Query 007194
Match_columns 613
No_of_seqs 784 out of 3931
Neff 10.7
Searched_HMMs 46136
Date Thu Mar 28 20:13:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007194.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007194hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 2.8E-91 6.2E-96 758.9 72.9 584 24-607 369-952 (1060)
2 PLN03077 Protein ECB2; Provisi 100.0 3.1E-69 6.7E-74 598.7 46.5 508 31-561 57-651 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 5.2E-67 1.1E-71 580.9 52.6 543 27-609 150-770 (857)
4 PLN03218 maturation of RBCL 1; 100.0 4.5E-63 9.7E-68 538.6 58.4 464 32-503 413-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 1.5E-62 3.3E-67 532.6 48.5 500 67-609 93-607 (697)
6 PLN03081 pentatricopeptide (PP 100.0 1.7E-59 3.6E-64 508.9 48.5 461 27-504 121-612 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.2E-26 2.6E-31 263.5 61.8 517 33-570 337-870 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.5E-26 5.4E-31 260.9 61.6 511 31-562 369-898 (899)
9 PRK11788 tetratricopeptide rep 99.9 2.8E-20 6.1E-25 189.6 36.2 299 101-407 44-351 (389)
10 PRK11788 tetratricopeptide rep 99.9 6.1E-20 1.3E-24 187.1 36.2 303 134-445 42-354 (389)
11 PRK11447 cellulose synthase su 99.9 5E-17 1.1E-21 185.9 61.7 533 21-573 58-750 (1157)
12 PRK11447 cellulose synthase su 99.9 7.7E-18 1.7E-22 192.6 50.5 388 34-438 278-700 (1157)
13 PRK15174 Vi polysaccharide exp 99.9 4.1E-17 8.8E-22 174.6 47.8 327 99-437 49-380 (656)
14 PRK15174 Vi polysaccharide exp 99.9 4E-17 8.8E-22 174.6 45.2 321 71-402 52-380 (656)
15 TIGR00990 3a0801s09 mitochondr 99.9 1.4E-16 3E-21 171.1 49.4 393 33-438 135-571 (615)
16 KOG4626 O-linked N-acetylgluco 99.9 4.1E-18 9E-23 165.6 33.5 417 31-470 54-478 (966)
17 KOG4626 O-linked N-acetylgluco 99.9 4E-18 8.7E-23 165.7 33.0 388 37-444 94-489 (966)
18 PRK10049 pgaA outer membrane p 99.8 1.7E-16 3.6E-21 173.6 46.5 403 27-444 16-460 (765)
19 KOG4422 Uncharacterized conser 99.8 1E-15 2.2E-20 142.9 41.7 399 33-441 123-593 (625)
20 TIGR00990 3a0801s09 mitochondr 99.8 1.3E-15 2.9E-20 163.6 49.1 346 97-454 132-552 (615)
21 PRK14574 hmsH outer membrane p 99.8 1E-14 2.2E-19 156.6 49.9 441 21-474 30-516 (822)
22 PRK10049 pgaA outer membrane p 99.8 5.8E-15 1.3E-19 161.6 44.8 391 67-470 21-455 (765)
23 PRK09782 bacteriophage N4 rece 99.8 1.1E-12 2.3E-17 144.1 55.1 281 244-535 386-711 (987)
24 PRK09782 bacteriophage N4 rece 99.7 6.4E-12 1.4E-16 138.1 56.8 446 32-493 189-730 (987)
25 KOG2002 TPR-containing nuclear 99.7 2E-13 4.3E-18 140.4 41.2 467 20-502 265-804 (1018)
26 PRK14574 hmsH outer membrane p 99.7 2E-12 4.4E-17 139.0 48.1 398 68-474 41-482 (822)
27 KOG2003 TPR repeat-containing 99.7 1.5E-13 3.2E-18 129.4 30.5 409 37-456 213-706 (840)
28 KOG2002 TPR-containing nuclear 99.7 2.4E-12 5.1E-17 132.7 41.7 426 18-454 226-726 (1018)
29 KOG4422 Uncharacterized conser 99.7 1.2E-11 2.5E-16 116.2 40.2 324 91-421 115-480 (625)
30 KOG1915 Cell cycle control pro 99.6 6.4E-10 1.4E-14 106.1 44.7 416 37-468 85-533 (677)
31 KOG2076 RNA polymerase III tra 99.6 3.1E-11 6.7E-16 123.8 38.7 366 31-401 145-553 (895)
32 PF13429 TPR_15: Tetratricopep 99.6 1.3E-14 2.8E-19 140.0 12.6 259 99-365 15-274 (280)
33 KOG1155 Anaphase-promoting com 99.6 1.4E-10 3E-15 110.4 38.0 256 135-401 235-493 (559)
34 KOG2076 RNA polymerase III tra 99.6 1.1E-10 2.5E-15 119.8 39.4 360 72-436 150-553 (895)
35 PF13429 TPR_15: Tetratricopep 99.6 2.7E-14 5.9E-19 137.8 13.0 257 32-296 15-275 (280)
36 TIGR00540 hemY_coli hemY prote 99.6 3.3E-11 7.1E-16 122.5 35.2 290 73-366 96-397 (409)
37 PRK10747 putative protoheme IX 99.5 4.6E-11 1E-15 120.8 34.6 250 138-399 129-386 (398)
38 PRK10747 putative protoheme IX 99.5 5.2E-11 1.1E-15 120.4 34.2 281 74-367 97-389 (398)
39 KOG1155 Anaphase-promoting com 99.5 9.8E-10 2.1E-14 104.7 39.6 331 89-437 161-494 (559)
40 KOG0495 HAT repeat protein [RN 99.5 3.6E-09 7.8E-14 104.9 44.6 395 91-508 478-876 (913)
41 COG2956 Predicted N-acetylgluc 99.5 2.6E-10 5.6E-15 103.7 33.7 221 105-333 48-278 (389)
42 KOG0495 HAT repeat protein [RN 99.5 1.7E-08 3.7E-13 100.3 47.5 416 24-456 375-799 (913)
43 TIGR00540 hemY_coli hemY prote 99.5 1.5E-10 3.3E-15 117.7 35.1 286 104-399 96-395 (409)
44 KOG2003 TPR repeat-containing 99.5 1.8E-10 3.8E-15 109.0 31.6 421 37-467 161-685 (840)
45 KOG1126 DNA-binding cell divis 99.5 3.4E-11 7.4E-16 119.8 26.2 283 142-438 334-620 (638)
46 KOG1126 DNA-binding cell divis 99.5 3.6E-11 7.7E-16 119.7 25.1 263 177-453 334-600 (638)
47 COG2956 Predicted N-acetylgluc 99.5 3.9E-10 8.4E-15 102.6 29.4 271 175-453 48-324 (389)
48 KOG1915 Cell cycle control pro 99.4 3.9E-08 8.4E-13 94.2 42.4 408 28-450 106-546 (677)
49 COG3071 HemY Uncharacterized e 99.4 2.7E-09 5.9E-14 100.3 32.6 285 105-401 97-388 (400)
50 COG3071 HemY Uncharacterized e 99.4 7.3E-09 1.6E-13 97.4 33.5 286 140-437 97-389 (400)
51 KOG0547 Translocase of outer m 99.4 1.1E-08 2.3E-13 98.4 34.4 377 35-437 125-565 (606)
52 KOG1173 Anaphase-promoting com 99.4 2.4E-09 5.1E-14 104.8 30.6 371 70-454 150-532 (611)
53 KOG2047 mRNA splicing factor [ 99.3 9.6E-07 2.1E-11 88.0 47.6 409 33-451 110-591 (835)
54 KOG4318 Bicoid mRNA stability 99.3 6.2E-10 1.3E-14 113.9 25.8 251 115-389 13-286 (1088)
55 PF13041 PPR_2: PPR repeat fam 99.3 4.1E-12 8.8E-17 86.0 6.5 50 372-421 1-50 (50)
56 PRK12370 invasion protein regu 99.3 2.1E-09 4.5E-14 113.7 30.0 248 74-334 274-536 (553)
57 TIGR02521 type_IV_pilW type IV 99.3 3.2E-09 7E-14 99.5 27.3 196 129-329 33-228 (234)
58 PF13041 PPR_2: PPR repeat fam 99.3 8.8E-12 1.9E-16 84.4 6.7 50 160-209 1-50 (50)
59 TIGR02521 type_IV_pilW type IV 99.3 4.8E-09 1E-13 98.3 27.2 199 235-437 32-231 (234)
60 PRK12370 invasion protein regu 99.3 8E-09 1.7E-13 109.3 31.4 232 212-454 276-519 (553)
61 KOG4318 Bicoid mRNA stability 99.3 2.6E-10 5.7E-15 116.5 18.7 253 148-425 11-287 (1088)
62 KOG1173 Anaphase-promoting com 99.3 3.3E-08 7.2E-13 96.9 32.3 287 122-418 239-531 (611)
63 KOG1129 TPR repeat-containing 99.2 5.5E-09 1.2E-13 95.2 22.4 229 201-437 227-457 (478)
64 KOG2376 Signal recognition par 99.2 5.5E-06 1.2E-10 82.2 43.5 415 31-470 18-519 (652)
65 PF12569 NARP1: NMDA receptor- 99.2 2E-07 4.3E-12 95.4 34.3 290 136-437 13-333 (517)
66 KOG0547 Translocase of outer m 99.2 5.3E-07 1.1E-11 87.1 34.5 320 97-437 120-490 (606)
67 KOG1156 N-terminal acetyltrans 99.2 3.6E-06 7.7E-11 84.4 41.2 385 37-440 19-470 (700)
68 KOG1174 Anaphase-promoting com 99.1 4.5E-06 9.7E-11 79.1 38.7 397 29-437 47-499 (564)
69 PF12569 NARP1: NMDA receptor- 99.1 1.8E-07 3.8E-12 95.8 31.9 286 73-366 16-332 (517)
70 KOG1129 TPR repeat-containing 99.1 5.9E-09 1.3E-13 95.0 18.5 238 161-408 222-461 (478)
71 KOG3785 Uncharacterized conser 99.1 1.4E-06 2.9E-11 80.8 32.1 443 32-500 29-518 (557)
72 KOG1840 Kinesin light chain [C 99.1 1.4E-07 3E-12 95.3 28.0 240 197-436 199-477 (508)
73 KOG1840 Kinesin light chain [C 99.1 2.5E-07 5.5E-12 93.5 29.7 169 127-295 199-393 (508)
74 KOG1156 N-terminal acetyltrans 99.0 9.8E-06 2.1E-10 81.3 38.0 328 93-435 144-508 (700)
75 PRK11189 lipoprotein NlpI; Pro 99.0 9.1E-07 2E-11 85.7 29.1 219 211-439 40-266 (296)
76 PRK11189 lipoprotein NlpI; Pro 99.0 2.9E-07 6.3E-12 89.1 25.2 205 93-309 65-275 (296)
77 COG3063 PilF Tfp pilus assembl 99.0 1E-06 2.2E-11 77.2 24.9 199 130-333 38-236 (250)
78 KOG2047 mRNA splicing factor [ 99.0 7.6E-05 1.7E-09 75.0 46.4 466 9-503 12-585 (835)
79 KOG4162 Predicted calmodulin-b 98.9 1.5E-05 3.3E-10 81.6 35.5 393 38-437 297-782 (799)
80 cd05804 StaR_like StaR_like; a 98.9 1E-05 2.3E-10 81.2 34.8 88 205-295 122-212 (355)
81 cd05804 StaR_like StaR_like; a 98.9 1.3E-05 2.7E-10 80.7 35.2 305 127-437 6-335 (355)
82 COG3063 PilF Tfp pilus assembl 98.9 1.8E-06 4E-11 75.6 24.5 196 238-437 39-235 (250)
83 KOG3785 Uncharacterized conser 98.9 1.9E-05 4.2E-10 73.3 32.3 404 27-456 57-506 (557)
84 KOG1174 Anaphase-promoting com 98.9 5.8E-05 1.2E-09 71.8 34.9 291 105-408 209-503 (564)
85 KOG2376 Signal recognition par 98.9 5.1E-05 1.1E-09 75.5 35.3 383 32-435 53-517 (652)
86 KOG0624 dsRNA-activated protei 98.8 6E-05 1.3E-09 69.9 32.4 327 58-437 35-369 (504)
87 PRK04841 transcriptional regul 98.8 0.0001 2.2E-09 84.1 41.7 337 102-438 384-760 (903)
88 PF04733 Coatomer_E: Coatomer 98.7 5.5E-07 1.2E-11 85.9 16.9 80 250-331 183-263 (290)
89 KOG3616 Selective LIM binding 98.7 6.7E-05 1.4E-09 76.2 31.1 193 135-363 740-932 (1636)
90 KOG0548 Molecular co-chaperone 98.7 0.00012 2.5E-09 72.4 31.9 385 32-437 9-454 (539)
91 PRK04841 transcriptional regul 98.7 0.00023 4.9E-09 81.3 39.1 332 72-403 385-760 (903)
92 PF04733 Coatomer_E: Coatomer 98.7 1.2E-06 2.6E-11 83.6 17.0 223 164-402 37-264 (290)
93 PF12854 PPR_1: PPR repeat 98.7 3.4E-08 7.5E-13 59.8 4.2 32 157-188 2-33 (34)
94 KOG4162 Predicted calmodulin-b 98.7 0.00021 4.6E-09 73.5 33.2 361 35-402 333-782 (799)
95 PF12854 PPR_1: PPR repeat 98.7 3.3E-08 7.2E-13 59.9 3.8 32 369-400 2-33 (34)
96 KOG0624 dsRNA-activated protei 98.6 0.00015 3.3E-09 67.4 28.2 306 20-334 33-371 (504)
97 KOG1127 TPR repeat-containing 98.6 0.00012 2.6E-09 77.2 30.6 149 38-189 471-623 (1238)
98 PLN02789 farnesyltranstransfer 98.6 0.00011 2.3E-09 71.3 28.9 212 97-316 42-267 (320)
99 KOG1070 rRNA processing protei 98.6 4.1E-05 8.8E-10 83.3 26.9 231 194-429 1455-1691(1710)
100 KOG4340 Uncharacterized conser 98.5 0.00029 6.2E-09 64.3 27.3 188 30-226 15-207 (459)
101 KOG1128 Uncharacterized conser 98.5 7.9E-06 1.7E-10 83.1 19.4 216 129-367 400-615 (777)
102 KOG0985 Vesicle coat protein c 98.5 0.001 2.2E-08 70.5 34.3 244 139-433 1060-1303(1666)
103 KOG1914 mRNA cleavage and poly 98.5 0.0015 3.2E-08 64.8 34.4 386 58-452 17-480 (656)
104 PLN02789 farnesyltranstransfer 98.5 0.00024 5.2E-09 68.9 28.2 209 135-351 45-267 (320)
105 KOG1128 Uncharacterized conser 98.5 1.1E-05 2.3E-10 82.2 18.6 212 167-401 403-614 (777)
106 KOG3617 WD40 and TPR repeat-co 98.5 0.0017 3.8E-08 67.3 34.1 71 36-116 811-882 (1416)
107 KOG3616 Selective LIM binding 98.5 0.00055 1.2E-08 69.9 29.7 108 244-364 742-849 (1636)
108 KOG1125 TPR repeat-containing 98.5 3.5E-05 7.5E-10 76.6 21.0 250 138-394 296-562 (579)
109 KOG1914 mRNA cleavage and poly 98.5 0.0022 4.7E-08 63.7 38.5 423 27-455 18-521 (656)
110 KOG1070 rRNA processing protei 98.5 0.00014 3E-09 79.3 26.7 207 91-302 1457-1667(1710)
111 KOG1125 TPR repeat-containing 98.4 6.1E-05 1.3E-09 74.9 21.2 252 171-432 294-565 (579)
112 TIGR03302 OM_YfiO outer membra 98.4 4.5E-05 9.8E-10 71.5 20.1 185 89-298 30-232 (235)
113 COG5010 TadD Flp pilus assembl 98.4 6.6E-05 1.4E-09 67.5 19.5 153 100-258 74-226 (257)
114 KOG0985 Vesicle coat protein c 98.4 0.0052 1.1E-07 65.4 36.7 321 24-399 983-1304(1666)
115 KOG4340 Uncharacterized conser 98.4 0.00036 7.7E-09 63.7 23.9 317 95-434 13-335 (459)
116 TIGR03302 OM_YfiO outer membra 98.4 9.7E-05 2.1E-09 69.3 21.3 64 126-191 32-99 (235)
117 KOG0548 Molecular co-chaperone 98.3 0.0049 1.1E-07 61.3 34.2 380 70-472 11-456 (539)
118 PRK10370 formate-dependent nit 98.3 0.00016 3.4E-09 65.2 20.1 115 319-437 54-172 (198)
119 KOG3081 Vesicle coat complex C 98.3 0.00039 8.4E-09 62.6 21.7 137 134-283 115-255 (299)
120 PRK10370 formate-dependent nit 98.3 0.00022 4.9E-09 64.2 20.8 115 250-367 55-172 (198)
121 COG5010 TadD Flp pilus assembl 98.3 0.00026 5.7E-09 63.7 20.6 155 203-363 72-226 (257)
122 PRK15359 type III secretion sy 98.3 6.4E-05 1.4E-09 64.0 15.5 95 95-191 27-121 (144)
123 PRK14720 transcript cleavage f 98.2 0.00099 2.2E-08 72.2 27.3 239 89-385 28-268 (906)
124 COG4783 Putative Zn-dependent 98.2 0.0053 1.1E-07 60.5 29.3 241 25-298 202-454 (484)
125 KOG3617 WD40 and TPR repeat-co 98.2 0.0042 9.1E-08 64.7 29.2 242 89-366 723-994 (1416)
126 PRK14720 transcript cleavage f 98.2 0.0014 3.1E-08 71.1 27.3 259 122-442 25-288 (906)
127 COG4783 Putative Zn-dependent 98.2 0.0032 7E-08 61.9 26.8 217 213-453 253-471 (484)
128 PRK15359 type III secretion sy 98.2 0.00013 2.7E-09 62.1 15.6 90 311-402 31-120 (144)
129 PRK15179 Vi polysaccharide bio 98.1 0.0015 3.3E-08 70.1 26.1 163 230-402 82-244 (694)
130 TIGR00756 PPR pentatricopeptid 98.1 4.5E-06 9.7E-11 51.4 4.2 33 376-408 2-34 (35)
131 KOG1127 TPR repeat-containing 98.1 0.023 5E-07 60.8 33.4 184 142-332 473-658 (1238)
132 PRK15179 Vi polysaccharide bio 98.1 0.00042 9.2E-09 74.2 20.9 233 129-387 30-268 (694)
133 KOG3081 Vesicle coat complex C 98.1 0.0071 1.5E-07 54.8 24.3 84 316-403 149-236 (299)
134 TIGR00756 PPR pentatricopeptid 98.0 6.3E-06 1.4E-10 50.7 3.9 33 164-196 2-34 (35)
135 TIGR02552 LcrH_SycD type III s 98.0 0.00024 5.2E-09 59.9 14.9 87 314-402 27-113 (135)
136 TIGR02552 LcrH_SycD type III s 98.0 0.00032 7E-09 59.2 15.1 94 130-225 20-113 (135)
137 PF13812 PPR_3: Pentatricopept 98.0 9.5E-06 2.1E-10 49.5 3.8 32 376-407 3-34 (34)
138 PF13812 PPR_3: Pentatricopept 97.9 1.6E-05 3.5E-10 48.5 4.1 33 163-195 2-34 (34)
139 KOG3060 Uncharacterized conser 97.9 0.017 3.6E-07 52.1 23.8 187 106-298 26-220 (289)
140 KOG3060 Uncharacterized conser 97.9 0.017 3.7E-07 52.0 23.2 86 246-333 98-183 (289)
141 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00083 1.8E-08 66.6 17.0 125 94-225 171-296 (395)
142 KOG2053 Mitochondrial inherita 97.9 0.058 1.3E-06 57.3 41.3 224 35-264 19-256 (932)
143 KOG2053 Mitochondrial inherita 97.8 0.07 1.5E-06 56.7 42.9 405 21-436 39-534 (932)
144 PF10037 MRP-S27: Mitochondria 97.8 0.00033 7.1E-09 69.6 13.1 119 266-384 63-183 (429)
145 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.0011 2.4E-08 65.7 15.8 125 165-297 172-296 (395)
146 PF10037 MRP-S27: Mitochondria 97.7 0.00069 1.5E-08 67.4 14.0 124 194-317 63-186 (429)
147 PF09976 TPR_21: Tetratricopep 97.7 0.0017 3.7E-08 55.4 14.6 20 243-262 57-76 (145)
148 PF01535 PPR: PPR repeat; Int 97.7 3.7E-05 8.1E-10 45.6 3.0 29 376-404 2-30 (31)
149 PF09976 TPR_21: Tetratricopep 97.7 0.0035 7.5E-08 53.5 16.2 85 170-258 56-142 (145)
150 PF01535 PPR: PPR repeat; Int 97.7 5E-05 1.1E-09 45.1 3.2 29 164-192 2-30 (31)
151 PF08579 RPM2: Mitochondrial r 97.7 0.00077 1.7E-08 52.4 10.2 78 97-174 30-116 (120)
152 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0031 6.7E-08 51.6 13.9 19 205-223 47-65 (119)
153 cd00189 TPR Tetratricopeptide 97.6 0.0017 3.7E-08 50.2 11.7 90 98-189 6-95 (100)
154 PF08579 RPM2: Mitochondrial r 97.5 0.0014 3E-08 51.0 10.0 79 131-209 29-116 (120)
155 TIGR02795 tol_pal_ybgF tol-pal 97.4 0.0072 1.6E-07 49.4 14.0 100 200-299 5-106 (119)
156 cd00189 TPR Tetratricopeptide 97.4 0.0038 8.2E-08 48.2 11.9 8 212-219 15-22 (100)
157 PF06239 ECSIT: Evolutionarily 97.4 0.0028 6E-08 55.9 11.4 105 89-212 44-153 (228)
158 PRK15363 pathogenicity island 97.3 0.0038 8.1E-08 52.5 11.3 92 27-120 36-131 (157)
159 KOG2041 WD40 repeat protein [G 97.3 0.12 2.7E-06 53.2 23.5 333 77-451 679-1064(1189)
160 PF06239 ECSIT: Evolutionarily 97.3 0.0053 1.2E-07 54.2 12.4 105 231-354 44-153 (228)
161 PF05843 Suf: Suppressor of fo 97.3 0.0066 1.4E-07 58.1 14.0 129 199-333 3-136 (280)
162 PLN03088 SGT1, suppressor of 97.3 0.0074 1.6E-07 60.1 14.6 86 315-402 13-98 (356)
163 PF05843 Suf: Suppressor of fo 97.3 0.0081 1.8E-07 57.5 14.4 130 164-298 3-136 (280)
164 PLN03088 SGT1, suppressor of 97.2 0.01 2.2E-07 59.1 15.0 89 101-191 11-99 (356)
165 PF14559 TPR_19: Tetratricopep 97.2 0.0014 3E-08 47.4 6.5 62 35-98 1-64 (68)
166 PRK10866 outer membrane biogen 97.2 0.11 2.3E-06 48.6 20.4 177 240-436 38-239 (243)
167 PRK15363 pathogenicity island 97.2 0.016 3.5E-07 48.8 13.1 94 95-190 38-131 (157)
168 PRK02603 photosystem I assembl 97.1 0.03 6.6E-07 49.3 15.5 61 237-297 38-100 (172)
169 PRK10153 DNA-binding transcrip 97.1 0.036 7.8E-07 57.8 18.0 62 374-437 420-481 (517)
170 PF12895 Apc3: Anaphase-promot 97.1 0.0014 3E-08 49.8 5.6 20 168-187 31-50 (84)
171 KOG2041 WD40 repeat protein [G 97.0 0.53 1.2E-05 48.8 26.1 320 74-437 747-1085(1189)
172 PRK02603 photosystem I assembl 97.0 0.035 7.5E-07 49.0 15.0 93 91-184 34-128 (172)
173 PF12895 Apc3: Anaphase-promot 97.0 0.0014 2.9E-08 49.9 5.3 19 345-363 31-49 (84)
174 PRK10153 DNA-binding transcrip 97.0 0.053 1.2E-06 56.5 18.1 146 263-413 331-490 (517)
175 PRK10866 outer membrane biogen 97.0 0.16 3.4E-06 47.4 19.4 58 344-401 180-239 (243)
176 CHL00033 ycf3 photosystem I as 97.0 0.03 6.4E-07 49.2 14.0 80 270-350 36-117 (168)
177 CHL00033 ycf3 photosystem I as 96.9 0.017 3.7E-07 50.7 12.3 27 236-262 74-100 (168)
178 KOG0553 TPR repeat-containing 96.9 0.012 2.7E-07 54.4 11.4 98 315-416 92-189 (304)
179 KOG0553 TPR repeat-containing 96.9 0.01 2.2E-07 54.9 10.6 81 75-156 95-178 (304)
180 PF14559 TPR_19: Tetratricopep 96.8 0.0052 1.1E-07 44.4 6.6 51 140-191 4-54 (68)
181 PF12688 TPR_5: Tetratrico pep 96.8 0.061 1.3E-06 43.6 13.3 91 170-260 9-101 (120)
182 PF14938 SNAP: Soluble NSF att 96.8 0.26 5.6E-06 47.4 20.0 26 272-297 158-183 (282)
183 PF12688 TPR_5: Tetratrico pep 96.8 0.079 1.7E-06 43.0 13.7 55 278-332 10-66 (120)
184 KOG0550 Molecular chaperone (D 96.7 0.52 1.1E-05 45.9 20.7 176 232-438 166-350 (486)
185 KOG2796 Uncharacterized conser 96.7 0.51 1.1E-05 43.1 19.1 133 129-264 179-316 (366)
186 COG4235 Cytochrome c biogenesi 96.6 0.059 1.3E-06 50.3 13.6 100 124-225 153-255 (287)
187 PF14938 SNAP: Soluble NSF att 96.6 0.16 3.4E-06 48.9 17.2 128 311-454 101-245 (282)
188 COG4235 Cytochrome c biogenesi 96.6 0.12 2.6E-06 48.3 15.1 100 336-438 153-256 (287)
189 PF13432 TPR_16: Tetratricopep 96.6 0.01 2.2E-07 42.4 6.6 54 348-402 6-59 (65)
190 KOG1538 Uncharacterized conser 96.5 0.28 6.1E-06 50.3 18.0 43 40-86 615-657 (1081)
191 PF13432 TPR_16: Tetratricopep 96.5 0.012 2.7E-07 41.9 6.6 50 138-188 8-57 (65)
192 PF13414 TPR_11: TPR repeat; P 96.5 0.013 2.9E-07 42.3 6.9 61 235-296 4-65 (69)
193 PF13525 YfiO: Outer membrane 96.3 0.59 1.3E-05 42.4 18.2 168 241-429 12-198 (203)
194 PF04840 Vps16_C: Vps16, C-ter 96.3 1.2 2.5E-05 43.5 28.8 109 271-399 179-287 (319)
195 PF13414 TPR_11: TPR repeat; P 96.3 0.02 4.4E-07 41.3 7.0 61 93-154 4-65 (69)
196 KOG2796 Uncharacterized conser 96.3 0.87 1.9E-05 41.6 24.0 142 271-415 179-325 (366)
197 KOG1538 Uncharacterized conser 96.2 0.15 3.2E-06 52.3 14.2 214 125-367 554-801 (1081)
198 PRK10803 tol-pal system protei 96.1 0.1 2.2E-06 49.2 12.3 60 239-298 185-246 (263)
199 PF03704 BTAD: Bacterial trans 96.1 0.26 5.7E-06 41.9 14.1 70 236-306 64-138 (146)
200 KOG1130 Predicted G-alpha GTPa 96.1 0.13 2.8E-06 49.8 12.7 264 102-366 27-342 (639)
201 PRK10803 tol-pal system protei 96.1 0.11 2.5E-06 48.9 12.4 98 127-226 143-246 (263)
202 PF12921 ATP13: Mitochondrial 96.0 0.11 2.4E-06 42.6 10.6 52 192-244 47-98 (126)
203 PF13525 YfiO: Outer membrane 96.0 0.98 2.1E-05 40.9 17.9 46 345-392 147-196 (203)
204 PF04840 Vps16_C: Vps16, C-ter 96.0 1.7 3.7E-05 42.3 29.0 107 306-432 179-285 (319)
205 KOG0550 Molecular chaperone (D 96.0 1.8 3.8E-05 42.4 24.1 258 33-298 57-350 (486)
206 PF12921 ATP13: Mitochondrial 96.0 0.15 3.2E-06 41.8 11.1 82 198-279 3-98 (126)
207 KOG1130 Predicted G-alpha GTPa 95.9 0.091 2E-06 50.8 11.0 266 135-402 25-343 (639)
208 PF03704 BTAD: Bacterial trans 95.9 0.049 1.1E-06 46.5 8.6 57 131-188 66-122 (146)
209 COG4700 Uncharacterized protei 95.8 1.1 2.4E-05 38.8 19.2 101 160-262 87-188 (251)
210 PF07079 DUF1347: Protein of u 95.8 2.3 5E-05 42.2 41.8 420 37-468 18-521 (549)
211 PF13371 TPR_9: Tetratricopept 95.8 0.067 1.5E-06 39.1 7.8 51 138-189 6-56 (73)
212 KOG3941 Intermediate in Toll s 95.7 0.17 3.7E-06 46.4 11.3 125 81-224 54-186 (406)
213 PF13371 TPR_9: Tetratricopept 95.7 0.085 1.8E-06 38.5 8.0 57 100-157 3-59 (73)
214 PRK15331 chaperone protein Sic 95.7 0.17 3.7E-06 43.0 10.5 83 36-120 48-133 (165)
215 PF13281 DUF4071: Domain of un 95.6 2.7 5.8E-05 41.5 20.2 28 271-298 307-334 (374)
216 KOG2280 Vacuolar assembly/sort 95.5 4 8.6E-05 43.2 25.4 25 92-116 507-531 (829)
217 COG4700 Uncharacterized protei 95.3 1.7 3.6E-05 37.7 18.5 128 301-432 86-216 (251)
218 PF04053 Coatomer_WDAD: Coatom 95.1 0.83 1.8E-05 46.7 15.3 166 24-222 260-427 (443)
219 KOG2114 Vacuolar assembly/sort 95.1 4.9 0.00011 43.2 20.6 146 32-186 341-487 (933)
220 COG3118 Thioredoxin domain-con 95.0 3.3 7.1E-05 38.9 18.1 143 138-285 145-288 (304)
221 COG4649 Uncharacterized protei 94.8 1.1 2.4E-05 38.2 12.6 121 35-155 68-195 (221)
222 smart00299 CLH Clathrin heavy 94.8 2.1 4.5E-05 36.0 15.9 83 133-223 13-95 (140)
223 PF13281 DUF4071: Domain of un 94.8 4.8 0.0001 39.8 19.7 32 407-438 303-334 (374)
224 PF04053 Coatomer_WDAD: Coatom 94.7 1.3 2.8E-05 45.3 15.5 131 129-294 297-427 (443)
225 PF13424 TPR_12: Tetratricopep 94.7 0.11 2.4E-06 38.5 6.0 62 375-436 6-73 (78)
226 PRK15331 chaperone protein Sic 94.5 2.7 5.8E-05 35.9 15.1 90 276-367 44-133 (165)
227 COG3898 Uncharacterized membra 94.5 5.1 0.00011 39.1 32.2 279 74-368 97-392 (531)
228 COG3118 Thioredoxin domain-con 94.5 4.3 9.4E-05 38.1 17.3 143 171-319 143-287 (304)
229 KOG3941 Intermediate in Toll s 94.5 0.32 7E-06 44.7 9.3 117 124-261 64-186 (406)
230 smart00299 CLH Clathrin heavy 94.4 2.6 5.6E-05 35.4 15.5 125 238-385 11-136 (140)
231 PF13424 TPR_12: Tetratricopep 94.4 0.12 2.6E-06 38.3 5.7 62 340-401 6-73 (78)
232 COG5107 RNA14 Pre-mRNA 3'-end 94.3 6.3 0.00014 39.2 33.2 145 304-454 397-545 (660)
233 PLN03098 LPA1 LOW PSII ACCUMUL 94.1 1.6 3.4E-05 43.8 14.0 63 91-155 74-140 (453)
234 PLN03098 LPA1 LOW PSII ACCUMUL 94.0 1.7 3.7E-05 43.6 13.9 63 234-297 75-140 (453)
235 PF10300 DUF3808: Protein of u 93.9 3.2 6.9E-05 43.1 16.6 179 145-332 175-375 (468)
236 PF09205 DUF1955: Domain of un 93.3 3.8 8.2E-05 33.4 13.6 62 307-369 89-150 (161)
237 PRK11906 transcriptional regul 93.3 8.7 0.00019 38.8 17.5 143 75-222 272-432 (458)
238 KOG0543 FKBP-type peptidyl-pro 93.2 1.8 3.9E-05 42.4 12.4 60 238-298 261-320 (397)
239 PF09205 DUF1955: Domain of un 93.1 4 8.7E-05 33.2 12.9 84 351-440 68-151 (161)
240 PF10300 DUF3808: Protein of u 93.1 5.8 0.00013 41.2 17.0 26 237-262 191-216 (468)
241 KOG0543 FKBP-type peptidyl-pro 93.1 2.1 4.5E-05 42.0 12.6 123 242-366 216-353 (397)
242 KOG2610 Uncharacterized conser 92.6 3.9 8.4E-05 39.0 13.1 115 175-294 116-234 (491)
243 COG3629 DnrI DNA-binding trans 92.5 1.6 3.5E-05 41.1 10.7 77 129-206 155-236 (280)
244 PF13512 TPR_18: Tetratricopep 92.4 4 8.7E-05 34.0 11.7 77 99-175 17-95 (142)
245 KOG2610 Uncharacterized conser 92.3 3.8 8.3E-05 39.0 12.7 152 209-364 115-272 (491)
246 PF08631 SPO22: Meiosis protei 92.2 11 0.00025 36.0 25.3 62 199-263 86-150 (278)
247 KOG1941 Acetylcholine receptor 92.1 10 0.00022 36.7 15.4 127 239-365 127-272 (518)
248 COG5107 RNA14 Pre-mRNA 3'-end 92.1 14 0.0003 36.9 36.6 110 339-452 397-510 (660)
249 PF13428 TPR_14: Tetratricopep 92.0 0.64 1.4E-05 29.8 5.5 26 238-263 5-30 (44)
250 PF13512 TPR_18: Tetratricopep 91.8 4.2 9.1E-05 33.9 11.2 52 317-368 23-76 (142)
251 KOG4555 TPR repeat-containing 91.8 3.7 8E-05 33.3 10.3 90 348-439 52-145 (175)
252 COG4105 ComL DNA uptake lipopr 91.7 11 0.00024 34.8 20.3 54 346-400 174-230 (254)
253 COG3629 DnrI DNA-binding trans 91.6 2.4 5.1E-05 40.0 10.7 77 236-313 155-236 (280)
254 COG3898 Uncharacterized membra 91.6 15 0.00032 36.1 31.3 287 140-443 97-397 (531)
255 PF09613 HrpB1_HrpK: Bacterial 91.5 5.7 0.00012 33.8 11.9 50 37-88 22-71 (160)
256 PRK11906 transcriptional regul 91.4 18 0.00038 36.7 17.9 76 323-401 323-399 (458)
257 KOG4555 TPR repeat-containing 91.4 6.8 0.00015 31.9 11.8 91 101-192 52-145 (175)
258 PF13170 DUF4003: Protein of u 91.3 15 0.00032 35.5 17.4 131 178-310 78-223 (297)
259 COG1729 Uncharacterized protei 91.3 3.6 7.8E-05 38.2 11.4 59 240-298 184-244 (262)
260 COG1729 Uncharacterized protei 91.2 3.5 7.7E-05 38.3 11.2 61 203-263 184-244 (262)
261 PF07035 Mic1: Colon cancer-as 90.9 9.9 0.00021 32.8 15.3 133 183-332 15-148 (167)
262 PF04184 ST7: ST7 protein; In 90.7 21 0.00046 36.3 17.3 60 202-262 264-323 (539)
263 KOG1920 IkappaB kinase complex 90.6 35 0.00077 38.7 21.0 110 168-297 914-1027(1265)
264 COG0457 NrfG FOG: TPR repeat [ 90.5 13 0.00028 33.6 30.1 200 235-437 60-264 (291)
265 KOG1585 Protein required for f 90.5 14 0.0003 33.9 17.4 206 94-327 33-250 (308)
266 KOG1941 Acetylcholine receptor 90.4 9.9 0.00021 36.8 13.5 166 271-436 85-273 (518)
267 PF10602 RPN7: 26S proteasome 90.4 6.2 0.00014 34.7 11.8 61 129-189 38-100 (177)
268 PF13428 TPR_14: Tetratricopep 90.3 1.1 2.5E-05 28.6 5.4 27 95-121 4-30 (44)
269 PF04184 ST7: ST7 protein; In 90.2 24 0.00051 36.0 17.2 60 308-367 263-323 (539)
270 KOG2280 Vacuolar assembly/sort 89.5 33 0.00071 36.8 32.3 301 120-436 425-771 (829)
271 KOG1920 IkappaB kinase complex 89.5 43 0.00093 38.1 20.3 113 302-434 933-1051(1265)
272 PF04097 Nic96: Nup93/Nic96; 89.0 24 0.00053 38.1 17.3 46 552-600 522-567 (613)
273 PF07079 DUF1347: Protein of u 88.9 27 0.0006 35.1 36.7 400 39-451 59-532 (549)
274 KOG0276 Vesicle coat complex C 88.5 4.4 9.6E-05 41.8 10.3 157 29-222 590-746 (794)
275 COG4785 NlpI Lipoprotein NlpI, 87.8 20 0.00044 32.2 15.6 178 248-438 79-266 (297)
276 KOG2066 Vacuolar assembly/sort 87.8 44 0.00096 36.1 28.8 151 31-189 362-532 (846)
277 PF13170 DUF4003: Protein of u 87.4 29 0.00062 33.5 21.1 129 286-416 79-224 (297)
278 PRK09687 putative lyase; Provi 87.4 28 0.0006 33.3 30.1 236 87-349 32-277 (280)
279 PF13176 TPR_7: Tetratricopept 87.2 1.4 3.1E-05 26.7 4.0 24 165-188 2-25 (36)
280 cd00923 Cyt_c_Oxidase_Va Cytoc 86.9 7.8 0.00017 29.6 8.3 62 390-453 23-85 (103)
281 PF13431 TPR_17: Tetratricopep 86.3 0.98 2.1E-05 27.0 2.9 24 266-289 10-33 (34)
282 PF07575 Nucleopor_Nup85: Nup8 86.2 52 0.0011 35.3 18.7 91 272-366 375-465 (566)
283 PF10602 RPN7: 26S proteasome 86.1 9.1 0.0002 33.7 10.1 27 165-191 39-65 (177)
284 PF13176 TPR_7: Tetratricopept 85.9 1.9 4.1E-05 26.1 4.1 23 272-294 2-24 (36)
285 COG4649 Uncharacterized protei 85.8 22 0.00048 30.7 13.9 19 174-192 70-88 (221)
286 COG0457 NrfG FOG: TPR repeat [ 85.5 27 0.00059 31.4 30.2 202 198-403 60-265 (291)
287 KOG4570 Uncharacterized conser 85.3 13 0.00029 35.2 10.8 105 192-298 59-164 (418)
288 COG4105 ComL DNA uptake lipopr 85.2 32 0.00069 31.9 20.0 171 244-437 44-232 (254)
289 PF07035 Mic1: Colon cancer-as 85.1 24 0.00053 30.5 15.2 134 113-262 15-148 (167)
290 KOG4570 Uncharacterized conser 85.0 14 0.0003 35.1 10.8 99 303-403 63-164 (418)
291 KOG1585 Protein required for f 85.0 31 0.00067 31.7 17.2 25 236-260 93-117 (308)
292 TIGR02561 HrpB1_HrpK type III 84.9 22 0.00047 29.9 10.8 51 37-89 22-72 (153)
293 KOG1550 Extracellular protein 84.4 62 0.0013 34.6 25.0 181 108-300 228-428 (552)
294 PF08631 SPO22: Meiosis protei 84.3 40 0.00086 32.3 27.9 161 103-269 4-192 (278)
295 PF00515 TPR_1: Tetratricopept 84.1 2.3 5E-05 25.1 3.9 26 377-402 4-29 (34)
296 KOG1586 Protein required for f 83.0 37 0.00081 31.0 12.2 24 351-374 166-189 (288)
297 PF00515 TPR_1: Tetratricopept 82.1 3.7 7.9E-05 24.2 4.2 28 410-437 2-29 (34)
298 PF02284 COX5A: Cytochrome c o 81.6 23 0.00049 27.5 11.3 61 392-454 28-89 (108)
299 PF11207 DUF2989: Protein of u 81.2 18 0.00038 32.2 9.5 21 268-288 177-197 (203)
300 PF13431 TPR_17: Tetratricopep 80.8 2.4 5.2E-05 25.3 3.0 20 162-181 13-32 (34)
301 PF09613 HrpB1_HrpK: Bacterial 80.5 36 0.00078 29.1 14.0 18 138-155 55-72 (160)
302 KOG1550 Extracellular protein 79.9 90 0.002 33.4 25.5 178 143-334 228-427 (552)
303 KOG1258 mRNA processing protei 79.4 86 0.0019 32.9 39.8 128 27-156 43-180 (577)
304 PF07719 TPR_2: Tetratricopept 79.2 4.4 9.5E-05 23.7 3.9 23 379-401 6-28 (34)
305 cd00923 Cyt_c_Oxidase_Va Cytoc 79.1 16 0.00035 28.0 7.3 45 287-331 25-69 (103)
306 TIGR02508 type_III_yscG type I 78.9 28 0.0006 26.9 8.5 85 108-200 21-105 (115)
307 KOG2114 Vacuolar assembly/sort 78.8 1.1E+02 0.0023 33.6 20.7 139 33-189 376-517 (933)
308 TIGR02561 HrpB1_HrpK type III 78.7 39 0.00084 28.5 11.3 49 104-156 22-73 (153)
309 PRK11619 lytic murein transgly 78.1 1.1E+02 0.0024 33.4 38.4 51 381-434 414-464 (644)
310 COG2976 Uncharacterized protei 78.0 37 0.00079 30.1 10.3 127 28-157 53-189 (207)
311 KOG0276 Vesicle coat complex C 78.0 33 0.00071 35.8 11.4 98 174-294 649-746 (794)
312 PF13374 TPR_10: Tetratricopep 77.5 5.4 0.00012 24.7 4.1 25 376-400 4-28 (42)
313 PF13374 TPR_10: Tetratricopep 76.9 6.3 0.00014 24.4 4.4 26 164-189 4-29 (42)
314 PF07719 TPR_2: Tetratricopept 76.1 7.3 0.00016 22.7 4.2 28 410-437 2-29 (34)
315 PRK09687 putative lyase; Provi 75.8 76 0.0017 30.4 30.7 137 268-420 141-278 (280)
316 PF00637 Clathrin: Region in C 75.5 0.93 2E-05 38.3 0.1 84 345-435 13-96 (143)
317 COG3947 Response regulator con 75.5 75 0.0016 30.1 15.7 83 102-186 97-190 (361)
318 KOG2034 Vacuolar sorting prote 74.9 1.4E+02 0.0031 33.0 25.0 177 27-223 360-556 (911)
319 PF00637 Clathrin: Region in C 72.8 1.6 3.4E-05 36.9 0.8 53 134-186 14-66 (143)
320 TIGR02508 type_III_yscG type I 72.6 43 0.00092 26.0 9.3 79 40-122 20-98 (115)
321 PF13929 mRNA_stabil: mRNA sta 71.7 94 0.002 29.6 17.7 116 284-399 143-263 (292)
322 COG2976 Uncharacterized protei 71.1 75 0.0016 28.2 12.8 89 204-299 96-189 (207)
323 PF07163 Pex26: Pex26 protein; 70.6 39 0.00085 31.7 9.1 87 204-292 90-181 (309)
324 COG4455 ImpE Protein of avirul 69.7 37 0.00079 30.7 8.4 54 204-260 8-61 (273)
325 PF02284 COX5A: Cytochrome c o 69.4 52 0.0011 25.6 9.4 46 287-332 28-73 (108)
326 PF06552 TOM20_plant: Plant sp 69.3 70 0.0015 28.0 9.8 59 392-454 53-123 (186)
327 PF13762 MNE1: Mitochondrial s 68.7 70 0.0015 26.9 10.8 80 377-456 42-127 (145)
328 KOG1464 COP9 signalosome, subu 68.5 1E+02 0.0022 28.8 16.3 153 37-189 39-218 (440)
329 COG4455 ImpE Protein of avirul 68.2 38 0.00082 30.6 8.2 56 97-153 6-61 (273)
330 PF13181 TPR_8: Tetratricopept 68.2 8.2 0.00018 22.6 3.1 23 378-400 5-27 (34)
331 PF13762 MNE1: Mitochondrial s 65.9 81 0.0018 26.6 10.4 82 341-422 41-128 (145)
332 PF13174 TPR_6: Tetratricopept 65.5 10 0.00023 21.8 3.2 20 170-189 8-27 (33)
333 KOG4234 TPR repeat-containing 65.2 74 0.0016 28.4 9.2 91 208-299 106-198 (271)
334 PF08311 Mad3_BUB1_I: Mad3/BUB 64.9 39 0.00084 27.7 7.4 57 27-85 67-123 (126)
335 KOG2471 TPR repeat-containing 64.6 1E+02 0.0022 31.6 11.2 105 349-455 250-380 (696)
336 KOG4648 Uncharacterized conser 64.2 21 0.00046 34.3 6.3 52 312-364 105-156 (536)
337 PF06552 TOM20_plant: Plant sp 63.9 1E+02 0.0022 27.0 11.3 14 159-172 110-123 (186)
338 COG5159 RPN6 26S proteasome re 63.9 1.3E+02 0.0029 28.4 11.4 128 275-402 9-153 (421)
339 TIGR03504 FimV_Cterm FimV C-te 63.7 17 0.00036 23.3 3.9 23 415-437 5-27 (44)
340 COG4785 NlpI Lipoprotein NlpI, 63.5 1.2E+02 0.0025 27.6 19.8 67 89-156 96-162 (297)
341 KOG4077 Cytochrome c oxidase, 63.4 51 0.0011 26.8 7.3 61 392-453 67-127 (149)
342 PF09477 Type_III_YscG: Bacter 63.1 73 0.0016 25.1 8.6 80 106-192 20-99 (116)
343 PF07721 TPR_4: Tetratricopept 62.4 13 0.00027 20.5 2.9 17 346-362 8-24 (26)
344 PF13181 TPR_8: Tetratricopept 61.6 24 0.00053 20.4 4.4 27 271-297 3-29 (34)
345 COG3947 Response regulator con 61.2 1.5E+02 0.0033 28.2 16.0 70 376-447 281-356 (361)
346 PF07163 Pex26: Pex26 protein; 60.7 1.1E+02 0.0024 28.9 10.0 87 311-397 90-181 (309)
347 TIGR03504 FimV_Cterm FimV C-te 60.1 21 0.00045 22.9 3.9 21 169-189 6-26 (44)
348 PF10345 Cohesin_load: Cohesin 59.8 2.6E+02 0.0057 30.4 37.0 190 28-223 29-251 (608)
349 KOG2063 Vacuolar assembly/sort 58.6 3.1E+02 0.0068 30.9 25.0 55 32-88 314-373 (877)
350 COG1747 Uncharacterized N-term 58.1 2.4E+02 0.0051 29.3 25.0 181 90-279 64-249 (711)
351 KOG4648 Uncharacterized conser 57.7 68 0.0015 31.1 8.3 48 137-186 107-155 (536)
352 PF02259 FAT: FAT domain; Int 57.6 2E+02 0.0043 28.3 23.5 63 270-332 147-212 (352)
353 KOG2297 Predicted translation 57.4 1.8E+02 0.004 27.8 19.6 171 160-359 163-341 (412)
354 PF08424 NRDE-2: NRDE-2, neces 56.8 2E+02 0.0044 28.2 16.9 77 144-222 48-127 (321)
355 PHA02875 ankyrin repeat protei 56.1 2.4E+02 0.0051 28.8 14.4 12 171-182 74-85 (413)
356 PF14853 Fis1_TPR_C: Fis1 C-te 56.0 47 0.001 22.3 5.2 36 415-452 7-42 (53)
357 KOG4234 TPR repeat-containing 54.9 1.6E+02 0.0034 26.4 10.1 61 346-410 141-202 (271)
358 cd08819 CARD_MDA5_2 Caspase ac 53.9 94 0.002 23.5 7.0 14 283-296 50-63 (88)
359 PF13929 mRNA_stabil: mRNA sta 53.4 2.1E+02 0.0045 27.3 22.2 61 231-291 199-260 (292)
360 KOG1464 COP9 signalosome, subu 52.7 2E+02 0.0044 26.9 16.9 117 142-262 42-173 (440)
361 KOG2063 Vacuolar assembly/sort 51.5 4.1E+02 0.0088 30.1 17.7 110 129-246 506-638 (877)
362 PF11663 Toxin_YhaV: Toxin wit 50.3 20 0.00043 29.4 3.2 31 139-171 107-137 (140)
363 KOG1258 mRNA processing protei 49.9 3.4E+02 0.0074 28.7 33.8 365 37-425 91-491 (577)
364 KOG0686 COP9 signalosome, subu 49.6 2.9E+02 0.0062 27.8 14.2 170 270-467 151-329 (466)
365 cd08819 CARD_MDA5_2 Caspase ac 49.6 88 0.0019 23.6 6.2 33 75-108 50-82 (88)
366 PF14561 TPR_20: Tetratricopep 49.0 86 0.0019 23.9 6.5 36 20-55 17-52 (90)
367 KOG4077 Cytochrome c oxidase, 48.9 1.3E+02 0.0027 24.6 7.3 47 287-333 67-113 (149)
368 PF10579 Rapsyn_N: Rapsyn N-te 48.8 61 0.0013 23.9 5.1 46 386-431 18-65 (80)
369 PF11846 DUF3366: Domain of un 48.6 93 0.002 27.7 7.8 33 405-437 140-172 (193)
370 PF11848 DUF3368: Domain of un 48.4 66 0.0014 21.0 5.0 29 387-415 15-43 (48)
371 PF11207 DUF2989: Protein of u 47.7 2.1E+02 0.0046 25.7 15.0 74 143-217 122-198 (203)
372 KOG2471 TPR repeat-containing 47.6 2.8E+02 0.006 28.6 11.0 104 316-421 252-381 (696)
373 PF11848 DUF3368: Domain of un 47.2 79 0.0017 20.6 5.2 28 139-166 14-41 (48)
374 PF11663 Toxin_YhaV: Toxin wit 47.0 23 0.00051 29.0 3.2 30 387-418 108-137 (140)
375 smart00028 TPR Tetratricopepti 46.9 40 0.00086 18.2 3.7 25 165-189 4-28 (34)
376 PF10579 Rapsyn_N: Rapsyn N-te 46.5 76 0.0016 23.4 5.3 45 281-325 18-64 (80)
377 PF14853 Fis1_TPR_C: Fis1 C-te 44.9 72 0.0016 21.5 4.8 34 380-415 7-40 (53)
378 COG5108 RPO41 Mitochondrial DN 43.7 2E+02 0.0044 30.7 9.8 75 309-386 33-115 (1117)
379 KOG4507 Uncharacterized conser 43.4 1.7E+02 0.0037 30.8 9.1 132 251-385 590-721 (886)
380 PF10366 Vps39_1: Vacuolar sor 43.4 1.6E+02 0.0035 23.3 7.4 27 271-297 41-67 (108)
381 KOG4507 Uncharacterized conser 42.5 90 0.002 32.7 7.1 55 169-224 649-703 (886)
382 PF02259 FAT: FAT domain; Int 42.0 3.5E+02 0.0075 26.6 23.5 67 196-262 145-212 (352)
383 PF07575 Nucleopor_Nup85: Nup8 41.0 2.1E+02 0.0046 30.7 10.3 32 317-348 508-539 (566)
384 PRK10564 maltose regulon perip 40.9 63 0.0014 30.9 5.4 37 94-130 259-295 (303)
385 PRK10941 hypothetical protein; 40.2 3.3E+02 0.0072 25.9 10.4 59 166-225 185-243 (269)
386 PF09868 DUF2095: Uncharacteri 40.2 1.1E+02 0.0025 24.2 5.7 37 133-170 67-103 (128)
387 PF04190 DUF410: Protein of un 39.9 3.3E+02 0.0071 25.7 16.9 25 126-150 89-113 (260)
388 smart00777 Mad3_BUB1_I Mad3/BU 39.9 99 0.0021 25.3 5.8 24 93-116 100-123 (125)
389 KOG3677 RNA polymerase I-assoc 38.6 4.3E+02 0.0094 26.7 11.5 61 200-260 238-298 (525)
390 PF04097 Nic96: Nup93/Nic96; 37.9 5.7E+02 0.012 27.9 19.4 155 276-436 265-441 (613)
391 PF09477 Type_III_YscG: Bacter 37.6 2.1E+02 0.0045 22.7 8.7 78 39-120 20-97 (116)
392 PF14689 SPOB_a: Sensor_kinase 37.5 89 0.0019 21.8 4.6 21 168-188 29-49 (62)
393 PF08424 NRDE-2: NRDE-2, neces 37.4 4.1E+02 0.0088 26.0 18.7 22 419-440 164-185 (321)
394 cd00280 TRFH Telomeric Repeat 36.1 2.5E+02 0.0054 24.8 7.8 68 320-390 85-159 (200)
395 PF14689 SPOB_a: Sensor_kinase 35.7 59 0.0013 22.6 3.5 33 22-54 20-52 (62)
396 PRK10564 maltose regulon perip 35.1 69 0.0015 30.6 4.8 36 377-412 260-295 (303)
397 COG0735 Fur Fe2+/Zn2+ uptake r 34.3 2.1E+02 0.0045 24.2 7.2 34 273-306 24-57 (145)
398 cd08332 CARD_CASP2 Caspase act 33.7 1.8E+02 0.0038 22.2 6.0 57 46-107 24-80 (90)
399 COG5187 RPN7 26S proteasome re 33.5 4.4E+02 0.0094 25.2 12.1 97 338-436 114-219 (412)
400 PF08311 Mad3_BUB1_I: Mad3/BUB 32.9 2.7E+02 0.0059 22.7 9.6 42 110-151 81-123 (126)
401 COG5108 RPO41 Mitochondrial DN 32.7 3.6E+02 0.0078 29.1 9.6 91 167-262 33-131 (1117)
402 COG1747 Uncharacterized N-term 32.5 6E+02 0.013 26.6 25.7 178 159-346 63-246 (711)
403 PF11846 DUF3366: Domain of un 32.2 2.2E+02 0.0048 25.3 7.6 31 372-402 142-172 (193)
404 PF09454 Vps23_core: Vps23 cor 31.8 90 0.002 22.1 3.8 30 128-157 9-38 (65)
405 smart00386 HAT HAT (Half-A-TPR 31.8 98 0.0021 17.2 4.0 17 39-55 1-17 (33)
406 PHA02875 ankyrin repeat protei 31.6 5.6E+02 0.012 26.0 16.5 75 138-220 10-88 (413)
407 KOG0991 Replication factor C, 31.3 4.3E+02 0.0093 24.5 13.0 73 333-408 188-272 (333)
408 COG4003 Uncharacterized protei 31.0 2E+02 0.0043 21.3 5.4 25 133-157 37-61 (98)
409 PF12862 Apc5: Anaphase-promot 30.6 2.4E+02 0.0053 21.4 6.8 53 385-437 9-69 (94)
410 KOG0403 Neoplastic transformat 30.5 6.1E+02 0.013 26.0 16.8 77 307-388 512-588 (645)
411 PRK13800 putative oxidoreducta 30.5 8.9E+02 0.019 27.9 28.4 265 58-352 632-897 (897)
412 TIGR03362 VI_chp_7 type VI sec 29.5 5.3E+02 0.012 25.0 12.4 47 27-75 101-147 (301)
413 KOG0376 Serine-threonine phosp 29.1 1.1E+02 0.0023 31.3 5.2 102 32-137 11-115 (476)
414 PF09868 DUF2095: Uncharacteri 29.1 2.2E+02 0.0047 22.7 5.7 35 310-345 67-101 (128)
415 PRK10941 hypothetical protein; 29.0 5.1E+02 0.011 24.6 10.9 60 238-298 185-244 (269)
416 PF09454 Vps23_core: Vps23 cor 28.7 1.4E+02 0.003 21.2 4.3 51 89-140 5-55 (65)
417 cd08326 CARD_CASP9 Caspase act 28.2 2.6E+02 0.0056 21.0 6.5 62 45-111 19-80 (84)
418 KOG2396 HAT (Half-A-TPR) repea 28.1 7.1E+02 0.015 26.0 36.4 99 336-437 456-558 (568)
419 KOG3636 Uncharacterized conser 27.8 6.6E+02 0.014 25.6 14.7 87 229-316 178-272 (669)
420 PF11123 DNA_Packaging_2: DNA 27.4 1.9E+02 0.0041 21.0 4.6 33 249-282 12-44 (82)
421 KOG0890 Protein kinase of the 27.1 1.4E+03 0.031 29.2 25.1 62 304-368 1670-1731(2382)
422 PF09670 Cas_Cas02710: CRISPR- 27.0 6.7E+02 0.014 25.3 12.3 52 281-333 143-198 (379)
423 COG2909 MalT ATP-dependent tra 27.0 9.5E+02 0.021 27.1 27.1 48 175-222 471-522 (894)
424 PRK09857 putative transposase; 26.7 5.5E+02 0.012 24.8 9.5 66 130-196 209-274 (292)
425 PF11817 Foie-gras_1: Foie gra 26.4 3.2E+02 0.007 25.5 7.8 58 202-259 183-243 (247)
426 COG0735 Fur Fe2+/Zn2+ uptake r 26.4 4E+02 0.0086 22.5 7.9 64 396-465 8-72 (145)
427 smart00638 LPD_N Lipoprotein N 25.9 8.5E+02 0.018 26.2 25.8 261 78-345 296-573 (574)
428 COG2909 MalT ATP-dependent tra 25.8 1E+03 0.022 27.0 25.5 227 208-434 426-684 (894)
429 PF12862 Apc5: Anaphase-promot 25.7 3E+02 0.0065 20.9 7.1 22 168-189 47-68 (94)
430 PF11838 ERAP1_C: ERAP1-like C 25.1 6.3E+02 0.014 24.4 19.6 190 99-294 45-262 (324)
431 COG4003 Uncharacterized protei 24.9 2.9E+02 0.0062 20.5 5.3 30 310-340 37-66 (98)
432 TIGR01503 MthylAspMut_E methyl 24.7 5E+02 0.011 26.8 8.8 46 319-367 69-114 (480)
433 KOG0890 Protein kinase of the 24.6 1.6E+03 0.034 28.9 25.8 317 67-403 1389-1731(2382)
434 PF10345 Cohesin_load: Cohesin 24.5 9.3E+02 0.02 26.2 37.6 157 32-189 66-252 (608)
435 PF11817 Foie-gras_1: Foie gra 24.3 4E+02 0.0087 24.9 8.1 61 236-296 180-245 (247)
436 COG5187 RPN7 26S proteasome re 24.0 6.5E+02 0.014 24.1 13.6 28 162-189 115-142 (412)
437 KOG4567 GTPase-activating prot 24.0 4.7E+02 0.01 25.3 8.0 42 290-331 264-305 (370)
438 PF02184 HAT: HAT (Half-A-TPR) 23.9 1.2E+02 0.0025 18.0 2.6 23 424-448 2-24 (32)
439 KOG0403 Neoplastic transformat 23.9 8E+02 0.017 25.2 18.4 75 377-456 512-586 (645)
440 KOG4521 Nuclear pore complex, 23.8 1.2E+03 0.027 27.3 14.4 129 37-179 932-1071(1480)
441 KOG0687 26S proteasome regulat 23.5 7.1E+02 0.015 24.4 15.1 40 163-202 105-148 (393)
442 PF12926 MOZART2: Mitotic-spin 23.4 3.3E+02 0.0072 20.6 8.1 43 113-155 29-71 (88)
443 PF09670 Cas_Cas02710: CRISPR- 22.9 7.9E+02 0.017 24.8 12.2 55 136-191 140-198 (379)
444 PF00244 14-3-3: 14-3-3 protei 22.6 6.2E+02 0.014 23.4 9.0 56 98-153 7-63 (236)
445 PF10366 Vps39_1: Vacuolar sor 22.6 3.9E+02 0.0086 21.1 7.5 26 307-332 42-67 (108)
446 KOG0687 26S proteasome regulat 22.3 7.5E+02 0.016 24.2 16.5 95 340-436 105-208 (393)
447 KOG4567 GTPase-activating prot 22.1 5.9E+02 0.013 24.7 8.2 71 147-222 263-343 (370)
448 smart00777 Mad3_BUB1_I Mad3/BU 22.1 4E+02 0.0086 21.9 6.4 41 146-186 82-123 (125)
449 PF07064 RIC1: RIC1; InterPro 22.0 6.8E+02 0.015 23.6 15.5 25 95-119 85-109 (258)
450 PRK12356 glutaminase; Reviewed 21.8 3.7E+02 0.0081 26.2 7.2 32 411-442 191-222 (319)
451 PRK11639 zinc uptake transcrip 21.8 4.9E+02 0.011 22.6 7.5 59 119-178 18-76 (169)
452 cd07153 Fur_like Ferric uptake 21.6 2.6E+02 0.0057 22.2 5.5 22 423-444 14-35 (116)
453 PF10255 Paf67: RNA polymerase 21.5 8.7E+02 0.019 24.7 12.8 176 198-380 123-318 (404)
454 PRK08691 DNA polymerase III su 21.3 1.1E+03 0.024 26.1 11.2 46 286-333 181-227 (709)
455 PRK11639 zinc uptake transcrip 21.3 4.8E+02 0.01 22.7 7.3 33 321-353 42-74 (169)
456 PF02847 MA3: MA3 domain; Int 21.0 4.2E+02 0.009 20.8 8.6 22 379-400 7-28 (113)
457 KOG1308 Hsp70-interacting prot 20.7 43 0.00094 32.4 0.8 86 75-162 128-217 (377)
458 PF13838 Clathrin_H_link: Clat 20.6 3.2E+02 0.007 19.4 4.9 32 22-53 3-34 (66)
459 KOG0686 COP9 signalosome, subu 20.5 9E+02 0.02 24.5 15.6 63 128-190 151-215 (466)
460 PF04762 IKI3: IKI3 family; I 20.4 1.4E+03 0.03 26.6 13.6 196 239-463 699-922 (928)
461 PF04910 Tcf25: Transcriptiona 20.3 8.7E+02 0.019 24.3 18.8 192 46-246 27-271 (360)
462 KOG3824 Huntingtin interacting 20.1 4.8E+02 0.011 25.1 7.3 49 37-87 128-176 (472)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.8e-91 Score=758.90 Aligned_cols=584 Identities=78% Similarity=1.254 Sum_probs=568.4
Q ss_pred ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 007194 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCA 103 (613)
Q Consensus 24 ~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~ 103 (613)
+...+...|+.|++.|++++|+++|++|.+.|+++++..++..++..|.+.|.+++|+++|+.|+.||..+||.++++|+
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~ 448 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCA 448 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007194 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183 (613)
Q Consensus 104 ~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 183 (613)
+.|+++.|.++|+.|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.+
T Consensus 449 k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~ 528 (1060)
T PLN03218 449 SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFG 528 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 007194 184 AYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263 (613)
Q Consensus 184 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 263 (613)
+|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.....++.||..+|++++.+|++.|++++|.++|+.|.+.
T Consensus 529 lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~ 608 (1060)
T PLN03218 529 AYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999998755678999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHH
Q 007194 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343 (613)
Q Consensus 264 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 343 (613)
++.|+..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+
T Consensus 609 gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyn 688 (1060)
T PLN03218 609 NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYS 688 (1060)
T ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC
Q 007194 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423 (613)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 423 (613)
+||.+|+++|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|
T Consensus 689 sLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G 768 (1060)
T PLN03218 689 SLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKD 768 (1060)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhHHHHHHhhhhhhcccCCCCccchhhhHHHHHHHHHHHHcCCCCcHH
Q 007194 424 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVE 503 (613)
Q Consensus 424 ~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 503 (613)
++++|.++|++|.+.|+.||..+|++|+++|.++|++|+.+.+....|+.+.+.+.+.|+.+|+.+|++|++.|+.||.+
T Consensus 769 ~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~ 848 (1060)
T PLN03218 769 DADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTME 848 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHH
Confidence 99999999999999999999999999999988889999999999999999888888899999999999999999999999
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHhCCChhhhhcccccccccccccchhHHHHHHHHHHhCCCCCcccccCCceeecccc
Q 007194 504 VVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARK 583 (613)
Q Consensus 504 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~a~~~~~~a~~~g~~~~~~~~~~~~~~~~~~ 583 (613)
||..+++|+....+...+..|.+.+++.|...||..|+++|+++|++.++|+.++++|.+.|++|+..+..+.|++|+|+
T Consensus 849 T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~~~~A~~l~~em~~~Gi~p~~~~~~~~~~~d~~~ 928 (1060)
T PLN03218 849 VLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEYDPRAFSLLEEAASLGVVPSVSFKKSPIVIDAEE 928 (1060)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccChHHHHHHHHHHHHcCCCCCcccccCceEEEccc
Confidence 99999999988888889999999999999999999999999999987789999999999999999998888899999999
Q ss_pred CcchHHHHHHHHHHHHHHHhhHhh
Q 007194 584 LEIHTAKVYLLTILKGLRHRLAAA 607 (613)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~ 607 (613)
+++++|++++++||+++++++++|
T Consensus 929 ~~~~aa~~~l~~wl~~~~~~~~~g 952 (1060)
T PLN03218 929 LPVFAAEVYLLTILKGLKHRLAAG 952 (1060)
T ss_pred CcchhHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999987
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.1e-69 Score=598.74 Aligned_cols=508 Identities=18% Similarity=0.293 Sum_probs=440.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHH----------------------------------HHHHHHHHhhhHH
Q 007194 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVY----------------------------------HARFFNVCKSQKA 76 (613)
Q Consensus 31 ~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~----------------------------------~~~l~~~~~~~~~ 76 (613)
....+++.|++++|..+|++|.+.|+.|....+ ...++..+.+.|+
T Consensus 57 ~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~ 136 (857)
T PLN03077 57 QLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGE 136 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCC
Confidence 344556899999999999999998764433221 2334455667788
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHH--------------------------
Q 007194 77 IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY-------------------------- 130 (613)
Q Consensus 77 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~-------------------------- 130 (613)
++.|.++|++|++||+++||++|++|++.|++++|+++|++|...|+.||.+||
T Consensus 137 ~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~ 216 (857)
T PLN03077 137 LVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRF 216 (857)
T ss_pred hHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999998888887776
Q ss_pred ---------HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007194 131 ---------TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201 (613)
Q Consensus 131 ---------~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 201 (613)
++||.+|++.|++++|.++|++|. .||..+||+||.+|++.|++++|+++|++|.+.|+.||..||+
T Consensus 217 g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~ 292 (857)
T PLN03077 217 GFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTIT 292 (857)
T ss_pred CCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHH
Confidence 555666677777777777777776 5677888888888888888888888888888888888888888
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 007194 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281 (613)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 281 (613)
.++.+|++.|+.+.|.+++..|.+. |+.||..+|++|+.+|++.|++++|.++|++|.. ||..+||++|.+|++
T Consensus 293 ~ll~a~~~~g~~~~a~~l~~~~~~~--g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~ 366 (857)
T PLN03077 293 SVISACELLGDERLGREMHGYVVKT--GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEK 366 (857)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHh--CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHh
Confidence 8888888888888888888888774 7889999999999999999999999999998864 566899999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHH
Q 007194 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361 (613)
Q Consensus 282 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 361 (613)
.|++++|.++|++|.+.|+.||..||++++.+|++.|++++|.++++.+.+.|+.|+..+||+|+++|+++|++++|.++
T Consensus 367 ~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~v 446 (857)
T PLN03077 367 NGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEV 446 (857)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCC
Q 007194 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441 (613)
Q Consensus 362 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~ 441 (613)
|++|. .+|.++||++|.+|++.|+.++|+.+|++|.. +++||..||+++|.+|++.|+++.+.+++..+.+.|+.
T Consensus 447 f~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~ 521 (857)
T PLN03077 447 FHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIG 521 (857)
T ss_pred HHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCC
Confidence 99997 58999999999999999999999999999986 59999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhHHHHHHhhhhhhcccCCCCccchhhhH------------HHHHHHHHHHHcCCCCcHHHHHHHH
Q 007194 442 PNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTS------------LALMVYREAIVAGTIPTVEVVSKVL 509 (613)
Q Consensus 442 p~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~------------~a~~~~~~m~~~g~~p~~~~~~~~l 509 (613)
+|..++|+||++| .++|++.++...|+.+ ..+..+|+. .|+.+|++|.+.|+.||.+||..++
T Consensus 522 ~~~~~~naLi~~y----~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll 596 (857)
T PLN03077 522 FDGFLPNALLDLY----VRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL 596 (857)
T ss_pred ccceechHHHHHH----HHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHH
Confidence 9999999999995 4577777777777776 566777876 4999999999999999999999987
Q ss_pred -hccCCCC---chhHHHHHHHHhCCChhhhhcccccccccccccc--hhHHHHHHHHH
Q 007194 510 -GCLQLPY---NADIRERLVENLGVSADALKRSNLCSLIDGFGEY--DPRAFSLLEEA 561 (613)
Q Consensus 510 -~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~--~~~a~~~~~~a 561 (613)
+|++.+. +.++++.|.+.+|+.|+..||+ ++++.+||. .++|.+++++|
T Consensus 597 ~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~---~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 597 CACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA---CVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH---HHHHHHHhCCCHHHHHHHHHHC
Confidence 5776654 4567888888999999999998 577777653 25676777665
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.2e-67 Score=580.93 Aligned_cols=543 Identities=20% Similarity=0.300 Sum_probs=435.5
Q ss_pred hhHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCchHHH----------------------------------HHHHH
Q 007194 27 EQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVY----------------------------------HARFF 68 (613)
Q Consensus 27 ~~~~~~~~l~----~~g~~~~A~~l~~~m~~~~~~~~~~~~----------------------------------~~~l~ 68 (613)
+++.+||.++ +.|++++|+++|++|.+.|+.|+...+ ...++
T Consensus 150 ~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li 229 (857)
T PLN03077 150 RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI 229 (857)
T ss_pred CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHH
Confidence 5667788777 789999999999999988876553332 34455
Q ss_pred HHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 007194 69 NVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148 (613)
Q Consensus 69 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 148 (613)
..+.+.|++++|.++|++|+.+|.++||++|++|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+
T Consensus 230 ~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~ 309 (857)
T PLN03077 230 TMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGRE 309 (857)
T ss_pred HHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHH
Confidence 66777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC
Q 007194 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228 (613)
Q Consensus 149 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 228 (613)
++..|.+.|+.||..+||+||.+|++.|++++|.++|++|. .||.++|+++|.+|++.|++++|.++|++|...
T Consensus 310 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~-- 383 (857)
T PLN03077 310 MHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQD-- 383 (857)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh--
Confidence 99999999999999999999998888888888888888886 467788888888888888888888888888764
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----------
Q 007194 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK---------- 298 (613)
Q Consensus 229 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------- 298 (613)
++.||..||++++.+|++.|+++.|.++++.+.+.|+.|+..+|++||++|++.|++++|.++|++|.+.
T Consensus 384 g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~ 463 (857)
T PLN03077 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIA 463 (857)
T ss_pred CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHH
Confidence 5677777777777777777777777777777777766666666666666666666666666655555332
Q ss_pred --------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHH
Q 007194 299 --------------------GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358 (613)
Q Consensus 299 --------------------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 358 (613)
++.||..||++++.+|++.|.++.+.+++..+.+.|+.+|..++|+|+++|+++|++++|
T Consensus 464 ~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A 543 (857)
T PLN03077 464 GLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYA 543 (857)
T ss_pred HHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHH
Confidence 356777777777777777777777777777777777777777788888888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH-H
Q 007194 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK-E 437 (613)
Q Consensus 359 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~-~ 437 (613)
.++|+.+ .||..+||+||.+|+++|+.++|+++|++|.+.|+.||..||+++|.+|++.|++++|.++|+.|. +
T Consensus 544 ~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~ 618 (857)
T PLN03077 544 WNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEK 618 (857)
T ss_pred HHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHH
Confidence 8888887 489999999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred cCCCCCHHHHHHHHHHHHhhHHHHHHhhhhhhcccCCCCccchhhhHHHHHHHHHHHHcCCCCcHHHHHHHHhccCCCCc
Q 007194 438 DGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYN 517 (613)
Q Consensus 438 ~g~~p~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~l~~~~~~~~ 517 (613)
.|+.|+..+|++++++|+| +|.+.+ |.+++++| +++||..+|..+++.|..+.+
T Consensus 619 ~gi~P~~~~y~~lv~~l~r----~G~~~e-------------------A~~~~~~m---~~~pd~~~~~aLl~ac~~~~~ 672 (857)
T PLN03077 619 YSITPNLKHYACVVDLLGR----AGKLTE-------------------AYNFINKM---PITPDPAVWGALLNACRIHRH 672 (857)
T ss_pred hCCCCchHHHHHHHHHHHh----CCCHHH-------------------HHHHHHHC---CCCCCHHHHHHHHHHHHHcCC
Confidence 8999999999999999665 444433 45556666 479999999999987777777
Q ss_pred hhHHHHHHHH-hCCChh-hhhcccccccccccccchhHHHHHHHHHHhCCCCCc--ccccC----CceeeccccCcchHH
Q 007194 518 ADIRERLVEN-LGVSAD-ALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPC--VSFKE----IPVVVDARKLEIHTA 589 (613)
Q Consensus 518 ~~~~~~~~~~-~~~~~~-~~~~~~~~~~i~~~g~~~~~a~~~~~~a~~~g~~~~--~~~~~----~~~~~~~~~~~~~~~ 589 (613)
.+..+...+. ..+.|+ ...|..++.++...|+|. +|.++.++|.+.|+.++ .+++. .|.+......++...
T Consensus 673 ~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~-~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~ 751 (857)
T PLN03077 673 VELGELAAQHIFELDPNSVGYYILLCNLYADAGKWD-EVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIK 751 (857)
T ss_pred hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChH-HHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchH
Confidence 7776665543 567776 444554556677779875 57799999999999864 33322 255566777899999
Q ss_pred HHHHHHHHHHHHHhhH-hhhh
Q 007194 590 KVYLLTILKGLRHRLA-AAIL 609 (613)
Q Consensus 590 ~~~~~~~~~~~~~~~~-~~~~ 609 (613)
+||- .|..+..+++ .||.
T Consensus 752 ~i~~--~l~~l~~~~~~~g~~ 770 (857)
T PLN03077 752 EINT--VLEGFYEKMKASGLA 770 (857)
T ss_pred HHHH--HHHHHHHHHHhCCcC
Confidence 9997 6777755553 4543
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.5e-63 Score=538.65 Aligned_cols=464 Identities=23% Similarity=0.403 Sum_probs=420.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHcCCC
Q 007194 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKD 107 (613)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~ 107 (613)
++.+.+.|.+++|..+|+.|.. ++...+..++..|.+.|++++|.++|+.|. .||..+||++|.+|++.|+
T Consensus 413 i~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~ 487 (1060)
T PLN03218 413 FKACKKQRAVKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGK 487 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcC
Confidence 3445588999999999999975 345566678888899999999999999875 6899999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007194 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (613)
Q Consensus 108 ~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (613)
+++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++
T Consensus 488 vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~e 567 (1060)
T PLN03218 488 VDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAE 567 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHh--CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 007194 188 MRS--KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265 (613)
Q Consensus 188 m~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 265 (613)
|.. .|+.||.++|+++|.+|++.|++++|.++|+.|.+. ++.|+..+|+++|.+|++.|++++|.++|++|.+.|+
T Consensus 568 M~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~--gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv 645 (1060)
T PLN03218 568 MKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY--NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGV 645 (1060)
T ss_pred HHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Confidence 976 688999999999999999999999999999999885 7899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHH
Q 007194 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345 (613)
Q Consensus 266 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 345 (613)
.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+||.|
T Consensus 646 ~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~L 725 (1060)
T PLN03218 646 KPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNAL 725 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----
Q 007194 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER---- 421 (613)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~---- 421 (613)
|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|.+|.+.|+.||..+|++++..|.+
T Consensus 726 I~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~k 805 (1060)
T PLN03218 726 ITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEK 805 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999876542
Q ss_pred -------------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--hHHHHHHhhhhhhcccCCCCc---
Q 007194 422 -------------------KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQ--- 477 (613)
Q Consensus 422 -------------------~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~--- 477 (613)
.+..++|..+|++|.+.|+.||..+|+.++.++.. ....+..+.+.+. ..+..+.
T Consensus 806 a~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~-~~~~~~~~~~ 884 (1060)
T PLN03218 806 ACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG-ISADSQKQSN 884 (1060)
T ss_pred HhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhc-cCCCCcchhh
Confidence 12347899999999999999999999999966543 4455555544321 1111110
Q ss_pred ---cchh---hhHHHHHHHHHHHHcCCCCcHH
Q 007194 478 ---IENK---WTSLALMVYREAIVAGTIPTVE 503 (613)
Q Consensus 478 ---~~~~---~~~~a~~~~~~m~~~g~~p~~~ 503 (613)
...+ +...|+.+|++|...|+.|+..
T Consensus 885 y~~Li~g~~~~~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 885 LSTLVDGFGEYDPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hHHHHHhhccChHHHHHHHHHHHHcCCCCCcc
Confidence 0011 3346999999999999999985
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.5e-62 Score=532.56 Aligned_cols=500 Identities=20% Similarity=0.308 Sum_probs=437.8
Q ss_pred HHHHHhhhHHHHHHHHHHHhCC-----CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 007194 67 FFNVCKSQKAIKEAFRFFKLVP-----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141 (613)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g 141 (613)
++..+.+.|++++|+++|+.|. .||..+|+.++.+|++.++++.|.+++..|.+.|+.||..+|+.|+.+|++.|
T Consensus 93 ~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g 172 (697)
T PLN03081 93 QIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCG 172 (697)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCC
Confidence 3444556677777777777653 47899999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 007194 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA 221 (613)
Q Consensus 142 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 221 (613)
++++|.++|++|. .||..+||++|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|..+.+.+++.
T Consensus 173 ~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~ 248 (697)
T PLN03081 173 MLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHC 248 (697)
T ss_pred CHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHH
Confidence 9999999999997 689999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007194 222 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301 (613)
Q Consensus 222 ~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (613)
.+.+. ++.||..++++|+++|++.|++++|.++|+.|.+ +|..+||+||.+|++.|++++|.++|++|.+.|+.
T Consensus 249 ~~~~~--g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 249 CVLKT--GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHh--CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99874 7899999999999999999999999999999965 46799999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007194 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381 (613)
Q Consensus 302 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 381 (613)
||..||++++.+|++.|++++|.+++..|.+.|+.||..+|++|+++|+++|++++|.++|++|. .||..+||+||
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI 398 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALI 398 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999997 58999999999
Q ss_pred HHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhhHHH
Q 007194 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-DGVIPNLVMFKCIIGMCSRRYEK 460 (613)
Q Consensus 382 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~g~~p~~~~~~~li~~~~~~~~~ 460 (613)
.+|+++|+.++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|+.|.+ .|+.|+..+|+++|++|++
T Consensus 399 ~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r---- 474 (697)
T PLN03081 399 AGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR---- 474 (697)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh----
Confidence 99999999999999999999999999999999999999999999999999999985 7999999999999999765
Q ss_pred HHHhhhhhhcccCCCCccchhhhHHHHHHHHHHHHcCCCCcHHHHHHHHhccCCCCchhHHHHHHH-HhCCChh-hhhcc
Q 007194 461 ARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVE-NLGVSAD-ALKRS 538 (613)
Q Consensus 461 a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~ 538 (613)
+|.+.+ |.++|++ .++.||..+|..++..|...++.+..+.+.+ ..++.|+ ..+|.
T Consensus 475 ~G~~~e-------------------A~~~~~~---~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~ 532 (697)
T PLN03081 475 EGLLDE-------------------AYAMIRR---APFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYV 532 (697)
T ss_pred cCCHHH-------------------HHHHHHH---CCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchH
Confidence 444443 3344443 4689999999999876555555555444433 4677886 56777
Q ss_pred cccccccccccchhHHHHHHHHHHhCCCC--CcccccC----CceeeccccCcchHHHHHHHHHHHHHHHhh-Hhhhh
Q 007194 539 NLCSLIDGFGEYDPRAFSLLEEAASFGIV--PCVSFKE----IPVVVDARKLEIHTAKVYLLTILKGLRHRL-AAAIL 609 (613)
Q Consensus 539 ~~~~~i~~~g~~~~~a~~~~~~a~~~g~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 609 (613)
.++.++...|+| ++|.+++++|.+.|+. |..++.. .+.++.....++...++|- .|..+-.++ ++||.
T Consensus 533 ~L~~~y~~~G~~-~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~--~l~~l~~~~~~~gy~ 607 (697)
T PLN03081 533 VLLNLYNSSGRQ-AEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQ--KLDELMKEISEYGYV 607 (697)
T ss_pred HHHHHHHhCCCH-HHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHH--HHHHHHHHHHHcCCC
Confidence 666666667876 5788999999999886 3333321 2456667778888888876 555554443 34543
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.7e-59 Score=508.86 Aligned_cols=461 Identities=17% Similarity=0.267 Sum_probs=404.2
Q ss_pred hhHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 007194 27 EQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVC 102 (613)
Q Consensus 27 ~~~~~~~~l~----~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~ 102 (613)
++..+|+.++ +.++++.|.+++..|.+.|+.| +..+...++..+.+.|++++|.++|++|+.||.++||+++.+|
T Consensus 121 ~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~ 199 (697)
T PLN03081 121 LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGL 199 (697)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHH
Confidence 3445555554 5667777777777777777644 4555666778888889999999999999999999999999999
Q ss_pred HcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007194 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182 (613)
Q Consensus 103 ~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 182 (613)
++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|..+.+.+++..+.+.|+.||..+||+||++|++.|++++|.
T Consensus 200 ~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~ 279 (697)
T PLN03081 200 VDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDAR 279 (697)
T ss_pred HHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007194 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (613)
Q Consensus 183 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 262 (613)
++|++|. .+|.++||++|.+|++.|+.++|.++|++|... ++.||..||++++.+|++.|++++|.+++..|.+
T Consensus 280 ~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~--g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~ 353 (697)
T PLN03081 280 CVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS--GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR 353 (697)
T ss_pred HHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 9999996 568999999999999999999999999999874 7899999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhH
Q 007194 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342 (613)
Q Consensus 263 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 342 (613)
.|+.|+..+|++||++|++.|++++|.++|++|.+ ||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||
T Consensus 354 ~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~ 429 (697)
T PLN03081 354 TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTF 429 (697)
T ss_pred hCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHH
Confidence 99999999999999999999999999999999964 68899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 007194 343 SSLMGACSNAKNWQKALELYEHMKS-IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421 (613)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 421 (613)
++++.+|++.|.+++|.++|+.|.+ .|+.|+..+|++|+.+|++.|++++|.+++++| ++.|+..+|++++.+|..
T Consensus 430 ~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~ 506 (697)
T PLN03081 430 LAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRI 506 (697)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999976 689999999999999999999999999999876 478999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh--hHHHHHHhhhhhhcccCCCCccchhh----------------
Q 007194 422 KDDVEVGLMLLSQAKEDGVIPN-LVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKW---------------- 482 (613)
Q Consensus 422 ~g~~~~a~~~~~~~~~~g~~p~-~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~---------------- 482 (613)
.|+++.|..+++++.+ +.|+ ..+|+.|+++|++ ++++|.++.+.+..-.- ......+|
T Consensus 507 ~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~-~k~~g~s~i~~~~~~~~f~~~d~~ 583 (697)
T PLN03081 507 HKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL-SMHPACTWIEVKKQDHSFFSGDRL 583 (697)
T ss_pred cCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC-ccCCCeeEEEECCeEEEEccCCCC
Confidence 9999999999999875 4564 6799999999877 67777776654432110 00111112
Q ss_pred -------hHHHHHHHHHHHHcCCCCcHHH
Q 007194 483 -------TSLALMVYREAIVAGTIPTVEV 504 (613)
Q Consensus 483 -------~~~a~~~~~~m~~~g~~p~~~~ 504 (613)
......+..+|.+.|..||...
T Consensus 584 h~~~~~i~~~l~~l~~~~~~~gy~~~~~~ 612 (697)
T PLN03081 584 HPQSREIYQKLDELMKEISEYGYVAEENE 612 (697)
T ss_pred CccHHHHHHHHHHHHHHHHHcCCCCCcch
Confidence 1234667889999999998643
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.98 E-value=1.2e-26 Score=263.52 Aligned_cols=517 Identities=16% Similarity=0.083 Sum_probs=343.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChH
Q 007194 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSE 109 (613)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 109 (613)
..+.+.|++++|+..++++...+ |.+......+...+...|++++|.++|+++. +.+...+..+...+...|+++
T Consensus 337 ~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 414 (899)
T TIGR02917 337 SIQLRLGRVDEAIATLSPALGLD--PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPS 414 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChH
Confidence 33445666666666666665554 3444444455555566666666666666543 334555666666666666677
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007194 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (613)
Q Consensus 110 ~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (613)
+|...++.+.+.. +........++..+.+.|++++|.++++.+.... +++..+|..+...|...|++++|.+.|+++.
T Consensus 415 ~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 492 (899)
T TIGR02917 415 EAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKAL 492 (899)
T ss_pred HHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 6766666666543 2233444556666777777777777777766543 4566777778888888888888888888777
Q ss_pred hCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH
Q 007194 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269 (613)
Q Consensus 190 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 269 (613)
+.. +.+...+..+...+...|++++|.+.++++... .+.+..++..+...+.+.|+.++|..+++++.+.+ +.+.
T Consensus 493 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 567 (899)
T TIGR02917 493 SIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTI---DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEI 567 (899)
T ss_pred hhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccch
Confidence 653 344556667777778888888888888877653 23456677777788888888888888888877665 5566
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHH
Q 007194 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (613)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (613)
..+..++..|.+.|++++|..+++.+.+... .+...|..+...+...|++++|...++.+.+.. +.+...+..+...|
T Consensus 568 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 645 (899)
T TIGR02917 568 EPALALAQYYLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAY 645 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 7777888888888888888888888876543 366778888888888888888888888887764 45667788888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 007194 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429 (613)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 429 (613)
.+.|++++|...|+++.+.. +.+..+|..++..+...|++++|.++++.+.+.+ +++...+..+...+...|++++|.
T Consensus 646 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~ 723 (899)
T TIGR02917 646 AVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAI 723 (899)
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHH
Confidence 88888888888888887653 3457788888888888888888888888887764 456677777888888889999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHh--hHHHHHHhhhhhhcccCCCCcc---------chhhhHHHHHHHHHHHHcCC
Q 007194 430 MLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQI---------ENKWTSLALMVYREAIVAGT 498 (613)
Q Consensus 430 ~~~~~~~~~g~~p~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~~---------~~~~~~~a~~~~~~m~~~g~ 498 (613)
..++++.+.+ |+..++..+..++.+ ++++|....+......+..+.. ..+-...|...|+++++.
T Consensus 724 ~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-- 799 (899)
T TIGR02917 724 QAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK-- 799 (899)
T ss_pred HHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--
Confidence 9888888743 444555566666554 5666655544433222221110 011123478888888875
Q ss_pred CCcHHHHHHHHh--ccCCCCchhHHHHHHHHhCCChhhhh-cccccccccccccchhHHHHHHHHHHhCCCCCcc
Q 007194 499 IPTVEVVSKVLG--CLQLPYNADIRERLVENLGVSADALK-RSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCV 570 (613)
Q Consensus 499 ~p~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~g~~~~~a~~~~~~a~~~g~~~~~ 570 (613)
.|+.......++ ....+. .+....+.+.....|+... ...+..+....|+ .++|...+++|++. .|+.
T Consensus 800 ~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~a~~~--~~~~ 870 (899)
T TIGR02917 800 APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGE-ADRALPLLRKAVNI--APEA 870 (899)
T ss_pred CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHhh--CCCC
Confidence 355544333332 223333 4445455555556665332 2222333334454 36788999999875 4543
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=2.5e-26 Score=260.89 Aligned_cols=511 Identities=13% Similarity=0.058 Sum_probs=407.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCC
Q 007194 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKD 107 (613)
Q Consensus 31 ~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~ 107 (613)
....+.+.|++++|.+.|+++.+.+ |.+...+..+...+...|+.++|.+.|+.+. +.+...+..++..+.+.|+
T Consensus 369 l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 446 (899)
T TIGR02917 369 LGEAYLALGDFEKAAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQ 446 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCC
Confidence 3445568999999999999998876 6666677777778888899999999998754 3345566778888999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007194 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (613)
Q Consensus 108 ~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (613)
+++|..+++.+.... +++..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|++
T Consensus 447 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 524 (899)
T TIGR02917 447 FDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEK 524 (899)
T ss_pred HHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999998754 6678899999999999999999999999998764 45677888899999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 007194 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267 (613)
Q Consensus 188 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 267 (613)
+...+ +.+..++..+...+.+.|+.++|...+.++.... +.+...+..++..|.+.|++++|..+++.+.+.. +.
T Consensus 525 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 599 (899)
T TIGR02917 525 VLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN---PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PD 599 (899)
T ss_pred HHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CC
Confidence 98764 4577888999999999999999999999987642 4556678889999999999999999999998765 66
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 007194 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (613)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 347 (613)
+..+|..+...|.+.|++++|...|+.+.+.... +...+..+...+.+.|++++|...++.+.+.. +.+..++..+..
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 677 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQ 677 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 7889999999999999999999999999876543 66778889999999999999999999998865 566889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHH
Q 007194 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427 (613)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 427 (613)
.+...|++++|.++++.+.+.. +++...+..+...+.+.|++++|.+.|+++... .|+..++..+..++.+.|++++
T Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 754 (899)
T TIGR02917 678 LLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAE 754 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHH
Confidence 9999999999999999998875 456788888999999999999999999999885 5766888889999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHh--hHHHHHHhhhhhhcccCCCCccchhhh-----------HHHHHHHHHHH
Q 007194 428 GLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWT-----------SLALMVYREAI 494 (613)
Q Consensus 428 a~~~~~~~~~~g~~p~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~-----------~~a~~~~~~m~ 494 (613)
|.+.++++.+.. +.+...+..+...|.+ ++++|....+......+. +...+. ..|+..+++..
T Consensus 755 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~~A~~~~~~~~ 830 (899)
T TIGR02917 755 AVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD---NAVVLNNLAWLYLELKDPRALEYAEKAL 830 (899)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 999999998753 4467777777777764 677777766654433332 222222 24777788777
Q ss_pred HcCCCCcHHHHHHHHh--ccCCCCchhHHHHHHHHhCCCh-hhhhcccccccccccccchhHHHHHHHHHH
Q 007194 495 VAGTIPTVEVVSKVLG--CLQLPYNADIRERLVENLGVSA-DALKRSNLCSLIDGFGEYDPRAFSLLEEAA 562 (613)
Q Consensus 495 ~~g~~p~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~g~~~~~a~~~~~~a~ 562 (613)
+. .|+...+...++ +...+.-.+....+.+.....| ++..+..++..+...|+. ++|..++++++
T Consensus 831 ~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 898 (899)
T TIGR02917 831 KL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRK-AEARKELDKLL 898 (899)
T ss_pred hh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH-HHHHHHHHHHh
Confidence 64 566554443343 2334444555555555555555 455555555555556763 56888888875
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=2.8e-20 Score=189.56 Aligned_cols=299 Identities=13% Similarity=0.109 Sum_probs=153.0
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCC
Q 007194 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN---VHTYGALIDGCAKAGQ 177 (613)
Q Consensus 101 ~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~ 177 (613)
.+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3455667777777777777653 33455666666777777777777777776665421111 2345666666666777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC---HHHHHHHHHHHHhcCChhHHH
Q 007194 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD---HITIGALMKACANAGQVDRAR 254 (613)
Q Consensus 178 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~A~ 254 (613)
+++|..+|+++.+.. +++..+++.++..+.+.|++++|.+.++.+.... +..+. ...+..+...+.+.|++++|.
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG-GDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 777777777666542 3345566666666666666666666666665431 11111 112333444455555555555
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007194 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (613)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 334 (613)
..|+++.+.. +.+...+..+...|.+.|++++|.++|+++...+......++..+..+|...|++++|...++.+.+..
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 5555555443 233444555555555555555555555555543222112334444444444444444444444444332
Q ss_pred CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc---CCChhHHHHHHHHHHhCCCCC
Q 007194 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD---GDQLPKTMEVLSDMKSLGLCP 407 (613)
Q Consensus 335 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p 407 (613)
|+...+..+...+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.++++.++++|.+.+++|
T Consensus 280 --p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (389)
T PRK11788 280 --PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKR 351 (389)
T ss_pred --CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhC
Confidence 23333344444444444444444444444332 2444444444443332 234444444444444433333
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=6.1e-20 Score=187.09 Aligned_cols=303 Identities=17% Similarity=0.110 Sum_probs=253.0
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcc
Q 007194 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD---RVVFNALITACGQS 210 (613)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~ 210 (613)
...+...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 345568899999999999999874 44667899999999999999999999999987642222 24678889999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHH
Q 007194 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT----PEVYTIAINCCSQTGDWE 286 (613)
Q Consensus 211 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~ 286 (613)
|++++|..+|+++... .+++..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|+++
T Consensus 121 g~~~~A~~~~~~~l~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 121 GLLDRAEELFLQLVDE---GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred CCHHHHHHHHHHHHcC---CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999863 245677899999999999999999999999987653322 224567788889999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007194 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (613)
Q Consensus 287 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (613)
+|...|+++.+.... +...+..+...+.+.|++++|.++++++.+.+......+++.++.+|.+.|++++|...++++.
T Consensus 198 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 198 AARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999886532 4667788889999999999999999999876533335678899999999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh---cCCHHHHHHHHHHHHHcCCCCC
Q 007194 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER---KDDVEVGLMLLSQAKEDGVIPN 443 (613)
Q Consensus 367 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~---~g~~~~a~~~~~~~~~~g~~p~ 443 (613)
+. .|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..++++|.+.++.|+
T Consensus 277 ~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 277 EE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred Hh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 76 467677788999999999999999999998874 7999999988887764 5689999999999998777776
Q ss_pred HH
Q 007194 444 LV 445 (613)
Q Consensus 444 ~~ 445 (613)
+.
T Consensus 353 p~ 354 (389)
T PRK11788 353 PR 354 (389)
T ss_pred CC
Confidence 65
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.89 E-value=5e-17 Score=185.94 Aligned_cols=533 Identities=15% Similarity=0.103 Sum_probs=290.1
Q ss_pred cccChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHH----------------HHHHHHHhhhHHHHHHHHHH
Q 007194 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYH----------------ARFFNVCKSQKAIKEAFRFF 84 (613)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~----------------~~l~~~~~~~~~~~~A~~~~ 84 (613)
.|.++.........+++.|+.++|.+.++++.+.. |.+..+. ....+.+...|++++|.+.|
T Consensus 58 ~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~ 135 (1157)
T PRK11447 58 DPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASY 135 (1157)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHH
Confidence 44555555555566668888889988888888877 4444332 12233456678888888888
Q ss_pred HhCCC---CCHH-HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC--
Q 007194 85 KLVPN---PTLS-TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI-- 158 (613)
Q Consensus 85 ~~~~~---~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-- 158 (613)
++... ++.. ............|+.++|+..++.+.+.. +.+...+..+...+...|+.++|++.++++....-
T Consensus 136 ~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~ 214 (1157)
T PRK11447 136 DKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGR 214 (1157)
T ss_pred HHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCch
Confidence 87542 2221 11111122234588888888888888764 44667777888888888888888888887754210
Q ss_pred ----------------C--------------CCHHHH---------------------HHHHHHHHhcCCHHHHHHHHHH
Q 007194 159 ----------------E--------------PNVHTY---------------------GALIDGCAKAGQVAKAFGAYGI 187 (613)
Q Consensus 159 ----------------~--------------~~~~~~---------------------~~li~~~~~~g~~~~A~~~~~~ 187 (613)
. |+.... ......+...|++++|+..|++
T Consensus 215 ~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~ 294 (1157)
T PRK11447 215 DAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQ 294 (1157)
T ss_pred HHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 0 000000 0113345667888888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHH------------HHHHHHHHhcCChhHHHH
Q 007194 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI------------GALMKACANAGQVDRARE 255 (613)
Q Consensus 188 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~------------~~ll~~~~~~g~~~~A~~ 255 (613)
..+.. +.+...+..+..++.+.|++++|...|++....... .++...+ ......+.+.|++++|..
T Consensus 295 aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~-~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~ 372 (1157)
T PRK11447 295 AVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH-SSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAER 372 (1157)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 87763 336777888888888888888888888887754211 1111111 122345677888888888
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---------------------
Q 007194 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA--------------------- 314 (613)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~--------------------- 314 (613)
.|+++.+.. +.+...+..+...+...|++++|++.|++..+.... +...+..+...+
T Consensus 373 ~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~ 450 (1157)
T PRK11447 373 LYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKALAFIASLSASQRR 450 (1157)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHH
Confidence 888888775 556677788888888888888888888888775432 333343333333
Q ss_pred ---------------------HhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 007194 315 ---------------------GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373 (613)
Q Consensus 315 ---------------------~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 373 (613)
...|++++|...+++..+.. +.+...+..+...|.+.|++++|...|+++.+.. +.+
T Consensus 451 ~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~ 528 (1157)
T PRK11447 451 SIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PND 528 (1157)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC
Confidence 23444555555555444432 2233444444445555555555555555544321 112
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCH
Q 007194 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI---------TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444 (613)
Q Consensus 374 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---------t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~ 444 (613)
...+..+...+...++.++|+..++.+......++.. .+......+...|+.++|..+++. ..++.
T Consensus 529 ~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~ 603 (1157)
T PRK11447 529 PEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPST 603 (1157)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCc
Confidence 2222223333334444444444444332211111110 011223344555555555555541 12233
Q ss_pred HHHHHHHHHHHh--hHHHHHHhhhhhhcccCCCCccchhhh------------HHHHHHHHHHHHcCCCCcHHHHHHHHh
Q 007194 445 VMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWT------------SLALMVYREAIVAGTIPTVEVVSKVLG 510 (613)
Q Consensus 445 ~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~------------~~a~~~~~~m~~~g~~p~~~~~~~~l~ 510 (613)
..+..+-+.+.+ ++++|....+.....++. +...+. ..|...+++..+ ..|+.......++
T Consensus 604 ~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~---~~~a~~~la~~~~~~g~~~eA~~~l~~ll~--~~p~~~~~~~~la 678 (1157)
T PRK11447 604 RIDLTLADWAQQRGDYAAARAAYQRVLTREPG---NADARLGLIEVDIAQGDLAAARAQLAKLPA--TANDSLNTQRRVA 678 (1157)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--cCCCChHHHHHHH
Confidence 333444444433 556665555444333332 222222 236666665543 3555544333222
Q ss_pred c--cCCCCchhHHHHHHHHhCCChh-h------hhcccccccccccccchhHHHHHHHHHHh-CCCCCccccc
Q 007194 511 C--LQLPYNADIRERLVENLGVSAD-A------LKRSNLCSLIDGFGEYDPRAFSLLEEAAS-FGIVPCVSFK 573 (613)
Q Consensus 511 ~--~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~i~~~g~~~~~a~~~~~~a~~-~g~~~~~~~~ 573 (613)
. ...+...+....+.+.....|+ + ..+..+..+....|+ .++|...+++|.. .|+.|..|-.
T Consensus 679 ~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~-~~~A~~~y~~Al~~~~~~~~~p~~ 750 (1157)
T PRK11447 679 LAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQ-PQQALETYKDAMVASGITPTRPQD 750 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhcCCCCCCCCC
Confidence 1 1233333333333333333222 1 122222334445565 4678899999853 4566665543
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.88 E-value=7.7e-18 Score=192.57 Aligned_cols=388 Identities=11% Similarity=0.042 Sum_probs=297.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC--CCC---HHHHHH-----------
Q 007194 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPT---LSTFNM----------- 97 (613)
Q Consensus 34 ~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~---~~~~~~----------- 97 (613)
.++..|++++|+..|++..+.. |.+...+..+...+...|++++|+..|++.. .|+ ...|..
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 3457899999999999999877 7777778888888888999999999998754 222 122222
Q ss_pred -HHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007194 98 -LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (613)
Q Consensus 98 -li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 176 (613)
....+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|++.|++..+.. +.+...+..+...|. .+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hc
Confidence 2345678899999999999998874 4567778888899999999999999999988764 345666777777774 46
Q ss_pred CHHHHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcC
Q 007194 177 QVAKAFGAYGIMRSKNVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248 (613)
Q Consensus 177 ~~~~A~~~~~~m~~~g~~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g 248 (613)
+.++|..+++.+...... .....+..+...+...|++++|.+.|++..... +.+...+..+...|.+.|
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~---P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD---PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcC
Confidence 789998888766432100 011234556677888999999999999988642 334566778888999999
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHHhcCC
Q 007194 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV---------FLSALIDFAGHAGK 319 (613)
Q Consensus 249 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---------~~~~li~~~~~~g~ 319 (613)
++++|...++++.+.. +.++..+..+...+...++.++|...++.+......++.. .+......+...|+
T Consensus 510 ~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 9999999999988765 4566666666667788899999999998875443322221 12344567788999
Q ss_pred HHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 007194 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399 (613)
Q Consensus 320 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 399 (613)
.++|..+++. .+.+...+..+...+.+.|++++|...|++..+.. +.+...+..++..|...|++++|++.++.
T Consensus 589 ~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 589 EAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999998872 35566778889999999999999999999998864 44688899999999999999999999998
Q ss_pred HHhCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 007194 400 MKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKED 438 (613)
Q Consensus 400 m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (613)
..+. .| +..++..+..++...|++++|.+++++++..
T Consensus 663 ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 663 LPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred Hhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 8763 45 4456677778888999999999999998864
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=4.1e-17 Score=174.57 Aligned_cols=327 Identities=12% Similarity=0.045 Sum_probs=144.0
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007194 99 MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178 (613)
Q Consensus 99 i~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 178 (613)
+..+.+.|++++|+.+++...... +-+...+..++.+....|++++|.+.|+++.... +.+...+..+...+.+.|++
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCH
Confidence 344444555555555555444432 1122233333333444555555555555554432 22334444444455555555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 007194 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258 (613)
Q Consensus 179 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 258 (613)
++|...|+++.... +.+...+..+...+...|+.++|...+..+.... +.+...+..+ ..+.+.|++++|...++
T Consensus 127 ~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~---P~~~~a~~~~-~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 127 ATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV---PPRGDMIATC-LSFLNKSRLPEDHDLAR 201 (656)
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC---CCCHHHHHHH-HHHHHcCCHHHHHHHHH
Confidence 55555555554431 2223344444445555555555555554443221 1111111111 22444455555555555
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCC
Q 007194 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA----AFEILQEAKNQG 334 (613)
Q Consensus 259 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~ 334 (613)
.+.+....++...+..+...+.+.|++++|...+++..+.... +...+..+...+...|++++ |...++...+..
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 4444321122222333344444555555555555555444322 33444444444555555443 455555544432
Q ss_pred CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHH-HH
Q 007194 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT-YS 413 (613)
Q Consensus 335 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~ 413 (613)
+.+...+..+...+.+.|++++|...+++..+.. +.+...+..+...|.+.|++++|+..|+++.+. .|+... +.
T Consensus 281 -P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~ 356 (656)
T PRK15174 281 -SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNR 356 (656)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHH
Confidence 2334445555555555555555555555544432 122334444445555555555555555554442 233222 22
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHH
Q 007194 414 ILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 414 ~ll~a~~~~g~~~~a~~~~~~~~~ 437 (613)
.+..++...|+.++|...|++..+
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 223344555555555555555444
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=4e-17 Score=174.61 Aligned_cols=321 Identities=9% Similarity=0.010 Sum_probs=164.4
Q ss_pred HhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 007194 71 CKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147 (613)
Q Consensus 71 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 147 (613)
+.+.|++++|..+++.+. +.+...+..++.+....|+++.|...++.+.+.. +.+...+..+...+...|++++|.
T Consensus 52 ~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai 130 (656)
T PRK15174 52 CLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVA 130 (656)
T ss_pred HHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHH
Confidence 344455555555555432 2233334444444455566666666666655543 334445555555556666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 007194 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227 (613)
Q Consensus 148 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 227 (613)
..+++..... +.+...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|...++.+....
T Consensus 131 ~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~ 207 (656)
T PRK15174 131 DLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFF 207 (656)
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcC
Confidence 6666655442 2334455555555666666666666665554432 1112222222 23455566666666665554321
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCC
Q 007194 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF----ACSVYDDMTKKGVIPD 303 (613)
Q Consensus 228 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~p~ 303 (613)
+ .++......+...+.+.|++++|...+++..+.+ +.+...+..+...|...|++++ |...|++..+..+. +
T Consensus 208 -~-~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~ 283 (656)
T PRK15174 208 -A-LERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-N 283 (656)
T ss_pred -C-CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-C
Confidence 0 1122233333445555666666666666555543 3445555556666666666553 55556555554322 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHH
Q 007194 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV-STMNALIT 382 (613)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~ 382 (613)
...+..+...+.+.|++++|...+++..+.. +.+...+..+..+|.+.|++++|...|+++.+.+ |+. ..+..+..
T Consensus 284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~ 360 (656)
T PRK15174 284 VRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAA 360 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHH
Confidence 4455555555666666666666666555543 3334445555555666666666666666555432 332 22223344
Q ss_pred HHHcCCChhHHHHHHHHHHh
Q 007194 383 ALCDGDQLPKTMEVLSDMKS 402 (613)
Q Consensus 383 ~~~~~g~~~~A~~l~~~m~~ 402 (613)
++...|+.++|...|++..+
T Consensus 361 al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 361 ALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 55556666666666665544
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=1.4e-16 Score=171.11 Aligned_cols=393 Identities=12% Similarity=0.042 Sum_probs=271.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChH
Q 007194 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSE 109 (613)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 109 (613)
+.+.+.|++++|+..|++..+.. |. ..++..+...+...|++++|+..+++.. +.+...|..+..++...|+++
T Consensus 135 ~~~~~~~~~~~Ai~~y~~al~~~--p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 135 NKAYRNKDFNKAIKLYSKAIECK--PD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC--Cc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Confidence 44558899999999999998875 43 4566677778888899999999998754 456778899999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC---------------------------CCCCCH
Q 007194 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA---------------------------GIEPNV 162 (613)
Q Consensus 110 ~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------------------------g~~~~~ 162 (613)
+|+.-|......+ ..+......++..+........+...++.-... ...+..
T Consensus 212 eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (615)
T TIGR00990 212 DALLDLTASCIID-GFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEET 290 (615)
T ss_pred HHHHHHHHHHHhC-CCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccccc
Confidence 9998887665443 112111111111111110111111111100000 000000
Q ss_pred -HHHHHHHHH---HHhcCCHHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-HH
Q 007194 163 -HTYGALIDG---CAKAGQVAKAFGAYGIMRSKN-VKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HI 235 (613)
Q Consensus 163 -~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~ 235 (613)
..+..+... ....+++++|.+.|++....+ ..| +...|+.+...+...|++++|...|++.... .|+ ..
T Consensus 291 ~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l----~P~~~~ 366 (615)
T TIGR00990 291 GNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL----DPRVTQ 366 (615)
T ss_pred ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCcHH
Confidence 000001000 012367888999998888754 223 3456777778888889999999999888753 344 55
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007194 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (613)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 315 (613)
.|..+...+...|++++|...|+++.+.+ +.+..+|..+...+...|++++|...|++..+.... +...+..+...+.
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~ 444 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHH
Confidence 77778888888999999999998887765 566788888888999999999999999988876543 5666777788888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHcCCC
Q 007194 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV------STMNALITALCDGDQ 389 (613)
Q Consensus 316 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~~~li~~~~~~g~ 389 (613)
+.|++++|+..|+...+.. +.+...++.+...+...|++++|.+.|++..+.....+. ..++.....+...|+
T Consensus 445 ~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~ 523 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQD 523 (615)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhh
Confidence 8899999999999887753 556778888888999999999999999988765321111 112222233444688
Q ss_pred hhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 007194 390 LPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 438 (613)
Q Consensus 390 ~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (613)
+++|.+++++.... .|+ ...+..+...+.+.|++++|...|++..+.
T Consensus 524 ~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 524 FIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999887764 454 456788888899999999999999888763
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.85 E-value=4.1e-18 Score=165.59 Aligned_cols=417 Identities=13% Similarity=0.102 Sum_probs=261.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHH---hCCCCCHHHHHHHHHHHHcCCC
Q 007194 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK---LVPNPTLSTFNMLMSVCASSKD 107 (613)
Q Consensus 31 ~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~---~~~~~~~~~~~~li~~~~~~g~ 107 (613)
....+.+.|++.+|.+-....-.++ |.+.....++...+.+..+.+.....-. +..+.-..+|..+.+.+-..|+
T Consensus 54 lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 54 LAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhch
Confidence 3445558899999988766655555 2222222222222333223332221111 1112334567777777777777
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHH
Q 007194 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG-ALIDGCAKAGQVAKAFGAYG 186 (613)
Q Consensus 108 ~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~~~ 186 (613)
+++|+.+++.+.+.. +.....|..+..++...|+.+.|.+.|.+..+. .|+..... .+.......|+.++|...|.
T Consensus 132 ~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 132 LQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred HHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 888888777777653 334667777777777777777777777777665 45544333 33344445677777777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 007194 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNI 265 (613)
Q Consensus 187 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 265 (613)
+..+.. +--.+.|+.|...+-..|+...|++.|++... +.|+ ...|-.|...|...+.++.|...+.+.....
T Consensus 209 kAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk----ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr- 282 (966)
T KOG4626|consen 209 KAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK----LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR- 282 (966)
T ss_pred HHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhc----CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-
Confidence 776652 22245677777777777777777777777664 2444 3466667777777777777777777666543
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHH
Q 007194 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345 (613)
Q Consensus 266 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 345 (613)
+...+++..|...|...|..+.|+..+++..+..+. =...|+.+..++-..|++.+|...+....... +......+.|
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NL 360 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNL 360 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHH
Confidence 444566777777777777777777777777665322 23567777777777777777777777776653 3345567777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcC
Q 007194 346 MGACSNAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSILLVACERKD 423 (613)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g 423 (613)
...|...|.+++|..+|....+. .|. ....|.|...|-+.|+.++|+..+++.++ ++|+- ..|+.+-..|-..|
T Consensus 361 gni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhh
Confidence 77777777777777777776653 344 34567777777777777777777777766 56653 55667777777777
Q ss_pred CHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhhHHHHHHhhhhhhc
Q 007194 424 DVEVGLMLLSQAKEDGVIPNLV-MFKCIIGMCSRRYEKARTLNEHVLS 470 (613)
Q Consensus 424 ~~~~a~~~~~~~~~~g~~p~~~-~~~~li~~~~~~~~~a~~~~~~~~~ 470 (613)
+++.|.+.+.+.+. +.|... ..+-|-+. |..+|.+.+++.+
T Consensus 437 ~v~~A~q~y~rAI~--~nPt~AeAhsNLasi----~kDsGni~~AI~s 478 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQ--INPTFAEAHSNLASI----YKDSGNIPEAIQS 478 (966)
T ss_pred hHHHHHHHHHHHHh--cCcHHHHHHhhHHHH----hhccCCcHHHHHH
Confidence 77777777777765 445422 22333333 4445555444433
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.85 E-value=4e-18 Score=165.67 Aligned_cols=388 Identities=14% Similarity=0.144 Sum_probs=315.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChHHHHH
Q 007194 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQ 113 (613)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 113 (613)
+..+++...+--....+.. |......+.+..++...|++++|+.+|+.+. +..+..|..+..++...|+.+.|.+
T Consensus 94 q~~r~d~s~a~~~~a~r~~--~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~ 171 (966)
T KOG4626|consen 94 QGSRLDKSSAGSLLAIRKN--PQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQ 171 (966)
T ss_pred cccchhhhhhhhhhhhhcc--chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHH
Confidence 4445555554444444444 6666777788889999999999999998765 4567789999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHH-HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007194 114 VLRLVQEAGLKADCKLY-TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (613)
Q Consensus 114 l~~~m~~~g~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 192 (613)
.|....+. .|+.... +.+...+...|++.+|..-|.+.++.. +--...|+.|...+-..|+...|++-|++....
T Consensus 172 ~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl- 247 (966)
T KOG4626|consen 172 CFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL- 247 (966)
T ss_pred HHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC-
Confidence 99988875 5665443 445555666899999999998887763 223567999999999999999999999999876
Q ss_pred CCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHH
Q 007194 193 VKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270 (613)
Q Consensus 193 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 270 (613)
.|+ ...|-.|-..|...+.+++|...+.+.... .|+ ...+..+...|-..|.++.|+..+++..+.. +.-+.
T Consensus 248 -dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l----rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~ 321 (966)
T KOG4626|consen 248 -DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL----RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPD 321 (966)
T ss_pred -CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc----CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchH
Confidence 444 557888999999999999999999888753 454 5677778888999999999999999998875 44578
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 007194 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350 (613)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 350 (613)
.|+.|..++-..|+..+|...+.+.+..... -..+.+.|...|...|.+++|..+|.....-. +--....+.|...|-
T Consensus 322 Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~k 399 (966)
T KOG4626|consen 322 AYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYK 399 (966)
T ss_pred HHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHH
Confidence 9999999999999999999999998886433 45678889999999999999999999887753 333567889999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHH
Q 007194 351 NAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVG 428 (613)
Q Consensus 351 ~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 428 (613)
+.|++++|..-+++..+. +|+ ..+|+.+...|-..|+.+.|++.+.+.+. +.|. ...++.|.+.+-.+|++.+|
T Consensus 400 qqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~A 475 (966)
T KOG4626|consen 400 QQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEA 475 (966)
T ss_pred hcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHH
Confidence 999999999999998874 677 57899999999999999999999998887 5675 46788899999999999999
Q ss_pred HHHHHHHHHcCCCCCH
Q 007194 429 LMLLSQAKEDGVIPNL 444 (613)
Q Consensus 429 ~~~~~~~~~~g~~p~~ 444 (613)
++-++..++ ++||.
T Consensus 476 I~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 476 IQSYRTALK--LKPDF 489 (966)
T ss_pred HHHHHHHHc--cCCCC
Confidence 999999988 55653
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=1.7e-16 Score=173.61 Aligned_cols=403 Identities=10% Similarity=0.010 Sum_probs=304.1
Q ss_pred hhHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhC---CCCCHHHHHHHHHHH
Q 007194 27 EQLHSYNRL-IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVC 102 (613)
Q Consensus 27 ~~~~~~~~l-~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~ 102 (613)
..+.-|..+ ...|+.++|++++.+..... |.....+..+...+...|++++|..+|++. .+.+...+..+...+
T Consensus 16 ~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l 93 (765)
T PRK10049 16 NQIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTL 93 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 344555444 48999999999999998744 556666777888889999999999999984 356677788888999
Q ss_pred HcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007194 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182 (613)
Q Consensus 103 ~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 182 (613)
...|++++|+..++...+.. +.+.. +..+..++...|+.++|...++++.+.. +.+...+..+...+...+..+.|+
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHH
Confidence 99999999999999999874 55666 8889999999999999999999999874 445667777888888999999999
Q ss_pred HHHHHHHhCCCCCCH------HHHHHHHHHHH-----ccCCH---HHHHHHHHHHhhCCCCCCCCHH-HH----HHHHHH
Q 007194 183 GAYGIMRSKNVKPDR------VVFNALITACG-----QSGAV---DRAFDVLAEMNAEVHPVDPDHI-TI----GALMKA 243 (613)
Q Consensus 183 ~~~~~m~~~g~~p~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~~~~~~~~~~-~~----~~ll~~ 243 (613)
..++.... .|+. .....++.... ..+++ ++|++.++.+.... +..|+.. .+ ...+..
T Consensus 171 ~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~-~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 171 GAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALW-HDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhc-ccCCccchHHHHHHHHHHHH
Confidence 99987664 2321 11222233222 12234 77888888887531 1223221 11 111334
Q ss_pred HHhcCChhHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCC
Q 007194 244 CANAGQVDRAREVYKMIHKYNIK-GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP---DEVFLSALIDFAGHAGK 319 (613)
Q Consensus 244 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~ 319 (613)
+...|++++|+..|+.+.+.+-+ |+ ..-..+...|...|++++|+.+|+++....... .......+..++...|+
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc
Confidence 56779999999999999887622 22 223335778999999999999999987654321 13445666778899999
Q ss_pred HHHHHHHHHHHHHCCC-----------CcC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007194 320 VEAAFEILQEAKNQGI-----------SVG---IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (613)
Q Consensus 320 ~~~A~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (613)
+++|...++.+..... .|+ ...+..+...+...|+.++|.++++++.... +.+...+..+...+.
T Consensus 326 ~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 326 YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQ 404 (765)
T ss_pred HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 9999999999987631 122 2345677788899999999999999998764 456788999999999
Q ss_pred cCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCH
Q 007194 386 DGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444 (613)
Q Consensus 386 ~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~ 444 (613)
..|++++|++.+++.... .|+ ...+......+...|++++|..+++++++. .|+.
T Consensus 405 ~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~ 460 (765)
T PRK10049 405 ARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQD 460 (765)
T ss_pred hcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCC
Confidence 999999999999999884 576 556667777889999999999999999973 4443
No 19
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.83 E-value=1e-15 Score=142.90 Aligned_cols=399 Identities=16% Similarity=0.192 Sum_probs=290.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh-----------------------------hhHHHHHHHHH
Q 007194 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK-----------------------------SQKAIKEAFRF 83 (613)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~-----------------------------~~~~~~~A~~~ 83 (613)
-.+|.+|.+..+.-+++.|...|+ +-...+...+.++.. +.|++ |- +
T Consensus 123 ~kmIS~~EvKDs~ilY~~m~~e~~-~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v--Ad-L 198 (625)
T KOG4422|consen 123 LKMISSREVKDSCILYERMRSENV-DVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV--AD-L 198 (625)
T ss_pred HHHHhhcccchhHHHHHHHHhcCC-CCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH--HH-H
Confidence 345689999999999999999986 333333333333211 11222 22 5
Q ss_pred HHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 007194 84 FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH 163 (613)
Q Consensus 84 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 163 (613)
+-+..+.+..++.+||.++++-...+.|.+++++......+.+..+||.+|.+-+-. ...++..+|....+.||..
T Consensus 199 ~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~ 274 (625)
T KOG4422|consen 199 LFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLF 274 (625)
T ss_pred HHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchH
Confidence 555666788899999999999999999999999998887799999999999875433 3388999999999999999
Q ss_pred HHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHhhC--CCCCC----C
Q 007194 164 TYGALIDGCAKAGQVAK----AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR-AFDVLAEMNAE--VHPVD----P 232 (613)
Q Consensus 164 ~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~--~~~~~----~ 232 (613)
|+|+++++.++.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++... +..++ .
T Consensus 275 TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~ 354 (625)
T KOG4422|consen 275 TFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPT 354 (625)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCc
Confidence 99999999999998765 46788899999999999999999999999887643 44455544331 11222 2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 007194 233 DHITIGALMKACANAGQVDRAREVYKMIHKYN----IKGT---PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305 (613)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 305 (613)
|..-|.+.+..|.+..+.+.|.++........ +.|+ ..-|..+....|+....+.-...|+.|.-.-.-|+..
T Consensus 355 d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~ 434 (625)
T KOG4422|consen 355 DNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQ 434 (625)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCch
Confidence 45667788889999999999999887665431 2222 2236678888899999999999999999888888999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcC-CH-------------HHHHHHHH-------H
Q 007194 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK-NW-------------QKALELYE-------H 364 (613)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~-------------~~A~~~~~-------~ 364 (613)
+...++++..-.+.++-..+++..++..|...+.....-++..+++.. .. +-|..+++ +
T Consensus 435 ~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R 514 (625)
T KOG4422|consen 435 TMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIR 514 (625)
T ss_pred hHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 999999999999999988888888887775544444444444444433 10 01111221 2
Q ss_pred HHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC----CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCC
Q 007194 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG----LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440 (613)
Q Consensus 365 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~ 440 (613)
+.+. .......+...-.+.+.|+.++|.++|....+.+ ..|......-++++..+..+...|...++.|...+.
T Consensus 515 ~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 515 QRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred HHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 2222 3445566777778888999999999988876543 234444455667777788888888888888876544
Q ss_pred C
Q 007194 441 I 441 (613)
Q Consensus 441 ~ 441 (613)
.
T Consensus 593 ~ 593 (625)
T KOG4422|consen 593 P 593 (625)
T ss_pred h
Confidence 3
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.83 E-value=1.3e-15 Score=163.58 Aligned_cols=346 Identities=12% Similarity=0.010 Sum_probs=200.0
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007194 97 MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (613)
Q Consensus 97 ~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 176 (613)
.....+.+.|++++|+..|+...+. .|+...|..+..+|.+.|++++|++.+++..+.. +.+...|..+..+|...|
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 3444555666666666666665543 4555556666666666666666666666665543 234455666666666666
Q ss_pred CHHHHHHHHHHHHhCCC-----------------------------CCCHHHHHHH------------------------
Q 007194 177 QVAKAFGAYGIMRSKNV-----------------------------KPDRVVFNAL------------------------ 203 (613)
Q Consensus 177 ~~~~A~~~~~~m~~~g~-----------------------------~p~~~~~~~l------------------------ 203 (613)
++++|+..|......+- +++...+..+
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDE 288 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccc
Confidence 66666554443322110 0000000000
Q ss_pred ------HHH------HHccCCHHHHHHHHHHHhhCCCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHH
Q 007194 204 ------ITA------CGQSGAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270 (613)
Q Consensus 204 ------i~~------~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 270 (613)
+.. ....+++++|.+.|+...... ...| +...+..+...+...|++++|+..|++..+.. +....
T Consensus 289 ~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~-~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~ 366 (615)
T TIGR00990 289 ETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG-KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQ 366 (615)
T ss_pred ccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHH
Confidence 000 011245667777777666432 1122 34456666666777777777777777776654 33455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 007194 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350 (613)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 350 (613)
.|..+...+...|++++|...|++..+.... +...+..+...+...|++++|...|++..+.. +.+...+..+...+.
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHH
Confidence 6777777777777777777777777665432 45666667777777777777777777776654 445566666777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH-HH-------HHHHHHHHhhc
Q 007194 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-IT-------YSILLVACERK 422 (613)
Q Consensus 351 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t-------~~~ll~a~~~~ 422 (613)
+.|++++|...|++..+.. +.+...|+.+...+...|++++|++.|++..+. .|+. .+ +...+..+...
T Consensus 445 ~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~~ 521 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALALFQWK 521 (615)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHHHHHHh
Confidence 7777777777777766542 234566777777777777777777777776653 2321 11 11111222335
Q ss_pred CCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHH
Q 007194 423 DDVEVGLMLLSQAKEDGVIPNL-VMFKCIIGMC 454 (613)
Q Consensus 423 g~~~~a~~~~~~~~~~g~~p~~-~~~~~li~~~ 454 (613)
|++++|.+++++..+. .|+. ..+..+...+
T Consensus 522 ~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~ 552 (615)
T TIGR00990 522 QDFIEAENLCEKALII--DPECDIAVATMAQLL 552 (615)
T ss_pred hhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH
Confidence 7777777777776653 3333 2344444443
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.81 E-value=1e-14 Score=156.55 Aligned_cols=441 Identities=13% Similarity=0.110 Sum_probs=300.4
Q ss_pred cccChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchH-HHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHH-HHHH
Q 007194 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDK-VYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST-FNML 98 (613)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~l 98 (613)
+|..+.......-...++|+++.|++.|++..+.+ |.+. .+. -++.++...|+.++|+.++++...|+... +..+
T Consensus 30 ~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~ll 106 (822)
T PRK14574 30 NPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLA 106 (822)
T ss_pred CccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHH
Confidence 34444433333333449999999999999999987 5542 222 45556666799999999999987654333 3333
Q ss_pred --HHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007194 99 --MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (613)
Q Consensus 99 --i~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 176 (613)
...+...|++++|+++|+.+.+.. +.+...+..++..+...++.++|++.++++... .|+...+..++..+...+
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~ 183 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATD 183 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcc
Confidence 457888899999999999999875 556777888899999999999999999999876 566666644544444466
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHH------HHHHHHH---H--
Q 007194 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI------GALMKAC---A-- 245 (613)
Q Consensus 177 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~------~~ll~~~---~-- 245 (613)
+..+|++.++++.+.. +-+...+..+..++.+.|-...|.++..+-.. -+.+....+ ..+++.- .
T Consensus 184 ~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~---~f~~~~~~~l~~~~~a~~vr~a~~~~~~ 259 (822)
T PRK14574 184 RNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPN---LVSAEHYRQLERDAAAEQVRMAVLPTRS 259 (822)
T ss_pred hHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc---ccCHHHHHHHHHHHHHHHHhhccccccc
Confidence 6667999999999884 44566778888999999998888877765321 111211111 1111100 0
Q ss_pred hcCC---hhHHHHHHHHHHhc--CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007194 246 NAGQ---VDRAREVYKMIHKY--NIKGTPEVY----TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (613)
Q Consensus 246 ~~g~---~~~A~~~~~~~~~~--~~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 316 (613)
...+ .+.|+.-++.+... ..++....| --.+-++...|++.++++.|+.+...+......+-..+.++|..
T Consensus 260 ~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~ 339 (822)
T PRK14574 260 ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYID 339 (822)
T ss_pred chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHh
Confidence 1122 34455555555542 112221222 23456677888999999999999888755345677888889999
Q ss_pred cCCHHHHHHHHHHHHHCC-----CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------------CCCCH-HHH
Q 007194 317 AGKVEAAFEILQEAKNQG-----ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK-------------LKPTV-STM 377 (613)
Q Consensus 317 ~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------------~~~~~-~~~ 377 (613)
.+++++|..++..+.... .+++......|.-+|...+++++|..+++.+.+.. ..||- ..+
T Consensus 340 ~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~ 419 (822)
T PRK14574 340 RRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQ 419 (822)
T ss_pred cCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHH
Confidence 999999999999886643 23344446788888889999999999999887621 12232 234
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHH-
Q 007194 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL-VMFKCIIGMCS- 455 (613)
Q Consensus 378 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~-~~~~~li~~~~- 455 (613)
..++..+...|+..+|.+.++++.... +-|......+.+.+...|.+.+|++.++.... +.|+. .+.......+.
T Consensus 420 ~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~ 496 (822)
T PRK14574 420 TLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMA 496 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHh
Confidence 455677888899999999999987742 34777888888888999999999999966655 34543 23333332222
Q ss_pred -hhHHHHHHhhhhhhcccCC
Q 007194 456 -RRYEKARTLNEHVLSFNSG 474 (613)
Q Consensus 456 -~~~~~a~~~~~~~~~~~~~ 474 (613)
+.+.+|..+.+.+....+.
T Consensus 497 l~e~~~A~~~~~~l~~~~Pe 516 (822)
T PRK14574 497 LQEWHQMELLTDDVISRSPE 516 (822)
T ss_pred hhhHHHHHHHHHHHHhhCCC
Confidence 2566776666665555444
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.79 E-value=5.8e-15 Score=161.57 Aligned_cols=391 Identities=13% Similarity=0.077 Sum_probs=283.2
Q ss_pred HHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 007194 67 FFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143 (613)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 143 (613)
.+.+..-.|+.++|++++.+.. +.+...+..+...+...|++++|..+++...+.. +.+...+..+...+...|++
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence 3455666788999999998754 3455578999999999999999999999988764 55677788899999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 007194 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (613)
Q Consensus 144 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 223 (613)
++|...+++..+.. +.+.. +..+...+...|+.++|+..++++.+.. +.+...+..+..++...+..++|++.++..
T Consensus 100 ~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 100 DEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 99999999998773 44566 8889999999999999999999999873 335556667788888899999999999876
Q ss_pred hhCCCCCCCCH------HHHHHHHHHHH-----hcCCh---hHHHHHHHHHHhc-CCCCCH-HHH----HHHHHHHHhcC
Q 007194 224 NAEVHPVDPDH------ITIGALMKACA-----NAGQV---DRAREVYKMIHKY-NIKGTP-EVY----TIAINCCSQTG 283 (613)
Q Consensus 224 ~~~~~~~~~~~------~~~~~ll~~~~-----~~g~~---~~A~~~~~~~~~~-~~~~~~-~~~----~~li~~~~~~g 283 (613)
.. .|+. .....++..+. ..+++ ++|++.++.+.+. ...|+. ..+ ...+..+...|
T Consensus 177 ~~-----~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g 251 (765)
T PRK10049 177 NL-----TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD 251 (765)
T ss_pred CC-----CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh
Confidence 53 2331 11122222222 12233 6788888888754 112221 111 11134456779
Q ss_pred CHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc---CHHhHHHHHHHHHhcCCHHHHH
Q 007194 284 DWEFACSVYDDMTKKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV---GIISYSSLMGACSNAKNWQKAL 359 (613)
Q Consensus 284 ~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~ 359 (613)
++++|+..|+.+.+.+.. |+. ....+..+|...|++++|...|+.+.+..... .......+..++...|++++|.
T Consensus 252 ~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~ 330 (765)
T PRK10049 252 RYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGAL 330 (765)
T ss_pred hHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHH
Confidence 999999999999987642 432 22235678999999999999999987654111 1345666777889999999999
Q ss_pred HHHHHHHhCCC-----------CCC---HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCH
Q 007194 360 ELYEHMKSIKL-----------KPT---VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425 (613)
Q Consensus 360 ~~~~~m~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 425 (613)
.+++.+.+... .|+ ...+..+...+...|+.++|+++++++... .+-+...+..+...+...|++
T Consensus 331 ~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~ 409 (765)
T PRK10049 331 TVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGWP 409 (765)
T ss_pred HHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCH
Confidence 99999986421 123 234566778889999999999999999875 233567788888999999999
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHh--hHHHHHHhhhhhhc
Q 007194 426 EVGLMLLSQAKEDGVIPNL-VMFKCIIGMCSR--RYEKARTLNEHVLS 470 (613)
Q Consensus 426 ~~a~~~~~~~~~~g~~p~~-~~~~~li~~~~~--~~~~a~~~~~~~~~ 470 (613)
++|++.++++++ ..|+. ..+..+...+.+ ++++|..+.+....
T Consensus 410 ~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 410 RAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999987 34653 333233222222 56666666555443
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.76 E-value=1.1e-12 Score=144.10 Aligned_cols=281 Identities=10% Similarity=0.027 Sum_probs=153.8
Q ss_pred HHhcCChhHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCC---HHHHHH----------------------HHHHHH
Q 007194 244 CANAGQVDRAREVYKMIHKY--NIKGTPEVYTIAINCCSQTGD---WEFACS----------------------VYDDMT 296 (613)
Q Consensus 244 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~---~~~A~~----------------------~~~~m~ 296 (613)
..+.|+.++|.++|+..... +...+....+-++..|...+. ..++.. ......
T Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (987)
T PRK09782 386 LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIV 465 (987)
T ss_pred HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHH
Confidence 44567888888888776552 122344455566666665544 222211 222222
Q ss_pred HC-CC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 007194 297 KK-GV-IP--DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372 (613)
Q Consensus 297 ~~-~~-~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 372 (613)
.. +. ++ +...|..+..++.. ++.++|...+....... |+......+...+...|++++|...|+++... .|
T Consensus 466 ~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p 540 (987)
T PRK09782 466 RLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DM 540 (987)
T ss_pred HhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CC
Confidence 21 11 12 34555555555554 67777777666665543 44333333444445777788887777776543 34
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007194 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451 (613)
Q Consensus 373 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li 451 (613)
+...+..+...+.+.|++++|...+++..+.. |+. ..+..+.......|++++|...+++.++ ..|+...+..+.
T Consensus 541 ~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA 616 (987)
T PRK09782 541 SNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARA 616 (987)
T ss_pred CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 44556666667777777777777777777643 433 3333334444556778888777777776 345666666665
Q ss_pred HHHHh--hHHHHHHhhhhhhcccCCCCccc---------hhhhHHHHHHHHHHHHcCCCCcHHHHHHHHhcc--CCCCch
Q 007194 452 GMCSR--RYEKARTLNEHVLSFNSGRPQIE---------NKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL--QLPYNA 518 (613)
Q Consensus 452 ~~~~~--~~~~a~~~~~~~~~~~~~~~~~~---------~~~~~~a~~~~~~m~~~g~~p~~~~~~~~l~~~--~~~~~~ 518 (613)
.++.+ ++++|....+.....++..+... .+....|+..|++.++. .|+...+...++.+ ..+.-.
T Consensus 617 ~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~ 694 (987)
T PRK09782 617 TIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMA 694 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHH
Confidence 55544 55665555444433333322110 11123466666666553 57766555444433 234334
Q ss_pred hHHHHHHHHhCCChhhh
Q 007194 519 DIRERLVENLGVSADAL 535 (613)
Q Consensus 519 ~~~~~~~~~~~~~~~~~ 535 (613)
+....+.+...+.|+..
T Consensus 695 eA~~~l~~Al~l~P~~a 711 (987)
T PRK09782 695 ATQHYARLVIDDIDNQA 711 (987)
T ss_pred HHHHHHHHHHhcCCCCc
Confidence 45555556666666543
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.73 E-value=6.4e-12 Score=138.07 Aligned_cols=446 Identities=14% Similarity=0.058 Sum_probs=293.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhh-hHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHH
Q 007194 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS-QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEG 110 (613)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 110 (613)
...+++.|++++|+.++.++.+.+ +.+......+..++.. .++ ++|..+++.....++..+..+...+.+.|+.++
T Consensus 189 ~rlY~~l~dw~~Ai~lL~~L~k~~--pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~ 265 (987)
T PRK09782 189 LQRAIYLKQWSQADTLYNEARQQN--TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKAR 265 (987)
T ss_pred HHHHHHHhCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHH
Confidence 456678999999999999999998 5555555556556665 355 888888776556788999999999999999999
Q ss_pred HHHHHHHHHHcCCC-CCHHHH------------------------------HHHHHHHHHcCChhHHHHHHH--------
Q 007194 111 AFQVLRLVQEAGLK-ADCKLY------------------------------TTLITTCAKSGKVDAMFEVFH-------- 151 (613)
Q Consensus 111 A~~l~~~m~~~g~~-~~~~~~------------------------------~~li~~~~~~g~~~~a~~~~~-------- 151 (613)
|..+++.+...-.. |+..+| -.++..+.+.++++.+.++.+
T Consensus 266 A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (987)
T PRK09782 266 LQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEML 345 (987)
T ss_pred HHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHH
Confidence 99999987643211 222222 122455556666665554422
Q ss_pred ---------------------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C-CCCCHHHHHHHHHHHH
Q 007194 152 ---------------------EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-N-VKPDRVVFNALITACG 208 (613)
Q Consensus 152 ---------------------~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g-~~p~~~~~~~li~~~~ 208 (613)
.|.+.. +-+....-.+.-...+.|+.++|.++|+..... + -.++...-.-++..|.
T Consensus 346 ~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 424 (987)
T PRK09782 346 EERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLE 424 (987)
T ss_pred HHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHH
Confidence 111110 112222333333445678889999999888762 1 2233344446777777
Q ss_pred ccCC---HHHHHHH----------------------HHHHhhCCCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 007194 209 QSGA---VDRAFDV----------------------LAEMNAEVHPVDP--DHITIGALMKACANAGQVDRAREVYKMIH 261 (613)
Q Consensus 209 ~~g~---~~~A~~~----------------------~~~m~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 261 (613)
+.+. ..++..+ ...........++ +...+..+..++.. ++.++|...+.+..
T Consensus 425 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al 503 (987)
T PRK09782 425 SHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAE 503 (987)
T ss_pred hCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHH
Confidence 6655 2233222 1111111111133 56677777777766 78888999887777
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHh
Q 007194 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 341 (613)
Q Consensus 262 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 341 (613)
... |+......+...+...|++++|...|+++... .|+...+..+...+.+.|+.++|...++...+.. +.+...
T Consensus 504 ~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l 578 (987)
T PRK09782 504 QRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNAL 578 (987)
T ss_pred HhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHH
Confidence 654 44333334455556899999999999987665 3344456666778888999999999999988765 333444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHh
Q 007194 342 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACE 420 (613)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~ 420 (613)
+..+.....+.|++++|...+++..+. .|+...|..+...+.+.|++++|+..+++.... .|+ ...+..+..++.
T Consensus 579 ~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~ 654 (987)
T PRK09782 579 YWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALW 654 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 444444555669999999999999875 467888999999999999999999999998884 564 566777778899
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh--hHHHHHHhhhhhhcccCCCCc--cchhhhHHHHHHHHHH
Q 007194 421 RKDDVEVGLMLLSQAKEDGVIPN-LVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQ--IENKWTSLALMVYREA 493 (613)
Q Consensus 421 ~~g~~~~a~~~~~~~~~~g~~p~-~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~~~m 493 (613)
..|+.++|+..+++..+. .|+ ...+..+-.++.. ++++|....+.....++.... ...+|...+-.-|++.
T Consensus 655 ~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a 730 (987)
T PRK09782 655 DSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRL 730 (987)
T ss_pred HCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHH
Confidence 999999999999999874 343 4444455444443 677776665554444443322 2234444444444443
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.73 E-value=2e-13 Score=140.44 Aligned_cols=467 Identities=12% Similarity=0.065 Sum_probs=279.5
Q ss_pred ccccChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-chHHHHHHHHHHHhhhHHHHHHHHHHHhCC--CCCH--HH
Q 007194 20 NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLD-MDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTL--ST 94 (613)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~--~~ 94 (613)
.+++++..-.+..|.+.-.|++..+..+.+.+....... .-..-+..+++.+-..|++++|..+|-+.. .++. ..
T Consensus 265 ~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~ 344 (1018)
T KOG2002|consen 265 ENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLP 344 (1018)
T ss_pred hcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccc
Confidence 345566666666777777777777777777776654211 111123345566666777777777775543 2222 23
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----ChhHHHHHHHHHHHC--------------
Q 007194 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG----KVDAMFEVFHEMVNA-------------- 156 (613)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~-------------- 156 (613)
+--+...+...|+++.+...|+.+.+.. +.+..+...|...|+..+ ..+.|..+..+..+.
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql 423 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQL 423 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3345566777777777777777766652 334445555555555443 334444444443332
Q ss_pred -----------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCH------HHHHHHH
Q 007194 157 -----------------------GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK---NVKPDR------VVFNALI 204 (613)
Q Consensus 157 -----------------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~------~~~~~li 204 (613)
+-.+-....|.+...+...|+++.|...|...... ...+|. .+--.+.
T Consensus 424 ~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 424 LEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred HHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 22333444444444455555555555555544432 111111 1111123
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 007194 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283 (613)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 283 (613)
..+-..++.+.|.+.|..+... .|. +..|.-++.+....+...+|...++.....+ ..++.+++.+...+.+..
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilke----hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~ 578 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKE----HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKS 578 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHH----CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhh
Confidence 3333344555555555555443 222 1122222222223356667777777776665 566777888888888888
Q ss_pred CHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 007194 284 DWEFACSVYDDMTKK-GVIPDEVFLSALIDFAGH------------AGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350 (613)
Q Consensus 284 ~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 350 (613)
.+..|.+-|....+. ...+|..+.-+|.+.|.+ .+..++|+++|.++.+.. +.|...-|-+.-.++
T Consensus 579 ~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA 657 (1018)
T KOG2002|consen 579 EWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLA 657 (1018)
T ss_pred hhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhh
Confidence 888888877666543 223577777777765553 245678999999988876 678888888888999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 007194 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS-LGLCPNTITYSILLVACERKDDVEVGL 429 (613)
Q Consensus 351 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~ 429 (613)
..|++.+|..+|.++.+... .+..+|-.+.++|...|++..|+++|+...+ .+-.-+......|..++...|.+.+|.
T Consensus 658 ~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak 736 (1018)
T KOG2002|consen 658 EKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAK 736 (1018)
T ss_pred hccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999999987642 3456788899999999999999999988554 443446777888889999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhhHHHHHHhhhhhhcccCCCC---ccchhhhHHHHHHHHHHHHcCCCCcH
Q 007194 430 MLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRP---QIENKWTSLALMVYREAIVAGTIPTV 502 (613)
Q Consensus 430 ~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~a~~~~~~m~~~g~~p~~ 502 (613)
+...........-..+.+|..+-+ ...|..+.. -..+.. ...+.-...|.++|.+|...+-.|=+
T Consensus 737 ~~ll~a~~~~p~~~~v~FN~a~v~----kkla~s~lr----~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~r~~ 804 (1018)
T KOG2002|consen 737 EALLKARHLAPSNTSVKFNLALVL----KKLAESILR----LEKRTLEEVLEAVKELEEARRLFTELSKNGDKRIS 804 (1018)
T ss_pred HHHHHHHHhCCccchHHhHHHHHH----HHHHHHHHh----cccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 988888764444444556655433 111111111 011000 01112233588999999887655433
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.71 E-value=2e-12 Score=139.00 Aligned_cols=398 Identities=10% Similarity=0.060 Sum_probs=282.6
Q ss_pred HHHHhhhHHHHHHHHHHHhCC--CCCH-HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh
Q 007194 68 FNVCKSQKAIKEAFRFFKLVP--NPTL-STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144 (613)
Q Consensus 68 ~~~~~~~~~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 144 (613)
+-...+.|+++.|+..|.+.. .|+. .....++..+...|+.++|+..+++..... +........+...|...|+++
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHH
Confidence 334567788999999999876 3332 123378888889999999999999988221 233444444466888899999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 007194 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224 (613)
Q Consensus 145 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (613)
+|.++|+++.+.. +.+...+..++..|...++.++|++.++++... .|+...+..++..+...++..+|++.++++.
T Consensus 120 ~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 120 QALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 9999999999875 445677788889999999999999999999876 5666666555455545666767999999998
Q ss_pred hCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHH------HHHHHH-----HHhcCCH---HHHHH
Q 007194 225 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY------TIAINC-----CSQTGDW---EFACS 290 (613)
Q Consensus 225 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------~~li~~-----~~~~g~~---~~A~~ 290 (613)
... +.+...+..+..+..+.|-...|.++...-+.. +.+....+ ..++.. -....++ +.|+.
T Consensus 197 ~~~---P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala 272 (822)
T PRK14574 197 RLA---PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA 272 (822)
T ss_pred HhC---CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 752 345667788888999999999998877664422 11111111 111110 0112333 34455
Q ss_pred HHHHHHHC-CCCCCH-HHH-H---HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 007194 291 VYDDMTKK-GVIPDE-VFL-S---ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364 (613)
Q Consensus 291 ~~~~m~~~-~~~p~~-~~~-~---~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 364 (613)
-++.+... +..|.. ..| . -.+-++...|+..++++.++.+...+.+....+-..+.++|...+..++|..+++.
T Consensus 273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~ 352 (822)
T PRK14574 273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSS 352 (822)
T ss_pred HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 55555441 222322 222 2 22446778899999999999999988776677889999999999999999999999
Q ss_pred HHhCC-----CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC-------------CCCCHHH-HHHHHHHHhhcCCH
Q 007194 365 MKSIK-----LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-------------LCPNTIT-YSILLVACERKDDV 425 (613)
Q Consensus 365 m~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-------------~~p~~~t-~~~ll~a~~~~g~~ 425 (613)
+.... ..++......|..+|...+++++|..+++.+.+.- ..||-.. +..++..+...|++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl 432 (822)
T PRK14574 353 LYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDL 432 (822)
T ss_pred HhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCH
Confidence 86542 12344446789999999999999999999998731 1123333 44556778999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--hHHHHHHhhhhhhcccCC
Q 007194 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSG 474 (613)
Q Consensus 426 ~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~ 474 (613)
.+|.+.++.+... -+-|..+...+-+.+.. ...+|..+.+.....++.
T Consensus 433 ~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~ 482 (822)
T PRK14574 433 PTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVESLAPR 482 (822)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc
Confidence 9999999999864 23466677777777654 788888888776666554
No 27
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.68 E-value=1.5e-13 Score=129.45 Aligned_cols=409 Identities=14% Similarity=0.208 Sum_probs=276.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHh----CCCCC----HHHHHHHHHHHHcCCCh
Q 007194 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL----VPNPT----LSTFNMLMSVCASSKDS 108 (613)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~----~~~~~~li~~~~~~g~~ 108 (613)
.+....+|+..++-+.+...+|..-.+...+...+.+.+.+.+|+++|.. +|.-+ +...|.+.-.+.+.|++
T Consensus 213 ~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy 292 (840)
T KOG2003|consen 213 ANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQY 292 (840)
T ss_pred hhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccc
Confidence 46678899999999999888887777766777778888899999999865 34222 33455556668899999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC------------CCHHHHHHHH-----HH
Q 007194 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE------------PNVHTYGALI-----DG 171 (613)
Q Consensus 109 ~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~------------~~~~~~~~li-----~~ 171 (613)
+.|..-|+...+. .|+..+--.|+-++...|+-++..+.|.+|+..... |+....|.-| .-
T Consensus 293 ~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~ 370 (840)
T KOG2003|consen 293 DDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKN 370 (840)
T ss_pred hhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHH
Confidence 9999999988875 678776656666677789999999999999864322 2333332222 11
Q ss_pred HHhcC--CHHHHHHHHHHHHhCCCCCCHHH---H----------H--------HHHHHHHccCCHHHHHHHHHHHhhCCC
Q 007194 172 CAKAG--QVAKAFGAYGIMRSKNVKPDRVV---F----------N--------ALITACGQSGAVDRAFDVLAEMNAEVH 228 (613)
Q Consensus 172 ~~~~g--~~~~A~~~~~~m~~~g~~p~~~~---~----------~--------~li~~~~~~g~~~~A~~~~~~m~~~~~ 228 (613)
+-+.. +.++++-.--++..--+.||-.. | . .-...+.+.|+++.|.+++.-...+..
T Consensus 371 ~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdn 450 (840)
T KOG2003|consen 371 MEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDN 450 (840)
T ss_pred HHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccc
Confidence 21111 12222222222222222232110 0 0 011246788999998888876654321
Q ss_pred CCCCCHHHHHHH--HH----------------------------------HHHhcCChhHHHHHHHHHHhcCCCCCHHHH
Q 007194 229 PVDPDHITIGAL--MK----------------------------------ACANAGQVDRAREVYKMIHKYNIKGTPEVY 272 (613)
Q Consensus 229 ~~~~~~~~~~~l--l~----------------------------------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 272 (613)
.... ..-+.| +. .....|++++|.+.+++....+..-....|
T Consensus 451 k~~s--aaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealf 528 (840)
T KOG2003|consen 451 KTAS--AAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALF 528 (840)
T ss_pred hhhH--HHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHH
Confidence 1110 001111 00 011347788888888888776533222333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhc
Q 007194 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352 (613)
Q Consensus 273 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 352 (613)
| +.-.+-..|+.++|++.|-++...- .-+...+..+...|....+..+|++++.+.... ++.|+.+.+-|.+.|-+.
T Consensus 529 n-iglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqe 605 (840)
T KOG2003|consen 529 N-IGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQE 605 (840)
T ss_pred H-hcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcc
Confidence 3 3344667888999999887765431 125666777778888888889999888776554 577889999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-hhcCCHHHHHHH
Q 007194 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC-ERKDDVEVGLML 431 (613)
Q Consensus 353 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~~ 431 (613)
|+-.+|.+.+-.--+. ++-|..+..-|..-|.....+++|+..|++..- +.|+..-|..++..| .+.|++++|..+
T Consensus 606 gdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~ 682 (840)
T KOG2003|consen 606 GDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDL 682 (840)
T ss_pred cchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 9999998876544332 345677777788888888889999999998765 689999999888766 568999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHh
Q 007194 432 LSQAKEDGVIPNLVMFKCIIGMCSR 456 (613)
Q Consensus 432 ~~~~~~~g~~p~~~~~~~li~~~~~ 456 (613)
++...+. +..|......|+..++.
T Consensus 683 yk~~hrk-fpedldclkflvri~~d 706 (840)
T KOG2003|consen 683 YKDIHRK-FPEDLDCLKFLVRIAGD 706 (840)
T ss_pred HHHHHHh-CccchHHHHHHHHHhcc
Confidence 9988754 77788888888887764
No 28
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.68 E-value=2.4e-12 Score=132.72 Aligned_cols=426 Identities=13% Similarity=0.061 Sum_probs=263.1
Q ss_pred ccccccChhhhHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCC-----
Q 007194 18 HANYAHDVSEQLHSYNRLI---RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----- 89 (613)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~---~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----- 89 (613)
....|..+...+-..-.-. ....+..+++++...-..+ +.++.....+...+...|+...+..+...+..
T Consensus 226 lqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~ 303 (1018)
T KOG2002|consen 226 LQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENK 303 (1018)
T ss_pred HhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhh
Confidence 3455655655555554433 3467788999998888877 67888888888888777888888877665432
Q ss_pred -CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 007194 90 -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD--CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG 166 (613)
Q Consensus 90 -~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 166 (613)
--..+|--+.++|-..|++++|...|....+. .+| +..+--|...|.+.|+++.+...|+.+.... +.+..+..
T Consensus 304 ~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~ 380 (1018)
T KOG2002|consen 304 SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMK 380 (1018)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHH
Confidence 12346778899999999999999999888765 344 3445668899999999999999999998763 44566777
Q ss_pred HHHHHHHhcC----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh----hCCCCCCCCHHHHH
Q 007194 167 ALIDGCAKAG----QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN----AEVHPVDPDHITIG 238 (613)
Q Consensus 167 ~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~~~~~~ 238 (613)
.|...|+..+ ..+.|..++.+..+.- +.|...|..+...+-...-+ .++..|.... ..+ -.+.....|
T Consensus 381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~--~~ip~E~LN 456 (1018)
T KOG2002|consen 381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKG--KQIPPEVLN 456 (1018)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcC--CCCCHHHHH
Confidence 7777777764 4566666666665542 44566666665555443332 2244443322 221 224456777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhc---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--------
Q 007194 239 ALMKACANAGQVDRAREVYKMIHKY---NIKGTP------EVYTIAINCCSQTGDWEFACSVYDDMTKKGVI-------- 301 (613)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~~---~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-------- 301 (613)
.+...+...|+++.|...|+..... ...++. .+--.+...+-..++++.|.+.|..+.+..+.
T Consensus 457 Nvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl 536 (1018)
T KOG2002|consen 457 NVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRL 536 (1018)
T ss_pred hHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHh
Confidence 7777777788888888777766544 112222 12222333444445555555555555443211
Q ss_pred -------------------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCcCHHhHHHHHHHHHh----
Q 007194 302 -------------------------PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ-GISVGIISYSSLMGACSN---- 351 (613)
Q Consensus 302 -------------------------p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~---- 351 (613)
.+...++.+...+.....+..|.+-|....+. ...+|+.+.-+|.+.|..
T Consensus 537 ~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~ 616 (1018)
T KOG2002|consen 537 GCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHN 616 (1018)
T ss_pred hHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcc
Confidence 12222222333333333444444433333222 112455555555554432
Q ss_pred --------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC
Q 007194 352 --------AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423 (613)
Q Consensus 352 --------~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 423 (613)
.+..++|.++|.++.+.. +.|...-|.+...++..|++.+|..+|.+.++.. .-+..+|..+...|...|
T Consensus 617 ~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~ 694 (1018)
T KOG2002|consen 617 PSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQG 694 (1018)
T ss_pred cccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHH
Confidence 234667777777777654 4566666777777778888888888888877753 224456667777778888
Q ss_pred CHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHH
Q 007194 424 DVEVGLMLLSQAKE-DGVIPNLVMFKCIIGMC 454 (613)
Q Consensus 424 ~~~~a~~~~~~~~~-~g~~p~~~~~~~li~~~ 454 (613)
++-.|+++|+...+ ....-+..+.++|-.++
T Consensus 695 qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~ 726 (1018)
T KOG2002|consen 695 QYRLAIQMYENCLKKFYKKNRSEVLHYLARAW 726 (1018)
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 88888888877664 34444555566665553
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=1.2e-11 Score=116.23 Aligned_cols=324 Identities=21% Similarity=0.267 Sum_probs=237.9
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--cCChhHH-HHHHHHHHHCC----------
Q 007194 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK--SGKVDAM-FEVFHEMVNAG---------- 157 (613)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~--~g~~~~a-~~~~~~m~~~g---------- 157 (613)
.+++=|.|+.. ...|....+.-+++.|...|++.+...-..|+..-+- ..++.-| ++.|-.|...|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence 34556666654 4467889999999999999988777766666554332 2222111 12222222211
Q ss_pred ---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC
Q 007194 158 ---------IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228 (613)
Q Consensus 158 ---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 228 (613)
.+.+..++.+||.+.|+.-..+.|.+++++-.+...+.+..+||.+|.+-.-. ...+++.+|...
T Consensus 194 ~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisq-- 267 (625)
T KOG4422|consen 194 AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQ-- 267 (625)
T ss_pred cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHh--
Confidence 25577899999999999999999999999998887789999999999775533 236788888875
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHH----HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH----CC
Q 007194 229 PVDPDHITIGALMKACANAGQVDRA----REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF-ACSVYDDMTK----KG 299 (613)
Q Consensus 229 ~~~~~~~~~~~ll~~~~~~g~~~~A----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~~ 299 (613)
.+.||..|+|+++++.++.|+++.| .+++.+|++.|+.|+..+|..+|..+++.++..+ |..++.++.. +.
T Consensus 268 km~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~ 347 (625)
T KOG4422|consen 268 KMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKT 347 (625)
T ss_pred hcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCc
Confidence 6899999999999999999987654 5677889999999999999999999999888754 4555555443 22
Q ss_pred CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCcC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007194 300 VIP----DEVFLSALIDFAGHAGKVEAAFEILQEAKNQG----ISVG---IISYSSLMGACSNAKNWQKALELYEHMKSI 368 (613)
Q Consensus 300 ~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (613)
++| |...|...+..|.+..+.+.|.++..-+.... +.|+ ..-|..+....++....+.-...|+.|.-.
T Consensus 348 fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~ 427 (625)
T KOG4422|consen 348 FKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPS 427 (625)
T ss_pred ccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 332 56778888999999999999999988775431 2233 234667778888888899999999999866
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 007194 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421 (613)
Q Consensus 369 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 421 (613)
-+-|+..+...++++..-.|.++-.-+++.++...|..-+...-.-++..+++
T Consensus 428 ~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~ 480 (625)
T KOG4422|consen 428 AYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLAR 480 (625)
T ss_pred eecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhc
Confidence 66688888888889888889888888888888877644444433333333333
No 30
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=6.4e-10 Score=106.07 Aligned_cols=416 Identities=13% Similarity=0.102 Sum_probs=304.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChHHHHH
Q 007194 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQ 113 (613)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 113 (613)
.++++..|+.+|++.+.-+ ..+..+....+.+-.+++.+..|..++++.. +.-...|--.+-.--..|++..|.+
T Consensus 85 sq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHH
Confidence 5788899999999999876 4555566666777778889999999999754 3333456666666666799999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C
Q 007194 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-N 192 (613)
Q Consensus 114 l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g 192 (613)
+|++-.+. .|+...|++.|+.-.+...++.|..+|+...-. .|++.+|---...=.++|++..|..+|+...+. |
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 99988865 899999999999999999999999999998764 699999999999889999999999999988764 2
Q ss_pred C-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC--HHHHHHHHHHHHhcCChhHHHHH--------HHHHH
Q 007194 193 V-KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD--HITIGALMKACANAGQVDRAREV--------YKMIH 261 (613)
Q Consensus 193 ~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~A~~~--------~~~~~ 261 (613)
- .-+...|++...-=.++..++.|.-+|.-.... ++.+ ...|......--+.|+....... ++.+.
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~---~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v 315 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDH---IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEV 315 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHH
Confidence 1 112233444444444567788888888877753 3333 34454444444445654433332 33444
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH-----HH---HhcCCHHHHHHHHHHHH
Q 007194 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE--VFLSALID-----FA---GHAGKVEAAFEILQEAK 331 (613)
Q Consensus 262 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~-----~~---~~~g~~~~A~~~~~~~~ 331 (613)
+.+ +.|-.+|--.+..-...|+.+...++|++.... ++|-. ..|...|- +| ....+++.+.++++...
T Consensus 316 ~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l 393 (677)
T KOG1915|consen 316 SKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL 393 (677)
T ss_pred HhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444 566678888888888889999999999998875 44421 12222111 11 24678999999999988
Q ss_pred HCCCCcCHHhHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 007194 332 NQGISVGIISYSSLMGACS----NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (613)
Q Consensus 332 ~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 407 (613)
+. ++-...|+.-+--+|+ ++.++..|.+++.... |..|-..+|...|..-.+.++++....++++.++. .|
T Consensus 394 ~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~--~P 468 (677)
T KOG1915|consen 394 DL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF--SP 468 (677)
T ss_pred hh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--Ch
Confidence 84 4556667766655554 6788999999998765 45788899999999999999999999999999985 45
Q ss_pred -CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHh--hHHHHHHhhhhh
Q 007194 408 -NTITYSILLVACERKDDVEVGLMLLSQAKED-GVIPNLVMFKCIIGMCSR--RYEKARTLNEHV 468 (613)
Q Consensus 408 -~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-g~~p~~~~~~~li~~~~~--~~~~a~~~~~~~ 468 (613)
|..+|......-...|+.+.|+.+|+.++.. .++.....|.+.|+-=.. -+++|+.+.+.+
T Consensus 469 e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerl 533 (677)
T KOG1915|consen 469 ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERL 533 (677)
T ss_pred HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHH
Confidence 6788998888888999999999999998864 344456667777764221 466666665543
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.59 E-value=3.1e-11 Score=123.85 Aligned_cols=366 Identities=13% Similarity=0.141 Sum_probs=275.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHcCCC
Q 007194 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL---VPNPTLSTFNMLMSVCASSKD 107 (613)
Q Consensus 31 ~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~ 107 (613)
-.|.+--.|++++|..++.++.+++ |.+...+..++..+...|+.+++...+-. ..+.|...|-.+.....+.|+
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhccc
Confidence 4455667799999999999999998 77888888899999999999999887643 346677899999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhcCCHHHHHH
Q 007194 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTY----GALIDGCAKAGQVAKAFG 183 (613)
Q Consensus 108 ~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~----~~li~~~~~~g~~~~A~~ 183 (613)
++.|.-.|.+..+.. +++...+---...|-+.|+...|..-|.++.+..-+.|..-. -..++.|...++.+.|.+
T Consensus 223 i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 223 INQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999886 556555555678889999999999999999887422222222 234556667788899999
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhC-------------------------CCCCCCCHHHH
Q 007194 184 AYGIMRSK-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE-------------------------VHPVDPDHITI 237 (613)
Q Consensus 184 ~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------------------------~~~~~~~~~~~ 237 (613)
.++..... +-..+...++.++..+.+...++.|......+... +.+..++..++
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 99888763 12345567888888899998999888877766541 01122333331
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007194 238 GALMKACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (613)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 315 (613)
-++-++.+....+....+.....+.++ ..++..|.-+..+|.+.|++.+|+.+|..+......-+...|-.+..+|-
T Consensus 382 -rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 382 -RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred -hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 223344555556666666666666663 34567889999999999999999999999998766667888999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh--------CCCCCCHHHHHHHHHHHHcC
Q 007194 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS--------IKLKPTVSTMNALITALCDG 387 (613)
Q Consensus 316 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~~~~~~~~~li~~~~~~ 387 (613)
..|..++|.+.+..+.... +.+...-.+|-..+-+.|+.++|.+++..+.. .+..|+...--.....|.+.
T Consensus 461 ~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~ 539 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV 539 (895)
T ss_pred HHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence 9999999999999998875 55666777888889999999999999998652 22334444444455667778
Q ss_pred CChhHHHHHHHHHH
Q 007194 388 DQLPKTMEVLSDMK 401 (613)
Q Consensus 388 g~~~~A~~l~~~m~ 401 (613)
|+.++=+.....|.
T Consensus 540 gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 540 GKREEFINTASTLV 553 (895)
T ss_pred hhHHHHHHHHHHHH
Confidence 88777555554443
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.58 E-value=1.3e-14 Score=140.03 Aligned_cols=259 Identities=18% Similarity=0.168 Sum_probs=70.8
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007194 99 MSVCASSKDSEGAFQVLRLVQEAG-LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (613)
Q Consensus 99 i~~~~~~g~~~~A~~l~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 177 (613)
...+.+.|++++|++++....... .+.|...|..+...+...++.+.|.+.++++...+ +-+...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence 344455555556655554332222 12233333444444445555666666666555543 2234444445444 45555
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 007194 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257 (613)
Q Consensus 178 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 257 (613)
+++|.+++....+. .++...+...+..+.+.++++++.++++.+... ...+++...|..+...+.+.|+.++|.+.+
T Consensus 93 ~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 93 PEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEEL-PAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH--T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666555554433 234444555555555556666666655554432 123344555555555555666666666666
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 007194 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337 (613)
Q Consensus 258 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 337 (613)
++..+.. +.+....+.++..+...|+.+++.+++....+.. ..|...+..+..++...|+.++|+..++...+.. +.
T Consensus 170 ~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 170 RKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 6555553 3345555555555555566555555555544432 1233344555555555555555555555555543 34
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 007194 338 GIISYSSLMGACSNAKNWQKALELYEHM 365 (613)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (613)
|+.+...+.+++.+.|+.++|.++.++.
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp -HHHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 5555555555555555555555555443
No 33
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.4e-10 Score=110.38 Aligned_cols=256 Identities=10% Similarity=0.047 Sum_probs=131.9
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHccCC
Q 007194 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK--PDRVVFNALITACGQSGA 212 (613)
Q Consensus 135 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~ 212 (613)
.++-...+.+++.+-...+...|++-+...-+....+.-...+++.|+.+|+++.+.... -|..+|+.++-.--....
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 334444455555555555555555444444444444444555566666666666554210 134445444422111111
Q ss_pred HH-HHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007194 213 VD-RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291 (613)
Q Consensus 213 ~~-~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 291 (613)
+. -|..++. + ....|. |+..+.+-|+-.++.++|...|++..+.+ +....+|+.|..-|....+...|.+-
T Consensus 315 Ls~LA~~v~~-i----dKyR~E--TCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 315 LSYLAQNVSN-I----DKYRPE--TCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred HHHHHHHHHH-h----ccCCcc--ceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHH
Confidence 10 1111111 1 122332 44445555555566666666666666555 44455566666666666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 007194 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371 (613)
Q Consensus 292 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 371 (613)
++...+-.+. |-..|-.+.++|.-.+...-|+-.|++..... +.|...|.+|.++|.+.++.++|++-|.+....| .
T Consensus 387 YRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-d 463 (559)
T KOG1155|consen 387 YRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-D 463 (559)
T ss_pred HHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-c
Confidence 6666555433 55566666666666666666666666655543 4455666666666666666666666666655543 2
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 007194 372 PTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (613)
Q Consensus 372 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 401 (613)
.+...+..|...|-+.++..+|...|.+-.
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v 493 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYV 493 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 234555556666666666666665555543
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.56 E-value=1.1e-10 Score=119.77 Aligned_cols=360 Identities=14% Similarity=0.089 Sum_probs=268.6
Q ss_pred hhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 007194 72 KSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148 (613)
Q Consensus 72 ~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 148 (613)
...|++++|.+++.++. +.+...|.+|...|-+.|+.+++...+-..--.. +.|...|..+.....+.|.+++|.-
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHH
Confidence 34589999999998865 5677899999999999999999998765554443 5677899999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHccCCHHHHHHHHHHHh
Q 007194 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN----ALITACGQSGAVDRAFDVLAEMN 224 (613)
Q Consensus 149 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~----~li~~~~~~g~~~~A~~~~~~m~ 224 (613)
.|.+.++.. +++....---+..|-+.|+...|...|.++.....+.|..-+. ..+..+...++.+.|.+.++...
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999875 5565555566788999999999999999998874222222222 34556667777799999988877
Q ss_pred hCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC---------------------------CCCHHHHHHHHH
Q 007194 225 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI---------------------------KGTPEVYTIAIN 277 (613)
Q Consensus 225 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~---------------------------~~~~~~~~~li~ 277 (613)
.. .+-..+...++.++..|.+...++.|......+..+.. .++..+ -.++-
T Consensus 308 s~-~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~i 385 (895)
T KOG2076|consen 308 SK-EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMI 385 (895)
T ss_pred hh-ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhh
Confidence 63 22334555678888889999999999888776665222 222222 12233
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCH
Q 007194 278 CCSQTGDWEFACSVYDDMTKKGV--IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355 (613)
Q Consensus 278 ~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 355 (613)
++......+....+........+ .-+...|.-+..++...|++.+|+.+|..+.....--+..+|-.+..+|-..|..
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 34444444444445555555553 3355678888999999999999999999999886566788999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh--------CCCCCCHHHHHHHHHHHhhcCCHHH
Q 007194 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS--------LGLCPNTITYSILLVACERKDDVEV 427 (613)
Q Consensus 356 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--------~g~~p~~~t~~~ll~a~~~~g~~~~ 427 (613)
++|.+.|+...... +-+...--+|-..+-+.|+.++|++.+..+.. .+..|+..........+.+.|+.++
T Consensus 466 e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 466 EEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999998753 23455666778889999999999999998642 2345566666666677888888877
Q ss_pred HHHHHHHHH
Q 007194 428 GLMLLSQAK 436 (613)
Q Consensus 428 a~~~~~~~~ 436 (613)
=..+-..|+
T Consensus 545 fi~t~~~Lv 553 (895)
T KOG2076|consen 545 FINTASTLV 553 (895)
T ss_pred HHHHHHHHH
Confidence 555554444
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.56 E-value=2.7e-14 Score=137.81 Aligned_cols=257 Identities=18% Similarity=0.153 Sum_probs=94.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCC---CCHHHHHHHHHHHHcCCCh
Q 007194 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDS 108 (613)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 108 (613)
.+.+.+.|++++|++++++.......+.+..+...+..++...++.++|++.++++.. .++..+..++.. ...+++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 4555678888888888865443332255666666666677777788888888777652 234455555555 577778
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007194 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG-IEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (613)
Q Consensus 109 ~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (613)
++|.+++....+. .++...+..++..+.+.++++++.++++.+.... .+++...|..+...+.+.|+.++|++.+++
T Consensus 94 ~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 94 EEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred ccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8887777766544 3455566677777777788888888877766432 245666777777777788888888888887
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 007194 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267 (613)
Q Consensus 188 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 267 (613)
..+.. +-|....+.++..+...|+.+++.+++...... .+.|...+..+..+|...|+.++|..+|++..+.+ +.
T Consensus 172 al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~---~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 172 ALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKA---APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH----HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH---CcCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 77662 224666777777777778777777777666553 13444566677777777888888888887777654 56
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007194 268 TPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (613)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 296 (613)
|+.+...+...+.+.|+.++|.++..+..
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 67777777777888888888777776654
No 36
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.55 E-value=3.3e-11 Score=122.53 Aligned_cols=290 Identities=10% Similarity=-0.039 Sum_probs=173.3
Q ss_pred hhHHHHHHHHHHHhCC--CCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 007194 73 SQKAIKEAFRFFKLVP--NPT-LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149 (613)
Q Consensus 73 ~~~~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 149 (613)
..|+++.|.+.+.+.. .|+ ...+-....+..+.|+++.|.+.+....+....++..........+...|+++.|.+.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 3566777777766544 222 2233333455666777888887777776543122222333446666777788888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHH---HccCCHHHHHHHHHHHhh
Q 007194 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN-ALITAC---GQSGAVDRAFDVLAEMNA 225 (613)
Q Consensus 150 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~li~~~---~~~g~~~~A~~~~~~m~~ 225 (613)
++.+.+.. +.+..++..+...|.+.|+++.|.+.+..+.+.++.+ ...+. .-..++ ...+..+++.+.+..+..
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~-~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD-DEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 87777764 4456677777777788888888888887777765432 22221 111111 222222222334433333
Q ss_pred CCC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 007194 226 EVH-PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302 (613)
Q Consensus 226 ~~~-~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 302 (613)
... ..+.+...+..+...+...|+.+.|.+++++..+.. +++... ...........++.+.+.+.++...+....
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~- 331 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD- 331 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-
Confidence 210 011356667777777888888888888887777754 222211 111222223446677777777776665332
Q ss_pred CH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007194 303 DE--VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (613)
Q Consensus 303 ~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (613)
|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++..
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33 45567777778888888888888854433345777777788888888888888888887753
No 37
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.54 E-value=4.6e-11 Score=120.76 Aligned_cols=250 Identities=14% Similarity=0.060 Sum_probs=103.1
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH
Q 007194 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYG--ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215 (613)
Q Consensus 138 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 215 (613)
.+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|...++++.+.. +-+......+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 4555555555555555443 23322211 22344455555555555555554442 2234444445555555555555
Q ss_pred HHHHHHHHhhCCCCCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007194 216 AFDVLAEMNAEVHPVDPDH------ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (613)
Q Consensus 216 A~~~~~~m~~~~~~~~~~~------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 289 (613)
|.+++..+.+.. ...++. .+|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|.
T Consensus 206 a~~~l~~l~k~~-~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~ 283 (398)
T PRK10747 206 LLDILPSMAKAH-VGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQ 283 (398)
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHH
Confidence 555555554431 111110 01112222222222333333333333222 1233444444444444444444444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007194 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (613)
Q Consensus 290 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 369 (613)
+++++..+. .||... .++.+....++.+++.+..+...+.. +-|+.....+...|.+.|++++|.+.|+...+.
T Consensus 284 ~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~- 357 (398)
T PRK10747 284 QIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ- 357 (398)
T ss_pred HHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-
Confidence 444444442 122210 11112222344444444444444332 233334444444444444444444444444432
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 007194 370 LKPTVSTMNALITALCDGDQLPKTMEVLSD 399 (613)
Q Consensus 370 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 399 (613)
.|+...+..+...+.+.|+.++|.+++++
T Consensus 358 -~P~~~~~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 358 -RPDAYDYAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 24444444444444444444444444444
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.53 E-value=5.2e-11 Score=120.38 Aligned_cols=281 Identities=11% Similarity=0.023 Sum_probs=216.6
Q ss_pred hHHHHHHHHHHHhCCCC--CHHH-HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHcCChhHHHH
Q 007194 74 QKAIKEAFRFFKLVPNP--TLST-FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT--TLITTCAKSGKVDAMFE 148 (613)
Q Consensus 74 ~~~~~~A~~~~~~~~~~--~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~a~~ 148 (613)
.|+++.|.+.+...+.. ++.. |.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 47889999888876532 2333 333344458899999999999999875 55543332 34678889999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHccCCHHHHHHHHH
Q 007194 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR-------VVFNALITACGQSGAVDRAFDVLA 221 (613)
Q Consensus 149 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~ 221 (613)
.++++.+.. +.+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999998875 557788999999999999999999999999987644322 133344444444555666667777
Q ss_pred HHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007194 222 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301 (613)
Q Consensus 222 ~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (613)
.+... .+.+......+...+...|+.++|.+++++..+. ++++.. .++.+....++.+++++..+...+..+.
T Consensus 254 ~lp~~---~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 254 NQSRK---TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred hCCHH---HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 66542 3456778888999999999999999999988874 455432 2344445669999999999999887554
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007194 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (613)
Q Consensus 302 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (613)
|...+..+...|.+.+++++|.+.|+...+. .|+..++..+...+.+.|+.++|.+.+++-..
T Consensus 327 -~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 -TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6677888999999999999999999999886 58889999999999999999999999987654
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=9.8e-10 Score=104.69 Aligned_cols=331 Identities=13% Similarity=0.025 Sum_probs=240.0
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH--HHH
Q 007194 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH--TYG 166 (613)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~--~~~ 166 (613)
..|.+.+-.....+.+.|..+.|...|....-.- + ..|.+-+....-..+.+.+..+-. |.+.|.. .=-
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P---~~W~AWleL~~lit~~e~~~~l~~-----~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-P---WFWSAWLELSELITDIEILSILVV-----GLPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-C---cchHHHHHHHHhhchHHHHHHHHh-----cCcccchHHHHH
Confidence 3455545555555666777777777777666321 2 233333333222233333222211 1122211 111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHh
Q 007194 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246 (613)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~ 246 (613)
-+..+|-...+.+++++-.+.....|++-+...-+....+.-...++++|+.+|+++.+..+---.|..+|+.++ |.+
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~ 309 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHH
Confidence 234556666788899988888888887766666666666677789999999999999876322223567787776 444
Q ss_pred cCChhHHHHHH-HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007194 247 AGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325 (613)
Q Consensus 247 ~g~~~~A~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 325 (613)
..+-.- ..+ +...+.+ +--+.|...+.+.|+-.++.++|...|++.++.+.. ....|+.+..-|....+...|.+
T Consensus 310 ~~~skL--s~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 310 NDKSKL--SYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hhhHHH--HHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHH
Confidence 432221 111 1111111 233478888999999999999999999999998665 56778899999999999999999
Q ss_pred HHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCC
Q 007194 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405 (613)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 405 (613)
-++...+-+ +.|...|-.|..+|.-.+...-|.-.|++..+.. +.|...|.+|..+|.+.++.++|++.|......|
T Consensus 386 sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~- 462 (559)
T KOG1155|consen 386 SYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG- 462 (559)
T ss_pred HHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-
Confidence 999999886 7789999999999999999999999999998864 4578999999999999999999999999998865
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007194 406 CPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 406 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (613)
..+...+..|...+-+.++.++|.+.+++-++
T Consensus 463 dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 463 DTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44678899999999999999999999988765
No 40
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.52 E-value=3.6e-09 Score=104.94 Aligned_cols=395 Identities=12% Similarity=0.062 Sum_probs=286.3
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 007194 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA--DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (613)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 168 (613)
+...|-.=...|-..|..-.+..+.......|+.. --.||+.-.+.|.+.+.++-|..+|...++.- +.+...|...
T Consensus 478 ~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra 556 (913)
T KOG0495|consen 478 NRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRA 556 (913)
T ss_pred cHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHH
Confidence 33344444444555555555555555555555433 24689999999999999999999999988763 5567788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcC
Q 007194 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248 (613)
Q Consensus 169 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g 248 (613)
...--..|..+....+|++.... ++.....|-.....+-..|++..|..++.+..+.. +.+...|.+-+..-....
T Consensus 557 ~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~---pnseeiwlaavKle~en~ 632 (913)
T KOG0495|consen 557 AMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN---PNSEEIWLAAVKLEFEND 632 (913)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC---CCcHHHHHHHHHHhhccc
Confidence 87777889999999999999876 34456667667777888899999999999887642 335677888888899999
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007194 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328 (613)
Q Consensus 249 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 328 (613)
+++.|..+|.+.... .|+..+|.--+..---.+..++|.+++++.++.- +.-...|..+.+.+-+.++++.|...|.
T Consensus 633 e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~ 709 (913)
T KOG0495|consen 633 ELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYL 709 (913)
T ss_pred cHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 999999999988764 5677788777777777899999999999988762 2234567788888999999999999887
Q ss_pred HHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 007194 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (613)
Q Consensus 329 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 408 (613)
.-.+. ++-.+..|-.|...--+.|.+-.|+.+|++..-.+ +.|...|-..|..-.+.|..+.|..+..+.++. ++-+
T Consensus 710 ~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~s 786 (913)
T KOG0495|consen 710 QGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSS 786 (913)
T ss_pred hcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCcc
Confidence 76554 35567788888888889999999999999987665 567889999999999999999999999887765 5556
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-H-hhHHHHHHhhhhhhcccCCCCccchhhhHHH
Q 007194 409 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC-S-RRYEKARTLNEHVLSFNSGRPQIENKWTSLA 486 (613)
Q Consensus 409 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~-~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a 486 (613)
...|.--|....+.++-......+ .+. +-|..+.-++-.++ + +++++|..+++.....++ .++..|.-
T Consensus 787 g~LWaEaI~le~~~~rkTks~DAL---kkc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~---d~GD~wa~-- 856 (913)
T KOG0495|consen 787 GLLWAEAIWLEPRPQRKTKSIDAL---KKC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP---DNGDAWAW-- 856 (913)
T ss_pred chhHHHHHHhccCcccchHHHHHH---Hhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC---ccchHHHH--
Confidence 678888887777777644444333 332 33333333333333 2 378899988775544333 33445522
Q ss_pred HHHHHHHHHcCCCCcHHHHHHH
Q 007194 487 LMVYREAIVAGTIPTVEVVSKV 508 (613)
Q Consensus 487 ~~~~~~m~~~g~~p~~~~~~~~ 508 (613)
+|.--.+.|..-|..-+..-
T Consensus 857 --fykfel~hG~eed~kev~~~ 876 (913)
T KOG0495|consen 857 --FYKFELRHGTEEDQKEVLKK 876 (913)
T ss_pred --HHHHHHHhCCHHHHHHHHHH
Confidence 23333455666665544433
No 41
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.52 E-value=2.6e-10 Score=103.69 Aligned_cols=221 Identities=16% Similarity=0.169 Sum_probs=135.6
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCH
Q 007194 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV------HTYGALIDGCAKAGQV 178 (613)
Q Consensus 105 ~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~------~~~~~li~~~~~~g~~ 178 (613)
+++.++|.++|-+|.+.. +.+..+.-+|.+.|-+.|.++.|+.+++.+.++ ||. ...-.|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 357888888888888743 445556677888888888888888888887763 442 2334455667777778
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC----HHHHHHHHHHHHhcCChhHHH
Q 007194 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALMKACANAGQVDRAR 254 (613)
Q Consensus 179 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~ 254 (613)
+.|..+|..+.+.| .--......|+..|-...++++|..+-+++...+ -.+. ...|.-|...+....+++.|.
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~--~q~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLG--GQTYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC--CccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 88888887777643 2234456667777777777777777776665421 1111 112333444444455666666
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007194 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (613)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 333 (613)
.++.+..+.+ +..+.+--.+.+.+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.+++...+..+.+.
T Consensus 201 ~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 201 ELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 6666666554 22333333445556666666666666666666544333344555566666666666666666665554
No 42
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.50 E-value=1.7e-08 Score=100.25 Aligned_cols=416 Identities=13% Similarity=0.096 Sum_probs=331.5
Q ss_pred ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHH---hCCCCCHHHHHHHHH
Q 007194 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK---LVPNPTLSTFNMLMS 100 (613)
Q Consensus 24 ~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~---~~~~~~~~~~~~li~ 100 (613)
.++.++..|..-+.....+.|+-++++..+-- |....+... +.+..-++.|.++++ +..+.+...|.+...
T Consensus 375 ~iP~sv~LWKaAVelE~~~darilL~rAvecc--p~s~dLwlA----larLetYenAkkvLNkaRe~iptd~~IWitaa~ 448 (913)
T KOG0495|consen 375 HIPRSVRLWKAAVELEEPEDARILLERAVECC--PQSMDLWLA----LARLETYENAKKVLNKAREIIPTDREIWITAAK 448 (913)
T ss_pred hCCchHHHHHHHHhccChHHHHHHHHHHHHhc--cchHHHHHH----HHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHH
Confidence 34567788988888888888999999988764 444443333 333444666666665 455778899988888
Q ss_pred HHHcCCChHHHHHHHHH----HHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHh
Q 007194 101 VCASSKDSEGAFQVLRL----VQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP--NVHTYGALIDGCAK 174 (613)
Q Consensus 101 ~~~~~g~~~~A~~l~~~----m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~ 174 (613)
.--.+|+.+....+..+ +...|+.-+...|..=...|-..|.+-.+..+....+..|++- -..||+.-...|.+
T Consensus 449 LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k 528 (913)
T KOG0495|consen 449 LEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEK 528 (913)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHh
Confidence 88889999988888765 4467888899999988999999999999999999988887653 34689999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 007194 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254 (613)
Q Consensus 175 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 254 (613)
.+.++-|..+|....+- .+.+...|......--..|..+....+|++.... ++-....|......+-..|++..|.
T Consensus 529 ~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~---~pkae~lwlM~ake~w~agdv~~ar 604 (913)
T KOG0495|consen 529 RPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ---CPKAEILWLMYAKEKWKAGDVPAAR 604 (913)
T ss_pred cchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHhcCCcHHHH
Confidence 99999999999988875 3556677877777777779999999999998864 3445566777778888899999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007194 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (613)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 334 (613)
.++..+.+.. +.+...|-+-+..-..+..++.|..+|.+.... .|+...|.--+..---.+..++|.+++++..+.
T Consensus 605 ~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~- 680 (913)
T KOG0495|consen 605 VILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS- 680 (913)
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-
Confidence 9999998886 568899999999999999999999999998775 455666665555556678999999999988876
Q ss_pred CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 007194 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414 (613)
Q Consensus 335 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 414 (613)
++.-...|-.+...+-+.++++.|.+.|..-.+. ++..+..|-.|...--+.|..-.|..++++.+-.+ +-|...|..
T Consensus 681 fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle 758 (913)
T KOG0495|consen 681 FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLE 758 (913)
T ss_pred CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHH
Confidence 3444667888889999999999999988765543 23446788888888889999999999999987753 347788999
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007194 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456 (613)
Q Consensus 415 ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~ 456 (613)
.+..-.+.|+.+.|..+..++++. +..+...|..-|.+..+
T Consensus 759 ~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~ 799 (913)
T KOG0495|consen 759 SIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPR 799 (913)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccC
Confidence 999999999999999999988864 55666677777766443
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.50 E-value=1.5e-10 Score=117.66 Aligned_cols=286 Identities=12% Similarity=-0.007 Sum_probs=142.6
Q ss_pred cCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHH
Q 007194 104 SSKDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV--HTYGALIDGCAKAGQVAK 180 (613)
Q Consensus 104 ~~g~~~~A~~l~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~ 180 (613)
..|+++.|.+.+....+. .|+ ...+-....++.+.|+.+.|.+.+.+..+. .|+. ...-.....+...|+++.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHH
Confidence 457777777777666554 233 333344455666667777777777776544 2333 233334666666777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHH-HHHHH---HhcCChhHHHHH
Q 007194 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA-LMKAC---ANAGQVDRAREV 256 (613)
Q Consensus 181 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~-ll~~~---~~~g~~~~A~~~ 256 (613)
|...++.+.+.. +-+...+..+...+...|++++|.+++..+.+.+ . ++...+.. -..++ ...+..+.+.+.
T Consensus 172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~--~-~~~~~~~~l~~~a~~~~l~~~~~~~~~~~ 247 (409)
T TIGR00540 172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG--L-FDDEEFADLEQKAEIGLLDEAMADEGIDG 247 (409)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC--C-CCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 777777776663 3345566666677777777777777777766531 1 12221211 01111 111222222223
Q ss_pred HHHHHhcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHH
Q 007194 257 YKMIHKYN---IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF--AGHAGKVEAAFEILQEAK 331 (613)
Q Consensus 257 ~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~~~ 331 (613)
+..+.+.. .+.++..+..+...+...|+.++|.+++++..+....+....+. ++.. ....++.+.+.+.++...
T Consensus 248 L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~l 326 (409)
T TIGR00540 248 LLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQA 326 (409)
T ss_pred HHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH-HHHHhhhcCCCChHHHHHHHHHHH
Confidence 33332221 11355666666666666666666666666666653321111000 1111 122344445555554444
Q ss_pred HCCCCcCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 007194 332 NQGISVGI--ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399 (613)
Q Consensus 332 ~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 399 (613)
+.. +-|+ ....++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++
T Consensus 327 k~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 327 KNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 432 2233 344455555555555555555555322222235554455555555555555555555554
No 44
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=1.8e-10 Score=109.04 Aligned_cols=421 Identities=16% Similarity=0.192 Sum_probs=272.2
Q ss_pred hcCCHHHHHHHHHHHHHc-----------CCC-----CchHHHHHHHHHHHhhhHHHHHHHHHHHhCCC----CCHHHH-
Q 007194 37 RQGRISECIDLLEDMERK-----------GLL-----DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTF- 95 (613)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~-----------~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~- 95 (613)
.+|++.+|++--.+.-++ |.+ ..+..+...+.+-+.......+|+..|+-+.. ||.-..
T Consensus 161 ~~~~~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lk 240 (840)
T KOG2003|consen 161 ECGDFKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILK 240 (840)
T ss_pred hhhhHHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceee
Confidence 578888887654433221 211 11222333444555556667888888876542 222211
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007194 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKAD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (613)
Q Consensus 96 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 171 (613)
-.+...+.+...+.+|+..++.....-...+ ....+.+.-.+.+.|+++.|+.-|+...+. .||..+--.|+-+
T Consensus 241 mnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~ 318 (840)
T KOG2003|consen 241 MNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIIC 318 (840)
T ss_pred eeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhh
Confidence 2244567788889999999988776521112 233455555677899999999999998776 6888877777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC------------CCCHHHHHHHHH-----HHHccCC--HHHHHHHHHHHhhCCCCCCC
Q 007194 172 CAKAGQVAKAFGAYGIMRSKNV------------KPDRVVFNALIT-----ACGQSGA--VDRAFDVLAEMNAEVHPVDP 232 (613)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~g~------------~p~~~~~~~li~-----~~~~~g~--~~~A~~~~~~m~~~~~~~~~ 232 (613)
+..-|+.++..+.|.+|..-.. .|+....+.-|. -.-+... -+++.-.-..+.. .-+.|
T Consensus 319 ~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiia--pvi~~ 396 (840)
T KOG2003|consen 319 AFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIA--PVIAP 396 (840)
T ss_pred heecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhc--ccccc
Confidence 7788999999999999976422 233333333221 1111111 1222211122221 11223
Q ss_pred CHHH-------------HH--------HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH-------------
Q 007194 233 DHIT-------------IG--------ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC------------- 278 (613)
Q Consensus 233 ~~~~-------------~~--------~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~------------- 278 (613)
|-.. +. .-..-|.+.|+++.|.++++-..+.+-..-...-+.|-..
T Consensus 397 ~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aq 476 (840)
T KOG2003|consen 397 DFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQ 476 (840)
T ss_pred chhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHH
Confidence 2110 00 1123478999999999999887665432211111111100
Q ss_pred -----------------------HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007194 279 -----------------------CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335 (613)
Q Consensus 279 -----------------------~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 335 (613)
-..+|++++|.+.+++.+..+..-....|+.= -.+...|++++|++.|-.+..- +
T Consensus 477 qyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnig-lt~e~~~~ldeald~f~klh~i-l 554 (840)
T KOG2003|consen 477 QYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIG-LTAEALGNLDEALDCFLKLHAI-L 554 (840)
T ss_pred HHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhc-ccHHHhcCHHHHHHHHHHHHHH-H
Confidence 11347889999999998876433222233322 2456789999999998876543 2
Q ss_pred CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 007194 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415 (613)
Q Consensus 336 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 415 (613)
..+..+...+...|....+..+|++++.+.... ++.|+....-|...|-+.|+-.+|.+..-+--+- ++-|..|...|
T Consensus 555 ~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl 632 (840)
T KOG2003|consen 555 LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWL 632 (840)
T ss_pred HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHH
Confidence 346778888899999999999999999877654 3556888889999999999999999887654432 45577888888
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---hHHHHHHhhhh
Q 007194 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR---RYEKARTLNEH 467 (613)
Q Consensus 416 l~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~---~~~~a~~~~~~ 467 (613)
..-|....-+++++.+|++..- +.|+..-|..+|..|.| +|.+|.++.+.
T Consensus 633 ~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~ 685 (840)
T KOG2003|consen 633 AAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKD 685 (840)
T ss_pred HHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 8888888999999999998765 78999999999988877 67777666554
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=3.4e-11 Score=119.82 Aligned_cols=283 Identities=14% Similarity=0.087 Sum_probs=203.4
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHccCCHHHHHHH
Q 007194 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN--VKPDRVVFNALITACGQSGAVDRAFDV 219 (613)
Q Consensus 142 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~ 219 (613)
+..+|...|.++...- .-+..+...+..+|...+++++|.++|+.+.+.. .--+...|.+.+.-+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 4577888888855542 3344566677888888888888888888887651 112455677766544322 12222
Q ss_pred HH-HHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007194 220 LA-EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 220 ~~-~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 298 (613)
+. .+... -+..+.+|.++.++|+-.++.+.|++.|++..+.+ +....+|+.+..-+.....+|.|...|+..+..
T Consensus 409 Laq~Li~~---~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 409 LAQDLIDT---DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHhh---CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 22 22221 12335688888888888888888888888888876 446788888888888888888888888887765
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007194 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378 (613)
Q Consensus 299 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 378 (613)
... +-..|--+...|.+.++++.|.-.|+...+-+ +.+.+....+...+-+.|+.++|+.++++....+ +.|+.+--
T Consensus 485 ~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~ 561 (638)
T KOG1126|consen 485 DPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKY 561 (638)
T ss_pred Cch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHH
Confidence 332 33455666778888888888888888888776 5567777788888888888889998888887665 34555555
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 007194 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 438 (613)
Q Consensus 379 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (613)
-.+..+...+++++|+..++++++ +.|+ ...|..+...|.+.|+.+.|+.-|.-+.+.
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 566677778888899998888887 4565 455777778888888888888888877764
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=3.6e-11 Score=119.69 Aligned_cols=263 Identities=12% Similarity=0.034 Sum_probs=156.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 007194 177 QVAKAFGAYGIMRSKNVKPDR-VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255 (613)
Q Consensus 177 ~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 255 (613)
+..+|...|...... .+|+ .....+..+|...+++++|.++|+.+.+...-...+...|++.+--+-+ +-++.
T Consensus 334 ~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred HHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence 356777777775443 2333 3344556777777777777777777765432222345566666543321 11222
Q ss_pred HH-HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007194 256 VY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (613)
Q Consensus 256 ~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 334 (613)
.+ +.+.+.+ +..+.+|-++.++|.-.++.+.|++.|++..+.+.. ...+|+.+..-+.....+|.|...|+......
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 22 2333333 455677777777777777777777777777665432 55666666666667777777777777665442
Q ss_pred CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-CHHHHH
Q 007194 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYS 413 (613)
Q Consensus 335 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~ 413 (613)
+-+...|.-|.-.|.|.++++.|.-.|+...+.+ +.+.+....+...+-+.|+.++|+++++++... .| |...--
T Consensus 486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--d~kn~l~~~ 561 (638)
T KOG1126|consen 486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL--DPKNPLCKY 561 (638)
T ss_pred -chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--CCCCchhHH
Confidence 2223344455666777777777777777777654 345566666666777777777777777777653 33 333333
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHH
Q 007194 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM-FKCIIGM 453 (613)
Q Consensus 414 ~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~-~~~li~~ 453 (613)
.-...+...+++++|.+.++++.+ +.|+..+ +..+...
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki 600 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKI 600 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHH
Confidence 334455566777777777777776 4454433 3333334
No 47
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.45 E-value=3.9e-10 Score=102.59 Aligned_cols=271 Identities=17% Similarity=0.168 Sum_probs=178.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC--HHHHHHHHHHHHhcCChhH
Q 007194 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD--HITIGALMKACANAGQVDR 252 (613)
Q Consensus 175 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~ 252 (613)
+.+.++|.++|-+|.+.. +-+..+--+|-+.|.+.|.+|.|++++..+... .+..-+ ......|..-|...|-++.
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 456777777777776541 122223345666777777777777777776652 111111 1233445666777888888
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHH
Q 007194 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE----VFLSALIDFAGHAGKVEAAFEILQ 328 (613)
Q Consensus 253 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~ 328 (613)
|+.+|..+.+.+ ..-..+...|+..|-+..+|++|+++-+++.+.+..+.. ..|.-+...+....+++.|...+.
T Consensus 126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 888888777654 333456777888888888888888888888777655433 234455555555677888888888
Q ss_pred HHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 007194 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (613)
Q Consensus 329 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 408 (613)
+..+.+ +.++..--.+.+.+...|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++....+..+.+.. +.
T Consensus 205 kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g 281 (389)
T COG2956 205 KALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TG 281 (389)
T ss_pred HHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CC
Confidence 887765 444555556777788888888888888888876533334567778888888899988888888877743 33
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007194 409 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453 (613)
Q Consensus 409 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 453 (613)
...-..+...-....-.+.|...+.+-++ -.|+...+..||+.
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~ 324 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDY 324 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHh
Confidence 33333333333344445566655554444 36888888888875
No 48
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=3.9e-08 Score=94.19 Aligned_cols=408 Identities=10% Similarity=0.064 Sum_probs=295.8
Q ss_pred hHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC--CCCHHHHHHHHHH
Q 007194 28 QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMSV 101 (613)
Q Consensus 28 ~~~~~~~l~----~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~ 101 (613)
+...|-.++ ++.++..|+.++++....- |....+..-.+..--..|++.-|.++|++-. .|+...|++.|+.
T Consensus 106 ~itLWlkYae~Emknk~vNhARNv~dRAvt~l--PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~f 183 (677)
T KOG1915|consen 106 NITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKF 183 (677)
T ss_pred cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 444454444 8999999999999988754 5444444444444456788999999998743 8999999999999
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-CC-CCCHHHHHHHHHHHHhcCCHH
Q 007194 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA-GI-EPNVHTYGALIDGCAKAGQVA 179 (613)
Q Consensus 102 ~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~-~~~~~~~~~li~~~~~~g~~~ 179 (613)
-.+-+..+.|..++++.+-. .|++.+|......--++|.+..+.++|....+. |- .-+...+.+....=.++..++
T Consensus 184 ElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~E 261 (677)
T KOG1915|consen 184 ELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYE 261 (677)
T ss_pred HHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998854 799999999999999999999999999987653 10 112334455555555678899
Q ss_pred HHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCCH---HHHHH-----HHHHHhhCCCCCCCCHHHHHHHHHHHHhcCC
Q 007194 180 KAFGAYGIMRSKNVKPD--RVVFNALITACGQSGAV---DRAFD-----VLAEMNAEVHPVDPDHITIGALMKACANAGQ 249 (613)
Q Consensus 180 ~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~---~~A~~-----~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~ 249 (613)
.|.-+|.-.+.. ++.+ ...|......=-+-|+. +++.- -++.+... -+-|-.+|--.+..-...|+
T Consensus 262 Rar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~---np~nYDsWfdylrL~e~~g~ 337 (677)
T KOG1915|consen 262 RARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK---NPYNYDSWFDYLRLEESVGD 337 (677)
T ss_pred HHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh---CCCCchHHHHHHHHHHhcCC
Confidence 999999888765 2222 23343333333333543 33322 13444443 24566688888888888899
Q ss_pred hhHHHHHHHHHHhcCCCCCH--HHHHHHHH--------HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----
Q 007194 250 VDRAREVYKMIHKYNIKGTP--EVYTIAIN--------CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG---- 315 (613)
Q Consensus 250 ~~~A~~~~~~~~~~~~~~~~--~~~~~li~--------~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~---- 315 (613)
.+...++|++.... ++|-. ..|...|- .=....+.+.+.++|+..++. ++...+||.-+--.|+
T Consensus 338 ~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feI 415 (677)
T KOG1915|consen 338 KDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEI 415 (677)
T ss_pred HHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHH
Confidence 99999999998875 35521 12222221 113467889999999999884 3335667766655554
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 007194 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395 (613)
Q Consensus 316 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 395 (613)
++.++..|.+++...+ |..|-..++...|..-.+.++++.+..+++...+.+ +-|..+|.-....-...|+.+.|..
T Consensus 416 Rq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRa 492 (677)
T KOG1915|consen 416 RQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARA 492 (677)
T ss_pred HHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHH
Confidence 5688999999998876 557888999999999999999999999999999876 4567889888888888999999999
Q ss_pred HHHHHHhCC-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007194 396 VLSDMKSLG-LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450 (613)
Q Consensus 396 l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l 450 (613)
+|.-...+. +.-....|.+.|+--...|.++.|+.+++++++. .+...+|-++
T Consensus 493 ifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisF 546 (677)
T KOG1915|consen 493 IFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISF 546 (677)
T ss_pred HHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhH
Confidence 999988742 1123455677777778899999999999999874 3333344443
No 49
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.41 E-value=2.7e-09 Score=100.26 Aligned_cols=285 Identities=16% Similarity=0.124 Sum_probs=161.0
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007194 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184 (613)
Q Consensus 105 ~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 184 (613)
.|++..|+.+..+-.+++ +-....|..-..+.-..|+.+.+-..+.+.-+.--.++....-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 567777777777766665 2334455555666667777777777777766552244555566666666777777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-------HHHHHHHHHHHHhcCChhHHHHHH
Q 007194 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-------HITIGALMKACANAGQVDRAREVY 257 (613)
Q Consensus 185 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-------~~~~~~ll~~~~~~g~~~~A~~~~ 257 (613)
.+++.+.+ +.++........+|.+.|++.....++..+.+.+ .-.| ..+|..+++-....+..+.-...+
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~--~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG--LLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc--CCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 77766654 4455666667777777777777777777776542 2222 123444444444444444444444
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 007194 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337 (613)
Q Consensus 258 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 337 (613)
+..... ...++..-.+++.-+.+.|+.++|.++..+..+.+..|. ...+ -.+.+.++...-.+..+.-.+.. +.
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~-~~~l~~~d~~~l~k~~e~~l~~h-~~ 326 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL-IPRLRPGDPEPLIKAAEKWLKQH-PE 326 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH-HhhcCCCCchHHHHHHHHHHHhC-CC
Confidence 444333 233445555566666666666666666666666555443 1111 12334444444444444433331 33
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 007194 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (613)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 401 (613)
++-.+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+.++|.+.|+..+|.+.+++..
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 3455555666666666666666666644443 4566666666666666666666666555543
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.38 E-value=7.3e-09 Score=97.42 Aligned_cols=286 Identities=12% Similarity=0.043 Sum_probs=212.6
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 007194 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219 (613)
Q Consensus 140 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 219 (613)
.|++.+|+++..+-.+.+ +.....|..-..+--+.|+.+.+-+++.+.-+.--.++....-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 588999999988877776 3334556666777778899999999998887763345566666777788888999999888
Q ss_pred HHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHH
Q 007194 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP-------EVYTIAINCCSQTGDWEFACSVY 292 (613)
Q Consensus 220 ~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~ 292 (613)
++++.... +.+..+......+|.+.|++.....++..+.+.+.-.+. .+|+.+++-....+..+.-...+
T Consensus 176 v~~ll~~~---pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 176 VDQLLEMT---PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHhC---cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 88877642 445667778889999999999999999999888865553 35666776666666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 007194 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372 (613)
Q Consensus 293 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 372 (613)
++.... .+-+...-.+++.-+.++|+.++|.++..+..+++..|+ .. ..-.+.+.++.+.-.+..+.-.... +-
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~-~~~~~l~~~d~~~l~k~~e~~l~~h-~~ 326 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LC-RLIPRLRPGDPEPLIKAAEKWLKQH-PE 326 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HH-HHHhhcCCCCchHHHHHHHHHHHhC-CC
Confidence 666543 233556667778888889999999999988888876655 22 2224556677666666665544321 23
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007194 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 373 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (613)
++..+.+|...|.+++.+.+|.+.|+...+ ..|+..+|..+..++.+.|+..+|.+..++..-
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 447788888899999999999999997776 578999999999999999999999988887663
No 51
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=1.1e-08 Score=98.37 Aligned_cols=377 Identities=11% Similarity=0.074 Sum_probs=238.2
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCC--C-CHHHHHHHHHHHHcCCChHHH
Q 007194 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--P-TLSTFNMLMSVCASSKDSEGA 111 (613)
Q Consensus 35 l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A 111 (613)
+-++|++++|++.+.+.+... |...+++......+...|++++..+.--+..+ | -+..++--.+++-+.|++++|
T Consensus 125 ~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~ea 202 (606)
T KOG0547|consen 125 FFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEA 202 (606)
T ss_pred hhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHH
Confidence 447899999999999999886 66577777788888888999988877655443 2 234555555667777777776
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHH--------HHHHH-CC--CCCCHHHHHHHHHHHHh------
Q 007194 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF--------HEMVN-AG--IEPNVHTYGALIDGCAK------ 174 (613)
Q Consensus 112 ~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~--------~~m~~-~g--~~~~~~~~~~li~~~~~------ 174 (613)
+.=.. ..+++..+....-...+.+++ .+-.+ .+ +-|+.....+....+..
T Consensus 203 l~D~t-------------v~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~ 269 (606)
T KOG0547|consen 203 LFDVT-------------VLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLF 269 (606)
T ss_pred HHhhh-------------HHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccc
Confidence 54222 112222222111111122222 11111 11 22333333332222211
Q ss_pred -------------------cC---CHHHHHHHHHHHHhC-CCCC--C---------HHHHHHHHHHHHccCCHHHHHHHH
Q 007194 175 -------------------AG---QVAKAFGAYGIMRSK-NVKP--D---------RVVFNALITACGQSGAVDRAFDVL 220 (613)
Q Consensus 175 -------------------~g---~~~~A~~~~~~m~~~-g~~p--~---------~~~~~~li~~~~~~g~~~~A~~~~ 220 (613)
.+ .+..|.+.+.+-... -..+ + ..+.......+.-.|+...|..-|
T Consensus 270 ~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~ 349 (606)
T KOG0547|consen 270 DNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDF 349 (606)
T ss_pred cCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhH
Confidence 01 122222222211100 0011 1 111111112233457788888888
Q ss_pred HHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007194 221 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300 (613)
Q Consensus 221 ~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 300 (613)
+..+... +.+...|--+..+|....+.++..+.|++..+.+ +.++.+|..-...+.-.+++++|..=|++.....+
T Consensus 350 ~~~I~l~---~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~p 425 (606)
T KOG0547|consen 350 DAAIKLD---PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDP 425 (606)
T ss_pred HHHHhcC---cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcCh
Confidence 8887642 2222236667778899999999999999998887 66778888888888888999999999999887654
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-------
Q 007194 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT------- 373 (613)
Q Consensus 301 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~------- 373 (613)
. +...|--+--+..+.++++++...|++.++. ++..+.+|+.....+...++++.|.+.|+...+. .|+
T Consensus 426 e-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~ 501 (606)
T KOG0547|consen 426 E-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVN 501 (606)
T ss_pred h-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--cccccccccc
Confidence 3 4555655555566788899999999998876 5777889999999999999999999999988764 232
Q ss_pred HHHH--HHHHHHHHcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007194 374 VSTM--NALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 374 ~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (613)
...+ -+++-.- -.+++..|++++++..+ +.| ....|.+|...-.+.|+.++|+++|++...
T Consensus 502 ~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 502 AAPLVHKALLVLQ-WKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred chhhhhhhHhhhc-hhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1111 1121111 23788899999999887 455 457788888888999999999999987654
No 52
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=2.4e-09 Score=104.76 Aligned_cols=371 Identities=11% Similarity=0.047 Sum_probs=260.0
Q ss_pred HHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHcCChhH
Q 007194 70 VCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG----LKADCKLYTTLITTCAKSGKVDA 145 (613)
Q Consensus 70 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~~~~~~~~~li~~~~~~g~~~~ 145 (613)
++.....+++|...|.+....|+..+..+...-.. ..-.+.+.++.+.... ...++.....+.....-...-+.
T Consensus 150 ~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~ 227 (611)
T KOG1173|consen 150 VYVALDNREEARDKYKEALLADAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEE 227 (611)
T ss_pred hhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcccc
Confidence 34445567788888877766666666554433221 1112222222222111 11222222222222211111111
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 007194 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (613)
Q Consensus 146 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (613)
....-.+..-.+...+........+-+...+++.+..++++...+.. ++....+..-|.++...|+..+-..+=.++.+
T Consensus 228 ~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~ 306 (611)
T KOG1173|consen 228 SLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVD 306 (611)
T ss_pred ccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 11111111112334566666667777888999999999999998874 66667777777889999998888877777776
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC
Q 007194 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK--GVIPD 303 (613)
Q Consensus 226 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~ 303 (613)
. .+....+|-++.--|.-.|+..+|++.|.+....+ +.-...|-.+...|.-.|..+.|+..+...-+. |..
T Consensus 307 ~---yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-- 380 (611)
T KOG1173|consen 307 L---YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-- 380 (611)
T ss_pred h---CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc--
Confidence 3 35567889999988999999999999999887765 333568999999999999999999998876653 221
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-C-CCHHHH
Q 007194 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI----KL-K-PTVSTM 377 (613)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~-~~~~~~ 377 (613)
.-+--+.--|.+.+..+.|.++|.+..... |.|+.+.+-+.-...+.+.+.+|...|+..... +- . .-..++
T Consensus 381 -lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~ 458 (611)
T KOG1173|consen 381 -LPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTL 458 (611)
T ss_pred -chHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHH
Confidence 112233445778899999999999988764 778899999988888999999999999987631 10 1 134568
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007194 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (613)
Q Consensus 378 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 454 (613)
+.|..+|.+.+.+++|+..+++.+.. .+-|..|++++.-.+...|+++.|...|.+.+- +.|+..+-..++..+
T Consensus 459 ~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 459 NNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 88999999999999999999998875 244889999999999999999999999998875 789988877777653
No 53
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.35 E-value=9.6e-07 Score=88.04 Aligned_cols=409 Identities=14% Similarity=0.129 Sum_probs=261.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHH
Q 007194 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAF 112 (613)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 112 (613)
..++++|++..-+..|+..++.-.+..+..+....+++..+.+-.+-+.++|++-..-++..-+-.|..+++.+++++|.
T Consensus 110 q~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa 189 (835)
T KOG2047|consen 110 QFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAA 189 (835)
T ss_pred HHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHH
Confidence 34558999999999999988876555666677778888888888889999998876666666788888999999999999
Q ss_pred HHHHHHHHc------CCCCCHHHHHHHHHHHHHcCChhH---HHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHH
Q 007194 113 QVLRLVQEA------GLKADCKLYTTLITTCAKSGKVDA---MFEVFHEMVNAGIEPN--VHTYGALIDGCAKAGQVAKA 181 (613)
Q Consensus 113 ~l~~~m~~~------g~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A 181 (613)
+.+...... ..+.+...|.-+-+..++.-+.-. ...++..+... -+| ...|++|.+-|.+.|.+++|
T Consensus 190 ~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~eka 267 (835)
T KOG2047|consen 190 QRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKA 267 (835)
T ss_pred HHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHH
Confidence 988877532 124556677777777666544332 23334444332 344 35799999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCC----------------------HHHHHHHHHHHhhCCCCC---------
Q 007194 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGA----------------------VDRAFDVLAEMNAEVHPV--------- 230 (613)
Q Consensus 182 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----------------------~~~A~~~~~~m~~~~~~~--------- 230 (613)
.++|++.... .....-|..+.++|+.-.. ++-.+.-|+.+.... ++
T Consensus 268 rDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr-~~~lNsVlLRQ 344 (835)
T KOG2047|consen 268 RDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR-PLLLNSVLLRQ 344 (835)
T ss_pred HHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc-chHHHHHHHhc
Confidence 9999998765 2344455556665553211 222233333333210 11
Q ss_pred -CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 007194 231 -DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG------TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303 (613)
Q Consensus 231 -~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 303 (613)
+.++..|..-+. ...|+..+-...+.+..+. +.| -...|..+...|-.+|+.+.|..+|++..+...+--
T Consensus 345 n~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v 421 (835)
T KOG2047|consen 345 NPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTV 421 (835)
T ss_pred CCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccch
Confidence 111222222221 2235566666777766553 122 135688999999999999999999999887654321
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----------CCc------CHHhHHHHHHHHHhcCCHHHHHHHHH
Q 007194 304 ---EVFLSALIDFAGHAGKVEAAFEILQEAKNQG-----------ISV------GIISYSSLMGACSNAKNWQKALELYE 363 (613)
Q Consensus 304 ---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----------~~~------~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (613)
..+|..-...=.+..+++.|+++.+...... .++ +..+|...++.--..|-++....+++
T Consensus 422 ~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYd 501 (835)
T KOG2047|consen 422 EDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYD 501 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 1233333344445677888888887764321 111 23345566666677888999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHh---hcCCHHHHHHHHHHHHHcC
Q 007194 364 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSILLVACE---RKDDVEVGLMLLSQAKEDG 439 (613)
Q Consensus 364 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~---~~g~~~~a~~~~~~~~~~g 439 (613)
++.+..+-......| ....+-.+.-++++.+.+++-+..=-.|+. ..|++.|.-+. ....++.|+.+|++.++ |
T Consensus 502 riidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~ 579 (835)
T KOG2047|consen 502 RIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-G 579 (835)
T ss_pred HHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-c
Confidence 998765432222222 223345666788999988875543224554 35666664443 24468999999999998 6
Q ss_pred CCCCHHHHHHHH
Q 007194 440 VIPNLVMFKCII 451 (613)
Q Consensus 440 ~~p~~~~~~~li 451 (613)
+.|...-+-.|+
T Consensus 580 Cpp~~aKtiyLl 591 (835)
T KOG2047|consen 580 CPPEHAKTIYLL 591 (835)
T ss_pred CCHHHHHHHHHH
Confidence 666554443333
No 54
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.34 E-value=6.2e-10 Score=113.90 Aligned_cols=251 Identities=16% Similarity=0.135 Sum_probs=140.4
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 007194 115 LRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194 (613)
Q Consensus 115 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 194 (613)
+..+...|+.|+.+||..+|.-||..|+.+.|- +|.-|.-...+.+...++.++.+..+.++.+.+. .
T Consensus 13 la~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------e 80 (1088)
T KOG4318|consen 13 LALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------E 80 (1088)
T ss_pred HHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------C
Confidence 334444455555555555555555555555444 4444444444444444555555444444444333 3
Q ss_pred CCHHHHHHHHHHHHccCCHHH-----------------------HHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChh
Q 007194 195 PDRVVFNALITACGQSGAVDR-----------------------AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251 (613)
Q Consensus 195 p~~~~~~~li~~~~~~g~~~~-----------------------A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 251 (613)
|...||..|..+|...|++.. -..++..+.- ..+.-||..+ .+......|.++
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c-~p~~lpda~n---~illlv~eglwa 156 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHC-CPHSLPDAEN---AILLLVLEGLWA 156 (1088)
T ss_pred CchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhccc-CcccchhHHH---HHHHHHHHHHHH
Confidence 444455555555555544322 2222211111 1122333322 333344455666
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007194 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (613)
Q Consensus 252 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 331 (613)
.+.+++..++...-.. +... ++.-+..... ...++........-.|+..+|..++..-...|+.+.|..++.+|.
T Consensus 157 qllkll~~~Pvsa~~~-p~~v--fLrqnv~~nt--pvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNA-PFQV--FLRQNVVDNT--PVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HHHHHHhhCCcccccc-hHHH--HHHHhccCCc--hHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 6666665554332111 1111 2333322222 222333332221115788889999998888999999999999999
Q ss_pred HCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 007194 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389 (613)
Q Consensus 332 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 389 (613)
+.|++.+..-|..|+-+ .++..-+..+.+.|.+.|+.|+..|+...+..+.++|.
T Consensus 232 e~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 232 EKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 99988888888888765 77888888888889999999999998888777777655
No 55
>PF13041 PPR_2: PPR repeat family
Probab=99.33 E-value=4.1e-12 Score=86.01 Aligned_cols=50 Identities=30% Similarity=0.639 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 007194 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421 (613)
Q Consensus 372 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 421 (613)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777777777777777777777777777777777777777777777764
No 56
>PRK12370 invasion protein regulator; Provisional
Probab=99.32 E-value=2.1e-09 Score=113.68 Aligned_cols=248 Identities=12% Similarity=0.006 Sum_probs=176.1
Q ss_pred hHHHHHHHHHHHhCC---CCCHHHHHHHHHHHH---------cCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 007194 74 QKAIKEAFRFFKLVP---NPTLSTFNMLMSVCA---------SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141 (613)
Q Consensus 74 ~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~---------~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g 141 (613)
.+++++|..+|++.. +.+...|..+...+. ..+++++|...+++..+.+ +.+...+..+...+...|
T Consensus 274 ~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 456788999998754 334555655554433 2345789999999999875 557888888888899999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCCHHHHHHHH
Q 007194 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD-RVVFNALITACGQSGAVDRAFDVL 220 (613)
Q Consensus 142 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~ 220 (613)
++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. |+ ...+..++..+...|++++|...+
T Consensus 353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 9999999999998875 4457788889999999999999999999998874 43 223334455566788999999999
Q ss_pred HHHhhCCCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 007194 221 AEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK- 298 (613)
Q Consensus 221 ~~m~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 298 (613)
.+..... +| +...+..+..++...|+.++|...+.++.... +.+....+.+...|...| +.|...++.+.+.
T Consensus 430 ~~~l~~~---~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~ 503 (553)
T PRK12370 430 DELRSQH---LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESE 503 (553)
T ss_pred HHHHHhc---cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHh
Confidence 9887531 24 34456677788889999999999998876553 344556677777778777 4777777776552
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007194 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (613)
Q Consensus 299 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 334 (613)
...|....+..+ .+.-.|+-+.+... +++.+.+
T Consensus 504 ~~~~~~~~~~~~--~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 504 QRIDNNPGLLPL--VLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hHhhcCchHHHH--HHHHHhhhHHHHHH-HHhhccc
Confidence 122222233333 34445666655555 7777664
No 57
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.30 E-value=3.2e-09 Score=99.50 Aligned_cols=196 Identities=16% Similarity=0.107 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007194 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (613)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 208 (613)
.+..+...+...|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 34444444444455555554444444332 2233344444444444555555555554444332 222333444444444
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007194 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (613)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 288 (613)
..|++++|.+.+.+..... ..+.....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|
T Consensus 111 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDP-LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HcccHHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 4455555555444443310 011112233333444444444444444444444432 22333444444444444444444
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007194 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329 (613)
Q Consensus 289 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 329 (613)
...+++..+. ...+...+..+...+...|+.++|..+.+.
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4444444433 111233333333344444444444444333
No 58
>PF13041 PPR_2: PPR repeat family
Probab=99.29 E-value=8.8e-12 Score=84.36 Aligned_cols=50 Identities=36% Similarity=0.658 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 007194 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (613)
Q Consensus 160 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 209 (613)
||..+||++|++|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666666666666666666666666666666666666666666666653
No 59
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.28 E-value=4.8e-09 Score=98.35 Aligned_cols=199 Identities=14% Similarity=0.058 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007194 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (613)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 314 (613)
..+..+...|...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHH
Confidence 344555555666666666666666655543 334555566666666666666666666666554332 344455555566
Q ss_pred HhcCCHHHHHHHHHHHHHCCC-CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHH
Q 007194 315 GHAGKVEAAFEILQEAKNQGI-SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393 (613)
Q Consensus 315 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 393 (613)
...|++++|...+....+... +.....+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666654321 2233445556666677777777777777666543 23355666666777777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007194 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 394 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (613)
...+++..+. .+.+...+..+...+...|+.++|..+.+.+.+
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 7777776654 233455555566666677777777776665543
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=99.28 E-value=8e-09 Score=109.27 Aligned_cols=232 Identities=11% Similarity=0.062 Sum_probs=144.6
Q ss_pred CHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHH---------hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 007194 212 AVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACA---------NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281 (613)
Q Consensus 212 ~~~~A~~~~~~m~~~~~~~~~~-~~~~~~ll~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 281 (613)
..++|...|++..+. .|+ ...+..+..+|. ..+++++|...+++..+.+ +.+..++..+...+..
T Consensus 276 ~~~~A~~~~~~Al~l----dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~ 350 (553)
T PRK12370 276 SLQQALKLLTQCVNM----SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTI 350 (553)
T ss_pred HHHHHHHHHHHHHhc----CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 356777778777653 343 344444444433 2234677888888877776 5567777777777778
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHH
Q 007194 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361 (613)
Q Consensus 282 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 361 (613)
.|++++|...|++..+.++. +...+..+...+...|++++|...+++..+.+. .+...+..++..+...|++++|...
T Consensus 351 ~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P-~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 351 HSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDP-TRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred ccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHhccCHHHHHHH
Confidence 88888888888887776533 455666777777788888888888888777642 2233333344455667778888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHH-HHHHHHhhcCCHHHHHHHHHHHHH-cC
Q 007194 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS-ILLVACERKDDVEVGLMLLSQAKE-DG 439 (613)
Q Consensus 362 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~~~~-~g 439 (613)
+++..+...+.+...+..+...|...|+.++|...+.++... .|+..+.. .+...+...| +.+...++.+.+ ..
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~ 504 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQ 504 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhh
Confidence 877765431223445666777777888888888888776543 45544433 3334455555 466666666553 22
Q ss_pred CCCCHHHHHHHHHHH
Q 007194 440 VIPNLVMFKCIIGMC 454 (613)
Q Consensus 440 ~~p~~~~~~~li~~~ 454 (613)
-.|.......++.++
T Consensus 505 ~~~~~~~~~~~~~~~ 519 (553)
T PRK12370 505 RIDNNPGLLPLVLVA 519 (553)
T ss_pred HhhcCchHHHHHHHH
Confidence 333333334444444
No 61
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.27 E-value=2.6e-10 Score=116.54 Aligned_cols=253 Identities=17% Similarity=0.174 Sum_probs=180.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 007194 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227 (613)
Q Consensus 148 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 227 (613)
.++..+...|+.|+.+||..+|.-||..|+.+.|- +|.-|.....+.+...|+.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45677888999999999999999999999999998 9999988887888999999999998888876543
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhH---HHHHHHHHH----hcCCCCCHHHHH---------------HHHHHHHhcCCH
Q 007194 228 HPVDPDHITIGALMKACANAGQVDR---AREVYKMIH----KYNIKGTPEVYT---------------IAINCCSQTGDW 285 (613)
Q Consensus 228 ~~~~~~~~~~~~ll~~~~~~g~~~~---A~~~~~~~~----~~~~~~~~~~~~---------------~li~~~~~~g~~ 285 (613)
.|...+|+.|..+|...||+.. ..+.+..+. ..|+. ....|- ..+......|.+
T Consensus 80 ---ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvg-s~e~~fl~k~~c~p~~lpda~n~illlv~eglw 155 (1088)
T KOG4318|consen 80 ---EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVG-SPERWFLMKIHCCPHSLPDAENAILLLVLEGLW 155 (1088)
T ss_pred ---CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccC-cHHHHHHhhcccCcccchhHHHHHHHHHHHHHH
Confidence 4677799999999999999765 222111111 11211 111111 122233334555
Q ss_pred HHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 007194 286 EFACSVYDDMTKKGV-IPDEVFLSALIDFAGHAGK-VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363 (613)
Q Consensus 286 ~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (613)
+.+++++..+....- .|..+ +++-+..... +++-..+.+.... .|++.+|..+++.-...|+++.|..++.
T Consensus 156 aqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~ 228 (1088)
T KOG4318|consen 156 AQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLY 228 (1088)
T ss_pred HHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHH
Confidence 555555555443211 11111 2333333222 2222222222222 5899999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCH
Q 007194 364 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425 (613)
Q Consensus 364 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 425 (613)
+|.+.|++-+..-|..|+-+ .+...-+..+++.|.+.|+.|+..|+...+..|..+|..
T Consensus 229 emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t 287 (1088)
T KOG4318|consen 229 EMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQT 287 (1088)
T ss_pred HHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhh
Confidence 99999999898888888877 778888889999999999999999999888777775543
No 62
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=3.3e-08 Score=96.92 Aligned_cols=287 Identities=14% Similarity=0.059 Sum_probs=218.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007194 122 GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201 (613)
Q Consensus 122 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 201 (613)
+...+......-.+-+...+++.+..++++.+.+.. +++...+..-|.++...|+..+-..+=.++.+. .+-...+|-
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~ 316 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWF 316 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchh
Confidence 345566666677777788899999999999988765 666777777778888888887777777777765 245577898
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 007194 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281 (613)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 281 (613)
++.--|...|+..+|.+.|.+...-...+ ...|......|+-.|..++|...+....+.= +...--+--+.--|.+
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD~~f---gpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~ 392 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLDPTF---GPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMR 392 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcCccc---cHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHH
Confidence 88888888899999999998876432222 3467788888999999999998887665531 1111122233445778
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C--CCcCHHhHHHHHHHHHhcCCH
Q 007194 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ----G--ISVGIISYSSLMGACSNAKNW 355 (613)
Q Consensus 282 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~--~~~~~~~~~~li~~~~~~g~~ 355 (613)
.++++.|.+.|.+.....+. |+...+-+.-.....+.+.+|...|+..... + ..--..+++.|..+|.+++.+
T Consensus 393 t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred hccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 89999999999988765432 6666776666666678899999999887622 1 011245689999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007194 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418 (613)
Q Consensus 356 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 418 (613)
++|+..|++..... +.+..++.++.-.|...|+++.|.+.|.+.+. +.||..+.+.++..
T Consensus 472 ~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 472 EEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKL 531 (611)
T ss_pred HHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHH
Confidence 99999999988764 67889999999999999999999999999876 78999888888763
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.22 E-value=5.5e-09 Score=95.22 Aligned_cols=229 Identities=15% Similarity=0.009 Sum_probs=121.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 007194 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280 (613)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 280 (613)
+.+.++|.+.|.+.+|.+.|+.-... .|-+.||..|-+.|.+..+++.|+.++.+-.+. ++.++....-+...+-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q----~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ----FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc----CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHH
Confidence 34555566666666666555554433 334445555555666666666666666555443 2333333344455555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHH
Q 007194 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360 (613)
Q Consensus 281 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 360 (613)
..++.++|.++++...+.... ++.....+...|.-.++++.|+.+++++.+.|+ .++..|+.+.-+|.-.+.++-+..
T Consensus 302 am~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHH
Confidence 555666666666655554322 444444444555555566666666666665553 345555555555555566666655
Q ss_pred HHHHHHhCCCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007194 361 LYEHMKSIKLKPT--VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 361 ~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (613)
-|++....--.|+ ...|-.+-......|++.-|.+.|+-....+ .-+...++.|.-.-.+.|++++|+.++.....
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 5555544322233 2345555555555566666666666555432 12334555555555566666666666655543
No 64
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=5.5e-06 Score=82.18 Aligned_cols=415 Identities=15% Similarity=0.133 Sum_probs=237.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHH--HHHHHH--cCC
Q 007194 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNM--LMSVCA--SSK 106 (613)
Q Consensus 31 ~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--li~~~~--~~g 106 (613)
..|...++|.+++|.+...++...+ |.+......-.-...+.+.+++|+++.+.-.... +++. +=.+|+ +.+
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhhHHHHHHHHHcc
Confidence 3455668999999999999999876 5555444333444567788999997766544211 1222 234444 678
Q ss_pred ChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 007194 107 DSEGAFQVLRLVQEAGLKA-DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP-NVHTYGALIDGCAKAGQVAKAFGA 184 (613)
Q Consensus 107 ~~~~A~~l~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~ 184 (613)
..++|+..++ |..+ |..+...-...+.+.|++++|..+|+.+.+.+.+- +...-..++..- .+...
T Consensus 94 k~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~-------a~l~~ 161 (652)
T KOG2376|consen 94 KLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA-------AALQV 161 (652)
T ss_pred cHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-------HhhhH
Confidence 8999998887 3333 34466666777889999999999999997664221 111111111111 01111
Q ss_pred HHHHHhCCCCCCHHHHHHHH---HHHHccCCHHHHHHHHHHHhh--------CCCC---CCCCHH-HHHHHHHHHHhcCC
Q 007194 185 YGIMRSKNVKPDRVVFNALI---TACGQSGAVDRAFDVLAEMNA--------EVHP---VDPDHI-TIGALMKACANAGQ 249 (613)
Q Consensus 185 ~~~m~~~g~~p~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~--------~~~~---~~~~~~-~~~~ll~~~~~~g~ 249 (613)
..+......| ..+|..+. -.+...|++.+|++++..... ...+ +..+.. .-..|.-.+-..|+
T Consensus 162 -~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 162 -QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred -HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 0122222222 22343333 234456777777777766511 1000 000000 11223345566777
Q ss_pred hhHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHh--------------------------------------------
Q 007194 250 VDRAREVYKMIHKYNIKGTPE----VYTIAINCCSQ-------------------------------------------- 281 (613)
Q Consensus 250 ~~~A~~~~~~~~~~~~~~~~~----~~~~li~~~~~-------------------------------------------- 281 (613)
.++|..++..+.+.+. +|.. .-|.|+..-..
T Consensus 240 t~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l 318 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL 318 (652)
T ss_pred hHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777766652 2221 11222111100
Q ss_pred -cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHH
Q 007194 282 -TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA--GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358 (613)
Q Consensus 282 -~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 358 (613)
.+..+.+.++-... .+-.|. ..+.+++..+.+. ....++..++...-+....-...+.-..+......|+++.|
T Consensus 319 ~tnk~~q~r~~~a~l--p~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 319 FTNKMDQVRELSASL--PGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred HhhhHHHHHHHHHhC--CccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH
Confidence 01111111111111 112233 3344454443322 24566777777666554223355667777888899999999
Q ss_pred HHHHH--------HHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC--CCCCCHHHHHHHH----HHHhhcCC
Q 007194 359 LELYE--------HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL--GLCPNTITYSILL----VACERKDD 424 (613)
Q Consensus 359 ~~~~~--------~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll----~a~~~~g~ 424 (613)
.+++. .+.+.+..|-. ..++...|.+.++.+.|..++.+.... .-.+......+++ ..-.+.|+
T Consensus 396 ~~il~~~~~~~~ss~~~~~~~P~~--V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~ 473 (652)
T KOG2376|consen 396 LEILSLFLESWKSSILEAKHLPGT--VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGN 473 (652)
T ss_pred HHHHHHHhhhhhhhhhhhccChhH--HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCc
Confidence 99999 66665555544 456677788888877788887776541 1122223333333 33356799
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-hHHHHHHhhhhhhc
Q 007194 425 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR-RYEKARTLNEHVLS 470 (613)
Q Consensus 425 ~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~-~~~~a~~~~~~~~~ 470 (613)
-++|...++++.+. ..+|..+...++.+|++ ..++|..+...+..
T Consensus 474 ~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~d~eka~~l~k~L~p 519 (652)
T KOG2376|consen 474 EEEASSLLEELVKF-NPNDTDLLVQLVTAYARLDPEKAESLSKKLPP 519 (652)
T ss_pred hHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhcCHHHHHHHhhcCCC
Confidence 99999999999985 35788899999999998 78888888776543
No 65
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.18 E-value=2e-07 Score=95.45 Aligned_cols=290 Identities=14% Similarity=0.138 Sum_probs=165.2
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHc-----
Q 007194 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA-LITACGQ----- 209 (613)
Q Consensus 136 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-li~~~~~----- 209 (613)
.+...|++++|++.++.-... +.............+.+.|+.++|..+|..+.+.+ |+...|-. +..+..-
T Consensus 13 il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence 344556666666666553332 12223344455556666666666666666666653 34333333 3333311
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007194 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV-DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (613)
Q Consensus 210 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 288 (613)
..+.+...++++++... -|.......+.-.+..-..+ ..+...+..+..+|+| .+|+.+-..|....+.+-.
T Consensus 90 ~~~~~~~~~~y~~l~~~----yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEK----YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccHHHHHHHHHHHHHh----CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence 12345556666665543 12222221111111111112 2334445556666654 4666666666655555555
Q ss_pred HHHHHHHHHC----C----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhc
Q 007194 289 CSVYDDMTKK----G----------VIPDEV--FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352 (613)
Q Consensus 289 ~~~~~~m~~~----~----------~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 352 (613)
.+++...... + -.|... ++..+...|...|++++|+++.+..+.+. +..+..|..-...|-+.
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHC
Confidence 5555554321 1 123332 34555666777888888888888888775 33466777788888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHH------H--HHHHHHHhhcCC
Q 007194 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT------Y--SILLVACERKDD 424 (613)
Q Consensus 353 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t------~--~~ll~a~~~~g~ 424 (613)
|++.+|.+.++.....+ .-|...-+-.+..+.++|+.++|.+++....+.+..|-... | .-...+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888888888887765 34555556667777788888888888887776654442211 1 233467888888
Q ss_pred HHHHHHHHHHHHH
Q 007194 425 VEVGLMLLSQAKE 437 (613)
Q Consensus 425 ~~~a~~~~~~~~~ 437 (613)
+..|++-|..+.+
T Consensus 321 ~~~ALk~~~~v~k 333 (517)
T PF12569_consen 321 YGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHH
Confidence 8888776665543
No 66
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=5.3e-07 Score=87.05 Aligned_cols=320 Identities=12% Similarity=0.069 Sum_probs=174.6
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 007194 97 MLMSVCASSKDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN-VHTYGALIDGCAK 174 (613)
Q Consensus 97 ~li~~~~~~g~~~~A~~l~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~ 174 (613)
...+-|.++|++++|++.+.+.++. .|| ++.|.....+|...|++++..+.-.+.++. .|+ +..+..-.+++-.
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQ 195 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHh
Confidence 3445577778888888888888765 566 677777778888888888877777666654 343 3344555556666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHH--------HHHHHHHhh-CCCCCCCCHHHHHHHHHHHH
Q 007194 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA--------FDVLAEMNA-EVHPVDPDHITIGALMKACA 245 (613)
Q Consensus 175 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A--------~~~~~~m~~-~~~~~~~~~~~~~~ll~~~~ 245 (613)
.|++++|+.-.. -..++.++....-..-+ ++...+-.. ...++-|+.....+....+-
T Consensus 196 lg~~~eal~D~t-------------v~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~ 262 (606)
T KOG0547|consen 196 LGKFDEALFDVT-------------VLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFH 262 (606)
T ss_pred hccHHHHHHhhh-------------HHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcc
Confidence 666666543221 11122222111111111 111111111 11223333322222222111
Q ss_pred h-------------------------cC---ChhHHHHHHHHHHhc---CCCCC---------HHHHHHHHHHHHhcCCH
Q 007194 246 N-------------------------AG---QVDRAREVYKMIHKY---NIKGT---------PEVYTIAINCCSQTGDW 285 (613)
Q Consensus 246 ~-------------------------~g---~~~~A~~~~~~~~~~---~~~~~---------~~~~~~li~~~~~~g~~ 285 (613)
. .+ .+..|...+.+-... ....+ ..+...-...+.-.|+.
T Consensus 263 ~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~ 342 (606)
T KOG0547|consen 263 ADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDS 342 (606)
T ss_pred ccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCc
Confidence 0 00 112222222111000 00000 11112222233345666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 007194 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365 (613)
Q Consensus 286 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (613)
-.|..-|+........++. .|--+...|....+..+....|....+.+ +-++.+|..-..++.-.+++++|..=|++.
T Consensus 343 ~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Ka 420 (606)
T KOG0547|consen 343 LGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKA 420 (606)
T ss_pred hhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777766554333 25555556777777777777777777665 456666776667777777777777777777
Q ss_pred HhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007194 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 366 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (613)
.+.. +-+...|--+..+..+.+++++++..|++.++. ++--+..|+.....+..+++++.|.+.|+..++
T Consensus 421 i~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 421 ISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred hhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 6643 234556666666666777777777777777664 444456677777777777777777777777765
No 67
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.17 E-value=3.6e-06 Score=84.36 Aligned_cols=385 Identities=14% Similarity=0.133 Sum_probs=239.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChHHHHH
Q 007194 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQ 113 (613)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 113 (613)
..+++...+.+.+.+.+.. |.+....+..+-.....|+-++|........ ..+.+.|..+.-.+....++++|+.
T Consensus 19 E~kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHH
Confidence 5678888888888888754 5554444444444455677888888776654 4566788888888888889999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-
Q 007194 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN- 192 (613)
Q Consensus 114 l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g- 192 (613)
.|+.....+ +.|...+.-+--.-++.|+++-.......+.+.. +.....|..+..++.-.|+...|..+.++..+..
T Consensus 97 cy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999988775 5567777777777778888888777777776653 3456678888888888999999999988887654
Q ss_pred CCCCHHHHHHHH------HHHHccCCHHHHHHHHHHHhhCCCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 007194 193 VKPDRVVFNALI------TACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT-IGALMKACANAGQVDRAREVYKMIHKYNI 265 (613)
Q Consensus 193 ~~p~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 265 (613)
-.|+...+.-.. ......|..++|.+.+...... ..|... -.+-...+.+.+++++|..++..+..++
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~----i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn- 249 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ----IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN- 249 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH----HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-
Confidence 246655554322 2345667778887777654321 223222 2344567788889999999998888874
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHH-HHH----------------------------------HHHHHCCCCCCHHHHHHH
Q 007194 266 KGTPEVYTIAINCCSQTGDWEFAC-SVY----------------------------------DDMTKKGVIPDEVFLSAL 310 (613)
Q Consensus 266 ~~~~~~~~~li~~~~~~g~~~~A~-~~~----------------------------------~~m~~~~~~p~~~~~~~l 310 (613)
+.+..-|-.+..++.+-.+.-++. .+| ..+.+.|+++ ++..+
T Consensus 250 Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl 326 (700)
T KOG1156|consen 250 PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDL 326 (700)
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhh
Confidence 333333333444443222222222 333 3333444432 22222
Q ss_pred HHHHHhcCCHHHHHHHHHHHH--------HCC----------CCcCHHh--HHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 007194 311 IDFAGHAGKVEAAFEILQEAK--------NQG----------ISVGIIS--YSSLMGACSNAKNWQKALELYEHMKSIKL 370 (613)
Q Consensus 311 i~~~~~~g~~~~A~~~~~~~~--------~~~----------~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 370 (613)
...|-.....+ +++++. ..| -+|.... +-.++..|-+.|+++.|....+....+
T Consensus 327 ~SLyk~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH-- 400 (700)
T KOG1156|consen 327 RSLYKDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH-- 400 (700)
T ss_pred HHHHhchhHhH----HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--
Confidence 22222111111 222211 010 1344333 334566677788888888888777654
Q ss_pred CCCH-HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCC
Q 007194 371 KPTV-STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440 (613)
Q Consensus 371 ~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~ 440 (613)
.|+. ..|..=.+.+...|..++|...+++..+.. .||...-+--..-..++.+.++|..+.....+.|.
T Consensus 401 TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 401 TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 4553 345555567777888888888888777643 34554444445555667778888888877777664
No 68
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=4.5e-06 Score=79.09 Aligned_cols=397 Identities=12% Similarity=0.045 Sum_probs=184.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC------------------CCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCC
Q 007194 29 LHSYNRLIRQGRISECIDLLEDMERKGL------------------LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP 90 (613)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~l~~~m~~~~~------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 90 (613)
++.++.+-+...+..|.+-|....+... .+.+.......+..+...++-++|.....++|+.
T Consensus 47 ~yl~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t 126 (564)
T KOG1174|consen 47 LYLLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPT 126 (564)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCcc
Confidence 3444555577788888888877765421 1122223333444455556677788877777743
Q ss_pred -CHHHHHHHHHHHHcCC-ChHHHHHHHHHHH--------------HcC---------------CCCCHHHHHHHHHHHHH
Q 007194 91 -TLSTFNMLMSVCASSK-DSEGAFQVLRLVQ--------------EAG---------------LKADCKLYTTLITTCAK 139 (613)
Q Consensus 91 -~~~~~~~li~~~~~~g-~~~~A~~l~~~m~--------------~~g---------------~~~~~~~~~~li~~~~~ 139 (613)
...--|.|+.-+-+.| +-.++.--+.... +.+ ++|...+...-+.+++.
T Consensus 127 ~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq 206 (564)
T KOG1174|consen 127 LRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQ 206 (564)
T ss_pred ccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHH
Confidence 3333444444443332 2112221122211 111 11111122222333222
Q ss_pred --cCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHccCCHHH
Q 007194 140 --SGKVDAMFEVFHEMVNA-GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF-NALITACGQSGAVDR 215 (613)
Q Consensus 140 --~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~ 215 (613)
.++...+.+.+-.+... -++-|+.....+...+...|+.++|...|++.... .|+..+- ..-.-.+.+.|+.+.
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhh
Confidence 22223333333222221 13345555556666666666666666666655543 2222211 111112334455555
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007194 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295 (613)
Q Consensus 216 A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 295 (613)
...+...+.... .-....|-.-+......++++.|+.+-++..+.+ +.+...+-.-...+...+++++|.-.|+..
T Consensus 285 ~~~L~~~Lf~~~---~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~A 360 (564)
T KOG1174|consen 285 DSALMDYLFAKV---KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTA 360 (564)
T ss_pred HHHHHHHHHhhh---hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHH
Confidence 555544443311 0111112122222333445555555555555544 333344444445555566666666666655
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHH-HHHH-hcCCHHHHHHHHHHHHhCCCCCC
Q 007194 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACS-NAKNWQKALELYEHMKSIKLKPT 373 (613)
Q Consensus 296 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~g~~~~A~~~~~~m~~~~~~~~ 373 (613)
+...+. +..+|..|+..|...|++.+|.-+-+...+. ++.+..+.+.+. ..+. ...--++|.++++.-... .|+
T Consensus 361 q~Lap~-rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~ 436 (564)
T KOG1174|consen 361 QMLAPY-RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPI 436 (564)
T ss_pred Hhcchh-hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCc
Confidence 544221 4556666666666666666665555444332 123333333331 1221 111234555555554432 344
Q ss_pred -HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007194 374 -VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 374 -~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (613)
....+.+...+...|..++++.+++.... ..||....+.|.+.+.....+++|...|.....
T Consensus 437 Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 437 YTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred cHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 33445555555666666666666666554 256666666666666666666666666655554
No 69
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.14 E-value=1.8e-07 Score=95.80 Aligned_cols=286 Identities=14% Similarity=0.118 Sum_probs=166.4
Q ss_pred hhHHHHHHHHHHHhCC--CCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-----CChh
Q 007194 73 SQKAIKEAFRFFKLVP--NPT-LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS-----GKVD 144 (613)
Q Consensus 73 ~~~~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~-----g~~~ 144 (613)
..|++++|+++++... -.| ..........+.+.|+.++|..++..+.+.+ +.+..-|..+..+..-. .+.+
T Consensus 16 e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~~~~~ 94 (517)
T PF12569_consen 16 EAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSDEDVE 94 (517)
T ss_pred HCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccccccHH
Confidence 3444444444444322 122 2334455566777888888888888888775 33444445555544222 2456
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 007194 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV-AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (613)
Q Consensus 145 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 223 (613)
...++|+++... -|.......+.-.+..-..+ ..+...+..+...|++ .+|+.|-..|.......-..+++...
T Consensus 95 ~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~ 169 (517)
T PF12569_consen 95 KLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEY 169 (517)
T ss_pred HHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 667777777554 23333322222222221223 2444555666677753 35556666666555555555555554
Q ss_pred hhCC------------CCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007194 224 NAEV------------HPVDPDHI--TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (613)
Q Consensus 224 ~~~~------------~~~~~~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 289 (613)
.... ..-+|... ++..+...|...|++++|+++.++..+.. +..+..|..-...|-+.|++.+|.
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa 248 (517)
T PF12569_consen 170 VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAA 248 (517)
T ss_pred HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 3210 01123332 33455667778888888888888877764 444677777788888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH--------hHHHHHHHHHhcCCHHHHHHH
Q 007194 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII--------SYSSLMGACSNAKNWQKALEL 361 (613)
Q Consensus 290 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--------~~~~li~~~~~~g~~~~A~~~ 361 (613)
+.++.....+.. |...-+-....+.++|++++|.+++....+.+..|... .......+|.+.|++..|.+.
T Consensus 249 ~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~ 327 (517)
T PF12569_consen 249 EAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKR 327 (517)
T ss_pred HHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 888888777655 66776777777778888888888887776665322111 113344566666776666666
Q ss_pred HHHHH
Q 007194 362 YEHMK 366 (613)
Q Consensus 362 ~~~m~ 366 (613)
|..+.
T Consensus 328 ~~~v~ 332 (517)
T PF12569_consen 328 FHAVL 332 (517)
T ss_pred HHHHH
Confidence 55554
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.13 E-value=5.9e-09 Score=94.99 Aligned_cols=238 Identities=13% Similarity=0.072 Sum_probs=185.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHH
Q 007194 161 NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240 (613)
Q Consensus 161 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~l 240 (613)
|-.--+.+..+|.+.|.+.+|.+.|+.-.+. .|-+.||..|-++|.+..+...|+.++.+-.+. ++-|+....-+
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~---fP~~VT~l~g~ 296 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS---FPFDVTYLLGQ 296 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc---CCchhhhhhhh
Confidence 3333467888888999999999888888776 667778888888899999999999988887753 23344344456
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007194 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320 (613)
Q Consensus 241 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 320 (613)
...+-..++.++|.++++...+.. +.++.+...+...|.-.++++.|+..+++++..|+. +...|..+.-+|.-.+++
T Consensus 297 ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 297 ARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQI 374 (478)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcch
Confidence 677888888999999998888775 566677777788888889999999999999998887 677788888888888889
Q ss_pred HHHHHHHHHHHHCCCCcC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHH
Q 007194 321 EAAFEILQEAKNQGISVG--IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398 (613)
Q Consensus 321 ~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 398 (613)
+-++.-|.+....--.|+ ..+|..|-......|++..|.+-|+-....+ ..+...+|.|.-.-.+.|+.++|..+++
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 988888888766533333 3467777777888899999999998887654 3456788888888888999999999998
Q ss_pred HHHhCCCCCC
Q 007194 399 DMKSLGLCPN 408 (613)
Q Consensus 399 ~m~~~g~~p~ 408 (613)
.... +.|+
T Consensus 454 ~A~s--~~P~ 461 (478)
T KOG1129|consen 454 AAKS--VMPD 461 (478)
T ss_pred Hhhh--hCcc
Confidence 8766 4555
No 71
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.09 E-value=1.4e-06 Score=80.79 Aligned_cols=443 Identities=13% Similarity=0.100 Sum_probs=248.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCCh
Q 007194 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDS 108 (613)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 108 (613)
..-++.++++..|+.+++--...+- .....+..-+...+...|++++|...|..+. .++...+-.+.-.+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence 4556788899999998886654432 1222334444555567889999999887654 45566666666555667788
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007194 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (613)
Q Consensus 109 ~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (613)
.+|.++-... +.++-.-..|+...-+.++-++-..+...+.. ...---+|.+..-..-.+.+|++++.+.
T Consensus 108 ~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 8887765443 23344445556666677777777777766653 2233344555555556788888888888
Q ss_pred HhCCCCCCHHHHHHH-HHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhc--CChhHH--HHH-------
Q 007194 189 RSKNVKPDRVVFNAL-ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA--GQVDRA--REV------- 256 (613)
Q Consensus 189 ~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~--g~~~~A--~~~------- 256 (613)
... .|+-...|.- .-+|.+..-++-+.+++.--.+. ++.+....|.......+. |+..++ ..+
T Consensus 178 L~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q---~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~ 252 (557)
T KOG3785|consen 178 LQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ---FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE 252 (557)
T ss_pred Hhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh---CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc
Confidence 766 4555555543 34566777777777777666653 233333433333222221 221111 011
Q ss_pred ---HHHHHhcCC------------CC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-H
Q 007194 257 ---YKMIHKYNI------------KG-----TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA-G 315 (613)
Q Consensus 257 ---~~~~~~~~~------------~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~-~ 315 (613)
.+.+.+.++ -| -+.+.-.|+-.|.+.++..+|..+.+++.- ..|-......+..+- .
T Consensus 253 ~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalG 330 (557)
T KOG3785|consen 253 YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALG 330 (557)
T ss_pred chhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhh
Confidence 111111110 01 124455567778899999999988776532 233333333332221 1
Q ss_pred ----hcCCHHHHHHHHHHHHHCCCCcCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh
Q 007194 316 ----HAGKVEAAFEILQEAKNQGISVGII-SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390 (613)
Q Consensus 316 ----~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 390 (613)
.....+-|.+.|+..-..+..-|.. --.++...+.-..++++....+..+...=...|...+| +..+++..|.+
T Consensus 331 Qe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny 409 (557)
T KOG3785|consen 331 QETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNY 409 (557)
T ss_pred hhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcCh
Confidence 1123556667776665554433322 23445555566677888888888887654444555554 67888889999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHH-HHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhHHHHHHhhhhhh
Q 007194 391 PKTMEVLSDMKSLGLCPNTITYSILL-VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVL 469 (613)
Q Consensus 391 ~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~a~~~~~~~~ 469 (613)
.+|.++|-+.....+ .|..+|.+++ +.|.+.+.++.|+.++ ++..-..+....--+| +..--+|+++.-+..
T Consensus 410 ~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlI---An~CYk~~eFyyaaK 482 (557)
T KOG3785|consen 410 VEAEELFIRISGPEI-KNKILYKSMLARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLI---ANDCYKANEFYYAAK 482 (557)
T ss_pred HHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 999999966544322 3667776655 5668888888887665 4433333333333333 221223445444444
Q ss_pred cccCC--CCccchhhhHH---HHHHHHHHHHcCCCC
Q 007194 470 SFNSG--RPQIENKWTSL---ALMVYREAIVAGTIP 500 (613)
Q Consensus 470 ~~~~~--~~~~~~~~~~~---a~~~~~~m~~~g~~p 500 (613)
.|+.. ..+.+..|... ...+|+.+......|
T Consensus 483 AFd~lE~lDP~pEnWeGKRGACaG~f~~l~~~~~~~ 518 (557)
T KOG3785|consen 483 AFDELEILDPTPENWEGKRGACAGLFRQLANHKTDP 518 (557)
T ss_pred hhhHHHccCCCccccCCccchHHHHHHHHHcCCCCC
Confidence 44332 11222345332 345665554443333
No 72
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.08 E-value=1.4e-07 Score=95.33 Aligned_cols=240 Identities=17% Similarity=0.135 Sum_probs=169.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhC---CCC-CCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHhc-----C--
Q 007194 197 RVVFNALITACGQSGAVDRAFDVLAEMNAE---VHP-VDPDHIT-IGALMKACANAGQVDRAREVYKMIHKY-----N-- 264 (613)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~-~~~~~~~-~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~-- 264 (613)
..+...+...|...|+++.|..++....+. ..| ..|...+ .+.+...|...+++++|..+|+++... |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 446666888999999999999988876542 112 1233322 334667888999999999999887542 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCC-CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C
Q 007194 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-----KGVI-PDE-VFLSALIDFAGHAGKVEAAFEILQEAKNQ---G 334 (613)
Q Consensus 265 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~-p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~ 334 (613)
.+.-..+++.|...|.+.|++++|...+++..+ .|.. |.+ .-++.+...|+..+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 111245677888889999999988888876543 1221 222 23566677888889999999988876542 1
Q ss_pred CCc----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHcCCChhHHHHHHHHHHh-
Q 007194 335 ISV----GIISYSSLMGACSNAKNWQKALELYEHMKSI----KLK--P-TVSTMNALITALCDGDQLPKTMEVLSDMKS- 402 (613)
Q Consensus 335 ~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~- 402 (613)
+.+ -..+++.|...|-+.|++++|.++|+...+. +-+ + ....++.|...|.+.+...+|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 112 2457899999999999999999999987642 111 1 245677888899999999999999887543
Q ss_pred ---CCC-CCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 007194 403 ---LGL-CPN-TITYSILLVACERKDDVEVGLMLLSQAK 436 (613)
Q Consensus 403 ---~g~-~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (613)
.|. .|+ ..+|..|...|...|+++.|.++.+.+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 221 233 3568889999999999999999988775
No 73
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.08 E-value=2.5e-07 Score=93.50 Aligned_cols=169 Identities=13% Similarity=0.147 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-
Q 007194 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNA-----GI-EPNVH-TYGALIDGCAKAGQVAKAFGAYGIMRSK-----NV- 193 (613)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~- 193 (613)
..+...|...|...|+++.|..++....+. |. .|.+. ..+.+...|...+++.+|..+|+++... |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345555777777777777777777766543 10 12222 2233555666667777776666666431 11
Q ss_pred CCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhC---CCC-CCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhcC---
Q 007194 194 KPD-RVVFNALITACGQSGAVDRAFDVLAEMNAE---VHP-VDPDH-ITIGALMKACANAGQVDRAREVYKMIHKYN--- 264 (613)
Q Consensus 194 ~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~-~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--- 264 (613)
.|. ..+++.|..+|.+.|++++|...+++...- ..+ ..|.+ ..++.+...++..+++++|..++++..+.-
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 111 234555556666666666665555443221 001 11111 123334444555555555555554432210
Q ss_pred CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007194 265 IKG----TPEVYTIAINCCSQTGDWEFACSVYDDM 295 (613)
Q Consensus 265 ~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m 295 (613)
+.+ -..+++.|...|.+.|++++|.++|+..
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~a 393 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKA 393 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 000 1234455555555555555555555544
No 74
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.04 E-value=9.8e-06 Score=81.32 Aligned_cols=328 Identities=13% Similarity=0.156 Sum_probs=168.2
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcC-CCCCHHHHHHHHH------HHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 007194 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAG-LKADCKLYTTLIT------TCAKSGKVDAMFEVFHEMVNAGIEPNVHTY 165 (613)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~~~~~~~~~li~------~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 165 (613)
..|..+..+.--.|++..|..+++...+.. -.|+...+..... ...+.|.+++|.+.+..-... +.-....-
T Consensus 144 a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~ 222 (700)
T KOG1156|consen 144 ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFE 222 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHh
Confidence 344444444444555555555555554432 1344443332222 122344444444444332211 00011112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHccCCHHHHH-HHHHHHhhCCCCCC-CCHHHHHHHHH
Q 007194 166 GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI-TACGQSGAVDRAF-DVLAEMNAEVHPVD-PDHITIGALMK 242 (613)
Q Consensus 166 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li-~~~~~~g~~~~A~-~~~~~m~~~~~~~~-~~~~~~~~ll~ 242 (613)
.+-...+.+.+++++|..++..++.. .||..-|...+ .++.+..+.-++. .+|......-.... |-.... +++.
T Consensus 223 e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpl-svl~ 299 (700)
T KOG1156|consen 223 ETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPL-SVLN 299 (700)
T ss_pred hhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccH-HHhC
Confidence 23334455556666666666666555 44555444333 2332222222222 44444332100000 000000 0110
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CC----------CCCCHHH--
Q 007194 243 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK----KG----------VIPDEVF-- 306 (613)
Q Consensus 243 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~----------~~p~~~~-- 306 (613)
...-.+....++....+.|++ .++..+.+.|-.....+-..++.-.+.. .| -+|....
T Consensus 300 ---~eel~~~vdkyL~~~l~Kg~p---~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt 373 (700)
T KOG1156|consen 300 ---GEELKEIVDKYLRPLLSKGVP---SVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWT 373 (700)
T ss_pred ---cchhHHHHHHHHHHHhhcCCC---chhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHH
Confidence 011122333445555666654 3555555555443333322222222221 11 1445444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007194 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVG-IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (613)
Q Consensus 307 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (613)
+-.++..+-+.|+++.|...++....+. |+ +..|..=.+.+...|++++|...+++..+.+ .+|...-.--..-..
T Consensus 374 ~y~laqh~D~~g~~~~A~~yId~AIdHT--PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmL 450 (700)
T KOG1156|consen 374 LYFLAQHYDKLGDYEVALEYIDLAIDHT--PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYML 450 (700)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHhccC--chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHH
Confidence 4456778888999999999999988763 33 3455566688999999999999999998865 466544435555667
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCHHH--------HHHH--HHHHhhcCCHHHHHHHHHHH
Q 007194 386 DGDQLPKTMEVLSDMKSLGLCPNTIT--------YSIL--LVACERKDDVEVGLMLLSQA 435 (613)
Q Consensus 386 ~~g~~~~A~~l~~~m~~~g~~p~~~t--------~~~l--l~a~~~~g~~~~a~~~~~~~ 435 (613)
+.++.++|.++....-+.|. +... |-.+ ..+|.+.+++..|.+=|..+
T Consensus 451 rAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 451 RANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 88999999999998888774 3222 2111 25677787777776555444
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.00 E-value=9.1e-07 Score=85.68 Aligned_cols=219 Identities=11% Similarity=-0.024 Sum_probs=129.9
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007194 211 GAVDRAFDVLAEMNAEVHPVDPD--HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (613)
Q Consensus 211 g~~~~A~~~~~~m~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 288 (613)
+..+.+..-+.++.... ...|+ ...|..+...|.+.|+.++|...|++..+.+ +.+...|+.+...+...|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~~-~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASR-DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccc-cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 34555555665555431 22222 2345566666777777777777777777765 55677777777777777888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007194 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368 (613)
Q Consensus 289 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (613)
...|++..+.... +...+..+..++...|++++|.+.|+...+.. |+..........+...++.++|...|.+....
T Consensus 118 ~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 7777777765433 45566666667777778888888777777654 22211112222234456778888887654432
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC---C--CCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 007194 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL---G--LCP-NTITYSILLVACERKDDVEVGLMLLSQAKEDG 439 (613)
Q Consensus 369 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g--~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g 439 (613)
. .|+...| . ......|+..++ +.+..+.+. . +.| ....|..+...+.+.|++++|...|++.++.+
T Consensus 195 ~-~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 L-DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred C-CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 1 2222222 1 222234555443 344444321 0 111 23467777788888888888888888888743
No 76
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.99 E-value=2.9e-07 Score=89.11 Aligned_cols=205 Identities=12% Similarity=0.029 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007194 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (613)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (613)
..|..+...+...|+.++|...|+...+.. +.+...|+.+...+...|++++|.+.|++..+.. +-+..+|..+...+
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 346666666777777777777777777654 4456777777777777888888887777777653 23456677777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhH
Q 007194 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252 (613)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 252 (613)
...|++++|.+.|++..+. .|+..........+...++.++|...|.+.... ..|+...+ .+. ....|+...
T Consensus 143 ~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~---~~~~~~~~-~~~--~~~lg~~~~ 214 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK---LDKEQWGW-NIV--EFYLGKISE 214 (296)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh---CCccccHH-HHH--HHHccCCCH
Confidence 7778888888877777765 333221111222233456677777777654432 12332221 222 233444443
Q ss_pred HHHHHHHHHh---cCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007194 253 AREVYKMIHK---YNI---KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309 (613)
Q Consensus 253 A~~~~~~~~~---~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 309 (613)
+ ..+..+.+ ... +....+|..+...+.+.|++++|...|++..+.++ ||.+-+..
T Consensus 215 ~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~-~~~~e~~~ 275 (296)
T PRK11189 215 E-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV-YNFVEHRY 275 (296)
T ss_pred H-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-chHHHHHH
Confidence 3 23333331 111 12345777788888888888888888888776653 24444433
No 77
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.97 E-value=1e-06 Score=77.19 Aligned_cols=199 Identities=16% Similarity=0.070 Sum_probs=131.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 007194 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (613)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 209 (613)
...|.-.|...|+...|.+-+++.++.. +.+..+|..+...|.+.|+.+.|.+-|++..+.. +-+..+.|..-..+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 4445566777777777777777777664 3345567777777777777777777777776653 3344566666666777
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007194 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (613)
Q Consensus 210 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 289 (613)
.|++++|.+.|++.... .....-..+|..+.-+..+.|+.+.|...|++..+.+ +..+.+.-.+.....+.|++-.|.
T Consensus 116 qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 116 QGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 77777777777776653 1222223466666666677777777777777777665 444556666777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007194 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (613)
Q Consensus 290 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 333 (613)
..++.....+. ++..+.-..|..--..|+.+.+-+.=..+.+.
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 77777766655 56666666666666677766666555555443
No 78
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.95 E-value=7.6e-05 Score=74.96 Aligned_cols=466 Identities=12% Similarity=0.146 Sum_probs=288.3
Q ss_pred CCCCCCCCCccccccChhhhHHHHHHHH--hcCCH-HHHHHHHHHHHHcCCCCchHHHHHHHH-HH------Hh------
Q 007194 9 LQFPYPNGKHANYAHDVSEQLHSYNRLI--RQGRI-SECIDLLEDMERKGLLDMDKVYHARFF-NV------CK------ 72 (613)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~g~~-~~A~~l~~~m~~~~~~~~~~~~~~~l~-~~------~~------ 72 (613)
+-.||...+..| .-++.+|-.+| +.|.. .+-..+|++..+.-. .....++..+- +. |-
T Consensus 12 EDvpfEeEilRn-----p~svk~W~RYIe~k~~sp~k~~~~lYERal~~lp-~sykiW~~YL~~R~~~vk~~~~T~~~~~ 85 (835)
T KOG2047|consen 12 EDVPFEEEILRN-----PFSVKCWLRYIEHKAGSPDKQRNLLYERALKELP-GSYKIWYDYLKARRAQVKHLCPTDPAYE 85 (835)
T ss_pred cccchHHHHHcC-----chhHHHHHHHHHHHccCChHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHHhhccCCCChHHH
Confidence 334455444333 35778898888 45544 445667788877642 23333333321 11 11
Q ss_pred -hhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 007194 73 -SQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG-LKADCKLYTTLITTCAKSGKVDAMFEVF 150 (613)
Q Consensus 73 -~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~ 150 (613)
-++.++.++.++.+|| ..|-..+....+.|++..-...|+.....= +.-....|...+......+-++.+..++
T Consensus 86 ~vn~c~er~lv~mHkmp----RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvy 161 (835)
T KOG2047|consen 86 SVNNCFERCLVFMHKMP----RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVY 161 (835)
T ss_pred HHHHHHHHHHHHHhcCC----HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHH
Confidence 1223444444444554 468888888889999999999998877541 2223457888888888899999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHccCCHH---HHHHHHH
Q 007194 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN------VKPDRVVFNALITACGQSGAVD---RAFDVLA 221 (613)
Q Consensus 151 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~li~~~~~~g~~~---~A~~~~~ 221 (613)
+..++. ++..-+--|.-+++.+++++|.+.+....... .+.+-..|..+-...++.-+.- ....++.
T Consensus 162 rRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR 237 (835)
T KOG2047|consen 162 RRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIR 237 (835)
T ss_pred HHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHH
Confidence 998854 45557778888999999999999998876431 2445566777766666554332 2333444
Q ss_pred HHhhCCCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc----------------C
Q 007194 222 EMNAEVHPVDPD--HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT----------------G 283 (613)
Q Consensus 222 ~m~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------------g 283 (613)
.+. +.-+| ...|++|.+-|.+.|.+++|..+|++....-. +..-|+.+-+.|++- +
T Consensus 238 ~gi----~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~ 311 (835)
T KOG2047|consen 238 GGI----RRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKMELADEESG 311 (835)
T ss_pred hhc----ccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 443 33455 35789999999999999999999988776532 222233333333321 1
Q ss_pred C------HHHHHHHHHHHHHCCC-----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc------CHH
Q 007194 284 D------WEFACSVYDDMTKKGV-----------IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV------GII 340 (613)
Q Consensus 284 ~------~~~A~~~~~~m~~~~~-----------~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~ 340 (613)
+ ++-...-|+.+..... .-++..|..-+. ...|+..+-...+.+..+. +.| -..
T Consensus 312 n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~ 388 (835)
T KOG2047|consen 312 NEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGT 388 (835)
T ss_pred ChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhh
Confidence 1 2223333333332211 012223332222 2346677778888887764 122 234
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCC----------CC
Q 007194 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPT---VSTMNALITALCDGDQLPKTMEVLSDMKSLGL----------CP 407 (613)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----------~p 407 (613)
.|..+.+.|-..|+++.|+.+|++..+...+.- ..+|......=.++.+++.|+++.+......- .|
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 688899999999999999999999987543222 34666666777788999999999888754211 11
Q ss_pred -------CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhHHHHHHhhhhhhcccCCC-----
Q 007194 408 -------NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGR----- 475 (613)
Q Consensus 408 -------~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~----- 475 (613)
+...|+.+++.--..|-++..+.+++++++..+.....+-|. +--+++-.-++++.+.++.+-
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~Ny-----AmfLEeh~yfeesFk~YErgI~LFk~ 543 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINY-----AMFLEEHKYFEESFKAYERGISLFKW 543 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHH-----HHHHHhhHHHHHHHHHHHcCCccCCC
Confidence 123455566666667888888999999987554433222221 111344444455555555442
Q ss_pred CccchhhhH---------------HHHHHHHHHHHcCCCCcHH
Q 007194 476 PQIENKWTS---------------LALMVYREAIVAGTIPTVE 503 (613)
Q Consensus 476 ~~~~~~~~~---------------~a~~~~~~m~~~g~~p~~~ 503 (613)
|..-..|+. .|-.+|++.++ |..|...
T Consensus 544 p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~a 585 (835)
T KOG2047|consen 544 PNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHA 585 (835)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHH
Confidence 223345664 38889999988 7778764
No 79
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.94 E-value=1.5e-05 Score=81.63 Aligned_cols=393 Identities=14% Similarity=0.049 Sum_probs=216.8
Q ss_pred cCCHHHHHHHHHHHHHc---CCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCC---CCHHHHHHHHHHHHcCCChHHH
Q 007194 38 QGRISECIDLLEDMERK---GLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGA 111 (613)
Q Consensus 38 ~g~~~~A~~l~~~m~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 111 (613)
..+++++....-.+.++ +.+.|+..++..+.-+....|+++.+.+.|++..+ .....|+.+-..++..|.-..|
T Consensus 297 Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~A 376 (799)
T KOG4162|consen 297 RENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKA 376 (799)
T ss_pred cccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHH
Confidence 44555554443333221 12345666655555566677889999898887542 3456788888888888888888
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHH-HcCChhHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHh-----------
Q 007194 112 FQVLRLVQEAGLKA-DCKLYTTLITTCA-KSGKVDAMFEVFHEMVNA--GI--EPNVHTYGALIDGCAK----------- 174 (613)
Q Consensus 112 ~~l~~~m~~~g~~~-~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~--g~--~~~~~~~~~li~~~~~----------- 174 (613)
+.+++.-....-.| |...+-..-..|. +.+.+++++..-.+.... +. ......|-.+.-+|..
T Consensus 377 v~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR 456 (799)
T KOG4162|consen 377 VNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSER 456 (799)
T ss_pred HHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHH
Confidence 88887655432223 3333333333333 335566665555554431 10 1223334444444432
Q ss_pred cCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 007194 175 AGQVAKAFGAYGIMRSKN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253 (613)
Q Consensus 175 ~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A 253 (613)
.....++++.+++..+.+ -.|++..| +.--|+..++++.|.+...+..+-+. ..+...|..|.-.+...+++.+|
T Consensus 457 ~~~h~kslqale~av~~d~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~--~~~~~~whLLALvlSa~kr~~~A 532 (799)
T KOG4162|consen 457 DALHKKSLQALEEAVQFDPTDPLVIFY--LALQYAEQRQLTSALDYAREALALNR--GDSAKAWHLLALVLSAQKRLKEA 532 (799)
T ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhhhHHH
Confidence 123466777777776553 22333333 33345556667777777776665322 33455666666666667777777
Q ss_pred HHHHHHHHhc-CCC------------------CCHHHHHHHHHHHHhc-----------------------CCHHHHHHH
Q 007194 254 REVYKMIHKY-NIK------------------GTPEVYTIAINCCSQT-----------------------GDWEFACSV 291 (613)
Q Consensus 254 ~~~~~~~~~~-~~~------------------~~~~~~~~li~~~~~~-----------------------g~~~~A~~~ 291 (613)
+.+.+..... +.. ....+...++..+-.. ++..+|.+.
T Consensus 533 l~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~ 612 (799)
T KOG4162|consen 533 LDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAIST 612 (799)
T ss_pred HHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchh
Confidence 7776554332 110 0011122222211100 011111111
Q ss_pred HHHH-----------------HHCCC--CCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHH
Q 007194 292 YDDM-----------------TKKGV--IPDE------VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346 (613)
Q Consensus 292 ~~~m-----------------~~~~~--~p~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 346 (613)
.+.+ ...-+ .|+. ..|......+.+.+..++|...+.+..+.. +.....|....
T Consensus 613 sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G 691 (799)
T KOG4162|consen 613 SRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRG 691 (799)
T ss_pred hHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhh
Confidence 1110 00001 1111 123344455666677777776666665543 45566666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH--HHHHHHhCCCCCCHHHHHHHHHHHhhcCC
Q 007194 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME--VLSDMKSLGLCPNTITYSILLVACERKDD 424 (613)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~--l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 424 (613)
..+...|.+++|.+.|......+ +-++.+.+++...+.+.|+..-|.. ++.++.+.+ +-+...|..+...+.+.|+
T Consensus 692 ~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd 769 (799)
T KOG4162|consen 692 LLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGD 769 (799)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccc
Confidence 77777788888888887776643 2346677788888888887777776 777777743 3366778888888888888
Q ss_pred HHHHHHHHHHHHH
Q 007194 425 VEVGLMLLSQAKE 437 (613)
Q Consensus 425 ~~~a~~~~~~~~~ 437 (613)
.+.|.+.|.-..+
T Consensus 770 ~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 770 SKQAAECFQAALQ 782 (799)
T ss_pred hHHHHHHHHHHHh
Confidence 8888887776654
No 80
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.93 E-value=1e-05 Score=81.24 Aligned_cols=88 Identities=15% Similarity=0.098 Sum_probs=37.3
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CCCH--HHHHHHHHHHHh
Q 007194 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI-KGTP--EVYTIAINCCSQ 281 (613)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~~--~~~~~li~~~~~ 281 (613)
..+...|++++|.+.+++..... +.+...+..+...+...|++++|...+++...... .++. ..|..+...+..
T Consensus 122 ~~~~~~G~~~~A~~~~~~al~~~---p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRALELN---PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC---CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 34444455555555554444321 22233334444444445555555555444433221 0111 123334444445
Q ss_pred cCCHHHHHHHHHHH
Q 007194 282 TGDWEFACSVYDDM 295 (613)
Q Consensus 282 ~g~~~~A~~~~~~m 295 (613)
.|++++|..++++.
T Consensus 199 ~G~~~~A~~~~~~~ 212 (355)
T cd05804 199 RGDYEAALAIYDTH 212 (355)
T ss_pred CCCHHHHHHHHHHH
Confidence 55555555555444
No 81
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.92 E-value=1.3e-05 Score=80.67 Aligned_cols=305 Identities=15% Similarity=0.025 Sum_probs=185.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH--
Q 007194 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPNV-HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA-- 202 (613)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-- 202 (613)
...|..+...+...|+.+.+.+.+....+... .++. .........+...|++++|.+.+++..+.. +.|...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 34555566666667777776666666544321 1121 112222334567889999999998887762 334444442
Q ss_pred -HHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 007194 203 -LITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280 (613)
Q Consensus 203 -li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 280 (613)
........+..+.+.+.+... .+..|+ ......+...+...|++++|...+++..+.. +.+...+..+...|.
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~ 159 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLW----APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLE 159 (355)
T ss_pred HHHHhcccccCchhHHHHHhcc----CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 111122245555555555542 122344 3444566678899999999999999999876 666788899999999
Q ss_pred hcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CcCHHhH-H--HHHHHHHhcC
Q 007194 281 QTGDWEFACSVYDDMTKKGV-IPDE--VFLSALIDFAGHAGKVEAAFEILQEAKNQGI-SVGIISY-S--SLMGACSNAK 353 (613)
Q Consensus 281 ~~g~~~~A~~~~~~m~~~~~-~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~g 353 (613)
..|++++|...+++...... .|+. ..|..+...+...|+.++|..+++....... .+..... + .++.-+...|
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g 239 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAG 239 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcC
Confidence 99999999999999877533 2232 3455677888999999999999999864432 1222111 1 3333344444
Q ss_pred CHHHHHHH---HHHHHhCCC-CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC--C------HHHHHHHHHHHhh
Q 007194 354 NWQKALEL---YEHMKSIKL-KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP--N------TITYSILLVACER 421 (613)
Q Consensus 354 ~~~~A~~~---~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~------~~t~~~ll~a~~~ 421 (613)
....+.+. ......... ............++...|+.++|..+++.+......+ . .........++..
T Consensus 240 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~ 319 (355)
T cd05804 240 HVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFA 319 (355)
T ss_pred CCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHH
Confidence 33333322 121111100 1111222356677888999999999999887632220 1 1122222345678
Q ss_pred cCCHHHHHHHHHHHHH
Q 007194 422 KDDVEVGLMLLSQAKE 437 (613)
Q Consensus 422 ~g~~~~a~~~~~~~~~ 437 (613)
.|+.++|.+.+.....
T Consensus 320 ~g~~~~A~~~L~~al~ 335 (355)
T cd05804 320 EGNYATALELLGPVRD 335 (355)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999988765
No 82
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.92 E-value=1.8e-06 Score=75.59 Aligned_cols=196 Identities=11% Similarity=0.052 Sum_probs=120.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007194 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317 (613)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 317 (613)
..|.-.|...|+...|..-+++..+.+ +.+..+|..+...|.+.|..+.|.+-|++....... +....|.....+|..
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhC
Confidence 344556666666666666666666665 555566666666666666666666666666655433 444555555556666
Q ss_pred CCHHHHHHHHHHHHHCC-CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHH
Q 007194 318 GKVEAAFEILQEAKNQG-ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 396 (613)
Q Consensus 318 g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 396 (613)
|++++|...|++..... ..--..+|..+.-+..+.|+.+.|...|++..+.. +-...+.-.+.....+.|++..|..+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHH
Confidence 66677766666665542 22223456666666666777777777777666653 22234555666666677777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007194 397 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 397 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (613)
++.....+. ++..+.-..|..-...|+.+.+-++=.++.+
T Consensus 196 ~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 196 LERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 766655543 6666666666666666776666555555544
No 83
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.92 E-value=1.9e-05 Score=73.34 Aligned_cols=404 Identities=10% Similarity=0.071 Sum_probs=244.0
Q ss_pred hhHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHc
Q 007194 27 EQLHSYNRLI--RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCAS 104 (613)
Q Consensus 27 ~~~~~~~~l~--~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 104 (613)
.++..|-+.+ +.|++++|...+.-+...+-.| .. +...+.-...-.|.+.+|..+-.+.+. ++-.-..|....-+
T Consensus 57 ~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~-~e-l~vnLAcc~FyLg~Y~eA~~~~~ka~k-~pL~~RLlfhlahk 133 (557)
T KOG3785|consen 57 DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAP-AE-LGVNLACCKFYLGQYIEAKSIAEKAPK-TPLCIRLLFHLAHK 133 (557)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCC-cc-cchhHHHHHHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHH
Confidence 3666776666 8999999999999887765322 22 222222222335778888887766553 34444455566667
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHH
Q 007194 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA-LIDGCAKAGQVAKAFG 183 (613)
Q Consensus 105 ~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~-li~~~~~~g~~~~A~~ 183 (613)
.++-++-..+.+.+... ..---+|.......-.+++|++++...... .|+-...|. +.-+|.+..-++-+.+
T Consensus 134 lndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqe 206 (557)
T KOG3785|consen 134 LNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQE 206 (557)
T ss_pred hCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHH
Confidence 77777777776666532 122334444444555678888888888765 345444443 3345666666777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcc--CCH---------------------------------HHHHHHHHHHhhCCC
Q 007194 184 AYGIMRSKNVKPDRVVFNALITACGQS--GAV---------------------------------DRAFDVLAEMNAEVH 228 (613)
Q Consensus 184 ~~~~m~~~g~~p~~~~~~~li~~~~~~--g~~---------------------------------~~A~~~~~~m~~~~~ 228 (613)
++.-..+. ++-++...|.......+. |+. +.|++++--+..
T Consensus 207 vl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~--- 282 (557)
T KOG3785|consen 207 VLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMK--- 282 (557)
T ss_pred HHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHh---
Confidence 77666554 222333444333222221 221 122222221111
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 007194 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV-----YTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303 (613)
Q Consensus 229 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 303 (613)
+-|. .-..|+--|.+.+++.+|..+.+.+... .|-... +.++..-.....+..-|...|.-.-..+..-|
T Consensus 283 -~IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecD 357 (557)
T KOG3785|consen 283 -HIPE--ARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECD 357 (557)
T ss_pred -hChH--hhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccc
Confidence 1121 2233455688999999999988776532 232222 22222222333456678888877665554333
Q ss_pred HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHH
Q 007194 304 EV-FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN-ALI 381 (613)
Q Consensus 304 ~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~li 381 (613)
.. --.++.+.+.-..++++.+-.+..+...-...|...+ .+..+++..|++.+|.++|-++....+ .|..+|. .|.
T Consensus 358 TIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LA 435 (557)
T KOG3785|consen 358 TIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLA 435 (557)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHH
Confidence 21 1223344445556788888888888776444445444 577899999999999999988875443 3455565 456
Q ss_pred HHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHH-HHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007194 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI-LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456 (613)
Q Consensus 382 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~ 456 (613)
++|.+++.++-|.+++-.+. -+.+..+... +..-|.+.+.+--|-+.|+.+.. .+|++..|..--.+|.+
T Consensus 436 rCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWeGKRGACaG 506 (557)
T KOG3785|consen 436 RCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWEGKRGACAG 506 (557)
T ss_pred HHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccCCccchHHH
Confidence 78999999999988775553 2334455444 44779999999999999988877 56777777666666665
No 84
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=5.8e-05 Score=71.82 Aligned_cols=291 Identities=12% Similarity=0.041 Sum_probs=206.9
Q ss_pred CCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHH
Q 007194 105 SKDSEGAFQVLRLVQEA-GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH-TYGALIDGCAKAGQVAKAF 182 (613)
Q Consensus 105 ~g~~~~A~~l~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~ 182 (613)
.++-..|.+.+-.+... -++-++.....+...+...|+.++|+..|++.... .|+.. ......-.+.+.|+.+...
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHH
Confidence 34444455554444333 24567778899999999999999999999998754 33322 2222223345788888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007194 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (613)
Q Consensus 183 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 262 (613)
.+...+.... .-....|-.-........+++.|+.+-++.+... +.+...+..-...+...+++++|.-.|+....
T Consensus 287 ~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~---~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 287 ALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE---PRNHEALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred HHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC---cccchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence 8777776542 2233444444455556788899999888877532 23344444445677889999999999998887
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHh-cCCHHHHHHHHHHHHHCCCCcCHH
Q 007194 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI-DFAGH-AGKVEAAFEILQEAKNQGISVGII 340 (613)
Q Consensus 263 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li-~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~ 340 (613)
.. +.+..+|.-|+..|...|++.+|.-.-++..+. +..+..+...+. ..|.- ..--++|.++++.-.+.. |.-..
T Consensus 363 La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~ 439 (564)
T KOG1174|consen 363 LA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTP 439 (564)
T ss_pred cc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHH
Confidence 64 567889999999999999999998877765543 122445555442 22322 223478888888877664 33355
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 007194 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (613)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 408 (613)
..+.+...+...|..+.++.+++.-... .||...-+.|...+...+.+.+|++.|....+ +.|+
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~ 503 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPK 503 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCcc
Confidence 6778888899999999999999987763 69999999999999999999999999999887 4564
No 85
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=5.1e-05 Score=75.53 Aligned_cols=383 Identities=12% Similarity=0.117 Sum_probs=213.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH--hhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChH
Q 007194 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC--KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSE 109 (613)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 109 (613)
.-.||+.++|++|+.+.+.=.... ..+... +-++| -+.+..++|+..++...+.+..+...-...+.+.|+++
T Consensus 53 vValIq~~ky~~ALk~ikk~~~~~--~~~~~~---fEKAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~yd 127 (652)
T KOG2376|consen 53 VVALIQLDKYEDALKLIKKNGALL--VINSFF---FEKAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYD 127 (652)
T ss_pred HhhhhhhhHHHHHHHHHHhcchhh--hcchhh---HHHHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHH
Confidence 345679999999996655332111 111110 22222 35678999999999665666667777778899999999
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH---HHHHHhcCCHHHHHHHH
Q 007194 110 GAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL---IDGCAKAGQVAKAFGAY 185 (613)
Q Consensus 110 ~A~~l~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l---i~~~~~~g~~~~A~~~~ 185 (613)
+|+.+|+.+.+++.+.- ...-..++.+-.. -.+ ++.+.... .| ..+|..+ .-.+...|++.+|++++
T Consensus 128 ealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~-~~~q~v~~---v~-e~syel~yN~Ac~~i~~gky~qA~elL 198 (652)
T KOG2376|consen 128 EALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQV-QLLQSVPE---VP-EDSYELLYNTACILIENGKYNQAIELL 198 (652)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhH-HHHHhccC---CC-cchHHHHHHHHHHHHhcccHHHHHHHH
Confidence 99999999987763221 1111112211110 011 12222221 22 2233322 23455678888888888
Q ss_pred HHHHhC-------C------CCCCHHHH-HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHH-HHHHHHHHHhc---
Q 007194 186 GIMRSK-------N------VKPDRVVF-NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT-IGALMKACANA--- 247 (613)
Q Consensus 186 ~~m~~~-------g------~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~~~ll~~~~~~--- 247 (613)
+..... + +.-+..+. .-|.-.+-..|+..+|.+++.........-.|...+ -|.|+.+-...
T Consensus 199 ~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~ 278 (652)
T KOG2376|consen 199 EKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYF 278 (652)
T ss_pred HHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccC
Confidence 777211 1 00011111 123345566788888888877776643211111111 11111110000
Q ss_pred ------------------------------------------CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh--cC
Q 007194 248 ------------------------------------------GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ--TG 283 (613)
Q Consensus 248 ------------------------------------------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g 283 (613)
+..+.+.++-.... +..| ...+.+++....+ ..
T Consensus 279 d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp--~~~p-~~~~~~ll~~~t~~~~~ 355 (652)
T KOG2376|consen 279 DGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLP--GMSP-ESLFPILLQEATKVREK 355 (652)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCC--ccCc-hHHHHHHHHHHHHHHHH
Confidence 00111111111100 1112 2334444443332 23
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCcCHHhHHHHHHHHHhcCCH
Q 007194 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ--------EAKNQGISVGIISYSSLMGACSNAKNW 355 (613)
Q Consensus 284 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~li~~~~~~g~~ 355 (613)
.+..+.+++...-+....-.....-..+......|+++.|.+++. .+.+.+.. +.+...++..|.+.++-
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCC
Confidence 467777777777665443234556666777888999999999999 45544444 44556777888888887
Q ss_pred HHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 007194 356 QKALELYEHMKSI--KLKPT----VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429 (613)
Q Consensus 356 ~~A~~~~~~m~~~--~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 429 (613)
+.|..++.+.... .-.+. ..+|.-+...-.++|+-++|..+++++.+.. ++|..+...++.+|++. +++.|.
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHH
Confidence 7777777766431 00122 2234444445557899999999999999852 67889999999999876 577777
Q ss_pred HHHHHH
Q 007194 430 MLLSQA 435 (613)
Q Consensus 430 ~~~~~~ 435 (613)
.+-+.+
T Consensus 512 ~l~k~L 517 (652)
T KOG2376|consen 512 SLSKKL 517 (652)
T ss_pred HHhhcC
Confidence 665543
No 86
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.84 E-value=6e-05 Score=69.94 Aligned_cols=327 Identities=16% Similarity=0.158 Sum_probs=191.5
Q ss_pred CchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHH---HHHcCCChHHHHHHHHHHHHcCCCCCHHH-HHHH
Q 007194 58 DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMS---VCASSKDSEGAFQVLRLVQEAGLKADCKL-YTTL 133 (613)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~l~~~m~~~g~~~~~~~-~~~l 133 (613)
|.+..-|.-+.......|++.+|+..|......|+..|.++.+ .|...|+...|+.=+..+.+. +||-.. -..-
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 3444455666666666778888888887777666666666553 477777777777777777754 666332 1222
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH
Q 007194 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213 (613)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 213 (613)
...+.+.|.++.|..-|+.+++. .|+..+ ...++.+.--.++-. .....+..+...|+.
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~--~~s~~~---~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~ 171 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQH--EPSNGL---VLEAQSKLALIQEHW----------------VLVQQLKSASGSGDC 171 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhc--CCCcch---hHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCch
Confidence 34556778888888888877765 333211 111222111111111 122334455667888
Q ss_pred HHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007194 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293 (613)
Q Consensus 214 ~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 293 (613)
..|+.....+.+. .+-|...+..-..+|...|++..|+.=++...+.. ..+...+.-+-..+...|+.+.++...+
T Consensus 172 ~~ai~~i~~llEi---~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iR 247 (504)
T KOG0624|consen 172 QNAIEMITHLLEI---QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIR 247 (504)
T ss_pred hhHHHHHHHHHhc---CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 8888888887763 24466667777788888888888888887777665 4556666677778888888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 007194 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373 (613)
Q Consensus 294 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 373 (613)
+.++. .||....-.. | ..+.+..+.+..|.+ ....+++-++.+-.+...+......
T Consensus 248 ECLKl--dpdHK~Cf~~---Y---KklkKv~K~les~e~----------------~ie~~~~t~cle~ge~vlk~ep~~~ 303 (504)
T KOG0624|consen 248 ECLKL--DPDHKLCFPF---Y---KKLKKVVKSLESAEQ----------------AIEEKHWTECLEAGEKVLKNEPEET 303 (504)
T ss_pred HHHcc--CcchhhHHHH---H---HHHHHHHHHHHHHHH----------------HHhhhhHHHHHHHHHHHHhcCCccc
Confidence 88775 3454321111 1 112222222222221 1223444444444444444321111
Q ss_pred HH---HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007194 374 VS---TMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 374 ~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (613)
.+ .+..+-.++...|++.+|++...+.++ +.|| ..++.--..+|.-..+++.|+.-|+...+
T Consensus 304 ~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 304 MIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred ceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 22 223344555566667777777666665 3454 55666666666666677777777766665
No 87
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.81 E-value=0.0001 Score=84.14 Aligned_cols=337 Identities=9% Similarity=-0.041 Sum_probs=207.1
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCC------CCC--HHHHHHHHHHHH
Q 007194 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI------EPN--VHTYGALIDGCA 173 (613)
Q Consensus 102 ~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~------~~~--~~~~~~li~~~~ 173 (613)
....|+++.+...++.+.......+..........+...|+++++..++......-- .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 445677777666665542211112222333445555678899999988887654210 111 112223334566
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC-C--CHHHHHHHHHHHHh
Q 007194 174 KAGQVAKAFGAYGIMRSKNVKPDR----VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD-P--DHITIGALMKACAN 246 (613)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~--~~~~~~~ll~~~~~ 246 (613)
..|+++.|...+++....-...+. ...+.+...+...|++++|...+.+......... + ...+...+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 789999999999987653111121 2345556667788999999999888764211111 1 12344556677888
Q ss_pred cCChhHHHHHHHHHHhc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCC--CHHHHHHHHHHHH
Q 007194 247 AGQVDRAREVYKMIHKY----NIK--G-TPEVYTIAINCCSQTGDWEFACSVYDDMTKK--GVIP--DEVFLSALIDFAG 315 (613)
Q Consensus 247 ~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p--~~~~~~~li~~~~ 315 (613)
.|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+.... ...+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 99999999988776442 211 1 1233455666677789999999998887542 1112 2234444556777
Q ss_pred hcCCHHHHHHHHHHHHHCC--CCcCHH--h--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHc
Q 007194 316 HAGKVEAAFEILQEAKNQG--ISVGII--S--YSSLMGACSNAKNWQKALELYEHMKSIKLKPT---VSTMNALITALCD 386 (613)
Q Consensus 316 ~~g~~~~A~~~~~~~~~~~--~~~~~~--~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~ 386 (613)
..|+.+.|...+....... ...... . ....+..+...|+.+.|...+........... ...+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 8899999999888875421 111111 0 01122445568899999998877654221111 1123456677888
Q ss_pred CCChhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 007194 387 GDQLPKTMEVLSDMKSL----GLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 438 (613)
Q Consensus 387 ~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (613)
.|++++|...+++.... |..++ ..+...+..++.+.|+.++|...+.+..+.
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999887652 33332 235566667888999999999999998864
No 88
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.74 E-value=5.5e-07 Score=85.90 Aligned_cols=80 Identities=26% Similarity=0.270 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 007194 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV-EAAFEILQ 328 (613)
Q Consensus 250 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~ 328 (613)
+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+....+.. +..++..++......|+. +.+.+.+.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 44444444444332 2334444444444444444444444444444433222 333333344444444443 33334444
Q ss_pred HHH
Q 007194 329 EAK 331 (613)
Q Consensus 329 ~~~ 331 (613)
++.
T Consensus 261 qL~ 263 (290)
T PF04733_consen 261 QLK 263 (290)
T ss_dssp HCH
T ss_pred HHH
Confidence 443
No 89
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.71 E-value=6.7e-05 Score=76.25 Aligned_cols=193 Identities=15% Similarity=0.171 Sum_probs=104.9
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH
Q 007194 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214 (613)
Q Consensus 135 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 214 (613)
.+......+.+|+.+++.+..+. .-..-|..+.+.|+..|+++.|.++|.+. ..++-.|..|.+.|+++
T Consensus 740 eaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHH
Confidence 34444556666666666665432 12233555666666677777776666543 13445566667777777
Q ss_pred HHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007194 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294 (613)
Q Consensus 215 ~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 294 (613)
.|.++-.+.. +.......|.+-..-.-+.|++.+|.+++-.+.. |+ .-|.+|-+.|..+..+++..+
T Consensus 809 da~kla~e~~----~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 809 DAFKLAEECH----GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHhc----CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHH
Confidence 7666665543 2233344444444555566666666666543322 21 235566666666666665554
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 007194 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363 (613)
Q Consensus 295 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (613)
-.... -..|...+..-+...|++..|..-|-+. .-|.+-+++|-..+.+++|.++-+
T Consensus 876 ~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea---------~d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 876 HHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEA---------GDFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred hChhh---hhHHHHHHHHHHHhccChhHHHHHHHhh---------hhHHHHHHHhhhhhhHHHHHHHHh
Confidence 32111 1234444555566667777666655332 234556666766777777666543
No 90
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=0.00012 Score=72.36 Aligned_cols=385 Identities=14% Similarity=0.070 Sum_probs=220.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC--CCC-HHHHHHHHHHHHcCCCh
Q 007194 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPT-LSTFNMLMSVCASSKDS 108 (613)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~ 108 (613)
-|.....|+++.|+.+|.+.+..+ |.|.+.++.-...+.+.|++++|++=-.+.. .|+ ...|+-...++.-.|++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccH
Confidence 466778999999999999999887 6687777777778888899998887655433 333 45788899999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh---HHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh--------
Q 007194 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFEVFHEMVNAG---IEPNVHTYGALIDGCAK-------- 174 (613)
Q Consensus 109 ~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~---~a~~~~~~m~~~g---~~~~~~~~~~li~~~~~-------- 174 (613)
++|+..|.+-.+.. +.+...++.+.+++....... ..-.++..+...- .......|..++..+-+
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 99999999888764 455667777777762110000 0001111111100 00011122222222111
Q ss_pred --cCCHHHHHHHHHHH-----HhCC-------CCC------------C----------HHHHHHHHHHHHccCCHHHHHH
Q 007194 175 --AGQVAKAFGAYGIM-----RSKN-------VKP------------D----------RVVFNALITACGQSGAVDRAFD 218 (613)
Q Consensus 175 --~g~~~~A~~~~~~m-----~~~g-------~~p------------~----------~~~~~~li~~~~~~g~~~~A~~ 218 (613)
-.++..|...+... ...| ..| | ..-...+.++.-+..+++.|.+
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 11111222111110 0000 111 1 1124457777777888888888
Q ss_pred HHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHH-------HHHHHHHHHHhcCCHHHHHHH
Q 007194 219 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE-------VYTIAINCCSQTGDWEFACSV 291 (613)
Q Consensus 219 ~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~ 291 (613)
-+...... ..+..-++....+|...|.+......-....+.|.. ... .+..+..+|.+.++++.|+..
T Consensus 246 ~y~~a~el----~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~ 320 (539)
T KOG0548|consen 246 HYAKALEL----ATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKY 320 (539)
T ss_pred HHHHHHhH----hhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence 88887653 334444556667788888877777666665555421 111 233345567777888999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 007194 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371 (613)
Q Consensus 292 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 371 (613)
|.+.......|+..+ +....+++........-.+... ..-...-...+.+.|++..|.+.|.++.... +
T Consensus 321 ~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P 389 (539)
T KOG0548|consen 321 YQKALTEHRTPDLLS---------KLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-P 389 (539)
T ss_pred HHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-C
Confidence 988776555544322 1122233333332222211111 1111112445566777777777777766654 3
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007194 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 372 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (613)
-|...|.....+|.+.|.+..|++-.+..++. .|+ ...|..=..++....+++.|.+.|.+..+
T Consensus 390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 390 EDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666777777777777777777666665553 343 23344444555566677777777776665
No 91
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.68 E-value=0.00023 Score=81.27 Aligned_cols=332 Identities=9% Similarity=0.001 Sum_probs=210.0
Q ss_pred hhhHHHHHHHHHHHhCCC----CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCC------CCCH--HHHHHHHHHHHH
Q 007194 72 KSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL------KADC--KLYTTLITTCAK 139 (613)
Q Consensus 72 ~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~------~~~~--~~~~~li~~~~~ 139 (613)
...|+.+.+...++.++. .+..........+...|++++|...+....+.-- .+.. .....+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 344667777777777641 2222333444556678999999999987754310 1111 122223345567
Q ss_pred cCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCC--HHHHHHHHHHHHcc
Q 007194 140 SGKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAGQVAKAFGAYGIMRSKNV---KPD--RVVFNALITACGQS 210 (613)
Q Consensus 140 ~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~~~~~li~~~~~~ 210 (613)
.|++++|...+++....--..+. ...+.+...+...|++++|...+++.....- .+. ..++..+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 89999999999987753111221 3455666777889999999999988764210 111 23445566778889
Q ss_pred CCHHHHHHHHHHHhhCC--CCCC--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCC--CHHHHHHHHHHHHh
Q 007194 211 GAVDRAFDVLAEMNAEV--HPVD--P-DHITIGALMKACANAGQVDRAREVYKMIHKYN--IKG--TPEVYTIAINCCSQ 281 (613)
Q Consensus 211 g~~~~A~~~~~~m~~~~--~~~~--~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~~li~~~~~ 281 (613)
|++++|...+++..... .+.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+..
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 99999999887764421 1111 1 22334455666778899999999998765431 111 23345556677888
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC---HHhHHHHHHHHHhc
Q 007194 282 TGDWEFACSVYDDMTKKGVI-PDEVFL-----SALIDFAGHAGKVEAAFEILQEAKNQGISVG---IISYSSLMGACSNA 352 (613)
Q Consensus 282 ~g~~~~A~~~~~~m~~~~~~-p~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~ 352 (613)
.|++++|...+......... .....+ ...+..+...|+.+.|...+........... ...+..+..++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 99999999999887542110 011111 1122444567899999988776543221111 11234667778899
Q ss_pred CCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 007194 353 KNWQKALELYEHMKSI----KLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (613)
Q Consensus 353 g~~~~A~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 403 (613)
|+.++|...+++.... |..++ ..+...+..++.+.|+.++|...+.+..+.
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999987642 22222 345666778888999999999999998875
No 92
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.67 E-value=1.2e-06 Score=83.64 Aligned_cols=223 Identities=16% Similarity=0.142 Sum_probs=95.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHH
Q 007194 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 243 (613)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~ 243 (613)
....+.++|...|+.+.++ .++.... .|.......+...+....+-+.+..-+.+..... ....+..........
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~-~~~~~~~~~~~~A~i 111 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQ-AGESNEIVQLLAATI 111 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS----CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhc-cccccHHHHHHHHHH
Confidence 3344555555666555433 2232222 4444444433333333233444444443332211 001122222222234
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCC
Q 007194 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH----AGK 319 (613)
Q Consensus 244 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~ 319 (613)
+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.+ .|. +...+..++.. .+.
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~-~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDS-ILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCH-HHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcH-HHHHHHHHHHHHHhCchh
Confidence 44556666665555431 233445555566666666666666666665442 122 22223332221 223
Q ss_pred HHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh-hHHHHHHH
Q 007194 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL-PKTMEVLS 398 (613)
Q Consensus 320 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~l~~ 398 (613)
+.+|..+|+++.+. .++++.+.|.+..++...|++++|.+++.+..+.+ +.+..+...+|......|+. +.+.+++.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 55555555554433 34455555555555555555555555555554432 22344444444444444444 33444555
Q ss_pred HHHh
Q 007194 399 DMKS 402 (613)
Q Consensus 399 ~m~~ 402 (613)
++..
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 5444
No 93
>PF12854 PPR_1: PPR repeat
Probab=98.67 E-value=3.4e-08 Score=59.81 Aligned_cols=32 Identities=53% Similarity=0.865 Sum_probs=15.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007194 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (613)
Q Consensus 157 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (613)
|+.||..|||+||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
No 94
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.66 E-value=0.00021 Score=73.50 Aligned_cols=361 Identities=12% Similarity=0.022 Sum_probs=235.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC--C--C-CHHHHHHHHHHHHc-CCCh
Q 007194 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--N--P-TLSTFNMLMSVCAS-SKDS 108 (613)
Q Consensus 35 l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~--~-~~~~~~~li~~~~~-~g~~ 108 (613)
+...|+++.+.+.|++....-+ .....++.. .-.+...|.-..|..+.+.-. . | ++..+-..-+.|.+ .+..
T Consensus 333 l~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~-als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~ 410 (799)
T KOG4162|consen 333 LSRCGQFEVLAEQFEQALPFSF-GEHERWYQL-ALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLV 410 (799)
T ss_pred HHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHH-HHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhh
Confidence 4478999999999998776543 223333322 222333455667788876532 2 3 34444444444544 4677
Q ss_pred HHHHHHHHHHHHc--CC--CCCHHHHHHHHHHHHHc-----------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007194 109 EGAFQVLRLVQEA--GL--KADCKLYTTLITTCAKS-----------GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (613)
Q Consensus 109 ~~A~~l~~~m~~~--g~--~~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (613)
++++..-.+.... +. ......|..+.-+|... ....++++.+++..+.+ +-|..+.-.+.--|+
T Consensus 411 eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp~~if~lalq~A 489 (799)
T KOG4162|consen 411 EEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDPLVIFYLALQYA 489 (799)
T ss_pred hhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 7777776666651 11 12344555555555432 12356788888887765 223333333444577
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC------------------CCCHH
Q 007194 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV------------------DPDHI 235 (613)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~------------------~~~~~ 235 (613)
..++.+.|.+..++..+.+-.-+...|..+.-.+...+++.+|+.+.+....+. +. ..-..
T Consensus 490 ~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~ 568 (799)
T KOG4162|consen 490 EQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIELTFNDREEALD 568 (799)
T ss_pred HHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhhhhcccHHHHHH
Confidence 888999999999999887656788889888888888899999988887665531 11 01123
Q ss_pred HHHHHHHHHH------hc-----------------CChhHHHHHHHHH----H----hcC---------CCC--C-----
Q 007194 236 TIGALMKACA------NA-----------------GQVDRAREVYKMI----H----KYN---------IKG--T----- 268 (613)
Q Consensus 236 ~~~~ll~~~~------~~-----------------g~~~~A~~~~~~~----~----~~~---------~~~--~----- 268 (613)
|+..++..+- .. .+..+|.+....+ . ..+ +.| +
T Consensus 569 t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~ 648 (799)
T KOG4162|consen 569 TCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYL 648 (799)
T ss_pred HHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHH
Confidence 4444443332 00 1122222221111 1 111 111 1
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 007194 269 -PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (613)
Q Consensus 269 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 347 (613)
...|......+.+.+..++|...+.+...... -....|......+...|...+|.+.|......+ +.++...+++..
T Consensus 649 ~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~-l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~ 726 (799)
T KOG4162|consen 649 LQKLWLLAADLFLLSGNDDEARSCLLEASKIDP-LSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAE 726 (799)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHhcch-hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 23466777888888999999888887766532 255666666677788899999999999888775 566788999999
Q ss_pred HHHhcCCHHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007194 348 ACSNAKNWQKALE--LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (613)
Q Consensus 348 ~~~~~g~~~~A~~--~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (613)
++.+.|+...|.. ++..+.+.+ +.+...|-.+...+-+.|+.++|.+.|.-..+
T Consensus 727 ~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 727 LLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 9999999888877 999999876 56789999999999999999999999988765
No 95
>PF12854 PPR_1: PPR repeat
Probab=98.65 E-value=3.3e-08 Score=59.89 Aligned_cols=32 Identities=28% Similarity=0.597 Sum_probs=17.6
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 007194 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (613)
Q Consensus 369 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 400 (613)
|+.||..|||+||.+|++.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
No 96
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.62 E-value=0.00015 Score=67.36 Aligned_cols=306 Identities=12% Similarity=0.063 Sum_probs=188.4
Q ss_pred ccccChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC--CCCHHH-HH
Q 007194 20 NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLST-FN 96 (613)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~-~~ 96 (613)
..|.++......-+.|+.+|++..|+.-|....+-+ |.+......-...+...|...-|+.-|.++. .||-.. --
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARi 110 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARI 110 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHH
Confidence 345566667777888999999999999999999877 6666554444555666666666666666654 343221 11
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCCCCC--HHHH------------HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 007194 97 MLMSVCASSKDSEGAFQVLRLVQEAGLKAD--CKLY------------TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV 162 (613)
Q Consensus 97 ~li~~~~~~g~~~~A~~l~~~m~~~g~~~~--~~~~------------~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 162 (613)
--...+.+.|.++.|..=|+.+..+..... ...+ ...+..+...|+...|+.....+++.. +.|.
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda 189 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDA 189 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchh
Confidence 123457899999999999999987642111 1111 223334456788888888888888764 5688
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHH-
Q 007194 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM- 241 (613)
Q Consensus 163 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll- 241 (613)
..+..-..+|...|++..|+.-++...+.. .-++.++--+-..+...|+.+.++....+..+ +.||...+-..-
T Consensus 190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK----ldpdHK~Cf~~YK 264 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK----LDPDHKLCFPFYK 264 (504)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc----cCcchhhHHHHHH
Confidence 888888888999999988887777665543 33455666666777788888888888877764 466654332111
Q ss_pred ------------HHHHhcCChhHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 007194 242 ------------KACANAGQVDRAREVYKMIHKYNIKGTP---EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306 (613)
Q Consensus 242 ------------~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 306 (613)
......+++.++.+-.+...+.+..... ..+..+-.++...+++.+|+..-.+.+..... |+.+
T Consensus 265 klkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~-dv~~ 343 (504)
T KOG0624|consen 265 KLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD-DVQV 343 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch-HHHH
Confidence 1122334444444444444443211111 12334445555556666666666665554221 3455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007194 307 LSALIDFAGHAGKVEAAFEILQEAKNQG 334 (613)
Q Consensus 307 ~~~li~~~~~~g~~~~A~~~~~~~~~~~ 334 (613)
+.--..+|.-...++.|+.-|+...+.+
T Consensus 344 l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 344 LCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 5555555555555666666666555543
No 97
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.62 E-value=0.00012 Score=77.19 Aligned_cols=149 Identities=10% Similarity=0.035 Sum_probs=85.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChHHHHHH
Q 007194 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQV 114 (613)
Q Consensus 38 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l 114 (613)
..+...|+..|-+..+.+ +.-...+..++.+++...+..-|.+-|++.. ..+...+......|++..+++.|..+
T Consensus 471 rK~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHH
Confidence 455778888888888777 4445556678888887778888888888754 45666777888888888888888777
Q ss_pred HHHHHHcCC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007194 115 LRLVQEAGL-KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (613)
Q Consensus 115 ~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (613)
.-..-+... ..-...|....-.|.+.++...|..-|+...+.. +.|...|..+..+|.++|++..|+++|.+..
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs 623 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKAS 623 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence 322211100 0001112222223334444445555554444433 2344455555555555555555555554443
No 98
>PLN02789 farnesyltranstransferase
Probab=98.62 E-value=0.00011 Score=71.32 Aligned_cols=212 Identities=11% Similarity=0.011 Sum_probs=137.8
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007194 97 MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (613)
Q Consensus 97 ~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 175 (613)
.+-..+...++.++|+.+...+.+.. +-+..+|+..-.++...| ++++++..++++.+.. +.+..+|+.....+.+.
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l 119 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHc
Confidence 33344556678888888888888764 334456666666666666 5788888888887764 44566777665555566
Q ss_pred CCH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhc---CCh
Q 007194 176 GQV--AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA---GQV 250 (613)
Q Consensus 176 g~~--~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~---g~~ 250 (613)
|+. ++++.+++++.+.. +-|..+|+....++...|+++++++.++++.+.. +.|...|+.....+.+. |..
T Consensus 120 ~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d---~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 120 GPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED---VRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred CchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC---CCchhHHHHHHHHHHhccccccc
Confidence 653 56777787777664 4567778877777778888888888888887642 34555666555444443 222
Q ss_pred ----hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007194 251 ----DRAREVYKMIHKYNIKGTPEVYTIAINCCSQT----GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (613)
Q Consensus 251 ----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 316 (613)
++......++.... +.+..+|+-+...+... +...+|.+.+.+....++. +...+..|++.|+.
T Consensus 196 ~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred cccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 35566666666654 55667787777777663 3345577777776654433 55666667776664
No 99
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.58 E-value=4.1e-05 Score=83.32 Aligned_cols=231 Identities=12% Similarity=0.040 Sum_probs=173.2
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHH
Q 007194 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD---PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270 (613)
Q Consensus 194 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 270 (613)
+-+...|-.-|.-....++.++|.+++++....- .+. --...|.++++.-...|.-+...++|+++.+.. ..-.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tI-N~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTI-NFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhC-CcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHH
Confidence 4456678888888888899999999998887531 111 113467777777777788888889999887753 2245
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CcCHHhHHHHHHHH
Q 007194 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI-SVGIISYSSLMGAC 349 (613)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~ 349 (613)
+|..|...|.+.+.+++|.++++.|.+.-- -....|...+..+.+..+-+.|..++.+..+.-. .-......-.+..-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 788899999999999999999999987632 3567888888999998888899999988876521 12355566667777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhhcCCHHH
Q 007194 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT--ITYSILLVACERKDDVEV 427 (613)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~ 427 (613)
.+.|+.+.++.+|+...... +.-...|+..|+.-.++|+.+.+..+|++....++.|-. ..|.-.|.--...|+-+.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 88999999999999887653 445678999999999999999999999999988877743 445555554444555443
Q ss_pred HH
Q 007194 428 GL 429 (613)
Q Consensus 428 a~ 429 (613)
+.
T Consensus 1690 vE 1691 (1710)
T KOG1070|consen 1690 VE 1691 (1710)
T ss_pred HH
Confidence 33
No 100
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=0.00029 Score=64.27 Aligned_cols=188 Identities=13% Similarity=0.083 Sum_probs=128.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC--CCCHHHHHH-HHHHHHcCC
Q 007194 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNM-LMSVCASSK 106 (613)
Q Consensus 30 ~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~-li~~~~~~g 106 (613)
.+...||+..++..|++++..-.++. |.+..-.+.++..+-...++..|-..|+++. .|...-|.. -...+-+.+
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 34457899999999999999888876 6566666666666677788999999998865 344433332 235566788
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007194 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITT--CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184 (613)
Q Consensus 107 ~~~~A~~l~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 184 (613)
.+..|+.+...|... |....-..-+.+ ....+++..+..+.++.... .+..+.+...-...+.|+++.|.+-
T Consensus 93 i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHH
Confidence 899999998887642 222221111222 22467888888888887642 2444445455555688999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 007194 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (613)
Q Consensus 185 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 226 (613)
|....+-+-......||.-+ +..+.|+.+.|++...++...
T Consensus 167 FqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIER 207 (459)
T ss_pred HHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHh
Confidence 99887754344456777554 455678899999988888764
No 101
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.54 E-value=7.9e-06 Score=83.12 Aligned_cols=216 Identities=14% Similarity=0.068 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007194 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (613)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 208 (613)
.-..+...+.+.|-...|..+|+++. .|.-+|.+|+..|+..+|..+..+-.++ +||...|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 33455666677777777777777654 3566777777777777777777776664 677777777777766
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007194 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (613)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 288 (613)
...-+++|.++++..... .-..+.....+.++++++.+.|+.-.+.+ +....+|-....+..+.++++.|
T Consensus 469 d~s~yEkawElsn~~sar---------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR---------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ChHHHHHHHHHhhhhhHH---------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHH
Confidence 666677777777665431 11111112233567777777777666554 44556777777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007194 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (613)
Q Consensus 289 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (613)
.+.|.......+. +...|+.+-.+|.+.++-.+|...+.+..+.+ .-+..+|-..+....+.|.+++|.+.+.++..
T Consensus 539 v~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 539 VKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 7777776665332 44567777777777777777777777777766 44556666666667777777777777776654
No 102
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=0.001 Score=70.49 Aligned_cols=244 Identities=15% Similarity=0.154 Sum_probs=133.6
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 007194 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFD 218 (613)
Q Consensus 139 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 218 (613)
..+-+++|..+|++. ..+....+.||. .-+..+.|.+.-++.- .+..|+.+..+-.+.|.+.+|.+
T Consensus 1060 ~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAie 1125 (1666)
T KOG0985|consen 1060 ENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIE 1125 (1666)
T ss_pred hhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHH
Confidence 344445555555443 233444444443 2344455544443332 23567777777777777777776
Q ss_pred HHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007194 219 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 219 ~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 298 (613)
-|-+. .|...|.-+++...+.|.+++-.+.+....+..-.|. +-+.||-+|++.++..+..+++.
T Consensus 1126 Syika--------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi~----- 1190 (1666)
T KOG0985|consen 1126 SYIKA--------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFIA----- 1190 (1666)
T ss_pred HHHhc--------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHhc-----
Confidence 66432 2445667777777777777777777766665544433 34567777777777665444331
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007194 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378 (613)
Q Consensus 299 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 378 (613)
-||......+.+-|...|.++.|.-++.. +.-|..|...+...|++..|..--++. .+..+|-
T Consensus 1191 --gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK 1253 (1666)
T KOG0985|consen 1191 --GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWK 1253 (1666)
T ss_pred --CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHH
Confidence 25666666666666666776666666543 334556666666666666665544432 2445666
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Q 007194 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433 (613)
Q Consensus 379 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 433 (613)
.+-.+|...+.+.-| +|.-..+.....-..-++.-|...|-+++...+++
T Consensus 1254 ~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~E 1303 (1666)
T KOG0985|consen 1254 EVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLE 1303 (1666)
T ss_pred HHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHH
Confidence 665565555444322 22222222233344455555555555555555544
No 103
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.52 E-value=0.0015 Score=64.79 Aligned_cols=386 Identities=12% Similarity=0.118 Sum_probs=215.2
Q ss_pred CchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007194 58 DMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134 (613)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li 134 (613)
|.+......+++-+..+ ..++++..++++. +-....|..-|..-....+++....+|.+....- .+...|..-+
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHH
Confidence 67777777788777766 7899999999875 3456789999999999999999999999888653 3455666555
Q ss_pred HHHHHc-CChhH----HHHHHHHH-HHCCCCC-CHHHHHHHHHH---------HHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 007194 135 TTCAKS-GKVDA----MFEVFHEM-VNAGIEP-NVHTYGALIDG---------CAKAGQVAKAFGAYGIMRSKNVKPDRV 198 (613)
Q Consensus 135 ~~~~~~-g~~~~----a~~~~~~m-~~~g~~~-~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~g~~p~~~ 198 (613)
+.-.+. ++... ..+.|+-. .+.|+.+ +...|+..+.. |..+.+++...++|.++...-+.-=..
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 543332 33322 22334332 3345443 23345555543 344556778888888887642211111
Q ss_pred HHH------HHHHHH-------HccCCHHHHHHHHHHHhhCCCCCCCCHHH---------------HHHHHHHHHhcCCh
Q 007194 199 VFN------ALITAC-------GQSGAVDRAFDVLAEMNAEVHPVDPDHIT---------------IGALMKACANAGQV 250 (613)
Q Consensus 199 ~~~------~li~~~-------~~~g~~~~A~~~~~~m~~~~~~~~~~~~~---------------~~~ll~~~~~~g~~ 250 (613)
.|+ .=|+.. -+...+..|.++++++..-..|+..+..+ |..+|.. -+.+-+
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w-EksNpL 252 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW-EKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH-HhcCCc
Confidence 222 111111 12234556666666654322232221111 3233321 111111
Q ss_pred h---------HHHHHHHH-HHhcCCCCCHHHHHHHHH-------HHHhcCC-------HHHHHHHHHHHHHCCCCCCHHH
Q 007194 251 D---------RAREVYKM-IHKYNIKGTPEVYTIAIN-------CCSQTGD-------WEFACSVYDDMTKKGVIPDEVF 306 (613)
Q Consensus 251 ~---------~A~~~~~~-~~~~~~~~~~~~~~~li~-------~~~~~g~-------~~~A~~~~~~m~~~~~~p~~~~ 306 (613)
. ...-.+++ +.-.+..| .+|----. .+...|+ -+++.++++.....-..-+..+
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~p--eiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~L 330 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHP--EIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLL 330 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11111111 11122222 22221111 1222222 3455555555443222223333
Q ss_pred HHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHH
Q 007194 307 LSALIDFAGHA---GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-TVSTMNALIT 382 (613)
Q Consensus 307 ~~~li~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~ 382 (613)
|..+...--.. ...+....+++++...-...-..+|..+++.--+..-++.|+.+|.+..+.+..+ ++..+++++.
T Consensus 331 y~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE 410 (656)
T KOG1914|consen 331 YFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME 410 (656)
T ss_pred HHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH
Confidence 33333211111 1244555566665544322234567788888888888899999999998877666 6778888888
Q ss_pred HHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHH
Q 007194 383 ALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN--LVMFKCIIG 452 (613)
Q Consensus 383 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~--~~~~~~li~ 452 (613)
-|| .++.+-|.++|+.-.+. -+| ..-....++-+.+.++-..++.+|++.+..++.|+ ..+|..+|+
T Consensus 411 y~c-skD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~ 480 (656)
T KOG1914|consen 411 YYC-SKDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLE 480 (656)
T ss_pred HHh-cCChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHH
Confidence 777 46778888998874442 234 34445667777888888889999999887766655 456777776
No 104
>PLN02789 farnesyltranstransferase
Probab=98.51 E-value=0.00024 Score=68.89 Aligned_cols=209 Identities=7% Similarity=0.000 Sum_probs=137.0
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC-
Q 007194 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG-QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA- 212 (613)
Q Consensus 135 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~- 212 (613)
..+...++.++|+.+.+++++.. +-+..+|+..-..+...| .+++++..++++.+.+ +.+..+|+..-..+.+.|.
T Consensus 45 a~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCch
Confidence 33445678889999999888763 334556776666666777 5789999998888764 4455567755555555555
Q ss_pred -HHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---CCH---
Q 007194 213 -VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT---GDW--- 285 (613)
Q Consensus 213 -~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~--- 285 (613)
.+++..+++.+.... +-|..+|+...-++.+.|+++++++.++++.+.+ +.+..+|+.....+.+. |..
T Consensus 123 ~~~~el~~~~kal~~d---pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 123 AANKELEFTRKILSLD---AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred hhHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhcccccccccc
Confidence 266777887777642 4567788888888888888999999999888877 45667777666555544 222
Q ss_pred -HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHh
Q 007194 286 -EFACSVYDDMTKKGVIPDEVFLSALIDFAGHA----GKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (613)
Q Consensus 286 -~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 351 (613)
++.++...++....+. |...|+.+...+... +...+|...+.+..+.+ +.+......|++.|+.
T Consensus 199 ~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 199 RDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 3555666566655443 556666666666552 33455666666655543 3455666667776664
No 105
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.49 E-value=1.1e-05 Score=82.20 Aligned_cols=212 Identities=12% Similarity=0.037 Sum_probs=96.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHh
Q 007194 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246 (613)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~ 246 (613)
.+...+...|-...|..+|++. ..|.-+|.+|...|+..+|..+..+..++ +||...|..+.+....
T Consensus 403 ~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek----~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK----DPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC----CCcchhHHHhhhhccC
Confidence 3444445555555555555544 23444455555555555555555444432 4455555555444444
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007194 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326 (613)
Q Consensus 247 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 326 (613)
..-+++|.++++....+ +-..+.......++++++.+.|+.-.+...- -..+|-..-.+..+.+++..|.+.
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHHH
Confidence 44445555554433222 0111111112245555555555544433221 223444444444445555555555
Q ss_pred HHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 007194 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (613)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 401 (613)
|..-.... +.+...||.+-.+|.+.|+-.+|...+.+..+.+ ..+...|...+....+-|.+++|++.+.++.
T Consensus 542 F~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 542 FHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 54444332 3334455555555555555555555555555444 2333344444444445555555555554443
No 106
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.49 E-value=0.0017 Score=67.32 Aligned_cols=71 Identities=20% Similarity=0.215 Sum_probs=39.0
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHcCCChHHHHHH
Q 007194 36 IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP-TLSTFNMLMSVCASSKDSEGAFQV 114 (613)
Q Consensus 36 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l 114 (613)
++.|.+++|..++.+..+-+ ++-+++.+.|.+++|+++-+.-..- =..||..-..-+-..++.+.|++.
T Consensus 811 ieLgMlEeA~~lYr~ckR~D----------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRYD----------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHHH----------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHH
Confidence 47788888888888877755 2334455566677776665432111 012333333344445555555555
Q ss_pred HH
Q 007194 115 LR 116 (613)
Q Consensus 115 ~~ 116 (613)
|+
T Consensus 881 yE 882 (1416)
T KOG3617|consen 881 YE 882 (1416)
T ss_pred HH
Confidence 44
No 107
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.46 E-value=0.00055 Score=69.89 Aligned_cols=108 Identities=22% Similarity=0.342 Sum_probs=46.4
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007194 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323 (613)
Q Consensus 244 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 323 (613)
......+.+|+.+++.+...... ..-|..+.+.|...|+++.|.++|.+.- .++-.|..|.+.|++..|
T Consensus 742 ai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHH
Confidence 33444555555555544443321 1124444455555555555555544321 123334455555555555
Q ss_pred HHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 007194 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364 (613)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 364 (613)
.++-.+. .|.......|-+-..-.-+.|++.+|.+++-.
T Consensus 811 ~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyit 849 (1636)
T KOG3616|consen 811 FKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYIT 849 (1636)
T ss_pred HHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEE
Confidence 4443322 12222333343333444444555555444433
No 108
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.46 E-value=3.5e-05 Score=76.62 Aligned_cols=250 Identities=14% Similarity=0.112 Sum_probs=130.2
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 007194 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217 (613)
Q Consensus 138 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 217 (613)
.+.|++.+|.-.|+..++.. +-+...|--|....+.+++-..|+..+++..+.. +-|....-.|.-.|...|.-.+|+
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHH
Confidence 45566666666666555543 3345566666666666666666666666665542 233445555555566666656666
Q ss_pred HHHHHHhhCCCC----CC--CCHHHHHHHHHHHHhcCChhHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007194 218 DVLAEMNAEVHP----VD--PDHITIGALMKACANAGQVDRAREVYKMI-HKYNIKGTPEVYTIAINCCSQTGDWEFACS 290 (613)
Q Consensus 218 ~~~~~m~~~~~~----~~--~~~~~~~~ll~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 290 (613)
+.++.-...... .. ++...-.. ..+.....+....++|-.+ ...+..+|+.+...|.-.|.-.|.+++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 655554332100 00 00000000 1111122223333444333 333333566666666666666677777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHh--
Q 007194 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG-IISYSSLMGACSNAKNWQKALELYEHMKS-- 367 (613)
Q Consensus 291 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~-- 367 (613)
.|+..+...+. |...|+.|...++...+..+|+..|.+..+.. |+ +.+...|.-.|...|.+++|.+.|-....
T Consensus 452 cf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 452 CFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQ--PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 77766665433 56667777666666666777777776666542 32 33444455566667777776666554432
Q ss_pred -C------CCCCCHHHHHHHHHHHHcCCChhHHH
Q 007194 368 -I------KLKPTVSTMNALITALCDGDQLPKTM 394 (613)
Q Consensus 368 -~------~~~~~~~~~~~li~~~~~~g~~~~A~ 394 (613)
. ...++...|.+|=.++.-.++.+-+.
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 1 11223456666655555556555433
No 109
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.46 E-value=0.0022 Score=63.68 Aligned_cols=423 Identities=11% Similarity=0.107 Sum_probs=249.4
Q ss_pred hhHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC--CCCHHHHHHHHHH
Q 007194 27 EQLHSYNRLI---RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMSV 101 (613)
Q Consensus 27 ~~~~~~~~l~---~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~ 101 (613)
-++.+|+.|+ +...++++++.++++...- |....+....+..-...++++...++|.+-. .-+...|..-|+.
T Consensus 18 ~di~sw~~lire~qt~~~~~~R~~YEq~~~~F--P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~Y 95 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQPIDKVRETYEQLVNVF--PSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSY 95 (656)
T ss_pred ccHHHHHHHHHHHccCCHHHHHHHHHHHhccC--CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 3556788888 4569999999999998653 6666666666666667788999999998743 4467778777765
Q ss_pred HHc-CCChHH----HHHHHHHHH-HcCCCCC-HHHHHHHHHHH---------HHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 007194 102 CAS-SKDSEG----AFQVLRLVQ-EAGLKAD-CKLYTTLITTC---------AKSGKVDAMFEVFHEMVNAGIEPNVHTY 165 (613)
Q Consensus 102 ~~~-~g~~~~----A~~l~~~m~-~~g~~~~-~~~~~~li~~~---------~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 165 (613)
-.+ .++... -.+.|+... +.|+.+- -..|+..+..+ ....+++...++|.++...-+.-=...|
T Consensus 96 VR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW 175 (656)
T KOG1914|consen 96 VRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLW 175 (656)
T ss_pred HHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHH
Confidence 443 233322 334444433 3443332 23455554433 3444667788888888754221111222
Q ss_pred HH------HHHHH-------HhcCCHHHHHHHHHHHHh--CCCCCCHHH---------------HHHHHHHHHccC----
Q 007194 166 GA------LIDGC-------AKAGQVAKAFGAYGIMRS--KNVKPDRVV---------------FNALITACGQSG---- 211 (613)
Q Consensus 166 ~~------li~~~-------~~~g~~~~A~~~~~~m~~--~g~~p~~~~---------------~~~li~~~~~~g---- 211 (613)
+- =|+.. -+...+..|.++++++.. +|+..+..+ |-.+|.-=-.++
T Consensus 176 ~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~ 255 (656)
T KOG1914|consen 176 KDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTL 255 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccc
Confidence 21 11111 123456677777777653 343322222 333333211111
Q ss_pred --CH--HHHHHHHHHHhhCCCCCCCCHHHH-H----HHHHHHHhcCChhH-------HHHHHHHHHhcCCCCCHHHHHHH
Q 007194 212 --AV--DRAFDVLAEMNAEVHPVDPDHITI-G----ALMKACANAGQVDR-------AREVYKMIHKYNIKGTPEVYTIA 275 (613)
Q Consensus 212 --~~--~~A~~~~~~m~~~~~~~~~~~~~~-~----~ll~~~~~~g~~~~-------A~~~~~~~~~~~~~~~~~~~~~l 275 (613)
.. ....-.+++...- .+..|+..-. . ..-+.+...|+..+ +..+++.....-...+..+|..+
T Consensus 256 ~~~~~~~Rv~yayeQ~ll~-l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~ 334 (656)
T KOG1914|consen 256 DGTMLTRRVMYAYEQCLLY-LGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFAL 334 (656)
T ss_pred cccHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 1112223332221 1334443211 1 11233445555443 44444443332222222333333
Q ss_pred HHHHHh---cCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-CHHhHHHHHHHHH
Q 007194 276 INCCSQ---TGDWEFACSVYDDMTKK-GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV-GIISYSSLMGACS 350 (613)
Q Consensus 276 i~~~~~---~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~ 350 (613)
.+.--. ....+.....+++++.. ...|+ .+|...++.-.+..-++.|..+|.+..+.+..+ ++.++++++.-||
T Consensus 335 a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c 413 (656)
T KOG1914|consen 335 ADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC 413 (656)
T ss_pred HhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh
Confidence 222111 12355666667666553 33443 567788888888888999999999999987776 7889999998887
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhhcCCHHHH
Q 007194 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT--ITYSILLVACERKDDVEVG 428 (613)
Q Consensus 351 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a 428 (613)
.++.+-|.++|+--... ...+..--...+.-+...++-..|..+|++....++.|+. ..|..+|.--+.-|++...
T Consensus 414 -skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si 491 (656)
T KOG1914|consen 414 -SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSI 491 (656)
T ss_pred -cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHH
Confidence 57788999999865432 1233444567788888899999999999999988777764 7899999999999999999
Q ss_pred HHHHHHHHHc-C--CCCCHHHHHHHHHHHH
Q 007194 429 LMLLSQAKED-G--VIPNLVMFKCIIGMCS 455 (613)
Q Consensus 429 ~~~~~~~~~~-g--~~p~~~~~~~li~~~~ 455 (613)
..+-+++... . ..+....-..+++.|+
T Consensus 492 ~~lekR~~~af~~~qe~~~~~~~~~v~RY~ 521 (656)
T KOG1914|consen 492 LKLEKRRFTAFPADQEYEGNETALFVDRYG 521 (656)
T ss_pred HHHHHHHHHhcchhhcCCCChHHHHHHHHh
Confidence 9988877642 1 2333333444555543
No 110
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.45 E-value=0.00014 Score=79.33 Aligned_cols=207 Identities=11% Similarity=0.135 Sum_probs=143.8
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHc-CCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 007194 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEA-GLK---ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG 166 (613)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 166 (613)
+...|-..+.-..+.++.++|..++++.... ++. .-...|.++++.-...|.-+...++|++..+.. -.-.+|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 3456777777778888888888888877653 111 123466777777666777777788888877642 2234577
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHh
Q 007194 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246 (613)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~ 246 (613)
.|...|.+.+.+++|.++|+.|.+. +......|...+..+.+..+-+.|..++.+....- +-.-......-.+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhhHHHHHHHHHHHhh
Confidence 7888888888888888888888765 22456678788888888888788888888776531 101123334445555667
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 007194 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302 (613)
Q Consensus 247 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 302 (613)
.|+.+.++.+|+...... +--...|+..|+.-.++|+.+.+..+|++....++.|
T Consensus 1613 ~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred cCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 788888888887776654 4445678888888888888888888888888777665
No 111
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.41 E-value=6.1e-05 Score=74.91 Aligned_cols=252 Identities=12% Similarity=0.087 Sum_probs=184.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCCh
Q 007194 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250 (613)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~ 250 (613)
-+.+.|++.+|.-.|+...... +-+...|.-|-......++-..|+..+.+..+-. +.|....-.|.-.|...|.-
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld---P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD---PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC---CccHHHHHHHHHHHhhhhhH
Confidence 3568999999999999988774 5567789999999999999999999998887631 33566777888889999999
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHH-------H--HHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCH
Q 007194 251 DRAREVYKMIHKYNIKGTPEVYTIA-------I--NCCSQTGDWEFACSVYDDMTK-KGVIPDEVFLSALIDFAGHAGKV 320 (613)
Q Consensus 251 ~~A~~~~~~~~~~~~~~~~~~~~~l-------i--~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~ 320 (613)
..|.+.|+.-.....+ ..|... . ..+.....+....++|-++.. .+..+|......|--.|--.|++
T Consensus 370 ~~Al~~L~~Wi~~~p~---y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPK---YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHHHhCcc---chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 9999999876554311 000000 0 123334445566667766654 44335666666776677788999
Q ss_pred HHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHH
Q 007194 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSD 399 (613)
Q Consensus 321 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~ 399 (613)
++|.+.|+...... +-|..+||.|...++...+.++|+.-|.+..+. +|+ +.++--|.-.|...|.+++|.+.|-.
T Consensus 447 draiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 447 DRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 99999999998876 678899999999999999999999999999885 676 34555677788999999999998876
Q ss_pred HHh---C------CCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 007194 400 MKS---L------GLCPNTITYSILLVACERKDDVEVGLMLL 432 (613)
Q Consensus 400 m~~---~------g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 432 (613)
.+. . +..++...|.+|=.++.-.++.+.+.+..
T Consensus 524 AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 524 ALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 543 2 12235567777777777777766554443
No 112
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.41 E-value=4.5e-05 Score=71.50 Aligned_cols=185 Identities=11% Similarity=0.007 Sum_probs=126.5
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-H--
Q 007194 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC---KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN-V-- 162 (613)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~-- 162 (613)
+.....+..+...+.+.|+++.|...|+.+.... +.+. .++..+...+.+.|++++|...++++.+.. |+ .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~ 106 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDA 106 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCch
Confidence 3456677777888889999999999999887753 2222 466778888889999999999999988753 32 2
Q ss_pred -HHHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCC
Q 007194 163 -HTYGALIDGCAKA--------GQVAKAFGAYGIMRSKNVKPDR-VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 232 (613)
Q Consensus 163 -~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 232 (613)
.++..+...+.+. |+.+.|.+.|+.+... .|+. ..+..+..... . .....
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~------~~~~~-------- 166 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----L------RNRLA-------- 166 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----H------HHHHH--------
Confidence 1455555555544 6788888888888766 3443 22222211100 0 00000
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007194 233 DHITIGALMKACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 298 (613)
.....+...|.+.|++++|...++...+..- +.....+..+...+.+.|++++|...++.+...
T Consensus 167 --~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 --GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred --HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 0112456678899999999999998877531 234578889999999999999999998888765
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.41 E-value=6.6e-05 Score=67.50 Aligned_cols=153 Identities=14% Similarity=0.117 Sum_probs=71.8
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 007194 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179 (613)
Q Consensus 100 ~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 179 (613)
..+...|+-+.+..+....... .+.|....+..+....+.|++..|...|.+..... ++|..+|+.+.-+|.+.|+++
T Consensus 74 ~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~ 151 (257)
T COG5010 74 TALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFD 151 (257)
T ss_pred HHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChh
Confidence 3344444444444444333221 12333344445555555555555555555554433 445555555555555555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 007194 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258 (613)
Q Consensus 180 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 258 (613)
.|..-|.+..+.- .-+....|.+.-.+.-.|+.+.|..++...... -..|..+-..+.......|+++.|..+-.
T Consensus 152 ~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~---~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 152 EARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS---PAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC---CCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 5555555554431 122334444444445555555555555544432 12244444445555555555555555543
No 114
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=0.0052 Score=65.42 Aligned_cols=321 Identities=14% Similarity=0.192 Sum_probs=163.8
Q ss_pred ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 007194 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKG-LLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVC 102 (613)
Q Consensus 24 ~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~ 102 (613)
++.+-..+..+++..+-..+-+++++++.-.+ .++.+.-+..+++-...+. +.....++.+++..-|.. .+...+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa~---~ia~ia 1058 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAP---DIAEIA 1058 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCch---hHHHHH
Confidence 44455666778888999999999999987554 3444544444443322221 112223333333211111 122334
Q ss_pred HcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007194 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182 (613)
Q Consensus 103 ~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 182 (613)
..++-+++|..+|+... .+....+.||. ..++++.|.+.-++.. ...+|+.+..+-.+.|.+.+|+
T Consensus 1059 i~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAi 1124 (1666)
T KOG0985|consen 1059 IENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAI 1124 (1666)
T ss_pred hhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHH
Confidence 45556677777776542 23344444443 2355566655554432 3345677777777777777776
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007194 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (613)
Q Consensus 183 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 262 (613)
+-|-+.. |+..|..+++...+.|.+++-.+.+...+++ .-+|. .-+.|+-+|++.+++.+.+++..
T Consensus 1125 eSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk--~~E~~--id~eLi~AyAkt~rl~elE~fi~---- 1190 (1666)
T KOG0985|consen 1125 ESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKK--VREPY--IDSELIFAYAKTNRLTELEEFIA---- 1190 (1666)
T ss_pred HHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--hcCcc--chHHHHHHHHHhchHHHHHHHhc----
Confidence 6554332 4556667777777777777766666544443 12232 33456666777766665544431
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhH
Q 007194 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342 (613)
Q Consensus 263 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 342 (613)
.|+..-...+.+-|...+.++.|.-+|... .-|..|...+...|++..|.+.-++. .+..||
T Consensus 1191 ---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktW 1252 (1666)
T KOG0985|consen 1191 ---GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA------NSTKTW 1252 (1666)
T ss_pred ---CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHH
Confidence 344444455555566666666555555432 22444445555555555554433321 134455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 007194 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399 (613)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 399 (613)
-.+-.+|...+.+..| +|...++--...-..-++.-|-..|-+++-+.+++.
T Consensus 1253 K~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1253 KEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred HHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 5555555444433322 222222222233334445555555555555544443
No 115
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=0.00036 Score=63.69 Aligned_cols=317 Identities=13% Similarity=0.077 Sum_probs=158.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHH
Q 007194 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA-LIDGCA 173 (613)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~-li~~~~ 173 (613)
+.+.+..+.+..+++.|++++..-.++. +.+......|..+|....++..|-..++++... .|...-|.. -...+-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 3444444455556666666666655543 335555556666666666666666666666544 343333321 123344
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChh
Q 007194 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA--CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251 (613)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 251 (613)
+.+.+..|+++...|... |+...-..-+.+ .-..+++..+..++++...+ .+..+.+.......+.|+++
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e-----n~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE-----NEADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC-----CccchhccchheeeccccHH
Confidence 556666666666655432 222111111111 22345555555555554321 22333333334445666666
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHH
Q 007194 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA-GHAGKVEAAFEILQEA 330 (613)
Q Consensus 252 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~~ 330 (613)
.|.+-|+...+-+--.....||.-+. ..+.++++.|++...++.+.|++-.+ -+++=+..= .....+..-..++..
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HP-ElgIGm~tegiDvrsvgNt~~lh~S- 238 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHP-ELGIGMTTEGIDVRSVGNTLVLHQS- 238 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCC-ccCccceeccCchhcccchHHHHHH-
Confidence 66666666555432223344544333 33455666666666666666554111 010000000 000000000000000
Q ss_pred HHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-C
Q 007194 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI-KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-N 408 (613)
Q Consensus 331 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~ 408 (613)
+ =+..+|.-...+.+.|+.+.|.+-+-.|.-. ....|++|...+.-.- -.+++.+..+-+.-+... .| .
T Consensus 239 ---a---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~--nPfP 309 (459)
T KOG4340|consen 239 ---A---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ--NPFP 309 (459)
T ss_pred ---H---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc--CCCC
Confidence 0 0122343444567889999999888888532 1234666665543222 234455555555555543 34 5
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHH
Q 007194 409 TITYSILLVACERKDDVEVGLMLLSQ 434 (613)
Q Consensus 409 ~~t~~~ll~a~~~~g~~~~a~~~~~~ 434 (613)
..||..++-.||+..-++.|-.++.+
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 68999999999999999888887754
No 116
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.37 E-value=9.7e-05 Score=69.26 Aligned_cols=64 Identities=16% Similarity=0.087 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007194 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN-V---HTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (613)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (613)
....+..+...+...|++++|...|+++... .|+ . .++..+...|.+.|++++|...++++.+.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL 99 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3444555555555666666666666665543 222 1 24455555556666666666666665543
No 117
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=0.0049 Score=61.31 Aligned_cols=380 Identities=14% Similarity=0.088 Sum_probs=221.3
Q ss_pred HHhhhHHHHHHHHHHHhC---CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhH
Q 007194 70 VCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDA 145 (613)
Q Consensus 70 ~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~ 145 (613)
...+.|+++.|+.+|-.. .++|-+.|..-..+|++.|++++|++=-..-.+. .|+ ...|+....++.-.|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHH
Confidence 345678999999999763 3678888988899999999999998866655554 565 5678889999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH------HHHhC---CCCCCHHHHHHHHHHHHcc------
Q 007194 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG------IMRSK---NVKPDRVVFNALITACGQS------ 210 (613)
Q Consensus 146 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~------~m~~~---g~~p~~~~~~~li~~~~~~------ 210 (613)
|+.-|.+-++.. +.|...++-|..++.... .+.+.|. .+... ........|..++..+-+.
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 999999988764 446677788887772110 1111111 11000 0000111233333322111
Q ss_pred ----CCHHHHHHHHHHHh-----hCC-----CCCCC------------C----------HHHHHHHHHHHHhcCChhHHH
Q 007194 211 ----GAVDRAFDVLAEMN-----AEV-----HPVDP------------D----------HITIGALMKACANAGQVDRAR 254 (613)
Q Consensus 211 ----g~~~~A~~~~~~m~-----~~~-----~~~~~------------~----------~~~~~~ll~~~~~~g~~~~A~ 254 (613)
.++..+.-.+.... ..+ .+..| | ..-...+.++..+..+++.|.
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 11111111111000 000 00011 1 011344556666667777777
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-------HHHHHHhcCCHHHHHHHH
Q 007194 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA-------LIDFAGHAGKVEAAFEIL 327 (613)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-------li~~~~~~g~~~~A~~~~ 327 (613)
+-+....... .+..-++....+|...|.+.++...-....+.|.. ...-|+. +..+|.+.++++.|...|
T Consensus 245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 7777776655 34445666677777777777776666665555432 1122222 233555566777777777
Q ss_pred HHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCC
Q 007194 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV-STMNALITALCDGDQLPKTMEVLSDMKSLGLC 406 (613)
Q Consensus 328 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 406 (613)
.+.......|+. ..+....+++.+..+...-.+ |.. .---.=...+.+.|++..|+..+.+++... +
T Consensus 322 ~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P 389 (539)
T KOG0548|consen 322 QKALTEHRTPDL---------LSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-P 389 (539)
T ss_pred HHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-C
Confidence 776554333322 223344455555544443322 322 111122556788999999999999999864 3
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHH-H--HHHHHHHHhhHHHHHHhhhhhhccc
Q 007194 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM-F--KCIIGMCSRRYEKARTLNEHVLSFN 472 (613)
Q Consensus 407 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~-~--~~li~~~~~~~~~a~~~~~~~~~~~ 472 (613)
-|...|+.-.-+|.+.|.+..|..-.+..++. .|+... | ...+--..++|++|.+....-...+
T Consensus 390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 390 EDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 36788999999999999999999988888873 555432 1 1111111235777765544433333
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.31 E-value=0.00016 Score=65.21 Aligned_cols=115 Identities=17% Similarity=0.193 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HcCCC--hhHHHH
Q 007194 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL-CDGDQ--LPKTME 395 (613)
Q Consensus 319 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~-~~~g~--~~~A~~ 395 (613)
+.+++...++...+.+ +.|...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|.+
T Consensus 54 ~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 54 TPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred hHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 3344444444444433 3444555555555555555555555555554433 22344444444432 34444 255555
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007194 396 VLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 396 l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (613)
++++..+. .| +...+..+...+...|++++|...|+++.+
T Consensus 132 ~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 132 MIDKALAL--DANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555543 23 334444444555555555555555555554
No 119
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=0.00039 Score=62.63 Aligned_cols=137 Identities=14% Similarity=0.170 Sum_probs=60.9
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----
Q 007194 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ---- 209 (613)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---- 209 (613)
...|+..|++++|.+...... +......=+..+.+..+++.|.+.+++|.+-. +..|.+.|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhcc
Confidence 344455555555555444311 22222222233344455555555555555431 33344434443332
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 007194 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283 (613)
Q Consensus 210 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 283 (613)
.+.+.+|.-+|++|..+ .+|+..+.+-...++...|++++|..+++...... ..++.+...+|..-...|
T Consensus 186 gek~qdAfyifeE~s~k---~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~G 255 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK---TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLG 255 (299)
T ss_pred chhhhhHHHHHHHHhcc---cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhC
Confidence 23345555555555432 34555555555555555555555555555555444 233334333333333333
No 120
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.30 E-value=0.00022 Score=64.20 Aligned_cols=115 Identities=13% Similarity=0.141 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--HHHHHHH
Q 007194 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA-GHAGK--VEAAFEI 326 (613)
Q Consensus 250 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~--~~~A~~~ 326 (613)
.+++...++...+.+ +.+...|..+...|...|++++|...|++..+.... +...+..+..++ ...|+ .++|.++
T Consensus 55 ~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~ 132 (198)
T PRK10370 55 PEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREM 132 (198)
T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 334444444443333 334444444444444444444444444444443322 333333333321 23333 2444444
Q ss_pred HHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007194 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (613)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (613)
+++..+.+ +.+..++..+...+.+.|++++|...|+++.+
T Consensus 133 l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 133 IDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444433 22334444444444444444444444444443
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.29 E-value=0.00026 Score=63.74 Aligned_cols=155 Identities=17% Similarity=0.092 Sum_probs=76.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 007194 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (613)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 282 (613)
+-..+...|+-+....+...... ..+.|......++....+.|++..|...|.+..... ++|..+|+.+.-+|.+.
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~---~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAI---AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhc---cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 33444444554444444444322 112333344445555555555555555555555544 55555555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHH
Q 007194 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362 (613)
Q Consensus 283 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 362 (613)
|++++|..-|.+..+.... +...++.+.-.+.-.|+.+.|..++......+ .-|..+-..|.-.....|++++|.++-
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 5555555555555543222 22334444444444555555555555554443 234444555555555555555555554
Q ss_pred H
Q 007194 363 E 363 (613)
Q Consensus 363 ~ 363 (613)
.
T Consensus 226 ~ 226 (257)
T COG5010 226 V 226 (257)
T ss_pred c
Confidence 3
No 122
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.25 E-value=6.4e-05 Score=63.97 Aligned_cols=95 Identities=8% Similarity=-0.107 Sum_probs=59.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007194 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (613)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (613)
+......+...|++++|...|+...... +.+...|..+..++...|++++|...|+...... +.+...+..+..++.+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 3344555666666666666666666554 4455666666666666666666666666666553 3455666666666666
Q ss_pred cCCHHHHHHHHHHHHhC
Q 007194 175 AGQVAKAFGAYGIMRSK 191 (613)
Q Consensus 175 ~g~~~~A~~~~~~m~~~ 191 (613)
.|+.++|...|+.....
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666666654
No 123
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.23 E-value=0.00099 Score=72.23 Aligned_cols=239 Identities=8% Similarity=0.030 Sum_probs=137.2
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 007194 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA 167 (613)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 167 (613)
+.+...|..|+..+...+++++|.++.+...+. .|+ ...|-.+...+.+.++.+++..+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~ 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------N 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence 456678888888888888999999888866654 343 33333333356666665555444 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhc
Q 007194 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (613)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~ 247 (613)
++.......++.-+..+...|... .-+...+..+..+|-+.|+.++|..+++++.+-. +-|..+.|.+...|+..
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D---~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD---RDNPEIVKKLATSYEEE 163 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHh
Confidence 233333333443333333444433 2234466677778888888888888888877642 44567777777777777
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007194 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327 (613)
Q Consensus 248 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 327 (613)
++++|.+++.+...+ |...+++..+.+++.++....+. |...+..+ .
T Consensus 164 -dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i----------------~ 210 (906)
T PRK14720 164 -DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRI----------------E 210 (906)
T ss_pred -hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHH----------------H
Confidence 888888777766553 44555666677777776665332 22111111 1
Q ss_pred HHHHHC-CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007194 328 QEAKNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (613)
Q Consensus 328 ~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (613)
+.+... +..--+.++-.+-..|-+.++++++..+++.+.+.. +.|.....-++.+|.
T Consensus 211 ~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 211 RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 112111 111223344445555566666666666666666543 234444555555554
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.22 E-value=0.0053 Score=60.49 Aligned_cols=241 Identities=14% Similarity=0.095 Sum_probs=160.8
Q ss_pred hhhhHHHHHHHHhcCC-HHHHHHHHHHHHH---cCCCCch-HHHHHHHHHHHhhhHHHHHHHHHHHhCC------CCCHH
Q 007194 25 VSEQLHSYNRLIRQGR-ISECIDLLEDMER---KGLLDMD-KVYHARFFNVCKSQKAIKEAFRFFKLVP------NPTLS 93 (613)
Q Consensus 25 ~~~~~~~~~~l~~~g~-~~~A~~l~~~m~~---~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~~ 93 (613)
.+.+-.-.+.|.+.|. .....+.|+++.. .+..++. ..+|- ....++.++...-++++ .|+..
T Consensus 202 ~eADr~Gi~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~yl~THP------lp~~RIa~lr~ra~q~p~~~~~d~~~~~ 275 (484)
T COG4783 202 QEADRIGITTLVRAGYDPQGMPEFFERLADQLRYGGQPPEYLLTHP------LPEERIADLRNRAEQSPPYNKLDSPDFQ 275 (484)
T ss_pred HHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcCCCCChHHhcCC------CchhHHHHHHHHHHhCCCCCCCCCccHH
Confidence 4566677778888884 4555778888874 2222222 11221 12345666666666665 34555
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007194 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (613)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (613)
.+...+.+......-..+..++....+. .-...-|..-+. +...|+++.|+..++.+...- +-|...+......+.
T Consensus 276 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~~-~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~ 351 (484)
T COG4783 276 LARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRALQ-TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILL 351 (484)
T ss_pred HHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHHH-HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 5555555544333333333333222221 112333444443 447889999999999988763 446666777788899
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhH
Q 007194 174 KAGQVAKAFGAYGIMRSKNVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252 (613)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 252 (613)
+.++.++|.+.++++... .|+ ...+-.+..++.+.|+..+|.++++..... .+.|...|..|..+|...|+..+
T Consensus 352 ~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~---~p~dp~~w~~LAqay~~~g~~~~ 426 (484)
T COG4783 352 EANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN---DPEDPNGWDLLAQAYAELGNRAE 426 (484)
T ss_pred HcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc---CCCCchHHHHHHHHHHHhCchHH
Confidence 999999999999999887 565 555667788999999999999999988764 46677899999999999998877
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007194 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 253 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 298 (613)
+..-.. ..|.-.|+++.|...+....+.
T Consensus 427 a~~A~A------------------E~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 427 ALLARA------------------EGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHH------------------HHHHhCCCHHHHHHHHHHHHHh
Confidence 665433 4566678899998888887765
No 125
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.20 E-value=0.0042 Score=64.66 Aligned_cols=242 Identities=16% Similarity=0.199 Sum_probs=132.5
Q ss_pred CCCHHHHHHHHH--HHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC-C--------
Q 007194 89 NPTLSTFNMLMS--VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA-G-------- 157 (613)
Q Consensus 89 ~~~~~~~~~li~--~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g-------- 157 (613)
..|..|-..+++ .|...|+.+.|..-.+.++ +..+|..+..+|.+..+++-|.--+..|... |
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~ 796 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQ 796 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHH
Confidence 345555555543 2555566666655554443 2345666666666665555554444433221 0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHH
Q 007194 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237 (613)
Q Consensus 158 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 237 (613)
-.|+ .+-.-..-.....|..++|..+|++-+.. ..|=..|-..|.+++|+++-+.-.+ +.. ..||
T Consensus 797 q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DR----iHL-r~Ty 861 (1416)
T KOG3617|consen 797 QNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDR----IHL-RNTY 861 (1416)
T ss_pred hCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccc----eeh-hhhH
Confidence 0111 11111222234556666666666665532 2233445556666666666543211 111 1233
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhc----------C---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007194 238 GALMKACANAGQVDRAREVYKMIHKY----------N---------IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~~~~~----------~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 298 (613)
.....-+-..++.+.|++.|++.... + -..|...|.--...+-..|..+.|+.+|....+
T Consensus 862 y~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D- 940 (1416)
T KOG3617|consen 862 YNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD- 940 (1416)
T ss_pred HHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-
Confidence 33344444455555555555432111 0 012334555555666667888888887776543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007194 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (613)
Q Consensus 299 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (613)
|-++++..|-.|+.++|-.+-++ . -|......|.+.|-..|++.+|..+|-+..
T Consensus 941 --------~fs~VrI~C~qGk~~kAa~iA~e---s---gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 --------YFSMVRIKCIQGKTDKAARIAEE---S---GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred --------hhhheeeEeeccCchHHHHHHHh---c---ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 45566677778888888777654 2 366777788999999999999999988765
No 126
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.19 E-value=0.0014 Score=71.07 Aligned_cols=259 Identities=11% Similarity=0.046 Sum_probs=169.7
Q ss_pred CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 007194 122 GLKA-DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH-TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199 (613)
Q Consensus 122 g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 199 (613)
++.| +...+..|+..+...+++++|.++.+...+. .|+.. .|-.+...+.+.++...+..+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--------------- 87 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--------------- 87 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh---------------
Confidence 3444 4567888889888999999999998876655 44433 333444466666665555444
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 007194 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279 (613)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 279 (613)
.++.......++.....+...+.. ...+...+..+..+|-+.|+.++|..+++++.+.+ +.++.+.|.+...|
T Consensus 88 --~~l~~~~~~~~~~~ve~~~~~i~~----~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ 160 (906)
T PRK14720 88 --NLIDSFSQNLKWAIVEHICDKILL----YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSY 160 (906)
T ss_pred --hhhhhcccccchhHHHHHHHHHHh----hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHH
Confidence 233333334444333333334433 23345577788889999999999999999999988 77888999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHH
Q 007194 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359 (613)
Q Consensus 280 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 359 (613)
... ++++|.+++.+.... +...+++..+.+++..+.... +.+...+.
T Consensus 161 ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~---------------- 207 (906)
T PRK14720 161 EEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFFL---------------- 207 (906)
T ss_pred HHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHHH----------------
Confidence 988 999999888877654 555678888889998888764 22332222
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007194 360 ELYEHMKSI-KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 360 ~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (613)
.+.+.+... +...-+.++-.+-..|-..++++++..+++.+.+. .| |.....-++..|. +.+.. ...|++.++
T Consensus 208 ~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~--~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~ 282 (906)
T PRK14720 208 RIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH--DNKNNKAREELIRFYK--EKYKD-HSLLEDYLK 282 (906)
T ss_pred HHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc--CCcchhhHHHHHHHHH--HHccC-cchHHHHHH
Confidence 233333222 23445567777778888999999999999999985 44 5556666665554 33333 444444433
Q ss_pred -cCCCC
Q 007194 438 -DGVIP 442 (613)
Q Consensus 438 -~g~~p 442 (613)
.|+.-
T Consensus 283 ~s~l~~ 288 (906)
T PRK14720 283 MSDIGN 288 (906)
T ss_pred Hhcccc
Confidence 44443
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.17 E-value=0.0032 Score=61.95 Aligned_cols=217 Identities=13% Similarity=0.053 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007194 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292 (613)
Q Consensus 213 ~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 292 (613)
+.++...-+++......-.|+...+...+.+......-..+..++.+..+. .....+.-..-.+...|++++|+..+
T Consensus 253 Ia~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~aa~YG~A~~~~~~~~~d~A~~~l 329 (484)
T COG4783 253 IADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR---GGLAAQYGRALQTYLAGQYDEALKLL 329 (484)
T ss_pred HHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc---cchHHHHHHHHHHHHhcccchHHHHH
Confidence 344444444444322223344444444444333333333333333333221 11233334444556778888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 007194 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372 (613)
Q Consensus 293 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 372 (613)
+.+...-+. |...+....+.+.+.++.++|.+.++.+.... +......-.+..+|.+.|+..+|..+++...... +-
T Consensus 330 ~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~ 406 (484)
T COG4783 330 QPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PE 406 (484)
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CC
Confidence 887776332 56666667778888888888888888887764 2236666777888888888888888888776543 55
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHH
Q 007194 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED--GVIPNLVMFKCI 450 (613)
Q Consensus 373 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~--g~~p~~~~~~~l 450 (613)
|+..|..|..+|...|+..+|....-+ ++...|+++.|...+....+. ...|+..-+...
T Consensus 407 dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~dar 468 (484)
T COG4783 407 DPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQQVKLGFPDWARADAR 468 (484)
T ss_pred CchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 678888888888888888777665544 345678888888888777753 223444445555
Q ss_pred HHH
Q 007194 451 IGM 453 (613)
Q Consensus 451 i~~ 453 (613)
|+.
T Consensus 469 i~~ 471 (484)
T COG4783 469 IDQ 471 (484)
T ss_pred HHH
Confidence 554
No 128
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.17 E-value=0.00013 Score=62.14 Aligned_cols=90 Identities=11% Similarity=-0.024 Sum_probs=41.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh
Q 007194 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390 (613)
Q Consensus 311 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 390 (613)
...+...|++++|...|+...... +.+...+..+..++.+.|++++|...|++..+.. +.+...+..+..++...|++
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCH
Confidence 333444444444444444444433 3344444444444444455555555444444432 23344444444444444455
Q ss_pred hHHHHHHHHHHh
Q 007194 391 PKTMEVLSDMKS 402 (613)
Q Consensus 391 ~~A~~l~~~m~~ 402 (613)
++|...|+...+
T Consensus 109 ~eAi~~~~~Al~ 120 (144)
T PRK15359 109 GLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHH
Confidence 555444444444
No 129
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.13 E-value=0.0015 Score=70.08 Aligned_cols=163 Identities=10% Similarity=0.040 Sum_probs=122.2
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007194 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309 (613)
Q Consensus 230 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 309 (613)
.+.+...+-.|.....+.|..++|..+++...+.. +.+...+..+...+.+.+++++|+..+++....... +......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 34557777788888888899999999998888875 556777888888888899999999988888887554 5666777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 007194 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389 (613)
Q Consensus 310 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 389 (613)
+..++.+.|++++|..+|+++...+ +.+..++..+...+-+.|+.++|...|+...+.. .|....|+.++.-
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~------ 231 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLVD------ 231 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHHH------
Confidence 7778888899999999998888743 4557788888888888899999998888887643 3455666655432
Q ss_pred hhHHHHHHHHHHh
Q 007194 390 LPKTMEVLSDMKS 402 (613)
Q Consensus 390 ~~~A~~l~~~m~~ 402 (613)
...-..+++++.-
T Consensus 232 ~~~~~~~~~~~~~ 244 (694)
T PRK15179 232 LNADLAALRRLGV 244 (694)
T ss_pred HHHHHHHHHHcCc
Confidence 2333455555543
No 130
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.11 E-value=4.5e-06 Score=51.36 Aligned_cols=33 Identities=30% Similarity=0.665 Sum_probs=25.0
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 007194 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (613)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 408 (613)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
No 131
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.10 E-value=0.023 Score=60.79 Aligned_cols=184 Identities=9% Similarity=0.045 Sum_probs=122.7
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 007194 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA 221 (613)
Q Consensus 142 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 221 (613)
+...|...|-+..+.. +.-...|..|...|+...+...|.+.|++..+.+ ..+...+......|++..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 3555666665555432 1124578888888888888888888888887764 4466677788888888888888888843
Q ss_pred HHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007194 222 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301 (613)
Q Consensus 222 ~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (613)
...+.. ....-..-|-...-.|.+.++...|..-|+...+.+ +.|...|..+..+|..+|++..|.++|.+.....
T Consensus 551 ~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-- 626 (1238)
T KOG1127|consen 551 RAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-- 626 (1238)
T ss_pred HHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--
Confidence 332210 000011112223345667788888888888888776 6677888889999999999999999998876653
Q ss_pred CCHHHHHHH--HHHHHhcCCHHHHHHHHHHHHH
Q 007194 302 PDEVFLSAL--IDFAGHAGKVEAAFEILQEAKN 332 (613)
Q Consensus 302 p~~~~~~~l--i~~~~~~g~~~~A~~~~~~~~~ 332 (613)
|+. +|... ...-+..|.+.+|+..+.....
T Consensus 627 P~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 627 PLS-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred cHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 332 22222 2234567888888888877654
No 132
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.09 E-value=0.00042 Score=74.22 Aligned_cols=233 Identities=10% Similarity=0.101 Sum_probs=162.7
Q ss_pred HHHHHHHHHHHcCChhHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007194 129 LYTTLITTCAKSGKVDAM-FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207 (613)
Q Consensus 129 ~~~~li~~~~~~g~~~~a-~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 207 (613)
....+=.+.+..|..++| .+++.+. ..++....+.....+++.-...... ..+.+...+..|....
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~La~i~ 96 (694)
T PRK15179 30 ILDLLEAALAEPGESEEAGRELLQQA------------RQVLERHAAVHKPAAALPELLDYVR-RYPHTELFQVLVARAL 96 (694)
T ss_pred HHhHHHHHhcCcccchhHHHHHHHHH------------HHHHHHhhhhcchHhhHHHHHHHHH-hccccHHHHHHHHHHH
Confidence 333333445555665555 3444333 2344444333334444433333333 3455688888899999
Q ss_pred HccCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 007194 208 GQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286 (613)
Q Consensus 208 ~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 286 (613)
.+.|..++|..+++...+. .|| ......+...+.+.+++++|....++....+ +.+......+..++.+.|+++
T Consensus 97 ~~~g~~~ea~~~l~~~~~~----~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~~ 171 (694)
T PRK15179 97 EAAHRSDEGLAVWRGIHQR----FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIGQSE 171 (694)
T ss_pred HHcCCcHHHHHHHHHHHhh----CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhcchH
Confidence 9999999999999999863 565 5566778889999999999999999999987 778888999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007194 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (613)
Q Consensus 287 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (613)
+|..+|++....+.. +..++..+...+-..|+.++|...|+...+.. .+...-|+.++ +++..-..+++++.
T Consensus 172 ~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~ 243 (694)
T PRK15179 172 QADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDLNADLAALRRLG 243 (694)
T ss_pred HHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHHHHHHHHHHHcC
Confidence 999999999985543 57888888899999999999999999998763 34455665554 33344455566554
Q ss_pred hC----CCCCCHHHHHHHHHHHHcC
Q 007194 367 SI----KLKPTVSTMNALITALCDG 387 (613)
Q Consensus 367 ~~----~~~~~~~~~~~li~~~~~~ 387 (613)
-. |..-.+.+...+|.-|.+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 244 VEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred cccccCCCceeeeeHHHHHHHHhhc
Confidence 32 2222344555555555543
No 133
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=0.0071 Score=54.80 Aligned_cols=84 Identities=13% Similarity=0.132 Sum_probs=39.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChh
Q 007194 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391 (613)
Q Consensus 316 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 391 (613)
+..+.+-|.+.++.|.+-. +..|.+.|..++.+ .+.+.+|.-+|++|.+. ..|+..+.|.+..++...|+++
T Consensus 149 k~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~e 224 (299)
T KOG3081|consen 149 KMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYE 224 (299)
T ss_pred HHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHH
Confidence 3344444444444444332 33344434333332 23345555555555442 1355555555555555555555
Q ss_pred HHHHHHHHHHhC
Q 007194 392 KTMEVLSDMKSL 403 (613)
Q Consensus 392 ~A~~l~~~m~~~ 403 (613)
+|..++++....
T Consensus 225 eAe~lL~eaL~k 236 (299)
T KOG3081|consen 225 EAESLLEEALDK 236 (299)
T ss_pred HHHHHHHHHHhc
Confidence 555555555543
No 134
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.05 E-value=6.3e-06 Score=50.67 Aligned_cols=33 Identities=42% Similarity=0.743 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 007194 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196 (613)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 196 (613)
+||++|++|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.04 E-value=0.00024 Score=59.92 Aligned_cols=87 Identities=11% Similarity=0.154 Sum_probs=33.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHH
Q 007194 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393 (613)
Q Consensus 314 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 393 (613)
+...|++++|...++.+...+ +.+...+..+...|.+.|++++|...+++..+.+ +.+...+..+...|...|++++|
T Consensus 27 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A 104 (135)
T TIGR02552 27 LYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEPESA 104 (135)
T ss_pred HHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCHHHH
Confidence 333344444444444433332 2233333344444444444444444444433322 22233333333344444444444
Q ss_pred HHHHHHHHh
Q 007194 394 MEVLSDMKS 402 (613)
Q Consensus 394 ~~l~~~m~~ 402 (613)
+..|+...+
T Consensus 105 ~~~~~~al~ 113 (135)
T TIGR02552 105 LKALDLAIE 113 (135)
T ss_pred HHHHHHHHH
Confidence 444444333
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.01 E-value=0.00032 Score=59.15 Aligned_cols=94 Identities=15% Similarity=0.165 Sum_probs=45.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 007194 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (613)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 209 (613)
...+...+...|++++|.+.|+.+...+ +.+...|..+...+.+.|++++|...|++....+ +.+...+..+...+..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 3344444445555555555555544432 2344445555555555555555555555544432 2233444444445555
Q ss_pred cCCHHHHHHHHHHHhh
Q 007194 210 SGAVDRAFDVLAEMNA 225 (613)
Q Consensus 210 ~g~~~~A~~~~~~m~~ 225 (613)
.|+.++|.+.|+...+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555554443
No 137
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.98 E-value=9.5e-06 Score=49.49 Aligned_cols=32 Identities=28% Similarity=0.485 Sum_probs=16.9
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 007194 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (613)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 407 (613)
+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
No 138
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.93 E-value=1.6e-05 Score=48.46 Aligned_cols=33 Identities=45% Similarity=0.794 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 007194 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195 (613)
Q Consensus 163 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 195 (613)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355666666666666666666666666555554
No 139
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=0.017 Score=52.05 Aligned_cols=187 Identities=16% Similarity=0.143 Sum_probs=106.8
Q ss_pred CChHHHHHHHHHHHH---cC-CCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007194 106 KDSEGAFQVLRLVQE---AG-LKADCK-LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180 (613)
Q Consensus 106 g~~~~A~~l~~~m~~---~g-~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 180 (613)
.+.++.++++..+.. .| ..++.. .|..++-+....|+.+.|...++.+...- +.+..+--.-.-.+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 355666666666552 23 344443 34555666667777777777777766542 2121111111112334677777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 007194 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260 (613)
Q Consensus 181 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 260 (613)
|.++++.+.+.+ +.|.+++---+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~---F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK---FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 777777777665 445555554444444555555666666665542 4566777777777777777777777777776
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHC
Q 007194 261 HKYNIKGTPEVYTIAINCCSQTG---DWEFACSVYDDMTKK 298 (613)
Q Consensus 261 ~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 298 (613)
.-.. |.++..+..+...+.-.| +.+-|.+.|.+..+.
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 6553 444444445544443333 345566666666554
No 140
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=0.017 Score=52.03 Aligned_cols=86 Identities=16% Similarity=0.107 Sum_probs=40.1
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007194 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325 (613)
Q Consensus 246 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 325 (613)
..|++++|.++++.+.+.+ +.|.+++-.-+...-..|+.-+|++-+....+. +..|...|.-+-..|...|++++|.-
T Consensus 98 a~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~f 175 (289)
T KOG3060|consen 98 ATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAF 175 (289)
T ss_pred HhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHH
Confidence 3445555555555554444 334444444444444444444444444444443 22244455555555555555555555
Q ss_pred HHHHHHHC
Q 007194 326 ILQEAKNQ 333 (613)
Q Consensus 326 ~~~~~~~~ 333 (613)
.++++.-.
T Consensus 176 ClEE~ll~ 183 (289)
T KOG3060|consen 176 CLEELLLI 183 (289)
T ss_pred HHHHHHHc
Confidence 55544443
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.87 E-value=0.00083 Score=66.55 Aligned_cols=125 Identities=10% Similarity=0.076 Sum_probs=97.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007194 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (613)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (613)
.-.++++.+...++++.|..+|+++.+.. |++ ...++..+...++-.+|.+++.+..+.. +.+......-...+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34456666777888999999999988764 553 3447777777888888998888887653 446667777777888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 007194 174 KAGQVAKAFGAYGIMRSKNVKPDR-VVFNALITACGQSGAVDRAFDVLAEMNA 225 (613)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (613)
+.++.+.|+.+.+++... .|+. .+|..|..+|...|+++.|+..++.+..
T Consensus 246 ~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred hcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 899999999999998876 4554 4899999999999999999988887753
No 142
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.86 E-value=0.058 Score=57.29 Aligned_cols=224 Identities=10% Similarity=0.006 Sum_probs=137.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChHHH
Q 007194 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGA 111 (613)
Q Consensus 35 l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 111 (613)
.+..+++..|++..+++.++- |+......+-+-...+.|..++|...++... ..|..|...+-..|...++.++|
T Consensus 19 ~ld~~qfkkal~~~~kllkk~--Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKH--PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 457888889999888888875 4433332222223456677788887776532 44777888888888888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHH
Q 007194 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ----------VAKA 181 (613)
Q Consensus 112 ~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A 181 (613)
..++++.... -|+......+..+|.+.+++.+-.++--+|-+. ++.+.+.+=++++.+.+.-. ..-|
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 8888888765 566777777778888877765533332222221 23455555556666654321 2356
Q ss_pred HHHHHHHHhCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 007194 182 FGAYGIMRSKN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260 (613)
Q Consensus 182 ~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 260 (613)
.+.++.+.+.+ ---+..-...-...+...|.+++|..++..-... .-...+...-+--+..+...+++.+..++-.++
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~-~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAE-KLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-hccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 66666666553 1112222222234455667788888887432222 112333444455667778888888888888888
Q ss_pred HhcC
Q 007194 261 HKYN 264 (613)
Q Consensus 261 ~~~~ 264 (613)
...+
T Consensus 253 l~k~ 256 (932)
T KOG2053|consen 253 LEKG 256 (932)
T ss_pred HHhC
Confidence 7776
No 143
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.81 E-value=0.07 Score=56.70 Aligned_cols=405 Identities=12% Similarity=0.079 Sum_probs=222.7
Q ss_pred cccChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC--CCCHHHHHHH
Q 007194 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNML 98 (613)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l 98 (613)
+|+....-+...=.+.+.|+.++|..+++.....+ +.+..+...+..++...++.++|..+|++.. .|+......+
T Consensus 39 ~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~l 116 (932)
T KOG2053|consen 39 HPNALYAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHL 116 (932)
T ss_pred CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHH
Confidence 44444444444444559999999999999887766 4466666677788899999999999999876 4666667777
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHCC-CCCCHHHHHH
Q 007194 99 MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK----------VDAMFEVFHEMVNAG-IEPNVHTYGA 167 (613)
Q Consensus 99 i~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g-~~~~~~~~~~ 167 (613)
..+|++.+.+.+-.++--++-+. .+...+.+=++++.+...-. ..-|.+.++.+.+.+ -.-+..-.-.
T Consensus 117 FmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~L 195 (932)
T KOG2053|consen 117 FMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIIL 195 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHH
Confidence 78888888887655554444442 34455555556666554321 234566677776543 1111111112
Q ss_pred HHHHHHhcCCHHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHh
Q 007194 168 LIDGCAKAGQVAKAFGAYG-IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246 (613)
Q Consensus 168 li~~~~~~g~~~~A~~~~~-~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~ 246 (613)
-....-..|.+++|++++. ...+.-..-+...-+--+..+...+++.+..++-.++...+ +|. |...++.+.+
T Consensus 196 yl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~----~Dd--y~~~~~sv~k 269 (932)
T KOG2053|consen 196 YLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG----NDD--YKIYTDSVFK 269 (932)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC----Ccc--hHHHHHHHHH
Confidence 2233456788999999994 44444333445555567788888999999999988888752 332 3333332221
Q ss_pred ----------------cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHCCC-CCCHH---
Q 007194 247 ----------------AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD-MTKKGV-IPDEV--- 305 (613)
Q Consensus 247 ----------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~~~-~p~~~--- 305 (613)
.+..+...+..++.........--++--+..-+-.-|+.+++...|-+ .-..-+ ..|..
T Consensus 270 lLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg~kpcc~~Dl~~yl 349 (932)
T KOG2053|consen 270 LLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKKFGDKPCCAIDLNHYL 349 (932)
T ss_pred HHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHHhCCCcHhHhhHHHhh
Confidence 122233333333332221111112222233333456888886655532 211100 00111
Q ss_pred ------HHHHHHHHHH------------------------hcCC-----HHHHHHHHHHHH---HCC------CCcCH--
Q 007194 306 ------FLSALIDFAG------------------------HAGK-----VEAAFEILQEAK---NQG------ISVGI-- 339 (613)
Q Consensus 306 ------~~~~li~~~~------------------------~~g~-----~~~A~~~~~~~~---~~~------~~~~~-- 339 (613)
-...++..+. ..|. .+.-..++.+.. .+| .-|+.
T Consensus 350 ~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~ 429 (932)
T KOG2053|consen 350 GHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYS 429 (932)
T ss_pred ccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccc
Confidence 1112222211 1121 122222222221 122 11222
Q ss_pred -------HhHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH
Q 007194 340 -------ISYSSLMGACSNAKNWQ---KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409 (613)
Q Consensus 340 -------~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 409 (613)
-+-+.|++.|-+.++.. +|+-+++...... +.|..+=-.+|+.|+--|-+..|.++|..+.-..+.-|.
T Consensus 430 ~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DT 508 (932)
T KOG2053|consen 430 FGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDT 508 (932)
T ss_pred cHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhcc
Confidence 13467778888888755 4444555444432 344555566888888889999999999887655555555
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 007194 410 ITYSILLVACERKDDVEVGLMLLSQAK 436 (613)
Q Consensus 410 ~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (613)
..|.. ..-+...|++..+...+....
T Consensus 509 lgh~~-~~~~~t~g~~~~~s~~~~~~l 534 (932)
T KOG2053|consen 509 LGHLI-FRRAETSGRSSFASNTFNEHL 534 (932)
T ss_pred chHHH-HHHHHhcccchhHHHHHHHHH
Confidence 44432 233445556666655555433
No 144
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.81 E-value=0.00033 Score=69.63 Aligned_cols=119 Identities=16% Similarity=0.075 Sum_probs=57.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHH
Q 007194 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK--GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343 (613)
Q Consensus 266 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 343 (613)
+.+......+++.+....+.+++..++.+.... ....-..|..++++.|.+.|..+.++.++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 334444444555555555555555555554433 111111233355555555555555555555555555555555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007194 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384 (613)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 384 (613)
.||+.+.+.|++..|.++...|...+...+..|+..-+.+|
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~ 183 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSC 183 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 55555555555555555555554444334444443333333
No 145
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.75 E-value=0.0011 Score=65.68 Aligned_cols=125 Identities=16% Similarity=0.108 Sum_probs=85.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHH
Q 007194 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244 (613)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~ 244 (613)
-.+|+..+...++++.|..+|+++.+. .|+. ...+++.+...++-.+|.+++++.... .+.+......-...+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~--~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~---~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER--DPEV--AVLLARVYLLMNEEVEAIRLLNEALKE---NPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc--CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh---CCCCHHHHHHHHHHH
Confidence 344555556677788888888888766 3443 334666676777777788877777653 233455555556667
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007194 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (613)
Q Consensus 245 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 297 (613)
.+.++.+.|..+.+++.+.. +.+-.+|..|..+|.+.|+++.|+..++.+.-
T Consensus 245 l~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 77788888888888777764 44556788888888888888888877776653
No 146
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.73 E-value=0.00069 Score=67.39 Aligned_cols=124 Identities=15% Similarity=0.137 Sum_probs=76.9
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHH
Q 007194 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273 (613)
Q Consensus 194 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 273 (613)
+.+......+++.+....+++.+..++.+..........-..|..++++.|.+.|..+.+..+++.=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 44555566666666666666666666666654322221222344566777777777777777777666677777777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007194 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317 (613)
Q Consensus 274 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 317 (613)
.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777777777666655555555555555555444
No 147
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.71 E-value=0.0017 Score=55.38 Aligned_cols=20 Identities=20% Similarity=0.248 Sum_probs=7.9
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 007194 243 ACANAGQVDRAREVYKMIHK 262 (613)
Q Consensus 243 ~~~~~g~~~~A~~~~~~~~~ 262 (613)
.+...|++++|...|+.+..
T Consensus 57 ~~~~~g~~~~A~~~l~~~~~ 76 (145)
T PF09976_consen 57 AAYEQGDYDEAKAALEKALA 76 (145)
T ss_pred HHHHCCCHHHHHHHHHHHHh
Confidence 33333444444444443333
No 148
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.71 E-value=3.7e-05 Score=45.62 Aligned_cols=29 Identities=34% Similarity=0.671 Sum_probs=15.8
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 007194 376 TMNALITALCDGDQLPKTMEVLSDMKSLG 404 (613)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g 404 (613)
+||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 149
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.69 E-value=0.0035 Score=53.49 Aligned_cols=85 Identities=20% Similarity=0.212 Sum_probs=35.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhc
Q 007194 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDR--VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (613)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~ 247 (613)
..+...|++++|...|+........|+. .....|...+...|++++|+..++..... ......+......|.+.
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~----~~~~~~~~~~Gdi~~~~ 131 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE----AFKALAAELLGDIYLAQ 131 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc----chHHHHHHHHHHHHHHC
Confidence 3444445555555555544443211111 11222334444445555555554432211 12223333444455555
Q ss_pred CChhHHHHHHH
Q 007194 248 GQVDRAREVYK 258 (613)
Q Consensus 248 g~~~~A~~~~~ 258 (613)
|+.++|...|+
T Consensus 132 g~~~~A~~~y~ 142 (145)
T PF09976_consen 132 GDYDEARAAYQ 142 (145)
T ss_pred CCHHHHHHHHH
Confidence 55555555444
No 150
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.67 E-value=5e-05 Score=45.06 Aligned_cols=29 Identities=38% Similarity=0.673 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007194 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (613)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 192 (613)
+|++++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 151
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.66 E-value=0.00077 Score=52.40 Aligned_cols=78 Identities=18% Similarity=0.399 Sum_probs=53.0
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcC--------ChhHHHHHHHHHHHCCCCCCHHHHHH
Q 007194 97 MLMSVCASSKDSEGAFQVLRLVQEAGL-KADCKLYTTLITTCAKSG--------KVDAMFEVFHEMVNAGIEPNVHTYGA 167 (613)
Q Consensus 97 ~li~~~~~~g~~~~A~~l~~~m~~~g~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~g~~~~~~~~~~ 167 (613)
..|..|...+++.....+|+.+++.|+ .|++.+|+.++...++.. ++...+.+|+.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 345556666888888888888888888 788888888887776653 22345566666666666666666666
Q ss_pred HHHHHHh
Q 007194 168 LIDGCAK 174 (613)
Q Consensus 168 li~~~~~ 174 (613)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 6665543
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.57 E-value=0.0031 Score=51.57 Aligned_cols=19 Identities=16% Similarity=0.097 Sum_probs=7.4
Q ss_pred HHHHccCCHHHHHHHHHHH
Q 007194 205 TACGQSGAVDRAFDVLAEM 223 (613)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m 223 (613)
.++.+.|+++.|.+.|+.+
T Consensus 47 ~~~~~~~~~~~A~~~~~~~ 65 (119)
T TIGR02795 47 EAYYAQGKYADAAKAFLAV 65 (119)
T ss_pred HHHHhhccHHHHHHHHHHH
Confidence 3333333333333333333
No 153
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.56 E-value=0.0017 Score=50.20 Aligned_cols=90 Identities=20% Similarity=0.211 Sum_probs=42.7
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007194 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (613)
Q Consensus 98 li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 177 (613)
+...+...|++++|...++...+.. +.+...+..+...+...+++++|.+.|+...... +.+..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 3344444555555555555554432 2223444444555555555555555555544432 2233344444455555555
Q ss_pred HHHHHHHHHHHH
Q 007194 178 VAKAFGAYGIMR 189 (613)
Q Consensus 178 ~~~A~~~~~~m~ 189 (613)
.+.|...+....
T Consensus 84 ~~~a~~~~~~~~ 95 (100)
T cd00189 84 YEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
No 154
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.53 E-value=0.0014 Score=50.99 Aligned_cols=79 Identities=18% Similarity=0.380 Sum_probs=63.8
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHHHHH
Q 007194 131 TTLITTCAKSGKVDAMFEVFHEMVNAGI-EPNVHTYGALIDGCAKAG--------QVAKAFGAYGIMRSKNVKPDRVVFN 201 (613)
Q Consensus 131 ~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~~ 201 (613)
...|.-+...+++.....+|+.+++.|+ .|+..+|+.++.+-++.. .+-..+.+|+.|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4455666667999999999999999998 899999999998887653 2446778888888888999999999
Q ss_pred HHHHHHHc
Q 007194 202 ALITACGQ 209 (613)
Q Consensus 202 ~li~~~~~ 209 (613)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88877654
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.41 E-value=0.0072 Score=49.35 Aligned_cols=100 Identities=13% Similarity=0.031 Sum_probs=51.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC--CCCHHHHHHHHH
Q 007194 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAIN 277 (613)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~ 277 (613)
+..+...+.+.|++++|.+.|..+.....+-......+..+...+.+.|+++.|...|+.+....- +....++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334445555566666666666665543111011122344455556666666666666665554321 112344555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC
Q 007194 278 CCSQTGDWEFACSVYDDMTKKG 299 (613)
Q Consensus 278 ~~~~~g~~~~A~~~~~~m~~~~ 299 (613)
.+.+.|++++|...++++.+..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHC
Confidence 5666666666666666665543
No 156
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.40 E-value=0.0038 Score=48.16 Aligned_cols=8 Identities=25% Similarity=0.405 Sum_probs=2.8
Q ss_pred CHHHHHHH
Q 007194 212 AVDRAFDV 219 (613)
Q Consensus 212 ~~~~A~~~ 219 (613)
++++|...
T Consensus 15 ~~~~A~~~ 22 (100)
T cd00189 15 DYDEALEY 22 (100)
T ss_pred cHHHHHHH
Confidence 33333333
No 157
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.39 E-value=0.0028 Score=55.90 Aligned_cols=105 Identities=20% Similarity=0.253 Sum_probs=63.6
Q ss_pred CCCHHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 007194 89 NPTLSTFNMLMSVCAS-----SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH 163 (613)
Q Consensus 89 ~~~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 163 (613)
..|-.+|..+++.+.+ .|..+=....+..|.+.|+..|..+|+.|++.+=+ |.+- -..+|+.+-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F--------- 112 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF--------- 112 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh---------
Confidence 3455556666655553 35566666677777778888888888887777643 2221 111111111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 007194 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212 (613)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 212 (613)
.- --.+.+-|++++++|...|+-||..++..+++.+++.+.
T Consensus 113 ------~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 ------MH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ------cc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11 123456677778888878888888888888777776654
No 158
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.35 E-value=0.0038 Score=52.53 Aligned_cols=92 Identities=15% Similarity=0.108 Sum_probs=57.1
Q ss_pred hhHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhC---CCCCHHHHHHHHHHH
Q 007194 27 EQLHSYNR-LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVC 102 (613)
Q Consensus 27 ~~~~~~~~-l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~ 102 (613)
..++++.. |.+.|++++|..+|+-+..-+ |++..++..++-.+...|++.+|+..|... .+.|+..+-.+...+
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 33444433 336777777777777777666 666666666666666666677776666652 234555566666666
Q ss_pred HcCCChHHHHHHHHHHHH
Q 007194 103 ASSKDSEGAFQVLRLVQE 120 (613)
Q Consensus 103 ~~~g~~~~A~~l~~~m~~ 120 (613)
...|+.+.|...|+....
T Consensus 114 L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 114 LACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666665554
No 159
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.33 E-value=0.12 Score=53.25 Aligned_cols=333 Identities=12% Similarity=0.083 Sum_probs=175.4
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHc-CCCC--------CHHHHHHHHHHHHHcCChhHHH
Q 007194 77 IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA-GLKA--------DCKLYTTLITTCAKSGKVDAMF 147 (613)
Q Consensus 77 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~~--------~~~~~~~li~~~~~~g~~~~a~ 147 (613)
+++|.++.+. .|.+..|..+.......-.++.|...|-+...- |++. +...-.+=+. +--|.+++|+
T Consensus 679 ledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeae 754 (1189)
T KOG2041|consen 679 LEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAE 754 (1189)
T ss_pred hHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhh
Confidence 5666666655 455677888777766666777777776554321 2110 0001111122 2248899999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 007194 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (613)
Q Consensus 148 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 226 (613)
++|-++.++. ..|..+.+.|++-.+.++++.--.. .-..-...|+.+...+.....+++|.+.|..-..
T Consensus 755 k~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~- 824 (1189)
T KOG2041|consen 755 KLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD- 824 (1189)
T ss_pred hhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-
Confidence 9998876542 2466777888887777776532110 0011235677788888877788888887765321
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 007194 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306 (613)
Q Consensus 227 ~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 306 (613)
....+.++.+..++++-+.+-..+. .+....-.|.+++...|.-++|.+.|-+... |
T Consensus 825 ----------~e~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p---- 881 (1189)
T KOG2041|consen 825 ----------TENQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P---- 881 (1189)
T ss_pred ----------hHhHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhccC----c----
Confidence 1124455555555555444443332 2334555666667777777766665543211 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHh--------------HHHHHHHHHhcCCHHHHHHHHHHHHhC----
Q 007194 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS--------------YSSLMGACSNAKNWQKALELYEHMKSI---- 368 (613)
Q Consensus 307 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------------~~~li~~~~~~g~~~~A~~~~~~m~~~---- 368 (613)
...+..|...+++.+|.++-+...- |.+.+ ...-|..+.+.|+.-.|.+++.+|.+.
T Consensus 882 -kaAv~tCv~LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K 956 (1189)
T KOG2041|consen 882 -KAAVHTCVELNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEK 956 (1189)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhc
Confidence 1234455555666666555443211 11111 112345667777776777777666432
Q ss_pred CCCCCHH----HHHH-HHHHH----------HcCCChhHHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHhhcCC
Q 007194 369 KLKPTVS----TMNA-LITAL----------CDGDQLPKTMEVLSDMKSL-------GLCPN--TITYSILLVACERKDD 424 (613)
Q Consensus 369 ~~~~~~~----~~~~-li~~~----------~~~g~~~~A~~l~~~m~~~-------g~~p~--~~t~~~ll~a~~~~g~ 424 (613)
+.++-.. ...+ |+.-+ -++|..++|..+++.-... +...- ...|..+..--...|.
T Consensus 957 ~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~ 1036 (1189)
T KOG2041|consen 957 YVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGR 1036 (1189)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhch
Confidence 2222111 1111 11111 1356777777665543211 11111 2233344444556778
Q ss_pred HHHHHHHHHHHHH-cCCCCCHHHHHHHH
Q 007194 425 VEVGLMLLSQAKE-DGVIPNLVMFKCII 451 (613)
Q Consensus 425 ~~~a~~~~~~~~~-~g~~p~~~~~~~li 451 (613)
++.|.+.--.+.+ ..+-|...+|+.|.
T Consensus 1037 v~~Al~Tal~L~DYEd~lpP~eiySllA 1064 (1189)
T KOG2041|consen 1037 VKDALQTALILSDYEDFLPPAEIYSLLA 1064 (1189)
T ss_pred HHHHHHHHhhhccHhhcCCHHHHHHHHH
Confidence 8888776555544 24667777776553
No 160
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.33 E-value=0.0053 Score=54.18 Aligned_cols=105 Identities=16% Similarity=0.278 Sum_probs=59.3
Q ss_pred CCCHHHHHHHHHHHHh-----cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 007194 231 DPDHITIGALMKACAN-----AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305 (613)
Q Consensus 231 ~~~~~~~~~ll~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 305 (613)
..|..+|..++..|.+ .|.++-....+..|.+.|+..|..+|+.|++.+=+ |.+- |...
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n~ 107 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRNF 107 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cccH
Confidence 3456666666666654 35666677777778888888888888887776654 2221 1111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCC
Q 007194 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354 (613)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 354 (613)
+.++..-| ..+-+-|++++++|...|+-||..++..|++.+.+.+.
T Consensus 108 -fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 108 -FQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -HHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11111011 12334556666666666666666666666666655443
No 161
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.28 E-value=0.0066 Score=58.14 Aligned_cols=129 Identities=14% Similarity=0.207 Sum_probs=62.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHH-HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 007194 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA-CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277 (613)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 277 (613)
+|..+++..-+.+..+.|.++|.+.... ..+.. .+|...... |...++.+.|.++|+...+. ++.+...|...++
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~-~~~~~--~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKD-KRCTY--HVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCS-T--HHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcC-CCCCH--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 4555555555555555555555555532 11222 222222222 22234444466666555544 3445555555556
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007194 278 CCSQTGDWEFACSVYDDMTKKGVIPDE----VFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (613)
Q Consensus 278 ~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 333 (613)
.+.+.++.+.|..+|++.... + |.. ..|...++.=.+.|+++...++.+++.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~-l-~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS-L-PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT-S-SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHh-c-CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 556666666666666655543 2 222 25555555555566666666666555543
No 162
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.27 E-value=0.0074 Score=60.07 Aligned_cols=86 Identities=12% Similarity=0.008 Sum_probs=43.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 007194 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394 (613)
Q Consensus 315 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 394 (613)
...|++++|+..|.++.+.. +.+...|..+..+|.+.|++++|...+++..+.. +.+...|..+..+|...|++++|+
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHH
Confidence 34455555555555555443 3344445555555555555555555555554432 223444555555555555555555
Q ss_pred HHHHHHHh
Q 007194 395 EVLSDMKS 402 (613)
Q Consensus 395 ~l~~~m~~ 402 (613)
..|++..+
T Consensus 91 ~~~~~al~ 98 (356)
T PLN03088 91 AALEKGAS 98 (356)
T ss_pred HHHHHHHH
Confidence 55555554
No 163
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.26 E-value=0.0081 Score=57.53 Aligned_cols=130 Identities=12% Similarity=0.060 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHH
Q 007194 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA-CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 242 (613)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~ 242 (613)
+|..+++..-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+. +..+...|...++
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~---f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK---FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH---HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHH
Confidence 45555555555555555555555555332 1122222222222 22234444455555555542 2344445555555
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007194 243 ACANAGQVDRAREVYKMIHKYNIKGT---PEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 243 ~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 298 (613)
.+.+.++.+.|..+|++.... +.++ ...|...+..=.+.|+.+.+.++.+++.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 555555555555555555443 2221 236666666666666666666666666553
No 164
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.22 E-value=0.01 Score=59.06 Aligned_cols=89 Identities=13% Similarity=0.067 Sum_probs=57.0
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007194 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180 (613)
Q Consensus 101 ~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 180 (613)
.+...|++++|++.|+...+.. +.+...|..+..+|.+.|++++|+..+++..... +.+...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 3445566777777777666654 4455566666666667777777777776666553 3345566666666667777777
Q ss_pred HHHHHHHHHhC
Q 007194 181 AFGAYGIMRSK 191 (613)
Q Consensus 181 A~~~~~~m~~~ 191 (613)
|+..|++....
T Consensus 89 A~~~~~~al~l 99 (356)
T PLN03088 89 AKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHh
Confidence 77777666654
No 165
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.19 E-value=0.0014 Score=47.44 Aligned_cols=62 Identities=21% Similarity=0.288 Sum_probs=45.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC--CCCHHHHHHH
Q 007194 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNML 98 (613)
Q Consensus 35 l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l 98 (613)
|++.|++++|+++|+++.... |.+..+...++.++...|++++|.++++++. .|+...|..+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 467889999999999988887 7777777778888888888888888888775 3443344333
No 166
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.17 E-value=0.11 Score=48.56 Aligned_cols=177 Identities=8% Similarity=-0.030 Sum_probs=101.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007194 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVY---TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (613)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 316 (613)
....+.+.|++++|.+.|+.+.... +.+...- -.++.+|.+.+++++|...+++..+..+.-...-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 3444556677777777777776653 2233332 34566677777777777777777765443222333333333321
Q ss_pred --cC---------------C---HHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 007194 317 --AG---------------K---VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376 (613)
Q Consensus 317 --~g---------------~---~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 376 (613)
.+ + ...|+..|+.+ +.-|-...-..+|...+..+... . ...
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~l---------------i~~yP~S~ya~~A~~rl~~l~~~---l-a~~ 177 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKL---------------VRGYPNSQYTTDATKRLVFLKDR---L-AKY 177 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHH---------------HHHCcCChhHHHHHHHHHHHHHH---H-HHH
Confidence 00 1 12333334433 33333344455555554444321 0 111
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 007194 377 MNALITALCDGDQLPKTMEVLSDMKSL--GLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436 (613)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (613)
--.+..-|.+.|.+..|..-|+.+.+. +.+........+..+|...|..++|..+...+.
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 124556688888898899888888873 223345566777888999999998888776554
No 167
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.15 E-value=0.016 Score=48.77 Aligned_cols=94 Identities=11% Similarity=0.032 Sum_probs=56.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007194 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (613)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (613)
.-.+...+...|++++|..+|+.+.... +-+..-|-.|.-++-..|++++|+..|....... +-|...+-.+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 3344444556666666666666666543 3344455556666666666666666666666554 3455566666666666
Q ss_pred cCCHHHHHHHHHHHHh
Q 007194 175 AGQVAKAFGAYGIMRS 190 (613)
Q Consensus 175 ~g~~~~A~~~~~~m~~ 190 (613)
.|+.+.|.+.|+..+.
T Consensus 116 lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 116 CDNVCYAIKALKAVVR 131 (157)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666665554
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.11 E-value=0.03 Score=49.32 Aligned_cols=61 Identities=13% Similarity=0.030 Sum_probs=26.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007194 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGT--PEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (613)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 297 (613)
+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344444444555555555544443221111 23344444444444444444444444443
No 169
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.09 E-value=0.036 Score=57.79 Aligned_cols=62 Identities=15% Similarity=0.065 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007194 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 374 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (613)
...|.++.......|++++|...++++.+. .|+...|..+...+...|+.++|...+++...
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344444444444455666666666665552 35555555555556666666666666655554
No 170
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.05 E-value=0.0014 Score=49.81 Aligned_cols=20 Identities=15% Similarity=0.120 Sum_probs=9.2
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 007194 168 LIDGCAKAGQVAKAFGAYGI 187 (613)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~ 187 (613)
+..+|.+.|++++|..++++
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 44444444444444444444
No 171
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.03 E-value=0.53 Score=48.84 Aligned_cols=320 Identities=11% Similarity=0.047 Sum_probs=176.9
Q ss_pred hHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHHcCChhHHHHH
Q 007194 74 QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA----DCKLYTTLITTCAKSGKVDAMFEV 149 (613)
Q Consensus 74 ~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~----~~~~~~~li~~~~~~g~~~~a~~~ 149 (613)
-|.+++|.++|-.+..+|. .|..+.+.|++-...++++.= |-.. -...|+.+...++....+++|.+.
T Consensus 747 ~g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred hcchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4779999999987776654 355667777877777665421 1111 134677788888888888888887
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC
Q 007194 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 229 (613)
Q Consensus 150 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 229 (613)
|..-.. -...+.++.+..++++-..+-+.+.+ |....-.+..++.+.|.-++|.+.|-+..
T Consensus 819 Y~~~~~---------~e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s----- 879 (1189)
T KOG2041|consen 819 YSYCGD---------TENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRS----- 879 (1189)
T ss_pred HHhccc---------hHhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhcc-----
Confidence 765421 12345666666666665555544432 34455566677777777777777665432
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHH----------HHHHHHHHHHhcCCHHHHHHHHHHHHH--
Q 007194 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE----------VYTIAINCCSQTGDWEFACSVYDDMTK-- 297 (613)
Q Consensus 230 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----------~~~~li~~~~~~g~~~~A~~~~~~m~~-- 297 (613)
.|. ..+..|...+++.+|.++-+...-..+..-.. -.---|..+.+.|++-+|-+++.+|.+
T Consensus 880 -~pk-----aAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e 953 (1189)
T KOG2041|consen 880 -LPK-----AAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAERE 953 (1189)
T ss_pred -CcH-----HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHH
Confidence 121 23445566666666666554332111100000 011235667788888888888888754
Q ss_pred --CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 007194 298 --KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375 (613)
Q Consensus 298 --~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 375 (613)
++.+|-..--..++.+.. ..+..++.+-.+....+|...+... +...|-..++.++.+..-. .....
T Consensus 954 ~~K~~p~lr~KklYVL~AlL-vE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr---gAEAy 1022 (1189)
T KOG2041|consen 954 QEKYVPYLRLKKLYVLGALL-VENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR---GAEAY 1022 (1189)
T ss_pred hhccCCHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh---hHHHH
Confidence 344332221111222221 1233445555555555554333221 2234445555555554432 12334
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007194 376 TMNALITALCDGDQLPKTMEVLSDMKS-LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (613)
.|-.|..-....|..+.|++.--.+.+ ..+-|....|+.+.-+.+....+--.-+.|-++..
T Consensus 1023 HFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~ 1085 (1189)
T KOG2041|consen 1023 HFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEA 1085 (1189)
T ss_pred HHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Confidence 445555556678888988876554443 34677788888777666665555555555544443
No 172
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.03 E-value=0.035 Score=48.95 Aligned_cols=93 Identities=11% Similarity=0.088 Sum_probs=66.7
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 007194 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD--CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (613)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 168 (613)
....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 344667777778888999999999988876542222 3577788888888899999999888887753 3355666777
Q ss_pred HHHHHhcCCHHHHHHH
Q 007194 169 IDGCAKAGQVAKAFGA 184 (613)
Q Consensus 169 i~~~~~~g~~~~A~~~ 184 (613)
...|...|+...+..-
T Consensus 113 g~~~~~~g~~~~a~~~ 128 (172)
T PRK02603 113 AVIYHKRGEKAEEAGD 128 (172)
T ss_pred HHHHHHcCChHhHhhC
Confidence 7777777775554433
No 173
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.03 E-value=0.0014 Score=49.88 Aligned_cols=19 Identities=21% Similarity=0.373 Sum_probs=7.6
Q ss_pred HHHHHHhcCCHHHHHHHHH
Q 007194 345 LMGACSNAKNWQKALELYE 363 (613)
Q Consensus 345 li~~~~~~g~~~~A~~~~~ 363 (613)
+..+|.+.|++++|..+++
T Consensus 31 la~~~~~~~~y~~A~~~~~ 49 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQ 49 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHH
Confidence 3333444444444444443
No 174
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.98 E-value=0.053 Score=56.55 Aligned_cols=146 Identities=10% Similarity=-0.078 Sum_probs=101.9
Q ss_pred cCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHH
Q 007194 263 YNIKGTPEVYTIAINCCSQTG-----DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG--------KVEAAFEILQE 329 (613)
Q Consensus 263 ~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~ 329 (613)
...+.+...|...+.+..... ..+.|..+|++..+..+. ....+..+..++.... +...+.+....
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 344677888998888865432 367899999999887543 3455555444443221 12333344443
Q ss_pred HHHC-CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 007194 330 AKNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (613)
Q Consensus 330 ~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 408 (613)
.... ..+.+...+..+.-.....|++++|...+++..+.+ |+...|..+...+...|+.++|.+.+++... +.|.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~ 485 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPG 485 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCC
Confidence 3332 234456777777777777899999999999998865 7888999999999999999999999999877 4676
Q ss_pred HHHHH
Q 007194 409 TITYS 413 (613)
Q Consensus 409 ~~t~~ 413 (613)
..||.
T Consensus 486 ~pt~~ 490 (517)
T PRK10153 486 ENTLY 490 (517)
T ss_pred CchHH
Confidence 66654
No 175
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.96 E-value=0.16 Score=47.44 Aligned_cols=58 Identities=10% Similarity=0.019 Sum_probs=38.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 007194 344 SLMGACSNAKNWQKALELYEHMKSI--KLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (613)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 401 (613)
.+...|.+.|.+..|..-|+.+.+. +.+........++.+|.+.|..++|.+....+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 4556677788888888877777753 112233455567777888888887777665543
No 176
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.96 E-value=0.03 Score=49.16 Aligned_cols=80 Identities=14% Similarity=0.119 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 007194 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP--DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (613)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 347 (613)
..|..+...+...|++++|...|++.......| ...++..+...+...|+.++|...+....... +....++..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 344555555555666666666666655442221 12345555555566666666666666555442 222334444444
Q ss_pred HHH
Q 007194 348 ACS 350 (613)
Q Consensus 348 ~~~ 350 (613)
.+.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 444
No 177
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.94 E-value=0.017 Score=50.72 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007194 236 TIGALMKACANAGQVDRAREVYKMIHK 262 (613)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~ 262 (613)
++..+...|...|++++|...++....
T Consensus 74 ~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 74 ILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444455555444444443
No 178
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.94 E-value=0.012 Score=54.38 Aligned_cols=98 Identities=17% Similarity=0.148 Sum_probs=55.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 007194 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394 (613)
Q Consensus 315 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 394 (613)
.+.+++.+|+..|.+.++.. +-|.+.|..=..+|++.|.++.|++-.+.....+ +.-..+|..|-.+|...|++++|+
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHH
Confidence 34556666666666666553 4455555555666666666666666555555432 112345666666666666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHH
Q 007194 395 EVLSDMKSLGLCPNTITYSILL 416 (613)
Q Consensus 395 ~l~~~m~~~g~~p~~~t~~~ll 416 (613)
+.|++.++ +.|+..+|-.=|
T Consensus 170 ~aykKaLe--ldP~Ne~~K~nL 189 (304)
T KOG0553|consen 170 EAYKKALE--LDPDNESYKSNL 189 (304)
T ss_pred HHHHhhhc--cCCCcHHHHHHH
Confidence 66666555 456655554433
No 179
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.91 E-value=0.01 Score=54.91 Aligned_cols=81 Identities=14% Similarity=0.089 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 007194 75 KAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151 (613)
Q Consensus 75 ~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 151 (613)
+++.+|+..|.+.. +.|.+.|..-..+|.+.|.++.|++-.+..+..+ +.-..+|..|-.+|...|++++|.+.|+
T Consensus 95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~~ayk 173 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAIEAYK 173 (304)
T ss_pred hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHHHHHH
Confidence 44444444444321 3344444444445555555555555444444332 1123345555555555555555555555
Q ss_pred HHHHC
Q 007194 152 EMVNA 156 (613)
Q Consensus 152 ~m~~~ 156 (613)
+.++.
T Consensus 174 KaLel 178 (304)
T KOG0553|consen 174 KALEL 178 (304)
T ss_pred hhhcc
Confidence 54443
No 180
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.80 E-value=0.0052 Score=44.36 Aligned_cols=51 Identities=18% Similarity=0.160 Sum_probs=21.3
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007194 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (613)
Q Consensus 140 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (613)
.|++++|.+.|+++.... +-+...+..+..+|.+.|++++|..+++++...
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344444444444443332 223334444444444444444444444444433
No 181
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.80 E-value=0.061 Score=43.61 Aligned_cols=91 Identities=19% Similarity=0.086 Sum_probs=42.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhc
Q 007194 170 DGCAKAGQVAKAFGAYGIMRSKNVKPD--RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (613)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~ 247 (613)
.++-..|+.++|+.+|++....|.... ...+..+.+.+...|++++|..++++......+-+-+......+..++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 344455666666666666665554333 223334445555566666666666555543100000111112222344555
Q ss_pred CChhHHHHHHHHH
Q 007194 248 GQVDRAREVYKMI 260 (613)
Q Consensus 248 g~~~~A~~~~~~~ 260 (613)
|+.++|...+-..
T Consensus 89 gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 89 GRPKEALEWLLEA 101 (120)
T ss_pred CCHHHHHHHHHHH
Confidence 5665555555433
No 182
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.78 E-value=0.26 Score=47.41 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007194 272 YTIAINCCSQTGDWEFACSVYDDMTK 297 (613)
Q Consensus 272 ~~~li~~~~~~g~~~~A~~~~~~m~~ 297 (613)
+..+...+.+.|++++|.++|+++..
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34445555555555555555555544
No 183
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.78 E-value=0.079 Score=42.96 Aligned_cols=55 Identities=22% Similarity=0.238 Sum_probs=24.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007194 278 CCSQTGDWEFACSVYDDMTKKGVIPD--EVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (613)
Q Consensus 278 ~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 332 (613)
++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..+++....
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444555555555555544443322 11222333344444555555555544443
No 184
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.52 Score=45.92 Aligned_cols=176 Identities=14% Similarity=0.079 Sum_probs=104.3
Q ss_pred CCHHHHHHHH-HHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007194 232 PDHITIGALM-KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC--CSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308 (613)
Q Consensus 232 ~~~~~~~~ll-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 308 (613)
|...++..+- .++...|+.++|..+--.+.+.+- . ..+...+++ +.-.++.+.|...|.+.+..+ |+...-.
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~-~--n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk 240 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA-T--NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSK 240 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc-c--hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHH
Confidence 4444444332 455667788888777766666542 2 223333333 334567778888888777654 3433211
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHH
Q 007194 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI---KLKPTVSTMNALITALC 385 (613)
Q Consensus 309 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~li~~~~ 385 (613)
..-...+.+..+...| +-..+.|++..|.+.+.+.... +.+|+...|........
T Consensus 241 ----------~~~~~~k~le~~k~~g------------N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~ 298 (486)
T KOG0550|consen 241 ----------SASMMPKKLEVKKERG------------NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNI 298 (486)
T ss_pred ----------hHhhhHHHHHHHHhhh------------hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhc
Confidence 1112222233333333 2345788888888888877653 34556667777777788
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCHHHHHHH---HHHHhhcCCHHHHHHHHHHHHHc
Q 007194 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSIL---LVACERKDDVEVGLMLLSQAKED 438 (613)
Q Consensus 386 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l---l~a~~~~g~~~~a~~~~~~~~~~ 438 (613)
+.|+.++|+.--++... .|..-.-.+ ..++.-.+++++|.+-+++..+.
T Consensus 299 rLgrl~eaisdc~~Al~----iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 299 RLGRLREAISDCNEALK----IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred ccCCchhhhhhhhhhhh----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88999998888877764 333322222 23455577888888888887764
No 185
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.51 Score=43.05 Aligned_cols=133 Identities=8% Similarity=0.013 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-----
Q 007194 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL----- 203 (613)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l----- 203 (613)
+.+.++..+.-.+.+.-...++.+.++..-+.++.....|.+.-.+.|+.+.|...|++..+..-..|..+++.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 345566666666777777777777777655556777777777777888888888888766554333444444333
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 007194 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264 (613)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 264 (613)
...|.-.+++..|...+.++...+ +.|....|.-.-+..-.|+..+|.+.++.|.+..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D---~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD---PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhheecccchHHHHHHHhhccccC---CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 334555667777777777766532 2333443333323333577788888888877753
No 186
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.059 Score=50.26 Aligned_cols=100 Identities=12% Similarity=0.044 Sum_probs=45.3
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCHHHH
Q 007194 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA---GQVAKAFGAYGIMRSKNVKPDRVVF 200 (613)
Q Consensus 124 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~~~ 200 (613)
+-|...|-.|...|...|+.+.|..-|.+..+.. .+|...+..+..++... ....++..+|+++.... +-|+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 3344555555555555555555555555544432 23344444443333222 12334455555554442 2233333
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhh
Q 007194 201 NALITACGQSGAVDRAFDVLAEMNA 225 (613)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~~~~m~~ 225 (613)
..|...+...|++.+|...++.|.+
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh
Confidence 3344445555555555555555544
No 187
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.62 E-value=0.16 Score=48.95 Aligned_cols=128 Identities=13% Similarity=0.163 Sum_probs=73.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhc-CCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHH
Q 007194 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA-KNWQKALELYEHMKS----IKLKPT--VSTMNALITA 383 (613)
Q Consensus 311 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~----~~~~~~--~~~~~~li~~ 383 (613)
+..|...|++..|-..+.. +...|.+. |++++|.+.|++..+ .+ .+. ..++..+...
T Consensus 101 ~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHH
Confidence 3455666666666554443 44456566 778888887776643 12 111 2456667788
Q ss_pred HHcCCChhHHHHHHHHHHhCCCC-----CCHH-HHHHHHHHHhhcCCHHHHHHHHHHHHHc--CCCCC--HHHHHHHHHH
Q 007194 384 LCDGDQLPKTMEVLSDMKSLGLC-----PNTI-TYSILLVACERKDDVEVGLMLLSQAKED--GVIPN--LVMFKCIIGM 453 (613)
Q Consensus 384 ~~~~g~~~~A~~l~~~m~~~g~~-----p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~--g~~p~--~~~~~~li~~ 453 (613)
+.+.|++++|.++|++....-.. ++.. .|...+-.+...|++..|...+++.... ++..+ ......||++
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A 244 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEA 244 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Confidence 88999999999999987764222 2222 2333344566678999999999887743 33333 3344455555
Q ss_pred H
Q 007194 454 C 454 (613)
Q Consensus 454 ~ 454 (613)
|
T Consensus 245 ~ 245 (282)
T PF14938_consen 245 Y 245 (282)
T ss_dssp H
T ss_pred H
Confidence 4
No 188
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.12 Score=48.28 Aligned_cols=100 Identities=16% Similarity=0.062 Sum_probs=53.6
Q ss_pred CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC---ChhHHHHHHHHHHhCCCCCCH-HH
Q 007194 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD---QLPKTMEVLSDMKSLGLCPNT-IT 411 (613)
Q Consensus 336 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~-~t 411 (613)
+-|...|-.|...|...|+...|..-|.+..+.. .+|...+..+..++.... ...++..+|+++... .|+. .+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHH
Confidence 4455666666666666666666666666555432 244444444444433221 234566666666553 3433 33
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 007194 412 YSILLVACERKDDVEVGLMLLSQAKED 438 (613)
Q Consensus 412 ~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (613)
...|..++...|++.+|...|+.|.+.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 444445566666666666666666653
No 189
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.57 E-value=0.01 Score=42.39 Aligned_cols=54 Identities=9% Similarity=0.094 Sum_probs=25.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007194 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (613)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (613)
.+.+.|++++|...|+++.+.. +-+...|..+...+.+.|++++|...|+++.+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555555555554433 12344444445555555555555555555443
No 190
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.49 E-value=0.28 Score=50.31 Aligned_cols=43 Identities=30% Similarity=0.329 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHh
Q 007194 40 RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86 (613)
Q Consensus 40 ~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 86 (613)
++-+-+.-++++.++|.+|... ++...+.-.|.+.+|.++|.+
T Consensus 615 ~~L~li~EL~~~k~rge~P~~i----LlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 615 RYLELISELEERKKRGETPNDL----LLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHHHHHHhcCCCchHH----HHHHHHHhhhhHHHHHHHHHH
Confidence 3334444455566666544433 233445556667777766654
No 191
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.47 E-value=0.012 Score=41.89 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=19.4
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007194 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (613)
Q Consensus 138 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (613)
.+.|++++|.+.|+++.+.. +-+...+..+..++.+.|++++|...|+++
T Consensus 8 ~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 8 YQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444444444444444332 113333334444444444444444444443
No 192
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.47 E-value=0.013 Score=42.30 Aligned_cols=61 Identities=16% Similarity=0.141 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 007194 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG-DWEFACSVYDDMT 296 (613)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~ 296 (613)
.+|..+...+...|++++|+..|++..+.+ +.+...|..+..+|.+.| ++++|++.+++..
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 344444455555555555555555555543 334445555555555555 4555555555443
No 193
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.33 E-value=0.59 Score=42.40 Aligned_cols=168 Identities=11% Similarity=0.055 Sum_probs=84.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007194 241 MKACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (613)
Q Consensus 241 l~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 318 (613)
...+...|++++|...|+.+...-. +-...+.-.++.++.+.|+++.|...+++..+.-+......+...+.+.+...
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 3345566677777777766665421 11234455566667777777777777777665432211122222222222111
Q ss_pred -------------CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007194 319 -------------KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (613)
Q Consensus 319 -------------~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (613)
...+|.. .+..++.-|-......+|...+..+.+. . ...--.+..-|.
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~---------------~~~~li~~yP~S~y~~~A~~~l~~l~~~---l-a~~e~~ia~~Y~ 152 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIE---------------EFEELIKRYPNSEYAEEAKKRLAELRNR---L-AEHELYIARFYY 152 (203)
T ss_dssp HHHHHH-TT---HHHHHHHH---------------HHHHHHHH-TTSTTHHHHHHHHHHHHHH---H-HHHHHHHHHHHH
T ss_pred hCccchhcccChHHHHHHHH---------------HHHHHHHHCcCchHHHHHHHHHHHHHHH---H-HHHHHHHHHHHH
Confidence 1112222 3444455555555566666555555421 0 111123556678
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhhcCCHHHHH
Q 007194 386 DGDQLPKTMEVLSDMKSLGLCPNT----ITYSILLVACERKDDVEVGL 429 (613)
Q Consensus 386 ~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~ 429 (613)
+.|.+..|..-++.+++. -|+. .....++.++.+.|..+.+.
T Consensus 153 ~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 153 KRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp CTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 888888888888887774 3432 34566667777777776443
No 194
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.33 E-value=1.2 Score=43.46 Aligned_cols=109 Identities=12% Similarity=0.103 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 007194 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350 (613)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 350 (613)
+.+..|.-+...|+...|.++-.+. . .||...|-..+.+++..+++++-.++-.. +-++.-|-.++..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 3444455566667766666665443 1 35777777777777777777766554321 123466777777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 007194 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399 (613)
Q Consensus 351 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 399 (613)
+.|...+|..+...+. +..-+..|.+.|++.+|.+.-.+
T Consensus 249 ~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777777776665521 24455666777777777665443
No 195
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.31 E-value=0.02 Score=41.32 Aligned_cols=61 Identities=18% Similarity=0.209 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHH
Q 007194 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMV 154 (613)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~ 154 (613)
..|..+...+...|++++|+..|.+..+.. +.+...|..+..+|...| ++++|++.+++..
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 344444455555555555555555555443 223444444445555554 3555555554443
No 196
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.28 E-value=0.87 Score=41.60 Aligned_cols=142 Identities=13% Similarity=0.137 Sum_probs=94.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHH----
Q 007194 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM---- 346 (613)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li---- 346 (613)
+.+.++..+.-.|.+.-...++.+..+.....+....+.+.+.-.+.|+.+.|...|+...+..-..|..+.+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4566677777777788888888888877666677777888888888888888888888776654344444444333
Q ss_pred -HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 007194 347 -GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415 (613)
Q Consensus 347 -~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 415 (613)
..|.-.+++-.|...|.++...+ ..|+...|.-.-+..-.|+..+|++.++.|... .|...+-.++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 34555677777888887777654 344555554433444467788888888888774 4555544433
No 197
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.19 E-value=0.15 Score=52.25 Aligned_cols=214 Identities=14% Similarity=0.159 Sum_probs=107.7
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHH---------HHHHHCCCCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhCCC
Q 007194 125 ADCKLYTTLITTCAKSGKVDAMFEVF---------HEMVNAGIEPNVHTYGALIDGCAKAGQV--AKAFGAYGIMRSKNV 193 (613)
Q Consensus 125 ~~~~~~~~li~~~~~~g~~~~a~~~~---------~~m~~~g~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~ 193 (613)
|-.+.+.+=+..|...|.+++|.++- +.+-.. ..+..-++..=.+|.+-.+. -+.+.-+++++++|-
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge 631 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGE 631 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCC
Confidence 33444455556667777777775431 111111 11223344455566665543 344555677788887
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHH------------HHHH
Q 007194 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY------------KMIH 261 (613)
Q Consensus 194 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~------------~~~~ 261 (613)
.|+... +...++-.|.+.+|-++|.+--.+ +..+.+|.....++.|.+++ ++-.
T Consensus 632 ~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~e-----------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA 697 (1081)
T KOG1538|consen 632 TPNDLL---LADVFAYQGKFHEAAKLFKRSGHE-----------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRA 697 (1081)
T ss_pred CchHHH---HHHHHHhhhhHHHHHHHHHHcCch-----------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 787764 334566678888888888764321 12233344444444444333 2211
Q ss_pred h--cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-----H-HHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007194 262 K--YNIKGTPEVYTIAINCCSQTGDWEFACSVYDD-----M-TKKGV---IPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (613)
Q Consensus 262 ~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-----m-~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 330 (613)
+ +++... .+-...+...|+.++|..+.-+ | .+-+- ..+..+...+...+-+...+..|.++|..|
T Consensus 698 ~WAr~~keP----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~ 773 (1081)
T KOG1538|consen 698 DWARNIKEP----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKM 773 (1081)
T ss_pred HHhhhcCCc----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHh
Confidence 1 111111 1223344455665555544321 1 11111 113334444444445556666677777665
Q ss_pred HHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007194 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (613)
Q Consensus 331 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (613)
-. ..++++.....+++.+|..+-+...+
T Consensus 774 gD---------~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 774 GD---------LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred cc---------HHHHhhheeecccchHhHhhhhhCcc
Confidence 32 23556667777777777777766654
No 198
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.13 E-value=0.1 Score=49.24 Aligned_cols=60 Identities=22% Similarity=0.136 Sum_probs=25.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007194 239 ALMKACANAGQVDRAREVYKMIHKYN--IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 298 (613)
.+...|...|++++|...|+.+.+.. -+....++-.+...+...|+.++|...|+.+.+.
T Consensus 185 ~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 185 WLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34444444444444444444444321 0111233333344444445555555555544443
No 199
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.13 E-value=0.26 Score=41.92 Aligned_cols=70 Identities=19% Similarity=0.264 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHH
Q 007194 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT-----KKGVIPDEVF 306 (613)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~~~~p~~~~ 306 (613)
+...++..+...|+++.|..+.+.+...+ +.+...|..+|.+|...|+..+|.++|+.+. +.|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34445556666777777777777776665 5566677777777777777777777776653 2466665544
No 200
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.10 E-value=0.13 Score=49.79 Aligned_cols=264 Identities=15% Similarity=0.068 Sum_probs=139.6
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHHcCChhHHHHHHHHHH--H--CCC-CCCHHHHHHHHHHH
Q 007194 102 CASSKDSEGAFQVLRLVQEAGLKADCK----LYTTLITTCAKSGKVDAMFEVFHEMV--N--AGI-EPNVHTYGALIDGC 172 (613)
Q Consensus 102 ~~~~g~~~~A~~l~~~m~~~g~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~--~--~g~-~~~~~~~~~li~~~ 172 (613)
+++.|+....+.+|+...+.| ..|.. +|..|-++|.-.+++++|++.+..=+ . .|- .-...+...|...+
T Consensus 27 Lck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 778888888888888888877 33433 45666677777788888887654311 0 000 00111222233344
Q ss_pred HhcCCHHHHHHHHHH----HHhCCCC-CCHHHHHHHHHHHHccCC--------------------HHHHHHHHHHHhhCC
Q 007194 173 AKAGQVAKAFGAYGI----MRSKNVK-PDRVVFNALITACGQSGA--------------------VDRAFDVLAEMNAEV 227 (613)
Q Consensus 173 ~~~g~~~~A~~~~~~----m~~~g~~-p~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~~~~ 227 (613)
--.|.+++|+-.-.+ ..+.|-+ .....+-.+...|...|+ ++.|.++|.+-.+-.
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 445556555433211 1111100 012233345555544433 223333433211100
Q ss_pred --CC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh----cCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--
Q 007194 228 --HP-VDPDHITIGALMKACANAGQVDRAREVYKMIHK----YNI-KGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-- 297 (613)
Q Consensus 228 --~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-- 297 (613)
.+ --.--..|..|.+.|.-.|+++.|+...+.-.. .|- .....++..+.+++.-.|+++.|.+.|+.-..
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 00 000112344555555566778887776643322 121 11224567777788888888888888776432
Q ss_pred --CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007194 298 --KGV-IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ-----GISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (613)
Q Consensus 298 --~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (613)
.|- .....+..+|...|.-..++.+|+.++.+-..- ...-....+.+|..+|...|..++|..+.+.-.
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 221 113345566677777777778888777653321 112235567778888888888888777665543
No 201
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.08 E-value=0.11 Score=48.85 Aligned_cols=98 Identities=12% Similarity=0.068 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHH
Q 007194 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAGQVAKAFGAYGIMRSKN--VKPDRVVF 200 (613)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~ 200 (613)
...|...+..+.+.|++++|...|+.+.+. .|+. .++-.+...|...|++++|...|+.+...- -+.....+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 344665555556667888888888887765 3432 456667777788888888888888877541 01123344
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhC
Q 007194 201 NALITACGQSGAVDRAFDVLAEMNAE 226 (613)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~~~~m~~~ 226 (613)
-.+...+...|+.++|.++|+.+...
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44556667778888888888877764
No 202
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.03 E-value=0.11 Score=42.61 Aligned_cols=52 Identities=13% Similarity=0.214 Sum_probs=29.9
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHH
Q 007194 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244 (613)
Q Consensus 192 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~ 244 (613)
...|+..+..+++.+|+..+++..|+++.+..... .+++-+..+|..|+.-.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~-Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK-YPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHH
Confidence 34556666666666666666666666666665544 34555555565555433
No 203
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.00 E-value=0.98 Score=40.93 Aligned_cols=46 Identities=9% Similarity=0.063 Sum_probs=25.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHcCCChhH
Q 007194 345 LMGACSNAKNWQKALELYEHMKSIKLKPTV----STMNALITALCDGDQLPK 392 (613)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~ 392 (613)
+...|.+.|.+..|..-++.+.+. -|+. ...-.++.+|.+.|..+.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHH
Confidence 455566677777777666666653 2332 233455666666666553
No 204
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.99 E-value=1.7 Score=42.31 Aligned_cols=107 Identities=10% Similarity=0.019 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007194 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (613)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (613)
+.+..|.-+...|+...|.++-.+. . .|+...|..-+.+++..++|++-.++... +..++-|-..+..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 4455566667778888777775554 2 46788888888999999998877765332 244577888888888
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 007194 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432 (613)
Q Consensus 386 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 432 (613)
+.|+..+|..+...+ ++ ..-+..|.+.|++.+|.+.-
T Consensus 249 ~~~~~~eA~~yI~k~-----~~-----~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----PD-----EERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HCCCHHHHHHHHHhC-----Ch-----HHHHHHHHHCCCHHHHHHHH
Confidence 889888888887662 22 23344556777777765543
No 205
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=1.8 Score=42.42 Aligned_cols=258 Identities=12% Similarity=0.028 Sum_probs=132.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChH
Q 007194 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSE 109 (613)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 109 (613)
|...+..++.+|+..+....... |.+..++..-+..+...+++++|.--.++-. +.......-.-+.+...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHH
Confidence 44567888899999999888877 6666655554444555566666654443221 111111111122222222222
Q ss_pred HHHHHHH---------------HHHHcC-CCCCHHHHHHHH-HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-
Q 007194 110 GAFQVLR---------------LVQEAG-LKADCKLYTTLI-TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG- 171 (613)
Q Consensus 110 ~A~~l~~---------------~m~~~g-~~~~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~- 171 (613)
+|.+.++ ...... -+|...++..+- .++.-.|+.++|.+.--...+.. ....+...+++
T Consensus 135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~ 211 (486)
T KOG0550|consen 135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGL 211 (486)
T ss_pred HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhccc
Confidence 2222222 111111 123334444332 34456677888877766665532 12233333433
Q ss_pred -HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-------------HHHHHHccCCHHHHHHHHHHHhhCC-CCCCCCHHH
Q 007194 172 -CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA-------------LITACGQSGAVDRAFDVLAEMNAEV-HPVDPDHIT 236 (613)
Q Consensus 172 -~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-------------li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~ 236 (613)
+--.++.+.|..-|.+.+.. .|+-..--. -.+-..+.|++..|.+.|.+.+... ....|+...
T Consensus 212 ~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nakl 289 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKL 289 (486)
T ss_pred ccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHH
Confidence 23456778888888877765 344322111 1122345677777777777765421 122334445
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007194 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 298 (613)
|........+.|+..+|+.--+...+.+- .-+..+-.-..++.-.++|++|.+-|+...+.
T Consensus 290 Y~nra~v~~rLgrl~eaisdc~~Al~iD~-syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 290 YGNRALVNIRLGRLREAISDCNEALKIDS-SYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHhHhhhcccCCchhhhhhhhhhhhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555666677777777777776666541 11112222233444456677777777665544
No 206
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.96 E-value=0.15 Score=41.84 Aligned_cols=82 Identities=17% Similarity=0.263 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHh-------------hCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh-c
Q 007194 198 VVFNALITACGQSGAVDRAFDVLAEMN-------------AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK-Y 263 (613)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~-------------~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~ 263 (613)
.++.++|.++++.|+++....+++..- ..+.++.|+..+..+++.+|+..|++..|.++.+.+.+ .
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 344455555555555555544443321 11224455566666666666666666666666655433 2
Q ss_pred CCCCCHHHHHHHHHHH
Q 007194 264 NIKGTPEVYTIAINCC 279 (613)
Q Consensus 264 ~~~~~~~~~~~li~~~ 279 (613)
+++.+..+|..|+.-.
T Consensus 83 ~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 83 PIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 3444455555555433
No 207
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.94 E-value=0.091 Score=50.76 Aligned_cols=266 Identities=18% Similarity=0.075 Sum_probs=147.5
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHH--HhC--CCC-CCHHHHHHHHH
Q 007194 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVH----TYGALIDGCAKAGQVAKAFGAYGIM--RSK--NVK-PDRVVFNALIT 205 (613)
Q Consensus 135 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m--~~~--g~~-p~~~~~~~li~ 205 (613)
.-+|+.|+......+|+..++.|.+ |.. +|..|..+|.-.+++++|++....= ..+ |-+ -...+...|-+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 3468999999999999999998833 433 4666777888888899998764321 110 100 01111222233
Q ss_pred HHHccCCHHHHHHHHHHH----hhCCCCCCCCHHHHHHHHHHHHhcCC--------------------hhHHHHHHHHHH
Q 007194 206 ACGQSGAVDRAFDVLAEM----NAEVHPVDPDHITIGALMKACANAGQ--------------------VDRAREVYKMIH 261 (613)
Q Consensus 206 ~~~~~g~~~~A~~~~~~m----~~~~~~~~~~~~~~~~ll~~~~~~g~--------------------~~~A~~~~~~~~ 261 (613)
.+--.|.+++|.-.-.+- .+-+..+ .....+-.+.+.|...|+ ++.|.++|.+=.
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv-~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRV-LESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHH-hhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 333345555554321111 0000000 112234445555554432 233444443211
Q ss_pred ----hcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007194 262 ----KYNI-KGTPEVYTIAINCCSQTGDWEFACSVYDDMT----KKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (613)
Q Consensus 262 ----~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 331 (613)
+.|- -.....|..|.+.|.-.|+++.|+...+.-+ +-|-. .....++.+..++.-.|+++.|.+.++...
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 1110 0012356666777777788888877665432 12211 123456667777777888888888777643
Q ss_pred H----CC-CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh----C-CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 007194 332 N----QG-ISVGIISYSSLMGACSNAKNWQKALELYEHMKS----I-KLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (613)
Q Consensus 332 ~----~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 401 (613)
. .| -.....+..+|...|.-..++++|+..+.+-.. . +..-...++.+|..+|...|..++|+.+.+.-+
T Consensus 263 ~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 2 22 223455677788888888888888887765322 1 111234567778888888888888887776654
Q ss_pred h
Q 007194 402 S 402 (613)
Q Consensus 402 ~ 402 (613)
+
T Consensus 343 ~ 343 (639)
T KOG1130|consen 343 R 343 (639)
T ss_pred H
Confidence 4
No 208
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.91 E-value=0.049 Score=46.46 Aligned_cols=57 Identities=16% Similarity=0.273 Sum_probs=28.9
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007194 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (613)
Q Consensus 131 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (613)
..++..+...|++++|.++...+.... +-|...|..+|.+|...|+...|.+.|+++
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 334444555555555555555555443 334555555555555555555555555554
No 209
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.82 E-value=1.1 Score=38.76 Aligned_cols=101 Identities=18% Similarity=0.131 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC-CCCCCHHHHH
Q 007194 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH-PVDPDHITIG 238 (613)
Q Consensus 160 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~~ 238 (613)
|++.---.|..+..+.|+..+|...|.+...--..-|....-.+.++....++...|...++.+.+... +-.|| +..
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chH
Confidence 444444445555555555555555555554433333444444455555555555555555555443210 01122 222
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh
Q 007194 239 ALMKACANAGQVDRAREVYKMIHK 262 (613)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~ 262 (613)
.+...+...|.+.+|+.-|+....
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHH
Confidence 334445555555555555555544
No 210
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.78 E-value=2.3 Score=42.20 Aligned_cols=420 Identities=13% Similarity=0.129 Sum_probs=209.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCC----chHHHHHHHHHHHhhhHHHHHHHHH---HHhCCCCCHHHHHHHHHH--HHcCCC
Q 007194 37 RQGRISECIDLLEDMERKGLLD----MDKVYHARFFNVCKSQKAIKEAFRF---FKLVPNPTLSTFNMLMSV--CASSKD 107 (613)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~---~~~~~~~~~~~~~~li~~--~~~~g~ 107 (613)
+++++.+|..+|.++...-... ....+.+.++.++... +.+.-... +++-.+ ...|-.+..+ +-+.+.
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~--~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFG--KSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhhh
Confidence 8899999999999988664211 1133444455544432 23332222 232222 2234444444 456788
Q ss_pred hHHHHHHHHHHHHc--CCCC------------CHHHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCCCHHHHHHHH
Q 007194 108 SEGAFQVLRLVQEA--GLKA------------DCKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIEPNVHTYGALI 169 (613)
Q Consensus 108 ~~~A~~l~~~m~~~--g~~~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~~~~~~~li 169 (613)
+++|++.+.....+ +..| |-+.=+..++.+...|++.+++.+++++... ....+..+|+.++
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 99999988777654 2222 2223356677888999999999888887653 3447888898876
Q ss_pred HHHHhcC--------C-------HHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHhhC
Q 007194 170 DGCAKAG--------Q-------VAKAFGAYGIMRSK------NVKPDRVVFNALITACGQS--GAVDRAFDVLAEMNAE 226 (613)
Q Consensus 170 ~~~~~~g--------~-------~~~A~~~~~~m~~~------g~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~ 226 (613)
-+++++= . ++-+.-...+|... .+.|....+..++.-..-. .+..--++++..-..
T Consensus 175 lmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~- 253 (549)
T PF07079_consen 175 LMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWEN- 253 (549)
T ss_pred HHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHh-
Confidence 6665531 1 12222223333221 2233333333333322211 122223333333322
Q ss_pred CCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007194 227 VHPVDPDH-ITIGALMKACANAGQVDRAREVYKMIHKYNIKG----TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301 (613)
Q Consensus 227 ~~~~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (613)
.-+.|+. .+...|...+.+ +.+++..+-+.+....+.+ -..++..++....+.++...|...+.-+....+.
T Consensus 254 -~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~ 330 (549)
T PF07079_consen 254 -FYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPR 330 (549)
T ss_pred -hccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCc
Confidence 2344542 333444444444 4455554444433321111 1356778888888888888877777666543221
Q ss_pred CCH-----HHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHhHHHH---HHHHHhcCC-HHHHHHHHHHHHhC
Q 007194 302 PDE-----VFLSALIDFAGH----AGKVEAAFEILQEAKNQGISVGIISYSSL---MGACSNAKN-WQKALELYEHMKSI 368 (613)
Q Consensus 302 p~~-----~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~g~-~~~A~~~~~~m~~~ 368 (613)
... .+-..+-+..+. .-+...-+.++......++. .-..-.-| ..-+.+.|. -++|.++++.+.+.
T Consensus 331 ~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f 409 (549)
T PF07079_consen 331 ISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF 409 (549)
T ss_pred chhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 110 011222222221 11222334444444433321 11111122 223444454 67778888777664
Q ss_pred CCCCCHHHHHHHH----HHHHc---CCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHH--HhhcCCHHHHHHHHHHH
Q 007194 369 KLKPTVSTMNALI----TALCD---GDQLPKTMEVLSDMKSLGLCPN----TITYSILLVA--CERKDDVEVGLMLLSQA 435 (613)
Q Consensus 369 ~~~~~~~~~~~li----~~~~~---~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a--~~~~g~~~~a~~~~~~~ 435 (613)
. .-|..+-|.+. ..|.+ ...+.+-+++-+-..+.|+.|- ...-+.|.+| +...|++.++.-.-.-+
T Consensus 410 t-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL 488 (549)
T PF07079_consen 410 T-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWL 488 (549)
T ss_pred c-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 2 23343333322 22322 2234444444444556777763 2334444443 45678888776555555
Q ss_pred HHcCCCCCHHHHHHHHHHHH---hhHHHHHHhhhhh
Q 007194 436 KEDGVIPNLVMFKCIIGMCS---RRYEKARTLNEHV 468 (613)
Q Consensus 436 ~~~g~~p~~~~~~~li~~~~---~~~~~a~~~~~~~ 468 (613)
.+ +.|++.+|.-+- +|. ++|.+|......+
T Consensus 489 ~~--iaPS~~~~RLlG-l~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 489 TK--IAPSPQAYRLLG-LCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HH--hCCcHHHHHHHH-HHHHHHhhHHHHHHHHHhC
Confidence 55 677777776443 322 2677777666554
No 211
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.78 E-value=0.067 Score=39.07 Aligned_cols=51 Identities=8% Similarity=0.056 Sum_probs=20.4
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007194 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (613)
Q Consensus 138 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (613)
.+.+++++|.++++.+...+ +.+...|.....++.+.|++++|...|+...
T Consensus 6 ~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 6 LQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33444444444444444332 2233333334444444444444444444443
No 212
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.72 E-value=0.17 Score=46.44 Aligned_cols=125 Identities=18% Similarity=0.212 Sum_probs=72.4
Q ss_pred HHHHHhCC--CCCHHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 007194 81 FRFFKLVP--NPTLSTFNMLMSVCAS-----SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153 (613)
Q Consensus 81 ~~~~~~~~--~~~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 153 (613)
.+.|..++ ..|-.+|-+.+..+.. .+..+--...++.|.+.|+..|..+|+.|++.+-+-.-
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------- 122 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------- 122 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc-----------
Confidence 34455554 4566666666665543 34455555666777777777777777777766533211
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHh
Q 007194 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV-DRAFDVLAEMN 224 (613)
Q Consensus 154 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~ 224 (613)
.|.. .+....-.|= .+-+-+++++++|...|+.||..+-..|++++++.+-. .+..++.-.|.
T Consensus 123 -----iP~n-vfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 123 -----IPQN-VFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred -----ccHH-HHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 1111 1111111121 23345778888888888888888888888888877653 34444444443
No 213
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.69 E-value=0.085 Score=38.51 Aligned_cols=57 Identities=18% Similarity=0.230 Sum_probs=47.8
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 007194 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157 (613)
Q Consensus 100 ~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 157 (613)
..|.+.++++.|..+++.+...+ +.++..+.....++.+.|++++|.+.|+...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 56788889999999999998875 5577788888888999999999999999988763
No 214
>PRK15331 chaperone protein SicA; Provisional
Probab=95.68 E-value=0.17 Score=42.98 Aligned_cols=83 Identities=17% Similarity=0.198 Sum_probs=45.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhC---CCCCHHHHHHHHHHHHcCCChHHHH
Q 007194 36 IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEGAF 112 (613)
Q Consensus 36 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~ 112 (613)
-+.|++++|..+|.-+..-+ +++..+..-++..+...+++++|+..|... ...|+..+-.....+...|+.+.|.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHH
Confidence 36666666666666666655 455555555555555566666666665431 1223333444445555556666666
Q ss_pred HHHHHHHH
Q 007194 113 QVLRLVQE 120 (613)
Q Consensus 113 ~l~~~m~~ 120 (613)
..|.....
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 65555554
No 215
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.59 E-value=2.7 Score=41.52 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007194 271 VYTIAINCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 298 (613)
.+.+++.+..-.|+.++|.+..++|.+.
T Consensus 307 d~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 307 DVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 3455566666666666666666666654
No 216
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.55 E-value=4 Score=43.25 Aligned_cols=25 Identities=12% Similarity=0.001 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHH
Q 007194 92 LSTFNMLMSVCASSKDSEGAFQVLR 116 (613)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~l~~ 116 (613)
..+|..+.+-.-..|+++.|..+++
T Consensus 507 ~iSy~~iA~~Ay~~GR~~LA~kLle 531 (829)
T KOG2280|consen 507 GISYAAIARRAYQEGRFELARKLLE 531 (829)
T ss_pred ceeHHHHHHHHHhcCcHHHHHHHHh
Confidence 3445555555555566666555544
No 217
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.34 E-value=1.7 Score=37.66 Aligned_cols=128 Identities=11% Similarity=0.033 Sum_probs=77.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHH
Q 007194 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK---LKPTVSTM 377 (613)
Q Consensus 301 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~ 377 (613)
.|++..-..|..+..+.|+..+|...|++...--+.-|....-.+.++....++.-.|...++.+-+.. -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 355555556666677777777777777776655455566666667777777777777777777665532 1222 33
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 007194 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432 (613)
Q Consensus 378 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 432 (613)
-.+...|...|.+.+|..-|+.... .-|+...-...-..+.++|+..++..-+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 4455667777777777777777766 3455444333334445666655554433
No 218
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.11 E-value=0.83 Score=46.67 Aligned_cols=166 Identities=13% Similarity=0.183 Sum_probs=91.3
Q ss_pred ChhhhHHHHHHHHhcCCHHHHHHHHH--HHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 007194 24 DVSEQLHSYNRLIRQGRISECIDLLE--DMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSV 101 (613)
Q Consensus 24 ~~~~~~~~~~~l~~~g~~~~A~~l~~--~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~ 101 (613)
.++.+..-|...+-+++++++..+.+ ++. .. +| ......++++..+.|..+.|+++-. |+ ..-...
T Consensus 260 ~ld~~~~~fk~av~~~d~~~v~~~i~~~~ll-~~-i~--~~~~~~i~~fL~~~G~~e~AL~~~~-----D~---~~rFeL 327 (443)
T PF04053_consen 260 ELDLSELEFKTAVLRGDFEEVLRMIAASNLL-PN-IP--KDQGQSIARFLEKKGYPELALQFVT-----DP---DHRFEL 327 (443)
T ss_dssp E--HHHHHHHHHHHTT-HHH-----HHHHTG-GG-----HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHH
T ss_pred EECHHHHHHHHHHHcCChhhhhhhhhhhhhc-cc-CC--hhHHHHHHHHHHHCCCHHHHHhhcC-----Ch---HHHhHH
Confidence 45567777777888888888766664 111 11 12 2234455666667777777765532 21 223344
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007194 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181 (613)
Q Consensus 102 ~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 181 (613)
..+.|+++.|.++.+. .++...|..|.+...+.|+++-|.+.|.+... |..|+-.|.-.|+.+.-
T Consensus 328 Al~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L 392 (443)
T PF04053_consen 328 ALQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKL 392 (443)
T ss_dssp HHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHH
T ss_pred HHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHH
Confidence 5566777777665432 23566777777777777777777777766542 55666666777777666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 007194 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222 (613)
Q Consensus 182 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 222 (613)
.++-+.....| -+|....++.-.|+.++..+++.+
T Consensus 393 ~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 393 SKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66666666554 244555555556677666666654
No 219
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.07 E-value=4.9 Score=43.20 Aligned_cols=146 Identities=12% Similarity=0.067 Sum_probs=86.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHcCCChHH
Q 007194 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-NPTLSTFNMLMSVCASSKDSEG 110 (613)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~ 110 (613)
.+.|.+..-++-|+.+-..-.... .....++.-.+..+...|++++|...|-+.. .-++ ..+++-|....+..+
T Consensus 341 L~iL~kK~ly~~Ai~LAk~~~~d~--d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~---s~Vi~kfLdaq~Ikn 415 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKSQHLDE--DTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP---SEVIKKFLDAQRIKN 415 (933)
T ss_pred HHHHHHhhhHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh---HHHHHHhcCHHHHHH
Confidence 344556666777766654332211 1233456666667778899999998876533 2111 234566666667777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007194 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186 (613)
Q Consensus 111 A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 186 (613)
--..++.+.+.|+. +...-..|+.+|.+.++.++-.++.+... .|.. ..-....+..+-+.+-.++|..+-.
T Consensus 416 Lt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 416 LTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred HHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHH
Confidence 77888888888854 44455678999999998888776665543 2211 1112334445555555555554433
No 220
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=3.3 Score=38.90 Aligned_cols=143 Identities=15% Similarity=0.069 Sum_probs=65.3
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 007194 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217 (613)
Q Consensus 138 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 217 (613)
...|++.+|..+|+...... +-+...--.++.+|...|+.+.|..++..+...--.........-|..+.+.....+..
T Consensus 145 ~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 34555556665555555442 22334444555556666666666666655543321111222122233333333333333
Q ss_pred HHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCH
Q 007194 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI-KGTPEVYTIAINCCSQTGDW 285 (613)
Q Consensus 218 ~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~ 285 (613)
.+-.+.... +.|...-..+...+...|+.+.|.+.+-.+.+++. -.+...-..+++.+.--|.-
T Consensus 224 ~l~~~~aad----Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~ 288 (304)
T COG3118 224 DLQRRLAAD----PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPA 288 (304)
T ss_pred HHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCC
Confidence 333333221 22444444555566666666666655544433321 12334555555555555533
No 221
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.85 E-value=1.1 Score=38.19 Aligned_cols=121 Identities=12% Similarity=0.163 Sum_probs=75.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCC----CCHHH-HHHHH--HHHHcCCC
Q 007194 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLST-FNMLM--SVCASSKD 107 (613)
Q Consensus 35 l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~-~~~li--~~~~~~g~ 107 (613)
|.+.+..++|+.-|.++.+.|.-............+..+.|+...|...|+++.. |-+.- ..-|- -.+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 4588999999999999999886555554444555566677888888888887642 21110 11111 12455667
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 007194 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155 (613)
Q Consensus 108 ~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (613)
++......+-+...+-+.-...-..|.-+-.+.|++..|.+.|..+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 776666655555444333344445565566677777777777777654
No 222
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.84 E-value=2.1 Score=36.03 Aligned_cols=83 Identities=12% Similarity=0.153 Sum_probs=38.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 007194 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212 (613)
Q Consensus 133 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 212 (613)
++..+...+.......+++.+...+ ..+....+.++..|++.+. .+.++.+.. ..+......+++.|.+.+.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 4444444455555555555555444 2344455555555554422 233333321 1122333334555555555
Q ss_pred HHHHHHHHHHH
Q 007194 213 VDRAFDVLAEM 223 (613)
Q Consensus 213 ~~~A~~~~~~m 223 (613)
++++.-++.++
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 55555555443
No 223
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.75 E-value=4.8 Score=39.81 Aligned_cols=32 Identities=19% Similarity=0.058 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 007194 407 PNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (613)
Q Consensus 407 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (613)
.|--.+.+++.++.-.|+++.|.+..++|.+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 35555677788888888888888888888864
No 224
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.72 E-value=1.3 Score=45.32 Aligned_cols=131 Identities=12% Similarity=0.132 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007194 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (613)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 208 (613)
-.+.++..+-+.|-.+.|+++-..-. .-.....+.|+++.|.++-++. ++...|..|.....
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHH
Confidence 35555666666666666655433211 1223344566666665543322 24556666666666
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007194 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (613)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 288 (613)
+.|+++-|.+.|.+.. -+..|+-.|.-.|+.+.-.++.+.....| -++....++...|+.++.
T Consensus 359 ~~g~~~lAe~c~~k~~-----------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~c 421 (443)
T PF04053_consen 359 RQGNIELAEECYQKAK-----------DFSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEEC 421 (443)
T ss_dssp HTTBHHHHHHHHHHCT------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHH
T ss_pred HcCCHHHHHHHHHhhc-----------CccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHH
Confidence 6666666666665532 13445555566666666555555555554 244444455555666555
Q ss_pred HHHHHH
Q 007194 289 CSVYDD 294 (613)
Q Consensus 289 ~~~~~~ 294 (613)
.+++.+
T Consensus 422 v~lL~~ 427 (443)
T PF04053_consen 422 VDLLIE 427 (443)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.66 E-value=0.11 Score=38.50 Aligned_cols=62 Identities=18% Similarity=0.158 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHhC--CCC---CC-HHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 007194 375 STMNALITALCDGDQLPKTMEVLSDMKSL--GLC---PN-TITYSILLVACERKDDVEVGLMLLSQAK 436 (613)
Q Consensus 375 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~---p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (613)
.+|+.+...|...|++++|++.|++..+. ... |+ ..++..+...+...|++++|.+.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555555566666666666666554421 011 11 2345555566666666666666666554
No 226
>PRK15331 chaperone protein SicA; Provisional
Probab=94.53 E-value=2.7 Score=35.93 Aligned_cols=90 Identities=9% Similarity=-0.048 Sum_probs=59.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCH
Q 007194 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355 (613)
Q Consensus 276 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 355 (613)
.--+.+.|++++|..+|.-+...++. +..-|..|..++-..+++++|...|......+ .-|+..+-....+|...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCH
Confidence 33445677777777777777665543 44455566666666777777777777665544 23445555666777777777
Q ss_pred HHHHHHHHHHHh
Q 007194 356 QKALELYEHMKS 367 (613)
Q Consensus 356 ~~A~~~~~~m~~ 367 (613)
+.|...|....+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 777777777765
No 227
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.52 E-value=5.1 Score=39.09 Aligned_cols=279 Identities=15% Similarity=0.111 Sum_probs=171.2
Q ss_pred hHHHHHHHHHHHhCC---CCCHHHHHHHHHH--HHcCCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcCChhHH
Q 007194 74 QKAIKEAFRFFKLVP---NPTLSTFNMLMSV--CASSKDSEGAFQVLRLVQEAGLKADCK--LYTTLITTCAKSGKVDAM 146 (613)
Q Consensus 74 ~~~~~~A~~~~~~~~---~~~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~a 146 (613)
.|+-..|.++-.+.. ..|-...-.++.+ -.-.|+++.|.+-|+.|... |... -...|.-..-+.|..+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 455666666654422 3344444444433 44578999999999999742 2211 123333344577888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHH--HHHHHHHHHc---cCCHHHHHHHH
Q 007194 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-NVKPDRVV--FNALITACGQ---SGAVDRAFDVL 220 (613)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~--~~~li~~~~~---~g~~~~A~~~~ 220 (613)
...-+..-..- +.-...+.+.+...|..|+++.|+++.+.-+.. -+.++..- -..|+.+-.. ..+...|...-
T Consensus 174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 88777765542 234567888899999999999999999877654 23444332 2233332221 23455555555
Q ss_pred HHHhhCCCCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-C
Q 007194 221 AEMNAEVHPVDPDHITI-GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-K 298 (613)
Q Consensus 221 ~~m~~~~~~~~~~~~~~-~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~ 298 (613)
.+..+ +.||.+-- ..-..++.+.|+..++-.+++.+-+..- .+.++... .+.+.|+ .++.-+++..+ .
T Consensus 253 ~~a~K----L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP--HP~ia~lY--~~ar~gd--ta~dRlkRa~~L~ 322 (531)
T COG3898 253 LEANK----LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP--HPDIALLY--VRARSGD--TALDRLKRAKKLE 322 (531)
T ss_pred HHHhh----cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC--ChHHHHHH--HHhcCCC--cHHHHHHHHHHHH
Confidence 44443 35553322 2234778899999999999999988754 33444322 2344454 33333333322 1
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHh-cCCHHHHHHHHHHHHhC
Q 007194 299 GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN-AKNWQKALELYEHMKSI 368 (613)
Q Consensus 299 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~ 368 (613)
..+| +..+...+..+....|++..|..--+...+. .|....|..|.+.-.. .|+-.++...+.+..+.
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 1233 4566667777888889988887766665554 5777788777776644 59999999999888764
No 228
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.49 E-value=4.3 Score=38.14 Aligned_cols=143 Identities=13% Similarity=0.069 Sum_probs=81.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCCh
Q 007194 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250 (613)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~ 250 (613)
.....|++.+|..+|+...... +-+...--.+..+|...|+.+.|..++..+..+.. .........-+..+.+....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~--~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ--DKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccch--hhHHHHHHHHHHHHHHHhcC
Confidence 3456777777777777776552 22334445567777777777777777777654310 11112222334445555555
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCC
Q 007194 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK--GVIPDEVFLSALIDFAGHAGK 319 (613)
Q Consensus 251 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~ 319 (613)
.+...+-...... +.|...-..+...+...|+.++|.+.+-.+.+. |.. |...-..+++.+.-.|.
T Consensus 220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGP 287 (304)
T ss_pred CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCC
Confidence 5444444444331 346666677777777777777777776666543 332 44455566666655553
No 229
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.48 E-value=0.32 Score=44.74 Aligned_cols=117 Identities=21% Similarity=0.290 Sum_probs=77.1
Q ss_pred CCCHHHHHHHHHHHHHc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 007194 124 KADCKLYTTLITTCAKS-----GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198 (613)
Q Consensus 124 ~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 198 (613)
..|-.+|.+.+..+... +.++-....+..|.+.|++.|..+|+.|++.+=+-.- .|. .
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~-n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQ-N 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccH-H
Confidence 44566676666666543 5567777788889999999999999998887654321 121 1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHH
Q 007194 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV-DRAREVYKMIH 261 (613)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~-~~A~~~~~~~~ 261 (613)
.+....--|-+ +-+-+.+++++|.. +|+.||..+-..|++++.+.+-. .+..++.--|.
T Consensus 127 vfQ~~F~HYP~--QQ~C~I~vLeqME~--hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 127 VFQKVFLHYPQ--QQNCAIKVLEQMEW--HGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHhhCch--hhhHHHHHHHHHHH--cCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 22222222222 23457889999986 58999999999999999988864 33334433333
No 230
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.44 E-value=2.6 Score=35.40 Aligned_cols=125 Identities=14% Similarity=0.179 Sum_probs=65.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007194 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317 (613)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 317 (613)
..++..+.+.+.......+++.+...+ ..++..++.++..|++.+. .+..+.+.. . ++......+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHHHHHHHHc
Confidence 345555666666677777777666665 3555667777777766532 233333331 1 1233344556666666
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007194 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA-KNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (613)
Q Consensus 318 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (613)
+.++++..++..+.. +...+..+... ++.+.|.+.+.+- .+...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 666666666654421 11222222223 5666666655541 24456665555544
No 231
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.43 E-value=0.12 Score=38.31 Aligned_cols=62 Identities=19% Similarity=0.274 Sum_probs=34.5
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 007194 340 ISYSSLMGACSNAKNWQKALELYEHMKSI----KL-KPT-VSTMNALITALCDGDQLPKTMEVLSDMK 401 (613)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~ 401 (613)
.+++.+...|...|++++|...|++..+. |- .|+ ..+++.+...|...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555666666666666666666655421 10 111 3455666666666777777766666644
No 232
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.27 E-value=6.3 Score=39.19 Aligned_cols=145 Identities=10% Similarity=0.131 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHH
Q 007194 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQG-ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM-NALI 381 (613)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~li 381 (613)
...|...+..-.+..-++.|..+|-+..+.+ ..+++.++++++..++ .|+..-|.++|+--... -||...| +-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4667788888888888999999999999988 5678889999998776 57778899999864432 3554443 4566
Q ss_pred HHHHcCCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007194 382 TALCDGDQLPKTMEVLSDMKSLGLCPN--TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (613)
Q Consensus 382 ~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 454 (613)
.-+..-++-+.|..+|+...+. +..+ ...|..+|+--..-|++..+..+-++|.+ .-|...+-....+.|
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry 545 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRY 545 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHH
Confidence 6777888999999999966543 3334 56899999988999999998888888876 345444444444444
No 233
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.10 E-value=1.6 Score=43.82 Aligned_cols=63 Identities=11% Similarity=-0.024 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 007194 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC----KLYTTLITTCAKSGKVDAMFEVFHEMVN 155 (613)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (613)
+...|+.+..+|.+.|++++|+..|+...+. .|+. .+|..+..+|...|+.++|++.+++..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556666666666666666666666666654 3332 2456666666666666666666666654
No 234
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.97 E-value=1.7 Score=43.56 Aligned_cols=63 Identities=13% Similarity=0.082 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007194 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP---EVYTIAINCCSQTGDWEFACSVYDDMTK 297 (613)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 297 (613)
...++.+..+|.+.|++++|...|++..+.+ +.+. .+|..+..+|.+.|+.++|+..+++..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELN-PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555555555555555555554443 1122 2355555555555555555555555544
No 235
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.88 E-value=3.2 Score=43.13 Aligned_cols=179 Identities=14% Similarity=0.150 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCH-----HHHHHHHHHHHc----cCCHH
Q 007194 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN-VKPDR-----VVFNALITACGQ----SGAVD 214 (613)
Q Consensus 145 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~~~~~li~~~~~----~g~~~ 214 (613)
-..-+|.-+... +||. ...+++...=.|+-+.+++.+.+..+.+ +.-.. ..|...+..++. ..+.+
T Consensus 175 ~G~G~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~ 250 (468)
T PF10300_consen 175 FGFGLFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLE 250 (468)
T ss_pred HHHHHHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHH
Confidence 334455555543 1333 5567777777889999998888776542 22111 234444444433 45688
Q ss_pred HHHHHHHHHhhCCCCCCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHhcC--C-CCCHHHHHHHHHHHHhcCCHHHHHH
Q 007194 215 RAFDVLAEMNAEVHPVDPDHITIGAL-MKACANAGQVDRAREVYKMIHKYN--I-KGTPEVYTIAINCCSQTGDWEFACS 290 (613)
Q Consensus 215 ~A~~~~~~m~~~~~~~~~~~~~~~~l-l~~~~~~g~~~~A~~~~~~~~~~~--~-~~~~~~~~~li~~~~~~g~~~~A~~ 290 (613)
.|.+++..+... -|+...|... .+.+...|++++|.+.|+...... . +.....+--+.-.+.-..+|++|.+
T Consensus 251 ~a~~lL~~~~~~----yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 251 EAEELLEEMLKR----YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred HHHHHHHHHHHh----CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 999999999874 5666655443 467788999999999999754321 1 1123345556677888899999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH-------HHHHHHHHHHHH
Q 007194 291 VYDDMTKKGVIPDEVFLSALIDF-AGHAGKV-------EAAFEILQEAKN 332 (613)
Q Consensus 291 ~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~-------~~A~~~~~~~~~ 332 (613)
.|..+.+..-- +..+|.-+..+ +...|+. ++|.++|.++..
T Consensus 327 ~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 327 YFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 99999886432 34444444333 3346767 889999988754
No 236
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.30 E-value=3.8 Score=33.38 Aligned_cols=62 Identities=18% Similarity=0.132 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007194 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (613)
Q Consensus 307 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 369 (613)
....+......|+-++-.++...+.+.+ .+++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3444555555666666666666655432 4555566666666666666666666666665554
No 237
>PRK11906 transcriptional regulator; Provisional
Probab=93.27 E-value=8.7 Score=38.81 Aligned_cols=143 Identities=12% Similarity=0.102 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHhCC---CCC---HHHHHHHHHHHH---------cCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 007194 75 KAIKEAFRFFKLVP---NPT---LSTFNMLMSVCA---------SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139 (613)
Q Consensus 75 ~~~~~A~~~~~~~~---~~~---~~~~~~li~~~~---------~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~ 139 (613)
...+.|+.+|.+.. +-| ...|..+...+. ......+|.++.+...+.+ +.|......+..+..-
T Consensus 272 ~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 272 ESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHh
Confidence 35667777787655 322 333333222211 1234556777777777776 6677777777777777
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHccCCHHHH
Q 007194 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV---VFNALITACGQSGAVDRA 216 (613)
Q Consensus 140 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~A 216 (613)
.++++.|..+|++....+ +....+|........-+|+.++|.+.+++..+. .|... ..-..+..|+..+ ++.|
T Consensus 351 ~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~~-~~~~ 426 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPNP-LKNN 426 (458)
T ss_pred hcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCCc-hhhh
Confidence 888888888888887763 223445555555566688888888888886654 33322 2223344555544 6667
Q ss_pred HHHHHH
Q 007194 217 FDVLAE 222 (613)
Q Consensus 217 ~~~~~~ 222 (613)
.+++-+
T Consensus 427 ~~~~~~ 432 (458)
T PRK11906 427 IKLYYK 432 (458)
T ss_pred HHHHhh
Confidence 766644
No 238
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.19 E-value=1.8 Score=42.38 Aligned_cols=60 Identities=10% Similarity=0.064 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007194 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 298 (613)
+.+.-+|.+.+++..|++.-++....+ ++++-..-.=..++...|+++.|+..|+++++.
T Consensus 261 lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 261 LNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 334444444444444444444444443 334444444444444445555555555544443
No 239
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.15 E-value=4 Score=33.23 Aligned_cols=84 Identities=14% Similarity=0.153 Sum_probs=54.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHH
Q 007194 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 430 (613)
Q Consensus 351 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 430 (613)
.+|++.....-+-.+ ..+....+..+..+.+.|+-+.-.++..++.+. -.|++.....+..||.+.|+..++-+
T Consensus 68 ~C~NlKrVi~C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~e 141 (161)
T PF09205_consen 68 KCGNLKRVIECYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANE 141 (161)
T ss_dssp G-S-THHHHHHHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred hhcchHHHHHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHH
Confidence 345554444444332 234555667778888899988888888887653 37888888899999999999999999
Q ss_pred HHHHHHHcCC
Q 007194 431 LLSQAKEDGV 440 (613)
Q Consensus 431 ~~~~~~~~g~ 440 (613)
++.++-+.|+
T Consensus 142 ll~~ACekG~ 151 (161)
T PF09205_consen 142 LLKEACEKGL 151 (161)
T ss_dssp HHHHHHHTT-
T ss_pred HHHHHHHhch
Confidence 9999888875
No 240
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.07 E-value=5.8 Score=41.19 Aligned_cols=26 Identities=12% Similarity=0.061 Sum_probs=16.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 007194 237 IGALMKACANAGQVDRAREVYKMIHK 262 (613)
Q Consensus 237 ~~~ll~~~~~~g~~~~A~~~~~~~~~ 262 (613)
+..++....-.|+-+.+++.+.+..+
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~ 216 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASK 216 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhc
Confidence 44456666666777777777766544
No 241
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.06 E-value=2.1 Score=41.97 Aligned_cols=123 Identities=11% Similarity=0.083 Sum_probs=68.8
Q ss_pred HHHHhcCChhHHHHHHHHHHhc-----CCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007194 242 KACANAGQVDRAREVYKMIHKY-----NIK---------GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 307 (613)
Q Consensus 242 ~~~~~~g~~~~A~~~~~~~~~~-----~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 307 (613)
+.|.+.|++..|..-|+++.+. ..+ .-..+++.+.-+|.+.+++.+|++.-...+..+.. |.-.+
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHH
Confidence 3456666666666666554321 000 01235666667777777777777777777666543 55555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHH-HHHHHHHHH
Q 007194 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK-ALELYEHMK 366 (613)
Q Consensus 308 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~ 366 (613)
-.=..+|...|+++.|+..|+.+.+.. +.|..+-+.|+..--+.....+ ..++|..|.
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555566667777777777777776653 3344444444444444333332 245555554
No 242
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.62 E-value=3.9 Score=38.99 Aligned_cols=115 Identities=10% Similarity=-0.030 Sum_probs=70.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHH----HHHHHHHhcCCh
Q 007194 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG----ALMKACANAGQV 250 (613)
Q Consensus 175 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~----~ll~~~~~~g~~ 250 (613)
.|.+.+|-..++++.+. .+.|...+.-.=.+|.-.|+.+.-...++++... ..+|...|. .+.-++..+|-+
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~---wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK---WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc---cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 56666666666666654 3556666666666777777777666666666532 234433332 223344566777
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007194 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294 (613)
Q Consensus 251 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 294 (613)
++|++.-++..+.+ +.|.-+-.+....+-..|++.++.+...+
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 77777777776665 45555556666666677777777766544
No 243
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.48 E-value=1.6 Score=41.08 Aligned_cols=77 Identities=17% Similarity=0.258 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHHHH
Q 007194 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS-----KNVKPDRVVFNAL 203 (613)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~l 203 (613)
++..++..+..+|+.+.+.+.++++.... +-+...|..+|.+|.+.|+...|++.|+++.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45566777777777788877777777664 45677788888888888888888877777654 4677776666555
Q ss_pred HHH
Q 007194 204 ITA 206 (613)
Q Consensus 204 i~~ 206 (613)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
No 244
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.41 E-value=4 Score=34.02 Aligned_cols=77 Identities=10% Similarity=0.071 Sum_probs=45.8
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007194 99 MSVCASSKDSEGAFQVLRLVQEAGL--KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (613)
Q Consensus 99 i~~~~~~g~~~~A~~l~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 175 (613)
.....+.|++++|...|+.+..+=. +-...+.-.|+.+|.+.+++++|...+++.++..-.--..-|-..+.+++..
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 3444566778888888877776421 1123455567777788888888888887777653111123344455554443
No 245
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.27 E-value=3.8 Score=39.00 Aligned_cols=152 Identities=13% Similarity=0.064 Sum_probs=98.0
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc---CCCCCHHHHHHHHHHHHhcCCH
Q 007194 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY---NIKGTPEVYTIAINCCSQTGDW 285 (613)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~ 285 (613)
..|+..+|-..++++.+. .+.|...+...=.+|.-.|+.+.-...++++... +++-...+-....-++...|.+
T Consensus 115 ~~g~~h~a~~~wdklL~d---~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD---YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh---CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 356777777777777763 4667777777778888888888888888887654 2222233334445556678888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCcCHHhHHHHHHHHHhcCCHHHHHHHH
Q 007194 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ---GISVGIISYSSLMGACSNAKNWQKALELY 362 (613)
Q Consensus 286 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 362 (613)
++|.+.-++..+.+.. |...-.++...+...|+..++.++..+-... +.-.-..-|-...-.+...+.++.|.++|
T Consensus 192 ~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 9998888887776543 5555566666677788888888876654322 11111112223333455567788888888
Q ss_pred HH
Q 007194 363 EH 364 (613)
Q Consensus 363 ~~ 364 (613)
+.
T Consensus 271 D~ 272 (491)
T KOG2610|consen 271 DR 272 (491)
T ss_pred HH
Confidence 74
No 246
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.16 E-value=11 Score=36.00 Aligned_cols=62 Identities=11% Similarity=0.106 Sum_probs=31.7
Q ss_pred HHHHHHHHHHccCCHH---HHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 007194 199 VFNALITACGQSGAVD---RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263 (613)
Q Consensus 199 ~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 263 (613)
++..++.+|...+..+ +|.++++.+..+ .+-+| .++..-+..+.+.++.+.+.+.+.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~--~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKP--EVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCc--HHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 4455566666655433 455555555433 12222 23333344455566666666666666554
No 247
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.15 E-value=10 Score=36.72 Aligned_cols=127 Identities=15% Similarity=0.097 Sum_probs=69.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHHH-
Q 007194 239 ALMKACANAGQVDRAREVYKMIHKYNI-----KGTPEVYTIAINCCSQTGDWEFACSVYDDMTK----KGVIPDEVFLS- 308 (613)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~~~~- 308 (613)
++..++...+.++++++.|+...+.-- .....++..|.+.|.+..++++|.-...+..+ .++.--..-|.
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 345556666667777777765543210 11234567777777777777776655544322 22221111222
Q ss_pred ----HHHHHHHhcCCHHHHHHHHHHHHH----CCCC-cCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 007194 309 ----ALIDFAGHAGKVEAAFEILQEAKN----QGIS-VGIISYSSLMGACSNAKNWQKALELYEHM 365 (613)
Q Consensus 309 ----~li~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (613)
.+.-++...|++..|.+.-++..+ .|-. ........+.+.|-..|+.+.|+.-|++.
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 222345566776666666665443 3321 12334456777788888888887777654
No 248
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=92.13 E-value=14 Score=36.94 Aligned_cols=110 Identities=13% Similarity=0.139 Sum_probs=83.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHH-HHHH
Q 007194 339 IISYSSLMGACSNAKNWQKALELYEHMKSIK-LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY-SILL 416 (613)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll 416 (613)
..+|..+++.-.+..-++.|+.+|-+..+.+ +.+++..++++|.-++ .|+..-|..+|+.-... .||...| .-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4577888888888888999999999999888 6788999999998877 57788899999874442 4665544 4566
Q ss_pred HHHhhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHH
Q 007194 417 VACERKDDVEVGLMLLSQAKEDGVIPN--LVMFKCIIG 452 (613)
Q Consensus 417 ~a~~~~g~~~~a~~~~~~~~~~g~~p~--~~~~~~li~ 452 (613)
.-+...++-+.|+.+|+..++. +..+ -.+|..+|+
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~ 510 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIE 510 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHH
Confidence 6777888889999999855532 2222 456777775
No 249
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.03 E-value=0.64 Score=29.82 Aligned_cols=26 Identities=27% Similarity=0.257 Sum_probs=11.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhc
Q 007194 238 GALMKACANAGQVDRAREVYKMIHKY 263 (613)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~~~~~ 263 (613)
..+...|.+.|++++|.++|+++.+.
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 250
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.83 E-value=4.2 Score=33.89 Aligned_cols=52 Identities=15% Similarity=0.186 Sum_probs=22.5
Q ss_pred cCCHHHHHHHHHHHHHCC--CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007194 317 AGKVEAAFEILQEAKNQG--ISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368 (613)
Q Consensus 317 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (613)
.|++++|.+.|+.+...- -+-....--.|+.+|.+.+++++|...+++..+.
T Consensus 23 ~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 23 KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 344444444444444331 0112233334444455555555555555544443
No 251
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.76 E-value=3.7 Score=33.32 Aligned_cols=90 Identities=17% Similarity=0.108 Sum_probs=63.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC-CCCCCH---HHHHHHHHHHhhcC
Q 007194 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL-GLCPNT---ITYSILLVACERKD 423 (613)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~---~t~~~ll~a~~~~g 423 (613)
+.+..|+++.|.+.|.+....- +.+...||.-..++.-.|+.++|++-+++..+. |-+ +. ..|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 4567788888888888776542 356778888888888888888888888887763 211 22 22333334567788
Q ss_pred CHHHHHHHHHHHHHcC
Q 007194 424 DVEVGLMLLSQAKEDG 439 (613)
Q Consensus 424 ~~~~a~~~~~~~~~~g 439 (613)
+.+.|+.-|+...+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 8888888888777655
No 252
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.66 E-value=11 Score=34.81 Aligned_cols=54 Identities=9% Similarity=0.019 Sum_probs=23.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHcCCChhHHHHHHHHH
Q 007194 346 MGACSNAKNWQKALELYEHMKSIKLKPTV---STMNALITALCDGDQLPKTMEVLSDM 400 (613)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m 400 (613)
.+-|.+.|.+..|..-+++|.+. .+.+. ...-.|..+|...|..++|.+.-.-+
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 34455555555555555555543 11111 22233344444555555544444333
No 253
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.58 E-value=2.4 Score=40.02 Aligned_cols=77 Identities=16% Similarity=0.201 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 007194 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-----KGVIPDEVFLSAL 310 (613)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~~l 310 (613)
++..++..+...|+.+.+...++.+.... +.+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 55667777777788888888888877776 66777888888888888888888888877654 5677766655544
Q ss_pred HHH
Q 007194 311 IDF 313 (613)
Q Consensus 311 i~~ 313 (613)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 443
No 254
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=91.56 E-value=15 Score=36.08 Aligned_cols=287 Identities=15% Similarity=0.092 Sum_probs=158.8
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHccCCHHH
Q 007194 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC--AKAGQVAKAFGAYGIMRSKNVKPDRV--VFNALITACGQSGAVDR 215 (613)
Q Consensus 140 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~ 215 (613)
.|+-..|.++-.+-.+. +..|....-.|+.+- .-.|+++.|.+-|+.|... |... -...|.-.--+.|..+.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence 34555555554443211 122333333333322 2356677777777766542 2211 12223333345566666
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CCCHH--HHHHHHHHHH---hcCCHHHHH
Q 007194 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI-KGTPE--VYTIAINCCS---QTGDWEFAC 289 (613)
Q Consensus 216 A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~--~~~~li~~~~---~~g~~~~A~ 289 (613)
|.+.-++.-... +--...+.+++...+..|+++.|+++.+.-....+ .++.. .-..|+.+-. -..+...|.
T Consensus 173 Ar~yAe~Aa~~A---p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 173 ARHYAERAAEKA---PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHhhc---cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 666666554321 11134556666667777777777777765443321 22211 1112222211 123345555
Q ss_pred HHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007194 290 SVYDDMTKKGVIPDEVFL-SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368 (613)
Q Consensus 290 ~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (613)
..-.+..+ +.||.+-- .....++.+.|++.++-.+++.+.+....|+. + ++..+.+.|+.- ..-+++....
T Consensus 250 ~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~ar~gdta--~dRlkRa~~L 321 (531)
T COG3898 250 DDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--A--LLYVRARSGDTA--LDRLKRAKKL 321 (531)
T ss_pred HHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--H--HHHHHhcCCCcH--HHHHHHHHHH
Confidence 55444443 23443322 22345788899999999999999988544443 3 233456666632 2222222110
Q ss_pred -CC-CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHcCCCCC
Q 007194 369 -KL-KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC-ERKDDVEVGLMLLSQAKEDGVIPN 443 (613)
Q Consensus 369 -~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~~~~~~~~~g~~p~ 443 (613)
.+ +.|..+--.+..+-...|++..|..--+...+ ..|....|..+.+.- ...|+-.++++.+.+..+..-+|.
T Consensus 322 ~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 322 ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 12 34567777888888899999988887777666 478888888887765 445999999999999987655554
No 255
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.52 E-value=5.7 Score=33.84 Aligned_cols=50 Identities=12% Similarity=0.017 Sum_probs=29.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC
Q 007194 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88 (613)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 88 (613)
+.++.+++..+++.+.-.. |........-...+...|++.+|.++|+.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLR--P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLR--PEFPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred ccCChHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 5666677777776666554 4444444444445555566666666666554
No 256
>PRK11906 transcriptional regulator; Provisional
Probab=91.45 E-value=18 Score=36.73 Aligned_cols=76 Identities=11% Similarity=0.005 Sum_probs=31.9
Q ss_pred HHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 007194 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMK 401 (613)
Q Consensus 323 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~ 401 (613)
|.+.-....+.+ +.|+.....+..+..-.++++.|...|++.... .|| ...|......+.-+|+.++|.+.+++..
T Consensus 323 a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 323 ALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 333333333333 334444444444444444455555555544443 233 2233333333333455555555555433
No 257
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.40 E-value=6.8 Score=31.88 Aligned_cols=91 Identities=9% Similarity=0.048 Sum_probs=52.8
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCC
Q 007194 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH---TYGALIDGCAKAGQ 177 (613)
Q Consensus 101 ~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~---~~~~li~~~~~~g~ 177 (613)
+++..|+.+.|++.|......- +.....||.-..++.-.|+.++|++-+++..+..-..+.. .|..-...|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3556677777777776666542 4456667777777777777777776666665532122221 22222334555666
Q ss_pred HHHHHHHHHHHHhCC
Q 007194 178 VAKAFGAYGIMRSKN 192 (613)
Q Consensus 178 ~~~A~~~~~~m~~~g 192 (613)
-+.|..-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 677776666665554
No 258
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.28 E-value=15 Score=35.50 Aligned_cols=131 Identities=14% Similarity=0.261 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc--cCC----HHHHHHHHHHHhhCCCCC-CCCHHHHHHHHHHHHhcCC-
Q 007194 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQ--SGA----VDRAFDVLAEMNAEVHPV-DPDHITIGALMKACANAGQ- 249 (613)
Q Consensus 178 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g~----~~~A~~~~~~m~~~~~~~-~~~~~~~~~ll~~~~~~g~- 249 (613)
+++.+.+++.|.+.|+..+..+|-+....... ..+ ...|..+|+.|++..+-+ .++..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556667777777777766665543222222 222 456777788877653222 2344455555433 2222
Q ss_pred ---hhHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007194 250 ---VDRAREVYKMIHKYNIKGTPE--VYTIAINCCSQTGD--WEFACSVYDDMTKKGVIPDEVFLSAL 310 (613)
Q Consensus 250 ---~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~l 310 (613)
.+.++.+|+.+.+.|+..+.. ....++........ ...+.++++.+.+.|+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 244556666666655544322 22222222111111 23556666666666666554444433
No 259
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.28 E-value=3.6 Score=38.22 Aligned_cols=59 Identities=15% Similarity=0.200 Sum_probs=25.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007194 240 LMKACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 240 ll~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 298 (613)
|..++...|++++|..+|..+.+.-- +--+...--|.......|+.++|...|+++.+.
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 44445555555555555544433210 111233444444444445555555555444443
No 260
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.20 E-value=3.5 Score=38.27 Aligned_cols=61 Identities=15% Similarity=0.063 Sum_probs=25.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 007194 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263 (613)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 263 (613)
|..++...|++++|..+|..+.+.....+--...+--|.....+.|+.++|...|+++.+.
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4444444455555555544444321111111223333444444455555555555544443
No 261
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.87 E-value=9.9 Score=32.84 Aligned_cols=133 Identities=14% Similarity=0.120 Sum_probs=66.3
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007194 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (613)
Q Consensus 183 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 262 (613)
+.++.+.+.+++|+...+..+++.+.+.|++....+++.- ++-+|.......+-.+. +....+.++=-.|.+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~------~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY------HVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh------cccCCcHHHHHHHHHhH--ccChHHHHHHHHHHH
Confidence 3444555566777777777777777777776655544432 22333333222221111 122223332222222
Q ss_pred c-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007194 263 Y-NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (613)
Q Consensus 263 ~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 332 (613)
+ + ..+..++..+...|++-+|++..+...... ......++++..+.++...-..+++....
T Consensus 87 RL~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~~----~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 87 RLG-----TAYEEIIEVLLSKGQVLEALRYARQYHKVD----SVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred Hhh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcc----cCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 2 245566667777777777777766643221 12234455555555555555555554444
No 262
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.67 E-value=21 Score=36.34 Aligned_cols=60 Identities=12% Similarity=0.125 Sum_probs=31.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007194 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (613)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 262 (613)
.+..++-+.|+.++|.+.+.+|.+.. +...+..+...|+.++...+.+.++..++.+-.+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 34444455566666666666665431 1111223444556666666666666666655443
No 263
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.56 E-value=35 Score=38.67 Aligned_cols=110 Identities=13% Similarity=0.043 Sum_probs=50.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHH
Q 007194 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN----ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 243 (613)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~ 243 (613)
.++.--+.|.+.+|+.++. |+...+. +-..-+.....+++|--.|+..-+ ..-.+.+
T Consensus 914 ~~n~I~kh~Ly~~aL~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-----------lekAl~a 974 (1265)
T KOG1920|consen 914 CKNYIKKHGLYDEALALYK--------PDSEKQKVIYEAYADHLREELMSDEAALMYERCGK-----------LEKALKA 974 (1265)
T ss_pred HHHHHHhcccchhhhheec--------cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc-----------HHHHHHH
Confidence 3333345556666655542 3333332 223333344555555555544321 1223455
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007194 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (613)
Q Consensus 244 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 297 (613)
|-.+|++.+|..+..++.... .--..+-..|+.-+...+++-+|-++..+...
T Consensus 975 ~~~~~dWr~~l~~a~ql~~~~-de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 975 YKECGDWREALSLAAQLSEGK-DELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHhccHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 666666666666655543211 00011124455555566666666665555443
No 264
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=90.53 E-value=13 Score=33.61 Aligned_cols=200 Identities=17% Similarity=0.075 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 007194 235 ITIGALMKACANAGQVDRAREVYKMIHKY-NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID- 312 (613)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~- 312 (613)
.........+...+.+..+...+...... ........+......+...+.+..+.+.+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 44444555555556666665555555431 1233344555555555556666666666666655433321 11111222
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC--CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh
Q 007194 313 FAGHAGKVEAAFEILQEAKNQGI--SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390 (613)
Q Consensus 313 ~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 390 (613)
.+...|+++.|...+........ ......+......+...++.+.+...+..............+..+...+...+..
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 55666777777777766644211 1223333444444566777777777777776543111355666777777777777
Q ss_pred hHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007194 391 PKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 391 ~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (613)
+.|...+...... .|+ ...+..+...+...+..+.+...+.+..+
T Consensus 219 ~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 219 EEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7888777777663 343 33344444444466667777777777665
No 265
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.52 E-value=14 Score=33.86 Aligned_cols=206 Identities=16% Similarity=0.164 Sum_probs=95.3
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007194 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (613)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 173 (613)
.|.-...+|....++++|...+....+. ..-+...|. .. ..++.|.-+.+++... +--+..|+--..+|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-AA------KayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-AA------KAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-HH------HHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 3444455666677777777766655531 111211111 11 2234444455555432 112334555566777
Q ss_pred hcCCHHHHHHHHHHHHhC--CCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCC
Q 007194 174 KAGQVAKAFGAYGIMRSK--NVKPDRV--VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249 (613)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~--g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~ 249 (613)
.+|.++.|-..+++.-+. ++.|+.. .|.--+...-..++...|.++ +...-..+.+...
T Consensus 103 E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el-----------------~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL-----------------YGKCSRVLVRLEK 165 (308)
T ss_pred HhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH-----------------HHHhhhHhhhhHH
Confidence 777777776666654321 2233321 122222222222222222222 2233344555556
Q ss_pred hhHHHHHHHHHHh----cCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHH
Q 007194 250 VDRAREVYKMIHK----YNIKGT-PEVYTIAINCCSQTGDWEFACSVYDDMTKKG---VIPDEVFLSALIDFAGHAGKVE 321 (613)
Q Consensus 250 ~~~A~~~~~~~~~----~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~ 321 (613)
+++|-..|.+-.. ..--++ -..|.+.|-.|.-..++..|.+.++.--+.+ -.-+..+...|+.+|- .|+.+
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E 244 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIE 244 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHH
Confidence 6555544433211 111111 1234455555666667777777777643321 1224566666776663 45666
Q ss_pred HHHHHH
Q 007194 322 AAFEIL 327 (613)
Q Consensus 322 ~A~~~~ 327 (613)
++.+++
T Consensus 245 ~~~kvl 250 (308)
T KOG1585|consen 245 EIKKVL 250 (308)
T ss_pred HHHHHH
Confidence 555444
No 266
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=90.41 E-value=9.9 Score=36.80 Aligned_cols=166 Identities=15% Similarity=0.047 Sum_probs=93.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCcCHHh
Q 007194 271 VYTIAINCCSQTGDWEFACSVYDDMTK-KGVIP---DEVFLSALIDFAGHAGKVEAAFEILQEAKNQG-----ISVGIIS 341 (613)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~ 341 (613)
+|..+..++-+..++.+++.+-..-.. .|..| ......++-.++...+.++++++.|+...+.. ......+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 444455555555555555555444332 12222 11223345556666677888888887765431 1223457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHHHHH-----HHHHHHcCCChhHHHHHHHHHHh----CCCCCC
Q 007194 342 YSSLMGACSNAKNWQKALELYEHMKS----IKLKPTVSTMNA-----LITALCDGDQLPKTMEVLSDMKS----LGLCPN 408 (613)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~~~~~-----li~~~~~~g~~~~A~~l~~~m~~----~g~~p~ 408 (613)
+..|-..|.+..++++|.-+.....+ .++..=..-|.. |.-++...|+...|.+.-++..+ .|=+|.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 78888888888888887766555432 222111122322 34456677887777777766433 332222
Q ss_pred -HHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 007194 409 -TITYSILLVACERKDDVEVGLMLLSQAK 436 (613)
Q Consensus 409 -~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (613)
......+.+.|...|+.+.|..-+++..
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2334556677888899888887777654
No 267
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.37 E-value=6.2 Score=34.71 Aligned_cols=61 Identities=10% Similarity=0.084 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007194 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN--VHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (613)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (613)
.+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+|+.....+++..+.....+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 455566666666666666666666655432222 2334555666666666666666655554
No 268
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.28 E-value=1.1 Score=28.63 Aligned_cols=27 Identities=15% Similarity=0.094 Sum_probs=13.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHc
Q 007194 95 FNMLMSVCASSKDSEGAFQVLRLVQEA 121 (613)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~l~~~m~~~ 121 (613)
|..+...|...|++++|.++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344444455555555555555555544
No 269
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.15 E-value=24 Score=36.04 Aligned_cols=60 Identities=12% Similarity=0.142 Sum_probs=37.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007194 308 SALIDFAGHAGKVEAAFEILQEAKNQGIS-VGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (613)
Q Consensus 308 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (613)
..+..++-+.|+.++|.+.+++|.+.... .+..+...|+.++...+.+.++..++.+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 33444555667777777777777654312 2333556677777777777777777776544
No 270
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.54 E-value=33 Score=36.79 Aligned_cols=301 Identities=13% Similarity=0.107 Sum_probs=166.8
Q ss_pred HcCCCCCHHHHH-----HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH--HHHHHHH-HHHHhC
Q 007194 120 EAGLKADCKLYT-----TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV--AKAFGAY-GIMRSK 191 (613)
Q Consensus 120 ~~g~~~~~~~~~-----~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~--~~A~~~~-~~m~~~ 191 (613)
.-|++.+..-|. .+|+-+...+.+..|+++-..+...-.. ...+|.....-+.+..+. +++++.. +++...
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 456666666554 4567777788888898887776522111 145666666666665322 2333333 333322
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC-----
Q 007194 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD--PDHITIGALMKACANAGQVDRAREVYKMIHKYN----- 264 (613)
Q Consensus 192 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~----- 264 (613)
. .+.++|..+.+-....|+.+-|..+++.=......++ .+..-+...+.-+...|+.+....++-.+.+.-
T Consensus 504 -~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l 581 (829)
T KOG2280|consen 504 -L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSL 581 (829)
T ss_pred -C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence 2 3456788888777788999988888764322111110 111223445556667777777766665554321
Q ss_pred ------CCCCHHHHHHHHH---------HHHhcCCHHHHHHH-HHHHH----HCCCCCCHHHHHHHHHHHHhcCCHH---
Q 007194 265 ------IKGTPEVYTIAIN---------CCSQTGDWEFACSV-YDDMT----KKGVIPDEVFLSALIDFAGHAGKVE--- 321 (613)
Q Consensus 265 ------~~~~~~~~~~li~---------~~~~~g~~~~A~~~-~~~m~----~~~~~p~~~~~~~li~~~~~~g~~~--- 321 (613)
.+.....|.-++. .|-+..+...+-.+ ++... ..+..|+ ......++.+.....
T Consensus 582 ~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ 658 (829)
T KOG2280|consen 582 FMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEA 658 (829)
T ss_pred HHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHH
Confidence 1111122222221 12222222211111 11100 1122333 223333444433311
Q ss_pred H-------HHHHHHHHHHC-CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHH
Q 007194 322 A-------AFEILQEAKNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393 (613)
Q Consensus 322 ~-------A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 393 (613)
+ -+.+.+.+..+ +..-...+.+--+.-+...|+..+|.++-.+.+ -||-..|-.-+.+++..+++++-
T Consensus 659 ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeL 734 (829)
T KOG2280|consen 659 KALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEEL 734 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHH
Confidence 1 12222222222 323344455666667778899999999888777 58888888889999999999887
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 007194 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436 (613)
Q Consensus 394 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (613)
+++-+.+. .+.-|.-...+|.+.|+.++|.+++.+..
T Consensus 735 ekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 735 EKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred HHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 76655443 25667778889999999999998886643
No 271
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=89.50 E-value=43 Score=38.05 Aligned_cols=113 Identities=15% Similarity=0.200 Sum_probs=66.4
Q ss_pred CCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-
Q 007194 302 PDEVFLSALI----DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST- 376 (613)
Q Consensus 302 p~~~~~~~li----~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~- 376 (613)
|+...+..+. +.+.....+++|.-.|...-+ ..-.+.+|-.+|+|++|..+..++.. ..+...
T Consensus 933 ~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~ 1000 (1265)
T KOG1920|consen 933 PDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE---GKDELVI 1000 (1265)
T ss_pred cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHH
Confidence 4444444443 334445666666666654322 12345677788888888888877763 223222
Q ss_pred -HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 007194 377 -MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434 (613)
Q Consensus 377 -~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 434 (613)
--.|+.-+...+++-+|-++..+... .|. . .+..+++...+++|.++...
T Consensus 1001 ~a~~L~s~L~e~~kh~eAa~il~e~~s---d~~-~----av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1001 LAEELVSRLVEQRKHYEAAKILLEYLS---DPE-E----AVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHHHHcccchhHHHHHHHHhc---CHH-H----HHHHHhhHhHHHHHHHHHHh
Confidence 25677888888998888888877654 222 1 22234555566666655543
No 272
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.02 E-value=24 Score=38.14 Aligned_cols=46 Identities=13% Similarity=0.155 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHhCCCCCcccccCCceeeccccCcchHHHHHHHHHHHHH
Q 007194 552 PRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGL 600 (613)
Q Consensus 552 ~~a~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (613)
++| ++...+.+++|..+...+.-+=..+.+++.+.++...-++..|
T Consensus 522 ~~A---L~~i~~L~liP~~~~~V~~~a~~f~~l~~~V~~~lp~lLl~~M 567 (613)
T PF04097_consen 522 EQA---LDIIEKLDLIPLDPSEVRRCAENFRQLDDEVRRNLPDLLLAAM 567 (613)
T ss_dssp HHH---HHHHHHTT-S-S-HHHHHHHHHCGCCS-HHHHTTHHHHHHHHH
T ss_pred HHH---HHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 456 4444557899976655556666788899988887774444443
No 273
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=88.92 E-value=27 Score=35.07 Aligned_cols=400 Identities=11% Similarity=0.084 Sum_probs=231.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC-------C-----------CCHHHHHHHHH
Q 007194 39 GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-------N-----------PTLSTFNMLMS 100 (613)
Q Consensus 39 g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~-----------~~~~~~~~li~ 100 (613)
.+++.....+.+..+.. +....++...+-.+-+.+.+++|.+.|..-. + +|-..=+..+.
T Consensus 59 ~nld~Me~~l~~l~~~~--~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~ 136 (549)
T PF07079_consen 59 NNLDLMEKQLMELRQQF--GKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAH 136 (549)
T ss_pred hhHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHH
Confidence 45555555555555544 4444444444445566788888888775321 1 12223345667
Q ss_pred HHHcCCChHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHHcC--------Ch-------hHHHHHHHHHHHC-----
Q 007194 101 VCASSKDSEGAFQVLRLVQEAGL----KADCKLYTTLITTCAKSG--------KV-------DAMFEVFHEMVNA----- 156 (613)
Q Consensus 101 ~~~~~g~~~~A~~l~~~m~~~g~----~~~~~~~~~li~~~~~~g--------~~-------~~a~~~~~~m~~~----- 156 (613)
.+...|++.++..+++++...=+ .-+..+|+.++-.+++.= .. +.+.-...+|...
T Consensus 137 sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y 216 (549)
T PF07079_consen 137 SLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPY 216 (549)
T ss_pred HHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchH
Confidence 78899999999999998876543 378889998777776541 11 1122222222211
Q ss_pred -CCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHhhCC-CCC-
Q 007194 157 -GIEPNVHTYGALIDGCAKA--GQVAKAFGAYGIMRSKNVKPDRV-VFNALITACGQSGAVDRAFDVLAEMNAEV-HPV- 230 (613)
Q Consensus 157 -g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~- 230 (613)
.+.|-......++....-. .+..--.++++.....-+.|+-. ....|...+.. +.+++..+-+.+.... ..+
T Consensus 217 ~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lk 294 (549)
T PF07079_consen 217 EKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLK 294 (549)
T ss_pred HhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHH
Confidence 2345555555555544322 22333444444444444556543 33344455544 4444444443332210 000
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH-----HHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC
Q 007194 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP-----EVYTIAINCCSQ----TGDWEFACSVYDDMTKKGVI 301 (613)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~ 301 (613)
+.=..++..++....+.++...|.+.+..+.-.+...+. .+-..+-+..+. .-+...=+.+++.....++.
T Consensus 295 e~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD 374 (549)
T PF07079_consen 295 EELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID 374 (549)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc
Confidence 112457888999999999999999988877654321110 112233344432 22344556677777666553
Q ss_pred CCHHHHHHHHHH---HHhcCC-HHHHHHHHHHHHHCCCCcCHHhHHHHH----HHHHh---cCCHHHHHHHHHHHHhCCC
Q 007194 302 PDEVFLSALIDF---AGHAGK-VEAAFEILQEAKNQGISVGIISYSSLM----GACSN---AKNWQKALELYEHMKSIKL 370 (613)
Q Consensus 302 p~~~~~~~li~~---~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li----~~~~~---~g~~~~A~~~~~~m~~~~~ 370 (613)
.......++.+ +-+.|. -++|+.+++.+.+-. +-|...-|.+. ..|.+ ...+.+-.++-+-+.+.|+
T Consensus 375 -rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl 452 (549)
T PF07079_consen 375 -RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGL 452 (549)
T ss_pred -HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 22223333332 333444 788999999887753 33444433332 23332 3445666667677778888
Q ss_pred CCCHH----HHHHHHHH--HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCH
Q 007194 371 KPTVS----TMNALITA--LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444 (613)
Q Consensus 371 ~~~~~----~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~ 444 (613)
.|-.+ .-|.|.++ +..+|++.++.-.-..+.+ +.|++.+|..+.-......++++|..++.. ++|+.
T Consensus 453 ~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~ 525 (549)
T PF07079_consen 453 TPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNE 525 (549)
T ss_pred CcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCch
Confidence 77543 33444443 4568999998877666666 789999999998888999999999999865 56777
Q ss_pred HHHHHHH
Q 007194 445 VMFKCII 451 (613)
Q Consensus 445 ~~~~~li 451 (613)
.++++=+
T Consensus 526 ~~~dskv 532 (549)
T PF07079_consen 526 RMRDSKV 532 (549)
T ss_pred hhHHHHH
Confidence 7777654
No 274
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.45 E-value=4.4 Score=41.77 Aligned_cols=157 Identities=13% Similarity=0.169 Sum_probs=78.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCh
Q 007194 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDS 108 (613)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 108 (613)
+.-|.+++-.|+++.|-.++..+.+. .+..+..+..++|-.++|+.+- +.|| .- .....+.|++
T Consensus 590 vleyqt~vmrrd~~~a~~vLp~I~k~--------~rt~va~Fle~~g~~e~AL~~s---~D~d-~r----Felal~lgrl 653 (794)
T KOG0276|consen 590 VLEYQTLVLRRDLEVADGVLPTIPKE--------IRTKVAHFLESQGMKEQALELS---TDPD-QR----FELALKLGRL 653 (794)
T ss_pred HHHHHHHhhhccccccccccccCchh--------hhhhHHhHhhhccchHhhhhcC---CChh-hh----hhhhhhcCcH
Confidence 33444555666776666655554422 1223334445555555555321 1111 11 1223445666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007194 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (613)
Q Consensus 109 ~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (613)
+.|.++..+.. +..-|..|.++..+.+++..|.+.|..... |..|+-.+...|+.+....+-...
T Consensus 654 ~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~ 718 (794)
T KOG0276|consen 654 DIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLA 718 (794)
T ss_pred HHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHH
Confidence 66666554332 344566666666666666666666655432 445555556666655444444444
Q ss_pred HhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 007194 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222 (613)
Q Consensus 189 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 222 (613)
.+.|. .|.-..+|...|+++++.+++..
T Consensus 719 ~~~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 719 KKQGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred Hhhcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 44431 22223345555666666666544
No 275
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=87.79 E-value=20 Score=32.17 Aligned_cols=178 Identities=17% Similarity=0.108 Sum_probs=103.9
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007194 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327 (613)
Q Consensus 248 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 327 (613)
|-+..|+-=|.+..... +.-+.+||-+.-.+...|+++.|.+.|+...+.++.-+-...|.-|..| -.|++..|.+-+
T Consensus 79 GL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHH
Confidence 44444554455544433 4446789999988999999999999999988876553433333333322 358888888777
Q ss_pred HHHHHCCCCcCHHhHHHHHHHHH--hcCCHHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 007194 328 QEAKNQGISVGIISYSSLMGACS--NAKNWQKALEL-YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404 (613)
Q Consensus 328 ~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~-~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 404 (613)
...-+.+ +.|+. .+| ..|. ..-+..+|..- .++.. +.|..-|...|-.|.-..-.++ .+++++..-
T Consensus 157 ~~fYQ~D-~~DPf--R~L-WLYl~E~k~dP~~A~tnL~qR~~----~~d~e~WG~~iV~~yLgkiS~e--~l~~~~~a~- 225 (297)
T COG4785 157 LAFYQDD-PNDPF--RSL-WLYLNEQKLDPKQAKTNLKQRAE----KSDKEQWGWNIVEFYLGKISEE--TLMERLKAD- 225 (297)
T ss_pred HHHHhcC-CCChH--HHH-HHHHHHhhCCHHHHHHHHHHHHH----hccHhhhhHHHHHHHHhhccHH--HHHHHHHhh-
Confidence 7776654 22332 111 1222 23345555543 33333 3555666665555543222222 234444331
Q ss_pred CCCC-------HHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 007194 405 LCPN-------TITYSILLVACERKDDVEVGLMLLSQAKED 438 (613)
Q Consensus 405 ~~p~-------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (613)
-.-+ ..||--+..-+...|++++|..+|+-.+..
T Consensus 226 a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 226 ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 1211 235666777788899999999999988764
No 276
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.77 E-value=44 Score=36.08 Aligned_cols=151 Identities=10% Similarity=0.090 Sum_probs=84.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCh
Q 007194 31 SYNRLIRQGRISECIDLLEDMERKGLLDM--DKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDS 108 (613)
Q Consensus 31 ~~~~l~~~g~~~~A~~l~~~m~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 108 (613)
.++-|++.+.+++|+..-+..... .+. .......++.-+...|++++|-...-.|...+..-|.--+..++..++.
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQL 439 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhcccccc
Confidence 345588999999999987755433 232 2222233333345567788888887777777777787777777776665
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH------------------HHHCCCCCCHHHHHHHHH
Q 007194 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE------------------MVNAGIEPNVHTYGALID 170 (613)
Q Consensus 109 ~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~------------------m~~~g~~~~~~~~~~li~ 170 (613)
..... -+.......+...|..++..+.. .+...-.++..+ ..+. .-+...-..|+.
T Consensus 440 ~~Ia~---~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se~~~L~e~La~ 513 (846)
T KOG2066|consen 440 TDIAP---YLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN--SESTALLEVLAH 513 (846)
T ss_pred chhhc---cCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh--ccchhHHHHHHH
Confidence 43322 22222212355667766666655 222111111110 0111 112223344777
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 007194 171 GCAKAGQVAKAFGAYGIMR 189 (613)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~ 189 (613)
.|...+++..|++++-..+
T Consensus 514 LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 514 LYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHccChHHHHHHHHhcc
Confidence 7777788888877776665
No 277
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=87.42 E-value=29 Score=33.52 Aligned_cols=129 Identities=18% Similarity=0.273 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHHHHCCC---CcCHHhHHHHHHHHHhcCC--
Q 007194 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGH--A----GKVEAAFEILQEAKNQGI---SVGIISYSSLMGACSNAKN-- 354 (613)
Q Consensus 286 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~--~----g~~~~A~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~-- 354 (613)
++...+++.|.+.|+.-+..+|-+....... . ....+|..+|+.|++... .++...+..|+.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4555666777777776666555543322222 1 124567777777777632 2334445555433 2222
Q ss_pred --HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCC---hhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007194 355 --WQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQ---LPKTMEVLSDMKSLGLCPNTITYSILL 416 (613)
Q Consensus 355 --~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~~~t~~~ll 416 (613)
.+.....|+.+.+.|+.++ ..-+.+-|-++..... ..++.++++.+.+.|+++....|..+.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 3445566666666565443 2233333333332221 335667777777777777666655443
No 278
>PRK09687 putative lyase; Provisional
Probab=87.40 E-value=28 Score=33.34 Aligned_cols=236 Identities=14% Similarity=0.053 Sum_probs=120.1
Q ss_pred CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh----hHHHHHHHHHHHCCCCCCH
Q 007194 87 VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----DAMFEVFHEMVNAGIEPNV 162 (613)
Q Consensus 87 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~g~~~~~ 162 (613)
+.++|.......+.++...|.. .+...+..+.. .+|...-...+.++++.|+. +++...+..+... .++.
T Consensus 32 L~d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~ 105 (280)
T PRK09687 32 LDDHNSLKRISSIRVLQLRGGQ-DVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSA 105 (280)
T ss_pred HhCCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCH
Confidence 3456666666666666666643 33333333432 34566666667777777763 3566666655333 4566
Q ss_pred HHHHHHHHHHHhcCCH-----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHH
Q 007194 163 HTYGALIDGCAKAGQV-----AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237 (613)
Q Consensus 163 ~~~~~li~~~~~~g~~-----~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 237 (613)
.+-...+.++...+.. ..+...+..... .++..+=...+.++++.++ .++...+-.+.. .+|..+-
T Consensus 106 ~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~-----d~~~~VR 176 (280)
T PRK09687 106 CVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK-----DPNGDVR 176 (280)
T ss_pred HHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc-----CCCHHHH
Confidence 6666666666554321 223333333322 2244444455666666665 345555555543 2343444
Q ss_pred HHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007194 238 GALMKACANAG-QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (613)
Q Consensus 238 ~~ll~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 316 (613)
...+.++.+.+ +...+...+..+.. .++..+....+.++.+.++. .|...+-...+.+. .....+.++..
T Consensus 177 ~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~-----~~~~a~~ALg~ 247 (280)
T PRK09687 177 NWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT-----VGDLIIEAAGE 247 (280)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc-----hHHHHHHHHHh
Confidence 44444555442 12344444444442 33455666666667666663 45555554444422 12345566666
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHH
Q 007194 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (613)
Q Consensus 317 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (613)
.|.. +|...+..+.+.. +|..+-...+.++
T Consensus 248 ig~~-~a~p~L~~l~~~~--~d~~v~~~a~~a~ 277 (280)
T PRK09687 248 LGDK-TLLPVLDTLLYKF--DDNEIITKAIDKL 277 (280)
T ss_pred cCCH-hHHHHHHHHHhhC--CChhHHHHHHHHH
Confidence 6663 5666666665532 3544444444433
No 279
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.21 E-value=1.4 Score=26.67 Aligned_cols=24 Identities=21% Similarity=0.133 Sum_probs=13.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 007194 165 YGALIDGCAKAGQVAKAFGAYGIM 188 (613)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m 188 (613)
|+.|...|.+.|++++|+.+|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455556666666666666666553
No 280
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.91 E-value=7.8 Score=29.62 Aligned_cols=62 Identities=19% Similarity=0.277 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHH
Q 007194 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK-EDGVIPNLVMFKCIIGM 453 (613)
Q Consensus 390 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~-~~g~~p~~~~~~~li~~ 453 (613)
.-++.+-++.+....+.|++....+.+.||.+..++..|.++++-++ +.| .+...|..+++-
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lqe 85 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQE 85 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHHH
Confidence 33566667777777789999999999999999999999999999877 433 255578887765
No 281
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.34 E-value=0.98 Score=27.04 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=13.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHH
Q 007194 266 KGTPEVYTIAINCCSQTGDWEFAC 289 (613)
Q Consensus 266 ~~~~~~~~~li~~~~~~g~~~~A~ 289 (613)
|.+..+|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 445555666666666666655553
No 282
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=86.20 E-value=52 Score=35.31 Aligned_cols=91 Identities=12% Similarity=0.110 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHh
Q 007194 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (613)
Q Consensus 272 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 351 (613)
|..-+..+..+++.. ....+.+...-+..+.....-++..|.+.|-.+.|.++.+.+-..-. ...-|..-+..+.+
T Consensus 375 W~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~r 450 (566)
T PF07575_consen 375 WQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIR 450 (566)
T ss_dssp HHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHH
Confidence 444444444333222 34444444433334666677788888888888888888876654421 12345555666667
Q ss_pred cCCHHHHHHHHHHHH
Q 007194 352 AKNWQKALELYEHMK 366 (613)
Q Consensus 352 ~g~~~~A~~~~~~m~ 366 (613)
+|+......+-+.+.
T Consensus 451 a~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 451 AGDYSLVTRIADRLL 465 (566)
T ss_dssp ---------------
T ss_pred CCCHHHHHHHHHHHH
Confidence 777655555544444
No 283
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.12 E-value=9.1 Score=33.69 Aligned_cols=27 Identities=30% Similarity=0.399 Sum_probs=13.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007194 165 YGALIDGCAKAGQVAKAFGAYGIMRSK 191 (613)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (613)
+..+...|++.|+.+.|++.|.++.+.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~ 65 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDY 65 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 444444455555555555555544443
No 284
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=85.88 E-value=1.9 Score=26.11 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=12.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 007194 272 YTIAINCCSQTGDWEFACSVYDD 294 (613)
Q Consensus 272 ~~~li~~~~~~g~~~~A~~~~~~ 294 (613)
|+.|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555555555555555555555
No 285
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.79 E-value=22 Score=30.67 Aligned_cols=19 Identities=11% Similarity=0.263 Sum_probs=8.9
Q ss_pred hcCCHHHHHHHHHHHHhCC
Q 007194 174 KAGQVAKAFGAYGIMRSKN 192 (613)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g 192 (613)
+.+..++|+.-|..+.+.|
T Consensus 70 ~~~k~d~Alaaf~~lektg 88 (221)
T COG4649 70 QENKTDDALAAFTDLEKTG 88 (221)
T ss_pred HcCCchHHHHHHHHHHhcC
Confidence 3444455555555554443
No 286
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=85.49 E-value=27 Score=31.39 Aligned_cols=202 Identities=17% Similarity=0.134 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 007194 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277 (613)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 277 (613)
..+......+...+....+...+...... .........+......+...+....+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALEL-ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 34444444555555555555554444320 0112233334444444455555555555555555433221 111222222
Q ss_pred -HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCC
Q 007194 278 -CCSQTGDWEFACSVYDDMTKKGV--IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354 (613)
Q Consensus 278 -~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 354 (613)
.+...|+++.|...+.+...... ......+......+...++.+.+...+..............+..+...+...++
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 56666666666666666644211 112233333333355566777777777777665311135667777777777777
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 007194 355 WQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (613)
Q Consensus 355 ~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 403 (613)
.+.|...+....... |+ ...+..+...+...+..+++...+.+....
T Consensus 218 ~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888887776542 33 334444444444666778888777777663
No 287
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.35 E-value=13 Score=35.24 Aligned_cols=105 Identities=11% Similarity=0.094 Sum_probs=62.0
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHH
Q 007194 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH-PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270 (613)
Q Consensus 192 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 270 (613)
|.+....+...++..-....+++.+...+-.++.... ...|+. +-.+.+..+.+ -++++++.++..=.+.|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccchh
Confidence 4444555555555555555667777776666654210 011111 11122222222 25667777777777778888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007194 271 VYTIAINCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 298 (613)
+++.+|+.+.+.+++.+|..+.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888777777666544
No 288
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=85.20 E-value=32 Score=31.91 Aligned_cols=171 Identities=8% Similarity=-0.002 Sum_probs=94.6
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---
Q 007194 244 CANAGQVDRAREVYKMIHKYNIKG---TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA--- 317 (613)
Q Consensus 244 ~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--- 317 (613)
-.+.|++++|.+.|+.+..+. +. ...+--.++-++.+.+++++|+..+++..+.-+.....-|..-|.+.+.-
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i 122 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQI 122 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccC
Confidence 446677777777777776543 22 23445556667777788888887777766654332233344444444421
Q ss_pred ----CCHH---HHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-H-HHHHHHHHcCC
Q 007194 318 ----GKVE---AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST-M-NALITALCDGD 388 (613)
Q Consensus 318 ----g~~~---~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~-~~li~~~~~~g 388 (613)
.+.. .|..-|+.+++. |=...-...|......+. |... + ..+..-|.+.|
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~r---------------yPnS~Ya~dA~~~i~~~~------d~LA~~Em~IaryY~kr~ 181 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQR---------------YPNSRYAPDAKARIVKLN------DALAGHEMAIARYYLKRG 181 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHH---------------CCCCcchhhHHHHHHHHH------HHHHHHHHHHHHHHHHhc
Confidence 1111 222222322222 211222222322222222 1111 1 23456788999
Q ss_pred ChhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007194 389 QLPKTMEVLSDMKSLGLCPNT---ITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 389 ~~~~A~~l~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (613)
.+..|..-+++|++. .+-+. ..+-.+..+|...|..++|...-+-+..
T Consensus 182 ~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 182 AYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred ChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 999999999999986 33233 3455666888888888888776655544
No 289
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=85.08 E-value=24 Score=30.49 Aligned_cols=134 Identities=14% Similarity=0.231 Sum_probs=67.5
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007194 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (613)
Q Consensus 113 ~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 192 (613)
+.++.+.+.+++|+...+..+++.+.+.|++..-.++ .+.++-+|.......+-.+. +....+.++=-+|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 4445556667777777777777777777765544433 33343444443333322222 1222333333333322
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007194 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (613)
Q Consensus 193 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 262 (613)
=...+..++..+...|++-+|.++....... +......++.+..+.++...-..+|+-..+
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~------~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV------DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc------ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0023455666777777777777777654221 111223345555555555544444444443
No 290
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.05 E-value=14 Score=35.12 Aligned_cols=99 Identities=11% Similarity=0.096 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007194 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQG---ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379 (613)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 379 (613)
...+...++..-....+++.+...+-.+.... ..++. +-.+.+..+.+ -+.++++.++..=.+.|+-||..+++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccchhhHHH
Confidence 44455555555455566666666666655431 11111 11222222222 245577777766667777777777777
Q ss_pred HHHHHHcCCChhHHHHHHHHHHhC
Q 007194 380 LITALCDGDQLPKTMEVLSDMKSL 403 (613)
Q Consensus 380 li~~~~~~g~~~~A~~l~~~m~~~ 403 (613)
+|+.+.+.+++.+|.++...|...
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHH
Confidence 777777777777777776665543
No 291
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.02 E-value=31 Score=31.67 Aligned_cols=25 Identities=12% Similarity=0.050 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHH
Q 007194 236 TIGALMKACANAGQVDRAREVYKMI 260 (613)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~ 260 (613)
.|+--..+|..+|.++.|-..+++.
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHH
Confidence 3444555666666666665555544
No 292
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.86 E-value=22 Score=29.92 Aligned_cols=51 Identities=12% Similarity=-0.014 Sum_probs=36.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCC
Q 007194 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN 89 (613)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 89 (613)
..++++++..+++.|.-.. |.......+-...+...|++++|.++|+.+..
T Consensus 22 ~~~d~~D~e~lLdALrvLr--P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLR--PNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred hcCCHHHHHHHHHHHHHhC--CCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 5778888888888877655 55555555555566677778888888887764
No 293
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.38 E-value=62 Score=34.60 Aligned_cols=181 Identities=14% Similarity=0.099 Sum_probs=100.1
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHH--H-HHHcCChhHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcC-
Q 007194 108 SEGAFQVLRLVQEAGLKADCKLYTTLIT--T-CAKSGKVDAMFEVFHEMVN-------AGIEPNVHTYGALIDGCAKAG- 176 (613)
Q Consensus 108 ~~~A~~l~~~m~~~g~~~~~~~~~~li~--~-~~~~g~~~~a~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~g- 176 (613)
...|.+.++...+.|. ........++. + +....+.+.|...|..... .| +.....-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 4567888887777662 11122222222 2 3355688888888888765 44 2334555666666532
Q ss_pred ----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHH----hc
Q 007194 177 ----QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ-SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA----NA 247 (613)
Q Consensus 177 ----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~----~~ 247 (613)
+.+.|+.+|.+.-+.| .|+....-..+..... ..+...|.++|......+ . ++ .+-.+..+|. ..
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~-~~--A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--H-IL--AIYRLALCYELGLGVE 377 (552)
T ss_pred CccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--C-hH--HHHHHHHHHHhCCCcC
Confidence 5667888888877776 4555544433333333 245678888888776542 1 22 2222222221 22
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007194 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300 (613)
Q Consensus 248 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 300 (613)
.+...|..++++..++| .|....-...+..+.. +.++.+.-.+..+...|.
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 35777888888887777 3322222222333333 666666666666665554
No 294
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=84.31 E-value=40 Score=32.29 Aligned_cols=161 Identities=14% Similarity=0.108 Sum_probs=87.4
Q ss_pred HcCCChHHHHHHHHHHHHcC--CCCCH------HHHHHHHHHHHHcCChhHHHHHHHHHHHC--------CCCCCH----
Q 007194 103 ASSKDSEGAFQVLRLVQEAG--LKADC------KLYTTLITTCAKSGKVDAMFEVFHEMVNA--------GIEPNV---- 162 (613)
Q Consensus 103 ~~~g~~~~A~~l~~~m~~~g--~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------g~~~~~---- 162 (613)
.+.|+.+.|..++.+....- ..|+. ..|+.-...+.+..+++.|..++++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 34566666666666655422 12221 23443344443333777776666554322 122332
Q ss_pred -HHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHH
Q 007194 163 -HTYGALIDGCAKAGQVA---KAFGAYGIMRSKNVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237 (613)
Q Consensus 163 -~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 237 (613)
.+...++.+|...+..+ +|..+++.+... .|+ ..++..-+..+.+.++.+++.+.+.+|.... .-....+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e--~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~---~~~e~~~ 158 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESE--YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV---DHSESNF 158 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc---ccccchH
Confidence 45677788888777654 556666666544 233 4455556677777899999999999998752 2122334
Q ss_pred HHHHHHH---HhcCChhHHHHHHHHHHhcCCCCCH
Q 007194 238 GALMKAC---ANAGQVDRAREVYKMIHKYNIKGTP 269 (613)
Q Consensus 238 ~~ll~~~---~~~g~~~~A~~~~~~~~~~~~~~~~ 269 (613)
...+..+ .... ...+...++.+....+.|..
T Consensus 159 ~~~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 159 DSILHHIKQLAEKS-PELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHHHhhC-cHHHHHHHHHHHHHHhCCCh
Confidence 4444433 3332 34555555555444344443
No 295
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=84.14 E-value=2.3 Score=25.14 Aligned_cols=26 Identities=12% Similarity=0.017 Sum_probs=11.2
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHh
Q 007194 377 MNALITALCDGDQLPKTMEVLSDMKS 402 (613)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (613)
|..+...|...|++++|+..|++.++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 34444444444444444444444443
No 296
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.99 E-value=37 Score=30.97 Aligned_cols=24 Identities=21% Similarity=0.520 Sum_probs=11.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH
Q 007194 351 NAKNWQKALELYEHMKSIKLKPTV 374 (613)
Q Consensus 351 ~~g~~~~A~~~~~~m~~~~~~~~~ 374 (613)
..+++.+|+++|+++....+..+.
T Consensus 166 ~leqY~~Ai~iyeqva~~s~~n~L 189 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARSSLDNNL 189 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhccchH
Confidence 344555555555555544333333
No 297
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=82.13 E-value=3.7 Score=24.22 Aligned_cols=28 Identities=29% Similarity=0.113 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007194 410 ITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 410 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (613)
.+|..+...+...|++++|...|+++++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4678888999999999999999999987
No 298
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=81.58 E-value=23 Score=27.53 Aligned_cols=61 Identities=20% Similarity=0.294 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHH
Q 007194 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-DGVIPNLVMFKCIIGMC 454 (613)
Q Consensus 392 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~g~~p~~~~~~~li~~~ 454 (613)
+..+-++.+....+.|++....+.|.||.+..++..|.++++-+.. .|.. ...|..++.-+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lqEl 89 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQEL 89 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHHHH
Confidence 5556666677777899999999999999999999999999998874 4433 33888887654
No 299
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.19 E-value=18 Score=32.24 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=10.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHH
Q 007194 268 TPEVYTIAINCCSQTGDWEFA 288 (613)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~A 288 (613)
|+..+.+|++.|.+.|+++.|
T Consensus 177 n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CHHHHHHHHHHHHHhcchhhh
Confidence 444444444444444444443
No 300
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=80.82 E-value=2.4 Score=25.34 Aligned_cols=20 Identities=20% Similarity=0.317 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHhcCCHHHH
Q 007194 162 VHTYGALIDGCAKAGQVAKA 181 (613)
Q Consensus 162 ~~~~~~li~~~~~~g~~~~A 181 (613)
..+|+.+...|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 33344444444444444333
No 301
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=80.52 E-value=36 Score=29.13 Aligned_cols=18 Identities=17% Similarity=0.329 Sum_probs=8.4
Q ss_pred HHcCChhHHHHHHHHHHH
Q 007194 138 AKSGKVDAMFEVFHEMVN 155 (613)
Q Consensus 138 ~~~g~~~~a~~~~~~m~~ 155 (613)
...|++.+|..+|+++..
T Consensus 55 i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 55 IVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHhCCHHHHHHHHHHHhc
Confidence 344444444444444433
No 302
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.87 E-value=90 Score=33.38 Aligned_cols=178 Identities=17% Similarity=0.173 Sum_probs=106.1
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHH----H-HHhcCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHcc
Q 007194 143 VDAMFEVFHEMVNAGIEPNVHTYGALID----G-CAKAGQVAKAFGAYGIMRS-------KNVKPDRVVFNALITACGQS 210 (613)
Q Consensus 143 ~~~a~~~~~~m~~~g~~~~~~~~~~li~----~-~~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~ 210 (613)
...+.++++.....| +...-..+.. + +....+++.|+.+|+.+.+ .| +......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 457888888887765 3333333322 2 4466789999999998876 44 333455566666664
Q ss_pred C-----CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----
Q 007194 211 G-----AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN-AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS---- 280 (613)
Q Consensus 211 g-----~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~---- 280 (613)
. +.+.|..++......+ .|+.......+..... ..+...|.++|....+.|.. .++-.+..+|.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g---~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG---NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLG 375 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC---CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCC
Confidence 2 6677888888876542 3554443333322222 24577899999998888842 22222222222
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007194 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (613)
Q Consensus 281 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 334 (613)
...+.+.|...+.+.-+.|. |-...-...+..+.. ++.+.+.-.+..+...+
T Consensus 376 v~r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred cCCCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 23467888888888888873 332222333334444 67777776666666655
No 303
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=79.42 E-value=86 Score=32.88 Aligned_cols=128 Identities=9% Similarity=0.143 Sum_probs=89.6
Q ss_pred hhHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHH
Q 007194 27 EQLHSYNRLIRQG----RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLM 99 (613)
Q Consensus 27 ~~~~~~~~l~~~g----~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li 99 (613)
.....|..|+..+ ..+.++..++.+...- |.-..+...+...-.+.|..+.+.++|++.. +-++..|...+
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky--Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSKY--PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYL 120 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3455677777433 4456666777777654 6666666666666677888999999999754 45666777766
Q ss_pred HHHH-cCCChHHHHHHHHHHHHc-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 007194 100 SVCA-SSKDSEGAFQVLRLVQEA-GLK-ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (613)
Q Consensus 100 ~~~~-~~g~~~~A~~l~~~m~~~-g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (613)
.-+. ..|+.+.....|+..... |.. .....|...|..-..++++.....++++.++.
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 5543 567888888888887754 211 23456778888878888999999999998863
No 304
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=79.23 E-value=4.4 Score=23.75 Aligned_cols=23 Identities=13% Similarity=0.042 Sum_probs=9.3
Q ss_pred HHHHHHHcCCChhHHHHHHHHHH
Q 007194 379 ALITALCDGDQLPKTMEVLSDMK 401 (613)
Q Consensus 379 ~li~~~~~~g~~~~A~~l~~~m~ 401 (613)
.+...|.+.|++++|++.|++..
T Consensus 6 ~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 6 YLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Confidence 33344444444444444444433
No 305
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=79.14 E-value=16 Score=28.01 Aligned_cols=45 Identities=13% Similarity=0.177 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007194 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (613)
Q Consensus 287 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 331 (613)
++.+-++.+...+..|+.....+.+++|.+.+++..|..+|+-++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334444444444455555555555555555555555555555443
No 306
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=78.88 E-value=28 Score=26.94 Aligned_cols=85 Identities=11% Similarity=0.166 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007194 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (613)
Q Consensus 108 ~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (613)
.++|..+-+.+...+-. ...+--+-+..+...|++++|..+.+.+. .||...|-+|-. .+.|..+.+..-+.+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 45555555555443211 11122222334456677777777666553 567777666544 355666666666666
Q ss_pred HHhCCCCCCHHHH
Q 007194 188 MRSKNVKPDRVVF 200 (613)
Q Consensus 188 m~~~g~~p~~~~~ 200 (613)
|..+| .|....|
T Consensus 94 la~sg-~p~lq~F 105 (115)
T TIGR02508 94 LAASG-DPRLQTF 105 (115)
T ss_pred HHhCC-CHHHHHH
Confidence 66665 4444444
No 307
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.78 E-value=1.1e+02 Score=33.65 Aligned_cols=139 Identities=14% Similarity=0.108 Sum_probs=72.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChH
Q 007194 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSE 109 (613)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 109 (613)
+.|-+.|++++|.+-+-+-.. ...+...+ +.+.......+-..+++.+. -.+...-..|+..|.+.++.+
T Consensus 376 d~Ly~Kgdf~~A~~qYI~tI~--~le~s~Vi-----~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~ 448 (933)
T KOG2114|consen 376 DYLYGKGDFDEATDQYIETIG--FLEPSEVI-----KKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVE 448 (933)
T ss_pred HHHHhcCCHHHHHHHHHHHcc--cCChHHHH-----HHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchH
Confidence 445589999999888766543 32333222 22223333444444444332 223334456788888888877
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007194 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (613)
Q Consensus 110 ~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (613)
+-.+..+.-. .|.. .+-....+..+.+.+-.++|.-+-.+.. .+......++ -..+++++|++.+..+.
T Consensus 449 kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~-----~he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 449 KLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFK-----KHEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhc-----cCHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 7665554333 2211 1113345555666666666665544432 1333333333 34566777777766653
No 308
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=78.70 E-value=39 Score=28.48 Aligned_cols=49 Identities=14% Similarity=0.244 Sum_probs=28.1
Q ss_pred cCCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 007194 104 SSKDSEGAFQVLRLVQEAGLKAD---CKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (613)
Q Consensus 104 ~~g~~~~A~~l~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (613)
..++++++..+++.|.-. .|+ ..++.. -.+...|++++|.++|+++.+.
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFDG--WLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhHH--HHHHHcCCHHHHHHHHHhhhcc
Confidence 356667777776666543 332 223322 2345667777777777777654
No 309
>PRK11619 lytic murein transglycosylase; Provisional
Probab=78.12 E-value=1.1e+02 Score=33.38 Aligned_cols=51 Identities=4% Similarity=-0.104 Sum_probs=33.9
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 007194 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434 (613)
Q Consensus 381 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 434 (613)
+..+...|...+|...+..+.+. .+......+.......|..+.+......
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~ 464 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIA 464 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhh
Confidence 45566778888888888887763 3444555555556677777777665543
No 310
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.01 E-value=37 Score=30.08 Aligned_cols=127 Identities=10% Similarity=0.072 Sum_probs=82.2
Q ss_pred hHHHHHHHH---hcCCHHHHHHHHHHHHHcCC-CCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC-CCCHHHHHHH----
Q 007194 28 QLHSYNRLI---RQGRISECIDLLEDMERKGL-LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-NPTLSTFNML---- 98 (613)
Q Consensus 28 ~~~~~~~l~---~~g~~~~A~~l~~~m~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~l---- 98 (613)
....|..++ +.+.. +.....+++...+. ..........+.+.....+++++|..-++... .+....+..+
T Consensus 53 AS~~Y~~~i~~~~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lR 131 (207)
T COG2976 53 ASAQYQNAIKAVQAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALR 131 (207)
T ss_pred HHHHHHHHHHHHhcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHH
Confidence 344444444 44555 66666677776652 12333344445667788889999998888654 3433444443
Q ss_pred -HHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 007194 99 -MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157 (613)
Q Consensus 99 -i~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 157 (613)
.+.....|.+++|+.+++.....+. .......-.+.+...|+-++|+.-|.+....+
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 3557788999999999887765432 22233445678889999999999999888764
No 311
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.98 E-value=33 Score=35.81 Aligned_cols=98 Identities=17% Similarity=0.202 Sum_probs=44.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 007194 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253 (613)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A 253 (613)
+.|+.+.|.++..+.. +..-|..|-++....+++..|.+.|..... |..|+-.+...|+-+..
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-----------~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD-----------LGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc-----------hhhhhhhhhhcCChhHH
Confidence 4455555555443332 334555555555555555555555544321 33344444445554443
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007194 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294 (613)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 294 (613)
..+-....+.|. .|.-.-+|...|+++++.+++..
T Consensus 712 ~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 712 AVLASLAKKQGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 333333333331 22222334445555555554443
No 312
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=77.46 E-value=5.4 Score=24.68 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=12.1
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHH
Q 007194 376 TMNALITALCDGDQLPKTMEVLSDM 400 (613)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m 400 (613)
+++.|...|...|++++|..++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 4444555555555555555555444
No 313
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=76.90 E-value=6.3 Score=24.35 Aligned_cols=26 Identities=12% Similarity=0.119 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007194 164 TYGALIDGCAKAGQVAKAFGAYGIMR 189 (613)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (613)
+++.|...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 45555555555555555555555543
No 314
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=76.07 E-value=7.3 Score=22.74 Aligned_cols=28 Identities=18% Similarity=0.096 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007194 410 ITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 410 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (613)
..+..+...+...|++++|++.+++.++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3566778889999999999999999887
No 315
>PRK09687 putative lyase; Provisional
Probab=75.83 E-value=76 Score=30.37 Aligned_cols=137 Identities=11% Similarity=-0.044 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCcCHHhHHHHH
Q 007194 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG-KVEAAFEILQEAKNQGISVGIISYSSLM 346 (613)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li 346 (613)
+..+-...+.++.+.++ +++...+-.+... +|...-...+.++.+.+ ....+...+..+.. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 34445555555555554 3444554444442 23333333334444332 12344444444442 23455555666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 007194 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420 (613)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 420 (613)
.++.+.|+. .|...+-...+. ++ .....+.++...|.. +|+..+..+.+. .||...-...+.+|.
T Consensus 214 ~aLg~~~~~-~av~~Li~~L~~---~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 214 IGLALRKDK-RVLSVLIKELKK---GT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHccCCh-hHHHHHHHHHcC---Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 666666663 344444444332 22 123455566666654 466666665542 345555555454443
No 316
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=75.50 E-value=0.93 Score=38.32 Aligned_cols=84 Identities=18% Similarity=0.203 Sum_probs=52.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC
Q 007194 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424 (613)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 424 (613)
++..+.+.+..+....+++.+...+...+....+.++..|++.+..++..++++. .+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 4555666667777777777777655445567777778888877776777766651 122333456667777777
Q ss_pred HHHHHHHHHHH
Q 007194 425 VEVGLMLLSQA 435 (613)
Q Consensus 425 ~~~a~~~~~~~ 435 (613)
++++..++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 77777666554
No 317
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=75.46 E-value=75 Score=30.13 Aligned_cols=83 Identities=13% Similarity=-0.026 Sum_probs=45.3
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH------cC-----ChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007194 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK------SG-----KVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (613)
Q Consensus 102 ~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~------~g-----~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 170 (613)
..+-=..+.-.....+..+...+....++.+.+.++.. .| ...+|+++|.-+..+. .-..+-+.++.
T Consensus 97 l~KPvt~ekLnraIdr~~k~ve~~~eee~~~~iscfgg~ev~~rqg~~vkWis~KA~ELFayLv~hk--gk~v~~~~~ie 174 (361)
T COG3947 97 LPKPVTPEKLNRAIDRRLKRVELTAEEESGTQISCFGGTEVVLRQGQQVKWISRKALELFAYLVEHK--GKEVTSWEAIE 174 (361)
T ss_pred ccCCCCHHHHHHHHHHHhccccccchhccCeeeEeccceeeeccCCceeeehhhHHHHHHHHHHHhc--CCcccHhHHHH
Confidence 33333344444444444433333345566666666652 12 2357889998888753 23344555677
Q ss_pred HHHhcCCHHHHHHHHH
Q 007194 171 GCAKAGQVAKAFGAYG 186 (613)
Q Consensus 171 ~~~~~g~~~~A~~~~~ 186 (613)
++....+..+|...+.
T Consensus 175 ~lwpe~D~kka~s~lh 190 (361)
T COG3947 175 ALWPEKDEKKASSLLH 190 (361)
T ss_pred HHccccchhhHHHHHH
Confidence 7777777666655544
No 318
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.89 E-value=1.4e+02 Score=33.02 Aligned_cols=177 Identities=11% Similarity=0.121 Sum_probs=95.0
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCch-HHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcC
Q 007194 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMD-KVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASS 105 (613)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 105 (613)
..-..|+.++..|+++.|+++-..- |.. .++...-+.++.+.+++..|.+.|.++ ..+|..+.--+...
T Consensus 360 E~R~vWk~yLd~g~y~kAL~~ar~~------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t----~~~FEEVaLKFl~~ 429 (911)
T KOG2034|consen 360 EARDVWKTYLDKGEFDKALEIARTR------PDALETVLLKQADFLFQDKEYLRAAEIYAET----LSSFEEVALKFLEI 429 (911)
T ss_pred chHHHHHHHHhcchHHHHHHhccCC------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh----hhhHHHHHHHHHhc
Confidence 4556799999999999999875432 111 122233345667778899999988877 34455555555566
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHH-----HHHHHH-HcCChh----HHHHHHHHH--------HH-CCCCCCHHHHH
Q 007194 106 KDSEGAFQVLRLVQEAGLKADCKLYTT-----LITTCA-KSGKVD----AMFEVFHEM--------VN-AGIEPNVHTYG 166 (613)
Q Consensus 106 g~~~~A~~l~~~m~~~g~~~~~~~~~~-----li~~~~-~~g~~~----~a~~~~~~m--------~~-~g~~~~~~~~~ 166 (613)
++.+ ++..|-.=+-..++|...+-.. ++..|. +.++.+ ++.+-++.- .. .....+.....
T Consensus 430 ~~~~-~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nre 508 (911)
T KOG2034|consen 430 NQER-ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRE 508 (911)
T ss_pred CCHH-HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHH
Confidence 5555 4443322222233444333222 222222 223222 222222111 10 00012222334
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 007194 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (613)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 223 (613)
+.-......|+.+....+-.-|. -|..++.-+.+.+.+++|++++..-
T Consensus 509 tv~~l~~~~~~~e~ll~fA~l~~---------d~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 509 TVYQLLASHGRQEELLQFANLIK---------DYEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred HHHHHHHHccCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44445556677776665544443 3556777788888888888887653
No 319
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=72.76 E-value=1.6 Score=36.89 Aligned_cols=53 Identities=15% Similarity=0.164 Sum_probs=23.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007194 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186 (613)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 186 (613)
++.+.+.+.++....+++.+...+...+....+.++..|++.++.+...++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33344444444444444444443323344444555555555544444444443
No 320
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=72.61 E-value=43 Score=25.98 Aligned_cols=79 Identities=11% Similarity=0.042 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 007194 40 RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQ 119 (613)
Q Consensus 40 ~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 119 (613)
..+||-.+-+.+...+. ....+...-+.....+|++++|..+.+..+.||...|-++-. .+.|-.+.+..-+.+|.
T Consensus 20 cHqEA~tIAdwL~~~~~--~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 20 CHQEANTIADWLHLKGE--SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLA 95 (115)
T ss_pred HHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 45666666666655541 122221112222334566666666666666666666655533 23444444444444555
Q ss_pred HcC
Q 007194 120 EAG 122 (613)
Q Consensus 120 ~~g 122 (613)
..|
T Consensus 96 ~sg 98 (115)
T TIGR02508 96 ASG 98 (115)
T ss_pred hCC
Confidence 444
No 321
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=71.72 E-value=94 Score=29.56 Aligned_cols=116 Identities=16% Similarity=0.219 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHHC-CCCcCHHhHHHHHHHHHhcCCHHHHH
Q 007194 284 DWEFACSVYDDMTK-KGVIPDEVFLSALIDFAGH-AG-KVEAAFEILQEAKNQ-GISVGIISYSSLMGACSNAKNWQKAL 359 (613)
Q Consensus 284 ~~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~~~-~g-~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~ 359 (613)
...+|+++|+.... ..+.-|..+...+++.... .+ ....-.++.+.+... +-.++..+...++..+++.+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34456666653221 2233355555666555443 11 222222333333322 23566667777777777777777777
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 007194 360 ELYEHMKSI-KLKPTVSTMNALITALCDGDQLPKTMEVLSD 399 (613)
Q Consensus 360 ~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 399 (613)
++++..... +...|...|...|....+.|+..-..++.++
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 777765543 4455667777777777777776655555443
No 322
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.10 E-value=75 Score=28.21 Aligned_cols=89 Identities=17% Similarity=0.133 Sum_probs=49.6
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHH-----HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 007194 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG-----ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 278 (613)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~-----~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 278 (613)
...+...+++++|..-++..... +.| ..+. .|.......|.+++|...++.....+.. ......-.+.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~----t~D-e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDi 168 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ----TKD-ENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDI 168 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc----chh-HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhH
Confidence 34566677777777777665532 112 1222 2334555667777777777666554321 1122333455
Q ss_pred HHhcCCHHHHHHHHHHHHHCC
Q 007194 279 CSQTGDWEFACSVYDDMTKKG 299 (613)
Q Consensus 279 ~~~~g~~~~A~~~~~~m~~~~ 299 (613)
+...|+-++|..-|......+
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHcCchHHHHHHHHHHHHcc
Confidence 666677777777777666654
No 323
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=70.57 E-value=39 Score=31.74 Aligned_cols=87 Identities=9% Similarity=0.010 Sum_probs=38.0
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh--
Q 007194 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ-- 281 (613)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-- 281 (613)
|.+++..+++.++....-+--.....++|.+.- .-|-.|.+.+++..+.++-..-.+.--.-+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIle--LCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILE--LCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHH--HHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 455555566655554433332221223333222 2233356666655555554433322111122235555444443
Q ss_pred ---cCCHHHHHHHH
Q 007194 282 ---TGDWEFACSVY 292 (613)
Q Consensus 282 ---~g~~~~A~~~~ 292 (613)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 36666665554
No 324
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=69.73 E-value=37 Score=30.65 Aligned_cols=54 Identities=13% Similarity=0.091 Sum_probs=23.1
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 007194 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260 (613)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 260 (613)
++.+.+.+.+.+|+....+-.+.. +.|..+-..+++.+|-.|++++|..-++..
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkak---Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAK---PTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC---CccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 334444444455544444333221 223333334444455555555554444433
No 325
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=69.37 E-value=52 Score=25.65 Aligned_cols=46 Identities=13% Similarity=0.190 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007194 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (613)
Q Consensus 287 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 332 (613)
+..+-++.+...++.|+.....+.+.+|.+.+++..|..+|+-++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444555555556666666666666666666666666655543
No 326
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=69.31 E-value=70 Score=28.01 Aligned_cols=59 Identities=17% Similarity=0.174 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcC----C-------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007194 392 KTMEVLSDMKSLGLCPNT-ITYSILLVACERKD----D-------VEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (613)
Q Consensus 392 ~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g----~-------~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 454 (613)
+|+.-|++.+. +.|+. .++..+-.++...+ + +++|...|++..+ .+|+..+|+.-+.+.
T Consensus 53 dAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 53 DAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 34444444444 46654 45555555544322 2 3445555555554 578888888887774
No 327
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=68.70 E-value=70 Score=26.91 Aligned_cols=80 Identities=14% Similarity=0.265 Sum_probs=46.7
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHhhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007194 377 MNALITALCDGDQLPKTMEVLSDMKSLG-----LCPNTITYSILLVACERKDD-VEVGLMLLSQAKEDGVIPNLVMFKCI 450 (613)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-----~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~~~~~g~~p~~~~~~~l 450 (613)
.|+++.-....+.+.-.+.+++.+..-. -.-+..+|.+++.+.++..- ---+..+|..+.+.+.+++...|.++
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4455555455555555555554443210 02344567777777766555 34456677777776777777888888
Q ss_pred HHHHHh
Q 007194 451 IGMCSR 456 (613)
Q Consensus 451 i~~~~~ 456 (613)
|..+.|
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 777654
No 328
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.50 E-value=1e+02 Score=28.77 Aligned_cols=153 Identities=12% Similarity=0.066 Sum_probs=87.1
Q ss_pred hcCCHHHHHHHHHHHHHcCC--CCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC---------CCCHHHHHHHHHHHHcC
Q 007194 37 RQGRISECIDLLEDMERKGL--LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---------NPTLSTFNMLMSVCASS 105 (613)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---------~~~~~~~~~li~~~~~~ 105 (613)
+...+++|+.-|++..+... -.|.--..--+++...+.+.+++....|.++. .-+..+.|++++..+.+
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 66799999999998876431 13444444445556666777777777776653 23455677777776666
Q ss_pred CChHHHHHHHHHHHHc-CCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHHCCC----CC-------CHHHHHHHH
Q 007194 106 KDSEGAFQVLRLVQEA-GLKADC----KLYTTLITTCAKSGKVDAMFEVFHEMVNAGI----EP-------NVHTYGALI 169 (613)
Q Consensus 106 g~~~~A~~l~~~m~~~-g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~----~~-------~~~~~~~li 169 (613)
.+.+.-...++.-.+. .-..+. .|-+.|...|...+.+.+..+++.++.+..- +. =...|..=|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 6655554444432211 000111 1224456666666666666666666643210 11 123555666
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 007194 170 DGCAKAGQVAKAFGAYGIMR 189 (613)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~ 189 (613)
.+|....+-.....+|++..
T Consensus 199 QmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred hhhhhhcccHHHHHHHHHHH
Confidence 66666666666666666554
No 329
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=68.20 E-value=38 Score=30.57 Aligned_cols=56 Identities=13% Similarity=0.031 Sum_probs=29.8
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 007194 97 MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153 (613)
Q Consensus 97 ~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 153 (613)
..++.+.+.+++.+|+...+.-++.. +.|...-..+++.+|-.|++++|..-++-.
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 34445555556666666655555443 334444555566666666666665444433
No 330
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=68.19 E-value=8.2 Score=22.58 Aligned_cols=23 Identities=9% Similarity=0.005 Sum_probs=9.8
Q ss_pred HHHHHHHHcCCChhHHHHHHHHH
Q 007194 378 NALITALCDGDQLPKTMEVLSDM 400 (613)
Q Consensus 378 ~~li~~~~~~g~~~~A~~l~~~m 400 (613)
..+...|.+.|++++|.+.|++.
T Consensus 5 ~~lg~~y~~~~~~~~A~~~~~~a 27 (34)
T PF13181_consen 5 YNLGKIYEQLGDYEEALEYFEKA 27 (34)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 33334444444444444444443
No 331
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=65.87 E-value=81 Score=26.56 Aligned_cols=82 Identities=13% Similarity=0.202 Sum_probs=54.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHcCCC-hhHHHHHHHHHHhCCCCCCHHHHHH
Q 007194 341 SYSSLMGACSNAKNWQKALELYEHMKSIK-----LKPTVSTMNALITALCDGDQ-LPKTMEVLSDMKSLGLCPNTITYSI 414 (613)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ 414 (613)
..|.++.-....++..-...+++.+.... -..+..+|.+++.+..+..- ---+..+|.-|.+.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 34566665566666666666655553211 02455678888888866665 3356777888888778888888999
Q ss_pred HHHHHhhc
Q 007194 415 LLVACERK 422 (613)
Q Consensus 415 ll~a~~~~ 422 (613)
++.+|.+-
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 98887665
No 332
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=65.48 E-value=10 Score=21.79 Aligned_cols=20 Identities=15% Similarity=0.116 Sum_probs=8.8
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 007194 170 DGCAKAGQVAKAFGAYGIMR 189 (613)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~ 189 (613)
.++.+.|++++|.+.|+++.
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHH
Confidence 33344444444444444443
No 333
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=65.15 E-value=74 Score=28.37 Aligned_cols=91 Identities=12% Similarity=0.043 Sum_probs=42.7
Q ss_pred HccCCHHHHHHHHHHHhhCCCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 007194 208 GQSGAVDRAFDVLAEMNAEVHPVDP--DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285 (613)
Q Consensus 208 ~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 285 (613)
...|++++|..-|............ -.+.|..-..++.+.+.++.|+.-..+..+.+ +....+...-..+|.+..++
T Consensus 106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhhH
Confidence 3445555555555554432110000 01223333344555566666666555555554 11112222223456666666
Q ss_pred HHHHHHHHHHHHCC
Q 007194 286 EFACSVYDDMTKKG 299 (613)
Q Consensus 286 ~~A~~~~~~m~~~~ 299 (613)
++|++=|+.+++..
T Consensus 185 eealeDyKki~E~d 198 (271)
T KOG4234|consen 185 EEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHhC
Confidence 67766666666653
No 334
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=64.92 E-value=39 Score=27.73 Aligned_cols=57 Identities=9% Similarity=0.150 Sum_probs=29.5
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHH
Q 007194 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85 (613)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 85 (613)
..+..|-.+++.-+ .+.++|..|..+|+....+.++...+..+...|++.+|.++|.
T Consensus 67 RylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 67 RYLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44445544443222 6666666666666554445555445555555555555555554
No 335
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=64.61 E-value=1e+02 Score=31.58 Aligned_cols=105 Identities=14% Similarity=0.014 Sum_probs=59.1
Q ss_pred HHhcCCHHHHHHHHHHHHh---CCCCCC-----HHHHHHHHHHHHcCCChhHHHHHHHHHH-------hCCCCCCH----
Q 007194 349 CSNAKNWQKALELYEHMKS---IKLKPT-----VSTMNALITALCDGDQLPKTMEVLSDMK-------SLGLCPNT---- 409 (613)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~---~~~~~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~-------~~g~~p~~---- 409 (613)
+.-.|++.+|.+++...-- .|...+ -..||.|...+.+.|.+.-+..+|.+.. ..|++|..
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 3456777777776654321 111111 1234555555556666666666655544 24555532
Q ss_pred -------HHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007194 410 -------ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (613)
Q Consensus 410 -------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~ 455 (613)
.+|+.- -.+.+.|++-.|.+.|.+..+. +..++..|-.|-.+|.
T Consensus 330 s~nks~eilYNcG-~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 330 SQNKSMEILYNCG-LLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred hcccchhhHHhhh-HHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 233332 2466788888888888777653 5667777777777664
No 336
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=64.18 E-value=21 Score=34.30 Aligned_cols=52 Identities=19% Similarity=0.020 Sum_probs=27.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 007194 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364 (613)
Q Consensus 312 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 364 (613)
.-|.+.|.+++|++.|....... +-|++++..-..+|.+...+..|..=...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~ 156 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEA 156 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHH
Confidence 34555666666666665544432 22555555555556665555544443333
No 337
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=63.88 E-value=1e+02 Score=27.03 Aligned_cols=14 Identities=21% Similarity=0.425 Sum_probs=6.5
Q ss_pred CCCHHHHHHHHHHH
Q 007194 159 EPNVHTYGALIDGC 172 (613)
Q Consensus 159 ~~~~~~~~~li~~~ 172 (613)
+|+..+|+.-+...
T Consensus 110 ~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 110 DPNNELYRKSLEMA 123 (186)
T ss_dssp -TT-HHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 45555555555544
No 338
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=63.88 E-value=1.3e+02 Score=28.39 Aligned_cols=128 Identities=13% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHH----HHHCCCCcCHHhHH
Q 007194 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDE-------VFLSALIDFAGHAGKVEAAFEILQE----AKNQGISVGIISYS 343 (613)
Q Consensus 275 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~----~~~~~~~~~~~~~~ 343 (613)
+.+-..+.+++++|+..+.++...|+..|. .+...+...|...|+...-.+.... |.+..-+....+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHH-----HHHHHHcCCChhHHHHHHHHHHh
Q 007194 344 SLMGACSNAKN-WQKALELYEHMKSIKLKPTVSTMNA-----LITALCDGDQLPKTMEVLSDMKS 402 (613)
Q Consensus 344 ~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~-----li~~~~~~g~~~~A~~l~~~m~~ 402 (613)
+|+..+....+ ++.-..+.....+...+.+...... +|..+.+.|.+.+|+.+...+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ 153 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLH 153 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
No 339
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=63.70 E-value=17 Score=23.33 Aligned_cols=23 Identities=30% Similarity=0.200 Sum_probs=12.9
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHH
Q 007194 415 LLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 415 ll~a~~~~g~~~~a~~~~~~~~~ 437 (613)
+..+|...|+.+.|+.++++++.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555666666665555554
No 340
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=63.47 E-value=1.2e+02 Score=27.57 Aligned_cols=67 Identities=12% Similarity=0.082 Sum_probs=42.9
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 007194 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (613)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (613)
+.-+..||.+.--+...|+++.|.+.|+...+.+..-+-...|.-|..| --|++.-|.+-|...-+.
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHHHHHhc
Confidence 3345678888777888888888888888887765333333333333333 457777777766666554
No 341
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=63.45 E-value=51 Score=26.77 Aligned_cols=61 Identities=16% Similarity=0.273 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007194 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453 (613)
Q Consensus 392 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 453 (613)
|..+-++.+..-.+.|++.....-|.||.+..++..|.++|+-++.. +.+.-.+|-.+++-
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~e 127 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVKE 127 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHHH
Confidence 34455566666778999999999999999999999999999887742 34444467777654
No 342
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=63.09 E-value=73 Score=25.09 Aligned_cols=80 Identities=11% Similarity=0.102 Sum_probs=41.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007194 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185 (613)
Q Consensus 106 g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 185 (613)
...++|..+.+.+...+- ....+--+-+..+.+.|++++|.. . ......||...|-+|-. .+.|-.+++...+
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl--~--~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l 92 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALL--L--PQCHCYPDLEPWAALCA--WKLGLASALESRL 92 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHH--H--HTTS--GGGHHHHHHHH--HHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHH--h--cccCCCccHHHHHHHHH--HhhccHHHHHHHH
Confidence 345677777777666542 222233333445567777777721 1 11112566666665543 4667777777777
Q ss_pred HHHHhCC
Q 007194 186 GIMRSKN 192 (613)
Q Consensus 186 ~~m~~~g 192 (613)
.++..+|
T Consensus 93 ~rla~~g 99 (116)
T PF09477_consen 93 TRLASSG 99 (116)
T ss_dssp HHHCT-S
T ss_pred HHHHhCC
Confidence 7666655
No 343
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=62.38 E-value=13 Score=20.48 Aligned_cols=17 Identities=18% Similarity=-0.021 Sum_probs=7.0
Q ss_pred HHHHHhcCCHHHHHHHH
Q 007194 346 MGACSNAKNWQKALELY 362 (613)
Q Consensus 346 i~~~~~~g~~~~A~~~~ 362 (613)
...+...|++++|..++
T Consensus 8 a~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 8 ARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHcCCHHHHHHHH
Confidence 33344444444444433
No 344
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=61.60 E-value=24 Score=20.45 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007194 271 VYTIAINCCSQTGDWEFACSVYDDMTK 297 (613)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 297 (613)
+|..+...|.+.|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555555555555555555555443
No 345
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=61.22 E-value=1.5e+02 Score=28.18 Aligned_cols=70 Identities=10% Similarity=0.063 Sum_probs=48.7
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHH-----HcCCCCCHHHH
Q 007194 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAK-----EDGVIPNLVMF 447 (613)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~-----~~g~~p~~~~~ 447 (613)
+++.....|..+|.+.+|.++-+..+.- .| +...+-.++..++..|+--.+..-++++. +.|+..+..++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltl--dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTL--DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhc--ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 3445566788889999999988888763 44 66677788888888888777766666553 23665554443
No 346
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=60.74 E-value=1.1e+02 Score=28.95 Aligned_cols=87 Identities=6% Similarity=-0.058 Sum_probs=39.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----
Q 007194 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD---- 386 (613)
Q Consensus 311 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~---- 386 (613)
|.+++..+++.+++...-+-.+..-+..+.+.-.-|-.|+|.|......++-..-.+..-..+...|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 4455555555555443322222211122233333334466666665555555544432222233345555544433
Q ss_pred -CCChhHHHHHH
Q 007194 387 -GDQLPKTMEVL 397 (613)
Q Consensus 387 -~g~~~~A~~l~ 397 (613)
.|.+++|.++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 46666666555
No 347
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=60.09 E-value=21 Score=22.91 Aligned_cols=21 Identities=10% Similarity=-0.002 Sum_probs=9.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 007194 169 IDGCAKAGQVAKAFGAYGIMR 189 (613)
Q Consensus 169 i~~~~~~g~~~~A~~~~~~m~ 189 (613)
..+|...|+.+.|.+++++..
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHH
Confidence 344444444444444444444
No 348
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=59.82 E-value=2.6e+02 Score=30.39 Aligned_cols=190 Identities=17% Similarity=0.207 Sum_probs=100.8
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHh-hhHHHHHHHHHHHhCC----CCCHH-----HH
Q 007194 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDM--DKVYHARFFNVCK-SQKAIKEAFRFFKLVP----NPTLS-----TF 95 (613)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~--~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~----~~~~~-----~~ 95 (613)
.+..|..|| ..|+..++-+.+....++ ...++..++.++. ...++++|..++.+.. .++.. .-
T Consensus 29 ~l~~Y~kLI-----~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~ 103 (608)
T PF10345_consen 29 QLKQYYKLI-----ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQ 103 (608)
T ss_pred hHHHHHHHH-----HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 344444444 356777777764332232 2333444444443 4456888888887642 22111 12
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcC----CCCCHHHHHHH-HHHHHHcCChhHHHHHHHHHHHCC---CCCCHHHHHH
Q 007194 96 NMLMSVCASSKDSEGAFQVLRLVQEAG----LKADCKLYTTL-ITTCAKSGKVDAMFEVFHEMVNAG---IEPNVHTYGA 167 (613)
Q Consensus 96 ~~li~~~~~~g~~~~A~~l~~~m~~~g----~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~~~ 167 (613)
..++..+.+.+... |...++...+.- ..+-...|..+ +..+...++...|.+.++.+...- ..|-..++-.
T Consensus 104 ~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~ 182 (608)
T PF10345_consen 104 FLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLAS 182 (608)
T ss_pred HHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHH
Confidence 24455666665555 888887766431 12223334443 333333478888888888776432 2444555555
Q ss_pred HHHHHH--hcCCHHHHHHHHHHHHhCC---------CCCCHHHHHHHHHHHH--ccCCHHHHHHHHHHH
Q 007194 168 LIDGCA--KAGQVAKAFGAYGIMRSKN---------VKPDRVVFNALITACG--QSGAVDRAFDVLAEM 223 (613)
Q Consensus 168 li~~~~--~~g~~~~A~~~~~~m~~~g---------~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m 223 (613)
++.+.. +.+..+++.+..+++.... ..|-..+|..+++.++ ..|+++.+.+.++++
T Consensus 183 l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 183 LSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555544 3455666777766663321 1334556766666544 456666665554443
No 349
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.60 E-value=3.1e+02 Score=30.93 Aligned_cols=55 Identities=20% Similarity=0.198 Sum_probs=35.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHH----HHHH-HHHHhhhHHHHHHHHHHHhCC
Q 007194 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVY----HARF-FNVCKSQKAIKEAFRFFKLVP 88 (613)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~----~~~l-~~~~~~~~~~~~A~~~~~~~~ 88 (613)
...|++..++++|+.+-+.....+ |..... +... +-....++++++|.+.|.++.
T Consensus 314 i~~lL~~k~fe~ai~L~e~~~~~~--p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~ 373 (877)
T KOG2063|consen 314 IQDLLQEKSFEEAISLAEILDSPN--PKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSE 373 (877)
T ss_pred HHHHHHhhhHHHHHHHHhccCCCC--hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 345678888999999887766654 322221 1111 112345788999999998875
No 350
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=58.07 E-value=2.4e+02 Score=29.33 Aligned_cols=181 Identities=12% Similarity=0.097 Sum_probs=124.4
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007194 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (613)
Q Consensus 90 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 169 (613)
-|....-+++..+..+.+..-...+..+|..-| .+--.|..++..|... ..++-..+++++.+..+. |++.-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 456677788899999999999999999999865 4567788899999888 567788899988877543 455555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHH
Q 007194 170 DGCAKAGQVAKAFGAYGIMRSKNVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244 (613)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~ 244 (613)
.-|-+ ++-+.+...|.+...+=++. -...|.-+...- ..+.+...++...+... .|...-.+.+.-+-.-|
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~-lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTK-LGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHh-hccchHHHHHHHHHHHh
Confidence 65555 88888888888876542211 122455554322 24566666776666543 34444455666666778
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 007194 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279 (613)
Q Consensus 245 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 279 (613)
....++.+|++++..+.+.+ ..|..+...++..+
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 88899999999999888876 44545555555443
No 351
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=57.66 E-value=68 Score=31.06 Aligned_cols=48 Identities=17% Similarity=0.086 Sum_probs=20.7
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007194 137 CAKSGKVDAMFEVFHEMVNAGIEP-NVHTYGALIDGCAKAGQVAKAFGAYG 186 (613)
Q Consensus 137 ~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~ 186 (613)
|.+.|.+++|+..|..-... .| |.+++..-..+|.+...+..|..-..
T Consensus 107 yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~ 155 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCE 155 (536)
T ss_pred hhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHH
Confidence 34444444444444443322 22 44444444444444444444443333
No 352
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=57.64 E-value=2e+02 Score=28.35 Aligned_cols=63 Identities=14% Similarity=0.160 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007194 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP---DEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (613)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 332 (613)
.+|..+...+.+.|+++.|...+..+...+..+ +....-.-....-..|+..+|+..++...+
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555555555555555555555554432110 111112222233344555555555555444
No 353
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=57.39 E-value=1.8e+02 Score=27.84 Aligned_cols=171 Identities=15% Similarity=0.169 Sum_probs=77.7
Q ss_pred CCHHHHHHHHH-HHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHH
Q 007194 160 PNVHTYGALID-GCAKAGQ-VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237 (613)
Q Consensus 160 ~~~~~~~~li~-~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 237 (613)
|+..+++.|.. .+.+.|= ..-|.++|...... ...+.++..+.+.+.-+.-+++ ++|+..+-
T Consensus 163 ~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~E------k~i~~lis~Lrkg~md~rLmef----------fPpnkrs~ 226 (412)
T KOG2297|consen 163 LPATVLQSLLNDNLVKEGIALSFAVKLFKEWLVE------KDINDLISSLRKGKMDDRLMEF----------FPPNKRSV 226 (412)
T ss_pred CCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhh------ccHHHHHHHHHhcChHhHHHHh----------cCCcchhH
Confidence 34444444443 2333332 33456667666532 2345566666554444333322 25555555
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCCH----HHHHHHHH
Q 007194 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD-DMTKKGVIPDE----VFLSALID 312 (613)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~~~~p~~----~~~~~li~ 312 (613)
......+...|--+-..-.-.++..-. -...-..|.+-..+...+++.....+ +|.+.++ |+. ..|+.+++
T Consensus 227 E~Fak~Ft~agL~elvey~~~q~~~~a---~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMs 302 (412)
T KOG2297|consen 227 EHFAKYFTDAGLKELVEYHRNQQSEGA---RKELQKELQEQVSEEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMS 302 (412)
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhH
Confidence 444444444443221111111110000 00112223333344455555555544 4555544 454 35777776
Q ss_pred HHHhcCCHH-HHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHH
Q 007194 313 FAGHAGKVE-AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359 (613)
Q Consensus 313 ~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 359 (613)
+-.-+.+-+ -|.+.++. ..+|.-|+.+++..|+.+...
T Consensus 303 aveWnKkeelva~qalrh---------lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 303 AVEWNKKEELVAEQALRH---------LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhchHHHHHHHHHHHH---------HHhhhHHHHHHhcCChHHHHH
Confidence 543332211 12222222 456888889999888876543
No 354
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=56.81 E-value=2e+02 Score=28.17 Aligned_cols=77 Identities=10% Similarity=0.068 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc---cCCHHHHHHHH
Q 007194 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ---SGAVDRAFDVL 220 (613)
Q Consensus 144 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~~~ 220 (613)
+.-+.++++..+.. +.+...+..+|..+.+..+.+...+.++++.... +-+...|...|..... .-.++....+|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 34455666655553 3455566666677777667777777777776652 2245556555544332 12344444444
Q ss_pred HH
Q 007194 221 AE 222 (613)
Q Consensus 221 ~~ 222 (613)
.+
T Consensus 126 ~~ 127 (321)
T PF08424_consen 126 EK 127 (321)
T ss_pred HH
Confidence 44
No 355
>PHA02875 ankyrin repeat protein; Provisional
Probab=56.14 E-value=2.4e+02 Score=28.75 Aligned_cols=12 Identities=17% Similarity=0.230 Sum_probs=5.1
Q ss_pred HHHhcCCHHHHH
Q 007194 171 GCAKAGQVAKAF 182 (613)
Q Consensus 171 ~~~~~g~~~~A~ 182 (613)
..++.|+.+.+.
T Consensus 74 ~A~~~g~~~~v~ 85 (413)
T PHA02875 74 DAVEEGDVKAVE 85 (413)
T ss_pred HHHHCCCHHHHH
Confidence 334445444433
No 356
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=56.04 E-value=47 Score=22.31 Aligned_cols=36 Identities=11% Similarity=0.055 Sum_probs=20.2
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007194 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452 (613)
Q Consensus 415 ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~ 452 (613)
+.-++.+.|++++|++..+.+++ ++|+..-...|-.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHH
Confidence 33456667777777777766666 4566555444443
No 357
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=54.92 E-value=1.6e+02 Score=26.39 Aligned_cols=61 Identities=15% Similarity=0.221 Sum_probs=32.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHH
Q 007194 346 MGACSNAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410 (613)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 410 (613)
..++.+.+.++.|+.--....+.+ |+ .....--..+|.+...+++|++-+.++.+. .|...
T Consensus 141 aaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek~ek~eealeDyKki~E~--dPs~~ 202 (271)
T KOG4234|consen 141 AAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEKMEKYEEALEDYKKILES--DPSRR 202 (271)
T ss_pred HHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--CcchH
Confidence 344555666666666555555433 21 112222234566667777777777777663 45443
No 358
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=53.95 E-value=94 Score=23.46 Aligned_cols=14 Identities=14% Similarity=0.107 Sum_probs=5.8
Q ss_pred CCHHHHHHHHHHHH
Q 007194 283 GDWEFACSVYDDMT 296 (613)
Q Consensus 283 g~~~~A~~~~~~m~ 296 (613)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 34444444444443
No 359
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=53.44 E-value=2.1e+02 Score=27.33 Aligned_cols=61 Identities=11% Similarity=0.120 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007194 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKY-NIKGTPEVYTIAINCCSQTGDWEFACSV 291 (613)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~ 291 (613)
.++..+...++..+++.+++..-.++++..... +...|...|..+|....+.|+..-..++
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki 260 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI 260 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
Confidence 344445555555555555555555555444333 2333445555555555555555443333
No 360
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.66 E-value=2e+02 Score=26.95 Aligned_cols=117 Identities=14% Similarity=0.147 Sum_probs=51.6
Q ss_pred ChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC--CCCHHHHHHHHHHHHccCCH
Q 007194 142 KVDAMFEVFHEMVNAGIEPNV---HTYGALIDGCAKAGQVAKAFGAYGIMRSK---NV--KPDRVVFNALITACGQSGAV 213 (613)
Q Consensus 142 ~~~~a~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~--~p~~~~~~~li~~~~~~g~~ 213 (613)
.+++|+.-|++..+..-+.-. ...-.+|..+.+.+++++....|.++..- .+ .-+..+.|+++.--..+.+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 455555555555543211111 22334455566666666666666555321 01 11233445555544444443
Q ss_pred HHHHHHHHH-------HhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007194 214 DRAFDVLAE-------MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (613)
Q Consensus 214 ~~A~~~~~~-------m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 262 (613)
+-...+++. ......-+ .|-+-|...|...+++.+..++++++..
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWF----KTNtKLgkl~fd~~e~~kl~KIlkqLh~ 173 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWF----KTNTKLGKLYFDRGEYTKLQKILKQLHQ 173 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeee----eccchHhhhheeHHHHHHHHHHHHHHHH
Confidence 333332222 21111111 1223455556666666666666665543
No 361
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.47 E-value=4.1e+02 Score=30.09 Aligned_cols=110 Identities=13% Similarity=0.183 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCC--CCC-CHHHHHHHHHHHHhcC-----------------CHHHHHHHHHH-
Q 007194 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAG--IEP-NVHTYGALIDGCAKAG-----------------QVAKAFGAYGI- 187 (613)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~-~~~~~~~li~~~~~~g-----------------~~~~A~~~~~~- 187 (613)
-|..|+..|...|+.++|++++.+..... ..+ -..-+-.+++-..+.+ +.+.+.++|..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 36677777777777788877777766521 000 0111222333333333 33344444433
Q ss_pred --HHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHh
Q 007194 188 --MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246 (613)
Q Consensus 188 --m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~ 246 (613)
-....+.++ -+-.|......+-+...++.+.... -.++....+.++..|++
T Consensus 586 ~~~~~~sis~~------~Vl~~l~~~~~~l~I~YLE~li~~~--~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRD------DVLNYLKSKEPKLLIPYLEHLISDN--RLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHH------HHHHHhhhhCcchhHHHHHHHhHhc--cccchHHHHHHHHHHHH
Confidence 001111111 2234566677778888888887642 24456666777777765
No 362
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=50.33 E-value=20 Score=29.45 Aligned_cols=31 Identities=26% Similarity=0.524 Sum_probs=21.8
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007194 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (613)
Q Consensus 139 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 171 (613)
+.|.-.+|..+|.+|+..|-+||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 345566778888888888877764 6776654
No 363
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=49.89 E-value=3.4e+02 Score=28.74 Aligned_cols=365 Identities=10% Similarity=0.024 Sum_probs=188.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHH-HHhhhHHHHHHHHHHHhCC------CCCHHHHHHHHHHHHcCCChH
Q 007194 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFKLVP------NPTLSTFNMLMSVCASSKDSE 109 (613)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~g~~~ 109 (613)
+-|..+.+..+|++-...= |........+.. .+...|+.+.-.+.|+... -.+...|...|.--...+++.
T Consensus 91 klg~~~~s~~Vfergv~ai--p~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k 168 (577)
T KOG1258|consen 91 KLGNAENSVKVFERGVQAI--PLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWK 168 (577)
T ss_pred HhhhHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHH
Confidence 6789999999999988643 444443333333 3445666777777787643 234557888888888889999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---c------CChhHHHHHHHHHHHC---C-CCCCHHHHHHHHHHHHh-c
Q 007194 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAK---S------GKVDAMFEVFHEMVNA---G-IEPNVHTYGALIDGCAK-A 175 (613)
Q Consensus 110 ~A~~l~~~m~~~g~~~~~~~~~~li~~~~~---~------g~~~~a~~~~~~m~~~---g-~~~~~~~~~~li~~~~~-~ 175 (613)
....++++.++. | ...|+....-|.+ . ...+++.++-...... + ..+....+..-+.--.. .
T Consensus 169 ~v~~iyeRilei---P-~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s 244 (577)
T KOG1258|consen 169 RVANIYERILEI---P-LHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPS 244 (577)
T ss_pred HHHHHHHHHHhh---h-hhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCcc
Confidence 999999998863 1 2223333222221 1 1222222222221110 0 00111111111111000 0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC-----CCCCCCHHHHHHHHHHHHhcCCh
Q 007194 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV-----HPVDPDHITIGALMKACANAGQV 250 (613)
Q Consensus 176 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~~~ll~~~~~~g~~ 250 (613)
+..+++.....+. ....-.++-......+..-.|+.-.... .-..++..+|..-+.--.+.|+.
T Consensus 245 ~~l~~~~~~l~~~-----------~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~ 313 (577)
T KOG1258|consen 245 KSLTEEKTILKRI-----------VSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDF 313 (577)
T ss_pred chhhHHHHHHHHH-----------HHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccH
Confidence 1111111111111 0111112222333333344444433210 01123456677777777778888
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007194 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI--PDEVFLSALIDFAGHAGKVEAAFEILQ 328 (613)
Q Consensus 251 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~ 328 (613)
+...-+|+...-.- ..-...|-..+.-.-..|+.+-|..++..-.+-.++ |....+.+.+ +-..|+.+.|..+++
T Consensus 314 ~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq 390 (577)
T KOG1258|consen 314 SRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQ 390 (577)
T ss_pred HHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHH
Confidence 88888877664331 222345555555555568877777777665544332 2223333322 334578888888888
Q ss_pred HHHHCCCCcCHHhHHHHHHHHHhcCCHHHHH---HHHHHHHhCCCCCCHHHHHHHHHH-----HHcCCChhHHHHHHHHH
Q 007194 329 EAKNQGISVGIISYSSLMGACSNAKNWQKAL---ELYEHMKSIKLKPTVSTMNALITA-----LCDGDQLPKTMEVLSDM 400 (613)
Q Consensus 329 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~---~~~~~m~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~l~~~m 400 (613)
.+...- +--...-..-+....+.|+.+.+. .++....... -+......+.-- +.-.++.+.|..++.++
T Consensus 391 ~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~--~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~ 467 (577)
T KOG1258|consen 391 RIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK--ENNGILEKLYVKFARLRYKIREDADLARIILLEA 467 (577)
T ss_pred HHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc--cCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 887763 222222233344556677777776 4444443322 222222222222 22357788888888888
Q ss_pred HhCCCCCCHHHHHHHHHHHhhcCCH
Q 007194 401 KSLGLCPNTITYSILLVACERKDDV 425 (613)
Q Consensus 401 ~~~g~~p~~~t~~~ll~a~~~~g~~ 425 (613)
.+. ++++...|..++.-+...+..
T Consensus 468 ~~~-~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 468 NDI-LPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred hhc-CCccHHHHHHHHHHHHhCCcc
Confidence 875 566777788888777666633
No 364
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.62 E-value=2.9e+02 Score=27.80 Aligned_cols=170 Identities=11% Similarity=0.038 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 007194 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVI--PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (613)
Q Consensus 270 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 347 (613)
..+.-+.+.|..+|+++.|++.|.+....-.. -....|..+|..-...|++.....+..+..+..
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~------------- 217 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTP------------- 217 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCc-------------
Confidence 45677888888888888888888885543111 012233444444445566666555555544331
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC------CCCCCHHHHHHHHHHHhh
Q 007194 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL------GLCPNTITYSILLVACER 421 (613)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~~~t~~~ll~a~~~ 421 (613)
.+ +.... ..+.+-..++..+.....+ .+..|.+.|-..... =+.|..++....+.|.+-
T Consensus 218 ---------~~---~~~~~-q~v~~kl~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAt 282 (466)
T KOG0686|consen 218 ---------DA---NENLA-QEVPAKLKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALAT 282 (466)
T ss_pred ---------hh---hhhHH-HhcCcchHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhcc
Confidence 00 00000 0112334444444444333 555555544332211 134655555555666555
Q ss_pred cCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhhHHHHHHhhhh
Q 007194 422 KDDVEVGLMLLSQAK-EDGVIPNLVMFKCIIGMCSRRYEKARTLNEH 467 (613)
Q Consensus 422 ~g~~~~a~~~~~~~~-~~g~~p~~~~~~~li~~~~~~~~~a~~~~~~ 467 (613)
.++-+--..+...-. +.-.+..+....++.+-|.++|..|.++.+.
T Consensus 283 fdr~~Lk~~vi~n~~Fk~flel~Pqlr~il~~fy~sky~~cl~~L~~ 329 (466)
T KOG0686|consen 283 FDRQDLKLNVIKNESFKLFLELEPQLREILFKFYSSKYASCLELLRE 329 (466)
T ss_pred CCHHHHHHHHHcchhhhhHHhcChHHHHHHHHHhhhhHHHHHHHHHH
Confidence 544333222222111 1112345556666777777777777776554
No 365
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=49.59 E-value=88 Score=23.62 Aligned_cols=33 Identities=9% Similarity=0.080 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCh
Q 007194 75 KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDS 108 (613)
Q Consensus 75 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 108 (613)
|+.+.|.++++.++ ..+..|..+++++...|.-
T Consensus 50 g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~ 82 (88)
T cd08819 50 GNESGARELLKRIV-QKEGWFSKFLQALRETEHH 82 (88)
T ss_pred CcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCch
Confidence 44455555555544 4444444455554444443
No 366
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=49.01 E-value=86 Score=23.86 Aligned_cols=36 Identities=19% Similarity=0.354 Sum_probs=25.8
Q ss_pred ccccChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 007194 20 NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKG 55 (613)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~~ 55 (613)
..|.++.........++..|++++|++.+-++.+.+
T Consensus 17 ~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 17 ANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 456677777777777888888888888888888775
No 367
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=48.93 E-value=1.3e+02 Score=24.64 Aligned_cols=47 Identities=13% Similarity=0.215 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007194 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (613)
Q Consensus 287 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 333 (613)
+..+-++.+...++.|+.......+.+|.+.+++..|..+|+-++..
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34555566666677777777777777777777777777777766543
No 368
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=48.77 E-value=61 Score=23.91 Aligned_cols=46 Identities=7% Similarity=-0.054 Sum_probs=26.2
Q ss_pred cCCChhHHHHHHHHHHhCCCCC-CH-HHHHHHHHHHhhcCCHHHHHHH
Q 007194 386 DGDQLPKTMEVLSDMKSLGLCP-NT-ITYSILLVACERKDDVEVGLML 431 (613)
Q Consensus 386 ~~g~~~~A~~l~~~m~~~g~~p-~~-~t~~~ll~a~~~~g~~~~a~~~ 431 (613)
...+.++|+..|+...+.-..| +. .++..++.+++..|++.+.+.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777776665542222 21 3455666677777776665543
No 369
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=48.63 E-value=93 Score=27.72 Aligned_cols=33 Identities=21% Similarity=0.193 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007194 405 LCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 405 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (613)
..|+..+|..++.++...|+.++|.+...++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 478888888888888888888888888888776
No 370
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=48.44 E-value=66 Score=21.01 Aligned_cols=29 Identities=7% Similarity=0.120 Sum_probs=12.6
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 007194 387 GDQLPKTMEVLSDMKSLGLCPNTITYSIL 415 (613)
Q Consensus 387 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 415 (613)
.|-.+++..++++|.+.|+.-+...|..+
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 33344444444444444444444444433
No 371
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=47.68 E-value=2.1e+02 Score=25.68 Aligned_cols=74 Identities=8% Similarity=-0.011 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHccCCHHHHH
Q 007194 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK---NVKPDRVVFNALITACGQSGAVDRAF 217 (613)
Q Consensus 143 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A~ 217 (613)
-+.|.+.|-.+...+.--++.....|...|. ..+.+++..++.+..+. +-.+|+..+.+|.+.+.+.|+.+.|.
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3567777777766664455555556655555 55677777777766543 33567777777777777777777664
No 372
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=47.57 E-value=2.8e+02 Score=28.65 Aligned_cols=104 Identities=14% Similarity=0.095 Sum_probs=62.0
Q ss_pred hcCCHHHHHHHHHHHH---HCCCCcCH-----HhHHHHHHHHHhcCCHHHHHHHHHHHHh-------CCCCCC-------
Q 007194 316 HAGKVEAAFEILQEAK---NQGISVGI-----ISYSSLMGACSNAKNWQKALELYEHMKS-------IKLKPT------- 373 (613)
Q Consensus 316 ~~g~~~~A~~~~~~~~---~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~~~~~~------- 373 (613)
-.|++.+|.+++...- ..|...++ ..+|.|.-.+.+.|.+..+..+|....+ .|++|.
T Consensus 252 ~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~ 331 (696)
T KOG2471|consen 252 AHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQ 331 (696)
T ss_pred HhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhc
Confidence 4577777777665431 11211121 1235555555566666666666655442 343332
Q ss_pred ----HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 007194 374 ----VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421 (613)
Q Consensus 374 ----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 421 (613)
..+||.= -.|...|++-.|.+.|.+.... +..++..|..+..+|..
T Consensus 332 nks~eilYNcG-~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 332 NKSMEILYNCG-LLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred ccchhhHHhhh-HHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 2345432 3467789999999999887764 56788999999988853
No 373
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=47.18 E-value=79 Score=20.64 Aligned_cols=28 Identities=11% Similarity=0.236 Sum_probs=11.7
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 007194 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYG 166 (613)
Q Consensus 139 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 166 (613)
+.|-.+++..++++|.+.|+.-+...+.
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~ 41 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIE 41 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHH
Confidence 3344444444444444444443333333
No 374
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=47.05 E-value=23 Score=29.03 Aligned_cols=30 Identities=20% Similarity=0.241 Sum_probs=16.8
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007194 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418 (613)
Q Consensus 387 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 418 (613)
.|.-.+|..+|++|++.|-+|| .|+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 3445556666666666666665 24444443
No 375
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=46.94 E-value=40 Score=18.23 Aligned_cols=25 Identities=20% Similarity=0.121 Sum_probs=11.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 007194 165 YGALIDGCAKAGQVAKAFGAYGIMR 189 (613)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~ 189 (613)
|..+...+...++++.|...|+...
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3334444444455555554444443
No 376
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=46.48 E-value=76 Score=23.43 Aligned_cols=45 Identities=16% Similarity=0.042 Sum_probs=19.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHH
Q 007194 281 QTGDWEFACSVYDDMTKKGVIPD--EVFLSALIDFAGHAGKVEAAFE 325 (613)
Q Consensus 281 ~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~ 325 (613)
...+.++|+..|...++.-..|. -.++..++.+|+..|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555444322211 1234444555555555544433
No 377
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=44.85 E-value=72 Score=21.45 Aligned_cols=34 Identities=12% Similarity=0.071 Sum_probs=20.9
Q ss_pred HHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 007194 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415 (613)
Q Consensus 380 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 415 (613)
+.-++.+.|++++|.+..+.+.+ +.|+..-...|
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L 40 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHH
Confidence 44566777777777777777776 46765554444
No 378
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=43.65 E-value=2e+02 Score=30.75 Aligned_cols=75 Identities=13% Similarity=0.120 Sum_probs=46.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC--CCcCHHhHHHHHHHHHhcCCHH------HHHHHHHHHHhCCCCCCHHHHHHH
Q 007194 309 ALIDFAGHAGKVEAAFEILQEAKNQG--ISVGIISYSSLMGACSNAKNWQ------KALELYEHMKSIKLKPTVSTMNAL 380 (613)
Q Consensus 309 ~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~~~~~~~~~~~~l 380 (613)
+++.+|...|++..+.++++.+...+ -+.=...+|..|+-..+.|.++ .|.+++++.. +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 77788888888888888888776553 2233456777777777777643 3334444333 34566677666
Q ss_pred HHHHHc
Q 007194 381 ITALCD 386 (613)
Q Consensus 381 i~~~~~ 386 (613)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 655443
No 379
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=43.43 E-value=1.7e+02 Score=30.82 Aligned_cols=132 Identities=20% Similarity=0.160 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007194 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (613)
Q Consensus 251 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 330 (613)
+-+-.+|..|.... .|-..+.|.-.-.+.-.|+...|...+.........-..+....|.....+.|..-.|-.++.+.
T Consensus 590 e~~~~~~~~~~~~~-~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~ 668 (886)
T KOG4507|consen 590 EIGSFLFHAINKPN-APIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQA 668 (886)
T ss_pred HHHHHHHHHhcCCC-CCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHH
Confidence 34444555444332 33223333323333445777777766665543322212233344444555556666676666665
Q ss_pred HHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007194 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (613)
Q Consensus 331 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (613)
.... ...+.++..+.++|.-..+++.|++-|++..+.. +.+.+.-+.|...-|
T Consensus 669 l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 669 LAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred Hhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 5544 3445666777777777788888888887776653 344555555544433
No 380
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=43.43 E-value=1.6e+02 Score=23.35 Aligned_cols=27 Identities=11% Similarity=0.144 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007194 271 VYTIAINCCSQTGDWEFACSVYDDMTK 297 (613)
Q Consensus 271 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 297 (613)
-|..++..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 478888888888888888888888766
No 381
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=42.52 E-value=90 Score=32.69 Aligned_cols=55 Identities=13% Similarity=-0.003 Sum_probs=23.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 007194 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224 (613)
Q Consensus 169 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (613)
.....+.|..-.|-.++.+..... ...+.++-.+-+++....+++.|++.|.+..
T Consensus 649 a~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~ 703 (886)
T KOG4507|consen 649 ANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQAL 703 (886)
T ss_pred HHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHH
Confidence 333334444444444444433322 2223334444444444445555555544444
No 382
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=41.99 E-value=3.5e+02 Score=26.58 Aligned_cols=67 Identities=10% Similarity=0.030 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007194 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHK 262 (613)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 262 (613)
...+|..+...+.+.|.++.|...+..+......... +..+.-.-++..-..|+..+|...++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456777788888888888888888777652111111 222333345556667788888887776665
No 383
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=41.00 E-value=2.1e+02 Score=30.73 Aligned_cols=32 Identities=19% Similarity=0.064 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHH
Q 007194 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348 (613)
Q Consensus 317 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 348 (613)
.|+..+|.+.+-.+.+....|...-...|.++
T Consensus 508 ~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~ 539 (566)
T PF07575_consen 508 EGDFREAASLLVSLLKSPIAPKSFWPLLLCDA 539 (566)
T ss_dssp --------------------------------
T ss_pred hhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Confidence 47777887777777777766665555555444
No 384
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=40.86 E-value=63 Score=30.88 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=25.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHH
Q 007194 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130 (613)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~ 130 (613)
-||..|....+.||+++|+.++++..+.|+.--..+|
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 4567777777777777777777777777754433333
No 385
>PRK10941 hypothetical protein; Provisional
Probab=40.25 E-value=3.3e+02 Score=25.86 Aligned_cols=59 Identities=14% Similarity=-0.007 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 007194 166 GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (613)
Q Consensus 166 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (613)
+.|-.+|.+.++++.|+++.+.+.... +.|..-+.--.-.|.+.|.+..|..-++...+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 334444555555555555555555442 22333344444445555555555555554443
No 386
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=40.20 E-value=1.1e+02 Score=24.17 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=23.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007194 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (613)
Q Consensus 133 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 170 (613)
+++.+.+|...++|+++.+.|.++| +.+...-+.|-.
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~ 103 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRS 103 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4555667777777777777777776 445444444433
No 387
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=39.94 E-value=3.3e+02 Score=25.72 Aligned_cols=25 Identities=24% Similarity=0.119 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHH
Q 007194 126 DCKLYTTLITTCAKSGKVDAMFEVF 150 (613)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~a~~~~ 150 (613)
|+.....+...|.+.|++.+|+.-|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 5677777888888888888877665
No 388
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=39.91 E-value=99 Score=25.33 Aligned_cols=24 Identities=8% Similarity=0.034 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHH
Q 007194 93 STFNMLMSVCASSKDSEGAFQVLR 116 (613)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~l~~ 116 (613)
.-|......+-..|++.+|.++|+
T Consensus 100 lfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 100 LFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444555556666666666654
No 389
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=38.57 E-value=4.3e+02 Score=26.68 Aligned_cols=61 Identities=16% Similarity=0.047 Sum_probs=34.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 007194 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260 (613)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 260 (613)
..-|++...-.|+.....+.++.|..+-.+..|...+---+.-+|.-.|++.+|.+.|-.+
T Consensus 238 L~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~ni 298 (525)
T KOG3677|consen 238 LLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNI 298 (525)
T ss_pred HHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHH
Confidence 3345566666677666666666665543343443222133445566667777777776554
No 390
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=37.93 E-value=5.7e+02 Score=27.87 Aligned_cols=155 Identities=12% Similarity=0.116 Sum_probs=66.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCcCHHhHHHHHHHHHh---
Q 007194 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG-ISVGIISYSSLMGACSN--- 351 (613)
Q Consensus 276 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~--- 351 (613)
...+.-.|+++.|.+.+.+ ..+...|.+.+...+..|.- +......-..+.... -.|...-+..||..|++
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gL---L~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGL---LRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCC---CCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3455678999999998877 22233456666655554332 222211112222211 01222567888888876
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHH-HHHHcCCChhH-----------HHHHHHH-HHhCCCCC-CHHH---HH
Q 007194 352 AKNWQKALELYEHMKSIKLKPT-VSTMNALI-TALCDGDQLPK-----------TMEVLSD-MKSLGLCP-NTIT---YS 413 (613)
Q Consensus 352 ~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li-~~~~~~g~~~~-----------A~~l~~~-m~~~g~~p-~~~t---~~ 413 (613)
..+..+|.+.|--+....- |+ ...+...+ ......++++. ---++++ ..--++.. +... ..
T Consensus 340 ~td~~~Al~Y~~li~~~~~-~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~ 418 (613)
T PF04097_consen 340 ITDPREALQYLYLICLFKD-PEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIE 418 (613)
T ss_dssp TT-HHHHHHHHHGGGGS-S-CCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHH
Confidence 4678888888877765432 22 22222222 22222221111 1111222 00001222 2222 23
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHH
Q 007194 414 ILLVACERKDDVEVGLMLLSQAK 436 (613)
Q Consensus 414 ~ll~a~~~~g~~~~a~~~~~~~~ 436 (613)
.+..-|...|++++|..+|..+.
T Consensus 419 ~~A~~~e~~g~~~dAi~Ly~La~ 441 (613)
T PF04097_consen 419 QAAREAEERGRFEDAILLYHLAE 441 (613)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHh
Confidence 33455788999999999997765
No 391
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=37.64 E-value=2.1e+02 Score=22.71 Aligned_cols=78 Identities=14% Similarity=0.067 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 007194 39 GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLV 118 (613)
Q Consensus 39 g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 118 (613)
...+||-.+.+.+...+. ....+...-+.....+|++++|+..=.....||...|-++-. .+.|-.+++..-+.++
T Consensus 20 HcH~EA~tIa~wL~~~~~--~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE--MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRL 95 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT--THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 355666666666666552 122111111222334455555533222333455555544322 2344444444444444
Q ss_pred HH
Q 007194 119 QE 120 (613)
Q Consensus 119 ~~ 120 (613)
..
T Consensus 96 a~ 97 (116)
T PF09477_consen 96 AS 97 (116)
T ss_dssp CT
T ss_pred Hh
Confidence 33
No 392
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=37.47 E-value=89 Score=21.76 Aligned_cols=21 Identities=19% Similarity=0.157 Sum_probs=8.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 007194 168 LIDGCAKAGQVAKAFGAYGIM 188 (613)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~m 188 (613)
+|.+|...|++++|.+...++
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344444444444444444333
No 393
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=37.37 E-value=4.1e+02 Score=26.04 Aligned_cols=22 Identities=14% Similarity=0.004 Sum_probs=13.2
Q ss_pred HhhcCCHHHHHHHHHHHHHcCC
Q 007194 419 CERKDDVEVGLMLLSQAKEDGV 440 (613)
Q Consensus 419 ~~~~g~~~~a~~~~~~~~~~g~ 440 (613)
+.+.|-.+.|..+++-+++.++
T Consensus 164 l~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 164 LRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHCCchHHHHHHHHHHHHHHc
Confidence 3556666666666666665433
No 394
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=36.09 E-value=2.5e+02 Score=24.79 Aligned_cols=68 Identities=13% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCCc-------CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh
Q 007194 320 VEAAFEILQEAKNQGISV-------GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390 (613)
Q Consensus 320 ~~~A~~~~~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 390 (613)
++.|+.+++.+.+.--.| ....--..+-.|.+.|.+++|.+++++..+ .|+......-+....+.++.
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd~ 159 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKDP 159 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHcccc
No 395
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=35.71 E-value=59 Score=22.65 Aligned_cols=33 Identities=18% Similarity=0.450 Sum_probs=24.9
Q ss_pred ccChhhhHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007194 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERK 54 (613)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~ 54 (613)
-||+.-...+...|++.|++++|.+.+.++...
T Consensus 20 RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~~ 52 (62)
T PF14689_consen 20 RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSKD 52 (62)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 356666777788888999999999988887653
No 396
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=35.08 E-value=69 Score=30.59 Aligned_cols=36 Identities=19% Similarity=0.363 Sum_probs=20.2
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHH
Q 007194 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412 (613)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 412 (613)
|+..|..-.+.|++++|++++++..+.|+.--..||
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 445566666666666666666666665544333333
No 397
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=34.32 E-value=2.1e+02 Score=24.17 Aligned_cols=34 Identities=9% Similarity=0.057 Sum_probs=15.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 007194 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306 (613)
Q Consensus 273 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 306 (613)
..++..+.+.+..-.|.++++++.+.++..+..|
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaT 57 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELREEGPGISLAT 57 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhH
Confidence 3444444444444555555555555444433333
No 398
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=33.68 E-value=1.8e+02 Score=22.19 Aligned_cols=57 Identities=12% Similarity=0.261 Sum_probs=34.8
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCC
Q 007194 46 DLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKD 107 (613)
Q Consensus 46 ~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 107 (613)
.+++.+.+.|+++... .- .+-......+.+.++++.++...+.+|..+..++-..+.
T Consensus 24 ~v~~~L~~~gvlt~~~-~~----~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 24 ELLIHLLQKDILTDSM-AE----SIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred HHHHHHHHcCCCCHHH-HH----HHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 4677777777754332 11 112233445777777777777777777777777765443
No 399
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=33.46 E-value=4.4e+02 Score=25.22 Aligned_cols=97 Identities=18% Similarity=0.127 Sum_probs=52.2
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCCHHHHH-HHHHHHHcCCChhHHHHHHHHHHhCCCCCCH---
Q 007194 338 GIISYSSLMGACSNAKNWQKALELYEHMK----SIKLKPTVSTMN-ALITALCDGDQLPKTMEVLSDMKSLGLCPNT--- 409 (613)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~~~~-~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--- 409 (613)
-...+..+..-|++.++.+.+.+..++.. ..|.+.|+...- -|.-.|....-.++.++..+.|.+.|-..+.
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 34566677777888777777776655543 345445543221 1222333334466777777777777654432
Q ss_pred -HHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 007194 410 -ITYSILLVACERKDDVEVGLMLLSQAK 436 (613)
Q Consensus 410 -~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (613)
.+|..+. |....++.+|-.++....
T Consensus 194 yK~Y~Gi~--~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 194 YKVYKGIF--KMMRRNFKEAAILLSDIL 219 (412)
T ss_pred HHHHHHHH--HHHHHhhHHHHHHHHHHh
Confidence 2333322 333455666666665544
No 400
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=32.95 E-value=2.7e+02 Score=22.74 Aligned_cols=42 Identities=12% Similarity=0.312 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHH
Q 007194 110 GAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFH 151 (613)
Q Consensus 110 ~A~~l~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~ 151 (613)
.+.++|..|...|+... ...|..-...+...|++++|.++|.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555555554332 3344555555555555555555554
No 401
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=32.75 E-value=3.6e+02 Score=29.06 Aligned_cols=91 Identities=19% Similarity=0.208 Sum_probs=60.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHccCCHH------HHHHHHHHHhhCCCCCCCCHHHHH
Q 007194 167 ALIDGCAKAGQVAKAFGAYGIMRSK--NVKPDRVVFNALITACGQSGAVD------RAFDVLAEMNAEVHPVDPDHITIG 238 (613)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~~~~~~~~~~~~~ 238 (613)
+|+.+|..+|++..+.++++..... |-+.=...+|..|+...+.|.++ .|.+++++.. +.-|..||.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~-----ln~d~~t~a 107 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR-----LNGDSLTYA 107 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh-----cCCcchHHH
Confidence 7899999999999999999988764 32333556888888888888754 3444454433 456778888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh
Q 007194 239 ALMKACANAGQVDRAREVYKMIHK 262 (613)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~ 262 (613)
.|+.+-..--+-....-++.+...
T Consensus 108 ll~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 108 LLCQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHHHhhcChHhHHhccHHHHHHHH
Confidence 777655443333333444444443
No 402
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=32.47 E-value=6e+02 Score=26.57 Aligned_cols=178 Identities=10% Similarity=0.049 Sum_probs=89.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCHHHHH
Q 007194 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238 (613)
Q Consensus 159 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 238 (613)
..|....-+++..+..+..+.-+..+..+|..-| -+...|..++..|..+ ..+.-..+++++.+- . -.|++.-.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~--d-fnDvv~~R 136 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEY--D-FNDVVIGR 136 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--c-chhHHHHH
Confidence 3455556666677766666666666767776653 2555666677777666 344555566655542 1 12333333
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHH
Q 007194 239 ALMKACANAGQVDRAREVYKMIHKYNIKG-----TPEVYTIAINCCSQTGDWEFACSVYDDMTKK-GVIPDEVFLSALID 312 (613)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~ 312 (613)
.|...|-+ ++.+.+...|.++..+-++. -...|.-++..- ..+.+..+.+..++... |..--.+.+.-+-.
T Consensus 137 eLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~ 213 (711)
T COG1747 137 ELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYK 213 (711)
T ss_pred HHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 34444433 66666666666665543221 122344444321 23444444444444432 22222334444445
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHH
Q 007194 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346 (613)
Q Consensus 313 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 346 (613)
-|....++.+|++++..+.+.+ ..|...-..++
T Consensus 214 ~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i 246 (711)
T COG1747 214 KYSENENWTEAIRILKHILEHD-EKDVWARKEII 246 (711)
T ss_pred HhccccCHHHHHHHHHHHhhhc-chhhhHHHHHH
Confidence 5555566666666666655554 23333333333
No 403
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=32.17 E-value=2.2e+02 Score=25.29 Aligned_cols=31 Identities=13% Similarity=0.078 Sum_probs=14.4
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007194 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (613)
Q Consensus 372 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 402 (613)
|+...|..++..+...|+.++|.+...++..
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444444444444444444444444443
No 404
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=31.76 E-value=90 Score=22.07 Aligned_cols=30 Identities=13% Similarity=0.212 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 007194 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157 (613)
Q Consensus 128 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 157 (613)
..++.++..+++-.-.++++..+.+..+.|
T Consensus 9 ~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 9 PLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344444444444444444444444444444
No 405
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=31.76 E-value=98 Score=17.21 Aligned_cols=17 Identities=24% Similarity=0.208 Sum_probs=13.0
Q ss_pred CCHHHHHHHHHHHHHcC
Q 007194 39 GRISECIDLLEDMERKG 55 (613)
Q Consensus 39 g~~~~A~~l~~~m~~~~ 55 (613)
|+.+.|..+|+++.+..
T Consensus 1 ~~~~~~r~i~e~~l~~~ 17 (33)
T smart00386 1 GDIERARKIYERALEKF 17 (33)
T ss_pred CcHHHHHHHHHHHHHHC
Confidence 46778888888888765
No 406
>PHA02875 ankyrin repeat protein; Provisional
Probab=31.61 E-value=5.6e+02 Score=25.96 Aligned_cols=75 Identities=17% Similarity=0.203 Sum_probs=31.1
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHccCCH
Q 007194 138 AKSGKVDAMFEVFHEMVNAGIEPNVHT--YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV--VFNALITACGQSGAV 213 (613)
Q Consensus 138 ~~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~ 213 (613)
++.|+.+-+. .+.+.|..|+... ..+.+...+..|+.+-+ +.+.+.|..|+.. ...+.+...+..|+.
T Consensus 10 ~~~g~~~iv~----~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 10 ILFGELDIAR----RLLDIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHhCCHHHHH----HHHHCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 3455554333 3334555554322 23344444555555422 2333344433322 111233344445555
Q ss_pred HHHHHHH
Q 007194 214 DRAFDVL 220 (613)
Q Consensus 214 ~~A~~~~ 220 (613)
+.+..++
T Consensus 82 ~~v~~Ll 88 (413)
T PHA02875 82 KAVEELL 88 (413)
T ss_pred HHHHHHH
Confidence 5444444
No 407
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=31.27 E-value=4.3e+02 Score=24.48 Aligned_cols=73 Identities=11% Similarity=0.216 Sum_probs=35.2
Q ss_pred CCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-C-----------CCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 007194 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI-K-----------LKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (613)
Q Consensus 333 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~-----------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 400 (613)
.+++-+.....+++ +...|++.+|..-++.-... | -.|.+.....++..+. .+++++|.+.+.++
T Consensus 188 Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~l 264 (333)
T KOG0991|consen 188 EKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAEL 264 (333)
T ss_pred hCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHH
Confidence 33333333333333 44566666666655543220 0 1345444444444433 34556666666666
Q ss_pred HhCCCCCC
Q 007194 401 KSLGLCPN 408 (613)
Q Consensus 401 ~~~g~~p~ 408 (613)
-+.|+.|.
T Consensus 265 w~lgysp~ 272 (333)
T KOG0991|consen 265 WKLGYSPE 272 (333)
T ss_pred HHcCCCHH
Confidence 55555554
No 408
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.03 E-value=2e+02 Score=21.27 Aligned_cols=25 Identities=12% Similarity=0.275 Sum_probs=15.6
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCC
Q 007194 133 LITTCAKSGKVDAMFEVFHEMVNAG 157 (613)
Q Consensus 133 li~~~~~~g~~~~a~~~~~~m~~~g 157 (613)
+++.+.+|.-.++|+++.+.|.++|
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 4455566666666666666666665
No 409
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=30.62 E-value=2.4e+02 Score=21.44 Aligned_cols=53 Identities=13% Similarity=0.068 Sum_probs=28.9
Q ss_pred HcCCChhHHHHHHHHHHh----CCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007194 385 CDGDQLPKTMEVLSDMKS----LGLCPN----TITYSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 385 ~~~g~~~~A~~l~~~m~~----~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (613)
.+.|++.+|.+.+.+..+ .+..+. ......+.......|++++|.+.+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 346666666555444432 221121 12222334456677888888888887764
No 410
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=30.53 E-value=6.1e+02 Score=25.99 Aligned_cols=77 Identities=12% Similarity=0.071 Sum_probs=58.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 007194 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (613)
Q Consensus 307 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 386 (613)
...|+.-|...|+..+|....+++--- +--...++-+++.+.-+.|+-..-+.+++..-.. ..+|-+.|-.+|.+
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s----glIT~nQMtkGf~R 586 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKS----GLITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CceeHHHhhhhhhh
Confidence 467888899999999999888776321 1234678889999999999988888888887754 45677888888876
Q ss_pred CC
Q 007194 387 GD 388 (613)
Q Consensus 387 ~g 388 (613)
-.
T Consensus 587 V~ 588 (645)
T KOG0403|consen 587 VY 588 (645)
T ss_pred hh
Confidence 44
No 411
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=30.51 E-value=8.9e+02 Score=27.92 Aligned_cols=265 Identities=13% Similarity=0.005 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007194 58 DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137 (613)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~ 137 (613)
..+..+...........+..+..-.+...+..++...-...+.++.+.+........+..+... +|..+-...+..+
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A~~aL 708 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAALDVL 708 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHHHHHH
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH-H
Q 007194 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR-A 216 (613)
Q Consensus 138 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A 216 (613)
...+ ......+...+. .+|..+-...+.++.+.+..+.....+. .++...=.....++...+..+. +
T Consensus 709 ~~~~-~~~~~~l~~~L~----D~d~~VR~~Av~aL~~~~~~~~l~~~l~-------D~~~~VR~~aa~aL~~~~~~~~~~ 776 (897)
T PRK13800 709 RALR-AGDAALFAAALG----DPDHRVRIEAVRALVSVDDVESVAGAAT-------DENREVRIAVAKGLATLGAGGAPA 776 (897)
T ss_pred Hhhc-cCCHHHHHHHhc----CCCHHHHHHHHHHHhcccCcHHHHHHhc-------CCCHHHHHHHHHHHHHhccccchh
Q ss_pred HHHHHHHhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007194 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (613)
Q Consensus 217 ~~~~~~m~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 296 (613)
...+..+.. .+|...-.+.+.++.+.|....+...+..+.+ .++..+-...+.++...+. +++...+..+.
T Consensus 777 ~~~L~~ll~-----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L 847 (897)
T PRK13800 777 GDAVRALTG-----DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALVEAL 847 (897)
T ss_pred HHHHHHHhc-----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHHHHh
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhc
Q 007194 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352 (613)
Q Consensus 297 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 352 (613)
+. |+...-...+.++.+......+...+....+.. |..+-.....++...
T Consensus 848 ~D---~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D~---d~~Vr~~A~~aL~~~ 897 (897)
T PRK13800 848 TD---PHLDVRKAAVLALTRWPGDPAARDALTTALTDS---DADVRAYARRALAHA 897 (897)
T ss_pred cC---CCHHHHHHHHHHHhccCCCHHHHHHHHHHHhCC---CHHHHHHHHHHHhhC
No 412
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=29.48 E-value=5.3e+02 Score=25.00 Aligned_cols=47 Identities=9% Similarity=0.009 Sum_probs=32.4
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhH
Q 007194 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK 75 (613)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~ 75 (613)
..+..|..+..+++..+.++-+++....+ |.-...|.+..+.+.+.|
T Consensus 101 d~~~~~~~~~~~~~~~~Ll~~~E~sl~~~--pfWLDgq~~~~qal~~lG 147 (301)
T TIGR03362 101 DRVADYQELLAQADWAALLQRVEQSLSLA--PFWLDGQRLSAQALERLG 147 (301)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhC--chhhHHHHHHHHHHHHCC
Confidence 34556777778888888888888887775 555556666666666655
No 413
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=29.12 E-value=1.1e+02 Score=31.34 Aligned_cols=102 Identities=12% Similarity=0.034 Sum_probs=55.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHcCCCh
Q 007194 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT---LSTFNMLMSVCASSKDS 108 (613)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~ 108 (613)
.|.+++...++.|+.++.+.++.+ |+...+...-..+..+.+++..|+.=+....+-+ ...|--=..++.+.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 455667888899999999888887 5555554443344444444444444433333222 12222222344455556
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007194 109 EGAFQVLRLVQEAGLKADCKLYTTLITTC 137 (613)
Q Consensus 109 ~~A~~l~~~m~~~g~~~~~~~~~~li~~~ 137 (613)
.+|+..|+..... .|+..-....+.-|
T Consensus 89 ~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 89 KKALLDLEKVKKL--APNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHhhhc--CcCcHHHHHHHHHH
Confidence 6666666655542 55555555444444
No 414
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=29.12 E-value=2.2e+02 Score=22.72 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=19.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHH
Q 007194 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345 (613)
Q Consensus 310 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 345 (613)
+++.+.++...++|+++.+.|.++| ..+...-+.|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eL 101 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKEL 101 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3444555666677777777777666 3444433333
No 415
>PRK10941 hypothetical protein; Provisional
Probab=29.01 E-value=5.1e+02 Score=24.63 Aligned_cols=60 Identities=13% Similarity=0.012 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007194 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (613)
Q Consensus 238 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 298 (613)
+.+-.+|.+.++++.|.++.+.+.... +.++.-+.--.-.|.+.|.+..|..=++...+.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 334455666666666666666666654 445555555555566666666666666555443
No 416
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=28.70 E-value=1.4e+02 Score=21.16 Aligned_cols=51 Identities=16% Similarity=0.152 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 007194 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140 (613)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~ 140 (613)
.|....++-++..+++..-.+.++..+.+....| .-+..+|..-+..+++.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLARE 55 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 3556677888888888888899999999999888 45677777666666554
No 417
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=28.15 E-value=2.6e+02 Score=20.97 Aligned_cols=62 Identities=11% Similarity=0.143 Sum_probs=37.3
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHH
Q 007194 45 IDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGA 111 (613)
Q Consensus 45 ~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 111 (613)
..+++.+.+.|++..... -..-......+.|.++++.++.....+|.++.+++-..|...-|
T Consensus 19 ~~v~~~L~~~~Vlt~~~~-----e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRGVFTPDMI-----EEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcCCCCHHHH-----HHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 346777777776543211 11122334467777777777777777777777777666654443
No 418
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=28.08 E-value=7.1e+02 Score=25.99 Aligned_cols=99 Identities=10% Similarity=0.089 Sum_probs=58.6
Q ss_pred CcCHHh-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--cCCChhHHHHHHHHHHh-CCCCCCHHH
Q 007194 336 SVGIIS-YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC--DGDQLPKTMEVLSDMKS-LGLCPNTIT 411 (613)
Q Consensus 336 ~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~l~~~m~~-~g~~p~~~t 411 (613)
.++..+ -+.+++-+-+.|-.++|+.++..+.... +|+...|..+|..-. ...+..-+..+++.|.. -| .|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHH
Confidence 344443 3566777777888888888888777653 466666766665322 11225566666666654 33 55556
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007194 412 YSILLVACERKDDVEVGLMLLSQAKE 437 (613)
Q Consensus 412 ~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (613)
|.-.+.--...|..+.+-.++.++.+
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHH
Confidence 65555555566666665555555443
No 419
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=27.79 E-value=6.6e+02 Score=25.57 Aligned_cols=87 Identities=11% Similarity=0.106 Sum_probs=54.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH--------HHhcCCHHHHHHHHHHHHHCCC
Q 007194 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC--------CSQTGDWEFACSVYDDMTKKGV 300 (613)
Q Consensus 229 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~~~ 300 (613)
.+.||.++.|-+...++..-..+-...+++...+.+ .|-.+.+-++|-. -.+...-++++++++.|...--
T Consensus 178 kitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L~ 256 (669)
T KOG3636|consen 178 KITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQLS 256 (669)
T ss_pred ccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhcc
Confidence 467888888888888888878888888888777765 3333333333211 1233456788888888875432
Q ss_pred CCCHHHHHHHHHHHHh
Q 007194 301 IPDEVFLSALIDFAGH 316 (613)
Q Consensus 301 ~p~~~~~~~li~~~~~ 316 (613)
.-|+.-+-+|...|+.
T Consensus 257 ~eDvpDffsLAqyY~~ 272 (669)
T KOG3636|consen 257 VEDVPDFFSLAQYYSD 272 (669)
T ss_pred cccchhHHHHHHHHhh
Confidence 2355556666666553
No 420
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=27.41 E-value=1.9e+02 Score=20.96 Aligned_cols=33 Identities=12% Similarity=0.246 Sum_probs=18.0
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 007194 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (613)
Q Consensus 249 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 282 (613)
+.+.|..++..+.... +.++..||++...+.++
T Consensus 12 DtEmA~~mL~DLr~de-kRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDE-KRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchh-hcChHHHHHHHHHHHHc
Confidence 3455566665554443 44556676666555443
No 421
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=27.14 E-value=1.4e+03 Score=29.22 Aligned_cols=62 Identities=16% Similarity=-0.007 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007194 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368 (613)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (613)
..+|....+.....|.++.|...+-...+.+ . +..+-.......+.|+...|..++++..+.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3567777777777889988887776666655 2 345556667778889999999998887753
No 422
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=27.00 E-value=6.7e+02 Score=25.31 Aligned_cols=52 Identities=13% Similarity=0.133 Sum_probs=25.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHh--cCCHHHHHHHHHHHHHC
Q 007194 281 QTGDWEFACSVYDDMTKKGVIPDEV--FLSALIDFAGH--AGKVEAAFEILQEAKNQ 333 (613)
Q Consensus 281 ~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~--~g~~~~A~~~~~~~~~~ 333 (613)
+.+++..|.++|+.+... +.++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 143 n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred hcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 556666666666666554 333222 23333333332 34455666666655443
No 423
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=26.96 E-value=9.5e+02 Score=27.10 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=22.5
Q ss_pred cCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 007194 175 AGQVAKAFGAYGIMRSK----NVKPDRVVFNALITACGQSGAVDRAFDVLAE 222 (613)
Q Consensus 175 ~g~~~~A~~~~~~m~~~----g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 222 (613)
.|+++.|.++-+..... -..+..+.+..+..+..-.|++++|..+..+
T Consensus 471 ~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~ 522 (894)
T COG2909 471 RGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQ 522 (894)
T ss_pred cCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHH
Confidence 45555555555444332 1122334444444555555555555555443
No 424
>PRK09857 putative transposase; Provisional
Probab=26.66 E-value=5.5e+02 Score=24.76 Aligned_cols=66 Identities=12% Similarity=0.133 Sum_probs=35.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 007194 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196 (613)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 196 (613)
+..++....+.++.++..++++.+.+. .+......-++..-+.+.|.-++++++..+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 444555445556666666666655544 122233333455555555655566666666666665443
No 425
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=26.42 E-value=3.2e+02 Score=25.51 Aligned_cols=58 Identities=12% Similarity=0.047 Sum_probs=29.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhC---CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 007194 202 ALITACGQSGAVDRAFDVLAEMNAE---VHPVDPDHITIGALMKACANAGQVDRAREVYKM 259 (613)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 259 (613)
.+..-|.+.|++++|.++|+.+... ..-..+...+...+..++.+.|+.+....+--+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3445556666666666666554311 111233444555566666666666665554433
No 426
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=26.36 E-value=4e+02 Score=22.48 Aligned_cols=64 Identities=17% Similarity=0.223 Sum_probs=37.5
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhhHHHHHHhh
Q 007194 396 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV-MFKCIIGMCSRRYEKARTLN 465 (613)
Q Consensus 396 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~-~~~~li~~~~~~~~~a~~~~ 465 (613)
+...+.+.|++++..=. .++..+...++.-.|.++++.+.+.+...+.. +|++| +. +.++|-+.
T Consensus 8 ~~~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L-~~----l~e~Glv~ 72 (145)
T COG0735 8 AIERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTL-KL----LEEAGLVH 72 (145)
T ss_pred HHHHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHH-HH----HHHCCCEE
Confidence 34455666776655432 34455566666677888888888766555443 35554 33 56666553
No 427
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=25.86 E-value=8.5e+02 Score=26.17 Aligned_cols=261 Identities=16% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 007194 78 KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157 (613)
Q Consensus 78 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 157 (613)
+-+....+.+..+....++.+++.+... +.+.-.++++.+.. .. ...+..++++....|......-+.+.+....
T Consensus 296 ~L~~~~~~~~~~~~~~~f~~lv~~lR~~-~~e~l~~l~~~~~~-~~---~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~ 370 (574)
T smart00638 296 HLVQDIASDVQEPAAAKFLRLVRLLRTL-SEEQLEQLWRQLYE-KK---KKARRIFLDAVAQAGTPPALKFIKQWIKNKK 370 (574)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhC-CHHHHHHHHHHHHh-CC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHccCCH------HHHHHHHHHH
Q 007194 158 IEP-NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR-------VVFNALITACGQSGAV------DRAFDVLAEM 223 (613)
Q Consensus 158 ~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~------~~A~~~~~~m 223 (613)
+.+ .....-..+-...+.-..+-...+++-+.....++.. .+|..+++-+|..... ++..+.+.+.
T Consensus 371 ~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~ 450 (574)
T smart00638 371 ITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHEL 450 (574)
T ss_pred CCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHH
Q ss_pred hhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCC
Q 007194 224 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT--GDWEFACSVYDDMTKKGVI 301 (613)
Q Consensus 224 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~ 301 (613)
... ..-..|..--...+.+....|.......+-..+. .....+...-...+.++.+. ...+.+..++-.+....-.
T Consensus 451 l~~-~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n~~e 528 (574)
T smart00638 451 LQQ-AVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLNRAE 528 (574)
T ss_pred HHH-HHhcCCchheeeHHHhhhccCChhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcCCCC
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCcCHHhHHHH
Q 007194 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ-GISVGIISYSSL 345 (613)
Q Consensus 302 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l 345 (613)
+...-..+++......-.......+...+... ......++|+.|
T Consensus 529 ~~EvRiaA~~~lm~t~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l 573 (574)
T smart00638 529 PPEVRMAAVLVLMETKPSVALLQRIAELLNKEPNLQVASFVYSHI 573 (574)
T ss_pred ChHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCcHHHHHHhHHhh
No 428
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=25.85 E-value=1e+03 Score=26.95 Aligned_cols=227 Identities=13% Similarity=0.093 Sum_probs=111.1
Q ss_pred HccCCHHHHHHHHHHHhhCCC--CCCCCH---HHHHHHHH-HHHhcCChhHHHHHHHHHHhc----CCCCCHHHHHHHHH
Q 007194 208 GQSGAVDRAFDVLAEMNAEVH--PVDPDH---ITIGALMK-ACANAGQVDRAREVYKMIHKY----NIKGTPEVYTIAIN 277 (613)
Q Consensus 208 ~~~g~~~~A~~~~~~m~~~~~--~~~~~~---~~~~~ll~-~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~li~ 277 (613)
....++++|..+..+....-. +..+.. ..++.|-. .....|+++.|.++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 445778888888877654210 011111 12333321 223457778887777665443 22334556677777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH---HHH--HHHHhcCCHH--HHHHHHHHHHHCC---C---CcCHHhHHH
Q 007194 278 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLS---ALI--DFAGHAGKVE--AAFEILQEAKNQG---I---SVGIISYSS 344 (613)
Q Consensus 278 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~---~li--~~~~~~g~~~--~A~~~~~~~~~~~---~---~~~~~~~~~ 344 (613)
+..-.|++++|..+..+..+..-.-+...+. .+. ..+...|... +....|....... . .+-..+...
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 7778888888888877655432222333222 221 2344456332 2333333332220 0 112334555
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHcCCChhHHHHHHHHHHhCCCC----CCHHHHHHHH-
Q 007194 345 LMGACSNAK-NWQKALELYEHMKSIKLKPTVSTM--NALITALCDGDQLPKTMEVLSDMKSLGLC----PNTITYSILL- 416 (613)
Q Consensus 345 li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~g~~----p~~~t~~~ll- 416 (613)
++.++.+.. ...++..-++--......|-.... ..|+..+...|+.++|...+.++...... ++..+-...+
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 555555411 112222222222222212222222 25677778889999998888887653222 2322222222
Q ss_pred -HHHhhcCCHHHHHHHHHH
Q 007194 417 -VACERKDDVEVGLMLLSQ 434 (613)
Q Consensus 417 -~a~~~~g~~~~a~~~~~~ 434 (613)
......|+.+.+.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 233557777777666554
No 429
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=25.74 E-value=3e+02 Score=20.92 Aligned_cols=22 Identities=18% Similarity=0.110 Sum_probs=12.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 007194 168 LIDGCAKAGQVAKAFGAYGIMR 189 (613)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~m~ 189 (613)
+...+...|++++|...+++..
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 3344555566666666666554
No 430
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=25.05 E-value=6.3e+02 Score=24.41 Aligned_cols=190 Identities=12% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHcCCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcC-----ChhHHHHHHHH---------HHHCCCCCC--
Q 007194 99 MSVCASSKDSEGAFQVLRLVQEA-GLKADCKLYTTLITTCAKSG-----KVDAMFEVFHE---------MVNAGIEPN-- 161 (613)
Q Consensus 99 i~~~~~~g~~~~A~~l~~~m~~~-g~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~---------m~~~g~~~~-- 161 (613)
+-++++.|..+ ...+++.+... .-.++...|..++..+.... ..+.....|+. +.+.|.++.
T Consensus 45 ~~al~~~g~~~-~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 123 (324)
T PF11838_consen 45 LFALARAGRLS-YSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPG 123 (324)
T ss_dssp HHHHHHTTSS--HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--
T ss_pred HHHHHHcCCCC-HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCccc
Q ss_pred HHHHHHHHHHH-HhcCC-----HHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC
Q 007194 162 VHTYGALIDGC-AKAGQ-----VAKAFGAYGIMRSKNV----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 231 (613)
Q Consensus 162 ~~~~~~li~~~-~~~g~-----~~~A~~~~~~m~~~g~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 231 (613)
......+++.. ..... .+.|.+.|+.....+. ..+...-..++....+.|+.+.-..+++.... .
T Consensus 124 ~~~~~~~lr~~~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~-----~ 198 (324)
T PF11838_consen 124 EDHNDRLLRALLLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN-----S 198 (324)
T ss_dssp SCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT-----T
T ss_pred ccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc-----c
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHH
Q 007194 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC-SQTGDWEFACSVYDD 294 (613)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~ 294 (613)
++...-..++.+.+...+.+...++++.+...+..++......+.... ......+.+.+.+..
T Consensus 199 ~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 199 TSPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp STHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHH
No 431
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.90 E-value=2.9e+02 Score=20.49 Aligned_cols=30 Identities=27% Similarity=0.411 Sum_probs=17.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH
Q 007194 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGII 340 (613)
Q Consensus 310 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 340 (613)
+++.+.++.-.++|+++++.+.+.| ..+..
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrG-Ei~~E 66 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRG-EITPE 66 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHH
Confidence 3445555666667777777776666 33433
No 432
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=24.65 E-value=5e+02 Score=26.77 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007194 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (613)
Q Consensus 319 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (613)
.+++-.++++.+.+.| .+| ....-|+.|.+.+++++|..-+++-.+
T Consensus 69 ~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~ 114 (480)
T TIGR01503 69 LLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKESIK 114 (480)
T ss_pred cHHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHHHHHHHhhhh
Confidence 3455555555555554 222 333445666666666666666655443
No 433
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=24.59 E-value=1.6e+03 Score=28.88 Aligned_cols=317 Identities=10% Similarity=0.026 Sum_probs=154.0
Q ss_pred HHHHHhhhHHHHHHHHHHHhCC----CCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 007194 67 FFNVCKSQKAIKEAFRFFKLVP----NPT--LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140 (613)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~~~~----~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~~ 140 (613)
+..+..+.+.+..|+-++++-. +.+ ..-+-.+...|+..++++...-+...-.. .|+ .+ .-|......
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l~-~qil~~e~~ 1462 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--LY-QQILEHEAS 1462 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--HH-HHHHHHHhh
Confidence 4445566778888888888732 111 12233344478888888877776653111 222 22 244455678
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHccCCHHHHHHH
Q 007194 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL-ITACGQSGAVDRAFDV 219 (613)
Q Consensus 141 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~~ 219 (613)
|++..|..-|+.+.+.+ ++....++-++......|.++.++-..+-.... ..+....|+++ +.+--+.++++.....
T Consensus 1463 g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred ccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 88999999999888774 333666776666666677777777655555433 23333344433 2344566677666655
Q ss_pred HHHHhhCCCCCCCCHHHHHH--HHHHHHhcC--ChhHHHHHHHHHHhcCC--------C-CCHHHHHHHHHHHHhcCCHH
Q 007194 220 LAEMNAEVHPVDPDHITIGA--LMKACANAG--QVDRAREVYKMIHKYNI--------K-GTPEVYTIAINCCSQTGDWE 286 (613)
Q Consensus 220 ~~~m~~~~~~~~~~~~~~~~--ll~~~~~~g--~~~~A~~~~~~~~~~~~--------~-~~~~~~~~li~~~~~~g~~~ 286 (613)
+. .. +..+|.+ +.....+.. +.-.-.+..+.+.+.-+ . .-...|..++....-...-.
T Consensus 1541 l~--~~-------n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~ 1611 (2382)
T KOG0890|consen 1541 LS--DR-------NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELEN 1611 (2382)
T ss_pred hh--cc-------cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHH
Confidence 54 11 1112222 222222211 11111112222222111 0 00123333333332221111
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHC----CC-CcCHHhHHHHHHHHHhcCCHHHHHH
Q 007194 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE-AKNQ----GI-SVGIISYSSLMGACSNAKNWQKALE 360 (613)
Q Consensus 287 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~ 360 (613)
....++..-......-+.--|..-+..-....+..+-+--+++ +... +. .--..+|-...+...+.|.++.|..
T Consensus 1612 ~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1612 SIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred HHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 1111110000000011111121122111111111111111111 1111 11 1224578888888888999999988
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 007194 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (613)
Q Consensus 361 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 403 (613)
..-...+.+ .| ..+--....+-+.|+...|+.++++-.+.
T Consensus 1692 all~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1692 ALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 776666554 23 34455667778899999999999987753
No 434
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=24.53 E-value=9.3e+02 Score=26.17 Aligned_cols=157 Identities=13% Similarity=0.151 Sum_probs=87.9
Q ss_pred HHHHH-hcCCHHHHHHHHHHHHHcCC---CCch-HHHHHHHHHHHhhhHHHHHHHHHHHhCC----C----CCHHHHHHH
Q 007194 32 YNRLI-RQGRISECIDLLEDMERKGL---LDMD-KVYHARFFNVCKSQKAIKEAFRFFKLVP----N----PTLSTFNML 98 (613)
Q Consensus 32 ~~~l~-~~g~~~~A~~l~~~m~~~~~---~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~----~~~~~~~~l 98 (613)
.+.|+ ...++++|...+++.....- +.+- .....++++++.+.+... |.+..++.. . +-...|..+
T Consensus 66 a~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll 144 (608)
T PF10345_consen 66 ASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLL 144 (608)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHH
Confidence 34444 68899999999997654321 1111 122334455555554433 766666532 1 111222233
Q ss_pred -HHHHHcCCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHH--HcCChhHHHHHHHHHHHCC---------CCCCHH
Q 007194 99 -MSVCASSKDSEGAFQVLRLVQEAG---LKADCKLYTTLITTCA--KSGKVDAMFEVFHEMVNAG---------IEPNVH 163 (613)
Q Consensus 99 -i~~~~~~g~~~~A~~l~~~m~~~g---~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~g---------~~~~~~ 163 (613)
+..+...+++..|.+.++.....- ..|-..++..++.+.. +.+..+++.+..+.+.... ..|-..
T Consensus 145 ~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~ 224 (608)
T PF10345_consen 145 KIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLK 224 (608)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHH
Confidence 233333479999999998876532 2344555555555544 3455677777777663321 134566
Q ss_pred HHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 007194 164 TYGALIDGCA--KAGQVAKAFGAYGIMR 189 (613)
Q Consensus 164 ~~~~li~~~~--~~g~~~~A~~~~~~m~ 189 (613)
+|..+++.++ ..|+++.+...++++.
T Consensus 225 ~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 225 ALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777654 5677767766655553
No 435
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=24.35 E-value=4e+02 Score=24.86 Aligned_cols=61 Identities=15% Similarity=0.097 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhc----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007194 236 TIGALMKACANAGQVDRAREVYKMIHKY----N-IKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (613)
Q Consensus 236 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 296 (613)
....+...|.+.|++++|.++|+.+... | ..+...+...+..++.+.|+.+..+.+--++.
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 4445677788888999998888877432 1 12334566677888888888888777665553
No 436
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=23.99 E-value=6.5e+02 Score=24.14 Aligned_cols=28 Identities=4% Similarity=-0.009 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007194 162 VHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (613)
Q Consensus 162 ~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (613)
...|..+..-|++-++.+.+.++.++..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~ 142 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLM 142 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 4456667777777777777766655543
No 437
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=23.95 E-value=4.7e+02 Score=25.29 Aligned_cols=42 Identities=5% Similarity=0.082 Sum_probs=20.8
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007194 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (613)
Q Consensus 290 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 331 (613)
++++.|.+.++.|.-+.+.-+.-.+.+.=.+...+.+++.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 444555555555555444444444444444555555555543
No 438
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=23.94 E-value=1.2e+02 Score=17.99 Aligned_cols=23 Identities=9% Similarity=0.107 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHH
Q 007194 424 DVEVGLMLLSQAKEDGVIPNLVMFK 448 (613)
Q Consensus 424 ~~~~a~~~~~~~~~~g~~p~~~~~~ 448 (613)
.++.|+.+|++.+. +.|++.+|-
T Consensus 2 E~dRAR~IyeR~v~--~hp~~k~Wi 24 (32)
T PF02184_consen 2 EFDRARSIYERFVL--VHPEVKNWI 24 (32)
T ss_pred hHHHHHHHHHHHHH--hCCCchHHH
Confidence 46778888888876 457766654
No 439
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=23.93 E-value=8e+02 Score=25.19 Aligned_cols=75 Identities=13% Similarity=0.223 Sum_probs=52.7
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007194 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456 (613)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~ 456 (613)
...|+.-|...|...+|.+.++++--- +--..+.+.+++.+..+.|+-..-+.+++..-+.|+ .|-+.|-..|.|
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf~R 586 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhhhh
Confidence 456788899999999999988775310 112456788899999999988877777777666553 355555555544
No 440
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.79 E-value=1.2e+03 Score=27.31 Aligned_cols=129 Identities=12% Similarity=0.176 Sum_probs=72.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhCC-CCC--HHHHHHHHHHHHcCCChHHHHH
Q 007194 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-NPT--LSTFNMLMSVCASSKDSEGAFQ 113 (613)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~--~~~~~~li~~~~~~g~~~~A~~ 113 (613)
..|...+|+..|.+... |+..++ .++.......-.+..+.+. +.+ ++. ..-|..+++.+-+.+..+.+.+
T Consensus 932 ~tge~~kAl~cF~~a~S-g~ge~~-aL~~lv~~~~p~~~sv~dG-----~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQ 1004 (1480)
T KOG4521|consen 932 GTGEPVKALNCFQSALS-GFGEGN-ALRKLVYFLLPKRFSVADG-----KTPSEELTALHYYLKVVRLLEEHNHAEEVCQ 1004 (1480)
T ss_pred cCCchHHHHHHHHHHhh-ccccHH-HHHHHHHHhcCCCCchhcC-----CCCCchHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 67888899999988775 333444 2322222111110000000 011 122 3446677788888888888888
Q ss_pred HHHHHHHcCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHH
Q 007194 114 VLRLVQEAGLKAD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH----TYGALIDGCAKAGQVA 179 (613)
Q Consensus 114 l~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~----~~~~li~~~~~~g~~~ 179 (613)
+-....+. +++| ..+++.+.+.....|.+-+|.+.+-. .||.. +...|+..++.+|+++
T Consensus 1005 lA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcLRqlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1005 LAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCLRQLVIVLFECGELE 1071 (1480)
T ss_pred HHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHHHHHHHHHHhccchH
Confidence 87776654 2332 34567777777777777777665433 34433 4555666677777654
No 441
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=23.47 E-value=7.1e+02 Score=24.39 Aligned_cols=40 Identities=15% Similarity=0.067 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHHHHH
Q 007194 163 HTYGALIDGCAKAGQVAKAFGAYGIMRS----KNVKPDRVVFNA 202 (613)
Q Consensus 163 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~~~ 202 (613)
..+-....-||+-|+-+.|++.+++..+ .|.+.|++.+..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~i 148 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKI 148 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHH
Confidence 3455566677888888888777765543 355666555443
No 442
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=23.40 E-value=3.3e+02 Score=20.57 Aligned_cols=43 Identities=21% Similarity=0.390 Sum_probs=27.4
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 007194 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155 (613)
Q Consensus 113 ~l~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (613)
++|+.....|+.-|+.+|..+++...-.=..+...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 6666666667777777777776666555555555666666543
No 443
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=22.92 E-value=7.9e+02 Score=24.77 Aligned_cols=55 Identities=11% Similarity=0.111 Sum_probs=35.7
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHh--cCCHHHHHHHHHHHHhC
Q 007194 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVH--TYGALIDGCAK--AGQVAKAFGAYGIMRSK 191 (613)
Q Consensus 136 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~~~--~g~~~~A~~~~~~m~~~ 191 (613)
.+...+++..|.++|+.+... ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 334778888888888888775 444443 44555555543 45677888888776644
No 444
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=22.62 E-value=6.2e+02 Score=23.45 Aligned_cols=56 Identities=9% Similarity=0.147 Sum_probs=27.5
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCChhHHHHHHHHH
Q 007194 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK-SGKVDAMFEVFHEM 153 (613)
Q Consensus 98 li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m 153 (613)
+++.+-+.++++++...+..+...+...+..-.|.|-.+|-. .|....+++++..+
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~ 63 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSI 63 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhH
Confidence 344555666666666666666666555555555544444421 23333444444443
No 445
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=22.55 E-value=3.9e+02 Score=21.13 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=17.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007194 307 LSALIDFAGHAGKVEAAFEILQEAKN 332 (613)
Q Consensus 307 ~~~li~~~~~~g~~~~A~~~~~~~~~ 332 (613)
|..++..|...|..++|++++..+..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 56666666666666666666666655
No 446
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=22.30 E-value=7.5e+02 Score=24.24 Aligned_cols=95 Identities=15% Similarity=0.064 Sum_probs=54.8
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCCHHHHHHHHH-HHHcCCChhHHHHHHHHHHhCCCCCCH----H
Q 007194 340 ISYSSLMGACSNAKNWQKALELYEHMK----SIKLKPTVSTMNALIT-ALCDGDQLPKTMEVLSDMKSLGLCPNT----I 410 (613)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p~~----~ 410 (613)
..+-....-|++.|+-+.|.+.++... ..|.+-|++.+..-+. .|..+.-..+-++..+.+.+.|-..+. .
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 344555667788888777777666543 3455666655443332 233444456666666666666655443 2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHH
Q 007194 411 TYSILLVACERKDDVEVGLMLLSQAK 436 (613)
Q Consensus 411 t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (613)
+|..+- |....++.+|-.+|-...
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHc
Confidence 344332 445567777777776554
No 447
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=22.08 E-value=5.9e+02 Score=24.69 Aligned_cols=71 Identities=13% Similarity=0.210 Sum_probs=53.6
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----------cCCHHHH
Q 007194 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ----------SGAVDRA 216 (613)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----------~g~~~~A 216 (613)
.++++.+...++.|.-.++.-+.-.+.+.=.+.+++.+|+.+.... .-|..|+..|+. .|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-----~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-----QRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-----hhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 4688888888889988888777777888888899999999887642 235555555543 4888888
Q ss_pred HHHHHH
Q 007194 217 FDVLAE 222 (613)
Q Consensus 217 ~~~~~~ 222 (613)
.++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 888765
No 448
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=22.08 E-value=4e+02 Score=21.86 Aligned_cols=41 Identities=24% Similarity=0.240 Sum_probs=21.0
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 007194 146 MFEVFHEMVNAGIEPN-VHTYGALIDGCAKAGQVAKAFGAYG 186 (613)
Q Consensus 146 a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~ 186 (613)
..++|..|...|+-.. ...|......+-..|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4555555555544322 2334444555555566666665554
No 449
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=22.01 E-value=6.8e+02 Score=23.64 Aligned_cols=25 Identities=8% Similarity=0.114 Sum_probs=16.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHH
Q 007194 95 FNMLMSVCASSKDSEGAFQVLRLVQ 119 (613)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~l~~~m~ 119 (613)
.+.+++.+.+.+....|..+.+.+.
T Consensus 85 L~~iL~~lL~~~~~~~a~~i~~~y~ 109 (258)
T PF07064_consen 85 LHHILRHLLRRNLDEEALEIASKYR 109 (258)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHhc
Confidence 4556666666666667777666665
No 450
>PRK12356 glutaminase; Reviewed
Probab=21.77 E-value=3.7e+02 Score=26.17 Aligned_cols=32 Identities=13% Similarity=0.116 Sum_probs=14.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCC
Q 007194 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442 (613)
Q Consensus 411 t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p 442 (613)
+.......|+-....+..-.+..-+...|+.|
T Consensus 191 ~Ld~Yf~qCsi~vt~~dLA~~~a~LAn~G~~P 222 (319)
T PRK12356 191 ACDVYTRQCSTLVTARDLATMGATLAAGGVNP 222 (319)
T ss_pred HHHHHHHHhccceeHHHHHHHHHHHHcCCcCC
Confidence 34444445555555444444444444445554
No 451
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=21.77 E-value=4.9e+02 Score=22.62 Aligned_cols=59 Identities=8% Similarity=0.056 Sum_probs=28.3
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007194 119 QEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178 (613)
Q Consensus 119 ~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 178 (613)
.+.|++.+..-. .++..+...++.-.|.++++.+.+.+...+..|--.-+..+.+.|-+
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 344544443322 33444444444555666666666555444444443444555555543
No 452
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=21.63 E-value=2.6e+02 Score=22.15 Aligned_cols=22 Identities=14% Similarity=0.134 Sum_probs=10.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCCH
Q 007194 423 DDVEVGLMLLSQAKEDGVIPNL 444 (613)
Q Consensus 423 g~~~~a~~~~~~~~~~g~~p~~ 444 (613)
+..-.|.++++.+.+.+...+.
T Consensus 14 ~~~~sa~ei~~~l~~~~~~i~~ 35 (116)
T cd07153 14 DGHLTAEEIYERLRKKGPSISL 35 (116)
T ss_pred CCCCCHHHHHHHHHhcCCCCCH
Confidence 3334455555555554443333
No 453
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=21.47 E-value=8.7e+02 Score=24.72 Aligned_cols=176 Identities=15% Similarity=0.034 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHH
Q 007194 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHP-----VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272 (613)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 272 (613)
.+...|++.++-.|++..|+++++.+.-...+ ..-...++--+.-+|.-.+++.+|.+.|..+.- ..-
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~-------yi~ 195 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL-------YIQ 195 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHHh------cCCHHHHHHHHHHHHHCCCCcC
Q 007194 273 TIAINCCSQTGDWEFACSVYDDMTK--------KGVIPDEVFLSALIDFAGH------AGKVEAAFEILQEAKNQGISVG 338 (613)
Q Consensus 273 ~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~p~~~~~~~li~~~~~------~g~~~~A~~~~~~~~~~~~~~~ 338 (613)
..--....+..+.+...+.-++|.. .....|..+...+=+-|.. .|+.+.-.++|...--+=+.|.
T Consensus 196 r~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lkeky~ek~~kmq~gd~~~f~elF~~acPKFIsp~ 275 (404)
T PF10255_consen 196 RTKNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQLKEKYGEKMEKMQRGDEEAFEELFSFACPKFISPV 275 (404)
T ss_pred HhhhhhccccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhhCCCccCCC
Q ss_pred -HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007194 339 -IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380 (613)
Q Consensus 339 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 380 (613)
+..+.................-.++++.....-|+..+|--|
T Consensus 276 ~pp~~~~~~~~~~~e~~~~Ql~~Fl~eV~~q~~l~~lRSyLKL 318 (404)
T PF10255_consen 276 SPPDYDGPSQNKNKEPYRRQLKLFLDEVKQQQKLPTLRSYLKL 318 (404)
T ss_pred CCCCcccccchhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHh
No 454
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=21.34 E-value=1.1e+03 Score=26.15 Aligned_cols=46 Identities=17% Similarity=0.159 Sum_probs=30.0
Q ss_pred HHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007194 286 EFACSVYDDMT-KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (613)
Q Consensus 286 ~~A~~~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 333 (613)
++....+.... ..|+..+......++... .|++..++.+++++...
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~ 227 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIAL 227 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHh
Confidence 44455554443 457766777676666554 58888888888876653
No 455
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=21.29 E-value=4.8e+02 Score=22.68 Aligned_cols=33 Identities=6% Similarity=0.003 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcC
Q 007194 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353 (613)
Q Consensus 321 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 353 (613)
-.|.++++.+.+.+..++..|...-++.+...|
T Consensus 42 lSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 42 ISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred CCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 344444444444433333333333333444433
No 456
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=21.02 E-value=4.2e+02 Score=20.81 Aligned_cols=22 Identities=9% Similarity=0.379 Sum_probs=13.2
Q ss_pred HHHHHHHcCCChhHHHHHHHHH
Q 007194 379 ALITALCDGDQLPKTMEVLSDM 400 (613)
Q Consensus 379 ~li~~~~~~g~~~~A~~l~~~m 400 (613)
.++..|...|+.++|...+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 4455666667777777666664
No 457
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.71 E-value=43 Score=32.43 Aligned_cols=86 Identities=14% Similarity=0.055 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhCC---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCChhHHHHHH
Q 007194 75 KAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC-KLYTTLITTCAKSGKVDAMFEVF 150 (613)
Q Consensus 75 ~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~~ 150 (613)
|.++.|+..|.... ++....|.--.+++.+.++...|..=+....+. .||. .-|-.--.+..-.|++++|...|
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHHHHH
Confidence 44555555554322 223333333344455555555555544444432 2221 12222222333345566666666
Q ss_pred HHHHHCCCCCCH
Q 007194 151 HEMVNAGIEPNV 162 (613)
Q Consensus 151 ~~m~~~g~~~~~ 162 (613)
....+.++.+..
T Consensus 206 ~~a~kld~dE~~ 217 (377)
T KOG1308|consen 206 ALACKLDYDEAN 217 (377)
T ss_pred HHHHhccccHHH
Confidence 665555544433
No 458
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=20.63 E-value=3.2e+02 Score=19.42 Aligned_cols=32 Identities=19% Similarity=0.300 Sum_probs=23.4
Q ss_pred ccChhhhHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007194 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMER 53 (613)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~ 53 (613)
|.-.+-.+.-+|.|+.+|++++|-.+-....+
T Consensus 3 pGad~l~~~~F~~l~~~g~y~eAA~~AA~sP~ 34 (66)
T PF13838_consen 3 PGADDLYVQQFNELFSQGQYEEAAKVAANSPR 34 (66)
T ss_dssp SS-HHHHHHHHHHHHHTT-HHHHHHHHHHSGG
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc
Confidence 44455677788999999999999888776654
No 459
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.51 E-value=9e+02 Score=24.52 Aligned_cols=63 Identities=11% Similarity=0.079 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007194 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAG--IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190 (613)
Q Consensus 128 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 190 (613)
..+.-+.+.|..+|+++.|.+.|.+...-. .+-.+..|-.+|..-.-.|+|........+..+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 346667777888888888888887754321 011233455555555566777666666655544
No 460
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=20.41 E-value=1.4e+03 Score=26.57 Aligned_cols=196 Identities=16% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHhcCChhHHHHHH-HHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH---
Q 007194 239 ALMKACANAGQVDRAREVY-KMIHKYNIKGT---PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI--- 311 (613)
Q Consensus 239 ~ll~~~~~~g~~~~A~~~~-~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li--- 311 (613)
..+.-+...+++.+|..+. ++....++--| ....+.+=...-+.++.+---.++..+.+.++ ....|....
T Consensus 699 ~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDv--t~tmY~~~~~~~ 776 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNEDV--TKTMYKDTYPPS 776 (928)
T ss_pred HHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccccc--cccccccccccc
Q ss_pred ---------HHHHhcCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007194 312 ---------DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK--NWQKALELYEHMKSIKLKPTVSTMNAL 380 (613)
Q Consensus 312 ---------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~l 380 (613)
......+++...-+.+...... ......-+..++.+|++.+ ++++|+.+..++.+.
T Consensus 777 ~~~~~~~~~~~~~~~~KVn~ICdair~~l~~-~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~------------ 843 (928)
T PF04762_consen 777 SEAQPNSNSSTASSESKVNKICDAIRKALEK-PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE------------ 843 (928)
T ss_pred cccccccccCCCccccHHHHHHHHHHHHhcc-cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc------------
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH----------hhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007194 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC----------ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450 (613)
Q Consensus 381 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~----------~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l 450 (613)
+...|.+.++-+.- +.+-...|..-|..| ..+.|+.|=+-+++++.+ ++|+. -..-
T Consensus 844 --------~~~~ae~alkyl~f--LvDvn~Ly~~ALG~YDl~Lal~VAq~SQkDPKEYLPfL~~L~~--l~~~~--rry~ 909 (928)
T PF04762_consen 844 --------DPESAEEALKYLCF--LVDVNKLYDVALGTYDLELALMVAQQSQKDPKEYLPFLQELQK--LPPLY--RRYK 909 (928)
T ss_pred --------ChHHHHHHHhHhee--eccHHHHHHHHhhhcCHHHHHHHHHHhccChHHHHHHHHHHHh--CChhh--eeee
Q ss_pred HHHHHhhHHHHHH
Q 007194 451 IGMCSRRYEKART 463 (613)
Q Consensus 451 i~~~~~~~~~a~~ 463 (613)
||.+.++|++|.+
T Consensus 910 ID~hLkRy~kAL~ 922 (928)
T PF04762_consen 910 IDDHLKRYEKALR 922 (928)
T ss_pred HhhhhCCHHHHHH
No 461
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=20.30 E-value=8.7e+02 Score=24.27 Aligned_cols=192 Identities=11% Similarity=0.018 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhC-----------------------------CCCCHHHHH
Q 007194 46 DLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV-----------------------------PNPTLSTFN 96 (613)
Q Consensus 46 ~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-----------------------------~~~~~~~~~ 96 (613)
+-+-.+.+.. |........+..++..+|+.+.|..+.++. ..-|...|-
T Consensus 27 ~~l~~ll~~~--PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~ffl 104 (360)
T PF04910_consen 27 NALINLLQKN--PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFL 104 (360)
T ss_pred HHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHH
Q ss_pred HHHHH---HHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCChhHHHHHHHHHHHCCCCCC------HHHHH
Q 007194 97 MLMSV---CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA-KSGKVDAMFEVFHEMVNAGIEPN------VHTYG 166 (613)
Q Consensus 97 ~li~~---~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~g~~~~------~~~~~ 166 (613)
++.+. +.+.|.+..|+++.+.+...+..-|+......|+.|+ +.++++--+++.+..... ...+ ...|+
T Consensus 105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~-~~~~~~~~lPn~a~S 183 (360)
T PF04910_consen 105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAK-CYRNWLSLLPNFAFS 183 (360)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhh-hhhhhhhhCccHHHH
Q ss_pred HHHHHHHhcCC--------------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCC
Q 007194 167 ALIDGCAKAGQ--------------VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 232 (613)
Q Consensus 167 ~li~~~~~~g~--------------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 232 (613)
..+..+...+. .+.|...+.+.... -+.+...|+..+ .-..+.+..-............+
T Consensus 184 ~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~----fP~vl~~Ll~~l--~~~~~~~~~~~~~~~~~~~~~~~ 257 (360)
T PF04910_consen 184 IALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILR----FPWVLVPLLDKL--GISPDSSVSNHPHFSPSSWSSEP 257 (360)
T ss_pred HHHHHHHhcCccccccccccccccchhHHHHHHHHHHHH----hHHHHHHHHHHh--ccccchhhhcCCCCcccccccCC
Q ss_pred CHHHHHHHHHHHHh
Q 007194 233 DHITIGALMKACAN 246 (613)
Q Consensus 233 ~~~~~~~ll~~~~~ 246 (613)
.......++..|..
T Consensus 258 ~~~~~~ll~~lYv~ 271 (360)
T PF04910_consen 258 PSDSLKLLTELYVE 271 (360)
T ss_pred chhHHHHHHHHHHH
No 462
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=20.09 E-value=4.8e+02 Score=25.14 Aligned_cols=49 Identities=12% Similarity=0.158 Sum_probs=32.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHHhC
Q 007194 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87 (613)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 87 (613)
+.|+.+.|..+|+...... |.+..+...++.+....+++-+|-.+|-+.
T Consensus 128 ~~Gk~ekA~~lfeHAlala--P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~A 176 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALA--PTNPQILIEMGQFREMHNEIVEADQCYVKA 176 (472)
T ss_pred hccchHHHHHHHHHHHhcC--CCCHHHHHHHhHHHHhhhhhHhhhhhhhee
Confidence 6778888888887777766 666666666665555556666666655543
Done!