-0.005 Sum_probs=100.1
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007193 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203 (613)
Q Consensus 124 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 203 (613)
+.+...+..+...+...|++++|.+.|++..+.. +.+...+..+...+.+.|++++|...+++.... .|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 3344555566666667777777777777666553 335556666667777777777777777766554 3443332222
Q ss_pred H-HHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHH
Q 007193 204 I-TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT--PEVYTIAINCCS 280 (613)
Q Consensus 204 i-~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~ 280 (613)
. ..+...++.++|...+++.... -+.+...+..+...+...|++++|...|.++.+.+ +.+ ...+..++..+.
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~---~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~ 266 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAE---NPEDAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILA 266 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhc---CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHH
Confidence 2 2344555556666666666543 13345666666677777777777777777766654 222 456677777777
Q ss_pred hcCCHHHHHHHHHHHH
Q 007193 281 QTGDWEFACSVYDDMT 296 (613)
Q Consensus 281 ~~g~~~~a~~~~~~m~ 296 (613)
..|+.++|...+++..
T Consensus 267 ~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 267 ALGTGDALASXYRRQL 282 (287)
T ss_dssp HHCTTCHHHHHHHHHH
T ss_pred HcCCCCcHHHHHHHHH
Confidence 7777777766666543
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.69 E-value=2.2e-07 Score=81.57 Aligned_cols=160 Identities=12% Similarity=0.086 Sum_probs=88.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHh
Q 007193 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF-AGH 316 (613)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~ 316 (613)
..+...+.+.|++++|...|++..+.+ +.+...+..+...+...|++++|+..|+....... +...+...... +..
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHh
Confidence 334455666667777776666655543 44456666666666677777777776666554432 33222211111 111
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCChhHHHH
Q 007193 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-TVSTMNALITALCDGDQLPKTME 395 (613)
Q Consensus 317 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~ 395 (613)
.+....|...++...+.. +.+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 112223455566555543 3345666666666666677777776666666543221 24456666666666666666666
Q ss_pred HHHHHH
Q 007193 396 VLSDMK 401 (613)
Q Consensus 396 l~~~m~ 401 (613)
.|++..
T Consensus 166 ~y~~al 171 (176)
T 2r5s_A 166 KYRRQL 171 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666543
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.66 E-value=2.2e-06 Score=78.59 Aligned_cols=199 Identities=9% Similarity=-0.029 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----H
Q 007193 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN----VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR----V 198 (613)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~ 198 (613)
...+..+...+.+.|++++|...|+++.+.. |+ ...+..+..+|.+.|++++|+..|+++.+. .|+. .
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~ 79 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDY 79 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHH
Confidence 3445555666777788888888887777642 22 245666777777778888888887777664 2221 1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 007193 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 278 (613)
Q Consensus 199 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 278 (613)
.+..+..++...+.. .+. .+..+...+...|++++|...|+++.+.. +.+...+.+....
T Consensus 80 a~~~~g~~~~~~~~~-----~~~--------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l 139 (225)
T 2yhc_A 80 VMYMRGLTNMALDDS-----ALQ--------------GFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRL 139 (225)
T ss_dssp HHHHHHHHHHHHHC---------------------------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHH
T ss_pred HHHHHHHHHHhhhhh-----hhh--------------hhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHH
Confidence 333333333332110 000 01111222233455666666666665543 2222222211100
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC---HHhHHHHHHHHHhcCCH
Q 007193 279 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG---IISYSSLMGACSNAKNW 355 (613)
Q Consensus 279 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~ 355 (613)
. .+...+. .....+...|.+.|++++|...|+.+.+.. +.+ ...+..+..+|.+.|+.
T Consensus 140 ~----------~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~ 200 (225)
T 2yhc_A 140 V----------FLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMN 200 (225)
T ss_dssp H----------HHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCH
T ss_pred H----------HHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCc
Confidence 0 0000000 011233445556666666666666666542 111 23455666666666666
Q ss_pred HHHHHHHHHHHhC
Q 007193 356 QKALELYEHMKSI 368 (613)
Q Consensus 356 ~~A~~~~~~m~~~ 368 (613)
++|.+.++.+...
T Consensus 201 ~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 201 AQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh
Confidence 6666666666554
No 110
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.65 E-value=1.8e-07 Score=79.69 Aligned_cols=139 Identities=9% Similarity=-0.011 Sum_probs=68.4
Q ss_pred HccCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 007193 208 GQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286 (613)
Q Consensus 208 ~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 286 (613)
...|++++|...+...... .|+ ...+..+...|.+.|++++|.+.|++..+.+ +.+..+|..+...|.+.|+++
T Consensus 8 ~~~~~~e~ai~~~~~a~~~----~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPS----PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCS----HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHcChHHHHHHHHHHhccc----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchH
Confidence 3445555555555554321 121 2233345555555566666666665555544 444555555555555556666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCcCHHhHHHHHHHHHhcC
Q 007193 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI-LQEAKNQGISVGIISYSSLMGACSNAK 353 (613)
Q Consensus 287 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g 353 (613)
+|+..|++..+..+. +...+..+...|.+.|+.++|... ++...+.. |-++.+|......+.+.|
T Consensus 83 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 83 KAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 666555555554322 344555555555555555444333 34444432 233444444444444333
No 111
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.64 E-value=2.7e-06 Score=77.96 Aligned_cols=204 Identities=10% Similarity=-0.032 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCH-HHHH
Q 007193 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK-PD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH-ITIG 238 (613)
Q Consensus 162 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-~~~~ 238 (613)
...+..+...+.+.|++++|...|+++...... |. ...+..+..++.+.|++++|...|+++....+ -.+.. ..+.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P-~~~~~~~a~~ 82 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP-THPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCCcHHHHHH
Confidence 444555666677777888888888777764211 11 24566667777777777777777777765421 11111 1233
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007193 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (613)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 318 (613)
.+..++...+.. .+ ..|..+...+...|++++|...|+++.+..+. +...+...... +
T Consensus 83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----~ 140 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----V 140 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----H
T ss_pred HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----H
Confidence 333333332210 11 11223334445678889999999998876432 22222211110 0
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHcCCChhHHH
Q 007193 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT----VSTMNALITALCDGDQLPKTM 394 (613)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~ 394 (613)
.+...+ ......+...|.+.|++++|...|+++.+.. |+ ...+..+..+|.+.|+.++|.
T Consensus 141 ------~~~~~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~ 204 (225)
T 2yhc_A 141 ------FLKDRL--------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAE 204 (225)
T ss_dssp ------HHHHHH--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ------HHHHHH--------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHH
Confidence 001111 0112356678899999999999999998753 43 256888999999999999999
Q ss_pred HHHHHHHhCC
Q 007193 395 EVLSDMKSLG 404 (613)
Q Consensus 395 ~l~~~m~~~g 404 (613)
+.++.+...+
T Consensus 205 ~~~~~l~~~~ 214 (225)
T 2yhc_A 205 KVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHhhC
Confidence 9999988753
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.63 E-value=8.1e-07 Score=94.08 Aligned_cols=154 Identities=12% Similarity=-0.038 Sum_probs=105.9
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007193 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (613)
Q Consensus 210 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 289 (613)
.|++++|.+.+++.... .+.+...+..+...|.+.|++++|.+.|++..+.+ +.+...+..+...|...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH---RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 46778888888887653 13346777778888888888888888888888765 556778888888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhc---CCHHHHHHHHHHHH
Q 007193 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA---KNWQKALELYEHMK 366 (613)
Q Consensus 290 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~ 366 (613)
+.+++..+.... +...+..+...+.+.|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.+++..
T Consensus 78 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 78 VLLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 888888776433 56777888888888888888888888887764 44567777888888888 88888888888877
Q ss_pred hCC
Q 007193 367 SIK 369 (613)
Q Consensus 367 ~~~ 369 (613)
+.+
T Consensus 156 ~~~ 158 (568)
T 2vsy_A 156 AQG 158 (568)
T ss_dssp HHT
T ss_pred hcC
Confidence 654
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.61 E-value=1.3e-06 Score=92.47 Aligned_cols=155 Identities=13% Similarity=0.022 Sum_probs=97.2
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 007193 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219 (613)
Q Consensus 140 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 219 (613)
.|++++|.+.|++..+.. +.+...|..+...|.+.|++++|...|++..+.. +.+...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 366777777777776553 3356677777777777888888888887777653 33466777777777777888888877
Q ss_pred HHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHH
Q 007193 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT---GDWEFACSVYDDMT 296 (613)
Q Consensus 220 ~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~ 296 (613)
+++..... +.+...+..+...|.+.|++++|.+.|++..+.+ +.+...+..+...+... |++++|.+.+++..
T Consensus 80 ~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 80 LQQASDAA---PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 77776531 3345667777777777778888877777777664 44566777777777777 77777777777776
Q ss_pred HCCC
Q 007193 297 KKGV 300 (613)
Q Consensus 297 ~~g~ 300 (613)
+.+.
T Consensus 156 ~~~p 159 (568)
T 2vsy_A 156 AQGV 159 (568)
T ss_dssp HHTC
T ss_pred hcCC
Confidence 6543
No 114
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.58 E-value=4.2e-06 Score=75.68 Aligned_cols=125 Identities=15% Similarity=-0.004 Sum_probs=103.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh
Q 007193 65 ARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144 (613)
Q Consensus 65 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 144 (613)
..++..+...|++++|+..|++..+++...|..+...+...|++++|...++...+.. +.+...+..+..+|...|+++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 3445556677889999999998888888889999999999999999999999988775 557788888999999999999
Q ss_pred HHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007193 145 AMFEVFHEMVNAGIEPN----------------VHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (613)
Q Consensus 145 ~a~~~~~~m~~~g~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (613)
+|.+.|++..+.. +.+ ...+..+...|.+.|++++|...|++..+.
T Consensus 89 ~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 89 LAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 9999999988753 222 267888888899999999999999998876
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.54 E-value=1.5e-06 Score=83.91 Aligned_cols=229 Identities=12% Similarity=-0.013 Sum_probs=139.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHH
Q 007193 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR 116 (613)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 116 (613)
..|++++|.+++++..+... .. ++...+++++|...|.+ ....|...|++++|...|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~--~~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK--TS---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC--CC---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc--cc---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHH
Confidence 45778888888887776431 10 01112456666665544 3456677788888887777
Q ss_pred HHHHcCC---CC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHH
Q 007193 117 LVQEAGL---KA--DCKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIEP--NVHTYGALIDGCAKAGQVAKAFGAY 185 (613)
Q Consensus 117 ~m~~~g~---~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~--~~~~~~~li~~~~~~g~~~~A~~~~ 185 (613)
+..+... .+ -..+|+.+...|.+.|++++|...|++..+. | .+ -..+++.+...|.. |++++|+..|
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~~~~ 138 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAVHLY 138 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 6654310 11 1346777777888888888888888775532 2 11 13567777777777 8888888888
Q ss_pred HHHHhC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC--CCCCC-HHHHHHHHHHHHhcCChHHHHHHH
Q 007193 186 GIMRSK----NVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVH--PVDPD-HITIGALMKACANAGQVDRAREVY 257 (613)
Q Consensus 186 ~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~ 257 (613)
++.... |-.+ ...+++.+...|.+.|++++|...|++...... +..+. ...+..+...+...|++++|...|
T Consensus 139 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~ 218 (307)
T 2ifu_A 139 QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCV 218 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 776542 1100 135677777888888888888888877654211 11112 235566666777778888888888
Q ss_pred HHHHhcCCC--CC--HHHHHHHHHHHHhcCCHHHHHHH
Q 007193 258 KMIHKYNIK--GT--PEVYTIAINCCSQTGDWEFACSV 291 (613)
Q Consensus 258 ~~~~~~~~~--~~--~~~~~~li~~~~~~g~~~~a~~~ 291 (613)
++.. .... .. ......++..+ ..|+.+.+.++
T Consensus 219 ~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 219 RESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 8776 3211 11 12344455544 56676665553
No 116
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.53 E-value=0.00013 Score=75.17 Aligned_cols=354 Identities=8% Similarity=-0.024 Sum_probs=194.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHH-HHHHHHHHHhCC------CCCHHHHHHHHHHHHc----C
Q 007193 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA-IKEAFRFFKLVP------NPTLSTFNMLMSVCAS----S 105 (613)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~------~~~~~~~~~li~~~~~----~ 105 (613)
-.|+++.|..+|++....- | +..++...+.+..+.++ .+....+|+... ..+...|...+..+.. .
T Consensus 26 P~~~~e~~~~iferal~~~--p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~ 102 (493)
T 2uy1_A 26 MSKDYRSLESLFGRCLKKS--Y-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQ 102 (493)
T ss_dssp HTTCHHHHHHHHHHHSTTC--C-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHH
T ss_pred CCCCHHHHHHHHHHHhccC--C-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhh
Confidence 4589999999999998853 5 44455555555544442 234455565422 3467888888876542 4
Q ss_pred CChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007193 106 KDSEGAFQVLRLVQEAGLKAD--CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183 (613)
Q Consensus 106 ~~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 183 (613)
++.+.+..+|++.... ++. ...|......- +......+.++..+.. +.+..|..
T Consensus 103 ~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~~~~~---------------------~~y~~ar~ 158 (493)
T 2uy1_A 103 TRIEKIRNGYMRALQT--PMGSLSELWKDFENFE-LELNKITGKKIVGDTL---------------------PIFQSSFQ 158 (493)
T ss_dssp HHHHHHHHHHHHHHTS--CCTTHHHHHHHHHHHH-HHHCHHHHHHHHHHHH---------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHHH-HHhccccHHHHHHHHh---------------------HHHHHHHH
Confidence 5688899999999873 322 12222222111 1111222222222211 11222222
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHccC-------CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 007193 184 AYGIMRSKNVKPDRVVFNALITACGQSG-------AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256 (613)
Q Consensus 184 ~~~~m~~~g~~p~~~~~~~li~~~~~~g-------~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 256 (613)
+++.+...--..+...|...+.--...+ ..+.+..+|+++... .+.+...|...+..+.+.|+++.|..+
T Consensus 159 ~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~---~p~~~~lW~~ya~~~~~~~~~~~ar~i 235 (493)
T 2uy1_A 159 RYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS---FYYAEEVYFFYSEYLIGIGQKEKAKKV 235 (493)
T ss_dssp HHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2222221000012234444333222110 023455666666542 233455666666666677777777777
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---------CCCC---CHHHHHHHHHHHHhcCCHHHHH
Q 007193 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK---------GVIP---DEVFLSALIDFAGHAGKVEAAF 324 (613)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------g~~p---~~~~~~~li~~~~~~g~~~~a~ 324 (613)
|++.... +.+...|.... .....++. ++.+.+. +..+ ....|...+....+.+..+.|.
T Consensus 236 ~erAi~~--P~~~~l~~~y~----~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR 306 (493)
T 2uy1_A 236 VERGIEM--SDGMFLSLYYG----LVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFR 306 (493)
T ss_dssp HHHHHHH--CCSSHHHHHHH----HHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHhC--CCcHHHHHHHH----hhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHH
Confidence 7777665 33433333221 11111111 1221110 0001 1245666666666778899999
Q ss_pred HHHHHHHHCCCCcCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 007193 325 EILQEAKNQGISVGIISYSSLMGACSNAK-NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (613)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 403 (613)
.+|... +.. ..+..+|......-...+ +.+.|..+|+...+.- +.+...|...+....+.|+.+.|..+|+++.
T Consensus 307 ~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-- 381 (493)
T 2uy1_A 307 KLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-- 381 (493)
T ss_dssp HHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--
T ss_pred HHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--
Confidence 999988 322 234444443333333333 6899999999887642 2345567777887788899999999998872
Q ss_pred CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 404 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
.....|...+.--...|+.+.+..+++++.+
T Consensus 382 ---k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 382 ---KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp ---CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2567788888777788999999998988774
No 117
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.51 E-value=2.5e-06 Score=82.40 Aligned_cols=224 Identities=15% Similarity=0.049 Sum_probs=133.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 007193 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254 (613)
Q Consensus 175 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 254 (613)
.|++++|.+++++..+.. +.. + +...++++.|...|.+. ...|...|++++|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a-----------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA-----------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH-----------------HHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH-----------------HHHHHHcCCHHHHH
Confidence 466777877777765431 110 0 11135666666666553 34566778888888
Q ss_pred HHHHHHHhcCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHHhcCCHHHHH
Q 007193 255 EVYKMIHKYNI---KG--TPEVYTIAINCCSQTGDWEFACSVYDDMTKKG---VIPD--EVFLSALIDFAGHAGKVEAAF 324 (613)
Q Consensus 255 ~~~~~~~~~~~---~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~--~~~~~~li~~~~~~g~~~~a~ 324 (613)
..|.+..+... .+ -..+|+.+...|.+.|++++|+..|++..+.- -.|. ..++..+...|.. |++++|.
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 88776644311 00 13467777788888888888888887765421 0111 2456666677767 8888888
Q ss_pred HHHHHHHHCCC----C-cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHcCCChhHHH
Q 007193 325 EILQEAKNQGI----S-VGIISYSSLMGACSNAKNWQKALELYEHMKSI----KLKPT-VSTMNALITALCDGDQLPKTM 394 (613)
Q Consensus 325 ~~~~~~~~~~~----~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~ 394 (613)
..|++..+... . ....+++.+...|.+.|++++|...|++..+. +..+. ...+..+...+...|++++|+
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 88877654311 0 01356777777888888888888888776542 11111 225556666777778888888
Q ss_pred HHHHHHHhCCCCCC------HHHHHHHHHHHhhcCCHHHHHH
Q 007193 395 EVLSDMKSLGLCPN------TITYSILLVACERKDDVEVGLM 430 (613)
Q Consensus 395 ~l~~~m~~~g~~p~------~~t~~~ll~a~~~~g~~~~a~~ 430 (613)
..|++.. . .|+ ......++.++ ..|+.+....
T Consensus 216 ~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 216 KCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 8888776 3 232 12233444444 4566555444
No 118
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.50 E-value=9.1e-05 Score=71.34 Aligned_cols=183 Identities=6% Similarity=-0.020 Sum_probs=117.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007193 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (613)
Q Consensus 95 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (613)
++.+.....+.+..++|+++++.+...+ +-+..+|+.--..+...| .+++++++++.+.... +.+..+|+.-...+.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3333344455556678888888888765 445667777777777777 4888888888888765 456777877766666
Q ss_pred hc-C-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH--------HHHHHHHHHhhCCCCCCCCHHHHHHHHHH
Q 007193 174 KA-G-QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD--------RAFDVLAEMNAEVHPVDPDHITIGALMKA 243 (613)
Q Consensus 174 ~~-g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~~~~~~~~~~~~~~ll~~ 243 (613)
+. + ++++++.+++++.+.. +.|-.+|+.-.-.+.+.+..+ ++++.++++.... +.|...|+.....
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d---p~N~SAW~~R~~l 210 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD---GRNNSAWGWRWYL 210 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHH
T ss_pred HhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC---CCCHHHHHHHHHH
Confidence 65 6 7788888888887653 446666665444444333333 6666776666531 3456666666666
Q ss_pred HHhcCC-------hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 007193 244 CANAGQ-------VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284 (613)
Q Consensus 244 ~~~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 284 (613)
+.+.+. ++++.+.+++....+ +.|...|+-+-..+.+.|+
T Consensus 211 L~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 211 RVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 666554 466666666666654 5566666665555555444
No 119
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.46 E-value=6.5e-06 Score=66.69 Aligned_cols=98 Identities=15% Similarity=0.165 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007193 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (613)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 171 (613)
...|..+...+...|++++|...++.+.+.. +.+..++..+...+.+.|++++|...|+++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3455555566666666666666666665543 3345556666666666666666666666655543 3345555566666
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 007193 172 CAKAGQVAKAFGAYGIMRSK 191 (613)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~ 191 (613)
|...|++++|...|+++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 66666666666666665543
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.44 E-value=2e-05 Score=71.09 Aligned_cols=124 Identities=12% Similarity=-0.018 Sum_probs=61.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 007193 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (613)
Q Consensus 203 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 282 (613)
+...+...|++++|...|.+.. .|+...+..+...|.+.|++++|...|++..+.+ +.+...|..+...|...
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 3444445555555555554432 2344455555555555555555555555554443 33444555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 283 GDWEFACSVYDDMTKKGVI--------------P-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (613)
Q Consensus 283 g~~~~a~~~~~~m~~~g~~--------------p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (613)
|++++|.+.|++..+.... | ....+..+..++...|++++|...++...+.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 5555555555555543211 0 1134445555555555555555555555544
No 121
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.44 E-value=0.00016 Score=69.60 Aligned_cols=174 Identities=6% Similarity=-0.066 Sum_probs=128.1
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc-C-CHHH
Q 007193 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG-QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS-G-AVDR 215 (613)
Q Consensus 139 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g-~~~~ 215 (613)
+.+..++|+++++.++... +-+..+|+.--..+...| .+++++.+++.+.... +-+..+|+.-...+.+. + +.++
T Consensus 66 ~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 3345578999999998875 446777888877777888 5999999999999874 45677888766666665 6 7889
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChH--------HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---
Q 007193 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD--------RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD--- 284 (613)
Q Consensus 216 a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--- 284 (613)
++++++.+... -+.|..+|+--.-.+.+.|.++ ++.+.++++.+.+ +.+...|+.....+.+.+.
T Consensus 144 EL~~~~k~L~~---dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 144 EIEYIHGSLLP---DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHTSS---CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHh---CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccccc
Confidence 99999999864 2456777776655555555555 8888888888876 5677788887777777775
Q ss_pred ----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007193 285 ----WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319 (613)
Q Consensus 285 ----~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 319 (613)
++++++.+.+.....+. |...|+-+-..+.+.|+
T Consensus 220 ~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 67788888887776554 66777666555555554
No 122
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.43 E-value=3.4e-05 Score=73.76 Aligned_cols=125 Identities=7% Similarity=0.000 Sum_probs=59.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCC-CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHH
Q 007193 241 MKACANAGQVDRAREVYKMIHKYNIK-GTP----EVYTIAINCCSQTGDWEFACSVYDDMTKKGVI-PD----EVFLSAL 310 (613)
Q Consensus 241 l~~~~~~g~~~~A~~~~~~~~~~~~~-~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~~~~~l 310 (613)
+..+...|++++|..++++..+.... ++. ..+..+...+...+++++|+..|++....... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 45556666666666666666553211 110 12223444555555666666666666553211 11 1235555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC-----CCCc-CHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 311 IDFAGHAGKVEAAFEILQEAKNQ-----GISV-GIISYSSLMGACSNAKNWQKALELYEHM 365 (613)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~~~~~-----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (613)
...|...|++++|...++++.+. +..+ ...++..+...|.+.|++++|...+++.
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a 222 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 55555555555555555555421 1011 1124444444555555555555554443
No 123
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.42 E-value=3.4e-05 Score=73.74 Aligned_cols=162 Identities=6% Similarity=-0.081 Sum_probs=100.2
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-CC----HHHHHH
Q 007193 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI----TIGALMKACANAGQVDRAREVYKMIHKYNIK-GT----PEVYTI 274 (613)
Q Consensus 204 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~----~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~ 274 (613)
+..+...|++++|..++++..... ...|+.. .+..+...+...+++++|...|++..+.... ++ ..+++.
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 455666777777777777765431 1222211 2233555556666777777777777663221 11 235777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcC-HHhHH
Q 007193 275 AINCCSQTGDWEFACSVYDDMTK----K-GVIPD-EVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GISVG-IISYS 343 (613)
Q Consensus 275 li~~~~~~g~~~~a~~~~~~m~~----~-g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~ 343 (613)
+...|...|++++|+..|+++.+ . +..+. ..++..+...|.+.|++++|...+++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 77778888888888888777663 1 11111 236677777888888888888888776542 21111 45677
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHH
Q 007193 344 SLMGACSNAK-NWQKALELYEHMK 366 (613)
Q Consensus 344 ~li~~~~~~g-~~~~A~~~~~~m~ 366 (613)
.+..+|.+.| .+++|.+.|++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 7777788888 4578877777654
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.40 E-value=1.2e-05 Score=69.14 Aligned_cols=128 Identities=11% Similarity=0.042 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007193 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (613)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (613)
..|..+...+...|++++|...|+...+.. +.+..++..+...+...|++++|.+.|++..+.. +.+..+|..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345556666677777777777777766653 4456666667777777777777777777766553 33556666666677
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHccCCHHHHHHHHHHH
Q 007193 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNA--LITACGQSGAVDRAFDVLAEM 223 (613)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~--li~~~~~~g~~~~a~~~~~~m 223 (613)
...|++++|...|++..+.. +.+...+.. +...+...|++++|.+.+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 77777777777777666542 223333322 223355556666666665544
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.39 E-value=1.5e-05 Score=68.58 Aligned_cols=95 Identities=12% Similarity=-0.030 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007193 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (613)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 316 (613)
+..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...+.+....... +...+..+...+..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHH
Confidence 3334444445555555555555544433 333444555555555555555555555554443221 33444444445555
Q ss_pred cCCHHHHHHHHHHHHHC
Q 007193 317 AGKVEAAFEILQEAKNQ 333 (613)
Q Consensus 317 ~g~~~~a~~~~~~~~~~ 333 (613)
.|++++|...+....+.
T Consensus 94 ~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 94 LGKFRAALRDYETVVKV 110 (166)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHh
Confidence 55555555555554443
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.38 E-value=1.7e-05 Score=64.13 Aligned_cols=93 Identities=20% Similarity=0.159 Sum_probs=36.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007193 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (613)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 316 (613)
+..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|...|+++...... +..++..+...+..
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~ 89 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHH
Confidence 3333344444444444444444443332 223333444444444444444444444444332211 23333333344444
Q ss_pred cCCHHHHHHHHHHHH
Q 007193 317 AGKVEAAFEILQEAK 331 (613)
Q Consensus 317 ~g~~~~a~~~~~~~~ 331 (613)
.|++++|...+..+.
T Consensus 90 ~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 90 QGDYDEAIEYYQKAL 104 (125)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHH
Confidence 444444444444433
No 127
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.36 E-value=1.4e-05 Score=65.41 Aligned_cols=97 Identities=10% Similarity=-0.019 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007193 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (613)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (613)
..+......+.+.|++++|++.|+...+.. +.+..+|..+..+|.+.|++++|++.|++..+.. +.+...|..+..+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 345556666777777777777777776654 4556677777777777777777777777766653 34566677777777
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 007193 173 AKAGQVAKAFGAYGIMRSK 191 (613)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~ 191 (613)
...|++++|+..|++..+.
T Consensus 92 ~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 7777777777777776654
No 128
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.35 E-value=8.6e-05 Score=70.89 Aligned_cols=167 Identities=8% Similarity=-0.037 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC-CCC--
Q 007193 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR------VVFNALITACGQSGAVDRAFDVLAEMNAEVHPV-DPD-- 233 (613)
Q Consensus 163 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~-- 233 (613)
..+...+..+...|++++|.+.+.+..+.... .. ..+..+...+...|++++|...+.+........ .+.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34555667778888888888888777664211 11 123334455667778888888887766421111 111
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-
Q 007193 234 HITIGALMKACANAGQVDRAREVYKMIHKY--NIKGT----PEVYTIAINCCSQTGDWEFACSVYDDMTKK----GVIP- 302 (613)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p- 302 (613)
..+++.+...|...|++++|...|++..+. ..+.+ ..+++.+...|.+.|++++|+..+++..+. +...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 346677777788888888888888776521 11111 146677777777777777777777766532 1111
Q ss_pred CHHHHHHHHHHHHhcCCHHHH-HHHHHHH
Q 007193 303 DEVFLSALIDFAGHAGKVEAA-FEILQEA 330 (613)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~a-~~~~~~~ 330 (613)
-..+|..+...|...|+.++| ...++..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 145566666677777777777 5555544
No 129
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.35 E-value=1.7e-05 Score=64.94 Aligned_cols=91 Identities=11% Similarity=-0.014 Sum_probs=38.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007193 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319 (613)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 319 (613)
....|.+.|++++|...|++..+.+ +.+..+|..+..+|.+.|++++|+..|++..+.+.. +...|..+..++...|+
T Consensus 19 ~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~ 96 (126)
T 4gco_A 19 KGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLVAMRE 96 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHCCC
Confidence 3344444444444444444444433 333344444444444444444444444444433221 33334444444444444
Q ss_pred HHHHHHHHHHHHH
Q 007193 320 VEAAFEILQEAKN 332 (613)
Q Consensus 320 ~~~a~~~~~~~~~ 332 (613)
+++|...|+...+
T Consensus 97 ~~~A~~~~~~al~ 109 (126)
T 4gco_A 97 WSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 130
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.34 E-value=3.8e-06 Score=71.16 Aligned_cols=103 Identities=8% Similarity=-0.021 Sum_probs=79.9
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007193 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (613)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 170 (613)
+...+..+...+.+.|++++|...|+...+.. +.+...|..+..+|...|++++|.+.|++..+.. +.+...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 44566777777888888888888888888765 5567788888888888888888888888887764 445677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 007193 171 GCAKAGQVAKAFGAYGIMRSKNVKPDR 197 (613)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p~~ 197 (613)
+|.+.|++++|...|++..+. .|+.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l--~~~~ 137 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH--SNDE 137 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCH
Confidence 888888888888888888765 4554
No 131
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.34 E-value=8.7e-05 Score=70.85 Aligned_cols=160 Identities=6% Similarity=-0.044 Sum_probs=68.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HHHH
Q 007193 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTP------EVYTIAINCCSQTGDWEFACSVYDDMTKKGV---IPD--EVFL 307 (613)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~---~p~--~~~~ 307 (613)
..+..+...|++++|.+.+....+.... .. ..+..+...+...|++++|+..+.+...... .+. ..++
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 3444455555555555555554443211 11 1122233444455555555555555543211 111 2244
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH---C-CCCc--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHH
Q 007193 308 SALIDFAGHAGKVEAAFEILQEAKN---Q-GISV--GIISYSSLMGACSNAKNWQKALELYEHMKSI----KLKPT-VST 376 (613)
Q Consensus 308 ~~li~~~~~~g~~~~a~~~~~~~~~---~-~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~ 376 (613)
+.+...|...|++++|...+.+..+ . +..+ ...+++.+...|.+.|++++|...+++..+. +.... ..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 4555555555555555555554431 1 0000 1134444555555555555555555544321 00000 334
Q ss_pred HHHHHHHHHcCCChhHH-HHHHHH
Q 007193 377 MNALITALCDGDQLPKT-MEVLSD 399 (613)
Q Consensus 377 ~~~li~~~~~~g~~~~A-~~l~~~ 399 (613)
|..+...|.+.|++++| ...+++
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 44444445555555554 333443
No 132
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.34 E-value=1.9e-06 Score=82.06 Aligned_cols=97 Identities=13% Similarity=-0.077 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007193 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (613)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 313 (613)
...+..+...+.+.|++++|...|++..+.. +.+...|..+...|.+.|++++|...+++..+.... +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3444555555666666666666666655543 334555666666666666666666666665554332 44555555556
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 007193 314 AGHAGKVEAAFEILQEAKN 332 (613)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~ 332 (613)
+...|++++|...|....+
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666655544
No 133
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.33 E-value=1.8e-05 Score=65.01 Aligned_cols=115 Identities=11% Similarity=0.077 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007193 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (613)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 313 (613)
...+..+...+.+.|++++|...|++..+.. +.+..++..+...+...|++++|.+.+++..+.... +...+..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHH
Confidence 4455555566666666666666666665543 334555666666666666666666666666554322 44555555556
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHh
Q 007193 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (613)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 351 (613)
+.+.|++++|...+....+.. +.+...+..+...+.+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHH
Confidence 666666666666666655543 2233344444444433
No 134
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.33 E-value=6e-05 Score=70.16 Aligned_cols=188 Identities=12% Similarity=0.029 Sum_probs=120.3
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHHcCChhHHHHHHHHHHHCCCCCC---------------
Q 007193 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTL-------ITTCAKSGKVDAMFEVFHEMVNAGIEPN--------------- 161 (613)
Q Consensus 104 ~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l-------i~~~~~~g~~~~a~~~~~~m~~~g~~~~--------------- 161 (613)
..++...|.+.|....+.. +-....|+.+ ...+.+.++..++...+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 5678888888888888764 4456777766 3455555555555444444332 1221
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-
Q 007193 162 -------VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD- 233 (613)
Q Consensus 162 -------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~- 233 (613)
...+-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... . .|.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~-d~~~ 169 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--P-DKFL 169 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--S-CHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--C-Cccc
Confidence 122344566677788888888888877765 344435555556777888888888888755431 0 111
Q ss_pred -HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007193 234 -HITIGALMKACANAGQVDRAREVYKMIHKYNIKGT--PEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (613)
Q Consensus 234 -~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 299 (613)
...+..+..++.+.|++++|++.|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 23556667778888888888888887765433132 3456666777778888888888888887764
No 135
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.33 E-value=7.5e-06 Score=71.61 Aligned_cols=120 Identities=13% Similarity=0.125 Sum_probs=87.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHcCCCh--hH
Q 007193 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA-LCDGDQL--PK 392 (613)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~--~~ 392 (613)
..|++++|...+....+.. +.+...+..+...|...|++++|...|++..+.. +.+...|..+... +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 3566777777777776654 4566777888888888888888888888776643 3456677777777 7788887 88
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 007193 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (613)
Q Consensus 393 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 438 (613)
|+..+++..+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 888888887752 235667777888888889999999988888874
No 136
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.32 E-value=0.00028 Score=67.66 Aligned_cols=166 Identities=7% Similarity=-0.002 Sum_probs=101.1
Q ss_pred hcCCHH-HHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHH----------HHHHHHHHHhCC---CCCHHHHHHHHHHH
Q 007193 37 RQGRIS-ECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA----------IKEAFRFFKLVP---NPTLSTFNMLMSVC 102 (613)
Q Consensus 37 ~~g~~~-~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~---~~~~~~~~~li~~~ 102 (613)
+.|.++ +|+++++.+...+ |.+.+....-..+....+. +++++.+++.+. +.+..+|+.-.-.+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 566665 7888888888877 6555544433333333222 566777766543 45666777666666
Q ss_pred HcCC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----
Q 007193 103 ASSK--DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA---- 175 (613)
Q Consensus 103 ~~~~--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---- 175 (613)
...+ .+++++.+++.+.+.. +.|..+|+.-.-++...|. ++++++.++.+.+.. +.|...|+.....+.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhcc
Confidence 6666 3677777777777665 5566667666666666666 467777777777654 44666676665555544
Q ss_pred ----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007193 176 ----------GQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207 (613)
Q Consensus 176 ----------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 207 (613)
+.++++++.+.+..... +-|...|+-+-..+
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll 237 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLL 237 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 33566666666665542 33555555443333
No 137
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.31 E-value=1.5e-06 Score=82.70 Aligned_cols=97 Identities=8% Similarity=-0.087 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007193 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (613)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 171 (613)
...+..+...+.+.|++++|...|+...+.. +.+...|..+...|.+.|++++|.+.+++..+.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3445555555556666666666666555543 3345555555556666666666666666555442 2344555555555
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 007193 172 CAKAGQVAKAFGAYGIMRS 190 (613)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~ 190 (613)
|...|++++|...|++..+
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666665555543
No 138
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.31 E-value=1.5e-05 Score=65.17 Aligned_cols=117 Identities=10% Similarity=0.032 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007193 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (613)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 171 (613)
...+..+...+...|++++|...++...... +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 3445555555666666666666666665543 3345555566666666666666666666655442 2335555555556
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 007193 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211 (613)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 211 (613)
+.+.|++++|...|++..+.. +.+...+..+..++...|
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence 666666666666666555442 223444444444444433
No 139
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.28 E-value=2.1e-05 Score=64.19 Aligned_cols=90 Identities=10% Similarity=-0.031 Sum_probs=34.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007193 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319 (613)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 319 (613)
+...+...|++++|...|++..... +.+...+..+...+...|++++|.+.+......... +...+..+...+...|+
T Consensus 18 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 95 (131)
T 2vyi_A 18 EGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLALSSLNK 95 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHHHHHhCC
Confidence 3333444444444444444443332 223333444444444444444444444443332211 23333333333334444
Q ss_pred HHHHHHHHHHHH
Q 007193 320 VEAAFEILQEAK 331 (613)
Q Consensus 320 ~~~a~~~~~~~~ 331 (613)
+++|...+....
T Consensus 96 ~~~A~~~~~~~~ 107 (131)
T 2vyi_A 96 HVEAVAYYKKAL 107 (131)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444443333
No 140
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.28 E-value=1.4e-05 Score=65.70 Aligned_cols=99 Identities=13% Similarity=0.079 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007193 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (613)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 170 (613)
+...|..+...+...|++++|...++...+.. +.+..++..+...+...|++++|.+.|++..+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 34455555566666666666666666665443 3345555556666666666666666666655542 234555555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 007193 171 GCAKAGQVAKAFGAYGIMRSK 191 (613)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~ 191 (613)
.+.+.|++++|...|++....
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 666666666666666655543
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.27 E-value=5.4e-06 Score=72.53 Aligned_cols=118 Identities=8% Similarity=0.070 Sum_probs=60.8
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHH-HHcCCCh--H
Q 007193 36 IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSV-CASSKDS--E 109 (613)
Q Consensus 36 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~-~~~~~~~--~ 109 (613)
...|++++|+..|++..+.. |.+...+..++..+...|++++|...|++.. +.+...|..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 45677777777777776665 4444555555555555555555555555432 2344444444444 4455555 5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 007193 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (613)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (613)
+|...++.+.+.. +.+...+..+...|...|++++|...|++..+.
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 5555555555443 333444555555555555555555555555544
No 142
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.26 E-value=8.8e-06 Score=72.78 Aligned_cols=24 Identities=8% Similarity=-0.062 Sum_probs=11.4
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHH
Q 007193 413 SILLVACERKDDVEVGLMLLSQAK 436 (613)
Q Consensus 413 ~~ll~a~~~~g~~~~a~~~~~~m~ 436 (613)
..+...+...|++++|.+.+++..
T Consensus 151 ~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 151 RGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHH
Confidence 334444444555555555554443
No 143
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.24 E-value=6.4e-06 Score=73.72 Aligned_cols=98 Identities=18% Similarity=0.069 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCC--
Q 007193 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEA----GLK-ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIEP-- 160 (613)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-- 160 (613)
...++.+...+...|++++|...++...+. +.. ....++..+...+...|++++|.+.+++..+. +-.+
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 334444444555555555555555544431 111 11234444555555555555555555544321 1000
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 161 NVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (613)
Q Consensus 161 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (613)
...++..+...+...|++++|...+++..
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 12234444455555555555555555443
No 144
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.23 E-value=4.1e-05 Score=71.26 Aligned_cols=197 Identities=10% Similarity=0.042 Sum_probs=130.4
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------
Q 007193 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIA-------INCCSQTGDWEFACSVYDDMTKKGVIPD--------------- 303 (613)
Q Consensus 246 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~a~~~~~~m~~~g~~p~--------------- 303 (613)
..++...|.+.|.++...+ +.....|..+ ...+...++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 4677777777777777765 5556667666 3444444444444444433332 1111
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---
Q 007193 304 -------EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT--- 373 (613)
Q Consensus 304 -------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--- 373 (613)
..........+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+..... |+
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~---~d~~~ 169 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW---PDKFL 169 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC---SCHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc---CCccc
Confidence 1223345566777888999988888776654 33335566666888999999999999866542 32
Q ss_pred -HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007193 374 -VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN--TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450 (613)
Q Consensus 374 -~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 450 (613)
...+..+-.++.+.|++++|+..|++.......|. .........++.+.|+.++|...|+++... .|+...+..|
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~aL 247 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHH
Confidence 23567788889999999999999998875433254 235556667888999999999999999874 4655555555
Q ss_pred HH
Q 007193 451 IG 452 (613)
Q Consensus 451 i~ 452 (613)
.+
T Consensus 248 ~~ 249 (282)
T 4f3v_A 248 KD 249 (282)
T ss_dssp HC
T ss_pred hC
Confidence 43
No 145
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.20 E-value=8.3e-05 Score=59.26 Aligned_cols=98 Identities=13% Similarity=0.059 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007193 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (613)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 171 (613)
+..+..+...+...|++++|...++...... +.+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3445555666666666777776666666553 3455666666666666666666666666665543 2345556666666
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 007193 172 CAKAGQVAKAFGAYGIMRSK 191 (613)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~ 191 (613)
+...|++++|...|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 66666666666666666554
No 146
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.18 E-value=8.3e-06 Score=68.98 Aligned_cols=52 Identities=13% Similarity=0.242 Sum_probs=19.3
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 243 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295 (613)
Q Consensus 243 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 295 (613)
.+.+.|++++|...|+.....+ +.+...|..+..+|...|++++|+..|++.
T Consensus 30 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 81 (148)
T 2vgx_A 30 NQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYG 81 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3333333333333333333332 223333333333333333333333333333
No 147
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.18 E-value=2.4e-05 Score=66.20 Aligned_cols=60 Identities=13% Similarity=0.032 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (613)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 296 (613)
.|..+..+|...|++++|...|++..+.+ +.++..|..+..+|.+.|++++|...|++..
T Consensus 72 ~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al 131 (151)
T 3gyz_A 72 YIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKAPLKAKECFELVI 131 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333333333344444444443333332 2223333333333333344444433333333
No 148
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.15 E-value=5.2e-05 Score=61.77 Aligned_cols=97 Identities=12% Similarity=0.060 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007193 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (613)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (613)
..|..+...+.+.|++++|...|+...+.. +.+...|..+..++.+.|++++|...|++..+.. +.+...|..+...+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 455566666777777777777777776654 4456677777777777777777777777776653 33566677777777
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 007193 173 AKAGQVAKAFGAYGIMRSK 191 (613)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~ 191 (613)
...|++++|...|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 7777777777777766653
No 149
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.15 E-value=6.4e-05 Score=73.39 Aligned_cols=87 Identities=10% Similarity=-0.093 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHH
Q 007193 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (613)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (613)
.+|..+..+|.+.|++++|+..+++..+.... +...+..+..+|...|++++|...|+...+.. +.+...+..+...+
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 45555555566666666666666655554322 44555555555555566666665555555543 33444555555555
Q ss_pred HhcCCHHHH
Q 007193 350 SNAKNWQKA 358 (613)
Q Consensus 350 ~~~g~~~~A 358 (613)
.+.|+.++|
T Consensus 275 ~~~~~~~~a 283 (336)
T 1p5q_A 275 QRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555555
No 150
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.14 E-value=1e-05 Score=68.43 Aligned_cols=97 Identities=13% Similarity=0.046 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007193 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (613)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 171 (613)
...+..+...+.+.|++++|...|+...... +.+...|..+..+|...|++++|.+.|++..... +.+...+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 3445555556666666666666666666553 4455666666666666666666666666665543 3345556666666
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 007193 172 CAKAGQVAKAFGAYGIMRS 190 (613)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~ 190 (613)
|...|++++|...|++..+
T Consensus 99 ~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666554
No 151
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.13 E-value=4.7e-05 Score=74.36 Aligned_cols=145 Identities=12% Similarity=0.037 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHH
Q 007193 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348 (613)
Q Consensus 269 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 348 (613)
...+..+...|.+.|++++|+..|++.......... -..+.+..+- +.....+..+..+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------------~~~~~~~~~~--------~~~~~~~~nla~~ 205 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS-------------FSNEEAQKAQ--------ALRLASHLNLAMC 205 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC-------------CCSHHHHHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcccc-------------CChHHHHHHH--------HHHHHHHHHHHHH
Confidence 345666777777777777777777776654322110 0001111000 0113566667777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCCHHH
Q 007193 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEV 427 (613)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~ 427 (613)
|.+.|++++|...|++..+.. +.+...|..+..+|...|++++|+..|++..+. .| +...+..+..++...|+.++
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777776653 345667777777777777777777777777664 34 45666677777777777777
Q ss_pred H-HHHHHHHHH
Q 007193 428 G-LMLLSQAKE 437 (613)
Q Consensus 428 a-~~~~~~m~~ 437 (613)
+ ...++.|..
T Consensus 283 a~~~~~~~~~~ 293 (336)
T 1p5q_A 283 REKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 7 445565553
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.13 E-value=0.00012 Score=58.29 Aligned_cols=12 Identities=33% Similarity=0.686 Sum_probs=4.3
Q ss_pred cCChHHHHHHHH
Q 007193 247 AGQVDRAREVYK 258 (613)
Q Consensus 247 ~g~~~~A~~~~~ 258 (613)
.|++++|...|+
T Consensus 17 ~~~~~~A~~~~~ 28 (118)
T 1elw_A 17 VGNIDDALQCYS 28 (118)
T ss_dssp TTCHHHHHHHHH
T ss_pred cccHHHHHHHHH
Confidence 333333333333
No 153
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.12 E-value=4.7e-05 Score=60.14 Aligned_cols=99 Identities=9% Similarity=0.065 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC--CHHHHHHH
Q 007193 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP--NVHTYGAL 168 (613)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~l 168 (613)
+...|..+...+...|++++|...++...+.. +.+...+..+...+...|++++|.+.|++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 34455555566666666666666666666543 3345555566666666666666666666665542 22 35555556
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHhC
Q 007193 169 IDGCAKA-GQVAKAFGAYGIMRSK 191 (613)
Q Consensus 169 i~~~~~~-g~~~~A~~~~~~m~~~ 191 (613)
...+.+. |++++|.+.|++....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 6666666 6666666666665544
No 154
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.11 E-value=0.0053 Score=58.78 Aligned_cols=188 Identities=4% Similarity=-0.056 Sum_probs=105.7
Q ss_pred cCCChH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007193 104 SSKDSE-GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK----------VDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (613)
Q Consensus 104 ~~~~~~-~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (613)
+.|.++ +|+.+++.+...+ +-+..+|+.--..+...+. +++++.+++.+.... +.+..+|+.-...+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344443 6677777776543 3334445443333332222 456666666666543 44666666666666
Q ss_pred HhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhc--
Q 007193 173 AKAG--QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA-VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA-- 247 (613)
Q Consensus 173 ~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~-- 247 (613)
.+.+ .+++++.+++++.+.. +-|-.+|+.-.-.+...|. .+++++.++.+.... +.|...|+.....+.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~---p~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN---FSNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHHSC
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHhhh
Confidence 6666 3667777777776653 3455666655555555565 466777766666531 34555565554444443
Q ss_pred ------------CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHC
Q 007193 248 ------------GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT-----------GDWEFACSVYDDMTKK 298 (613)
Q Consensus 248 ------------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~ 298 (613)
+.++++.+.+......+ +.|..+|+-+-..+.+. +.++++++.++++.+.
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 33566777776666655 55666666554444443 2355666666666654
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.10 E-value=7.4e-05 Score=60.85 Aligned_cols=60 Identities=15% Similarity=0.088 Sum_probs=23.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 007193 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (613)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 400 (613)
..+..+..+|.+.|++++|...|++..+.. +.+...|..+..++...|++++|++.|++.
T Consensus 39 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 39 RGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAA 98 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 333333334444444444444444333321 122333333444444444444444444433
No 156
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.06 E-value=1.2e-05 Score=71.93 Aligned_cols=137 Identities=9% Similarity=-0.076 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHHhCCC---CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH----------------HHHHHHH
Q 007193 74 QKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC----------------KLYTTLI 134 (613)
Q Consensus 74 ~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~----------------~~~~~li 134 (613)
.+.+++|.+.++.... .....+..+...+...|++++|...|+...+.. +.+. .++..+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la 95 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLA 95 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHH
Confidence 3455555555543221 133456666667777788888888887777642 1111 4455555
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH
Q 007193 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213 (613)
Q Consensus 135 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 213 (613)
.+|.+.|++++|...+++..+.. +.+...+..+..+|...|++++|...|++..+.. +-+...+..+..++...++.
T Consensus 96 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~ 172 (198)
T 2fbn_A 96 TCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEA 172 (198)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHH
Confidence 55555556666655555555442 2344555555555555555555555555554431 22333444444444443333
No 157
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.06 E-value=5.1e-05 Score=62.06 Aligned_cols=104 Identities=11% Similarity=0.186 Sum_probs=65.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC--CCCC----HHHHHH
Q 007193 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG--LCPN----TITYSI 414 (613)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~----~~t~~~ 414 (613)
.+..+...+.+.|++++|...|++..+.. +.+...|+.+..+|.+.|++++|++.+++..+.. ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45556666777777777777777766543 3346667777777777777777777777665421 1111 134555
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 007193 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447 (613)
Q Consensus 415 ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 447 (613)
+..++...|++++|++.|++.++. .||..+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 666777777777777777777653 3554443
No 158
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.05 E-value=6.9e-05 Score=61.27 Aligned_cols=105 Identities=13% Similarity=0.076 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC--CCCC----HHHHH
Q 007193 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG--IEPN----VHTYG 166 (613)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~----~~~~~ 166 (613)
..+..+...+.+.|++++|+..|+...+.. +.+...|..+..+|.+.|++++|++.|++..+.. ..++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345566677777778888888777777664 4456777777777777788877777777765431 0111 13455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007193 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200 (613)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 200 (613)
.+...+...|++++|++.|++.... .||....
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 6666677777777777777776653 4454433
No 159
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.05 E-value=5.2e-05 Score=63.43 Aligned_cols=97 Identities=8% Similarity=-0.023 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007193 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (613)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (613)
..+..+...+.+.|++++|...|+...... +.+...|..+..+|.+.|++++|...|++..... +.+...+..+..+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 344445555666667777777776666554 4456666666666666677777766666666553 33455566666666
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 007193 173 AKAGQVAKAFGAYGIMRSK 191 (613)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~ 191 (613)
...|++++|...|++..+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666543
No 160
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.04 E-value=4.6e-05 Score=62.17 Aligned_cols=108 Identities=13% Similarity=0.116 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC--CCC----HHHHH
Q 007193 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI--EPN----VHTYG 166 (613)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~----~~~~~ 166 (613)
..|..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|...+++...... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456666677777777888887777777654 44666777777777777777777777777665421 111 55666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007193 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203 (613)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 203 (613)
.+...|.+.|++++|...|++..+. .|+......+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l 118 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC 118 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 6777777777777777777777664 3454444433
No 161
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.03 E-value=7.3e-05 Score=62.49 Aligned_cols=95 Identities=16% Similarity=0.122 Sum_probs=50.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007193 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (613)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 316 (613)
+..+...+.+.|++++|...|+.....+ +.+...|..+..+|.+.|++++|+..|+......+. +...+..+..++..
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 3334445555555555555555555543 344555555555555555555555555555554332 33444555555555
Q ss_pred cCCHHHHHHHHHHHHHC
Q 007193 317 AGKVEAAFEILQEAKNQ 333 (613)
Q Consensus 317 ~g~~~~a~~~~~~~~~~ 333 (613)
.|++++|...|+...+.
T Consensus 99 ~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 99 LGDLDGAESGFYSARAL 115 (142)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 55555555555555443
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.03 E-value=0.00012 Score=60.34 Aligned_cols=99 Identities=9% Similarity=-0.055 Sum_probs=57.1
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007193 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (613)
Q Consensus 90 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 169 (613)
.+...|..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|...|++..+.. +.+...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 345555555666666666666666666655543 3345556666666666666666666666655543 23455555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 007193 170 DGCAKAGQVAKAFGAYGIMRS 190 (613)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~ 190 (613)
..|...|++++|...|++..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 666666666666666655543
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.99 E-value=0.00014 Score=60.04 Aligned_cols=97 Identities=13% Similarity=-0.077 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007193 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (613)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 313 (613)
...+..+...+...|++++|...|+.....+ +.+...|..+...+...|++++|...+++..+.... +...+..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHHH
Confidence 4444455555555555555555555554443 334445555555555555555555555555544322 34445555555
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 007193 314 AGHAGKVEAAFEILQEAKN 332 (613)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~ 332 (613)
+...|++++|...|....+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555555443
No 164
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.99 E-value=8.7e-05 Score=58.49 Aligned_cols=98 Identities=11% Similarity=0.010 Sum_probs=58.0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC--CHHHHHHHH
Q 007193 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP--NTITYSILL 416 (613)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll 416 (613)
...+..+...+.+.|++++|...|++..+.. +.+...|..+...+...|++++|++.|++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 3445555556666666666666666655432 2345556666666666666666666666665532 22 355566666
Q ss_pred HHHhhc-CCHHHHHHHHHHHHHc
Q 007193 417 VACERK-DDVEVGLMLLSQAKED 438 (613)
Q Consensus 417 ~a~~~~-g~~~~a~~~~~~m~~~ 438 (613)
..+... |++++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 666666 6666666666666653
No 165
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.98 E-value=0.00018 Score=61.68 Aligned_cols=99 Identities=18% Similarity=0.065 Sum_probs=81.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007193 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417 (613)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 417 (613)
+...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..|++..+.. +-+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45667778888888999999999998887754 3467888889999999999999999999988753 335778888889
Q ss_pred HHhhcCCHHHHHHHHHHHHHc
Q 007193 418 ACERKDDVEVGLMLLSQAKED 438 (613)
Q Consensus 418 a~~~~g~~~~a~~~~~~m~~~ 438 (613)
++...|++++|...|++.++.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999988863
No 166
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.96 E-value=0.00016 Score=62.02 Aligned_cols=99 Identities=10% Similarity=-0.023 Sum_probs=79.9
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007193 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (613)
Q Consensus 91 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 170 (613)
+...|..+...+.+.|++++|+..|+...+.. +.+...|..+..+|.+.|++++|+..|++..+.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45567777788888888888888888888765 4567788888888888888888888888887764 446778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 007193 171 GCAKAGQVAKAFGAYGIMRSK 191 (613)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~ 191 (613)
.|.+.|++++|...|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 888888888888888888764
No 167
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.95 E-value=0.0001 Score=74.76 Aligned_cols=147 Identities=10% Similarity=-0.044 Sum_probs=71.5
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcC
Q 007193 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASS 105 (613)
Q Consensus 26 ~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 105 (613)
...+.-...+++.|++++|++.|.++.+........... ........+..++ ++..+...|...
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~--------------al~~l~~~y~~~ 68 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAG--ASVDDKRRNEQET--------------SILELGQLYVTM 68 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSS--SSBCSHHHHHHHH--------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHH--HHHHHHHhhhHHH--------------HHHHHHHHHHHC
Confidence 334555677889999999999999998865321111000 0000001111122 245566777777
Q ss_pred CChHHHHHHHHHHHHcC-CCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhc
Q 007193 106 KDSEGAFQVLRLVQEAG-LKADC----KLYTTLITTCAKSGKVDAMFEVFHEMVN----AGIEPN-VHTYGALIDGCAKA 175 (613)
Q Consensus 106 ~~~~~A~~~~~~m~~~g-~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~~~-~~~~~~li~~~~~~ 175 (613)
|++++|.+.+..+...- ..++. .+.+.+-..+...|+.++|.+++..... .+..+. ..++..+...|...
T Consensus 69 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 148 (434)
T 4b4t_Q 69 GAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQK 148 (434)
T ss_dssp TCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHc
Confidence 77777777776655321 01111 1122222222334555666555554432 111111 23344445555555
Q ss_pred CCHHHHHHHHHHH
Q 007193 176 GQVAKAFGAYGIM 188 (613)
Q Consensus 176 g~~~~A~~~~~~m 188 (613)
|++++|..++++.
T Consensus 149 g~~~~A~~~l~~~ 161 (434)
T 4b4t_Q 149 KQYKDSLALINDL 161 (434)
T ss_dssp TCHHHHHHHHHHH
T ss_pred cChHHHHHHHHHH
Confidence 5555555555444
No 168
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.94 E-value=0.00036 Score=58.22 Aligned_cols=95 Identities=14% Similarity=0.020 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHH
Q 007193 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD----RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238 (613)
Q Consensus 163 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~ 238 (613)
..+..+...+...|++++|...|++..+. .|+ ...+..+...+...|++++|...+++.... .+.+...+.
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~ 103 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK---DGGDVKALY 103 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TSCCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---CccCHHHHH
Confidence 33444444444444444444444444432 222 233333344444444444444444443321 011233333
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 007193 239 ALMKACANAGQVDRAREVYKMIHK 262 (613)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~ 262 (613)
.+..++...|++++|...|++..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 169
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.94 E-value=0.00017 Score=64.26 Aligned_cols=61 Identities=20% Similarity=0.032 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007193 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (613)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (613)
+|..+..+|.+.|++++|+..++...+.... +...+..+..+|...|++++|...|+...+
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3444444444444444444444444443211 333444444444444444444444444443
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.93 E-value=0.00039 Score=58.02 Aligned_cols=98 Identities=8% Similarity=-0.038 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHH
Q 007193 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271 (613)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 271 (613)
+...+..+...+...|++++|.+.|++.... .|+ ...+..+...|...|++++|...+++..+.. +.+...
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 101 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL----DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA 101 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH----cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence 4556666666777777777777777776642 344 4555566666666777777777776666553 334556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 272 YTIAINCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 272 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (613)
+..+...+...|++++|...|++..+.
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 666666666666776666666666654
No 171
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.92 E-value=0.00011 Score=59.43 Aligned_cols=95 Identities=9% Similarity=-0.070 Sum_probs=61.6
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007193 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (613)
Q Consensus 95 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (613)
+..+...+.+.|++++|...|+...+.. +.+...|..+..++...|++++|+..|++..+.. +.+...+..+...|.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 4444555666777777777777766654 4456666666677777777777777777766653 3355566666667777
Q ss_pred cCCHHHHHHHHHHHHhC
Q 007193 175 AGQVAKAFGAYGIMRSK 191 (613)
Q Consensus 175 ~g~~~~A~~~~~~m~~~ 191 (613)
.|++++|+..|++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777766653
No 172
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.90 E-value=0.00013 Score=59.39 Aligned_cols=25 Identities=12% Similarity=0.381 Sum_probs=10.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 342 YSSLMGACSNAKNWQKALELYEHMK 366 (613)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~ 366 (613)
+..+...|.+.|++++|...|++..
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~ 106 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSL 106 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3333333444444444444444333
No 173
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.82 E-value=0.001 Score=67.21 Aligned_cols=165 Identities=9% Similarity=0.009 Sum_probs=84.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CcCHHh
Q 007193 272 YTIAINCCSQTGDWEFACSVYDDMTKKG-VIPDEV----FLSALIDFAGHAGKVEAAFEILQEAKNQ----GI-SVGIIS 341 (613)
Q Consensus 272 ~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~----~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~ 341 (613)
+..+...|.+.|++++|.+.+..+...- ..++.. +.+.+-..+...|+.+.|..++...... +. ..-..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4455555666666666666555543310 011111 1111222222345566666666554321 11 112345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhC--CCC-C-C--HH
Q 007193 342 YSSLMGACSNAKNWQKALELYEHMKSI----KLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSL--GLC-P-N--TI 410 (613)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~-p-~--~~ 410 (613)
+..+...|...|++++|..++++.... +-.+. ..++..++..|...|++++|..++++.... .+. | . ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 566666677777777777666655431 11111 345666667777777777777777665431 111 1 1 23
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHH
Q 007193 411 TYSILLVACERKDDVEVGLMLLSQAK 436 (613)
Q Consensus 411 t~~~ll~a~~~~g~~~~a~~~~~~m~ 436 (613)
.+..+...+...|++++|...|.+..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34455556667777777777666554
No 174
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.81 E-value=0.00021 Score=73.27 Aligned_cols=116 Identities=12% Similarity=-0.028 Sum_probs=55.3
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007193 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324 (613)
Q Consensus 245 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 324 (613)
.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++++|++.+++..+.... +...+..+..+|...|++++|.
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHH
Confidence 34455555555555554443 333455555555555555555555555555554322 3445555555555555555555
Q ss_pred HHHHHHHHCCCCcCHHhHHHHHHH--HHhcCCHHHHHHHHH
Q 007193 325 EILQEAKNQGISVGIISYSSLMGA--CSNAKNWQKALELYE 363 (613)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 363 (613)
..+++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 95 ~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555554442 1222233333333 455555555555555
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.81 E-value=0.00021 Score=57.71 Aligned_cols=88 Identities=10% Similarity=-0.008 Sum_probs=40.1
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 007193 242 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321 (613)
Q Consensus 242 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 321 (613)
..+.+.|++++|...|++..+.+ +.+...|..+...+...|++++|+..|++..+..+. +...+..+..++...|+++
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~~~ 102 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNAN 102 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHH
Confidence 34444445555555554444443 334444444444444445555555444444443322 3334444444444444444
Q ss_pred HHHHHHHHHH
Q 007193 322 AAFEILQEAK 331 (613)
Q Consensus 322 ~a~~~~~~~~ 331 (613)
+|...++...
T Consensus 103 ~A~~~~~~al 112 (121)
T 1hxi_A 103 AALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.71 E-value=0.00072 Score=54.90 Aligned_cols=92 Identities=10% Similarity=-0.049 Sum_probs=50.5
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHH
Q 007193 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADC---KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN---VHTYGALIDG 171 (613)
Q Consensus 98 li~~~~~~~~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~ 171 (613)
+...+...|++++|...|+.+.+.. +.+. ..+..+...+.+.|++++|...|++..+.. +.+ ..++..+...
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHH
Confidence 3444555666666666666665543 1222 345555556666666666666666655542 112 3445555556
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 007193 172 CAKAGQVAKAFGAYGIMRSK 191 (613)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~ 191 (613)
+.+.|++++|...|++....
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666665544
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.70 E-value=0.00028 Score=59.80 Aligned_cols=97 Identities=13% Similarity=0.043 Sum_probs=55.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHhC----CCCC-CHH
Q 007193 341 SYSSLMGACSNAKNWQKALELYEHMKSI----KLKP-TVSTMNALITALCDGDQLPKTMEVLSDMKSL----GLCP-NTI 410 (613)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~ 410 (613)
++..+...|...|++++|...+++..+. +-.+ ....+..+...+...|++++|.+.+++..+. +..+ ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4455555555666666666666554321 1000 1334555666667777777777777665431 1111 124
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 411 TYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 411 t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
++..+...+...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456666777788888888888777654
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.69 E-value=0.0016 Score=52.83 Aligned_cols=62 Identities=18% Similarity=0.048 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007193 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD--EVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (613)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (613)
.+..+...+.+.|++++|...|+......+... ...+..+..++...|++++|...|+.+.+
T Consensus 41 ~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 41 ALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333344444444444444444444443321100 22333333444444444444444444433
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.68 E-value=0.00029 Score=59.72 Aligned_cols=95 Identities=16% Similarity=0.031 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HH
Q 007193 236 TIGALMKACANAGQVDRAREVYKMIHKYNIK-GT----PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI-PD----EV 305 (613)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~ 305 (613)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|.+.+++....... ++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444444555555555555555544332100 00 124455555555556666665555554331000 01 22
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 306 FLSALIDFAGHAGKVEAAFEILQEA 330 (613)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~~ 330 (613)
.+..+...+...|++++|...+.+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a 115 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKH 115 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3334444444555555555554443
No 180
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.68 E-value=0.00035 Score=71.68 Aligned_cols=119 Identities=12% Similarity=0.054 Sum_probs=79.0
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 007193 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179 (613)
Q Consensus 100 ~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 179 (613)
..+.+.|++++|.+.+++..+.. +.+..+|..+..+|.+.|++++|.+.+++..+.. +.+..+|..+..+|.+.|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 34556777888888887777663 4457777778888888888888888888877764 345677777777888888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHH--HHccCCHHHHHHHHH
Q 007193 180 KAFGAYGIMRSKNVKPDRVVFNALITA--CGQSGAVDRAFDVLA 221 (613)
Q Consensus 180 ~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~ 221 (613)
+|.+.|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888776642 1123344444444 666777777777776
No 181
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.61 E-value=0.00065 Score=58.03 Aligned_cols=62 Identities=10% Similarity=-0.118 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 375 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
..|..+..+|.+.|++++|+..+++..+.. +.+...|..+..++...|++++|...+++.++
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 344445555555555555555555544421 22344455555555555555555555555554
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.61 E-value=6.3e-05 Score=60.43 Aligned_cols=85 Identities=14% Similarity=-0.018 Sum_probs=55.3
Q ss_pred cCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 007193 352 AKNWQKALELYEHMKSIK--LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429 (613)
Q Consensus 352 ~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 429 (613)
.|++++|...|++..+.+ -+.+...|..+...|...|++++|++.|++..+.. +-+...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 466777777777776642 11234566677777777777777777777776642 224566667777777778888888
Q ss_pred HHHHHHHH
Q 007193 430 MLLSQAKE 437 (613)
Q Consensus 430 ~~~~~m~~ 437 (613)
..+++..+
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777765
No 183
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.60 E-value=0.00097 Score=68.02 Aligned_cols=121 Identities=11% Similarity=-0.018 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007193 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGT--------------PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301 (613)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 301 (613)
.+..+...|.+.|++++|...|++..+..-... ..+|..+..+|.+.|++++|+..+++..+....
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 344444455555555555555555544321110 234444444455555555555555544443322
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHH
Q 007193 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358 (613)
Q Consensus 302 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 358 (613)
+...|..+..+|...|++++|...|+...+.. +.+...+..+..++.+.++.+++
T Consensus 350 -~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 350 -NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444432 22333444444444444444333
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.59 E-value=0.00076 Score=57.59 Aligned_cols=98 Identities=13% Similarity=0.074 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHc-------CC----------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 007193 93 STFNMLMSVCASSKDSEGAFQVLRLVQEA-------GL----------KADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155 (613)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~-------g~----------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (613)
..+......+.+.|++++|...|...... .- +.+...|..+..+|.+.|++++|...++...+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34556667777788888888888777654 00 11234555666666666666666666666655
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007193 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (613)
Q Consensus 156 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (613)
.. +.+...|..+..+|...|++++|...|++....
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 43 334556666666666666666666666666554
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.59 E-value=0.00074 Score=66.63 Aligned_cols=120 Identities=11% Similarity=0.026 Sum_probs=61.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc---------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007193 237 IGALMKACANAGQVDRAREVYKMIHKY---------------NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301 (613)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 301 (613)
+..+...+.+.|++++|...|++..+. .-+.+..+|..+..+|.+.|++++|++.+++..+....
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 334444555555555555555554431 00112345555666666666666666666666554322
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHH
Q 007193 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358 (613)
Q Consensus 302 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 358 (613)
+...+..+..+|...|++++|...|++..+.. +.+...+..+...+.+.++.+++
T Consensus 306 -~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 306 -NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666666666666666555543 22444444454444444444443
No 186
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.57 E-value=0.001 Score=67.83 Aligned_cols=97 Identities=8% Similarity=-0.048 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC---------------HHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 007193 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD---------------CKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (613)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~---------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (613)
...|..+...+.+.|++++|...|+...+.. +.+ ...|..+..+|.+.|++++|+..|++..+.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3455566666777777777777777666542 111 234444444444444444444444444433
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007193 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190 (613)
Q Consensus 157 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 190 (613)
. +.+...|..+..+|...|++++|+..|++..+
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2 22333444444444444444444444444443
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.53 E-value=0.00083 Score=66.27 Aligned_cols=137 Identities=9% Similarity=-0.061 Sum_probs=70.5
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007193 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (613)
Q Consensus 94 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (613)
.|..+...+.+.|++++|+..|+...+.- ++. ......+++.+ .. +.+..+|..+..+|.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~~~-------~~-~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADGAK-------LQ-PVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHHGG-------GH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHHHH-------HH-HHHHHHHHHHHHHHH
Confidence 35556666777777777777777666410 000 00000000000 10 123445556666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 007193 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253 (613)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A 253 (613)
+.|++++|+..+++..+.. +.+...|..+..+|...|++++|.+.|++..... +.+...+..+...+...++.+++
T Consensus 285 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~---P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA---PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666542 2245555566666666666666666666655421 22344555555555555555554
Q ss_pred H
Q 007193 254 R 254 (613)
Q Consensus 254 ~ 254 (613)
.
T Consensus 361 ~ 361 (370)
T 1ihg_A 361 E 361 (370)
T ss_dssp H
T ss_pred H
Confidence 4
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.53 E-value=0.00018 Score=57.73 Aligned_cols=85 Identities=12% Similarity=-0.079 Sum_probs=43.0
Q ss_pred CCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007193 105 SKDSEGAFQVLRLVQEAG--LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182 (613)
Q Consensus 105 ~~~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 182 (613)
.|++++|+..|+...+.+ -+.+...+..+...|...|++++|.+.|++..+.. +.+..++..+..++.+.|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 345555555555555432 12223445555555555566666666665555443 224455555555555566666666
Q ss_pred HHHHHHHh
Q 007193 183 GAYGIMRS 190 (613)
Q Consensus 183 ~~~~~m~~ 190 (613)
..|++...
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65555544
No 189
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.45 E-value=0.012 Score=61.36 Aligned_cols=172 Identities=6% Similarity=-0.055 Sum_probs=114.3
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007193 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK----------VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (613)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 176 (613)
..++|++.++.+.+.+ +-+..+|+.--.++...|+ ++++.+.++.+.+.. +.+..+|+.-...+.+.+
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 3456788888877764 4455666666666666665 778888888877664 456777777777777777
Q ss_pred --CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhc------
Q 007193 177 --QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG-AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA------ 247 (613)
Q Consensus 177 --~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~------ 247 (613)
+++++++.++++.+.. +-|..+|+.-...+.+.| ..+++.+.++++.+. -+.|...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~---~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---NFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT---TCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH---CCCCccHHHHHHHHHHhhcccccc
Confidence 6688888888887764 446677777666666677 777777777777653 244566666665555543
Q ss_pred --------CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 007193 248 --------GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285 (613)
Q Consensus 248 --------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 285 (613)
+.++++.+.+++....+ +.+..+|+-+-..+.+.++.
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCC
T ss_pred cccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCc
Confidence 34566777776666654 45566676666666665553
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.36 E-value=0.00077 Score=65.66 Aligned_cols=147 Identities=17% Similarity=0.082 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007193 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (613)
Q Consensus 93 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (613)
..+..+...+.+.|++++|...|+...+. .|+... +...++.+++...+ . ...|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H-------HHHHHHHHHHH
Confidence 34556666777788888888888877764 233221 11112222222111 1 12566666677
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHH-HHhcCCh
Q 007193 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKA-CANAGQV 250 (613)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~~~ll~~-~~~~g~~ 250 (613)
.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|...|++.... .|+ ...+..+... ....+..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l----~p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY----APDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHH
Confidence 77777777777777766542 234566666777777777777777777766542 232 3333334333 2234455
Q ss_pred HHHHHHHHHHHhc
Q 007193 251 DRAREVYKMIHKY 263 (613)
Q Consensus 251 ~~A~~~~~~~~~~ 263 (613)
+.+..+|..+...
T Consensus 316 ~~a~~~~~~~l~~ 328 (338)
T 2if4_A 316 QKQKEMYKGIFKG 328 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHHhhCC
Confidence 6666666666543
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.35 E-value=0.00065 Score=66.23 Aligned_cols=145 Identities=10% Similarity=-0.010 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 007193 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350 (613)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 350 (613)
.+..+...+.+.|++++|...|.+..... |+... +...++.+++...+. ...|..+..+|.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 45556666667777777777777766542 32221 112222222222111 125566666667
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHH-HhhcCCHHHH
Q 007193 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI-TYSILLVA-CERKDDVEVG 428 (613)
Q Consensus 351 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a-~~~~g~~~~a 428 (613)
+.|++++|...+++..+.. +.+...|..+..+|...|++++|+..|++..+ +.|+.. .+..+... ....+..+.+
T Consensus 242 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777666543 23466666677777777777777777776654 234332 23322222 2234455666
Q ss_pred HHHHHHHHH
Q 007193 429 LMLLSQAKE 437 (613)
Q Consensus 429 ~~~~~~m~~ 437 (613)
...|..|..
T Consensus 319 ~~~~~~~l~ 327 (338)
T 2if4_A 319 KEMYKGIFK 327 (338)
T ss_dssp ---------
T ss_pred HHHHHHhhC
Confidence 666666654
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.28 E-value=0.0034 Score=52.59 Aligned_cols=94 Identities=11% Similarity=-0.044 Sum_probs=48.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCC-C-----CH-----HHHHHHHHHHHHcCChhHHHHHHHHHHHC-------
Q 007193 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLK-A-----DC-----KLYTTLITTCAKSGKVDAMFEVFHEMVNA------- 156 (613)
Q Consensus 95 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-~-----~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~------- 156 (613)
+......+.+.|++++|+..|+...+.... | +. ..|..+..++.+.|++++|+..+++.++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 344445566667777777777766654311 0 11 25555555555555555555555555443
Q ss_pred CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 157 GIEPNVHTY----GALIDGCAKAGQVAKAFGAYGIMR 189 (613)
Q Consensus 157 g~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~ 189 (613)
. +-+...| .....++...|++++|+..|++..
T Consensus 94 ~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 94 N-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp T-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred C-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 2 1123344 444455555555555555555443
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.28 E-value=0.0042 Score=52.05 Aligned_cols=92 Identities=9% Similarity=-0.065 Sum_probs=43.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCC------CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCC-
Q 007193 240 LMKACANAGQVDRAREVYKMIHKYNIKG------TP-----EVYTIAINCCSQTGDWEFACSVYDDMTKK-----GVIP- 302 (613)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~~~~~~~------~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~p- 302 (613)
....+.+.|++++|...|++..+..... +. ..|+.+..++.+.|++++|+..+++.++. .+.|
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd 96 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD 96 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc
Confidence 3344445555555555555544432110 11 25555555556666666666555555543 0122
Q ss_pred CHHHH----HHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 303 DEVFL----SALIDFAGHAGKVEAAFEILQEAK 331 (613)
Q Consensus 303 ~~~~~----~~li~~~~~~g~~~~a~~~~~~~~ 331 (613)
+...| .....++...|++++|+..|+...
T Consensus 97 ~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 97 EGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 22334 444445555555555555555443
No 194
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.28 E-value=0.018 Score=60.21 Aligned_cols=169 Identities=8% Similarity=-0.042 Sum_probs=105.3
Q ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-
Q 007193 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD----------WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG- 318 (613)
Q Consensus 250 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g- 318 (613)
-++|.+.++++...+ +.+..+|+.--..+...|+ ++++++.++.+.+..++ +..+|..-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 345677777776665 4455666655555555555 67777777777766554 5666666666666666
Q ss_pred -CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC---------
Q 007193 319 -KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK-NWQKALELYEHMKSIKLKPTVSTMNALITALCDG--------- 387 (613)
Q Consensus 319 -~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------- 387 (613)
+++++++.++.+.+.. +-+...|+.-...+.+.| .++++.+.++++.+.. +.|...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 5577777777777664 445666666666666666 6777777777766654 34566666655555442
Q ss_pred -----CChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCC
Q 007193 388 -----DQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDD 424 (613)
Q Consensus 388 -----g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~ 424 (613)
+.++++++.+++.... .| |...|...-..+.+.+.
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCC
T ss_pred ccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCC
Confidence 3456777777776663 34 45556665555555555
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.24 E-value=0.00035 Score=55.01 Aligned_cols=89 Identities=9% Similarity=-0.052 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-------HHH
Q 007193 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN-------VHT 164 (613)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-------~~~ 164 (613)
...|..+...+...|++++|...|+...+.. +.+...+..+..++.+.|++++|.+.|++..+. .|+ ...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHHH
Confidence 4455566666667777777777777666653 445666666666677777777777777766654 233 333
Q ss_pred HHHHHHHHHhcCCHHHHHH
Q 007193 165 YGALIDGCAKAGQVAKAFG 183 (613)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~ 183 (613)
+..+...+...|+.+.|..
T Consensus 81 ~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHHhHhhhHh
Confidence 4444444444444444433
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.24 E-value=0.01 Score=48.88 Aligned_cols=14 Identities=29% Similarity=0.416 Sum_probs=5.7
Q ss_pred CCHHHHHHHHHHHH
Q 007193 353 KNWQKALELYEHMK 366 (613)
Q Consensus 353 g~~~~A~~~~~~m~ 366 (613)
+++++|.+.|++..
T Consensus 75 ~d~~~A~~~~~~Aa 88 (138)
T 1klx_A 75 KDLRKAAQYYSKAC 88 (138)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH
Confidence 33444444444433
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.23 E-value=0.013 Score=48.22 Aligned_cols=110 Identities=12% Similarity=-0.033 Sum_probs=57.4
Q ss_pred ChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 007193 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH----AGKVEAAF 324 (613)
Q Consensus 249 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~ 324 (613)
++++|.+.|++..+.+ .+... +...|...+..++|.+.|++..+.| +...+..+...|.. .++.++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3455555555555544 22211 4444444455555555555555543 34444555555554 45566666
Q ss_pred HHHHHHHHCCCCcCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 007193 325 EILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIK 369 (613)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 369 (613)
..|+...+.| ++..+..|...|.. .++.++|...|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666655554 34455555555555 555666666666555543
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.18 E-value=0.004 Score=46.53 Aligned_cols=62 Identities=15% Similarity=0.192 Sum_probs=31.8
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 007193 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (613)
Q Consensus 94 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (613)
.|..+...+...|++++|...++...+.. +.+..++..+...+.+.|++++|.+.|++..+.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 44444455555555555555555555442 334444555555555555555555555555443
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.14 E-value=0.002 Score=65.78 Aligned_cols=124 Identities=7% Similarity=-0.014 Sum_probs=76.4
Q ss_pred HHhcCCHHHHHHHHHHHHHC-----C--CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CCC-HHHHHH
Q 007193 314 AGHAGKVEAAFEILQEAKNQ-----G--ISVGIISYSSLMGACSNAKNWQKALELYEHMKS-----IKL-KPT-VSTMNA 379 (613)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~-~~~-~~~~~~ 379 (613)
+...|++++|..++++..+. | .+....+++.|...|...|++++|..++++..+ .|. .|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567777777777766542 1 112244677777788888888888777776643 121 122 456777
Q ss_pred HHHHHHcCCChhHHHHHHHHHHh---CCCCCCH----HHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 380 LITALCDGDQLPKTMEVLSDMKS---LGLCPNT----ITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 380 li~~~~~~g~~~~A~~l~~~m~~---~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
|...|...|++++|..++++..+ .-+-||. .+...+-.++...+.+++|...+.++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888888777543 1122332 2333444555667777777777766654
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.13 E-value=0.002 Score=65.76 Aligned_cols=86 Identities=14% Similarity=0.059 Sum_probs=38.7
Q ss_pred HhcCChHHHHHHHHHHHhc---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCC-CC-HHHHHHH
Q 007193 245 ANAGQVDRAREVYKMIHKY---NIKG----TPEVYTIAINCCSQTGDWEFACSVYDDMTK-----KGVI-PD-EVFLSAL 310 (613)
Q Consensus 245 ~~~g~~~~A~~~~~~~~~~---~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~-p~-~~~~~~l 310 (613)
...|++++|..++++..+. -+.+ ...+++.|...|...|++++|..++++..+ .|.. |+ ..+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3455555555555544332 1111 123455555555555555555555554432 1111 11 1234444
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 007193 311 IDFAGHAGKVEAAFEILQEA 330 (613)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~~ 330 (613)
...|...|++++|..++++.
T Consensus 400 a~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 44555555555555544443
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.07 E-value=0.0037 Score=49.48 Aligned_cols=77 Identities=18% Similarity=0.078 Sum_probs=38.3
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (613)
Q Consensus 111 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (613)
|+..|+...+.. +.+...+..+...|...|++++|.+.|++..+.. +.+...|..+...|...|++++|...|++..
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444332 3344455555555555555555555555554432 2234445555555555555555555555544
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.05 E-value=0.0073 Score=45.05 Aligned_cols=62 Identities=21% Similarity=0.222 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (613)
.+..+...+...|++++|...|++..+.. +.+..++..+...+.+.|++++|...|++..+.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444444455555555555555544433 233444445555555555555555555554443
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.00 E-value=0.0053 Score=48.54 Aligned_cols=60 Identities=15% Similarity=0.059 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295 (613)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 295 (613)
..+..+...|...|++++|...|++..+.+ +.+...|..+...|...|++++|...|++.
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333444444444444444444444444332 223333444444444444444444444433
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.00 E-value=0.0031 Score=49.30 Aligned_cols=62 Identities=11% Similarity=0.081 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (613)
.+..+...+.+.|++++|...|++..+.. +.+...|..+..++.+.|++++|++.+++..+.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34444445555555555555555554443 334445555555555555555555555555543
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.90 E-value=0.0027 Score=53.08 Aligned_cols=98 Identities=9% Similarity=0.056 Sum_probs=60.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC----------hhHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 007193 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ----------LPKTMEVLSDMKSLGLCP-NTITYSILLVAC 419 (613)
Q Consensus 351 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~ 419 (613)
+.+.+++|.+.++...+.. +.+...|+.+..++...++ +++|+..|++.++. .| +...|..+-.+|
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHH
Confidence 3344555555555555433 2345555555555555444 34777777777663 44 455677777777
Q ss_pred hhc-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007193 420 ERK-----------DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453 (613)
Q Consensus 420 ~~~-----------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 453 (613)
... |++++|.+.|++.++ +.|+...|..-+.+
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 665 478888888888887 56776666655555
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.83 E-value=0.003 Score=52.82 Aligned_cols=59 Identities=8% Similarity=0.055 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007193 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA-----------GQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205 (613)
Q Consensus 144 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 205 (613)
++|+..|++.++.. +.+..+|..+..+|... |++++|+..|++..+. .|+...|...+.
T Consensus 63 ~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 63 QEAITKFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 45566666555543 22445555555555554 3666777777666654 455554444433
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.64 E-value=0.012 Score=45.19 Aligned_cols=64 Identities=14% Similarity=0.076 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007193 233 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (613)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 297 (613)
+...+..+...|.+.|++++|...|++..+.+ +.+...|..+..+|...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34455555556666666666666666655554 33445566666666666666666666655443
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.56 E-value=0.013 Score=45.02 Aligned_cols=62 Identities=11% Similarity=0.099 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 007193 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154 (613)
Q Consensus 92 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 154 (613)
...|..+...+.+.|++++|...|+...+.. +.+...|..+..+|...|++++|.+.|++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444555555555555555544443 2233444444455555555555555444443
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.56 E-value=0.098 Score=50.30 Aligned_cols=74 Identities=15% Similarity=0.125 Sum_probs=60.8
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007193 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201 (613)
Q Consensus 124 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 201 (613)
+.+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++.... .|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 6678888888777777899999999999988874 78777878888888899999999999888876 56666664
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.41 E-value=0.052 Score=52.20 Aligned_cols=63 Identities=10% Similarity=-0.055 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 373 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
+..+|..+...+...|++++|...++++...+ |+...|..+-..+.-.|++++|...+++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44444444444444455555555555555432 4444444444445555555555555555544
No 211
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.90 E-value=0.14 Score=56.13 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=28.2
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (613)
Q Consensus 137 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (613)
....|++++|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 34566666666654332 245566666666666666666666666554
No 212
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.72 E-value=0.42 Score=52.34 Aligned_cols=154 Identities=14% Similarity=0.062 Sum_probs=96.6
Q ss_pred HHHcCCChHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 007193 101 VCASSKDSEGAFQ-VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179 (613)
Q Consensus 101 ~~~~~~~~~~A~~-~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 179 (613)
.....+++++|.+ ++.. ++ +......++..+.+.|..++|.++.+.-. .-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~-----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN-----VE-GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG-----CC-CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhc-----CC-chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHH
Confidence 3445677777766 4411 11 12233667777888888888876653211 1133456788899
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007193 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259 (613)
Q Consensus 180 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 259 (613)
.|+++.+.+ .+...|..+...+.+.++++.|.+.|.++.. +..+...|...|+.+...++-+.
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----------~~~l~~l~~~~~~~~~~~~~~~~ 732 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-----------LESLFLLHSSFNNKEGLVTLAKD 732 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----------hhhhHHHHHHcCCHHHHHHHHHH
Confidence 888876544 3567888899999999999999998887642 34455556667777766665555
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295 (613)
Q Consensus 260 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 295 (613)
....| -++.-...|.+.|++++|++++.++
T Consensus 733 a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 733 AETTG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHcC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 55544 1344444455666666666665543
No 213
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.65 E-value=0.13 Score=42.37 Aligned_cols=96 Identities=16% Similarity=0.083 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC---ChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhhcCCHHHH
Q 007193 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGD---QLPKTMEVLSDMKSLGLCP--NTITYSILLVACERKDDVEVG 428 (613)
Q Consensus 354 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a 428 (613)
.+..+.+-|.+..+.+ .++..+...+..++++.+ +.++++.+|++..+.. .| +...+-.+.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 3456666677666655 378888888888999988 5669999999988764 35 244455566788999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH
Q 007193 429 LMLLSQAKEDGVIPNLVMFKCIIGM 453 (613)
Q Consensus 429 ~~~~~~m~~~g~~p~~~~~~~li~~ 453 (613)
+++++.+++ ++|+..-...+...
T Consensus 91 ~~y~~~lL~--ieP~n~QA~~Lk~~ 113 (152)
T 1pc2_A 91 LKYVRGLLQ--TEPQNNQAKELERL 113 (152)
T ss_dssp HHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHh--cCCCCHHHHHHHHH
Confidence 999999998 56765444444433
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.65 E-value=0.054 Score=54.24 Aligned_cols=25 Identities=8% Similarity=-0.190 Sum_probs=12.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHH
Q 007193 411 TYSILLVACERKDDVEVGLMLLSQA 435 (613)
Q Consensus 411 t~~~ll~a~~~~g~~~~a~~~~~~m 435 (613)
+++.+...|...|++++|..++++.
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3444455555555555555555544
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.63 E-value=0.027 Score=56.35 Aligned_cols=85 Identities=13% Similarity=0.105 Sum_probs=47.4
Q ss_pred cCCHHHHHHHHHHHHHC-----C--CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CCC-HHHHHHHHH
Q 007193 317 AGKVEAAFEILQEAKNQ-----G--ISVGIISYSSLMGACSNAKNWQKALELYEHMKS-----IKL-KPT-VSTMNALIT 382 (613)
Q Consensus 317 ~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~-~~~-~~~~~~li~ 382 (613)
.|++++|..++++..+. | .+....+++.|..+|...|++++|..++++..+ .|. .|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35666776666665432 1 111234566666777777777777766666543 110 122 345666666
Q ss_pred HHHcCCChhHHHHHHHHHH
Q 007193 383 ALCDGDQLPKTMEVLSDMK 401 (613)
Q Consensus 383 ~~~~~g~~~~A~~l~~~m~ 401 (613)
.|...|++++|+.++++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 6666666666666666543
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.54 E-value=0.037 Score=41.99 Aligned_cols=53 Identities=15% Similarity=0.180 Sum_probs=24.1
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 007193 102 CASSKDSEGAFQVLRLVQEAGLKADCK-LYTTLITTCAKSGKVDAMFEVFHEMVN 155 (613)
Q Consensus 102 ~~~~~~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (613)
+.+.|++++|...++...+.. +.+.. .+..+..+|...|++++|.+.|++..+
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334444455555444444432 22333 444444444444555555544444443
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.40 E-value=0.098 Score=39.50 Aligned_cols=56 Identities=20% Similarity=0.322 Sum_probs=30.3
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 242 KACANAGQVDRAREVYKMIHKYNIKGTPE-VYTIAINCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 242 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (613)
..+.+.|++++|...|++..+.. +.+.. .|..+...|...|++++|.+.|++..+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34445555555555555555543 33344 5555555555555555555555555544
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.36 E-value=0.05 Score=54.40 Aligned_cols=84 Identities=8% Similarity=-0.060 Sum_probs=46.0
Q ss_pred CChhHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCC-HHHHHHHHHH
Q 007193 141 GKVDAMFEVFHEMVNA---GIEP----NVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-----N-VKPD-RVVFNALITA 206 (613)
Q Consensus 141 g~~~~a~~~~~~m~~~---g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~-~~~~~~li~~ 206 (613)
|++++|+.++++..+. -+.| ...+++.|...|...|++++|..++++..+. | -.|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4556666666554431 0111 1345666666666666666666666665431 1 1222 3356666666
Q ss_pred HHccCCHHHHHHHHHHHh
Q 007193 207 CGQSGAVDRAFDVLAEMN 224 (613)
Q Consensus 207 ~~~~g~~~~a~~~~~~m~ 224 (613)
|...|++++|..++++..
T Consensus 392 ~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHH
Confidence 666777666666666554
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.33 E-value=0.15 Score=50.96 Aligned_cols=61 Identities=21% Similarity=0.097 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 271 VYTIAINCCSQTGDWEFACSVYDDMTK-----KGV-IPD-EVFLSALIDFAGHAGKVEAAFEILQEAK 331 (613)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~-~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~ 331 (613)
+++.+...|...|++++|+.++++... .|. .|+ ..+++.|...|...|++++|..++++..
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 445555555555555555555554432 111 111 1344555555555555555555555543
No 220
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.96 E-value=0.26 Score=36.95 Aligned_cols=67 Identities=6% Similarity=-0.048 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007193 232 PDHITIGALMKACANAGQ---VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (613)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 299 (613)
.|...+..+..++...++ .++|..+|++..+.+ +.++.....+...+.+.|++++|+..|+.+.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 344455555555543333 466666666666655 4555666666666666666666666666666553
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.95 E-value=0.21 Score=37.52 Aligned_cols=65 Identities=9% Similarity=0.033 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007193 126 DCKLYTTLITTCAKSGK---VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (613)
Q Consensus 126 ~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (613)
|+..+..+..++...++ .++|..++++..+.. +-+......+...+.+.|++++|+..|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34444444444432222 345555555544432 223444444444555555555555555555443
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.72 E-value=1 Score=38.10 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=20.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 007193 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222 (613)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 222 (613)
..|+++.|.++.+++. +...|..|.......|+++-|.+.|.+
T Consensus 17 ~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 17 EYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 4444454444444331 344455555555555555555555444
No 223
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.51 E-value=1.9 Score=36.43 Aligned_cols=98 Identities=9% Similarity=0.077 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 007193 74 QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153 (613)
Q Consensus 74 ~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 153 (613)
.|+++.|.++.+.+ .+...|..|.......|+++-|...|..... +..+.-.|...|+.+.-.++-+..
T Consensus 18 lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla~iA 86 (177)
T 3mkq_B 18 YGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQNIA 86 (177)
T ss_dssp TTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34444444444333 2345566666666666666666666665542 333444555566665555544444
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007193 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (613)
Q Consensus 154 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (613)
...| -++.....+.-.|+++++.++|.+.
T Consensus 87 ~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 87 QTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 4332 1444445555666666666666444
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.08 E-value=0.3 Score=40.23 Aligned_cols=84 Identities=14% Similarity=0.067 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHcCCChhHHHH
Q 007193 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAK---NWQKALELYEHMKSIKLKP--TVSTMNALITALCDGDQLPKTME 395 (613)
Q Consensus 321 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~ 395 (613)
..+.+-|....+.+ +++..+...+.-++++.+ +.+++..+|+...+.. .| +...+-.|.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 34455555555554 356666666666677766 4557777777766543 13 23444455666677777777777
Q ss_pred HHHHHHhCCCCCC
Q 007193 396 VLSDMKSLGLCPN 408 (613)
Q Consensus 396 l~~~m~~~g~~p~ 408 (613)
.++.+.+ +.|+
T Consensus 93 y~~~lL~--ieP~ 103 (152)
T 1pc2_A 93 YVRGLLQ--TEPQ 103 (152)
T ss_dssp HHHHHHH--HCTT
T ss_pred HHHHHHh--cCCC
Confidence 7777776 3564
No 225
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.94 E-value=1.9 Score=34.29 Aligned_cols=61 Identities=16% Similarity=0.047 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007193 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (613)
Q Consensus 308 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 369 (613)
...++.....|+-++-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.+.-+.|
T Consensus 95 d~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 95 NKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 33334444444444444444443221 23444444444444444444444444444444433
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.84 E-value=4 Score=37.62 Aligned_cols=93 Identities=16% Similarity=0.138 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHhhCCCCCCCC---HHHHHHHHHHHHhc-----CChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-C
Q 007193 213 VDRAFDVLAEMNAEVHPVDPD---HITIGALMKACANA-----GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT-G 283 (613)
Q Consensus 213 ~~~a~~~~~~m~~~~~~~~~~---~~~~~~ll~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g 283 (613)
...|...+++..+. .|+ -..|..+...|.+. |+.++|.+.|++..+.+-..+..++......++.. |
T Consensus 179 l~~A~a~lerAleL----DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDL----WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHH----CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHh----CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence 45677777777653 555 55778888888884 88999999999888875323477888888888884 8
Q ss_pred CHHHHHHHHHHHHHCCCC--CCHHHHHH
Q 007193 284 DWEFACSVYDDMTKKGVI--PDEVFLSA 309 (613)
Q Consensus 284 ~~~~a~~~~~~m~~~g~~--p~~~~~~~ 309 (613)
+.+++.+.+++....... |+....+.
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 889999999988887666 66544443
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.62 E-value=4.4 Score=37.36 Aligned_cols=94 Identities=13% Similarity=0.010 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHH
Q 007193 250 VDRAREVYKMIHKYNIKG--TPEVYTIAINCCSQT-----GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA-GKVE 321 (613)
Q Consensus 250 ~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~ 321 (613)
...|...+++..+.+ +. +...|..+...|.+. |+.++|.+.|++..+.+..-+..++......+++. |+.+
T Consensus 179 l~~A~a~lerAleLD-P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 179 VHAAVMMLERACDLW-PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHC-TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 466777788877764 22 256888899888884 89999999999988865432356666777777774 8899
Q ss_pred HHHHHHHHHHHCCCC--cCHHhHHH
Q 007193 322 AAFEILQEAKNQGIS--VGIISYSS 344 (613)
Q Consensus 322 ~a~~~~~~~~~~~~~--~~~~~~~~ 344 (613)
++...+++....... |+....+.
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCChhHHHH
Confidence 999999999887655 55444443
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=92.98 E-value=1.1 Score=34.18 Aligned_cols=63 Identities=11% Similarity=-0.044 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 236 TIGALMKACANAGQVDRAREVYKMIHKYN------IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (613)
.+..+...+.+.+++..|...|+...+.. -.+...++..+..++.+.|+++.|...+++..+.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34445555555556666555555543321 1123445555556666666666666666655543
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=92.80 E-value=0.5 Score=36.17 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 410 ITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 410 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
..+..+..++.+.|+++.|...++++.+
T Consensus 47 ~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 47 SVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3444444455555555555555555444
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.79 E-value=0.76 Score=37.41 Aligned_cols=65 Identities=11% Similarity=0.001 Sum_probs=48.0
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007193 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451 (613)
Q Consensus 386 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 451 (613)
..++.++|.++|+.++..+-+- ...|.....--.++|++..|++++.+.+..+..|....-.++-
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~ 136 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALR 136 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 3478899999999987643222 6667776677788999999999999999887776554444443
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.94 E-value=1.5 Score=35.77 Aligned_cols=113 Identities=10% Similarity=-0.001 Sum_probs=74.5
Q ss_pred CCCHHHHHHHHHHHHcCCCh------HHHHHHHHHHHHcCCCCCHH----HHHHHHH---HHHHcCChhHHHHHHHHHHH
Q 007193 89 NPTLSTFNMLMSVCASSKDS------EGAFQVLRLVQEAGLKADCK----LYTTLIT---TCAKSGKVDAMFEVFHEMVN 155 (613)
Q Consensus 89 ~~~~~~~~~li~~~~~~~~~------~~A~~~~~~m~~~g~~~~~~----~~~~li~---~~~~~g~~~~a~~~~~~m~~ 155 (613)
+.|..+|-..+...-+.|+. ++.+++|++.... ++|+.. .|--|-- .+...+++++|.++|+.+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 55778888888888777888 7888888887764 455421 1111111 11344788888888888876
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007193 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204 (613)
Q Consensus 156 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 204 (613)
.. +.=...|-.....-.+.|++..|.+++......+..| ...+...+
T Consensus 89 ~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~ 135 (161)
T 4h7y_A 89 NC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIAL 135 (161)
T ss_dssp HC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHH
T ss_pred Hh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHH
Confidence 52 3336667777777778888888888888888776443 33443333
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.94 E-value=1.7 Score=34.38 Aligned_cols=90 Identities=14% Similarity=0.061 Sum_probs=59.6
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhH---HHHHHHHHHhCCCCC-C-HHHHHHHHHHHhhcCCH
Q 007193 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK---TMEVLSDMKSLGLCP-N-TITYSILLVACERKDDV 425 (613)
Q Consensus 351 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~l~~~m~~~g~~p-~-~~t~~~ll~a~~~~g~~ 425 (613)
....+..+.+-|......| .++..+-..+..++.++....+ ++.++++..+.+ .| + ....-.+.-++.+.|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhH
Confidence 3344455556666555444 3677777777788888777665 888888877653 24 2 23334455678888899
Q ss_pred HHHHHHHHHHHHcCCCCCH
Q 007193 426 EVGLMLLSQAKEDGVIPNL 444 (613)
Q Consensus 426 ~~a~~~~~~m~~~g~~p~~ 444 (613)
++|++.++.+++ +.|+.
T Consensus 91 ~~A~~~~~~lL~--~eP~n 107 (126)
T 1nzn_A 91 EKALKYVRGLLQ--TEPQN 107 (126)
T ss_dssp HHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHHH--hCCCC
Confidence 999888888887 45654
No 233
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=91.17 E-value=4.8 Score=32.07 Aligned_cols=137 Identities=15% Similarity=0.110 Sum_probs=69.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 007193 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254 (613)
Q Consensus 175 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 254 (613)
.|.+++..++..+.... .+..-||.+|--....-+-+-..++++.+-.. -| ...+|++....
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-----FD----------is~C~NlKrVi 81 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-----FD----------LDKCQNLKSVV 81 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-----SC----------GGGCSCTHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh-----cC----------cHhhhcHHHHH
Confidence 45566666666655543 13445555555445555555555555554331 11 11223333322
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007193 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (613)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (613)
.-+-.+-. +......-++.+...|+-++-.+++..+.. +..|+....-.+..+|.+.|+..+|.+++.+.-+.|
T Consensus 82 ~C~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 22222111 113344455556666666666666666433 234455666666666666666666666666666665
Q ss_pred C
Q 007193 335 I 335 (613)
Q Consensus 335 ~ 335 (613)
+
T Consensus 156 ~ 156 (172)
T 1wy6_A 156 E 156 (172)
T ss_dssp C
T ss_pred h
Confidence 4
No 234
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.49 E-value=19 Score=39.22 Aligned_cols=342 Identities=10% Similarity=0.010 Sum_probs=165.5
Q ss_pred HHHHHhcCCHHHH-HH-HHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCC----CCHH--HHHHHHHHHH
Q 007193 32 YNRLIRQGRISEC-ID-LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLS--TFNMLMSVCA 103 (613)
Q Consensus 32 ~~~l~~~g~~~~A-~~-l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~--~~~~li~~~~ 103 (613)
.|.++..|--... +. -.+.+.+.. +|.......-+. ....|+.++++.+++.... .+.. .=..+.-+..
T Consensus 346 ~Naf~naG~~~D~~l~~~~~Wl~k~~--~~~k~sA~aSLG-lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli 422 (963)
T 4ady_A 346 ANGFMHAGTTDNSFIKANLPWLGKAQ--NWAKFTATASLG-VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLI 422 (963)
T ss_dssp HHHHHTTTTCCCHHHHHCHHHHHHCC--THHHHHHHHHHH-HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCcchhhhcchhhhhccc--hHHHHHHHHHhh-hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHh
Confidence 4777766633222 11 123444432 343332222122 2344566777888876443 2322 2222333455
Q ss_pred cCCChHHHHHHHHHHHHcCC-------CCCHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHCCCCCCHHH--HH--HHHHH
Q 007193 104 SSKDSEGAFQVLRLVQEAGL-------KADCKLYTTLITTCAKSGKV-DAMFEVFHEMVNAGIEPNVHT--YG--ALIDG 171 (613)
Q Consensus 104 ~~~~~~~A~~~~~~m~~~g~-------~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~~~~~~--~~--~li~~ 171 (613)
..|..+++..++.......- .+....-.++--+++-.|.- +++.+.+..+.... +..+ .. +|...
T Consensus 423 ~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli 499 (963)
T 4ady_A 423 YAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLC 499 (963)
T ss_dssp TTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhh
Confidence 66666677776666554321 01122233333333334432 45566666665432 2221 22 22333
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHH---HHHHHHHh
Q 007193 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT--ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG---ALMKACAN 246 (613)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~---~ll~~~~~ 246 (613)
+.-.|+.+....++..+.+.. +......+.- ++...|+.+.+..+.+.+.... .|. .-|. ++.-+|+.
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~---dp~-vRygaa~alglAyaG 572 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD---ESL-LRYGGAFTIALAYAG 572 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS---CHH-HHHHHHHHHHHHTTT
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC---CHH-HHHHHHHHHHHHhcC
Confidence 445677777777777666531 3333333333 3446678777777777776531 222 2222 23345667
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHH
Q 007193 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV-EAAFE 325 (613)
Q Consensus 247 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~a~~ 325 (613)
.|+.....+++..+.+.. ..+......+.-++...|+.+.+.+++..+.+.+ .|....-..+.-+....|.. .++..
T Consensus 573 TGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid 650 (963)
T 4ady_A 573 TGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAID 650 (963)
T ss_dssp SCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHH
Confidence 778777777887776542 2222222233334445666666777776666543 23333333333333334433 56777
Q ss_pred HHHHHHHCCCCcCHHhHHHHHHHHHhcC---------CHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHcCCChh
Q 007193 326 ILQEAKNQGISVGIISYSSLMGACSNAK---------NWQKALELYEHMKSI-KLKPTVSTMNALITALCDGDQLP 391 (613)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~li~~~~~~g---------~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~ 391 (613)
++..+... +|..+-...+.++...| ++..-++.+...... .-.++...-..+..+....|.-.
T Consensus 651 ~L~~L~~D---~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n 723 (963)
T 4ady_A 651 VLDPLTKD---PVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRN 723 (963)
T ss_dssp HHHHHHTC---SSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGT
T ss_pred HHHHHccC---CCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCc
Confidence 77777643 34444433333443322 344444444444332 11233444555666666666543
No 235
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.01 E-value=5.5 Score=39.78 Aligned_cols=66 Identities=17% Similarity=0.230 Sum_probs=28.8
Q ss_pred CCCcccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCchHHHHHHHHHHHhhhHHHHHHHHHH
Q 007193 18 HANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKG----LLDMDKVYHARFFNVCKSQKAIKEAFRFF 84 (613)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 84 (613)
..+|.............+.+ |++++|++.+-.+.+.. -.++.......++..|...++++...+.+
T Consensus 10 e~D~s~~~~~~~~~~~~l~~-~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i 79 (445)
T 4b4t_P 10 DKDYSQILKEEFPKIDSLAQ-NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQL 79 (445)
T ss_dssp ------------------CH-HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 34555556666655666544 77888888877666531 12344445555666777666666554443
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=89.73 E-value=1.7 Score=34.42 Aligned_cols=86 Identities=12% Similarity=0.037 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHcCCChhHH
Q 007193 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK---ALELYEHMKSIKLKP--TVSTMNALITALCDGDQLPKT 393 (613)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A 393 (613)
.+..+.+-|......| .++..+-..+..++.+...... ++.+++.+...+ .| .....-.|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3444555555554444 3566666666667777666554 777777776643 12 233444566677888888888
Q ss_pred HHHHHHHHhCCCCCC
Q 007193 394 MEVLSDMKSLGLCPN 408 (613)
Q Consensus 394 ~~l~~~m~~~g~~p~ 408 (613)
.+.++.+.+ +.|+
T Consensus 94 ~~~~~~lL~--~eP~ 106 (126)
T 1nzn_A 94 LKYVRGLLQ--TEPQ 106 (126)
T ss_dssp HHHHHHHHH--HCTT
T ss_pred HHHHHHHHH--hCCC
Confidence 888888777 3564
No 237
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.69 E-value=3.1 Score=31.12 Aligned_cols=65 Identities=17% Similarity=0.262 Sum_probs=51.7
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007193 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (613)
Q Consensus 389 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 454 (613)
+.-+..+-++.+....+.|++....+.+.||.+..++..|.++++-+... +.+...+|..++.-+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqEl 89 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 89 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHHH
Confidence 34466777777778889999999999999999999999999999988742 233355788887654
No 238
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.18 E-value=13 Score=42.20 Aligned_cols=89 Identities=9% Similarity=0.098 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007193 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN----VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202 (613)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 202 (613)
..-|..++..+.+.+.++.+.++-....+..-+.+ ...|..+.+.+...|++++|...+-.+..... -...+..
T Consensus 899 ~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~ 976 (1139)
T 4fhn_B 899 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLD 976 (1139)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHH
Confidence 34566677777777777777766655544321111 12467777778888888888877777765532 3456667
Q ss_pred HHHHHHccCCHHHHH
Q 007193 203 LITACGQSGAVDRAF 217 (613)
Q Consensus 203 li~~~~~~g~~~~a~ 217 (613)
|+...+..+..+.-.
T Consensus 977 LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 977 FVNQLTKQGKINQLL 991 (1139)
T ss_dssp HHHHHHHHCCHHHHH
T ss_pred HHHHHHhCCChhhhh
Confidence 777777766655443
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=86.55 E-value=2.7 Score=44.82 Aligned_cols=51 Identities=12% Similarity=0.163 Sum_probs=25.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 007193 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (613)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 400 (613)
+...|+++.|+++-++....- +-+-.+|-.|..+|.+.|+++.|+-.++.+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 334555555555555544321 122455555555555555555555555544
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.04 E-value=3 Score=40.84 Aligned_cols=57 Identities=14% Similarity=0.134 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 007193 166 GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (613)
Q Consensus 166 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 223 (613)
..++..+...|++++|...+..+.... +.+...|..+|.++.+.|+..+|.+.|++.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334445555555555555555554331 334455555555555555555555555443
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=84.91 E-value=10 Score=40.36 Aligned_cols=129 Identities=16% Similarity=0.098 Sum_probs=70.2
Q ss_pred HHHHHHHHHhcCC-hHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHC------CCCC-CHH--
Q 007193 237 IGALMKACANAGQ-VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD-WEFACSVYDDMTKK------GVIP-DEV-- 305 (613)
Q Consensus 237 ~~~ll~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~------g~~p-~~~-- 305 (613)
..+++..+...++ .+.|..+|+++...+...+......++..+.+.+. --+|.+++.+..+. ...+ +..
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 3445555555555 46677777777665421121222233333333332 22344444443321 1111 111
Q ss_pred --------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 306 --------FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (613)
Q Consensus 306 --------~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (613)
....=.+-|...|+++.|+.+-++..... +.+..+|..|..+|.+.|+++.|+-.++.+.
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11111234556788888888888877663 5567788888888888888888888877763
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.00 E-value=5 Score=39.23 Aligned_cols=70 Identities=16% Similarity=0.071 Sum_probs=43.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCcCHHhH
Q 007193 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN-----QGISVGIISY 342 (613)
Q Consensus 272 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~ 342 (613)
...++..+...|+++++...+..+....+- +...+..+|.++.+.|+..+|+..|+...+ .|+.|+..+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 344556666667777776666666554332 566667777777777777777766666543 3666766554
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.77 E-value=37 Score=33.74 Aligned_cols=96 Identities=17% Similarity=0.160 Sum_probs=50.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCC----HHH
Q 007193 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPD---HITIGALMKACANAGQVDRAREVYKMIHKY--NIKGT----PEV 271 (613)
Q Consensus 201 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~ 271 (613)
..|...+-..|++.+|.+++..+..+..+..+. ...+...+..|...+++..|..++.++... ...++ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 345566666677777777766665432222211 233444556666667777776666655321 11111 123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 272 YTIAINCCSQTGDWEFACSVYDDMT 296 (613)
Q Consensus 272 ~~~li~~~~~~g~~~~a~~~~~~m~ 296 (613)
+..++..+...+++.+|-+.|.+..
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4455555556666666665555543
No 244
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=83.43 E-value=57 Score=35.68 Aligned_cols=267 Identities=9% Similarity=0.028 Sum_probs=128.7
Q ss_pred HHHcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--C-----CCHHHHHHHHHHH
Q 007193 137 CAKSGKVDAMFEVFHEMVNAG--IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV--K-----PDRVVFNALITAC 207 (613)
Q Consensus 137 ~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~-----p~~~~~~~li~~~ 207 (613)
....|+.++++.+++.....+ -.+....-..+.-+.+..|...++..++.......- . +....-.++--+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 345566677776666654311 012223333444455566665667776665543210 0 1111112222222
Q ss_pred H--ccCCHHHHHHHHHHHhhCCCCCCCCHHH--HH--HHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHH--HHHH
Q 007193 208 G--QSGAVDRAFDVLAEMNAEVHPVDPDHIT--IG--ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA--INCC 279 (613)
Q Consensus 208 ~--~~g~~~~a~~~~~~m~~~~~~~~~~~~~--~~--~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--i~~~ 279 (613)
+ -.++ +++.+.+..+... .+..+ .. ++...+.-.|+.+....++..+.+.. +..+...+ .-++
T Consensus 464 a~~GS~~-eev~e~L~~~L~d-----d~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGl 534 (963)
T 4ady_A 464 AAMGSAN-IEVYEALKEVLYN-----DSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLAL 534 (963)
T ss_dssp HSTTCCC-HHHHHHHHHHHHT-----CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHH
T ss_pred HhcCCCC-HHHHHHHHHHHhc-----CCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHh
Confidence 2 2333 3445555554432 12111 11 22233445566666667776665532 22232223 3334
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHH
Q 007193 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLS---ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356 (613)
Q Consensus 280 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~---~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 356 (613)
...|+.+.+..+.+.+.... .|. .-|. ++.-+|+..|+......++..+.... ..++.-...+.-++...|+.+
T Consensus 535 l~~g~~e~~~~li~~L~~~~-dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e 611 (963)
T 4ady_A 535 INYGRQELADDLITKMLASD-ESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYT 611 (963)
T ss_dssp HTTTCGGGGHHHHHHHHHCS-CHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCS
T ss_pred hhCCChHHHHHHHHHHHhCC-CHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHH
Confidence 46677777777777776541 121 2222 22335666777766666777776542 222332223333344466666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh-hHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007193 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQL-PKTMEVLSDMKSLGLCPNTITYSILLVAC 419 (613)
Q Consensus 357 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 419 (613)
.+.++++.+.+.+ .|.+..-..+.-+....|.. .++++++..+.. .+|..+-...+.+.
T Consensus 612 ~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 612 TVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIAL 671 (963)
T ss_dssp SHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHH
Confidence 6667766555533 34444444455555555554 467777777764 35554443333333
No 245
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.13 E-value=16 Score=29.04 Aligned_cols=63 Identities=17% Similarity=0.272 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007193 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (613)
Q Consensus 391 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 454 (613)
-+..+-++.+....+.|++......+.+|.+..|+..|.++++-+... +.+...+|..++.-+
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqEl 132 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 132 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHHH
Confidence 356666777777889999999999999999999999999999988743 334466788887654
No 246
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=82.91 E-value=12 Score=27.94 Aligned_cols=87 Identities=11% Similarity=0.130 Sum_probs=50.6
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007193 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185 (613)
Q Consensus 106 ~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 185 (613)
...++|..+-+.+...+. ...+-.+-+..+...|++++|..+.+.+. .||...|-+|-. .+.|..+++...+
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 355666666666665542 22222222334556777777777666554 677777766644 3566767777666
Q ss_pred HHHHhCCCCCCHHHHH
Q 007193 186 GIMRSKNVKPDRVVFN 201 (613)
Q Consensus 186 ~~m~~~g~~p~~~~~~ 201 (613)
.++..+| .|....|.
T Consensus 93 ~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 93 NRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHTTCC-CHHHHHHH
T ss_pred HHHHhCC-CHHHHHHH
Confidence 6666665 44444443
No 247
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=81.41 E-value=36 Score=32.04 Aligned_cols=192 Identities=12% Similarity=0.064 Sum_probs=104.4
Q ss_pred ccchhhhHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHH
Q 007193 22 AHDVSEQLHSYNRLIRQGRI---SECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNML 98 (613)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~---~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 98 (613)
.+.+...+.-...-|..|++ =||.+.++.+..+ +.+++++++|+.++-..
T Consensus 9 ~~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~R----------------y~~~k~y~eAidLL~~G----------- 61 (336)
T 3lpz_A 9 SNKIERIIARLQRRIAEGQPEEQYEAAQETRLVAAR----------------YSKQGNWAAAVDILASV----------- 61 (336)
T ss_dssp -CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH----------------HHHTTCHHHHHHHHHHH-----------
T ss_pred hhHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHH----------------HHhhcCHHHHHHHHHHH-----------
Confidence 34455666667777888998 7787777655433 34556677777654321
Q ss_pred HHHHHcCCChHHHHHHH----HHHHHcCCCCCHHHHHHHHHHHHHcCChh-HHHHHHHHHHH----CC--CCCCHHHHHH
Q 007193 99 MSVCASSKDSEGAFQVL----RLVQEAGLKADCKLYTTLITTCAKSGKVD-AMFEVFHEMVN----AG--IEPNVHTYGA 167 (613)
Q Consensus 99 i~~~~~~~~~~~A~~~~----~~m~~~g~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~m~~----~g--~~~~~~~~~~ 167 (613)
...+.+.|+...|-++. +-..+.++++|......|+..+.....-+ .=..+.+++.+ .| -.-|......
T Consensus 62 A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ 141 (336)
T 3lpz_A 62 SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHV 141 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHH
T ss_pred HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHH
Confidence 23345556665555444 55556788888888888888777665422 11223333321 12 1235555666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhc
Q 007193 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (613)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~ 247 (613)
+...|.+.+++.+|..-|- . |-.++...|..++.-+...+.. ..+|.+...+++. |.-.
T Consensus 142 ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~----------------~e~dlfiaRaVL~-yL~l 200 (336)
T 3lpz_A 142 VGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDES----------------HTAPLYCARAVLP-YLLV 200 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCG----------------GGHHHHHHHHHHH-HHHT
T ss_pred HHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCC----------------ccHHHHHHHHHHH-HHHh
Confidence 6677777777777766652 2 2233334554444333332221 1223333333333 4445
Q ss_pred CChHHHHHHHHHHH
Q 007193 248 GQVDRAREVYKMIH 261 (613)
Q Consensus 248 g~~~~A~~~~~~~~ 261 (613)
+++..|..+|+...
T Consensus 201 ~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 201 ANVRAANTAYRIFT 214 (336)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 66777766655443
No 248
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=80.58 E-value=20 Score=28.48 Aligned_cols=79 Identities=11% Similarity=0.103 Sum_probs=55.8
Q ss_pred CCCHHHHHHHHHHHHcCCCh---hHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHH
Q 007193 371 KPTVSTMNALITALCDGDQL---PKTMEVLSDMKSLGLCP--NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445 (613)
Q Consensus 371 ~~~~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~ 445 (613)
.|+..+--.+..++.++... .+++.+++++.+.+ | ....+-.+.-++.+.|++++|+++.+.+.+ +.|+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 112 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence 57777766677777777654 46888888887754 4 234455566788999999999999998887 567755
Q ss_pred HHHHHHHH
Q 007193 446 MFKCIIGM 453 (613)
Q Consensus 446 ~~~~li~~ 453 (613)
-...|-.+
T Consensus 113 QA~~Lk~~ 120 (134)
T 3o48_A 113 QVGALKSM 120 (134)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 249
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=79.98 E-value=11 Score=28.03 Aligned_cols=87 Identities=17% Similarity=0.143 Sum_probs=50.2
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007193 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185 (613)
Q Consensus 106 ~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 185 (613)
...++|..+-+.+...+. ...+-.+-+..+...|++++|..+.+.+. .||...|-+|-. .+.|..+++...+
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 345666666666665542 22222222334556777777777665554 577777766644 3667777777766
Q ss_pred HHHHhCCCCCCHHHHH
Q 007193 186 GIMRSKNVKPDRVVFN 201 (613)
Q Consensus 186 ~~m~~~g~~p~~~~~~ 201 (613)
.++..+| .|....|.
T Consensus 92 ~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 92 AGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHTCS-SHHHHHHH
T ss_pred HHHHhCC-CHHHHHHH
Confidence 6666665 44444443
No 250
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=78.71 E-value=18 Score=27.02 Aligned_cols=49 Identities=12% Similarity=0.143 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007193 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (613)
Q Consensus 285 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (613)
.-+..+-++.+...++.|+.....+.+.+|.+.+++..|..+++-++.+
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3344555555555555666666666666666666666666666555443
No 251
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=78.27 E-value=4.5e-05 Score=74.53 Aligned_cols=230 Identities=11% Similarity=0.139 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007193 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207 (613)
Q Consensus 128 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 207 (613)
.+|..|..+....+++.+|++-|-+. .|...|..+|....+.|.+++-.+.+...++.. .+...=+.|+-+|
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ay 126 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFAL 126 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHH
Confidence 35666666666666666666555221 245556677777777777777776665555442 2333445667777
Q ss_pred HccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 007193 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287 (613)
Q Consensus 208 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 287 (613)
++.++..+..+++ -.||..-...+.+-|...|.++.|.-+|..+.. |..|...+.+.|++..
T Consensus 127 Ak~~rL~elEefl---------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 127 AKTNRLAELEEFI---------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQA 188 (624)
T ss_dssp HTSCSSSTTTSTT---------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGS
T ss_pred HhhCcHHHHHHHH---------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHH
Confidence 7777654432221 134554555666667777777777666654322 3334444555666655
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007193 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (613)
Q Consensus 288 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (613)
|.+.-++ .-+..||..+-.+|...+.+..|.-.--.++-. +.-...++..|-..|.+++-+.+++.-..
T Consensus 189 AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglg 257 (624)
T 3lvg_A 189 AVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALG 257 (624)
T ss_dssp STTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTT
T ss_pred HHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhC
Confidence 5443222 124456777777777777666554433333222 11223445556677777777777666543
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChhHHHHH
Q 007193 368 IKLKPTVSTMNALITALCDGDQLPKTMEV 396 (613)
Q Consensus 368 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l 396 (613)
.. ......|+-|.-.|++- ++++-.+.
T Consensus 258 lE-rAHmGmFTELaILYsKY-~PeKlmEH 284 (624)
T 3lvg_A 258 LE-RAHMGMFTELAILYSKF-KPQKMREH 284 (624)
T ss_dssp ST-TCCHHHHHHHHHHHHSS-CTTHHHHH
T ss_pred CC-chhHHHHHHHHHHHHhc-CHHHHHHH
Confidence 21 34566677776666654 34444333
No 252
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=77.84 E-value=19 Score=26.75 Aligned_cols=80 Identities=20% Similarity=0.102 Sum_probs=56.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 007193 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRL 117 (613)
Q Consensus 38 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 117 (613)
....++|-.+-+.+...+. ......+-+....++|++++|..+.+..+.||...|.++-. .+.|-.+.+..-+.+
T Consensus 19 ~H~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ---DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAG 93 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 4578889888888888763 32222222334556788999999888888889888877754 456777777776666
Q ss_pred HHHcC
Q 007193 118 VQEAG 122 (613)
Q Consensus 118 m~~~g 122 (613)
+...|
T Consensus 94 la~sg 98 (115)
T 2uwj_G 94 LGGSS 98 (115)
T ss_dssp HHTCS
T ss_pred HHhCC
Confidence 66665
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=77.50 E-value=49 Score=37.58 Aligned_cols=86 Identities=13% Similarity=0.008 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHH
Q 007193 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE----VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346 (613)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 346 (613)
-|..++..+-+.+.++.+.++-....+....-+. ..|..+..++...|++++|...+-.+..... -......|+
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHH
Confidence 3666777777888888777776665543211121 2467777888888888888888877766543 345667777
Q ss_pred HHHHhcCCHHHH
Q 007193 347 GACSNAKNWQKA 358 (613)
Q Consensus 347 ~~~~~~g~~~~A 358 (613)
...+..|..+.-
T Consensus 979 ~~lce~~~~~~L 990 (1139)
T 4fhn_B 979 NQLTKQGKINQL 990 (1139)
T ss_dssp HHHHHHCCHHHH
T ss_pred HHHHhCCChhhh
Confidence 777766665543
No 254
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=77.16 E-value=20 Score=26.67 Aligned_cols=80 Identities=11% Similarity=0.005 Sum_probs=53.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 007193 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRL 117 (613)
Q Consensus 38 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 117 (613)
....++|-.+-+.+...+. ......+-+....++|++++|..+.+..+.||...|.++-.. +.|-.+.+..-+.+
T Consensus 20 ~H~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~ 94 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE---EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNR 94 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHH
Confidence 4577888888888888763 322222223345567888899888888888888888777543 45556666666656
Q ss_pred HHHcC
Q 007193 118 VQEAG 122 (613)
Q Consensus 118 m~~~g 122 (613)
+...|
T Consensus 95 la~sg 99 (116)
T 2p58_C 95 LARSQ 99 (116)
T ss_dssp HTTCC
T ss_pred HHhCC
Confidence 65555
No 255
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=75.26 E-value=23 Score=28.12 Aligned_cols=71 Identities=6% Similarity=-0.060 Sum_probs=38.0
Q ss_pred CcCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 007193 336 SVGIISYSSLMGACSNAKN---WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (613)
Q Consensus 336 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 408 (613)
.|++.+--.+.-++.+..+ ..+++.+++.+.+.+.......+-.|.-++.+.|++++|.+..+.+.+ +.|+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~ 110 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 110 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCC
Confidence 3444444444455555444 334566666655443111234444555666666777777776666665 3454
No 256
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=73.62 E-value=59 Score=30.32 Aligned_cols=135 Identities=13% Similarity=0.106 Sum_probs=78.9
Q ss_pred hhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHc
Q 007193 25 VSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCAS 104 (613)
Q Consensus 25 ~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 104 (613)
+.........-|..|++=||.+.++.+..+ +.+++++++|+.++... ...+.+
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~R----------------y~~~~~~~eAidlL~~g-----------a~~ll~ 65 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANR----------------YVRSKSYEHAIELISQG-----------ALSFLK 65 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------HHHTTCHHHHHHHHHHH-----------HHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHH----------------HHHhcCHHHHHHHHHHH-----------HHHHHH
Confidence 444555555666778888887777655433 33455667776654321 223455
Q ss_pred CCChHHHHHH----HHHHHHcCCCCCHHHHHHHHHHHHHcCChh-HHHHHHHHHH----HCC--CCCCHHHHHHHHHHHH
Q 007193 105 SKDSEGAFQV----LRLVQEAGLKADCKLYTTLITTCAKSGKVD-AMFEVFHEMV----NAG--IEPNVHTYGALIDGCA 173 (613)
Q Consensus 105 ~~~~~~A~~~----~~~m~~~g~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~m~----~~g--~~~~~~~~~~li~~~~ 173 (613)
.|+...|-++ .+-..+.+++++......++..+.....-+ .-.++.+.+. +.| -.-+......+...|.
T Consensus 66 ~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~ 145 (312)
T 2wpv_A 66 AKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLL 145 (312)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHh
Confidence 5666555544 444556678888888888887776643222 1223333333 222 1235667777777788
Q ss_pred hcCCHHHHHHHHH
Q 007193 174 KAGQVAKAFGAYG 186 (613)
Q Consensus 174 ~~g~~~~A~~~~~ 186 (613)
+.|++.+|..-|-
T Consensus 146 ~e~~~~~A~~H~i 158 (312)
T 2wpv_A 146 EGDFVYEAERYFM 158 (312)
T ss_dssp HTTCHHHHHHHHH
T ss_pred hcCCHHHHHHHHH
Confidence 8888877776553
No 257
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=70.54 E-value=38 Score=26.88 Aligned_cols=61 Identities=11% Similarity=0.125 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHH
Q 007193 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346 (613)
Q Consensus 285 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 346 (613)
.-+..+-++.+...++.|+.....+.+.+|-+.+++..|..+|+-++.+- .+...+|..++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 33455555666666677777777777777777777777777777665542 23344455554
No 258
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=66.55 E-value=49 Score=26.60 Aligned_cols=76 Identities=11% Similarity=0.097 Sum_probs=50.4
Q ss_pred CCCHHHHHHHHHHHHcCCCh---hHHHHHHHHHHhCCCCC-CHH-HHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHH
Q 007193 371 KPTVSTMNALITALCDGDQL---PKTMEVLSDMKSLGLCP-NTI-TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445 (613)
Q Consensus 371 ~~~~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~g~~p-~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~ 445 (613)
.|+..+--.+..++.++... .+++.+++++.+.+ | +.. ..-.+.-++.+.|++++|+++.+.+++ ++|+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~--~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC--CSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--ccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcH
Confidence 46666666667777777654 46777888877643 3 333 333455678888888888888888887 567654
Q ss_pred HHHHH
Q 007193 446 MFKCI 450 (613)
Q Consensus 446 ~~~~l 450 (613)
-...|
T Consensus 112 QA~~L 116 (144)
T 1y8m_A 112 QVGAL 116 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 43333
No 259
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=65.44 E-value=15 Score=31.68 Aligned_cols=64 Identities=16% Similarity=0.133 Sum_probs=41.3
Q ss_pred hhhhHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC
Q 007193 25 VSEQLHSYNRLIRQ---GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88 (613)
Q Consensus 25 ~~~~~~~~~~l~~~---g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 88 (613)
....+..|-.+++. +...++.++|..|...|+-...+.++...+..+...|++.+|.++|+...
T Consensus 76 D~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI 142 (202)
T 3esl_A 76 DPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGA 142 (202)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34566666666653 34778888888888777655556566556666666666666666666543
No 260
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=64.26 E-value=69 Score=27.50 Aligned_cols=55 Identities=5% Similarity=0.064 Sum_probs=36.4
Q ss_pred CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 007193 106 KDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP 160 (613)
Q Consensus 106 ~~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 160 (613)
+....+.++|..|..+|+... ..-|......+...|++.+|.++|..-++.+-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 345577777777777666544 4456666666777777777777777776665555
No 261
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=63.10 E-value=1.5e+02 Score=30.85 Aligned_cols=255 Identities=14% Similarity=0.084 Sum_probs=112.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 007193 63 YHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142 (613)
Q Consensus 63 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 142 (613)
+.........+.+++..-+.+|.. ++.+...-.....+....|+..+|....+.+-..| ...+.....++..+.+.|.
T Consensus 74 Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 74 LQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGK 151 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCC
Confidence 333333444445556666665555 34444444555666666777666666666665554 3334455666666665554
Q ss_pred hhH--HHHHHHHHHHCCCCCCHHHHHHHHHHH-----------Hh-cCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHH
Q 007193 143 VDA--MFEVFHEMVNAGIEPNVHTYGALIDGC-----------AK-AGQVAKAFGAYGIMRSKNVKPDRVV---FNALIT 205 (613)
Q Consensus 143 ~~~--a~~~~~~m~~~g~~~~~~~~~~li~~~-----------~~-~g~~~~A~~~~~~m~~~g~~p~~~~---~~~li~ 205 (613)
+.. ..+=++.+...| +...-..|+... .. ..+...+...... +.|+... +...+.
T Consensus 152 lt~~~~~~R~~~al~~~---~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~ 223 (618)
T 1qsa_A 152 QDPLAYLERIRLAMKAG---NTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFART-----TGATDFTRQMAAVAFA 223 (618)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHH-----SCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhc-----cCCChhhHHHHHHHHH
Confidence 432 222222222222 111111111110 00 0011111111111 1122221 111122
Q ss_pred HHHccCCHHHHHHHHHHHhhCCCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 007193 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHI--TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283 (613)
Q Consensus 206 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 283 (613)
-+.+ .+.+.|...+...... ..+.+... ....+.......+...++...+....... .+.....-.+..-.+.|
T Consensus 224 rlar-~d~~~A~~~~~~~~~~-~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~ 299 (618)
T 1qsa_A 224 SVAR-QDAENARLMIPSLAQA-QQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTG 299 (618)
T ss_dssp HHHH-HCHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHT
T ss_pred HHHh-cCHHHHHHHHHhhhhc-cCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCC
Confidence 2222 2567777777666432 12222111 11112222222332445555555543322 23223333333444567
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007193 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (613)
Q Consensus 284 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (613)
+++.|...|..|...... .....--+..++...|+.++|..+|..+.+
T Consensus 300 d~~~a~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 300 DRRGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp CHHHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 777777777777553211 233333444566667777777777777654
No 262
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.66 E-value=1e+02 Score=30.24 Aligned_cols=61 Identities=13% Similarity=-0.003 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKG--TPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (613)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 296 (613)
+...+...|.+.|+++.|.+.|.++......+ -...+-..+..+...+++..+...+.+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44556677777777777777777776543222 23455666666777777777776666653
No 263
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.26 E-value=44 Score=32.97 Aligned_cols=60 Identities=12% Similarity=-0.023 Sum_probs=28.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007193 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260 (613)
Q Consensus 201 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 260 (613)
..+..-|.+.|+++.|.+.|.++.....+...-...+-.++..+...+++..+...+.++
T Consensus 135 ~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 135 INLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp HHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 334444445555555555554444322222222334444555555556666555555554
No 264
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=60.32 E-value=69 Score=26.51 Aligned_cols=56 Identities=5% Similarity=-0.028 Sum_probs=34.6
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcC-CCCCH-------HHHHHHHHHHHHcCChhHHHHHHHHHH
Q 007193 99 MSVCASSKDSEGAFQVLRLVQEAG-LKADC-------KLYTTLITTCAKSGKVDAMFEVFHEMV 154 (613)
Q Consensus 99 i~~~~~~~~~~~A~~~~~~m~~~g-~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~ 154 (613)
++.+...+.++.|+-+.+.+.... ..|+. .++..+.+++...+++..|...|++..
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 455666677777776666644321 12331 245556677778888888888887754
No 265
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=60.05 E-value=45 Score=30.16 Aligned_cols=55 Identities=16% Similarity=0.173 Sum_probs=37.0
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 007193 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (613)
Q Consensus 101 ~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (613)
...+.|++++|++....-++.. +.|...-..|+..+|-.|+++.|.+-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3456677777777766666654 556666677777777777777777666666554
No 266
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=59.99 E-value=66 Score=25.85 Aligned_cols=72 Identities=6% Similarity=-0.057 Sum_probs=43.6
Q ss_pred CcCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH
Q 007193 336 SVGIISYSSLMGACSNAKN---WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409 (613)
Q Consensus 336 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 409 (613)
.|+..+--.+..++.+..+ ..++..+++.+...+........-.|.-++.+.|++++|.+..+.+.+ +.|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence 4556665566666666654 345667777766543222334444566677777777777777777776 35643
No 267
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=58.81 E-value=63 Score=26.77 Aligned_cols=57 Identities=12% Similarity=0.115 Sum_probs=31.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-CCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007193 240 LMKACANAGQVDRAREVYKMIHKYN-IKGTP-------EVYTIAINCCSQTGDWEFACSVYDDMT 296 (613)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~~~~-~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~ 296 (613)
-+..+...+.++.|+-+.+.+.... ..++. .++..+.+++...+++..|...|++..
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3455666667777766666543321 12221 234555666666677777777776643
No 268
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=56.99 E-value=0.00034 Score=68.57 Aligned_cols=257 Identities=13% Similarity=0.145 Sum_probs=162.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHH
Q 007193 161 NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240 (613)
Q Consensus 161 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~l 240 (613)
...+|..|..+....+++.+|++-|-+.. |+..|..++.+..+.|.+++-.+.+.-.++. ..+...=+.|
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA~------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~----~ke~~IDteL 122 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKAD------DPSSYMEVVQAANTSGNWEELVKYLQMARKK----ARESYVETEL 122 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCCS------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT----CCSTTTTHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhCC------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH----hcccccHHHH
Confidence 34468888888888888877766553322 4556778888888888888888887655443 2333445678
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007193 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320 (613)
Q Consensus 241 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 320 (613)
+-+|++.+++.+-.+++. .|+..-...+.+-|...|.++.|.-+|..+.. |..|...+.+.|++
T Consensus 123 i~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~y 186 (624)
T 3lvg_A 123 IFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEY 186 (624)
T ss_dssp HHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGG
T ss_pred HHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHH
Confidence 888888888765544332 34444456677777778888777666655432 33344455566766
Q ss_pred HHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 007193 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (613)
Q Consensus 321 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 400 (613)
..|.+.-+ + ..++.||-.+-.+|...+.+.-|...--.+.- .+| -...++.-|-..|.+++-+.+++.-
T Consensus 187 q~AVdaAr---K---Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEag 255 (624)
T 3lvg_A 187 QAAVDGAR---K---ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAA 255 (624)
T ss_dssp GSSTTTTT---T---CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHH
T ss_pred HHHHHHHH---h---cCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 66554322 2 34788999999999999998877665544442 222 2235677888999999999999886
Q ss_pred HhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH-cCCC------CCHHHHHHHHHHHHh
Q 007193 401 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-DGVI------PNLVMFKCIIGMCSR 456 (613)
Q Consensus 401 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~------p~~~~~~~li~~~~~ 456 (613)
... -+...-+|+-|.-.|++-. +++..+-++.... -++. -....|.-++-.|.+
T Consensus 256 lgl-ErAHmGmFTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ 316 (624)
T 3lvg_A 256 LGL-ERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDK 316 (624)
T ss_dssp TTS-TTCCHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHH
T ss_pred hCC-CchhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhc
Confidence 632 2456677887777777653 3444333332221 1221 123356677766655
No 269
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=55.42 E-value=97 Score=26.38 Aligned_cols=49 Identities=10% Similarity=0.090 Sum_probs=21.3
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007193 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (613)
Q Consensus 125 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 177 (613)
++..+-...+.++.+.++.+. ...+..+.. .++..+-...+.++.+.++
T Consensus 62 ~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---~~~~~vr~~a~~aL~~~~~ 110 (211)
T 3ltm_A 62 EDAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSAAVALGQIGD 110 (211)
T ss_dssp SCHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 344444444555555554322 222222222 3444444555555555554
No 270
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=55.41 E-value=25 Score=30.90 Aligned_cols=22 Identities=14% Similarity=0.297 Sum_probs=11.4
Q ss_pred HHHHcCChhHHHHHHHHHHHCC
Q 007193 136 TCAKSGKVDAMFEVFHEMVNAG 157 (613)
Q Consensus 136 ~~~~~g~~~~a~~~~~~m~~~g 157 (613)
..++.|+.+....+++.+.+.|
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhcC
Confidence 3445555555555555544444
No 271
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=53.44 E-value=17 Score=29.77 Aligned_cols=39 Identities=8% Similarity=-0.055 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH
Q 007193 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC 127 (613)
Q Consensus 89 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~ 127 (613)
..-+..|..-...+...|++.+|.++|+.-++.+..|-.
T Consensus 98 ~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 98 TLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 344555666666777778888888888877777766643
No 272
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=48.01 E-value=29 Score=28.74 Aligned_cols=39 Identities=3% Similarity=-0.111 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH
Q 007193 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128 (613)
Q Consensus 90 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~ 128 (613)
.-+..|..-...+-..|++.+|.++|+.-++.+..|-..
T Consensus 94 ~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 94 SLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 344455555555666677777777777777666666443
No 273
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=45.91 E-value=1.8e+02 Score=27.60 Aligned_cols=65 Identities=11% Similarity=0.149 Sum_probs=37.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCc
Q 007193 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK--VEAAFEILQEAKNQGISV 337 (613)
Q Consensus 272 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~~ 337 (613)
.+.++.-|...|+.++|.+.++++....+. ..+....+..+.-+.++ .+...+++..+.+.|+-+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls 286 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 286 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC
Confidence 466777777788888888888777533222 12333444444444332 345666666666666433
No 274
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=45.89 E-value=1.4e+02 Score=25.35 Aligned_cols=128 Identities=12% Similarity=0.053 Sum_probs=76.6
Q ss_pred HhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 007193 85 KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHT 164 (613)
Q Consensus 85 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 164 (613)
+.+..+|...-...+.++.+.++.+. ...+..+.. .++..+-...+.++.+.++.+ +...+..+.. .++..+
T Consensus 57 ~~l~~~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~v 128 (211)
T 3ltm_A 57 KALKDEDAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFV 128 (211)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHH
T ss_pred HHHcCCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHH
Confidence 34446677666666777777776433 333333332 567777778888888888754 3444444443 567777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 007193 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (613)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 225 (613)
-...+.++.+.|..+ +...+..+.. .++...-...+.++.+.+. .++...+..+..
T Consensus 129 r~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 129 RIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 777777887777643 4444555543 3466665666667766665 344444444443
No 275
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=45.41 E-value=1.4e+02 Score=25.14 Aligned_cols=82 Identities=7% Similarity=0.059 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 007193 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (613)
Q Consensus 89 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 168 (613)
.+|...-...+..+.+.+..+....+.+.+ . .++..+-...+.++++.+..+.. ..+..+.. .++..+-...
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l-~---~~~~~vr~~a~~~L~~~~~~~~~-~~L~~~l~---d~~~~vr~~a 96 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDERAVEPLIKAL-K---DEDAWVRRAAADALGQIGDERAV-EPLIKALK---DEDGWVRQSA 96 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHHHHT-T---CSSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHH-c---CCCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CCCHHHHHHH
Confidence 444444444445555444432222222222 1 33444444555555555543322 22222222 3455555555
Q ss_pred HHHHHhcCCH
Q 007193 169 IDGCAKAGQV 178 (613)
Q Consensus 169 i~~~~~~g~~ 178 (613)
+.++.+.++.
T Consensus 97 ~~aL~~~~~~ 106 (201)
T 3ltj_A 97 AVALGQIGDE 106 (201)
T ss_dssp HHHHHHHCCG
T ss_pred HHHHHHhCcH
Confidence 5555555543
No 276
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=45.18 E-value=1.4e+02 Score=25.49 Aligned_cols=34 Identities=9% Similarity=-0.016 Sum_probs=17.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007193 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317 (613)
Q Consensus 283 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 317 (613)
.+++.|+-.+-+|.+.| .|....-..++-+....
T Consensus 28 SDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDI 61 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG-DLASICRRLMVIGYEDI 61 (204)
T ss_dssp TCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhc
Confidence 55666666666666666 44433333444444333
No 277
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=44.89 E-value=23 Score=31.04 Aligned_cols=60 Identities=12% Similarity=0.200 Sum_probs=35.5
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhC
Q 007193 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87 (613)
Q Consensus 26 ~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 87 (613)
...+..|-.+++. .+++.++|..|...|+-...+.++......+...|++.+|..+|...
T Consensus 117 ~RyLklWl~Ya~~--~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 176 (223)
T 4aez_C 117 VRYLRIWMQYVNY--IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKG 176 (223)
T ss_dssp HHHHHHHHHHHTT--CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4455666566653 34667777777777765555555555555555555566665555543
No 278
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=44.36 E-value=1.3e+02 Score=24.51 Aligned_cols=50 Identities=16% Similarity=0.270 Sum_probs=27.9
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 007193 111 AFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP 160 (613)
Q Consensus 111 A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 160 (613)
+.++|..|..+|+... ..-|......+...|++.+|.++|..-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5566666665555433 3345555555556666666666666655554444
No 279
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=42.99 E-value=1.9e+02 Score=26.14 Aligned_cols=115 Identities=12% Similarity=0.140 Sum_probs=69.9
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHccC
Q 007193 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD----RVVFNALITACGQSG 211 (613)
Q Consensus 136 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g 211 (613)
...+.|+++++++....-++.. +-|...-..|+..+|-.|++++|.+-++...+. .|+ ...|..+|.+-
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~aE---- 78 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAA---- 78 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHHH----
Confidence 4457788999988887777664 567788888999999999999998888877654 343 23444444431
Q ss_pred CHHHHHHHHHHHhhCC--CCC-CCCHHHHHHHHHHHH--hcCChHHHHHHHHHHHhc
Q 007193 212 AVDRAFDVLAEMNAEV--HPV-DPDHITIGALMKACA--NAGQVDRAREVYKMIHKY 263 (613)
Q Consensus 212 ~~~~a~~~~~~m~~~~--~~~-~~~~~~~~~ll~~~~--~~g~~~~A~~~~~~~~~~ 263 (613)
..=.++...+ .++ .....-...++.+.. ..|+.++|.++-..+.+.
T Consensus 79 ------~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 79 ------QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ------HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 1111121110 011 112223344554443 458888888887776543
No 280
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=39.88 E-value=1.4e+02 Score=25.41 Aligned_cols=45 Identities=18% Similarity=0.014 Sum_probs=26.2
Q ss_pred HHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007193 274 IAINCCSQ---TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (613)
Q Consensus 274 ~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 318 (613)
-+|+++.| ..+++.|+-.+-+|++.|..|....-..++-+....|
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 34555543 3677777777777777776655444444444444433
No 281
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=37.89 E-value=2.1e+02 Score=25.21 Aligned_cols=26 Identities=12% Similarity=-0.098 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007193 269 PEVYTIAINCCSQTGDWEFACSVYDD 294 (613)
Q Consensus 269 ~~~~~~li~~~~~~g~~~~a~~~~~~ 294 (613)
+......+..+.+.|+.++|.++|-+
T Consensus 91 ~~~~r~~v~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 91 IVHLKSGTENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 34444445555555666666555544
No 282
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=37.48 E-value=59 Score=28.37 Aligned_cols=86 Identities=13% Similarity=0.090 Sum_probs=44.8
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHh
Q 007193 99 MSVCASSKDSEGAFQVLRLVQEAGLKADCK--LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHT--YGALIDGCAK 174 (613)
Q Consensus 99 i~~~~~~~~~~~A~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~ 174 (613)
+...+..|+.+....+++.+.+.|..++.. .-.+.+...+..|+.+ +++.+.+.|..++... -.+.+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 344566778877777777766666444321 1122344455666654 3444445554443221 1233444456
Q ss_pred cCCHHHHHHHHHHH
Q 007193 175 AGQVAKAFGAYGIM 188 (613)
Q Consensus 175 ~g~~~~A~~~~~~m 188 (613)
.|+.+-+..+++..
T Consensus 89 ~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 89 HRSPTCLRALLDSA 102 (241)
T ss_dssp TTCHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHcC
Confidence 67766555555544
No 283
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=36.77 E-value=96 Score=24.35 Aligned_cols=62 Identities=11% Similarity=0.169 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCC
Q 007193 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK--VEAAFEILQEAKNQG 334 (613)
Q Consensus 272 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~ 334 (613)
.+.++.-|...|+.++|.+.++++...... .......+..+.-+.+. .+....++..+.+.|
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~ 73 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 73 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCC
Confidence 345566666666666666666665422111 12233333334433321 244555555555554
No 284
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=36.24 E-value=1e+02 Score=22.73 Aligned_cols=63 Identities=8% Similarity=0.046 Sum_probs=41.9
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhh--hHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 007193 46 DLLEDMERKGLLDMDKVYHARFFNVCKS--QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQ 113 (613)
Q Consensus 46 ~l~~~m~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 113 (613)
.+++.+.++|++.... .-. +-.. ....+.|.++++.++...+..|..++.++...|+..-|..
T Consensus 25 ~vld~L~~~~vlt~~~-~e~----I~~~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 25 QLWDVLLSRELFRPHM-IED----IQRAGSGSRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp TTHHHHHHTTSSCHHH-HHH----HHTSTTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHcCCCCHHH-HHH----HHhccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHH
Confidence 4778888888754322 111 1112 2467888888988888888888888888877676555533
No 285
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=35.67 E-value=1.9e+02 Score=23.89 Aligned_cols=51 Identities=12% Similarity=0.280 Sum_probs=29.5
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 007193 111 AFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN 161 (613)
Q Consensus 111 A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 161 (613)
+..+|..|..+|+... ...|......+-..|++.+|.++|..-++.+..|.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 5556666666655443 33455555556666666666666666665555553
No 286
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=35.65 E-value=1.9e+02 Score=24.91 Aligned_cols=46 Identities=20% Similarity=0.182 Sum_probs=26.2
Q ss_pred HHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007193 273 TIAINCCSQ---TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (613)
Q Consensus 273 ~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 318 (613)
.-+|+++.| ..+++.|+-.+-+|.+.|..|....-..++-+....|
T Consensus 36 Yd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 36 FDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 344555543 3667777777777777776655444444444444433
No 287
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=35.33 E-value=2.9e+02 Score=25.95 Aligned_cols=66 Identities=12% Similarity=0.103 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH----HHHHhCCCCCCHHHHHHHH
Q 007193 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY----GIMRSKNVKPDRVVFNALI 204 (613)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~~~~~li 204 (613)
+|.++..-|.+.+++++|.+++..-- ..+.+.|+...|-++- +-..+.++++|..+..-++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34455556777788888877654422 1233445544443333 4444456666665555555
Q ss_pred HHHHc
Q 007193 205 TACGQ 209 (613)
Q Consensus 205 ~~~~~ 209 (613)
..+..
T Consensus 102 ~L~~~ 106 (336)
T 3lpz_A 102 GCLRL 106 (336)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 54443
No 288
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=35.27 E-value=2.2e+02 Score=25.11 Aligned_cols=88 Identities=11% Similarity=0.109 Sum_probs=44.8
Q ss_pred HHHHHcCCChHHHHHHHHHHHHc--CCCC----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007193 99 MSVCASSKDSEGAFQVLRLVQEA--GLKA----DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (613)
Q Consensus 99 i~~~~~~~~~~~A~~~~~~m~~~--g~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (613)
++.+....++++|.+++++..+. ++++ +.......+..-.....-.-+..+.+++.. .++.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 55666777777777777665532 2221 111112222222222233334444444422 33455555666777
Q ss_pred HhcCCHHHHHHHHHHHH
Q 007193 173 AKAGQVAKAFGAYGIMR 189 (613)
Q Consensus 173 ~~~g~~~~A~~~~~~m~ 189 (613)
.+.|+-++|.++|-+..
T Consensus 102 ~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHHH
Confidence 77777777777776553
No 289
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=35.13 E-value=1.3e+02 Score=21.86 Aligned_cols=63 Identities=10% Similarity=0.119 Sum_probs=42.0
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHH
Q 007193 44 CIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGA 111 (613)
Q Consensus 44 A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 111 (613)
.-.+++.+.+.+++.... .-.+ -......+.|.++++.++......|..++.++.+.+...-|
T Consensus 24 v~~lld~L~~~~vlt~~~-~e~I----~~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 24 TSYIMDHMISDGFLTISE-EEKV----RNEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHHTSSCHHH-HHHH----HTSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCCCCCHHH-HHHH----HcCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 345788888888764332 1111 12345678888888888888888888888888777654433
No 290
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=32.61 E-value=2.3e+02 Score=24.67 Aligned_cols=51 Identities=20% Similarity=0.190 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 007193 145 AMFEVFHEMVNAGIEP-NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195 (613)
Q Consensus 145 ~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 195 (613)
.+.++|..|...|+-. -...|......+...|++.+|..+|+.-++.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4445555555544322 23344445555555555555555555555544444
No 291
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=31.27 E-value=38 Score=30.50 Aligned_cols=15 Identities=20% Similarity=0.333 Sum_probs=7.0
Q ss_pred HHHHHHHcCChhHHH
Q 007193 133 LITTCAKSGKVDAMF 147 (613)
Q Consensus 133 li~~~~~~g~~~~a~ 147 (613)
.+...++.|+++...
T Consensus 8 ~L~~A~~~g~~~~v~ 22 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQ 22 (285)
T ss_dssp HHHHHHHTTCHHHHH
T ss_pred HHHHHHHcCCHHHHH
Confidence 344445555554333
No 292
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=29.63 E-value=3.5e+02 Score=29.78 Aligned_cols=49 Identities=10% Similarity=-0.035 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcC
Q 007193 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAG 176 (613)
Q Consensus 128 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g 176 (613)
.-|..++..+-+.+.++.+.++-+..++.--.-|. ..|+.+.++.+..|
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 46788888998999998888888777754212232 25667777766554
No 293
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=29.13 E-value=86 Score=25.52 Aligned_cols=62 Identities=11% Similarity=0.169 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCC
Q 007193 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK--VEAAFEILQEAKNQG 334 (613)
Q Consensus 272 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~ 334 (613)
.+.++.-|...|+.++|.+.++++...... ...+...+..++-+.+. .+....++..+.+.+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~ 75 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 75 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCC
Confidence 345566666666666666666665421111 12233333334333222 234555555555554
No 294
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=28.77 E-value=3.5e+02 Score=24.96 Aligned_cols=25 Identities=16% Similarity=0.364 Sum_probs=19.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHH
Q 007193 130 YTTLITTCAKSGKVDAMFEVFHEMV 154 (613)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~ 154 (613)
...++.-|...|+.++|..-++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4567788888888888888888764
No 295
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=28.03 E-value=1e+02 Score=27.43 Aligned_cols=23 Identities=9% Similarity=-0.087 Sum_probs=13.2
Q ss_pred cCCChhHHHHHHHHHHhCCCCCC
Q 007193 386 DGDQLPKTMEVLSDMKSLGLCPN 408 (613)
Q Consensus 386 ~~g~~~~A~~l~~~m~~~g~~p~ 408 (613)
..|......++++.+.+.|..++
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCSS
T ss_pred HccccchHHHHHHHHHHcCCCCC
Confidence 34555555566666666665554
No 296
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=26.89 E-value=2.2e+02 Score=26.23 Aligned_cols=105 Identities=14% Similarity=0.124 Sum_probs=51.1
Q ss_pred HHHHHHHHCCCCcCHHh--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcCCChhHHHHHHHH
Q 007193 325 EILQEAKNQGISVGIIS--YSSLMGACSNAKNWQKALELYEHMKSIKLKPT---VSTMNALITALCDGDQLPKTMEVLSD 399 (613)
Q Consensus 325 ~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~ 399 (613)
.+.+.+.+.|..++... ..+.+...+..|..+....++.. .|..++ ..-++.|..+ ++.|+.+ +.+.
T Consensus 220 ~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~~A-~~~g~~~----iv~~ 291 (337)
T 4g8k_A 220 AITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLA-VELKLKK----IAEL 291 (337)
T ss_dssp HHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHHHH-HHTTCHH----HHHH
T ss_pred HHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHHHH-HHcCCHH----HHHH
Confidence 34445566665544321 12334455667777665554432 122221 1122333333 3455543 4445
Q ss_pred HHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCH
Q 007193 400 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444 (613)
Q Consensus 400 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~ 444 (613)
+.+.|..||..+ .+...++.|+.+ +.+.+++.|-.||.
T Consensus 292 Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 292 LCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKEDF 329 (337)
T ss_dssp HHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC--
T ss_pred HHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCCC
Confidence 567777776544 233334566654 45566677877764
No 297
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=26.50 E-value=80 Score=30.83 Aligned_cols=17 Identities=18% Similarity=0.264 Sum_probs=8.4
Q ss_pred HHHHhcCCHHHHHHHHH
Q 007193 170 DGCAKAGQVAKAFGAYG 186 (613)
Q Consensus 170 ~~~~~~g~~~~A~~~~~ 186 (613)
...++.|+.+-+..+++
T Consensus 118 ~~A~~~g~~~~v~~Ll~ 134 (437)
T 1n11_A 118 HIAAREGHVETVLALLE 134 (437)
T ss_dssp HHHHHHTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHh
Confidence 33445566555444443
No 298
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=26.30 E-value=3.9e+02 Score=24.71 Aligned_cols=114 Identities=14% Similarity=0.067 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH----HHHHHHhCCCCCCHHHHHHHH
Q 007193 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG----AYGIMRSKNVKPDRVVFNALI 204 (613)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~----~~~~m~~~g~~p~~~~~~~li 204 (613)
.|.++..-|.+.+++++|.+++..-. ..+.+.|+...|-+ +.+-..+.+++++.....-++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34555666777777777777764432 12334455544444 344445556777766666666
Q ss_pred HHHHccCCHH-HHHHHHHHH----hhCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 007193 205 TACGQSGAVD-RAFDVLAEM----NAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257 (613)
Q Consensus 205 ~~~~~~g~~~-~a~~~~~~m----~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 257 (613)
..+.....-+ .-.++++++ .+.+..-.-|......+...|.+.+++.+|+..|
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 5554422110 001111111 1110001234455555666666667766666655
No 299
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=26.21 E-value=2.7e+02 Score=22.86 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=15.3
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHH
Q 007193 378 NALITALCDGDQLPKTMEVLSDMK 401 (613)
Q Consensus 378 ~~li~~~~~~g~~~~A~~l~~~m~ 401 (613)
..+|.-|...|+.++|...++++.
T Consensus 14 ~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 14 TPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 445666666667777776666654
No 300
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=25.49 E-value=4.6e+02 Score=25.23 Aligned_cols=27 Identities=11% Similarity=-0.031 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHh
Q 007193 198 VVFNALITACGQSGAVDRAFDVLAEMN 224 (613)
Q Consensus 198 ~~~~~li~~~~~~g~~~~a~~~~~~m~ 224 (613)
.....|...|.+.|+.++..+++....
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~ 46 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTR 46 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344556666666666666666665543
No 301
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=23.10 E-value=2.5e+02 Score=22.38 Aligned_cols=67 Identities=9% Similarity=0.039 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007193 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (613)
Q Consensus 251 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 318 (613)
.....+.+.+.+.|+..+ ..-..++..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 4 ~~~~~~~~~l~~~g~r~T-~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 4 HELKEALETLKETGVRIT-PQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp CHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
No 302
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=22.41 E-value=2.4e+02 Score=22.13 Aligned_cols=57 Identities=16% Similarity=0.056 Sum_probs=25.4
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007193 261 HKYNIKGTPEVYTIAINCCSQTG-DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (613)
Q Consensus 261 ~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 318 (613)
.+.|+..+. .-..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 10 ~~~g~r~T~-qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 10 RKAGLKVTL-PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHTTCCCCH-HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHCCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 344444332 2233344444433 34445555555555544444444444444444444
No 303
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=21.85 E-value=2.7e+02 Score=23.14 Aligned_cols=27 Identities=11% Similarity=0.244 Sum_probs=12.3
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCC
Q 007193 135 TTCAKSGKVDAMFEVFHEMVNAGIEPN 161 (613)
Q Consensus 135 ~~~~~~g~~~~a~~~~~~m~~~g~~~~ 161 (613)
...+..|+.+.-.++.+.+.+.|..++
T Consensus 43 h~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 43 YDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 333444444444444555555554443
No 304
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=21.74 E-value=3.1e+02 Score=21.96 Aligned_cols=67 Identities=10% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcC
Q 007193 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353 (613)
Q Consensus 286 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 353 (613)
.....+-+.+.+.|.+ ...--..++..+...+..-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 9 ~~~~~~~~~l~~~g~r-~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 9 SILERLRMSIKKNGLK-NSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHHHHHHCC---CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
No 305
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=21.51 E-value=63 Score=28.05 Aligned_cols=7 Identities=29% Similarity=0.501 Sum_probs=2.9
Q ss_pred HhcCCHH
Q 007193 173 AKAGQVA 179 (613)
Q Consensus 173 ~~~g~~~ 179 (613)
+..|+.+
T Consensus 117 ~~~~~~~ 123 (240)
T 3eu9_A 117 AQFGHTS 123 (240)
T ss_dssp HHTTCHH
T ss_pred HHcCHHH
Confidence 3444433
No 306
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=20.86 E-value=1.5e+02 Score=22.94 Aligned_cols=42 Identities=10% Similarity=-0.124 Sum_probs=28.9
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007193 396 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 396 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 437 (613)
+|+.+....+.|+...-..-+..+...++++.|.+++-.+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455556656656555545555666788899999999987765
No 307
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=20.68 E-value=90 Score=20.59 Aligned_cols=24 Identities=8% Similarity=0.087 Sum_probs=20.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchH
Q 007193 38 QGRISECIDLLEDMERKGLLDMDK 61 (613)
Q Consensus 38 ~g~~~~A~~l~~~m~~~~~~~~~~ 61 (613)
.-+++.|...|.++...|-+|...
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 349999999999999888777654
No 308
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=20.66 E-value=2.2e+02 Score=22.76 Aligned_cols=57 Identities=7% Similarity=0.118 Sum_probs=25.2
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007193 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (613)
Q Consensus 260 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 318 (613)
+.+.|+.++.. -..++..+...+ .-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 10 L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 10 LRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 33444444322 223333333333 3345555555555544444444444444444444
Done!