Query 007195
Match_columns 613
No_of_seqs 347 out of 1572
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 20:14:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007195.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007195hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1471 Phosphatidylinositol t 100.0 1E-44 2.2E-49 381.2 23.3 277 70-349 6-287 (317)
2 KOG1470 Phosphatidylinositol t 100.0 6.3E-39 1.4E-43 331.3 20.0 227 86-338 27-253 (324)
3 PF00650 CRAL_TRIO: CRAL/TRIO 100.0 5.6E-30 1.2E-34 241.1 9.6 157 155-321 2-159 (159)
4 smart00516 SEC14 Domain in hom 99.9 2.1E-27 4.5E-32 223.4 14.7 154 156-323 5-158 (158)
5 cd00170 SEC14 Sec14p-like lipi 99.9 3.5E-24 7.7E-29 198.6 14.7 145 164-321 13-157 (157)
6 PF13716 CRAL_TRIO_2: Divergen 99.4 2.4E-13 5.1E-18 127.8 2.6 140 164-325 6-147 (149)
7 PF03765 CRAL_TRIO_N: CRAL/TRI 98.7 3.7E-08 8.1E-13 77.6 5.2 47 85-132 1-55 (55)
8 KOG4406 CDC42 Rho GTPase-activ 98.0 2.1E-05 4.5E-10 84.2 9.7 127 167-314 89-215 (467)
9 COG4064 MtrG Tetrahydromethano 84.5 1.1 2.4E-05 36.9 3.2 26 524-549 10-35 (75)
10 PRK01026 tetrahydromethanopter 83.9 1.2 2.6E-05 37.5 3.3 26 524-549 10-35 (77)
11 TIGR01149 mtrG N5-methyltetrah 83.9 1.1 2.4E-05 36.9 3.0 26 524-549 7-32 (70)
12 PF04210 MtrG: Tetrahydrometha 79.3 1.9 4E-05 35.7 2.8 25 525-549 8-32 (70)
13 PF10805 DUF2730: Protein of u 71.1 42 0.00092 30.1 9.7 17 467-483 9-25 (106)
14 PF14555 UBA_4: UBA-like domai 64.2 22 0.00047 26.4 5.4 36 86-130 2-37 (43)
15 PF02845 CUE: CUE domain; Int 59.7 29 0.00063 25.5 5.3 38 86-131 3-40 (42)
16 smart00546 CUE Domain that may 52.5 38 0.00082 24.9 4.9 38 86-131 4-41 (43)
17 KOG1962 B-cell receptor-associ 51.7 70 0.0015 32.5 8.1 73 529-601 114-191 (216)
18 PHA01750 hypothetical protein 48.2 89 0.0019 25.8 6.6 42 561-604 30-71 (75)
19 TIGR02132 phaR_Bmeg polyhydrox 46.1 73 0.0016 31.3 7.0 74 527-601 70-154 (189)
20 TIGR03752 conj_TIGR03752 integ 45.1 1.2E+02 0.0027 34.2 9.5 73 526-598 56-135 (472)
21 KOG0612 Rho-associated, coiled 45.1 74 0.0016 39.7 8.3 58 531-601 443-503 (1317)
22 PRK00117 recX recombination re 44.5 28 0.0006 33.0 4.0 99 27-132 53-153 (157)
23 TIGR03185 DNA_S_dndD DNA sulfu 42.6 1.1E+02 0.0023 36.1 9.2 69 528-598 390-458 (650)
24 PF11221 Med21: Subunit 21 of 39.7 3.2E+02 0.007 25.7 10.3 60 534-601 78-137 (144)
25 PF10368 YkyA: Putative cell-w 39.5 1.2E+02 0.0026 30.4 7.8 78 528-605 31-112 (204)
26 PF05377 FlaC_arch: Flagella a 38.2 96 0.0021 24.8 5.3 35 569-603 1-35 (55)
27 PF08317 Spc7: Spc7 kinetochor 37.0 1.8E+02 0.004 31.1 9.2 75 530-604 178-252 (325)
28 COG1340 Uncharacterized archae 34.9 3E+02 0.0065 29.3 10.0 65 531-604 109-173 (294)
29 PRK09039 hypothetical protein; 34.8 3.1E+02 0.0067 29.8 10.5 29 460-488 17-47 (343)
30 PF12718 Tropomyosin_1: Tropom 34.7 1.5E+02 0.0033 28.0 7.2 69 528-596 34-108 (143)
31 PF13080 DUF3926: Protein of u 33.2 37 0.00081 25.4 2.1 22 578-602 13-34 (44)
32 KOG3313 Molecular chaperone Pr 33.2 2E+02 0.0044 28.3 7.7 62 543-604 22-86 (187)
33 PF10212 TTKRSYEDQ: Predicted 33.1 2.3E+02 0.0049 32.6 9.3 54 530-594 442-509 (518)
34 PF01496 V_ATPase_I: V-type AT 32.9 1.7E+02 0.0038 35.0 9.0 64 539-602 204-271 (759)
35 KOG0249 LAR-interacting protei 31.7 2.9E+02 0.0062 33.0 9.8 75 527-601 171-249 (916)
36 KOG1838 Alpha/beta hydrolase [ 31.5 2.9E+02 0.0062 30.9 9.6 90 168-282 121-216 (409)
37 PF14712 Snapin_Pallidin: Snap 30.9 1.2E+02 0.0026 26.0 5.4 33 571-603 10-42 (92)
38 PF11802 CENP-K: Centromere-as 30.9 3.2E+02 0.007 28.7 9.3 40 527-566 50-89 (268)
39 PHA00687 hypothetical protein 30.2 1.1E+02 0.0025 23.3 4.3 30 553-582 9-48 (56)
40 PF05276 SH3BP5: SH3 domain-bi 30.0 3.6E+02 0.0079 27.9 9.5 54 535-590 97-150 (239)
41 PF04740 LXG: LXG domain of WX 29.3 1.9E+02 0.004 28.4 7.2 114 457-590 46-160 (204)
42 PF13234 rRNA_proc-arch: rRNA- 27.3 2.1E+02 0.0044 29.6 7.4 40 563-602 216-262 (268)
43 PRK12822 phospho-2-dehydro-3-d 26.6 2E+02 0.0043 31.5 7.1 68 159-237 204-271 (356)
44 PF03961 DUF342: Protein of un 26.6 3E+02 0.0065 30.8 9.0 55 530-584 342-398 (451)
45 PHA02562 46 endonuclease subun 25.9 1.8E+02 0.004 33.1 7.4 75 528-603 298-372 (562)
46 PF05529 Bap31: B-cell recepto 25.9 1.9E+02 0.0042 28.3 6.6 62 530-592 119-184 (192)
47 TIGR02132 phaR_Bmeg polyhydrox 25.1 2.1E+02 0.0045 28.3 6.3 13 579-591 142-154 (189)
48 PF04880 NUDE_C: NUDE protein, 24.5 95 0.0021 30.3 3.9 32 558-590 4-35 (166)
49 PF15294 Leu_zip: Leucine zipp 24.4 2E+02 0.0043 30.5 6.5 61 536-607 190-250 (278)
50 PRK14137 recX recombination re 24.0 1.7E+02 0.0036 29.3 5.7 26 109-134 156-181 (195)
51 PLN03214 probable enoyl-CoA hy 24.0 2.4E+02 0.0052 29.4 7.3 21 587-607 250-270 (278)
52 PRK14136 recX recombination re 23.8 96 0.0021 33.2 4.2 24 108-131 278-301 (309)
53 PRK12756 phospho-2-dehydro-3-d 23.8 2.3E+02 0.005 30.9 7.0 68 159-237 203-270 (348)
54 PF10158 LOH1CR12: Tumour supp 23.7 2.6E+02 0.0055 26.2 6.5 62 532-594 52-113 (131)
55 PRK10884 SH3 domain-containing 23.6 5.5E+02 0.012 25.8 9.4 72 534-605 91-169 (206)
56 PF05276 SH3BP5: SH3 domain-bi 22.9 4.1E+02 0.0089 27.5 8.4 74 531-604 144-227 (239)
57 PF05335 DUF745: Protein of un 22.7 1.4E+02 0.003 29.8 4.8 31 557-587 140-177 (188)
58 smart00787 Spc7 Spc7 kinetocho 22.3 4.4E+02 0.0095 28.3 8.9 74 530-603 173-260 (312)
59 PRK09261 phospho-2-dehydro-3-d 22.1 5.1E+02 0.011 28.3 9.3 67 159-236 204-271 (349)
60 PF02631 RecX: RecX family; I 22.0 1.1E+02 0.0024 27.5 3.8 96 29-131 21-118 (121)
61 PF15027 DUF4525: Domain of un 22.0 85 0.0018 29.3 2.9 24 526-549 83-106 (138)
62 COG5104 PRP40 Splicing factor 21.8 2.3E+02 0.0051 31.7 6.6 32 556-587 323-354 (590)
63 COG1842 PspA Phage shock prote 21.5 8.6E+02 0.019 24.8 10.4 60 529-598 59-118 (225)
64 KOG2129 Uncharacterized conser 21.3 5.9E+02 0.013 28.5 9.4 75 528-602 200-288 (552)
65 PF11068 YlqD: YlqD protein; 21.3 4.8E+02 0.01 24.4 7.8 50 556-605 15-72 (131)
66 smart00353 HLH helix loop heli 21.2 2.6E+02 0.0056 20.9 5.2 24 555-578 29-52 (53)
67 PRK11613 folP dihydropteroate 21.1 9.9E+02 0.021 25.2 12.2 44 220-264 174-217 (282)
68 TIGR00034 aroFGH phospho-2-deh 20.6 2.4E+02 0.0052 30.8 6.4 68 159-237 199-266 (344)
69 COG2137 OraA Uncharacterized p 20.6 2.1E+02 0.0045 28.1 5.5 32 101-132 133-164 (174)
70 PF14282 FlxA: FlxA-like prote 20.4 4E+02 0.0088 23.8 6.9 52 526-578 16-68 (106)
71 PF06103 DUF948: Bacterial pro 20.3 4.3E+02 0.0093 22.4 6.9 43 562-604 27-69 (90)
72 PF06667 PspB: Phage shock pro 20.1 4.2E+02 0.0091 22.5 6.5 19 530-548 43-61 (75)
73 PF11471 Sugarporin_N: Maltopo 20.1 1.2E+02 0.0026 24.5 3.1 13 533-545 29-41 (60)
No 1
>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=1e-44 Score=381.17 Aligned_cols=277 Identities=45% Similarity=0.755 Sum_probs=246.9
Q ss_pred ccccccccCCCC--HHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCcccc
Q 007195 70 RVSSVSIEDVRD--VEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMED 147 (613)
Q Consensus 70 ~v~s~~ied~~d--~~E~~al~efR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~l~WRke~~~d~i~~d 147 (613)
.++.+..+++.+ +.+++.++++| |+..+++++...+|+++||||||||+||+++|+++|.+++.||++++.+.+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~i~~lr-~~~~~~~l~~~~~~d~~LlRfLra~~f~ve~a~~~l~~~l~~r~~~~~d~i~~~ 84 (317)
T KOG1471|consen 6 MLAKVAKEELNEITESEEAVIAQLR-WLLQKPHLPNKYDDDFNLLRFLRARKFDVEKAKQMLKRYLNWRKRNKLDEIFED 84 (317)
T ss_pred ccccccccccCCCcHHHHHHHHHHH-HHhhccCCCCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCccHhhc
Confidence 344444544444 55677777777 898999998755555799999999999999999999999999999999999876
Q ss_pred cchHHHHHHHhccCcccccCCCCCCcEEEEecCCCCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCCeE
Q 007195 148 FEFKEINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSST 227 (613)
Q Consensus 148 ~~~~el~~vlk~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pacs~~~~~~v~~~t 227 (613)
.....++.+++|++++|+|++|+||++.+.|..+...++..+...++.++++..+|+.+..+++.|.....++++|++
T Consensus 85 --~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~~ 162 (317)
T KOG1471|consen 85 --FEEDDELLKYYPQGLHGVDKEGRPVYIERLGKIDPKGLLKRTGSLDYLKYHFKEFEKVFKLVLELELKTGERQISGIV 162 (317)
T ss_pred --cccchhhhhhccccccccCCCCCEEEEeccCCCCcccceeeccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeE
Confidence 233444566899999999999999999999999999999999999999999999999999999998888788999999
Q ss_pred EEEeCCCCCCCCcchhHHHHHHHHHHHhccccccccceEEEEecChHHHHHHHHHHhcCChhhhcceEEcCccchHHHHc
Q 007195 228 SILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLE 307 (613)
Q Consensus 228 iIiD~~G~sl~~~~~~~~~lik~i~~ilq~~YPErL~ri~IINaP~~f~~lw~iVKpFLdpkTr~KI~~lg~~~~~~L~e 307 (613)
+|+|++|+++.++....+.+++.++.++|+||||+++++||||+|++|+++|++|+|||+++|++||++++.++.+.|++
T Consensus 163 ~I~Dl~G~~~~~~~~~~~~~~~~~~~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpfL~~kt~~ki~~~~~~~~~~L~k 242 (317)
T KOG1471|consen 163 TIFDLKGVSLSHLLKPAPTLLKKILKILQDNYPERLKRIHIINAPTIFSALWKVVKPFLDEKTRKKIHVLHSKDKESLLK 242 (317)
T ss_pred EEEECCCCcchhHHHHHHHHHHHHHHHHHHhCHHhhceEEEEcCchhHHHHHHHHhccCCHHHHhhheecCCCchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999777778899999
Q ss_pred ccCCCCCccccCCCCCCC---CCCCCccCCCCCCCCHHHHHHHhc
Q 007195 308 IIDARELPEFLGGTCNCA---DQGGCLRSDKGPWQNPEILKMVLN 349 (613)
Q Consensus 308 ~Id~e~LP~~yGGt~~~~---~~ggcl~~~~gpW~dp~~~k~~~~ 349 (613)
+|+++.||.+|||++.+. ..++|..++.+||.++.+.+....
T Consensus 243 ~i~~~~LP~~yGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (317)
T KOG1471|consen 243 YIPPEVLPEEYGGTCGDLDDPNGGGCDLSDEGPWKEPEIKKGKQE 287 (317)
T ss_pred hCCHhhCccccCCCccccccccCCcCccccccccccccccccccc
Confidence 999999999999999996 357799999999998887654433
No 2
>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=6.3e-39 Score=331.31 Aligned_cols=227 Identities=29% Similarity=0.458 Sum_probs=190.4
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCcccccchHHHHHHHhccCcccc
Q 007195 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYH 165 (613)
Q Consensus 86 ~al~efR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~l~WRke~~~d~i~~d~~~~el~~vlk~~p~~~~ 165 (613)
+.+.+.+..+......-...+.+.|+||||||||||+++|.+|+.++|.||+++++...+ ...|+...+..+.++++
T Consensus 27 ~k~~~~~~~~~pl~~~~~~~~~d~cllRfLrAr~wnv~kA~kml~~tL~WR~~~~~~~~~---~~~Ev~~e~~tGK~yi~ 103 (324)
T KOG1470|consen 27 DKINSVKKLLGPLTEKESKWCSDACLLRFLRARKWNVKKASKMLSNTLKWRRSFGPEEVI---EADEVAAELETGKAYIL 103 (324)
T ss_pred HHHHHHHHhhcchhhhhHhcCcHHHHHHHHHHcCCcHHHHHHHHHHHhHHHHhcCCcccc---CHHHHHHHhhcCcEEEe
Confidence 345555555521111111233336999999999999999999999999999999987732 33557667888999999
Q ss_pred cCCCCCCcEEEEecCCCCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCCeEEEEeCCCCCCCCcchhHH
Q 007195 166 GVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKNAR 245 (613)
Q Consensus 166 G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pacs~~~~~~v~~~tiIiD~~G~sl~~~~~~~~ 245 (613)
|.|++||||+|+++....++. .+.+++.+++||++|.++..+.+ .++++++++|++|+|++|++ +
T Consensus 104 G~D~~gRPVl~~~~~~~~qn~----~t~~~~~r~~Vy~mE~Ai~~lp~--------~qe~~~~L~D~~~fs~sN~d---~ 168 (324)
T KOG1470|consen 104 GHDKDGRPVLYLRPRPHRQNT----KTQKELERLLVYTLENAILFLPP--------GQEQFVWLFDLTGFSMSNPD---I 168 (324)
T ss_pred cccCCCCeEEEEecCCCCCCC----CCHHHHHHHHHHHHHHHHHhCCC--------CcceEEEEEecccCcccCCC---c
Confidence 999999999999666555554 58999999999999999987544 58889999999999999888 7
Q ss_pred HHHHHHHHHhccccccccceEEEEecChHHHHHHHHHHhcCChhhhcceEEcCccchHHHHcccCCCCCccccCCCCCCC
Q 007195 246 ELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGTCNCA 325 (613)
Q Consensus 246 ~lik~i~~ilq~~YPErL~ri~IINaP~~f~~lw~iVKpFLdpkTr~KI~~lg~~~~~~L~e~Id~e~LP~~yGGt~~~~ 325 (613)
...+.+++++|+||||||+..+|+|+||+|..+|++++|||||+|++||.|+.+. ..|.+|||+++||..|||+..+.
T Consensus 169 ~~~k~~~~~lq~hYPErLg~a~l~~~P~iF~~~wkiikpflDp~t~~Kv~F~~~~--~~l~~~~d~~~l~s~~GG~~~~~ 246 (324)
T KOG1470|consen 169 KFLKELLHILQDHYPERLGKALLVNAPWIFQPFWKIIKPFLDPKTASKVKFVEPK--DDLSEYFDESQLPSLFGGKLLFE 246 (324)
T ss_pred HHHHHHHHHHHHhChHHhhhhhhcCChHHHHHHHHHhhhccChhhhceeEEecCh--hHHHhhCCccccchhhCCCcccc
Confidence 8999999999999999999999999999999999999999999999999999764 55999999999999999988886
Q ss_pred CCCCCccCCCCCC
Q 007195 326 DQGGCLRSDKGPW 338 (613)
Q Consensus 326 ~~ggcl~~~~gpW 338 (613)
+ .++.+|
T Consensus 247 y------~~e~~~ 253 (324)
T KOG1470|consen 247 Y------THEEYW 253 (324)
T ss_pred c------CCcchh
Confidence 5 345577
No 3
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=99.96 E-value=5.6e-30 Score=241.14 Aligned_cols=157 Identities=37% Similarity=0.585 Sum_probs=131.1
Q ss_pred HHHhccCcccccCCCCCCcEEEEecCCCCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCCeEEEEeCCC
Q 007195 155 EVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQG 234 (613)
Q Consensus 155 ~vlk~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pacs~~~~~~v~~~tiIiD~~G 234 (613)
++.+.++.+++|+|++||||+|++++++|+.+ .+.+++++++++.+|.+++...+ ..+++++++|+|++|
T Consensus 2 ~~~~~~~~~~~g~D~~gr~v~~~~~~~~~~~~----~~~~~~~~~~~~~~E~~~~~~~~------~~~~~~~~~iiD~~g 71 (159)
T PF00650_consen 2 EILKSGPFYLHGRDKDGRPVIYIRLGRFDPKK----FSPEDVIRFFVYLLERMLKRMPE------GGQVEGIVVIIDLSG 71 (159)
T ss_dssp HHHTTSCEEEEEE-TTS-EEEEEEGTT--HHT----S-HHHHHHHHHHHHHHHHHTHHH------TSHHH-EEEEEE-TT
T ss_pred HHHCCeeEEECCCCCCcCEEEEEEcccCCCCc----CCHHHHHHHHHHHHHHHHhhhcc------cccceeEEEEEeCCC
Confidence 35788999999999999999999999999986 56889999999999999865321 356899999999999
Q ss_pred CCCCCcchhHHHHHHHHHHHhccccccccceEEEEecChHHHHHHHHHHhcCChhhhcceEEcCc-cchHHHHcccCCCC
Q 007195 235 VGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGN-KYQSKLLEIIDARE 313 (613)
Q Consensus 235 ~sl~~~~~~~~~lik~i~~ilq~~YPErL~ri~IINaP~~f~~lw~iVKpFLdpkTr~KI~~lg~-~~~~~L~e~Id~e~ 313 (613)
+++++++....++++.+++++|++||++++++||||+|++|+++|+++++||+++|++||+|+++ ++.+.|.++||+++
T Consensus 72 ~~~~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~~l~~~i~~~~ 151 (159)
T PF00650_consen 72 FSLSNFDWWPISFLKKIIQLLQDHYPERLGKIYIINAPWFFRVLWKIVKPFLSPKTREKIVFHSGSDWKAKLKEYIDPEQ 151 (159)
T ss_dssp --HHHHHCHHHHHHHHHHHHHHHHSTTTEEEEEEES--TTHHHHHHHHGGGS-HHHHCTEEEECTTCHCHHHCCCSTGGG
T ss_pred ceEeccccchhhhhhhhhhhhcccCCccceeEEEEecChhhhhhHhHHHhhcCHhhheeEEEECCcccHHHHHhhCCHhH
Confidence 99998875558999999999999999999999999999999999999999999999999999964 55578999999999
Q ss_pred CccccCCC
Q 007195 314 LPEFLGGT 321 (613)
Q Consensus 314 LP~~yGGt 321 (613)
||.+|||+
T Consensus 152 lP~~~GG~ 159 (159)
T PF00650_consen 152 LPVEYGGT 159 (159)
T ss_dssp SBGGGTSS
T ss_pred CchhcCCC
Confidence 99999996
No 4
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.95 E-value=2.1e-27 Score=223.42 Aligned_cols=154 Identities=40% Similarity=0.651 Sum_probs=139.2
Q ss_pred HHhccCcccccCCCCCCcEEEEecCCCCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCCeEEEEeCCCC
Q 007195 156 VLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGV 235 (613)
Q Consensus 156 vlk~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pacs~~~~~~v~~~tiIiD~~G~ 235 (613)
...+.++++ |+|++||||+|+++++++++. .+.+++++++++.+|.++... ....+++++++|+|++|+
T Consensus 5 ~~~~~~~~~-g~D~~GrpV~~~~~~~~~~~~----~~~~~~~~~~~~~~e~~~~~~------~~~~~~~~~~~i~D~~~~ 73 (158)
T smart00516 5 GKAYIPGGR-GYDKDGRPVLIFRAGRFDLKS----VTLEELLRYLVYVLEKILQRE------KKTGGIEGFTVIFDLKGL 73 (158)
T ss_pred HHHhcCCCC-CCCCCcCEEEEEeccccccCc----CCHHHHHHHHHHHHHHHHHHH------hcCCCeeeEEEEEECCCC
Confidence 345667776 999999999999999998765 689999999999999988641 135678999999999999
Q ss_pred CCCCcchhHHHHHHHHHHHhccccccccceEEEEecChHHHHHHHHHHhcCChhhhcceEEcCccchHHHHcccCCCCCc
Q 007195 236 GLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELP 315 (613)
Q Consensus 236 sl~~~~~~~~~lik~i~~ilq~~YPErL~ri~IINaP~~f~~lw~iVKpFLdpkTr~KI~~lg~~~~~~L~e~Id~e~LP 315 (613)
++.+++ .+.++.++++++++||++++++||||+|++|+++|+++++|+++++++||+++++++.+.|.++||+++||
T Consensus 74 ~~~~~~---~~~lk~~~~~~~~~yp~~l~~i~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~L~~~i~~~~lP 150 (158)
T smart00516 74 SMSNPD---LSVLRKILKILQDHYPERLGKVLIINPPWFFRVLWKIIKPFLDEKTREKIRFVGNDSKEELLEYIDPEQLP 150 (158)
T ss_pred Cccccc---HHHHHHHHHHHHHHhHHHhCeEEEECCCHHHHHHHHHHHhhcChhhhccEEEeCCCCHHHHHhhCCHhhCc
Confidence 999865 78999999999999999999999999999999999999999999999999999986678999999999999
Q ss_pred cccCCCCC
Q 007195 316 EFLGGTCN 323 (613)
Q Consensus 316 ~~yGGt~~ 323 (613)
.+|||++.
T Consensus 151 ~~~GG~~~ 158 (158)
T smart00516 151 EELGGTLD 158 (158)
T ss_pred HhhCCCCC
Confidence 99999974
No 5
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.91 E-value=3.5e-24 Score=198.61 Aligned_cols=145 Identities=39% Similarity=0.619 Sum_probs=128.6
Q ss_pred cccCCCCCCcEEEEecCCCCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCCeEEEEeCCCCCCCCcchh
Q 007195 164 YHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKN 243 (613)
Q Consensus 164 ~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pacs~~~~~~v~~~tiIiD~~G~sl~~~~~~ 243 (613)
..|.|++||||++++++..++... ...+++++++++.+|..+..... ...++++|+|++|+++.++. .
T Consensus 13 ~~~~D~~gr~V~~~~~~~~~~~~~---~~~~~~~~~~~~~~e~~~~~~~~--------~~~~~~~i~D~~~~~~~~~~-~ 80 (157)
T cd00170 13 LGGRDKEGRPVLIIRAGNKDLSKS---LDSEELLRYLVYTLEKLLQEDDE--------QVEGFVVIIDLKGLSLSHLL-P 80 (157)
T ss_pred cCCCCCCcCEEEEEecCCcchhhc---CCHHHHHHHHHHHHHHHHhhhhh--------cccceEEEEECCCCChhccc-h
Confidence 345699999999999997666543 23489999999999999875322 23799999999999999986 5
Q ss_pred HHHHHHHHHHHhccccccccceEEEEecChHHHHHHHHHHhcCChhhhcceEEcCccchHHHHcccCCCCCccccCCC
Q 007195 244 ARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGT 321 (613)
Q Consensus 244 ~~~lik~i~~ilq~~YPErL~ri~IINaP~~f~~lw~iVKpFLdpkTr~KI~~lg~~~~~~L~e~Id~e~LP~~yGGt 321 (613)
..+.++.++++++++||++++++||||+|++|+.+|+++++|+++++++||++++++ .+.|.++||+++||.+|||+
T Consensus 81 ~~~~~k~~~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~-~~~L~~~i~~~~Lp~~~GG~ 157 (157)
T cd00170 81 DPSLLKKILKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKKIVFLGSD-KEELLKYIDKEQLPEEYGGT 157 (157)
T ss_pred hHHHHHHHHHHHHHhChHhhCeEEEECCCHhHHHHHHHHHHhcCHhhhhhEEEecCC-HHHHHhhCChhhCcHhhCCC
Confidence 689999999999999999999999999999999999999999999999999999875 58999999999999999996
No 6
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=99.36 E-value=2.4e-13 Score=127.81 Aligned_cols=140 Identities=20% Similarity=0.335 Sum_probs=93.4
Q ss_pred cccCCCCCCcEEEEecCCCCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCCeEEEEeCCCCCCCCcchh
Q 007195 164 YHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKN 243 (613)
Q Consensus 164 ~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pacs~~~~~~v~~~tiIiD~~G~sl~~~~~~ 243 (613)
..|+|++||||+++...++ ++. ...+.++.|++..+... -...+.++|+|+.|++..+..
T Consensus 6 ~gG~d~~g~pV~~~~~~~~-~~~----~~~~~ll~yl~~~l~~~-------------~~~~~f~vVid~~~~~~~~~~-- 65 (149)
T PF13716_consen 6 PGGRDREGRPVVVFIASRL-PSS----DDLERLLLYLLSTLSEE-------------VVDKPFSVVIDHTGFSRSSEP-- 65 (149)
T ss_dssp EEEEBTTS-EEEEEEGGG--C-T----THHHHHHHHHHHHH-TT-------------TTTS-EEEEEE-TT--GGG----
T ss_pred ecccCCCcCEEEEEECCcC-cch----hhHHHHHHHHHHhhhHH-------------hcCCCEEEEEEcCCCccccCC--
Confidence 3589999999999997777 432 35566666665544111 113469999999999875432
Q ss_pred HHHHHHHHHHHhccccccccceEEEEecChHHHHHH-HHHHhcCChhh-hcceEEcCccchHHHHcccCCCCCccccCCC
Q 007195 244 ARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLW-NTVKSFLDPKT-TSKIHVLGNKYQSKLLEIIDARELPEFLGGT 321 (613)
Q Consensus 244 ~~~lik~i~~ilq~~YPErL~ri~IINaP~~f~~lw-~iVKpFLdpkT-r~KI~~lg~~~~~~L~e~Id~e~LP~~yGGt 321 (613)
....++.+.+.+...|+..|+++||||++++++.++ .+.+++++.+. ..||.++.+ .++|.++||+++||..+||+
T Consensus 66 ~~~~l~~~~~~l~~~~~~nl~~vyiv~p~~~~k~~~~~~~~~~~~~~~~~~kv~~~~s--l~~L~~~i~~~qL~~~lp~~ 143 (149)
T PF13716_consen 66 SLSWLKQLYKLLPRKYKKNLKKVYIVHPNWFLKKILATLLRPFVSSKFWKKKVVYVSS--LSELSKHIDPSQLPESLPGV 143 (149)
T ss_dssp -HHHHHHTTTSS-HHHHHTEEEEEEES--HHHHHHHHHTTTTGGGGTT--TTEEEESS--TCGGGGTSGGGG------HH
T ss_pred chHHHHHHHHHHHHHHhhceEEEEEECCCHHHHHHHHHHhcccccccccceEEEEECC--HHHHHhhCCHHHhcccCCCE
Confidence 367899999999999999999999999999999999 55567778888 899998855 48899999999999999998
Q ss_pred CCCC
Q 007195 322 CNCA 325 (613)
Q Consensus 322 ~~~~ 325 (613)
...+
T Consensus 144 ~~~d 147 (149)
T PF13716_consen 144 LQYD 147 (149)
T ss_dssp H---
T ss_pred EecC
Confidence 7654
No 7
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....
Probab=98.65 E-value=3.7e-08 Score=77.55 Aligned_cols=47 Identities=40% Similarity=0.591 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhC--------CCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 007195 85 LQAVDAFRQSLIMD--------ELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (613)
Q Consensus 85 ~~al~efR~~L~~~--------~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~ 132 (613)
+++|++|++.|... ......++| .+||||||||+||+++|.+||.+|
T Consensus 1 k~~l~~l~~~l~~~~~~~~~~~~~~~~~~~d-~~llRFLRARkf~v~~A~~mL~~t 55 (55)
T PF03765_consen 1 KQKLKQLREHLSELDEKAPGLWDDEKEDHDD-NFLLRFLRARKFDVEKAFKMLKKT 55 (55)
T ss_dssp HHHHHHHHHHHHH--GGGTHHHTTHTSS-SH-HHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccchhcccccccCCCCH-HHHHHHHHHccCCHHHHHHHHHhC
Confidence 47899999999873 334556677 599999999999999999999875
No 8
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=98.03 E-value=2.1e-05 Score=84.24 Aligned_cols=127 Identities=22% Similarity=0.287 Sum_probs=98.9
Q ss_pred CCCCCCcEEEEecCCCCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCCeEEEEeCCCCCCCCcchhHHH
Q 007195 167 VDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSKNARE 246 (613)
Q Consensus 167 ~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pacs~~~~~~v~~~tiIiD~~G~sl~~~~~~~~~ 246 (613)
.|++||+|+++...++.+.+- ..-.++++|.++.++..++. ..++++=-.|+...+.. .++
T Consensus 89 ~D~~gr~iivv~a~rlp~~~e---ld~~~li~~~v~~id~~Ve~--------------DYt~vYfh~gl~s~nkp--~l~ 149 (467)
T KOG4406|consen 89 KDKQGRKIIVVYACRLPSSSE---LDDIRLISYLVYTIDKYVEN--------------DYTLVYFHHGLPSDNKP--YLQ 149 (467)
T ss_pred ccccCCeeEEEEEecCCchhh---hhhHHHHHHHHHHHHHHHhc--------------cceeeehhcCCcccccc--hHH
Confidence 799999999998888776541 11223899999999998864 14555555566555443 366
Q ss_pred HHHHHHHHhccccccccceEEEEecChHHHHHHHHHHhcCChhhhcceEEcCccchHHHHcccCCCCC
Q 007195 247 LILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDAREL 314 (613)
Q Consensus 247 lik~i~~ilq~~YPErL~ri~IINaP~~f~~lw~iVKpFLdpkTr~KI~~lg~~~~~~L~e~Id~e~L 314 (613)
++....+-+..+|=-.++.+|+|.+-|+.+++|+++|||++.|-..||+.+ ++.++|.++|.-+.|
T Consensus 150 ~l~~aYke~Dr~~~KNlKalYvvHptwfikvi~n~~kplIS~KF~rKi~Y~--n~lseL~~~l~l~rL 215 (467)
T KOG4406|consen 150 LLFDAYKELDRNFKKNLKALYVVHPTWFIKVIWNLFKPLISLKFTRKIIYF--NSLSELFEALKLNRL 215 (467)
T ss_pred HHHHHHHHHHHHHhhhhhheEEecHHHHHHHHHHHHhhhcchhhhceeEEe--ehHHHHHHhhhhhhh
Confidence 666666666677888999999999999999999999999999999999998 567899998885544
No 9
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=84.53 E-value=1.1 Score=36.93 Aligned_cols=26 Identities=35% Similarity=0.563 Sum_probs=22.6
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHhc
Q 007195 524 SLTEVDLLSSVTKRLSELEEKVDTLQ 549 (613)
Q Consensus 524 ~~~~~~~~~~~~kRl~eLEekv~~L~ 549 (613)
..+++|+|..+.+||.|+|+||+...
T Consensus 10 v~v~~~dfne~~kRLdeieekvef~~ 35 (75)
T COG4064 10 VVVDPDDFNEIHKRLDEIEEKVEFVN 35 (75)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHhhH
Confidence 35889999999999999999998643
No 10
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=83.88 E-value=1.2 Score=37.52 Aligned_cols=26 Identities=31% Similarity=0.464 Sum_probs=22.8
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHhc
Q 007195 524 SLTEVDLLSSVTKRLSELEEKVDTLQ 549 (613)
Q Consensus 524 ~~~~~~~~~~~~kRl~eLEekv~~L~ 549 (613)
..++.++|..+++||.++||||+.-+
T Consensus 10 viv~~~d~~~i~~rLD~iEeKVEftn 35 (77)
T PRK01026 10 VVVDPKDFKEIQKRLDEIEEKVEFTN 35 (77)
T ss_pred eecCHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999998643
No 11
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=83.86 E-value=1.1 Score=36.94 Aligned_cols=26 Identities=42% Similarity=0.593 Sum_probs=22.6
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHhc
Q 007195 524 SLTEVDLLSSVTKRLSELEEKVDTLQ 549 (613)
Q Consensus 524 ~~~~~~~~~~~~kRl~eLEekv~~L~ 549 (613)
.+++.+++..+++||.++|+||+.-+
T Consensus 7 v~v~~~d~~~i~~rLd~iEeKVEf~~ 32 (70)
T TIGR01149 7 VFVEPDEFNEVMKRLDEIEEKVEFVN 32 (70)
T ss_pred eecCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35888999999999999999998643
No 12
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=79.27 E-value=1.9 Score=35.70 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=22.0
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhc
Q 007195 525 LTEVDLLSSVTKRLSELEEKVDTLQ 549 (613)
Q Consensus 525 ~~~~~~~~~~~kRl~eLEekv~~L~ 549 (613)
.++.++|..+++||.++|+||+.-+
T Consensus 8 iv~~~~~~~i~~rLd~iEeKvEf~~ 32 (70)
T PF04210_consen 8 IVDPDDFNEIMKRLDEIEEKVEFTN 32 (70)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHhHH
Confidence 5789999999999999999998543
No 13
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=71.12 E-value=42 Score=30.07 Aligned_cols=17 Identities=24% Similarity=0.470 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q 007195 467 WAAVMAFFMMFVTLFRS 483 (613)
Q Consensus 467 ~~~~~~~~m~~~~~~~~ 483 (613)
|..+.+++..+++++..
T Consensus 9 w~ii~a~~~~~~~~~~~ 25 (106)
T PF10805_consen 9 WGIIWAVFGIAGGIFWL 25 (106)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 45566666666666663
No 14
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=64.21 E-value=22 Score=26.40 Aligned_cols=36 Identities=17% Similarity=0.412 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Q 007195 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWA 130 (613)
Q Consensus 86 ~al~efR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~ 130 (613)
+.|.+|..... . ++ ..-..||.+.+||++.|+..+-
T Consensus 2 e~i~~F~~iTg-------~-~~-~~A~~~L~~~~wdle~Av~~y~ 37 (43)
T PF14555_consen 2 EKIAQFMSITG-------A-DE-DVAIQYLEANNWDLEAAVNAYF 37 (43)
T ss_dssp HHHHHHHHHH--------S-SH-HHHHHHHHHTTT-HHHHHHHHH
T ss_pred HHHHHHHHHHC-------c-CH-HHHHHHHHHcCCCHHHHHHHHH
Confidence 56778887662 1 23 4789999999999999998764
No 15
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=59.71 E-value=29 Score=25.49 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 007195 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (613)
Q Consensus 86 ~al~efR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~ 131 (613)
+.|+++++.+ | ..+. ..+..-|.++++|++.|+.+|-+
T Consensus 3 ~~v~~L~~mF------P-~~~~-~~I~~~L~~~~~~ve~ai~~LL~ 40 (42)
T PF02845_consen 3 EMVQQLQEMF------P-DLDR-EVIEAVLQANNGDVEAAIDALLE 40 (42)
T ss_dssp HHHHHHHHHS------S-SS-H-HHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHC------C-CCCH-HHHHHHHHHcCCCHHHHHHHHHc
Confidence 4667777666 2 3344 47899999999999999998864
No 16
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=52.48 E-value=38 Score=24.94 Aligned_cols=38 Identities=16% Similarity=0.333 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 007195 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (613)
Q Consensus 86 ~al~efR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~ 131 (613)
+.++++++.+ | ..++ ..+.+.|+++++|++.|+..|.+
T Consensus 4 ~~v~~L~~mF------P-~l~~-~~I~~~L~~~~g~ve~~i~~LL~ 41 (43)
T smart00546 4 EALHDLKDMF------P-NLDE-EVIKAVLEANNGNVEATINNLLE 41 (43)
T ss_pred HHHHHHHHHC------C-CCCH-HHHHHHHHHcCCCHHHHHHHHHc
Confidence 4566676655 3 2344 47889999999999999988753
No 17
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=51.66 E-value=70 Score=32.51 Aligned_cols=73 Identities=21% Similarity=0.185 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHHHHHH-----HHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007195 529 DLLSSVTKRLSELEEK-----VDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQ 601 (613)
Q Consensus 529 ~~~~~~~kRl~eLEek-----v~~L~~KP~~mP~EKEe~L~aa~~RvdalE~eL~~TKKaL~~al~kQ~El~ayie~~ 601 (613)
+.++..+.+|..|++- -+....++.+=+-.+|+=........+-||.||+++++.|+.+-.+=++|.-+.|..
T Consensus 114 ~R~~~ll~~l~~l~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~ 191 (216)
T KOG1962|consen 114 RRLHTLLRELATLRANEKAMKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGL 191 (216)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4567788888888871 233333334444445666777788899999999999999987655555555555443
No 18
>PHA01750 hypothetical protein
Probab=48.24 E-value=89 Score=25.78 Aligned_cols=42 Identities=21% Similarity=0.339 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 007195 561 ELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEA 604 (613)
Q Consensus 561 e~L~aa~~RvdalE~eL~~TKKaL~~al~kQ~El~ayie~~k~~ 604 (613)
.+|.+|+.-| +-+||.--++-++++-.||.+|-+-++..|++
T Consensus 30 q~lkdAvkeI--V~~ELdNL~~ei~~~kikqDnl~~qv~eik~k 71 (75)
T PHA01750 30 QALKDAVKEI--VNSELDNLKTEIEELKIKQDELSRQVEEIKRK 71 (75)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 5677777644 56788888888888889999988888776654
No 19
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=46.10 E-value=73 Score=31.33 Aligned_cols=74 Identities=23% Similarity=0.309 Sum_probs=43.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhc-----------CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 007195 527 EVDLLSSVTKRLSELEEKVDTLQ-----------AKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLL 595 (613)
Q Consensus 527 ~~~~~~~~~kRl~eLEekv~~L~-----------~KP~~mP~EKEe~L~aa~~RvdalE~eL~~TKKaL~~al~kQ~El~ 595 (613)
+.+++..|-.|+-+||+||+.|. ..--.=|.+|+++ +.-=.||.+||.-+.+-=.+|+-----|.||-
T Consensus 70 Sr~DiarvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v-~~~~q~~~~l~~K~D~~L~llE~~~~~~~~~~ 148 (189)
T TIGR02132 70 TKEDIANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDV-TKLKQDIKSLDKKLDKILELLEGQQKTQDELK 148 (189)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHH-HHHHHHHHHHHHHHHHHHHHHhcCccchhHHH
Confidence 45566777777777776665543 2222456677663 55566788888777766666663333444444
Q ss_pred HHHHHH
Q 007195 596 AYIDRQ 601 (613)
Q Consensus 596 ayie~~ 601 (613)
+.|.++
T Consensus 149 ~~~~~~ 154 (189)
T TIGR02132 149 ETIQKQ 154 (189)
T ss_pred HHHHHH
Confidence 444443
No 20
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=45.09 E-value=1.2e+02 Score=34.20 Aligned_cols=73 Identities=19% Similarity=0.288 Sum_probs=51.2
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHH--HHH-----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 007195 526 TEVDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLH--AAV-----CRVDALEAELIATKKALHEALMRQEDLLAYI 598 (613)
Q Consensus 526 ~~~~~~~~~~kRl~eLEekv~~L~~KP~~mP~EKEe~L~--aa~-----~RvdalE~eL~~TKKaL~~al~kQ~El~ayi 598 (613)
+..|-+..++-++.+|+.++..|...-...=.|.|+|-+ .++ .+|++-..||+.....|.+...+...++.-+
T Consensus 56 TP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 56 TPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678889999999999999999998776666667776644 111 2344556677777777776666555555554
No 21
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=45.08 E-value=74 Score=39.67 Aligned_cols=58 Identities=26% Similarity=0.347 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCChhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007195 531 LSSVTKRLSELEEKVDTLQAKPSEMPYEKEEL---LHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQ 601 (613)
Q Consensus 531 ~~~~~kRl~eLEekv~~L~~KP~~mP~EKEe~---L~aa~~RvdalE~eL~~TKKaL~~al~kQ~El~ayie~~ 601 (613)
+..-++.++.|++++.+++ |+|+| |+.++.+.+..|++|..+.+||. |.++-++-++.
T Consensus 443 l~~~~~~~~~~~~~~~~~~--------~~~~~~keL~e~i~~lk~~~~el~~~q~~l~-----q~~~ke~~ek~ 503 (1317)
T KOG0612|consen 443 LVNEMQEKEKLDEKCQAVA--------ELEEMDKELEETIEKLKSEESELQREQKALL-----QHEQKEVEEKL 503 (1317)
T ss_pred hhhHHHHhhhHHHHHHHHh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhhHHHHHH
Confidence 5556899999999999998 78887 89999999999999999777763 44444444433
No 22
>PRK00117 recX recombination regulator RecX; Reviewed
Probab=44.45 E-value=28 Score=32.98 Aligned_cols=99 Identities=16% Similarity=0.186 Sum_probs=51.5
Q ss_pred ccCCCChhHh--hhhccchhhHhhhccchhhhhhhcccCCCCCCCccccccccCCCCHHHHHHHHHHHHHHHhCCCCCCC
Q 007195 27 SDFENSEDER--RTRIGSLKKKALNASTKFKHSLKKKSSRRKSDGRVSSVSIEDVRDVEELQAVDAFRQSLIMDELLPER 104 (613)
Q Consensus 27 ~~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~s~~k~~~~r~~~~~v~s~~ied~~d~~E~~al~efR~~L~~~~~Lp~~ 104 (613)
.+...-+|++ ..-+.+. ...-....++++.|.+|| .+..+-.-.++++..++++.+...+..........+.
T Consensus 53 ~~~~~ldD~~~a~~~~~~~-~~~~~g~~~I~~~L~~kG----i~~~~I~~~l~~~~~d~~e~a~~~~~k~~~~~~~~~~- 126 (157)
T PRK00117 53 KEEGLLDDERFAESFVRSR-ARKGYGPRRIRQELRQKG----VDREIIEEALAELDIDWEELARELARKKFRRPLPDDA- 126 (157)
T ss_pred HHcCCCCHHHHHHHHHHHH-HhCCchHHHHHHHHHHcC----CCHHHHHHHHHHcCccHHHHHHHHHHHHcCCCCCCCH-
Confidence 3344566666 2223332 112234567889999988 4444433334444322333333333332211110000
Q ss_pred CCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 007195 105 HDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (613)
Q Consensus 105 ~dD~~~LLRFLrArkfDvekA~~~l~~~ 132 (613)
..-.-+.+||..++|+.+.+...|...
T Consensus 127 -~~k~Ki~~~L~rkGF~~~~I~~~l~~~ 153 (157)
T PRK00117 127 -KEKAKLVRFLARRGFSMDVIQRVLRNA 153 (157)
T ss_pred -HHHHHHHHHHHHCCCCHHHHHHHHHhh
Confidence 112478999999999999887777654
No 23
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=42.63 E-value=1.1e+02 Score=36.07 Aligned_cols=69 Identities=29% Similarity=0.357 Sum_probs=45.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 007195 528 VDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYI 598 (613)
Q Consensus 528 ~~~~~~~~kRl~eLEekv~~L~~KP~~mP~EKEe~L~aa~~RvdalE~eL~~TKKaL~~al~kQ~El~ayi 598 (613)
...+..+.+++.+||+..+.|..|=...|.+ +-+..-..+++.++.+|.+.+..+.....+-+++-.-|
T Consensus 390 ~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~--e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i 458 (650)
T TIGR03185 390 QDAKSQLLKELRELEEELAEVDKKISTIPSE--EQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAI 458 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888999999999999999998888864 24455555555555555555555544444433333333
No 24
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=39.67 E-value=3.2e+02 Score=25.68 Aligned_cols=60 Identities=25% Similarity=0.410 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007195 534 VTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQ 601 (613)
Q Consensus 534 ~~kRl~eLEekv~~L~~KP~~mP~EKEe~L~aa~~RvdalE~eL~~TKKaL~~al~kQ~El~ayie~~ 601 (613)
++..-..+|.-++.| |.+..--|+- ..||+.||.|+...-+-|.+++.+=++|++-|+..
T Consensus 78 Ii~kakqIe~LIdsL----Pg~~~see~Q----~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 137 (144)
T PF11221_consen 78 IIRKAKQIEYLIDSL----PGIEVSEEEQ----LKRIKELEEENEEAEEELQEAVKEAEELLKQVQEL 137 (144)
T ss_dssp HHHHHHHHHHHHHHS----TTSSS-HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC----CCCCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444556666655 4444333322 28999999999999999999999999999988764
No 25
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=39.46 E-value=1.2e+02 Score=30.41 Aligned_cols=78 Identities=29% Similarity=0.328 Sum_probs=55.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCCC----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 007195 528 VDLLSSVTKRLSELEEKVDTLQAKPSEMP----YEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEE 603 (613)
Q Consensus 528 ~~~~~~~~kRl~eLEekv~~L~~KP~~mP----~EKEe~L~aa~~RvdalE~eL~~TKKaL~~al~kQ~El~ayie~~k~ 603 (613)
+..+....+-|.+||++...|-.+=-+.. .+=......|+.-|+.=|..|.+-|+||.++--....+-.||++-+.
T Consensus 31 Ek~~~~~~k~L~~lE~~~q~lY~~ii~~~~~d~~~v~~~~~~a~~nv~~R~k~l~~Ek~ai~~a~~e~~~~~~~i~ki~d 110 (204)
T PF10368_consen 31 EKPFKEQQKKLNELEKKEQELYEQIIQLGKDDNDEVKKLSDEALKNVDEREKELKKEKEAIEKAKEEFKKAKKYIDKIED 110 (204)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTTGG---G-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34678889999999999999988863333 34567788999999999999999999999999999999999987764
Q ss_pred hh
Q 007195 604 AK 605 (613)
Q Consensus 604 ~k 605 (613)
.+
T Consensus 111 ~~ 112 (204)
T PF10368_consen 111 EK 112 (204)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 26
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=38.21 E-value=96 Score=24.77 Aligned_cols=35 Identities=26% Similarity=0.444 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 007195 569 RVDALEAELIATKKALHEALMRQEDLLAYIDRQEE 603 (613)
Q Consensus 569 RvdalE~eL~~TKKaL~~al~kQ~El~ayie~~k~ 603 (613)
||+.||.+|-+-+-.+...=.-.++|-+.||+.++
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~e 35 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEE 35 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555554444433333333445555555443
No 27
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=37.00 E-value=1.8e+02 Score=31.09 Aligned_cols=75 Identities=31% Similarity=0.336 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 007195 530 LLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEA 604 (613)
Q Consensus 530 ~~~~~~kRl~eLEekv~~L~~KP~~mP~EKEe~L~aa~~RvdalE~eL~~TKKaL~~al~kQ~El~ayie~~k~~ 604 (613)
.+-.+..|.+.|++++..|...+.++=..--+-|+++=.++.+++.++.+-|+-|.+.=.+=.++-+-|+..+..
T Consensus 178 ~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~ 252 (325)
T PF08317_consen 178 LLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQ 252 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666778888888988888887765222244566666777777777666666555544444455555444433
No 28
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=34.92 E-value=3e+02 Score=29.34 Aligned_cols=65 Identities=32% Similarity=0.385 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 007195 531 LSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEA 604 (613)
Q Consensus 531 ~~~~~kRl~eLEekv~~L~~KP~~mP~EKEe~L~aa~~RvdalE~eL~~TKKaL~~al~kQ~El~ayie~~k~~ 604 (613)
+.+.=+.+.+||.+..+. ..|+++|.=| |.+|.-|+.+|...+|+|....--| ||.|-|+..+.+
T Consensus 109 ~~~ler~i~~Le~~~~T~-----~L~~e~E~~l---vq~I~~L~k~le~~~k~~e~~~~~~-el~aei~~lk~~ 173 (294)
T COG1340 109 IKSLEREIERLEKKQQTS-----VLTPEEEREL---VQKIKELRKELEDAKKALEENEKLK-ELKAEIDELKKK 173 (294)
T ss_pred HHHHHHHHHHHHHHHHhc-----CCChHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 467778899999998874 4688888766 6677779999999999999988775 556666665543
No 29
>PRK09039 hypothetical protein; Validated
Probab=34.77 E-value=3.1e+02 Score=29.76 Aligned_cols=29 Identities=14% Similarity=0.205 Sum_probs=17.7
Q ss_pred cchhhHHHHH--HHHHHHHHHHHHHhhhhhh
Q 007195 460 EGIRARIWAA--VMAFFMMFVTLFRSVAYRV 488 (613)
Q Consensus 460 ~~~~~~~~~~--~~~~~m~~~~~~~~~~~~~ 488 (613)
.|+..-+.+. |+.||+.||.+.-+|...-
T Consensus 17 pg~vd~~~~ll~~~~f~l~~f~~~q~fLs~~ 47 (343)
T PRK09039 17 PGFVDALSTLLLVIMFLLTVFVVAQFFLSRE 47 (343)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555444444 4457778888777776554
No 30
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=34.69 E-value=1.5e+02 Score=28.03 Aligned_cols=69 Identities=26% Similarity=0.285 Sum_probs=47.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCC---ChhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 007195 528 VDLLSSVTKRLSELEEKVDTLQAKPSEM---PYEKEELLH---AAVCRVDALEAELIATKKALHEALMRQEDLLA 596 (613)
Q Consensus 528 ~~~~~~~~kRl~eLEekv~~L~~KP~~m---P~EKEe~L~---aa~~RvdalE~eL~~TKKaL~~al~kQ~El~a 596 (613)
..++.++-+|++.||..|+.+..+=.+. ..+.+.... +.-+||.-||.||..+-+.|-+|..|=.+.-.
T Consensus 34 E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~ 108 (143)
T PF12718_consen 34 EQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADV 108 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888888888888888776653322 223333221 35578999999999999999999877655433
No 31
>PF13080 DUF3926: Protein of unknown function (DUF3926)
Probab=33.16 E-value=37 Score=25.42 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Q 007195 578 IATKKALHEALMRQEDLLAYIDRQE 602 (613)
Q Consensus 578 ~~TKKaL~~al~kQ~El~ayie~~k 602 (613)
+.+|++|+ +-||||.+|...++
T Consensus 13 QsAkqmln---ILQEELssy~~E~~ 34 (44)
T PF13080_consen 13 QSAKQMLN---ILQEELSSYPQEQP 34 (44)
T ss_pred HHHHHHHH---HHHHHHHhchhhcc
Confidence 46788886 67999999997765
No 32
>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=33.15 E-value=2e+02 Score=28.34 Aligned_cols=62 Identities=18% Similarity=0.279 Sum_probs=53.5
Q ss_pred HHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHh
Q 007195 543 EKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHE---ALMRQEDLLAYIDRQEEA 604 (613)
Q Consensus 543 ekv~~L~~KP~~mP~EKEe~L~aa~~RvdalE~eL~~TKKaL~~---al~kQ~El~ayie~~k~~ 604 (613)
|-|+...+||.--+.++..++++...--+-+|.-|.++++.|.+ .+.+=.||+.++.+++.+
T Consensus 22 edV~s~~~qp~~~~~~~l~~~~E~~~kYkfme~~l~a~~~~l~~kIPd~entLeiv~~l~~~~~~ 86 (187)
T KOG3313|consen 22 EDVESYISQPELESLEALKKLQERYGKYKFMEASLLAQKRRLKTKIPDIENTLEIVQTLIAKKDE 86 (187)
T ss_pred HHHHHHHcCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhCccc
Confidence 45778889999999999999999999999999999999999987 456777888888776543
No 33
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=33.14 E-value=2.3e+02 Score=32.55 Aligned_cols=54 Identities=28% Similarity=0.386 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHhHHHH
Q 007195 530 LLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKK--------------ALHEALMRQEDL 594 (613)
Q Consensus 530 ~~~~~~kRl~eLEekv~~L~~KP~~mP~EKEe~L~aa~~RvdalE~eL~~TKK--------------aL~~al~kQ~El 594 (613)
+...+.+||...|+.-.. .++=|+.+-.+|..||.||..|++ .|.+.|.+|.|=
T Consensus 442 Ec~aL~~rL~~aE~ek~~-----------l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~ee 509 (518)
T PF10212_consen 442 ECRALQKRLESAEKEKES-----------LEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQREE 509 (518)
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666654443 345589999999999999999998 455666666653
No 34
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=32.88 E-value=1.7e+02 Score=35.05 Aligned_cols=64 Identities=19% Similarity=0.319 Sum_probs=44.0
Q ss_pred HHHHHHHHHhcCCCCCCChh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHH
Q 007195 539 SELEEKVDTLQAKPSEMPYE---KEELLHAAVCRVDALEAELIATKKALHEALMR-QEDLLAYIDRQE 602 (613)
Q Consensus 539 ~eLEekv~~L~~KP~~mP~E---KEe~L~aa~~RvdalE~eL~~TKKaL~~al~k-Q~El~ayie~~k 602 (613)
.++++-+..++-..-.+|.. -++++++--.|++.++++++.|++.|.+.+.+ .++|.++-+..+
T Consensus 204 ~kv~~il~~~~f~~~~~p~~~~~p~e~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~ 271 (759)
T PF01496_consen 204 EKVKKILRSFGFERYDLPEDEGTPEEAIKELEEEIEELEKELEELEEELKKLLEKYAEELEAWYEYLR 271 (759)
T ss_dssp HHHHHHHHTTT--B----GGGGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCceecCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788888888778764 36899999999999999999999999987765 345555554444
No 35
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=31.70 E-value=2.9e+02 Score=32.97 Aligned_cols=75 Identities=24% Similarity=0.241 Sum_probs=45.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007195 527 EVDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKEEL----LHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQ 601 (613)
Q Consensus 527 ~~~~~~~~~kRl~eLEekv~~L~~KP~~mP~EKEe~----L~aa~~RvdalE~eL~~TKKaL~~al~kQ~El~ayie~~ 601 (613)
+.+...+=++|.-.+|++=.+=+-.=+.--.|-+++ +++|+.++..|++||+.+||-|.++.---+-|...+|++
T Consensus 171 ~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~L 249 (916)
T KOG0249|consen 171 QLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDL 249 (916)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 344556666666666654333221111111133322 579999999999999999999988765545555555443
No 36
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=31.51 E-value=2.9e+02 Score=30.87 Aligned_cols=90 Identities=17% Similarity=0.286 Sum_probs=64.6
Q ss_pred CCCCCcEEEEecCCCCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCCeEEEEeCCCCCCCCcch-----
Q 007195 168 DKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSK----- 242 (613)
Q Consensus 168 Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pacs~~~~~~v~~~tiIiD~~G~sl~~~~~----- 242 (613)
|....|++++-+|.-.- +.+.|+++++....+ ..--++|++-.|++-..+..
T Consensus 121 ~~~~~P~vvilpGltg~-------S~~~YVr~lv~~a~~----------------~G~r~VVfN~RG~~g~~LtTpr~f~ 177 (409)
T KOG1838|consen 121 DDGTDPIVVILPGLTGG-------SHESYVRHLVHEAQR----------------KGYRVVVFNHRGLGGSKLTTPRLFT 177 (409)
T ss_pred CCCCCcEEEEecCCCCC-------ChhHHHHHHHHHHHh----------------CCcEEEEECCCCCCCCccCCCceee
Confidence 34566999999987543 567899988754322 11356888988865444321
Q ss_pred -hHHHHHHHHHHHhccccccccceEEEEecChHHHHHHHHH
Q 007195 243 -NARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTV 282 (613)
Q Consensus 243 -~~~~lik~i~~ilq~~YPErL~ri~IINaP~~f~~lw~iV 282 (613)
---+-++.+++.+...||.+ +++.+..+.+-.++||-+
T Consensus 178 ag~t~Dl~~~v~~i~~~~P~a--~l~avG~S~Gg~iL~nYL 216 (409)
T KOG1838|consen 178 AGWTEDLREVVNHIKKRYPQA--PLFAVGFSMGGNILTNYL 216 (409)
T ss_pred cCCHHHHHHHHHHHHHhCCCC--ceEEEEecchHHHHHHHh
Confidence 12466788889999999998 899999999999888843
No 37
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=30.92 E-value=1.2e+02 Score=25.98 Aligned_cols=33 Identities=39% Similarity=0.462 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 007195 571 DALEAELIATKKALHEALMRQEDLLAYIDRQEE 603 (613)
Q Consensus 571 dalE~eL~~TKKaL~~al~kQ~El~ayie~~k~ 603 (613)
..|+-.|...+..|.++...|.+|.+.|++...
T Consensus 10 ~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~ 42 (92)
T PF14712_consen 10 SLLEPDLDRLDQQLQELRQSQEELLQQIDRLNE 42 (92)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777777777777777777777776553
No 38
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=30.90 E-value=3.2e+02 Score=28.69 Aligned_cols=40 Identities=20% Similarity=0.186 Sum_probs=33.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHH
Q 007195 527 EVDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAA 566 (613)
Q Consensus 527 ~~~~~~~~~kRl~eLEekv~~L~~KP~~mP~EKEe~L~aa 566 (613)
+...++-.|-|+..|+..++..+.+-+++.+.++++|-+.
T Consensus 50 s~~ql~ll~~~~k~L~aE~~qwqk~~peii~~n~~VL~~l 89 (268)
T PF11802_consen 50 SDAQLSLLMMRVKCLTAELEQWQKRTPEIIPLNPEVLLTL 89 (268)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhcCCCcCCCCHHHHHHH
Confidence 3446778889999999999999999999999988887643
No 39
>PHA00687 hypothetical protein
Probab=30.21 E-value=1.1e+02 Score=23.30 Aligned_cols=30 Identities=33% Similarity=0.471 Sum_probs=21.6
Q ss_pred CCCChhHHHHHHHH----------HHHHHHHHHHHHHHHH
Q 007195 553 SEMPYEKEELLHAA----------VCRVDALEAELIATKK 582 (613)
Q Consensus 553 ~~mP~EKEe~L~aa----------~~RvdalE~eL~~TKK 582 (613)
...|+|--.+|+.| +.||++||.--+..|+
T Consensus 9 ttlppeamrllqqaaqtpitradplarvkaiekatervkr 48 (56)
T PHA00687 9 TTLPPEAMRLLQQAAQTPITRADPLARVKAIEKATERVKR 48 (56)
T ss_pred ccCCHHHHHHHHHHhcCCccccChHHHHHHHHHHHHHHHH
Confidence 35788888888766 5788888876555553
No 40
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=30.02 E-value=3.6e+02 Score=27.86 Aligned_cols=54 Identities=13% Similarity=0.080 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007195 535 TKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMR 590 (613)
Q Consensus 535 ~kRl~eLEekv~~L~~KP~~mP~EKEe~L~aa~~RvdalE~eL~~TKKaL~~al~k 590 (613)
=..++-+|..+..-+. ..+=+..-||||.|..||..-|++-......-......
T Consensus 97 Ke~v~laEq~l~~~~~--~~~D~~wqEmLn~A~~kVneAE~ek~~ae~eH~~~~~~ 150 (239)
T PF05276_consen 97 KEMVALAEQSLMSDSN--WTFDPAWQEMLNHATQKVNEAEQEKTRAEREHQRRARI 150 (239)
T ss_pred HHHHHHHHHHHhcCCc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888776544 56889999999999999999888887777665544333
No 41
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=29.31 E-value=1.9e+02 Score=28.37 Aligned_cols=114 Identities=19% Similarity=0.293 Sum_probs=68.4
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCcccchhhcccccccccCCCCCCCCcchhhhHH-HHH
Q 007195 457 KTPEGIRARIWAAVMAFFMMFVTLFRSVAYRVTHRIPETSTGHDLNISEVAVDANEKEEFRPPSPSPSLTEVDLLS-SVT 535 (613)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 535 (613)
++.+.+..++-...+-++.++..++..+...+ +.+..-... .+ +..-+.+..+.+. .+-
T Consensus 46 ka~dsiK~y~~~vh~pll~~~~~~~~~~~~~l-~~~~~~~~~---------vd----------~~~~a~i~e~~L~~el~ 105 (204)
T PF04740_consen 46 KAYDSIKNYFSEVHIPLLQGLILLLEEYQEAL-KFIKDFQSE---------VD----------SSSNAIIDEDFLESELK 105 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHH---------Hc----------ccccccccHHHHHHHHH
Confidence 34456667777778888888888887766665 333220000 01 0011457777777 667
Q ss_pred HHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007195 536 KRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMR 590 (613)
Q Consensus 536 kRl~eLEekv~~L~~KP~~mP~EKEe~L~aa~~RvdalE~eL~~TKKaL~~al~k 590 (613)
+.|.++++.+..+...-..+-.+=.+++.-..-..+.+...+...|+-|.+++.|
T Consensus 106 ~~l~~~~~~~~~~~~~~~~~~~~vsdiv~~~~~~~~~~~~~~~~~~~~l~~~lek 160 (204)
T PF04740_consen 106 KKLNQLKEQIEDLQDEINSILSSVSDIVSLPKPSSSSFIDSLEKAKKKLQETLEK 160 (204)
T ss_pred HHHHHHHHHHHHHHHHHhhhccchHHHHhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888887766554444444553333333456666666777777766665
No 42
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A.
Probab=27.26 E-value=2.1e+02 Score=29.62 Aligned_cols=40 Identities=18% Similarity=0.191 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHH
Q 007195 563 LHAAVCRVDALEAELIATK-------KALHEALMRQEDLLAYIDRQE 602 (613)
Q Consensus 563 L~aa~~RvdalE~eL~~TK-------KaL~~al~kQ~El~ayie~~k 602 (613)
+.+.+.|+..||..|..-. ..+++...+..+|.+-|+..|
T Consensus 216 ~~e~~~k~~~Le~rl~~~~~~~~~~~~~~~~~~~~k~~l~~~i~~Lk 262 (268)
T PF13234_consen 216 FVELVKKIEALEKRLSSHPLHKCPDFEEHYALYHEKAELQEEIKALK 262 (268)
T ss_dssp HHHHHHHHHHHHHHHHHSCHCCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555544433 344445555555555554444
No 43
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=26.59 E-value=2e+02 Score=31.49 Aligned_cols=68 Identities=13% Similarity=0.033 Sum_probs=42.7
Q ss_pred ccCcccccCCCCCCcEEEEecCCCCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCCeEEEEeCCCCCC
Q 007195 159 YYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGL 237 (613)
Q Consensus 159 ~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pacs~~~~~~v~~~tiIiD~~G~sl 237 (613)
..||.+.|.|++|++.++...|+-|..-+++-.....|-...+......+. +... .-.++|||++-+-
T Consensus 204 ~~pH~Fl~i~~~G~~aiv~T~GN~~~HvILRGg~~PNY~~~~v~~a~~~l~----------~~~l-~~~vmVDcSH~NS 271 (356)
T PRK12822 204 RSPHLVTVPGLTGCISTLLSDGNPHGHIILRGGREPNYGLSDVTKASKLLH----------DEGL-NHRLIIDCSHGNS 271 (356)
T ss_pred cCCCeEEecCCCCcEEEEEcCCCCCceEEEeCCCCCCCCHHHHHHHHHHHH----------HCCC-CCcEEEECCCccC
Confidence 468888999999999999999988877666533323332223322222222 1122 2458999988754
No 44
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=26.56 E-value=3e+02 Score=30.84 Aligned_cols=55 Identities=27% Similarity=0.393 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHHHHHHhcC--CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007195 530 LLSSVTKRLSELEEKVDTLQA--KPSEMPYEKEELLHAAVCRVDALEAELIATKKAL 584 (613)
Q Consensus 530 ~~~~~~kRl~eLEekv~~L~~--KP~~mP~EKEe~L~aa~~RvdalE~eL~~TKKaL 584 (613)
++..+-++|.+|+..+..|.. +...+|+++.++++........|.++|.+.+.-|
T Consensus 342 ~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~ 398 (451)
T PF03961_consen 342 ELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEEL 398 (451)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777765 4567889999988888777777777666555444
No 45
>PHA02562 46 endonuclease subunit; Provisional
Probab=25.95 E-value=1.8e+02 Score=33.06 Aligned_cols=75 Identities=16% Similarity=0.280 Sum_probs=55.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 007195 528 VDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEE 603 (613)
Q Consensus 528 ~~~~~~~~kRl~eLEekv~~L~~KP~~mP~EKEe~L~aa~~RvdalE~eL~~TKKaL~~al~kQ~El~ayie~~k~ 603 (613)
.+.++.+...+.+|++++..|..+=.+.=...++ ++..-.|+..++.++...+..|++...+..+|-+=|++.+.
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~-~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~ 372 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDE-FNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQA 372 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567777888888888888887775544444444 77788999999999999999988877776666666665543
No 46
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=25.91 E-value=1.9e+02 Score=28.29 Aligned_cols=62 Identities=31% Similarity=0.418 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 007195 530 LLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELL----HAAVCRVDALEAELIATKKALHEALMRQE 592 (613)
Q Consensus 530 ~~~~~~kRl~eLEekv~~L~~KP~~mP~EKEe~L----~aa~~RvdalE~eL~~TKKaL~~al~kQ~ 592 (613)
.+.+++++|..+|+++..+..+...--..+++.+ ...-.-|+.|+.||.++++-+ ++|-+|-
T Consensus 119 r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~-~~LkkQ~ 184 (192)
T PF05529_consen 119 RVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEI-EALKKQS 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 4668889999999999998887655544444332 222233444555555432222 2444443
No 47
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=25.13 E-value=2.1e+02 Score=28.27 Aligned_cols=13 Identities=31% Similarity=0.516 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHhH
Q 007195 579 ATKKALHEALMRQ 591 (613)
Q Consensus 579 ~TKKaL~~al~kQ 591 (613)
+|.--|.+|.-||
T Consensus 142 ~~~~~~~~~~~~~ 154 (189)
T TIGR02132 142 KTQDELKETIQKQ 154 (189)
T ss_pred cchhHHHHHHHHH
Confidence 4555555555443
No 48
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=24.47 E-value=95 Score=30.31 Aligned_cols=32 Identities=38% Similarity=0.417 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007195 558 EKEELLHAAVCRVDALEAELIATKKALHEALMR 590 (613)
Q Consensus 558 EKEe~L~aa~~RvdalE~eL~~TKKaL~~al~k 590 (613)
|=|..||.|+.|-=-||.||+. |-.|.+.+-|
T Consensus 4 D~EsklN~AIERnalLE~ELdE-KE~L~~~~QR 35 (166)
T PF04880_consen 4 DFESKLNQAIERNALLESELDE-KENLREEVQR 35 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHCH--
T ss_pred HHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHH
Confidence 4578899999999999999977 8888877765
No 49
>PF15294 Leu_zip: Leucine zipper
Probab=24.36 E-value=2e+02 Score=30.46 Aligned_cols=61 Identities=36% Similarity=0.468 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 007195 536 KRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEAKFR 607 (613)
Q Consensus 536 kRl~eLEekv~~L~~KP~~mP~EKEe~L~aa~~RvdalE~eL~~TKKaL~~al~kQ~El~ayie~~k~~k~~ 607 (613)
+-+.+||.+|..|. .|=|.-+++.-.--++||.+|..| +|+-|..|++ ++..++-=++||+
T Consensus 190 q~l~dLE~k~a~lK-------~e~ek~~~d~~~~~k~L~e~L~~~---KhelL~~Qeq-L~~aekeLekKfq 250 (278)
T PF15294_consen 190 QDLSDLENKMAALK-------SELEKALQDKESQQKALEETLQSC---KHELLRVQEQ-LSLAEKELEKKFQ 250 (278)
T ss_pred cchhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhcchh-hhcchhhHHHHhC
Confidence 55778899998884 344556777777889999999998 5677888888 6666665566665
No 50
>PRK14137 recX recombination regulator RecX; Provisional
Probab=24.01 E-value=1.7e+02 Score=29.28 Aligned_cols=26 Identities=19% Similarity=0.084 Sum_probs=21.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHH
Q 007195 109 HMMLRFLKARKFDIDKAKHMWAEMLQ 134 (613)
Q Consensus 109 ~~LLRFLrArkfDvekA~~~l~~~l~ 134 (613)
.-+.+||..++|+.+.+...|.+.+.
T Consensus 156 ~K~~~~L~rRGFs~~~I~~al~~~~~ 181 (195)
T PRK14137 156 ASAYAFLARRGFSGAVIWPAIREVAA 181 (195)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 46899999999999998888887543
No 51
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=23.98 E-value=2.4e+02 Score=29.39 Aligned_cols=21 Identities=14% Similarity=0.052 Sum_probs=16.8
Q ss_pred HHHhHHHHHHHHHHHHHhhhh
Q 007195 587 ALMRQEDLLAYIDRQEEAKFR 607 (613)
Q Consensus 587 al~kQ~El~ayie~~k~~k~~ 607 (613)
+=.-|+-+.+++||.++||-+
T Consensus 250 s~d~~egi~aflek~~~~~~~ 270 (278)
T PLN03214 250 EPSIIKALGGVMERLSSGKEK 270 (278)
T ss_pred CHHHHHHHHHHHHHHhhcccc
Confidence 335588899999999988854
No 52
>PRK14136 recX recombination regulator RecX; Provisional
Probab=23.83 E-value=96 Score=33.18 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=19.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHH
Q 007195 108 YHMMLRFLKARKFDIDKAKHMWAE 131 (613)
Q Consensus 108 ~~~LLRFLrArkfDvekA~~~l~~ 131 (613)
..-+.|||..++|+.+...+.|..
T Consensus 278 k~K~iRfL~rRGFS~D~I~~vLk~ 301 (309)
T PRK14136 278 RAKQARFLAARGFSSATIVKLLKV 301 (309)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHh
Confidence 357799999999999988777753
No 53
>PRK12756 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=23.76 E-value=2.3e+02 Score=30.89 Aligned_cols=68 Identities=12% Similarity=0.127 Sum_probs=44.0
Q ss_pred ccCcccccCCCCCCcEEEEecCCCCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCCeEEEEeCCCCCC
Q 007195 159 YYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGL 237 (613)
Q Consensus 159 ~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pacs~~~~~~v~~~tiIiD~~G~sl 237 (613)
..||.+.|.|++|++.++...|+-|..-+++-.....|-...+......+. +.... -.++|||+.-+-
T Consensus 203 ~~~H~Fl~~~~~G~~aiv~T~GN~~~HvILRGg~~PNY~~~~v~~a~~~l~----------~~~l~-~~imVDcSH~NS 270 (348)
T PRK12756 203 RASHMFLSPDKDGQMTIYQTSGNPYGHIIMRGGKKPNYHAEDIAAACDTLR----------EFDLP-EHLVVDFSHGNC 270 (348)
T ss_pred hCCCeeEeeCCCCcEEEEEcCCCCCeEEEeeCCCCCCCCHHHHHHHHHHHH----------HCCCC-CcEEEECCCccc
Confidence 468888999999999999999998887666643333333333333333222 12222 458999988754
No 54
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=23.68 E-value=2.6e+02 Score=26.23 Aligned_cols=62 Identities=18% Similarity=0.303 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 007195 532 SSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDL 594 (613)
Q Consensus 532 ~~~~kRl~eLEekv~~L~~KP~~mP~EKEe~L~aa~~RvdalE~eL~~TKKaL~~al~kQ~El 594 (613)
....+|+.+.|..+..|...-.+ =..+=.-..+.+.+|+.|-..|.++...|++++.-=+.|
T Consensus 52 ~~L~~riKevd~~~~~l~~~~~e-rqk~~~k~ae~L~kv~els~~L~~~~~lL~~~v~~ie~L 113 (131)
T PF10158_consen 52 NALAKRIKEVDQEIAKLLQQMVE-RQKRFAKFAEQLEKVNELSQQLSRCQSLLNQTVPSIETL 113 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67789999999999888765331 134445567889999999999999999999987543333
No 55
>PRK10884 SH3 domain-containing protein; Provisional
Probab=23.65 E-value=5.5e+02 Score=25.84 Aligned_cols=72 Identities=19% Similarity=0.242 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCCC-------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 007195 534 VTKRLSELEEKVDTLQAKPSEM-------PYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEAK 605 (613)
Q Consensus 534 ~~kRl~eLEekv~~L~~KP~~m-------P~EKEe~L~aa~~RvdalE~eL~~TKKaL~~al~kQ~El~ayie~~k~~k 605 (613)
+-.||.+||..+..|..+-.++ =.|..+-|.++=.-|..|+.|...-++-|..+-.+=++|-+-++.+++..
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554443333 22334444455555666777777666666666555556666666666544
No 56
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=22.93 E-value=4.1e+02 Score=27.46 Aligned_cols=74 Identities=24% Similarity=0.311 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHhc---------CCC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 007195 531 LSSVTKRLSELEEKVDTLQ---------AKP-SEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDR 600 (613)
Q Consensus 531 ~~~~~kRl~eLEekv~~L~---------~KP-~~mP~EKEe~L~aa~~RvdalE~eL~~TKKaL~~al~kQ~El~ayie~ 600 (613)
...++.+...+|.+|..|. +|| -+|=..=+++|++.-.||..||+++..+|.-=.+||-.=++|.+-|=.
T Consensus 144 H~~~~~~~~~ae~~v~~Lek~lkr~I~KSrPYfe~K~~~~~~l~~~k~~v~~Le~~v~~aK~~Y~~ALrnLE~ISeeIH~ 223 (239)
T PF05276_consen 144 HQRRARIYNEAEQRVQQLEKKLKRAIKKSRPYFELKAKFNQQLEEQKEKVEELEAKVKQAKSRYSEALRNLEQISEEIHE 223 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666665 333 134455688999999999999999999999999999999999999866
Q ss_pred HHHh
Q 007195 601 QEEA 604 (613)
Q Consensus 601 ~k~~ 604 (613)
+...
T Consensus 224 ~R~~ 227 (239)
T PF05276_consen 224 QRRR 227 (239)
T ss_pred HHhh
Confidence 5544
No 57
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=22.67 E-value=1.4e+02 Score=29.76 Aligned_cols=31 Identities=45% Similarity=0.447 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Q 007195 557 YEKEELLHAAVCRVDALEAE-------LIATKKALHEA 587 (613)
Q Consensus 557 ~EKEe~L~aa~~RvdalE~e-------L~~TKKaL~~a 587 (613)
.||-+||.+|=.||+.|... |++||++-+-+
T Consensus 140 ~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~aA~kA 177 (188)
T PF05335_consen 140 AEKTQLLEAAKRRVEELQRQLQAARADYEKTKKAAYKA 177 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999864 56666665544
No 58
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=22.32 E-value=4.4e+02 Score=28.29 Aligned_cols=74 Identities=20% Similarity=0.252 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHhHHHHH
Q 007195 530 LLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDA--------------LEAELIATKKALHEALMRQEDLL 595 (613)
Q Consensus 530 ~~~~~~kRl~eLEekv~~L~~KP~~mP~EKEe~L~aa~~Rvda--------------lE~eL~~TKKaL~~al~kQ~El~ 595 (613)
.+-.+.+|.+.|+.++..|..-+.+|=.=.-+.|+.+=..+.. ++.+|..-+..+.+.-.+..|+.
T Consensus 173 ~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~ 252 (312)
T smart00787 173 IKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELN 252 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788999999999999988887722112233333344444 44555555555555555555555
Q ss_pred HHHHHHHH
Q 007195 596 AYIDRQEE 603 (613)
Q Consensus 596 ayie~~k~ 603 (613)
+-|-..++
T Consensus 253 ~~I~~ae~ 260 (312)
T smart00787 253 TEIAEAEK 260 (312)
T ss_pred HHHHHHHH
Confidence 55544443
No 59
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=22.13 E-value=5.1e+02 Score=28.33 Aligned_cols=67 Identities=18% Similarity=0.325 Sum_probs=42.7
Q ss_pred ccCcccccCCCCCCcEEEEecCCCCcchhhhcc-cHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCCeEEEEeCCCCC
Q 007195 159 YYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVT-TMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVG 236 (613)
Q Consensus 159 ~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~-t~~~~ir~~v~~~E~~l~~~~pacs~~~~~~v~~~tiIiD~~G~s 236 (613)
..||.|.|.|++|++.++..-|+-|..-.++-. +...|-+..+......+. +... ..-+|||++..+
T Consensus 204 ~~~H~fl~~~~~G~~~~i~t~GN~~~hlilRGg~~~pNy~~~~i~~~~~~l~----------k~~l-~~~v~VD~SH~n 271 (349)
T PRK09261 204 SAPHHFLGITKDGRSAIVSTTGNPDCHVILRGGNKGPNYDAESVAEAKERLE----------KAGL-PPRIMIDCSHAN 271 (349)
T ss_pred hCCceeeecCCCCcEEEEECCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHH----------HcCC-CCCEEEECCCcc
Confidence 357788899999999999999988776554432 334444444433333222 1112 467899998855
No 60
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=22.01 E-value=1.1e+02 Score=27.50 Aligned_cols=96 Identities=21% Similarity=0.314 Sum_probs=50.3
Q ss_pred CCCChhHh--hhhccchhhHhhhccchhhhhhhcccCCCCCCCccccccccCCCCHHHHHHHHHHHHHHHhCCCCCCCCC
Q 007195 29 FENSEDER--RTRIGSLKKKALNASTKFKHSLKKKSSRRKSDGRVSSVSIEDVRDVEELQAVDAFRQSLIMDELLPERHD 106 (613)
Q Consensus 29 ~~~~~~~~--~~~~~~~~~~~~~~s~~~~~s~~k~~~~r~~~~~v~s~~ied~~d~~E~~al~efR~~L~~~~~Lp~~~d 106 (613)
..+-.|++ +.-+.+.....-....+++.-|++|| .+..+..-.+++. +++..+....+..+... .-+....
T Consensus 21 ~gyidD~~ya~~~v~~~~~~~~~G~~~I~~~L~~kG----i~~~~i~~~l~~~--~~~e~a~~~~~kk~~~~-~~~~~~~ 93 (121)
T PF02631_consen 21 LGYIDDERYAESYVRSRLRRKGKGPRRIRQKLKQKG----IDREIIEEALEEY--DEEEEALELAEKKYRRY-RKPSDRK 93 (121)
T ss_dssp TTSS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHTT------HHHHHHHHTCS---HHHHHHHHHHHHHHHT-TTS-CHH
T ss_pred cCCCCHHHHHHHHHHHhcccccccHHHHHHHHHHHC----CChHHHHHHHHHh--hHHHHHHHHHHHHHhcc-cCCCCHH
Confidence 34556666 33444444323345667888999998 4433333333422 22334666666666543 1112233
Q ss_pred cHHHHHHHHHHcCCCHHHHHHHHHH
Q 007195 107 DYHMMLRFLKARKFDIDKAKHMWAE 131 (613)
Q Consensus 107 D~~~LLRFLrArkfDvekA~~~l~~ 131 (613)
...-+.+||..++|+.+.+...+.+
T Consensus 94 ~~~K~~~~L~rrGF~~~~i~~vi~~ 118 (121)
T PF02631_consen 94 RKQKLIRFLMRRGFSYDVIRRVISE 118 (121)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHCHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHhh
Confidence 3457899999999999988776654
No 61
>PF15027 DUF4525: Domain of unknown function (DUF4525)
Probab=22.00 E-value=85 Score=29.27 Aligned_cols=24 Identities=46% Similarity=0.560 Sum_probs=19.5
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhc
Q 007195 526 TEVDLLSSVTKRLSELEEKVDTLQ 549 (613)
Q Consensus 526 ~~~~~~~~~~kRl~eLEekv~~L~ 549 (613)
+-+-.+-.+|+||..||.||+.|-
T Consensus 83 tiAVLLddiLqRl~kLE~kvd~lv 106 (138)
T PF15027_consen 83 TIAVLLDDILQRLVKLESKVDNLV 106 (138)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHe
Confidence 344557889999999999999863
No 62
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=21.80 E-value=2.3e+02 Score=31.74 Aligned_cols=32 Identities=25% Similarity=0.451 Sum_probs=26.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007195 556 PYEKEELLHAAVCRVDALEAELIATKKALHEA 587 (613)
Q Consensus 556 P~EKEe~L~aa~~RvdalE~eL~~TKKaL~~a 587 (613)
|..++++|++=++-|+.||.||+..+--+..+
T Consensus 323 ~l~~~d~L~~f~~~v~~lE~el~~~~~e~k~~ 354 (590)
T COG5104 323 PLDRKDILFSFIRYVRRLEKELLSAIEERKAA 354 (590)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999998765444433
No 63
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=21.49 E-value=8.6e+02 Score=24.83 Aligned_cols=60 Identities=23% Similarity=0.252 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 007195 529 DLLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYI 598 (613)
Q Consensus 529 ~~~~~~~kRl~eLEekv~~L~~KP~~mP~EKEe~L~aa~~RvdalE~eL~~TKKaL~~al~kQ~El~ayi 598 (613)
..+..+..+.++||++...--.+-. |+|-+.++.|+..||..+...+ .++..|.+.++-+
T Consensus 59 ~~~~~~~~~~~k~e~~A~~Al~~g~------E~LAr~al~~~~~le~~~~~~~----~~~~~~~~~~~~l 118 (225)
T COG1842 59 RKLEEAQARAEKLEEKAELALQAGN------EDLAREALEEKQSLEDLAKALE----AELQQAEEQVEKL 118 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 3467778888888888876666644 9999999999998887665544 4444444444443
No 64
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=21.31 E-value=5.9e+02 Score=28.55 Aligned_cols=75 Identities=31% Similarity=0.379 Sum_probs=48.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCC---CCCCChhHHHHH---------HHH-HHHHHHHHHHHHHHHHHHHHH-HHhHHH
Q 007195 528 VDLLSSVTKRLSELEEKVDTLQAK---PSEMPYEKEELL---------HAA-VCRVDALEAELIATKKALHEA-LMRQED 593 (613)
Q Consensus 528 ~~~~~~~~kRl~eLEekv~~L~~K---P~~mP~EKEe~L---------~aa-~~RvdalE~eL~~TKKaL~~a-l~kQ~E 593 (613)
+..+..+||||+.||..-.-|+.| |..-|.---++- -+| -.-||-|-+|.+.-|+-|-.| +.-|++
T Consensus 200 EalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek 279 (552)
T KOG2129|consen 200 EALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEK 279 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346899999999999877777654 433333333332 112 234677777777777777654 566888
Q ss_pred HHHHHHHHH
Q 007195 594 LLAYIDRQE 602 (613)
Q Consensus 594 l~ayie~~k 602 (613)
++-|.+..+
T Consensus 280 ~~qy~~Ee~ 288 (552)
T KOG2129|consen 280 LMQYRAEEV 288 (552)
T ss_pred HHHHHHHHh
Confidence 888886544
No 65
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=21.25 E-value=4.8e+02 Score=24.43 Aligned_cols=50 Identities=20% Similarity=0.302 Sum_probs=39.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH----HhHHHHHHHHHHHHHhh
Q 007195 556 PYEKEELLHAAVCRVDALEAELI----ATKKALHEAL----MRQEDLLAYIDRQEEAK 605 (613)
Q Consensus 556 P~EKEe~L~aa~~RvdalE~eL~----~TKKaL~~al----~kQ~El~ayie~~k~~k 605 (613)
|.=||+|+..--..+..+|.||. -.||++.+.- .....|-++++..+...
T Consensus 15 e~~K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r 72 (131)
T PF11068_consen 15 EKWKEELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQER 72 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHH
Confidence 45689999999999999999986 4788888865 55567778888776544
No 66
>smart00353 HLH helix loop helix domain.
Probab=21.16 E-value=2.6e+02 Score=20.94 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=20.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHH
Q 007195 555 MPYEKEELLHAAVCRVDALEAELI 578 (613)
Q Consensus 555 mP~EKEe~L~aa~~RvdalE~eL~ 578 (613)
-..+|-.+|..|++=|+.|+.++.
T Consensus 29 ~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 29 KKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHh
Confidence 347899999999999999988764
No 67
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=21.14 E-value=9.9e+02 Score=25.24 Aligned_cols=44 Identities=23% Similarity=0.293 Sum_probs=30.1
Q ss_pred hCCCCCeEEEEeCCCCCCCCcchhHHHHHHHHHHHhccccccccc
Q 007195 220 KRHIDSSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLH 264 (613)
Q Consensus 220 ~~~v~~~tiIiD~~G~sl~~~~~~~~~lik~i~~ilq~~YPErL~ 264 (613)
...+...-+|+|- |+|+..-......+++.+-.+-.-.||-.++
T Consensus 174 ~~GI~~~~IilDP-GiGF~k~~~~n~~ll~~l~~l~~lg~Pilvg 217 (282)
T PRK11613 174 AAGIAKEKLLLDP-GFGFGKNLSHNYQLLARLAEFHHFNLPLLVG 217 (282)
T ss_pred HcCCChhhEEEeC-CCCcCCCHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 3456667899999 6887544345678888887766667775443
No 68
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=20.60 E-value=2.4e+02 Score=30.75 Aligned_cols=68 Identities=18% Similarity=0.261 Sum_probs=41.9
Q ss_pred ccCcccccCCCCCCcEEEEecCCCCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCCeEEEEeCCCCCC
Q 007195 159 YYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGL 237 (613)
Q Consensus 159 ~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pacs~~~~~~v~~~tiIiD~~G~sl 237 (613)
..||++.|.|++|++.++...|+-|..-.++-.....|-+..+......+. ..+.. -.+|||++..+-
T Consensus 199 ~~~H~fl~~~~~G~~~~i~t~GN~~~hlilRGg~~pNy~~~di~~~~~~l~----------~~~lp-~~vmVD~SH~ns 266 (344)
T TIGR00034 199 AAPHYFLSVTKDGQMAIVQTSGNPDGHIILRGGKKPNYSAADVAAAKKQLE----------KAGLP-PHLMIDFSHGNS 266 (344)
T ss_pred hCCceeeecCCCCcEEEEECCCCCCEEEEecCCCCCCCCHHHHHHHHHHHH----------HcCCC-CeEEEeCCCccc
Confidence 578899999999999999998887765544422223343333333332222 12222 458999988653
No 69
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=20.56 E-value=2.1e+02 Score=28.12 Aligned_cols=32 Identities=25% Similarity=0.350 Sum_probs=24.6
Q ss_pred CCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 007195 101 LPERHDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (613)
Q Consensus 101 Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~ 132 (613)
+|....+..-+.|||..++|..+.+...|...
T Consensus 133 ~~~~~~~k~Ki~r~L~~rGFs~~~i~~~l~~~ 164 (174)
T COG2137 133 KPPDKKEKAKIQRFLLRRGFSYEVIKEALNEA 164 (174)
T ss_pred cCcchhHHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 44444455789999999999999888777654
No 70
>PF14282 FlxA: FlxA-like protein
Probab=20.40 E-value=4e+02 Score=23.75 Aligned_cols=52 Identities=13% Similarity=0.369 Sum_probs=38.8
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhcCCCCCCCh-hHHHHHHHHHHHHHHHHHHHH
Q 007195 526 TEVDLLSSVTKRLSELEEKVDTLQAKPSEMPY-EKEELLHAAVCRVDALEAELI 578 (613)
Q Consensus 526 ~~~~~~~~~~kRl~eLEekv~~L~~KP~~mP~-EKEe~L~aa~~RvdalE~eL~ 578 (613)
.....+..+-+++.+|.+++..|...- .|++ +|.+....=-.-|..||+.|.
T Consensus 16 ~~~~~I~~L~~Qi~~Lq~ql~~l~~~~-~~~~e~k~~q~q~Lq~QI~~LqaQI~ 68 (106)
T PF14282_consen 16 SSDSQIEQLQKQIKQLQEQLQELSQDS-DLDAEQKQQQIQLLQAQIQQLQAQIA 68 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccc-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346689999999999999999999952 3454 566555555557778888775
No 71
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=20.32 E-value=4.3e+02 Score=22.42 Aligned_cols=43 Identities=19% Similarity=0.309 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 007195 562 LLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEA 604 (613)
Q Consensus 562 ~L~aa~~RvdalE~eL~~TKKaL~~al~kQ~El~ayie~~k~~ 604 (613)
.|++.=..++.++.++....+=..+.+.++.++++=++.+.++
T Consensus 27 ~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~ 69 (90)
T PF06103_consen 27 TLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEK 69 (90)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3666667777888888888888888888888888877766543
No 72
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=20.15 E-value=4.2e+02 Score=22.49 Aligned_cols=19 Identities=26% Similarity=0.513 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 007195 530 LLSSVTKRLSELEEKVDTL 548 (613)
Q Consensus 530 ~~~~~~kRl~eLEekv~~L 548 (613)
.+..+..+.+.||+.|++|
T Consensus 43 ~L~~L~~~a~rm~eRI~tL 61 (75)
T PF06667_consen 43 RLQELYEQAERMEERIETL 61 (75)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555566666666655555
No 73
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=20.12 E-value=1.2e+02 Score=24.53 Aligned_cols=13 Identities=31% Similarity=0.759 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHH
Q 007195 533 SVTKRLSELEEKV 545 (613)
Q Consensus 533 ~~~kRl~eLEekv 545 (613)
++=+||+.||..+
T Consensus 29 tiEqRLa~LE~rL 41 (60)
T PF11471_consen 29 TIEQRLAALEQRL 41 (60)
T ss_pred CHHHHHHHHHHHH
Confidence 4568888888653
Done!