Query 007195
Match_columns 613
No_of_seqs 347 out of 1572
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 19:35:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007195.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007195hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q8g_A CRAL-TRIO domain-contai 100.0 1.9E-55 6.4E-60 462.9 20.0 270 72-345 28-304 (320)
2 1aua_A Phosphatidylinositol tr 100.0 1.4E-54 4.9E-59 450.0 21.6 263 80-345 26-289 (296)
3 1olm_A SEC14-like protein 2; l 100.0 2.8E-46 9.7E-51 403.9 22.8 240 80-325 8-248 (403)
4 3hx3_A Retinaldehyde-binding p 100.0 1E-44 3.5E-49 380.5 18.7 235 75-325 47-295 (316)
5 1r5l_A Alpha-TTP, protein (alp 100.0 1.9E-44 6.5E-49 366.3 16.5 228 81-324 5-235 (262)
6 3pg7_A Neurofibromin; SEC lipi 99.1 8.1E-11 2.8E-15 119.7 5.5 135 158-314 9-144 (256)
7 3peg_A Neurofibromin; SEC14 do 98.8 1.5E-09 5.2E-14 112.1 4.1 130 163-314 33-163 (290)
8 2hy6_A General control protein 74.0 0.86 2.9E-05 31.2 0.6 16 536-551 1-16 (34)
9 2bni_A General control protein 73.5 0.9 3.1E-05 31.2 0.6 16 536-551 1-16 (34)
10 2oxj_A Hybrid alpha/beta pepti 71.1 4.8 0.00017 27.6 3.7 30 536-573 1-30 (34)
11 3c3f_A Alpha/beta peptide with 70.7 6.1 0.00021 27.0 4.1 15 536-550 1-15 (34)
12 3c3g_A Alpha/beta peptide with 70.2 1.3 4.4E-05 30.2 0.7 14 537-550 1-14 (33)
13 1uo4_A General control protein 69.9 4.7 0.00016 27.7 3.4 15 536-550 1-15 (34)
14 2wq1_A General control protein 69.7 6.7 0.00023 26.7 4.1 14 537-550 1-14 (33)
15 3a8y_C BAG family molecular ch 69.4 13 0.00045 33.8 7.4 69 527-602 32-109 (142)
16 1m7k_A Silencer of death domai 67.7 10 0.00035 32.5 6.1 68 526-600 21-97 (99)
17 3m48_A General control protein 66.4 5.7 0.00019 27.1 3.3 13 537-549 1-13 (33)
18 2dhy_A CUE domain-containing p 65.2 10 0.00035 30.2 5.2 48 77-132 11-58 (67)
19 1kd8_A GABH AIV, GCN4 acid bas 63.7 8.9 0.00031 26.6 3.9 14 536-549 1-14 (36)
20 1m62_A BAG-family molecular ch 63.6 22 0.00075 29.8 7.2 66 528-600 10-84 (87)
21 1nkp_A C-MYC, MYC proto-oncoge 60.9 39 0.0013 28.1 8.4 66 536-601 16-85 (88)
22 1wgl_A TOLL-interacting protei 59.4 11 0.00036 29.3 4.2 40 85-132 10-49 (59)
23 2dam_A ETEA protein; KIAA0887, 57.9 41 0.0014 26.5 7.6 44 79-130 13-56 (67)
24 1kd8_B GABH BLL, GCN4 acid bas 57.3 19 0.00066 24.9 4.6 16 536-551 1-16 (36)
25 1nkp_B MAX protein, MYC proto- 56.2 52 0.0018 26.7 8.3 63 536-598 12-77 (83)
26 2r2v_A GCN4 leucine zipper; co 53.0 20 0.00068 24.6 4.1 16 536-551 1-16 (34)
27 1yke_B RNA polymerase II holoe 45.6 1.3E+02 0.0046 27.4 10.1 69 526-602 50-126 (151)
28 2dal_A Protein KIAA0794; FAS a 44.4 48 0.0017 25.6 5.9 40 81-129 12-51 (62)
29 3htk_A Structural maintenance 44.0 1E+02 0.0034 23.2 7.7 46 559-604 10-55 (60)
30 1v92_A NSFL1 cofactor P47; 3-h 42.0 42 0.0014 23.9 4.9 37 84-129 5-41 (46)
31 1ugo_A BCL2-associated athanog 40.7 39 0.0013 28.9 5.2 66 529-601 18-92 (99)
32 2p2u_A HOST-nuclease inhibitor 40.0 2E+02 0.0067 26.7 10.5 68 524-604 11-78 (171)
33 3e3v_A Regulatory protein RECX 39.7 20 0.00069 33.5 3.6 78 50-132 85-163 (177)
34 1uk5_A BAG-family molecular ch 38.9 67 0.0023 28.0 6.5 68 528-602 29-105 (111)
35 1ic2_A Tropomyosin alpha chain 38.5 78 0.0027 25.7 6.6 58 532-593 16-73 (81)
36 1ykh_B RNA polymerase II holoe 37.0 2.2E+02 0.0076 25.2 12.0 67 527-601 51-125 (132)
37 3rrk_A V-type ATPase 116 kDa s 36.9 1.3E+02 0.0044 30.7 9.6 65 539-603 199-269 (357)
38 2q9q_C DNA replication complex 35.5 84 0.0029 29.8 7.3 26 554-579 20-45 (196)
39 2oqq_A Transcription factor HY 33.6 28 0.00096 25.0 2.6 15 535-549 16-30 (42)
40 3e21_A HFAF1, FAS-associated f 32.2 1E+02 0.0035 22.4 5.5 37 84-128 5-41 (45)
41 1ufz_A Hypothetical protein BA 31.1 79 0.0027 26.2 5.3 41 85-132 35-75 (83)
42 1otr_A Protein CUE2; protein-p 30.9 66 0.0022 23.9 4.4 25 108-132 20-44 (49)
43 2di0_A Activating signal coint 30.9 1.1E+02 0.0037 24.6 5.9 45 79-131 8-52 (71)
44 1z96_A DNA-damage, UBA-domain 30.6 74 0.0025 21.6 4.5 21 109-129 19-39 (40)
45 3etw_A Adhesin A; antiparallel 30.2 1.2E+02 0.004 26.8 6.6 74 532-605 5-108 (119)
46 3dfg_A Xcrecx, regulatory prot 28.2 36 0.0012 31.2 3.2 75 50-130 83-157 (162)
47 2ke4_A CDC42-interacting prote 28.0 73 0.0025 27.1 4.8 57 530-587 16-88 (98)
48 2dah_A Ubiquilin-3; UBA domain 27.3 1.4E+02 0.0046 22.4 5.7 38 86-132 11-48 (54)
49 3d5l_A Regulatory protein RECX 25.8 33 0.0011 33.2 2.6 72 50-129 128-203 (221)
50 3hf0_A GCN4-PLI SIDE chain seq 25.7 1.3E+02 0.0045 19.9 4.5 28 559-586 6-33 (34)
51 2ql2_B Neurod1, neurogenic dif 25.7 81 0.0028 24.2 4.3 43 536-578 12-58 (60)
52 1hlo_A Protein (transcription 25.5 86 0.0029 25.2 4.7 47 536-582 22-71 (80)
53 2z5i_I TM, tropomyosin alpha-1 24.5 51 0.0017 23.6 2.6 20 564-583 20-39 (40)
54 1wr1_B Ubiquitin-like protein 24.5 1.5E+02 0.0051 22.6 5.6 26 106-131 30-55 (58)
55 3u1c_A Tropomyosin alpha-1 cha 24.1 1.3E+02 0.0045 25.4 5.8 56 534-593 21-76 (101)
56 1vej_A Riken cDNA 4931431F19; 23.4 1.4E+02 0.0046 24.1 5.4 38 85-131 30-67 (74)
57 1pl5_A Regulatory protein SIR4 23.0 66 0.0022 27.8 3.5 40 568-607 95-134 (142)
58 2dna_A Unnamed protein product 22.8 1.7E+02 0.0058 23.1 5.7 38 85-131 20-57 (67)
59 4aya_A DNA-binding protein inh 22.4 1.1E+02 0.0039 25.9 4.9 45 535-579 34-82 (97)
60 2l5g_B Putative uncharacterize 22.3 1.4E+02 0.0048 21.5 4.6 35 558-596 3-37 (42)
61 1g8x_A Myosin II heavy chain f 21.4 3.2E+02 0.011 32.4 10.3 61 534-597 819-887 (1010)
62 3c1d_A Protein ORAA, regulator 21.3 16 0.00055 33.5 -0.6 74 50-129 81-154 (159)
63 1nyh_A Regulatory protein SIR4 20.9 77 0.0026 28.0 3.6 40 568-607 119-158 (166)
64 2lw1_A ABC transporter ATP-bin 20.8 3.2E+02 0.011 22.2 7.4 64 527-595 20-83 (89)
65 2dzl_A Protein FAM100B; UBA-li 20.5 1.8E+02 0.0062 22.6 5.5 35 86-129 19-53 (66)
66 1am9_A Srebp-1A, protein (ster 20.3 2.9E+02 0.0099 22.2 7.0 24 556-579 38-61 (82)
No 1
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=1.9e-55 Score=462.88 Aligned_cols=270 Identities=36% Similarity=0.643 Sum_probs=245.9
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCcccccchH
Q 007195 72 SSVSIEDVRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFK 151 (613)
Q Consensus 72 ~s~~ied~~d~~E~~al~efR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~l~WRke~~~d~i~~d~~~~ 151 (613)
+++-..++ +++|+++|++||+||.++++ +...|| .+||||||||+||+++|.+||+++++||+++++|.++.++.++
T Consensus 28 ~~g~~~~l-t~~q~~~l~~lR~~l~~~~~-~~~~dD-~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~~ 104 (320)
T 3q8g_A 28 LPGTPGNL-TKEQEEALLQFRSILLEKNY-KERLDD-STLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENN 104 (320)
T ss_dssp CTTSTTCC-CHHHHHHHHHHHHHHHHTTC-CSSCSH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHHT
T ss_pred CCCCCCCC-CHHHHHHHHHHHHHHHhcCC-CCCCCH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCccccccccccc
Confidence 34434444 78899999999999999884 566777 5999999999999999999999999999999999998776554
Q ss_pred ------HHHHHHhccCcccccCCCCCCcEEEEecCCCCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCC
Q 007195 152 ------EINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDS 225 (613)
Q Consensus 152 ------el~~vlk~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pacs~~~~~~v~~ 225 (613)
+...+.++++++++|+|++||||+|+++|++|++++++.++.+++++++++.+|.+++.++++|+...+..+++
T Consensus 105 ~~~~~~e~~~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~ 184 (320)
T 3q8g_A 105 KEAEDKERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIET 184 (320)
T ss_dssp HHHHHHHHHHHHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCC
T ss_pred cccchhHHHHHHHhCCceecCCCCCcCEEEEEeccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcce
Confidence 44567789999999999999999999999999999888889999999999999999988888888877888999
Q ss_pred eEEEEeCCCCCCCCcchhHHHHHHHHHHHhccccccccceEEEEecChHHHHHHHHHHhcCChhhhcceEEcCccchHHH
Q 007195 226 STSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKL 305 (613)
Q Consensus 226 ~tiIiD~~G~sl~~~~~~~~~lik~i~~ilq~~YPErL~ri~IINaP~~f~~lw~iVKpFLdpkTr~KI~~lg~~~~~~L 305 (613)
+++|+|++|+|+++++. ...+++.+++++|+|||+||+++||||+|++|+++|++|++||+++|++||+|+++++.+.|
T Consensus 185 ~~~IiD~~g~sl~~~~~-~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~~~~~~L 263 (320)
T 3q8g_A 185 SCTVLDLKGISLSNAYH-VLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKEL 263 (320)
T ss_dssp EEEEEECTTCCHHHHHH-THHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCTTHHHHH
T ss_pred eEEEEECCCCCHHHHHH-HHHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCCCcHHHH
Confidence 99999999999999864 37889999999999999999999999999999999999999999999999999998888899
Q ss_pred HcccCCCCCccccCCCCCCCC-CCCCccCCCCCCCCHHHHH
Q 007195 306 LEIIDARELPEFLGGTCNCAD-QGGCLRSDKGPWQNPEILK 345 (613)
Q Consensus 306 ~e~Id~e~LP~~yGGt~~~~~-~ggcl~~~~gpW~dp~~~k 345 (613)
.++||+++||++|||+++|.+ +|||+.+|.|||+||++++
T Consensus 264 ~~~i~~~~LP~~yGG~~~~~~~~ggc~~~~~gpw~~~~~~~ 304 (320)
T 3q8g_A 264 LKQIPIENLPVKYGGTSVLHNPNDKFYYSDIGPWRDPRYIG 304 (320)
T ss_dssp HHHSCGGGSBGGGTSCBCCSSTTSCGGGBCBSGGGCTTTCC
T ss_pred HhhCChhhCChhhCCCCCCCCCCCCeecCCCCCCCChhhcC
Confidence 999999999999999999976 6999999999999998865
No 2
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=1.4e-54 Score=450.00 Aligned_cols=263 Identities=37% Similarity=0.690 Sum_probs=241.8
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCcccccchHHHHHHHhc
Q 007195 80 RDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSY 159 (613)
Q Consensus 80 ~d~~E~~al~efR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~l~WRke~~~d~i~~d~~~~el~~vlk~ 159 (613)
.+++|+++|++||++|.+++ ++...|| .+||||||||+||+++|.+||.++++||++++++.+..++.+.+...+.++
T Consensus 26 l~~~q~~~l~~lr~~l~~~~-~~~~~dd-~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~~~~~~~~~ 103 (296)
T 1aua_A 26 LDSAQEKALAELRKLLEDAG-FIERLDD-STLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKPLIAKF 103 (296)
T ss_dssp CCTTHHHHHHHHHHHHHHTT-CCSSCSH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHCCCTTHHHHGGG
T ss_pred CCHHHHHHHHHHHHHHHhcC-CCCCCch-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcchhhhccccCcHHHHHHh
Confidence 36788999999999999887 4566777 599999999999999999999999999999999988776655444556788
Q ss_pred cCcccccCCCCCCcEEEEecCCCCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCCeEEEEeCCCCCCCC
Q 007195 160 YPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKN 239 (613)
Q Consensus 160 ~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pacs~~~~~~v~~~tiIiD~~G~sl~~ 239 (613)
++++++|+|++||||+|+++|++|++++++..+.+++++++++.+|.+++.++++|+...+.+++++++|+|++|+|++|
T Consensus 104 ~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~g~s~~~ 183 (296)
T 1aua_A 104 YPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISS 183 (296)
T ss_dssp SCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHH
T ss_pred CCceecccCCCCCEEEEEeeccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECCCCCHHH
Confidence 99999999999999999999999999988888999999999999999999888888887778899999999999999999
Q ss_pred cchhHHHHHHHHHHHhccccccccceEEEEecChHHHHHHHHHHhcCChhhhcceEEcCccchHHHHcccCCCCCccccC
Q 007195 240 FSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLG 319 (613)
Q Consensus 240 ~~~~~~~lik~i~~ilq~~YPErL~ri~IINaP~~f~~lw~iVKpFLdpkTr~KI~~lg~~~~~~L~e~Id~e~LP~~yG 319 (613)
++.. .++++.+++++|+||||||+++||||+|++|+++|++|++||+++|++||+|+++++.+.|.++||+++||++||
T Consensus 184 ~~~~-~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~~LP~~yG 262 (296)
T 1aua_A 184 AYSV-MSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLPVKFG 262 (296)
T ss_dssp HHHH-HHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCSCCHHHHTTTSCSSSSBGGGT
T ss_pred HHHH-HHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeCcccHHHHHhhCCHhhCcHHhC
Confidence 8753 789999999999999999999999999999999999999999999999999999888889999999999999999
Q ss_pred CCCCCCC-CCCCccCCCCCCCCHHHHH
Q 007195 320 GTCNCAD-QGGCLRSDKGPWQNPEILK 345 (613)
Q Consensus 320 Gt~~~~~-~ggcl~~~~gpW~dp~~~k 345 (613)
|+++|.. +|||+.++.|||++|++++
T Consensus 263 G~~~~~~~~~g~~~~~~~~w~~~~~~~ 289 (296)
T 1aua_A 263 GKSEVDESKGGLYLSDIGPWRDPKYIG 289 (296)
T ss_dssp SCBCCCGGGCCSTTCCCSGGGCGGGCC
T ss_pred CCCCCCCCCCCceeCCCCCCCChhhcc
Confidence 9999976 6899999999999998865
No 3
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=2.8e-46 Score=403.94 Aligned_cols=240 Identities=30% Similarity=0.468 Sum_probs=215.2
Q ss_pred CCHHHHHHHHHHHHHHHhCC-CCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCcccccchHHHHHHHh
Q 007195 80 RDVEELQAVDAFRQSLIMDE-LLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLS 158 (613)
Q Consensus 80 ~d~~E~~al~efR~~L~~~~-~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~l~WRke~~~d~i~~d~~~~el~~vlk 158 (613)
.+++|+++|++||++|.+.. .+| ..|| .+||||||||+||+++|.+||.++++||++++++.++.+ ..++ .+.+
T Consensus 8 l~~~q~~~l~~lr~~l~~~~~~l~-~~dD-~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~-~~~~--~~~~ 82 (403)
T 1olm_A 8 LSPRQKEALAKFRENVQDVLPALP-NPDD-YFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISW-QPPE--VIQQ 82 (403)
T ss_dssp CCHHHHHHHHHHHHHHGGGGGGSS-CCCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGGS-CCCH--HHHH
T ss_pred CCHHHHHHHHHHHHHHHhhccCCC-CCCh-hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCccccc-CCHH--HHHH
Confidence 37899999999999998873 455 4666 599999999999999999999999999999999888763 3333 2456
Q ss_pred ccCcccccCCCCCCcEEEEecCCCCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCCeEEEEeCCCCCCC
Q 007195 159 YYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLK 238 (613)
Q Consensus 159 ~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pacs~~~~~~v~~~tiIiD~~G~sl~ 238 (613)
+++++++|+|++||||+|+++|++|++++++..+.+++++++++.+|.++..+. .++...+.+++++++|+|++|++++
T Consensus 83 ~~~~~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~~-~~s~~~g~~v~~~~~I~D~~g~sl~ 161 (403)
T 1olm_A 83 YLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECA-HQTTKLGRKVETITIIYDCEGLGLK 161 (403)
T ss_dssp HCCBEEEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHH-HHHHHHTSCCCCEEEEEECTTCCGG
T ss_pred hCCceeeccCCCcCEEEEEecCCCChHHhhccCCHHHHHHHHHHHHHHHHHHHH-hhHHhhCCcccceEEEEECCCCCHH
Confidence 788889999999999999999999999988888999999999999999998643 3444445678999999999999999
Q ss_pred CcchhHHHHHHHHHHHhccccccccceEEEEecChHHHHHHHHHHhcCChhhhcceEEcCccchHHHHcccCCCCCcccc
Q 007195 239 NFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFL 318 (613)
Q Consensus 239 ~~~~~~~~lik~i~~ilq~~YPErL~ri~IINaP~~f~~lw~iVKpFLdpkTr~KI~~lg~~~~~~L~e~Id~e~LP~~y 318 (613)
+++++.+++++.+++++|+||||||+++||||+|++|.++|++++|||+++|++||+|+++++.+.|.++||+++||++|
T Consensus 162 ~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~I~~~~LP~~y 241 (403)
T 1olm_A 162 HLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVEY 241 (403)
T ss_dssp GGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTTSCGGGSBGGG
T ss_pred HHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEEChhHHHHHHhhcChhhCchhh
Confidence 99887889999999999999999999999999999999999999999999999999999988888999999999999999
Q ss_pred CCCCCCC
Q 007195 319 GGTCNCA 325 (613)
Q Consensus 319 GGt~~~~ 325 (613)
||+++++
T Consensus 242 GG~~~~~ 248 (403)
T 1olm_A 242 GGTMTDP 248 (403)
T ss_dssp TSSBCCT
T ss_pred CCCcCCC
Confidence 9999885
No 4
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=1e-44 Score=380.48 Aligned_cols=235 Identities=20% Similarity=0.334 Sum_probs=199.0
Q ss_pred cccCCCCHH--HHHHHHHHHHHHHhCCCCC-----------CCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCC
Q 007195 75 SIEDVRDVE--ELQAVDAFRQSLIMDELLP-----------ERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGV 141 (613)
Q Consensus 75 ~ied~~d~~--E~~al~efR~~L~~~~~Lp-----------~~~dD~~~LLRFLrArkfDvekA~~~l~~~l~WRke~~~ 141 (613)
+.+++++.+ .+++|++||+||.++++++ ...|| .+||||||||+||+++|++||.+|++||++++.
T Consensus 47 a~~eL~E~~~~~~~~l~~LR~wi~~~p~l~~~l~~~~~~~~~~~dD-~~LlRFLRarkfdv~kA~~~L~~~l~wR~~~~~ 125 (316)
T 3hx3_A 47 AKDELNEREETREEAVRELQEMVQAQAASGEELAVAVAERVQEKDS-GFFLRFIRARKFNVGRAYELLRGYVNFRLQYPE 125 (316)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHTTTCCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHhCCCccccccccccccCCCCCH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCch
Confidence 345555443 4789999999999999874 34566 599999999999999999999999999999983
Q ss_pred CCcccccchHHHHHHHhc-cCcccccCCCCCCcEEEEecCCCCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhh
Q 007195 142 DTIMEDFEFKEINEVLSY-YPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAK 220 (613)
Q Consensus 142 d~i~~d~~~~el~~vlk~-~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pacs~~~~ 220 (613)
++.+..++++..+++. ++.+++|+|++||||+|+++|++|+++ .+.+++++++++.+|.++.. ..
T Consensus 126 --~~~~~~~~~i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~----~~~~~~~r~~~~~lE~~l~~--------~~ 191 (316)
T 3hx3_A 126 --LFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQE----ITFDEILQAYCFILEKLLEN--------EE 191 (316)
T ss_dssp --GTTTCCHHHHHHHHHTTSSEECSSCCTTSCEEEEEECTTCCTTT----SCHHHHHHHHHHHHHHHTTS--------HH
T ss_pred --hhcCCCHHHHHHHHHcCCccccCCCCCCCCEEEEEecccCCCCC----CCHHHHHHHHHHHHHHHHhc--------cc
Confidence 3444555666665554 456789999999999999999999987 58899999999999998753 23
Q ss_pred CCCCCeEEEEeCCCCCCCCcchhHHHHHHHHHHHhccccccccceEEEEecChHHHHHHHHHHhcCChhhhcceEEcCcc
Q 007195 221 RHIDSSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNK 300 (613)
Q Consensus 221 ~~v~~~tiIiD~~G~sl~~~~~~~~~lik~i~~ilq~~YPErL~ri~IINaP~~f~~lw~iVKpFLdpkTr~KI~~lg~~ 300 (613)
.+++|+++|+|++|+|++|+.......++.+++++|+|||+||+++||||+|++|.++|+++++||+++|++||+|++++
T Consensus 192 ~~v~g~v~IiD~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~~~ 271 (316)
T 3hx3_A 192 TQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDD 271 (316)
T ss_dssp HHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEETC
T ss_pred CCcceEEEEEECCCCCHHHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeCCC
Confidence 46889999999999999987554567899999999999999999999999999999999999999999999999999876
Q ss_pred chHHHHcccCCCCCccccCCCCCCC
Q 007195 301 YQSKLLEIIDARELPEFLGGTCNCA 325 (613)
Q Consensus 301 ~~~~L~e~Id~e~LP~~yGGt~~~~ 325 (613)
+ +.|.++||+++||++|||++++.
T Consensus 272 ~-~~L~~~I~~~~LP~eyGG~~~~~ 295 (316)
T 3hx3_A 272 L-SGFYQEIDENILPSDFGGTLPKY 295 (316)
T ss_dssp C-HHHHHHSCGGGSBGGGTSSBCCC
T ss_pred H-HHHHhhCCHhhCcHhhCCCCCCc
Confidence 6 68999999999999999999863
No 5
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=1.9e-44 Score=366.35 Aligned_cols=228 Identities=24% Similarity=0.341 Sum_probs=194.1
Q ss_pred CHHHHHHHHHHHHHHHhCC--CCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCcccccchHHHHHHHh
Q 007195 81 DVEELQAVDAFRQSLIMDE--LLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLS 158 (613)
Q Consensus 81 d~~E~~al~efR~~L~~~~--~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~l~WRke~~~d~i~~d~~~~el~~vlk 158 (613)
++.|+++|++||+++.+++ ++|...|| .+|+||||||+||+++|.+||.+|++||++++. +..++.+.++....+
T Consensus 5 s~~~~~~l~~lr~~l~~~~~~~~~~~~dd-~~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~~--i~~~~~~~~~~~~~~ 81 (262)
T 1r5l_A 5 SPLLQPGLAALRRRAREAGVPLAPLPLTD-SFLLRFLRARDFDLDLAWRLLKNYYKWRAECPE--ISADLHPRSIIGLLK 81 (262)
T ss_dssp ----CTTHHHHHHHHHHHTCCCSSSCCCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCHH--HHSCCCGGGTHHHHH
T ss_pred cHHHHHHHHHHHHHHHhCCcccCCCCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChH--hhhcCChHHHHHHHH
Confidence 5778899999999998775 45667777 599999999999999999999999999999862 333334444444444
Q ss_pred c-cCcccccCCCCCCcEEEEecCCCCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCCeEEEEeCCCCCC
Q 007195 159 Y-YPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGL 237 (613)
Q Consensus 159 ~-~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pacs~~~~~~v~~~tiIiD~~G~sl 237 (613)
. ++.+++|+|++||||+|+++|++|+++ .+..++++++++.+|.++... ..++.|+++|+|++|+|+
T Consensus 82 ~g~~~~l~g~D~~GrpV~i~~~~~~d~~~----~~~~~~~r~~~~~~E~~~~~~--------~~~~~g~~~I~D~~g~s~ 149 (262)
T 1r5l_A 82 AGYHGVLRSRDPTGSKVLIYRIAHWDPKV----FTAYDVFRVSLITSELIVQEV--------ETQRNGIKAIFDLEGWQF 149 (262)
T ss_dssp TTCEEECSSCCTTCCEEEEEEGGGCCTTT----SCHHHHHHHHHHHHHHHTTSH--------HHHHHCEEEEEECTTCCH
T ss_pred cCCccCCCCcCCCCCEEEEEeccccCccc----CCHHHHHHHHHHHHHHHHhCh--------hhcccceEEEEECCCCCH
Confidence 4 356678999999999999999999987 477899999999999876531 234679999999999999
Q ss_pred CCcchhHHHHHHHHHHHhccccccccceEEEEecChHHHHHHHHHHhcCChhhhcceEEcCccchHHHHcccCCCCCccc
Q 007195 238 KNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEF 317 (613)
Q Consensus 238 ~~~~~~~~~lik~i~~ilq~~YPErL~ri~IINaP~~f~~lw~iVKpFLdpkTr~KI~~lg~~~~~~L~e~Id~e~LP~~ 317 (613)
+|+.....++++.+++++|+||||||+++||||+|++|+++|++++|||+++|++||+|+++++.+.|.++|| ++||++
T Consensus 150 ~~~~~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~~~~~~L~~~i~-~~LP~~ 228 (262)
T 1r5l_A 150 SHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFP-DILPLE 228 (262)
T ss_dssp HHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCSSCHHHHHHHST-TTSCGG
T ss_pred HHHhccCHHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeCCCcHHHHHHHhh-hhCcHh
Confidence 9986655789999999999999999999999999999999999999999999999999999888889999999 999999
Q ss_pred cCCCCCC
Q 007195 318 LGGTCNC 324 (613)
Q Consensus 318 yGGt~~~ 324 (613)
|||++..
T Consensus 229 yGG~~~~ 235 (262)
T 1r5l_A 229 YGGEEFS 235 (262)
T ss_dssp GTCSSCC
T ss_pred hCCCCCC
Confidence 9999754
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.06 E-value=8.1e-11 Score=119.70 Aligned_cols=135 Identities=13% Similarity=0.150 Sum_probs=108.4
Q ss_pred hccCcccccCCCCCCcEEEEecCCCCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCCeEEEEeCCCCCC
Q 007195 158 SYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGL 237 (613)
Q Consensus 158 k~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pacs~~~~~~v~~~tiIiD~~G~sl 237 (613)
+....+..|.|++||||+++.+++++... .+++.++.|++..+++.. -...++|+|+.|++.
T Consensus 9 ~~~ify~~G~d~dGrpViv~~~~~l~~~~----~D~e~Ll~~vl~tl~~~~--------------~~~y~lV~d~T~~~~ 70 (256)
T 3pg7_A 9 TLSIFYQAGTSKAGNPIFYYVARRFKTGQ----INGDLLIYHVLLTLKPYY--------------AKPYEIVVDLTHTGP 70 (256)
T ss_dssp HHTSEEEEEECTTSCEEEEEEGGGCCBTT----BCHHHHHHHHHHHHTTTT--------------TSCEEEEEECTTCCG
T ss_pred HcCCEEEcCcCCCCCEEEEEEeecCCCCC----CCHHHHHHHHHHHHHHhc--------------CCCeEEEEECCCCCc
Confidence 33344445899999999999999998765 467777777766665443 246899999999998
Q ss_pred CCcchhHHHHHHHHHHHhccccccccceEEEEecChHHHHHHHH-HHhcCChhhhcceEEcCccchHHHHcccCCCCC
Q 007195 238 KNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNT-VKSFLDPKTTSKIHVLGNKYQSKLLEIIDAREL 314 (613)
Q Consensus 238 ~~~~~~~~~lik~i~~ilq~~YPErL~ri~IINaP~~f~~lw~i-VKpFLdpkTr~KI~~lg~~~~~~L~e~Id~e~L 314 (613)
.+.+. .++++.+..++...|...|+++||+|++++|+..|+. .++|.+.+...|++++++ .++|.++|+.++|
T Consensus 71 ~n~p~--~~wl~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~s--l~eL~~~i~~~~L 144 (256)
T 3pg7_A 71 SNRFK--TDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC--PGKLAEHIEHEQQ 144 (256)
T ss_dssp GGCCC--HHHHHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESS--TTGGGGTSCGGGC
T ss_pred ccCCc--HHHHHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECC--HHHHHhhcCHHHc
Confidence 76553 7889999999999999999999999999999977665 455666688889999965 4889999987776
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=98.82 E-value=1.5e-09 Score=112.15 Aligned_cols=130 Identities=14% Similarity=0.161 Sum_probs=96.3
Q ss_pred ccccCCCCCCcEEEEecCCCCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhHhhhCCCCCeEEEEeCCCCCCCCcch
Q 007195 163 GYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFSK 242 (613)
Q Consensus 163 ~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~~~~ir~~v~~~E~~l~~~~pacs~~~~~~v~~~tiIiD~~G~sl~~~~~ 242 (613)
+..|.|++||||+++.+++++... .+.+.++-|++..+++.. -...++|+|+.|++..+-+.
T Consensus 33 ~~~g~d~dG~PViv~~~~~~~~~~----~D~e~Lly~il~tl~~~~--------------~~~y~lV~D~T~~~~~n~p~ 94 (290)
T 3peg_A 33 YQAGTSKAGNPIFYYVARRFKTGQ----INGDLLIYHVLLTLKPYY--------------AKPYEIVVDLTHTGPSNRFK 94 (290)
T ss_dssp EEEEECTTSCEEEEEEGGGCCBTT----BCHHHHHHHHHHHHTTTT--------------TSCEEEEEECTTCCGGGCCC
T ss_pred EEeccCCCCCEEEEEEeecCCccC----CCHHHHHHHHHHHHHHhc--------------CCCeEEEEEcCCCCccCCCh
Confidence 334889999999999999998765 467767666665555433 24789999999999876543
Q ss_pred hHHHHHHHHHHHhccccccccceEEEEecChHHHHHH-HHHHhcCChhhhcceEEcCccchHHHHcccCCCCC
Q 007195 243 NARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLW-NTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDAREL 314 (613)
Q Consensus 243 ~~~~lik~i~~ilq~~YPErL~ri~IINaP~~f~~lw-~iVKpFLdpkTr~KI~~lg~~~~~~L~e~Id~e~L 314 (613)
.++++.+..++...|+..|+++||+|++++|+..+ ...++|...+.-.|+.++... ..|..+++.+++
T Consensus 95 --~~~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~~--~~L~~~i~~~~~ 163 (290)
T 3peg_A 95 --TDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCP--GKLAEHIEHEQQ 163 (290)
T ss_dssp --HHHHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESSS--CC----------
T ss_pred --HHHHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCCH--HHHHhhCCHHHh
Confidence 78899999999999999999999999999998754 566778888888999998653 448888887754
No 8
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=73.98 E-value=0.86 Score=31.23 Aligned_cols=16 Identities=19% Similarity=0.453 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhcCC
Q 007195 536 KRLSELEEKVDTLQAK 551 (613)
Q Consensus 536 kRl~eLEekv~~L~~K 551 (613)
+||..||+||++|-.+
T Consensus 1 ~RMnQLEdkVEeLl~~ 16 (34)
T 2hy6_A 1 MKVKQLADAVEELASA 16 (34)
T ss_dssp --CHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHh
Confidence 5888999999887643
No 9
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=73.46 E-value=0.9 Score=31.18 Aligned_cols=16 Identities=25% Similarity=0.642 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhcCC
Q 007195 536 KRLSELEEKVDTLQAK 551 (613)
Q Consensus 536 kRl~eLEekv~~L~~K 551 (613)
+||..||+||.+|-.+
T Consensus 1 eRMnQLEdKvEeLl~~ 16 (34)
T 2bni_A 1 XRMKQIEDKLEEILSK 16 (34)
T ss_dssp --CHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHc
Confidence 5899999999888543
No 10
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=71.09 E-value=4.8 Score=27.57 Aligned_cols=30 Identities=37% Similarity=0.512 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHH
Q 007195 536 KRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDAL 573 (613)
Q Consensus 536 kRl~eLEekv~~L~~KP~~mP~EKEe~L~aa~~Rvdal 573 (613)
+||..||+||.+|-.+ |+ -|.+-|.|.++|
T Consensus 1 eRMnQLE~kVEeLl~~-------n~-~Le~eV~rLk~l 30 (34)
T 2oxj_A 1 XRMXQLEXKVXELLXK-------NX-HLEXEVXRLKXL 30 (34)
T ss_dssp -CHHHHHHHHHHHHHH-------HH-HHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHh-------hh-hHHHHHHHHHHH
Confidence 5899999999887542 32 344555555544
No 11
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=70.72 E-value=6.1 Score=27.03 Aligned_cols=15 Identities=20% Similarity=0.499 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHhcC
Q 007195 536 KRLSELEEKVDTLQA 550 (613)
Q Consensus 536 kRl~eLEekv~~L~~ 550 (613)
+||..||+||.+|-.
T Consensus 1 eRMnQLEdKVEeLl~ 15 (34)
T 3c3f_A 1 XRMXQIEXKLEXILS 15 (34)
T ss_dssp -CHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHh
Confidence 589999999988753
No 12
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=70.24 E-value=1.3 Score=30.18 Aligned_cols=14 Identities=21% Similarity=0.579 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhcC
Q 007195 537 RLSELEEKVDTLQA 550 (613)
Q Consensus 537 Rl~eLEekv~~L~~ 550 (613)
||..||+||.+|-.
T Consensus 1 RMnQLEdKvEeLl~ 14 (33)
T 3c3g_A 1 RMKXIEXKLXEIXS 14 (33)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHH
Confidence 78889999988754
No 13
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=69.92 E-value=4.7 Score=27.68 Aligned_cols=15 Identities=20% Similarity=0.501 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhcC
Q 007195 536 KRLSELEEKVDTLQA 550 (613)
Q Consensus 536 kRl~eLEekv~~L~~ 550 (613)
.||..||+||++|-.
T Consensus 1 ~RM~QLEdKVEeLl~ 15 (34)
T 1uo4_A 1 XRMKQIEDKGEEILS 15 (34)
T ss_dssp --CHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHH
Confidence 388899999987743
No 14
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=69.69 E-value=6.7 Score=26.71 Aligned_cols=14 Identities=29% Similarity=0.634 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhcC
Q 007195 537 RLSELEEKVDTLQA 550 (613)
Q Consensus 537 Rl~eLEekv~~L~~ 550 (613)
||..||+||.+|-.
T Consensus 1 RMnQLEdKVEell~ 14 (33)
T 2wq1_A 1 RMKQLEDKIEENTS 14 (33)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHH
Confidence 78889999987754
No 15
>3a8y_C BAG family molecular chaperone regulator 5; BAG domain, HSP70, ATPase domain, protein complex, triple helix, structural genomics, NPPSFA; 2.30A {Homo sapiens}
Probab=69.38 E-value=13 Score=33.82 Aligned_cols=69 Identities=25% Similarity=0.386 Sum_probs=52.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhcCCCCCCChhHH-----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHH
Q 007195 527 EVDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKE-----ELLHAAVCRVDALEAE----LIATKKALHEALMRQEDLLAY 597 (613)
Q Consensus 527 ~~~~~~~~~kRl~eLEekv~~L~~KP~~mP~EKE-----e~L~aa~~RvdalE~e----L~~TKKaL~~al~kQ~El~ay 597 (613)
.-..+..+..++++|+.+|+....| +.||| |||.--+=+.|++|.+ +-..+|+ ++-+=.-++++
T Consensus 32 ~~~aI~~V~~eVd~L~~eV~~F~G~----~~dkey~~L~E~L~k~LLKLD~IdteGd~~vR~aRK~---aVk~VQ~~Le~ 104 (142)
T 3a8y_C 32 SHKAVWNVLGNLSEIQGEVLSFDGN----RTDKNYIRLEELLTKQLLALDAVDPQGEEKCKAARKQ---AVRLAQNILSY 104 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSC----TTSHHHHHHHHHHHHHHHHHHTCCCTTCHHHHHHHHH---HHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHhcCC----chHHHHHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHH---HHHHHHHHHHH
Confidence 3446888999999999999999777 57774 7899999999999887 4455554 44454567778
Q ss_pred HHHHH
Q 007195 598 IDRQE 602 (613)
Q Consensus 598 ie~~k 602 (613)
||.++
T Consensus 105 LD~k~ 109 (142)
T 3a8y_C 105 LDLKS 109 (142)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 87755
No 16
>1m7k_A Silencer of death domains; three helix bundle, chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=67.74 E-value=10 Score=32.53 Aligned_cols=68 Identities=18% Similarity=0.372 Sum_probs=49.3
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhcCCCCCCChhHH-----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHH
Q 007195 526 TEVDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKE-----ELLHAAVCRVDALEAE----LIATKKALHEALMRQEDLLA 596 (613)
Q Consensus 526 ~~~~~~~~~~kRl~eLEekv~~L~~KP~~mP~EKE-----e~L~aa~~RvdalE~e----L~~TKKaL~~al~kQ~El~a 596 (613)
..-.-+..+...+.+|+..|+.+..++ .||| |||.--+=.+|++|.| +-..+|++ +-+=.-+++
T Consensus 21 ~~~~kI~~I~~ev~~L~~~V~~f~G~k----~dkey~~L~E~L~k~LLkLD~IeteG~~~vR~~RK~~---Vk~iQ~~l~ 93 (99)
T 1m7k_A 21 PSIKKIIHVLEKVQYLEQEVEEFVGKK----TDKAYWLLEEMLTKELLELDSVETGGQDSVRQARKEA---VCKIQAILE 93 (99)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCCSCT----TSHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHH---HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCc----hHHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHHH---HHHHHHHHH
Confidence 344568899999999999999999874 6674 7888889999999887 54555543 333344555
Q ss_pred HHHH
Q 007195 597 YIDR 600 (613)
Q Consensus 597 yie~ 600 (613)
+||.
T Consensus 94 ~LD~ 97 (99)
T 1m7k_A 94 KLEK 97 (99)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5554
No 17
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=66.40 E-value=5.7 Score=27.13 Aligned_cols=13 Identities=46% Similarity=0.756 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHhc
Q 007195 537 RLSELEEKVDTLQ 549 (613)
Q Consensus 537 Rl~eLEekv~~L~ 549 (613)
||..||+||++|-
T Consensus 1 RM~QLE~kVEeLl 13 (33)
T 3m48_A 1 RMAQLEAKVEELL 13 (33)
T ss_dssp --CHHHHHHHHHH
T ss_pred CccHHHHHHHHHH
Confidence 7888999998774
No 18
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.19 E-value=10 Score=30.20 Aligned_cols=48 Identities=25% Similarity=0.302 Sum_probs=35.8
Q ss_pred cCCCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 007195 77 EDVRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (613)
Q Consensus 77 ed~~d~~E~~al~efR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~ 132 (613)
..+...+..+++++|++.+ +..|. ..+..-|+++++|++.|++.|.++
T Consensus 11 ~~~~~~~~~~~v~~L~~MF-------P~lD~-~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 11 RQVRRLEFNQAMDDFKTMF-------PNMDY-DIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp CCCCCCCSHHHHHHHHHHC-------SSSCH-HHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred hhccCCCHHHHHHHHHHHC-------CCCCH-HHHHHHHHHcCCCHHHHHHHHHhc
Confidence 3333445567888888876 23454 588999999999999999998664
No 19
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=63.67 E-value=8.9 Score=26.60 Aligned_cols=14 Identities=21% Similarity=0.539 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHhc
Q 007195 536 KRLSELEEKVDTLQ 549 (613)
Q Consensus 536 kRl~eLEekv~~L~ 549 (613)
+||..||+||.+|-
T Consensus 1 eRMnQLE~kVEeLl 14 (36)
T 1kd8_A 1 XEVKQLEAEVEEIE 14 (36)
T ss_dssp -CCHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHH
Confidence 47788888887764
No 20
>1m62_A BAG-family molecular chaperone regulator-4; BAG domain, SODD, silencer of death domains, HSP70/HSC70 CO-chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=63.64 E-value=22 Score=29.75 Aligned_cols=66 Identities=18% Similarity=0.382 Sum_probs=48.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCCChhHH-----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHH
Q 007195 528 VDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKE-----ELLHAAVCRVDALEAE----LIATKKALHEALMRQEDLLAYI 598 (613)
Q Consensus 528 ~~~~~~~~kRl~eLEekv~~L~~KP~~mP~EKE-----e~L~aa~~RvdalE~e----L~~TKKaL~~al~kQ~El~ayi 598 (613)
-.-+..+...+.+|+..|+....| +.||| |||.--+=.+|++|.| +-+.+|++ +-+=.-++++|
T Consensus 10 ~~~I~~I~~ev~~L~~~V~~f~g~----~~dkey~~L~E~L~k~LLkLD~Ie~eG~~~~R~~RK~~---Vk~iQ~~l~~L 82 (87)
T 1m62_A 10 IKKIIHVLEKVQYLEQEVEEFVGK----KTDKAYWLLEEMLTKELLELDSVETGGQDSVRQARKEA---VCKIQAILEKL 82 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCC----TTSHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC----cchHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHHH---HHHHHHHHHHH
Confidence 446788889999999999999987 46774 7899999999999887 55555543 33334455566
Q ss_pred HH
Q 007195 599 DR 600 (613)
Q Consensus 599 e~ 600 (613)
|.
T Consensus 83 D~ 84 (87)
T 1m62_A 83 EK 84 (87)
T ss_dssp HH
T ss_pred Hh
Confidence 55
No 21
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=60.90 E-value=39 Score=28.06 Aligned_cols=66 Identities=20% Similarity=0.164 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCC----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007195 536 KRLSELEEKVDTLQAKPSEMP----YEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQ 601 (613)
Q Consensus 536 kRl~eLEekv~~L~~KP~~mP----~EKEe~L~aa~~RvdalE~eL~~TKKaL~~al~kQ~El~ayie~~ 601 (613)
+|-.+|=+.+..|..-=|.+| ..|-.+|..|++=|+.|+.+...-..-...--.+|.+|.+-|+..
T Consensus 16 ~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 16 QRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677888888888877666565 589999999999999999887665544444445666666665543
No 22
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=59.37 E-value=11 Score=29.30 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 007195 85 LQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (613)
Q Consensus 85 ~~al~efR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~ 132 (613)
++.+++|++.. +..|. ..+-.-|++++.|++.|+.+|.++
T Consensus 10 ee~l~~L~emF-------P~ld~-~~I~~vL~a~~gdvd~aI~~LL~m 49 (59)
T 1wgl_A 10 EEDLKAIQDMF-------PNMDQ-EVIRSVLEAQRGNKDAAINSLLQM 49 (59)
T ss_dssp HHHHHHHHHHC-------SSSCH-HHHHHHHTTTTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHC-------CCCCH-HHHHHHHHHcCCCHHHHHHHHHcC
Confidence 36677777765 23455 489999999999999999998653
No 23
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.89 E-value=41 Score=26.47 Aligned_cols=44 Identities=11% Similarity=0.062 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Q 007195 79 VRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWA 130 (613)
Q Consensus 79 ~~d~~E~~al~efR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~ 130 (613)
-+...+.+.|.+|...-. ..|...-..||.+.+||++.|+..+-
T Consensus 13 ~Ls~~~~e~i~qF~~ITg--------~~d~~~A~~~Le~~~WnLe~Av~~ff 56 (67)
T 2dam_A 13 DLTQEQTEKLLQFQDLTG--------IESMDQCRHTLEQHNWNIEAAVQDRL 56 (67)
T ss_dssp CCCHHHHHHHHHHHHHHC--------CSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred hcChhHHHHHHHHHHHhC--------CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 346677788999998762 12445789999999999999988764
No 24
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=57.27 E-value=19 Score=24.94 Aligned_cols=16 Identities=31% Similarity=0.621 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhcCC
Q 007195 536 KRLSELEEKVDTLQAK 551 (613)
Q Consensus 536 kRl~eLEekv~~L~~K 551 (613)
+||..||+||.+|-.+
T Consensus 1 eRMnQLE~KVEeLl~~ 16 (36)
T 1kd8_B 1 XKVKQLKAKVEELKSK 16 (36)
T ss_dssp -CHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHH
Confidence 5888999999887543
No 25
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=56.22 E-value=52 Score=26.68 Aligned_cols=63 Identities=10% Similarity=0.181 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 007195 536 KRLSELEEKVDTLQAKPSEMP---YEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYI 598 (613)
Q Consensus 536 kRl~eLEekv~~L~~KP~~mP---~EKEe~L~aa~~RvdalE~eL~~TKKaL~~al~kQ~El~ayi 598 (613)
+|...|=+.+..|.+=-|..| ..|-.+|..|++=|+.|+.+...-+.-+.+--..+.+|-+-|
T Consensus 12 ~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 12 KRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677778888888876544332 489999999999999999887766555444444444444333
No 26
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=53.04 E-value=20 Score=24.60 Aligned_cols=16 Identities=19% Similarity=0.524 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhcCC
Q 007195 536 KRLSELEEKVDTLQAK 551 (613)
Q Consensus 536 kRl~eLEekv~~L~~K 551 (613)
+||..||+||.+|-+|
T Consensus 1 ~RMnQledKvEel~~~ 16 (34)
T 2r2v_A 1 MKLKQVADKLEEVASK 16 (34)
T ss_dssp -CHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHH
Confidence 4888999999888654
No 27
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=45.63 E-value=1.3e+02 Score=27.42 Aligned_cols=69 Identities=22% Similarity=0.364 Sum_probs=51.9
Q ss_pred chhhhHHHHHHHH--------HHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 007195 526 TEVDLLSSVTKRL--------SELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAY 597 (613)
Q Consensus 526 ~~~~~~~~~~kRl--------~eLEekv~~L~~KP~~mP~EKEe~L~aa~~RvdalE~eL~~TKKaL~~al~kQ~El~ay 597 (613)
.+.+.|..-+++| +..|.-++.| |..=-.|.|+ +.||+.||.|+...-+-|.+++.+=++|++-
T Consensus 50 ~~~~~f~~~~~ela~dli~kakqIe~LIdsL---Pg~~~seeeQ-----~~ri~~Le~E~~~~~~el~~~v~eae~ll~~ 121 (151)
T 1yke_B 50 VPPEEFSNTIDELSTDIILKTRQINKLIDSL---PGVDVSAEEQ-----LRKIDMLQKKLVEVEDEKIEAIKKKEKLLRH 121 (151)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---TTSSSCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666 6777777777 3322344444 5899999999999999999999999999998
Q ss_pred HHHHH
Q 007195 598 IDRQE 602 (613)
Q Consensus 598 ie~~k 602 (613)
|+..-
T Consensus 122 v~~~l 126 (151)
T 1yke_B 122 VDSLI 126 (151)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 28
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.44 E-value=48 Score=25.57 Aligned_cols=40 Identities=13% Similarity=0.074 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHH
Q 007195 81 DVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMW 129 (613)
Q Consensus 81 d~~E~~al~efR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l 129 (613)
...+.+.|.+|...-. .+......||.+.+||++.|+..+
T Consensus 12 s~~~~e~i~qF~~iTg---------~~~~~A~~~Le~~~WnLe~Av~~f 51 (62)
T 2dal_A 12 SSALKGLIQQFTTITG---------ASESVGKHMLEACNNNLEMAVTMF 51 (62)
T ss_dssp CHHHHHHHHHHHHHTC---------CCHHHHHHHHHTTTSCHHHHHHHH
T ss_pred CccHHHHHHHHHHHhC---------CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5666778888886542 123578999999999999998776
No 29
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=43.99 E-value=1e+02 Score=23.20 Aligned_cols=46 Identities=9% Similarity=0.167 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 007195 559 KEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEA 604 (613)
Q Consensus 559 KEe~L~aa~~RvdalE~eL~~TKKaL~~al~kQ~El~ayie~~k~~ 604 (613)
.++-+...=.+++.++.++..+|..|..+...+..+.+.|.+++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556888899999999999999999999999999888654
No 30
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=41.96 E-value=42 Score=23.85 Aligned_cols=37 Identities=16% Similarity=0.152 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHH
Q 007195 84 ELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMW 129 (613)
Q Consensus 84 E~~al~efR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l 129 (613)
+.+.|.+|...-. . +......||.+.+||++.|+..+
T Consensus 5 ~~~~i~~F~~iTg--------~-~~~~A~~~L~~~~wdle~Ai~~f 41 (46)
T 1v92_A 5 RQDALREFVAVTG--------A-EEDRARFFLESAGWDLQIALASF 41 (46)
T ss_dssp HHHHHHHHHHHTC--------C-CHHHHHHHHHHTTSCSHHHHHHH
T ss_pred HHHHHHHHHHHhC--------c-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 4567888876441 1 23578999999999999998766
No 31
>1ugo_A BCL2-associated athanogene 5; triple helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics, chaperone; NMR {Mus musculus} SCOP: a.7.7.1
Probab=40.73 E-value=39 Score=28.89 Aligned_cols=66 Identities=20% Similarity=0.337 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCCCChhH-----HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHH
Q 007195 529 DLLSSVTKRLSELEEKVDTLQAKPSEMPYEK-----EELLHAAVCRVDALEAEL----IATKKALHEALMRQEDLLAYID 599 (613)
Q Consensus 529 ~~~~~~~kRl~eLEekv~~L~~KP~~mP~EK-----Ee~L~aa~~RvdalE~eL----~~TKKaL~~al~kQ~El~ayie 599 (613)
..+..+...+.+|+..|.....|+ .|| +|||.--+=++|++|.|= -..+|+ ++-+=.-++++||
T Consensus 18 ~kI~~I~~ev~~L~~~V~~f~g~k----~dkey~~L~E~L~k~LLkLD~IeteG~~~iR~~RK~---~Vk~iQ~~l~~LD 90 (99)
T 1ugo_A 18 SRLQEIQREVKAIEPQVVGFSGLS----DDKNYKRLERILTKQLFEIDSVDTEGKGDIQQARKR---AAQETERLLKELE 90 (99)
T ss_dssp HHHHHHHHHHHHSHHHHHTCCCCT----TSSHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCc----hhHHHHHHHHHHHHHHHHHcCcCcCCcHHHHHHHHH---HHHHHHHHHHHHH
Confidence 467888899999999999998887 355 488888888999998763 333333 3333345566666
Q ss_pred HH
Q 007195 600 RQ 601 (613)
Q Consensus 600 ~~ 601 (613)
.+
T Consensus 91 ~k 92 (99)
T 1ugo_A 91 QN 92 (99)
T ss_dssp HH
T ss_pred hc
Confidence 53
No 32
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=39.98 E-value=2e+02 Score=26.67 Aligned_cols=68 Identities=9% Similarity=0.181 Sum_probs=51.2
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 007195 524 SLTEVDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYIDRQEE 603 (613)
Q Consensus 524 ~~~~~~~~~~~~kRl~eLEekv~~L~~KP~~mP~EKEe~L~aa~~RvdalE~eL~~TKKaL~~al~kQ~El~ayie~~k~ 603 (613)
.+.+.+++...+++|++|+..+..+ |..+|+.+.||+.=.+.. .+..+...---|..|.+|.+..+.
T Consensus 11 ~i~~~~~~~~alr~ia~l~r~~~~i-----------~~~~n~eI~~ik~~~~~~--~~~l~~~i~~l~~~l~~y~e~~r~ 77 (171)
T 2p2u_A 11 IVADIRQAEGALAEIATIDRKVGEI-----------EAQMNEAIDAAKARASQK--SAPLLARRKELEDGVATFATLNKT 77 (171)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4578888999999999999999876 556899888888655444 334445555567788899988864
Q ss_pred h
Q 007195 604 A 604 (613)
Q Consensus 604 ~ 604 (613)
.
T Consensus 78 e 78 (171)
T 2p2u_A 78 E 78 (171)
T ss_dssp H
T ss_pred H
Confidence 3
No 33
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=39.65 E-value=20 Score=33.52 Aligned_cols=78 Identities=14% Similarity=0.103 Sum_probs=42.9
Q ss_pred ccchhhhhhhcccCCCCCCCccccccccCCCCHHHHHH-HHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHH
Q 007195 50 ASTKFKHSLKKKSSRRKSDGRVSSVSIEDVRDVEELQA-VDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHM 128 (613)
Q Consensus 50 ~s~~~~~s~~k~~~~r~~~~~v~s~~ied~~d~~E~~a-l~efR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~ 128 (613)
...+++.-|+.|| .+..+..-.++++.++++.+. ...++..+......+ ......-+.+||..++|+.+.+...
T Consensus 85 G~~~I~~eL~~KG----I~~~~I~~al~~~~~~de~e~a~~l~~Kk~~~~~~~~-~~~~~~K~~~~L~rrGF~~~~I~~v 159 (177)
T 3e3v_A 85 GPKVIKLNLSKKG----IDDNIAEDALILYTDKLQVEKGVTLAEKLANRYSHDS-YRNKQNKIKQSLLTKGFSYDIIDTI 159 (177)
T ss_dssp CHHHHHHHHHTTT----CCHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTTSC-HHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred cHHHHHHHHHHcC----CCHHHHHHHHHhCCchhHHHHHHHHHHHHHhhccCCC-hHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 4556788888887 444433333444433344333 333333333211110 0111236889999999999988877
Q ss_pred HHHH
Q 007195 129 WAEM 132 (613)
Q Consensus 129 l~~~ 132 (613)
+.+.
T Consensus 160 l~~l 163 (177)
T 3e3v_A 160 IQEL 163 (177)
T ss_dssp HHHH
T ss_pred HHHC
Confidence 7653
No 34
>1uk5_A BAG-family molecular chaperone regulator-3; triple helix bandle, CAIR-1, BIS, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.7.7.1
Probab=38.91 E-value=67 Score=28.00 Aligned_cols=68 Identities=18% Similarity=0.403 Sum_probs=50.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCCChhHH-----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHH
Q 007195 528 VDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKE-----ELLHAAVCRVDALEAE----LIATKKALHEALMRQEDLLAYI 598 (613)
Q Consensus 528 ~~~~~~~~kRl~eLEekv~~L~~KP~~mP~EKE-----e~L~aa~~RvdalE~e----L~~TKKaL~~al~kQ~El~ayi 598 (613)
-..+..+...+.+|+..|+....++ .||| |||.--+=++|+||.| +-..+|+ ++-+=.-++++|
T Consensus 29 ~~~I~~I~~eV~~L~~qV~~f~g~k----~dkey~~L~E~L~k~LLkLD~IeteG~~~vR~aRK~---aVk~iQ~~l~~L 101 (111)
T 1uk5_A 29 VLKVEAILEKVQGLEQAVDSFEGKK----TDKKYLMIEEYLTKELLALDSVDPEGRADVRQARRD---GVRKVQTILEKL 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSCS----SSHHHHHHHHHHHHHHHHHHSCCCSSCHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCc----chHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHH---HHHHHHHHHHHH
Confidence 4567888889999999999998876 6774 7899999999999887 4444544 344445566777
Q ss_pred HHHH
Q 007195 599 DRQE 602 (613)
Q Consensus 599 e~~k 602 (613)
|.+.
T Consensus 102 D~k~ 105 (111)
T 1uk5_A 102 EQKA 105 (111)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 7643
No 35
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=38.50 E-value=78 Score=25.66 Aligned_cols=58 Identities=19% Similarity=0.173 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 007195 532 SSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQED 593 (613)
Q Consensus 532 ~~~~kRl~eLEekv~~L~~KP~~mP~EKEe~L~aa~~RvdalE~eL~~TKKaL~~al~kQ~E 593 (613)
-....|+..+|.++.....+- ...|+-+.+=-.||..||.||+.+.-.|.++..+-++
T Consensus 16 d~a~~~~~~~e~~l~~~e~~~----~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 16 ENALDRAEQAEADKKAAEERS----KQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666554332 3456667777789999999999999999888777554
No 36
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=37.04 E-value=2.2e+02 Score=25.22 Aligned_cols=67 Identities=21% Similarity=0.385 Sum_probs=50.5
Q ss_pred hhhhHHHHHHHH--------HHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 007195 527 EVDLLSSVTKRL--------SELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAYI 598 (613)
Q Consensus 527 ~~~~~~~~~kRl--------~eLEekv~~L~~KP~~mP~EKEe~L~aa~~RvdalE~eL~~TKKaL~~al~kQ~El~ayi 598 (613)
+.+.|..-.++| ...|.-++.| |..=-.|.|+ +.||+.||.|+...-+-|.+++.+=++|++-|
T Consensus 51 ~~~~f~~~~~ela~dli~k~kqIe~LIdsL---P~~~~see~Q-----~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v 122 (132)
T 1ykh_B 51 PPEEFSNTIDELSTDIILKTRQINKLIDSL---PGVDVSAEEQ-----LRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHV 122 (132)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---TTTTCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666 6777777777 3322344444 58999999999999999999999999999988
Q ss_pred HHH
Q 007195 599 DRQ 601 (613)
Q Consensus 599 e~~ 601 (613)
+..
T Consensus 123 ~~~ 125 (132)
T 1ykh_B 123 DSM 125 (132)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 37
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=36.91 E-value=1.3e+02 Score=30.73 Aligned_cols=65 Identities=14% Similarity=0.137 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcCCCCCCChh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHH
Q 007195 539 SELEEKVDTLQAKPSEMPYE-----KEELLHAAVCRVDALEAELIATKKALHEALMR-QEDLLAYIDRQEE 603 (613)
Q Consensus 539 ~eLEekv~~L~~KP~~mP~E-----KEe~L~aa~~RvdalE~eL~~TKKaL~~al~k-Q~El~ayie~~k~ 603 (613)
+++++-+..++-..-.+|.+ =.++|..--.|+..|+.+|..+++.|.+-+.+ ...|.++.+....
T Consensus 199 ~~v~~il~s~~f~~~~~p~~~~~~~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~ 269 (357)
T 3rrk_A 199 EAARSSLSRLGLAELRFPGAYGAMPLGKAAARMKERARLAPEELVGIREEVARLSRESGEALIALWTRAKD 269 (357)
T ss_dssp HHHHHHHHTTTCCBCCCCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCeeccCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888889953 35888899999999999999999999999888 7777777666653
No 38
>2q9q_C DNA replication complex GINS protein PSF1; elongated spindle, helix bundle, replication; HET: DNA; 2.36A {Homo sapiens}
Probab=35.46 E-value=84 Score=29.76 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=14.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHH
Q 007195 554 EMPYEKEELLHAAVCRVDALEAELIA 579 (613)
Q Consensus 554 ~mP~EKEe~L~aa~~RvdalE~eL~~ 579 (613)
++||=.++++..-+.+|+.+++++.+
T Consensus 20 ~L~py~~dlv~~v~~ei~~~~~~~~~ 45 (196)
T 2q9q_C 20 QLPAFNEDGLRQVLEEMKALYEQNQS 45 (196)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555443
No 39
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=33.65 E-value=28 Score=25.03 Aligned_cols=15 Identities=53% Similarity=0.702 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHhc
Q 007195 535 TKRLSELEEKVDTLQ 549 (613)
Q Consensus 535 ~kRl~eLEekv~~L~ 549 (613)
=.|.+|||++|.+|+
T Consensus 16 e~~naeLEervstLq 30 (42)
T 2oqq_A 16 ENKNSELEERLSTLQ 30 (42)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345556666655554
No 40
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=32.16 E-value=1e+02 Score=22.45 Aligned_cols=37 Identities=11% Similarity=0.176 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHH
Q 007195 84 ELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHM 128 (613)
Q Consensus 84 E~~al~efR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~ 128 (613)
..+.|.+|.+.- ..+|...-..||.+.+||++.|+..
T Consensus 5 ~de~ia~F~~iT--------G~~d~~~A~~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 5 REMILADFQACT--------GIENIDEAITLLEQNNWDLVAAING 41 (45)
T ss_dssp HHHHHHHHHHHH--------CCCCHHHHHHHHHHTTTCHHHHHTT
T ss_pred HHHHHHHHHHHH--------CCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 456788888754 2345346789999999999999753
No 41
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=31.09 E-value=79 Score=26.16 Aligned_cols=41 Identities=24% Similarity=0.305 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 007195 85 LQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (613)
Q Consensus 85 ~~al~efR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~ 132 (613)
...|+++|..|-. ...| ..|.+-....+||+++|+..+-+-
T Consensus 35 ~SCLd~iR~VlGd------sV~e-~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 35 YSCLDHMREVLGD------AVPD-DILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHHHHHHHHHTTT------TSCH-HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc------cCCH-HHHHHHHHHhcCCHHHHHHHHHhc
Confidence 4678889988842 3445 478888889999999999988643
No 42
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=30.91 E-value=66 Score=23.90 Aligned_cols=25 Identities=12% Similarity=0.037 Sum_probs=21.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Q 007195 108 YHMMLRFLKARKFDIDKAKHMWAEM 132 (613)
Q Consensus 108 ~~~LLRFLrArkfDvekA~~~l~~~ 132 (613)
...+-+-|+++++|++.|+++|.+.
T Consensus 20 ~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 20 KSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 3478899999999999999998765
No 43
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=30.90 E-value=1.1e+02 Score=24.60 Aligned_cols=45 Identities=18% Similarity=0.261 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 007195 79 VRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (613)
Q Consensus 79 ~~d~~E~~al~efR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~ 131 (613)
+...+-...|.++++.+ |. ..+ .++.+.|..++.|+|.++..|-+
T Consensus 8 ~~~~~l~s~I~qV~DLf------Pd-LG~-gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 8 MCGVELDSLISQVKDLL------PD-LGE-GFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp CSSHHHHHHHHHHHHHC------CS-SCH-HHHHHHHHHTTTCHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHc------cc-CCH-HHHHHHHHHhCCCHHHHHHHHHc
Confidence 33566678888888776 33 345 38999999999999999988854
No 44
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=30.64 E-value=74 Score=21.64 Aligned_cols=21 Identities=24% Similarity=0.137 Sum_probs=17.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHH
Q 007195 109 HMMLRFLKARKFDIDKAKHMW 129 (613)
Q Consensus 109 ~~LLRFLrArkfDvekA~~~l 129 (613)
+...+.|+++++|++.|...|
T Consensus 19 ~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 19 LEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHH
Confidence 356899999999999998754
No 45
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=30.23 E-value=1.2e+02 Score=26.81 Aligned_cols=74 Identities=15% Similarity=0.243 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCC--------------hhHHHHHHHHHHHHHHHHH----------------HHHHHH
Q 007195 532 SSVTKRLSELEEKVDTLQAKPSEMP--------------YEKEELLHAAVCRVDALEA----------------ELIATK 581 (613)
Q Consensus 532 ~~~~kRl~eLEekv~~L~~KP~~mP--------------~EKEe~L~aa~~RvdalE~----------------eL~~TK 581 (613)
.+++-||..||..+..|..+-.++= .+.++|.+.--.|+.-|++ ++.+.+
T Consensus 5 ~~i~~~l~~Leae~q~L~~~E~qry~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~~~~~~~yk~~y~~l~k~Y~~~~ 84 (119)
T 3etw_A 5 ASLVGELQALDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDAL 84 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Confidence 4555666666666666655433322 1234444444555555553 678889
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhh
Q 007195 582 KALHEALMRQEDLLAYIDRQEEAK 605 (613)
Q Consensus 582 KaL~~al~kQ~El~ayie~~k~~k 605 (613)
|.|++-+.+|++++.+.|+-|.-+
T Consensus 85 keLd~~ik~qekiIdnFE~ik~lr 108 (119)
T 3etw_A 85 KKLEAEMEQQKAVISDFEKIQALR 108 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999877543
No 46
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=28.15 E-value=36 Score=31.24 Aligned_cols=75 Identities=15% Similarity=0.094 Sum_probs=41.8
Q ss_pred ccchhhhhhhcccCCCCCCCccccccccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHH
Q 007195 50 ASTKFKHSLKKKSSRRKSDGRVSSVSIEDVRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMW 129 (613)
Q Consensus 50 ~s~~~~~s~~k~~~~r~~~~~v~s~~ied~~d~~E~~al~efR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l 129 (613)
...++++.|+.|| .+..+..-.++++.+++...+...++..+.. ..+.......-+.+||..++|+.+.+...+
T Consensus 83 G~~~I~~eL~~KG----I~~~~I~~al~~~~~de~e~a~~l~~Kk~~~--~~~~~~~~k~K~~~~L~rrGF~~~~I~~~l 156 (162)
T 3dfg_A 83 GPLHIRAELGTHG----LDSDAVSAAMATFEGDWTENALDLIRRRFGE--DGPVDLAQRRKAADLLARRGFDGNSIRLAT 156 (162)
T ss_dssp CHHHHHHHHHHTT----CCHHHHHHHHTTCCSCHHHHHHHHHHHHHCT--TCCCSHHHHHHHHHHHHHTTCCHHHHHHHT
T ss_pred cHHHHHHHHHHcC----CCHHHHHHHHHhCcHhHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 4457888898888 4444433334444332333344444443321 112111222468899999999999877665
Q ss_pred H
Q 007195 130 A 130 (613)
Q Consensus 130 ~ 130 (613)
.
T Consensus 157 ~ 157 (162)
T 3dfg_A 157 R 157 (162)
T ss_dssp T
T ss_pred h
Confidence 3
No 47
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=27.96 E-value=73 Score=27.09 Aligned_cols=57 Identities=21% Similarity=0.292 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHH--------------HHHHHhcCCCCCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007195 530 LLSSVTKRLSELE--------------EKVDTLQAKPSEM--PYEKEELLHAAVCRVDALEAELIATKKALHEA 587 (613)
Q Consensus 530 ~~~~~~kRl~eLE--------------ekv~~L~~KP~~m--P~EKEe~L~aa~~RvdalE~eL~~TKKaL~~a 587 (613)
.-..+.+.|.+|+ .+..+....|. | |.--|.-|+.+-.+|+.|++||-+=...|.++
T Consensus 16 RkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~-~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~ 88 (98)
T 2ke4_A 16 QRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQ-MGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEA 88 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGG-GCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666554 44556666665 6 77779999999999999999999988888877
No 48
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=27.29 E-value=1.4e+02 Score=22.43 Aligned_cols=38 Identities=18% Similarity=0.084 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 007195 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (613)
Q Consensus 86 ~al~efR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~~ 132 (613)
..|++|++.= +.|.+.-++-|++.++|+++|+..|-..
T Consensus 11 ~~l~~L~~MG---------F~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 11 VQLEQLRSMG---------FLNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHHHT---------CCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHcC---------CCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4456666432 3444456899999999999999887653
No 49
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=25.82 E-value=33 Score=33.24 Aligned_cols=72 Identities=7% Similarity=0.009 Sum_probs=41.0
Q ss_pred ccchhhhhhhcccCCCCCCCccccccccCCCCHHHHH-HHHHHHHHHHhCCCCCCCCCc---HHHHHHHHHHcCCCHHHH
Q 007195 50 ASTKFKHSLKKKSSRRKSDGRVSSVSIEDVRDVEELQ-AVDAFRQSLIMDELLPERHDD---YHMMLRFLKARKFDIDKA 125 (613)
Q Consensus 50 ~s~~~~~s~~k~~~~r~~~~~v~s~~ied~~d~~E~~-al~efR~~L~~~~~Lp~~~dD---~~~LLRFLrArkfDvekA 125 (613)
...+++..|+.|| .+..+..-.++++.++++.+ +....+..+.... ..++ ..-+.|||..++|+.+.+
T Consensus 128 G~~~I~~eL~~KG----I~~~~I~~al~~~~~~~e~e~a~~l~~Kk~~~~~----~~~~~~~k~K~~~~L~rrGFs~~~I 199 (221)
T 3d5l_A 128 GPGIIRQHLRQKG----IGESDIDDALTQFTPEVQAELAKKLALKLFRRYR----NQPERRREQKVQQGLTTKGFSSSVY 199 (221)
T ss_dssp CHHHHHHHHHHTT----CCHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHTT----TSCHHHHHHHHHHHHHHTTCCHHHH
T ss_pred cHHHHHHHHHHcC----CCHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhcc----CCChHHHHHHHHHHHHhCCCCHHHH
Confidence 4556778888887 34433333344553333333 3333344433211 1222 357899999999999988
Q ss_pred HHHH
Q 007195 126 KHMW 129 (613)
Q Consensus 126 ~~~l 129 (613)
...+
T Consensus 200 ~~vl 203 (221)
T 3d5l_A 200 EMIK 203 (221)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 6655
No 50
>3hf0_A GCN4-PLI SIDE chain sequence on AN (alpha-alpha- beta-alpha-beta-alpha-beta) backbone...; helix bundle, foldamer, alpha/beta-peptide, coiled coil; HET: BIL XCP B3Y XPC 16A; 2.10A {Synthetic}
Probab=25.73 E-value=1.3e+02 Score=19.90 Aligned_cols=28 Identities=29% Similarity=0.271 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007195 559 KEELLHAAVCRVDALEAELIATKKALHE 586 (613)
Q Consensus 559 KEe~L~aa~~RvdalE~eL~~TKKaL~~ 586 (613)
.|.-|.+.+....-.|.||...|..|.+
T Consensus 6 ~e~kl~e~l~kl~h~e~el~r~k~ll~e 33 (34)
T 3hf0_A 6 XEXKLXEXLXKLXHXEXELXRXKXLLXE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 4566788888999999999999988865
No 51
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=25.72 E-value=81 Score=24.23 Aligned_cols=43 Identities=26% Similarity=0.179 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCh----hHHHHHHHHHHHHHHHHHHHH
Q 007195 536 KRLSELEEKVDTLQAKPSEMPY----EKEELLHAAVCRVDALEAELI 578 (613)
Q Consensus 536 kRl~eLEekv~~L~~KP~~mP~----EKEe~L~aa~~RvdalE~eL~ 578 (613)
+|+.+|-+-++.|..--|.+|. -|=+.|..|+.=|..|+.-|.
T Consensus 12 ~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 12 NRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999988777774 588999999999999987664
No 52
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=25.46 E-value=86 Score=25.23 Aligned_cols=47 Identities=11% Similarity=0.233 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCC---hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007195 536 KRLSELEEKVDTLQAKPSEMP---YEKEELLHAAVCRVDALEAELIATKK 582 (613)
Q Consensus 536 kRl~eLEekv~~L~~KP~~mP---~EKEe~L~aa~~RvdalE~eL~~TKK 582 (613)
+|...|=+.+..|..--|.+| ..|-.+|..|+.=|+.|+.++..-+.
T Consensus 22 ~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~ 71 (80)
T 1hlo_A 22 KRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666655434333 47999999999999999987765443
No 53
>2z5i_I TM, tropomyosin alpha-1 chain and general control protein GCN4; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Oryctolagus cuniculus} PDB: 2z5h_I 2g9j_A 1tmz_A
Probab=24.52 E-value=51 Score=23.56 Aligned_cols=20 Identities=35% Similarity=0.395 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 007195 564 HAAVCRVDALEAELIATKKA 583 (613)
Q Consensus 564 ~aa~~RvdalE~eL~~TKKa 583 (613)
.+|++|.+.+|+++-.++|.
T Consensus 20 d~A~drAe~~E~~~k~~~~~ 39 (40)
T 2z5i_I 20 ENALDRAEQLENEVARLKKL 39 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHhhcc
Confidence 37899999999999998873
No 54
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=24.50 E-value=1.5e+02 Score=22.62 Aligned_cols=26 Identities=12% Similarity=0.028 Sum_probs=21.2
Q ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHH
Q 007195 106 DDYHMMLRFLKARKFDIDKAKHMWAE 131 (613)
Q Consensus 106 dD~~~LLRFLrArkfDvekA~~~l~~ 131 (613)
.|.+..++=|++.++|+++|++.|-.
T Consensus 30 ~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 30 FDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp CCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 34456799999999999999988754
No 55
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=24.13 E-value=1.3e+02 Score=25.41 Aligned_cols=56 Identities=11% Similarity=0.020 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 007195 534 VTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQED 593 (613)
Q Consensus 534 ~~kRl~eLEekv~~L~~KP~~mP~EKEe~L~aa~~RvdalE~eL~~TKKaL~~al~kQ~E 593 (613)
.+.|...+|.++..+..+-. .+|+=+.+=-.|+..||.||+.+...|.++..+-++
T Consensus 21 a~drae~~e~~~k~~e~~~~----~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee 76 (101)
T 3u1c_A 21 ALDRAEQAEADKKAAEERSK----QLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLF 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666655544322 366666666788999999999999888888766544
No 56
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=23.41 E-value=1.4e+02 Score=24.10 Aligned_cols=38 Identities=21% Similarity=0.135 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 007195 85 LQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (613)
Q Consensus 85 ~~al~efR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~ 131 (613)
+..|++|++.= +.|.+..++=|++.++|+++|++.|-.
T Consensus 30 e~qi~qL~eMG---------F~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 30 QQELEELKALG---------FANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp HHHHHHHHHHT---------CCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHHcC---------CCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 34566666532 234456799999999999999887753
No 57
>1pl5_A Regulatory protein SIR4; parallel coiled coil homodimer, DNA binding protein/transcription complex; 2.50A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=23.01 E-value=66 Score=27.76 Aligned_cols=40 Identities=30% Similarity=0.380 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 007195 568 CRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEAKFR 607 (613)
Q Consensus 568 ~RvdalE~eL~~TKKaL~~al~kQ~El~ayie~~k~~k~~ 607 (613)
-||-+|.-||--|||.|+.|-..--|--|-|.+.-++.|+
T Consensus 95 iritslqgdltftkkclenarsqisekdakinklmekdfq 134 (142)
T 1pl5_A 95 IRITSLQGDLTFTKKCLENARSQISEKDAKINKLMEKDFQ 134 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC----
T ss_pred eeeeeeccchhhHHHHHHHHHhhhhhhhHHHHHHHHHhhh
Confidence 4899999999999999999988777766666665555544
No 58
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=22.79 E-value=1.7e+02 Score=23.11 Aligned_cols=38 Identities=16% Similarity=0.101 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 007195 85 LQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (613)
Q Consensus 85 ~~al~efR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l~~ 131 (613)
..+|.+|++.= +.|.+.-++-|++.+.|+++|++.|.+
T Consensus 20 ~~ql~qL~~MG---------F~d~~an~~AL~at~Gnve~Ave~L~~ 57 (67)
T 2dna_A 20 SKEMECLQAMG---------FVNYNANLQALIATDGDTNAAIYKLKS 57 (67)
T ss_dssp HHHHHHHHHHT---------CCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHcC---------CCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 45666666432 344456699999999999999887754
No 59
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=22.40 E-value=1.1e+02 Score=25.93 Aligned_cols=45 Identities=18% Similarity=0.225 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCChh----HHHHHHHHHHHHHHHHHHHHH
Q 007195 535 TKRLSELEEKVDTLQAKPSEMPYE----KEELLHAAVCRVDALEAELIA 579 (613)
Q Consensus 535 ~kRl~eLEekv~~L~~KP~~mP~E----KEe~L~aa~~RvdalE~eL~~ 579 (613)
..||..|-+-++.|...-+.+|++ |=|.|..|++-|..|..-|..
T Consensus 34 r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 34 MSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 469999999999999998888887 889999999999999877754
No 60
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=22.32 E-value=1.4e+02 Score=21.47 Aligned_cols=35 Identities=29% Similarity=0.428 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 007195 558 EKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLLA 596 (613)
Q Consensus 558 EKEe~L~aa~~RvdalE~eL~~TKKaL~~al~kQ~El~a 596 (613)
.|||||+. ++||| +|.++|.+=+-+-=.||.||-+
T Consensus 3 tk~~l~qk-I~kVd---rEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 3 SKEELIQN-MDRVD---REITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp SSSHHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 47787763 55555 7899998888888888888765
No 61
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=21.44 E-value=3.2e+02 Score=32.43 Aligned_cols=61 Identities=21% Similarity=0.248 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHhc------CCCCCCChhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 007195 534 VTKRLSELEEKVDTLQ------AKPSEMPYEK--EELLHAAVCRVDALEAELIATKKALHEALMRQEDLLAY 597 (613)
Q Consensus 534 ~~kRl~eLEekv~~L~------~KP~~mP~EK--Ee~L~aa~~RvdalE~eL~~TKKaL~~al~kQ~El~ay 597 (613)
..+--++||..+..|+ ++|+-+|++- -+-|+.++.+...+|+| .-.+|.+.+.||+.|..-
T Consensus 819 r~~ek~~Le~l~~~iqtklrl~~r~~~~p~~gl~~~dL~~~W~~Le~ae~e---Re~~L~~el~Rqe~L~~L 887 (1010)
T 1g8x_A 819 KGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQE---HAEALRIELKRQKKIAVL 887 (1010)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCCCCCCTTCSHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3444455555444444 5577778751 34588888777666666 447999999999888643
No 62
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=21.35 E-value=16 Score=33.52 Aligned_cols=74 Identities=15% Similarity=0.240 Sum_probs=39.9
Q ss_pred ccchhhhhhhcccCCCCCCCccccccccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHH
Q 007195 50 ASTKFKHSLKKKSSRRKSDGRVSSVSIEDVRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMW 129 (613)
Q Consensus 50 ~s~~~~~s~~k~~~~r~~~~~v~s~~ied~~d~~E~~al~efR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l 129 (613)
...++++.|+.|| .+..+..-.++++.+++...+....+..+.. ..|.......-+.|||..++|+.+.+...+
T Consensus 81 G~~~I~~eL~~KG----I~~~~i~~al~~~~~d~~~~a~~l~~kk~~~--~~~~~~~~~~K~~~~L~rrGF~~~~i~~~l 154 (159)
T 3c1d_A 81 GPARIRQELNQKG----ISREATEKAMREADIDWAALARDQATRKYGE--PLPTVFSEKVKIQRFLLYRGYLMEDIQDIW 154 (159)
T ss_dssp CHHHHHHHHHHTT----CCHHHHHHHHHHHCCCHHHHHHHHHHHHHCS--SCCCSHHHHHHHHHHHHHTTCCHHHHTTCC
T ss_pred cHHHHHHHHHHcC----CCHHHHHHHHHHcCHhHHHHHHHHHHHHcCC--CCCCCHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 4567888999888 3333322222222222223344433434321 122222233578999999999998775544
No 63
>1nyh_A Regulatory protein SIR4; coiled-coil, transcription regulation, repressor, transcript repressor; 3.10A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=20.93 E-value=77 Score=27.96 Aligned_cols=40 Identities=30% Similarity=0.380 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 007195 568 CRVDALEAELIATKKALHEALMRQEDLLAYIDRQEEAKFR 607 (613)
Q Consensus 568 ~RvdalE~eL~~TKKaL~~al~kQ~El~ayie~~k~~k~~ 607 (613)
-||-+|.-+|--|||.|+.|-..--|--|-|.+.-++.|+
T Consensus 119 iritslqgdltftkkclenarsqisekdakinklmekdfq 158 (166)
T 1nyh_A 119 IRITSLQGDLTFTKKCLENARSQISEKDAKINKLMEKDFQ 158 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC----
T ss_pred eeeeeeccchhhHHHHHHHHHhhhhhhhHHHHHHHHHhhc
Confidence 4899999999999999999988777777777665555544
No 64
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=20.77 E-value=3.2e+02 Score=22.22 Aligned_cols=64 Identities=22% Similarity=0.290 Sum_probs=38.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 007195 527 EVDLLSSVTKRLSELEEKVDTLQAKPSEMPYEKEELLHAAVCRVDALEAELIATKKALHEALMRQEDLL 595 (613)
Q Consensus 527 ~~~~~~~~~kRl~eLEekv~~L~~KP~~mP~EKEe~L~aa~~RvdalE~eL~~TKKaL~~al~kQ~El~ 595 (613)
+.-++..+=.+|..||.++..|..+=+. |. +-.....++..|=++|...+..|.++..|=+||-
T Consensus 20 eqrEle~le~~Ie~LE~~i~~le~~lad-p~----~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe 83 (89)
T 2lw1_A 20 LQRELEQLPQLLEDLEAKLEALQTQVAD-AS----FFSQPHEQTQKVLADMAAAEQELEQAFERWEYLE 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS-TT----GGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC-cc----cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445778888899999998888754210 10 0001123555566666666667777777777663
No 65
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.53 E-value=1.8e+02 Score=22.64 Aligned_cols=35 Identities=11% Similarity=0.149 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHH
Q 007195 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMW 129 (613)
Q Consensus 86 ~al~efR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~~~l 129 (613)
+.|.+|...-. .+......||.+.+||++.|+..+
T Consensus 19 ~~i~qF~~iTg---------~~~~~A~~~Le~~~WdLe~Al~~f 53 (66)
T 2dzl_A 19 VMINQFVLAAG---------CAADQAKQLLQAAHWQFETALSTF 53 (66)
T ss_dssp HHHHHHHHHHC---------CCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHHHHcC---------CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 67888886541 123478999999999999998776
No 66
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=20.34 E-value=2.9e+02 Score=22.22 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=20.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHH
Q 007195 556 PYEKEELLHAAVCRVDALEAELIA 579 (613)
Q Consensus 556 P~EKEe~L~aa~~RvdalE~eL~~ 579 (613)
=.+|-.+|..|++=|+.|+.+...
T Consensus 38 k~~Ka~IL~~Ai~YI~~Lq~~~~~ 61 (82)
T 1am9_A 38 KLNKSAVLRKAIDYIRFLQHSNQK 61 (82)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 357999999999999999987764
Done!