Query 007201
Match_columns 613
No_of_seqs 189 out of 2189
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 19:44:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007201.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007201hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xut_A Proton/peptide symporte 100.0 1.3E-30 4.4E-35 288.1 25.6 485 44-597 10-512 (524)
2 4aps_A DI-OR tripeptide H+ sym 100.0 7.9E-30 2.7E-34 279.3 31.6 444 42-593 9-477 (491)
3 1pw4_A Glycerol-3-phosphate tr 99.9 2E-25 6.8E-30 240.8 25.9 401 44-590 26-436 (451)
4 3o7q_A L-fucose-proton symport 99.9 8.8E-24 3E-28 227.2 32.1 360 42-551 22-408 (438)
5 4gc0_A D-xylose-proton symport 99.9 3.6E-25 1.2E-29 242.1 20.9 418 81-606 54-481 (491)
6 2gfp_A EMRD, multidrug resista 99.9 1.6E-21 5.3E-26 205.7 18.4 166 49-245 3-168 (375)
7 2cfq_A Lactose permease; trans 99.9 1.2E-21 4E-26 210.7 11.2 392 46-591 7-403 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.5 1.2E-13 4.1E-18 148.3 17.3 179 45-251 251-433 (451)
9 3o7q_A L-fucose-proton symport 99.4 2.8E-12 9.4E-17 137.2 17.5 168 46-246 258-427 (438)
10 2cfq_A Lactose permease; trans 99.4 3.6E-12 1.2E-16 136.5 14.1 178 46-253 220-401 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.1 1.2E-10 4E-15 126.8 12.0 185 48-254 285-474 (491)
12 4gc0_A D-xylose-proton symport 99.1 7.5E-10 2.5E-14 120.3 16.9 186 46-257 276-468 (491)
13 2gfp_A EMRD, multidrug resista 98.8 8.4E-10 2.9E-14 115.5 3.6 164 46-238 199-363 (375)
14 2xut_A Proton/peptide symporte 98.0 6.4E-06 2.2E-10 90.0 8.2 137 404-586 57-197 (524)
No 1
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=1.3e-30 Score=288.14 Aligned_cols=485 Identities=24% Similarity=0.347 Sum_probs=291.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHH
Q 007201 44 TWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVG------QNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCA 117 (613)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg------~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~ 117 (613)
++|.++.+++..++..+.+|++..+++.|+++++| ++..+++++.+.+.++..++.+++|+++||++|||+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~ 89 (524)
T 2xut_A 10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTIL 89 (524)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 44667778888999999999999999999999999 999999999999999999999999999999339999999
Q ss_pred HHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccc
Q 007201 118 IFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGH 197 (613)
Q Consensus 118 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~ 197 (613)
++.++..++.+++.++ + .+.+.++++|++.|++.+...+...++++|++|+++
T Consensus 90 ~~~~~~~~~~~~~~~~---~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~----- 142 (524)
T 2xut_A 90 WLSLIYCVGHAFLAIF---E-------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN----- 142 (524)
T ss_dssp HHHHHHHHHHHHHHHT---S-------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT-----
T ss_pred HHHHHHHHHHHHHHHh---c-------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc-----
Confidence 9999999988888876 2 136778899999999999999999999999999888
Q ss_pred hhhhH---HHHHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHcCCcccccCCCCChhhHHHHHHHH
Q 007201 198 SKIAF---FSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTPRYRHFKPTGNPLSRICQVVVA 274 (613)
Q Consensus 198 ~r~~~---~~~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (613)
|++. +++++.+.++|..++|.+++++.+..||+..|++.++..+++.+.++...++.++++|.+++..+..+.+..
T Consensus 143 -r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (524)
T 2xut_A 143 -KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRS 221 (524)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC---------------
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHH
Confidence 7544 455999999999999999999988889999999888776666655554444333322322222121122111
Q ss_pred HHhhccccccCCcccchhhhcccccccccCCcccccccccchhhhhhhhhc-cCCCCCCCCCCCCCCCCCCCCcc-----
Q 007201 275 ATRKWKVQISDDDHDLLFYERDGIKQTSQNGARNILHTQGFKFLDKAAVIT-RKSDNDKNNGGDGENIDMRNPWV----- 348 (613)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~----- 348 (613)
..+++....++ ... ..+.. .... ......+......+....+.. ... +++.+.+|+
T Consensus 222 ~~~~~~~~~~~--~~~-~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~ 283 (524)
T 2xut_A 222 ALLTKVEGKGN--IGL-VLALI-GGVS---AAYALVNIPTLGIVAGLCCAMVLVM-----------GFVGAGASLQLERA 283 (524)
T ss_dssp -----CTTHHH--HHH-HHHHH-HHHH---HHHTGGGTTTTCSSHHHHHHHHHHH-----------HHHHTGGGTHHHHS
T ss_pred HHhhhhcccCc--cch-hhhhh-hhhh---hhhhhcccchhhhhhhhhhhhhhhh-----------cccccchhhHHhhh
Confidence 22211100000 000 00000 0000 000000000000000000000 000 000001110
Q ss_pred --ccchhhhHHHHHHHHHHHHHHHhHHHhhhhhcccceeeeehhhcccCccccccCccccccchhHHHHHHHHhhhhhHH
Q 007201 349 --LCTVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLD 426 (613)
Q Consensus 349 --~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~~ 426 (613)
.......+++|+......++.....++..+.+..+.+..+...++... + .+.+.+..++.+..++..++.+++..
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (524)
T 2xut_A 284 RKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ--W-FEPAMMQALNPLLVMLLIPFNNFVLY 360 (524)
T ss_dssp CCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS--S-SCHHHHHTTSGGGHHHHGGGTTTC--
T ss_pred hccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe--e-ecHHHHHHHHHHHHHHhHHHHHhhhH
Confidence 000011223344444555555566666666666554444333333221 1 24566777788888899999998877
Q ss_pred HhhhhhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCccchhHHHHHHHHHHHHHHHhhh
Q 007201 427 PLVERLTRKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYVLIGASEVFMY 506 (613)
Q Consensus 427 ~l~~r~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~~~~~~~ 506 (613)
|..+|++++. +..+.+.+|+++.+++++++.+......+ ....+.+++++.+++.+++++...
T Consensus 361 ~~~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~l~g~~~~~~~ 423 (524)
T 2xut_A 361 PAIERMGVKL-----TALRKMGAGIAITGLSWIVVGTIQLMMDG------------GSALSIFWQILPYALLTFGEVLVS 423 (524)
T ss_dssp ---------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTT------------TCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCC-----ChHHHHHHHHHHHHHHHHHHHHHHHHhcC------------CCCcCHHHHHHHHHHHHHHHHHHH
Confidence 7667765544 55667778888888887776544211000 112355677888999999999999
Q ss_pred hhhhhhhhccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCC-CCCcchhHHHHHHHHHHHHHHHHHHH
Q 007201 507 VGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLVTIVMKISTRPGWIPG-NLNKGHLDRFYFLLAALTTADLFIYI 585 (613)
Q Consensus 507 p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~i~~~l~~~i~~~~~~~~~~~~-~~~~~~~~~~f~~~a~~~~~~~~~~~ 585 (613)
|..++++.+.+|++.||+++|+++....+|+.+++.+.+.+.+.++ .+|.+. +.+. ....|++.++++++++++++
T Consensus 424 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 500 (524)
T 2xut_A 424 ATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV-TEQIVQTGMSV--TAFQMFFFAGFAILAAIVFA 500 (524)
T ss_dssp HHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH-HHHHHHHHSCH--HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc-ccccccccccc--cccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887653210 112110 0111 12237777888888887777
Q ss_pred Hhhhhccccccc
Q 007201 586 ICARWYKYIKFE 597 (613)
Q Consensus 586 ~~~~~~~~~~~~ 597 (613)
++.+++++++.+
T Consensus 501 ~~~~~~~~~~~~ 512 (524)
T 2xut_A 501 LYARSYQMQDHY 512 (524)
T ss_dssp ------------
T ss_pred HHHHHhccchhh
Confidence 777666554443
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.97 E-value=7.9e-30 Score=279.30 Aligned_cols=444 Identities=16% Similarity=0.249 Sum_probs=296.6
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCChhhHHHHHHHHHHHHHHHHHHHHHHhhh-ccCchHH
Q 007201 42 TGTWIAGILILVNQGLATLAFFGVGVNLVLFLTRV-----VGQNNADAANNVSKWTGTVYIFSLLGAFLSDS-YWGRYKT 115 (613)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~-----lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr-~~Grr~~ 115 (613)
++++|.++.+++..++..+.+|++..+++.|+++. +|.+..+.+++.+.+.++..++++++|+++|| + |||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~ 87 (491)
T 4aps_A 9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPA 87 (491)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHH
Confidence 44567888999999999999999999999999998 99999999999999999999999999999999 7 99999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccc
Q 007201 116 CAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKE 195 (613)
Q Consensus 116 i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~ 195 (613)
+.++.++..++.++++++ + +.+.++++|++.|++.|...+...++++|++|+++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~---~--------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~-- 142 (491)
T 4aps_A 88 VFWGGVLIMLGHIVLALP---F--------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR-- 142 (491)
T ss_dssp HHHHHHHHHHHHHHHHSC---C--------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT--
T ss_pred HHHHHHHHHHHHHHHHHh---h--------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc--
Confidence 999999999998888775 2 366788999999999999999999999999998762
Q ss_pred cchhhhHHHHHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHcCCccccc---CCCCC-hhhHHHHH
Q 007201 196 GHSKIAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTPRYRHF---KPTGN-PLSRICQV 271 (613)
Q Consensus 196 ~~~r~~~~~~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~ 271 (613)
.|++++++++.+.++|..++|.+++++.+..||++.|++.++..+++.+.++...++...+ ++... ...+..+.
T Consensus 143 --~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (491)
T 4aps_A 143 --RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPL 220 (491)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHH
T ss_pred --cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHH
Confidence 2677888899999999999999999999889999999998777666665555443322111 11111 11111111
Q ss_pred HHH--------------HHhhccccccCCcccchhhhcccccccccCCcccccccccchhhhhhhhhccCCCCCCCCCCC
Q 007201 272 VVA--------------ATRKWKVQISDDDHDLLFYERDGIKQTSQNGARNILHTQGFKFLDKAAVITRKSDNDKNNGGD 337 (613)
Q Consensus 272 ~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~ 337 (613)
... ....... ..+ +. ..+.. .............
T Consensus 221 ~~~~g~~l~~~~~~~~~~~~~~~~--~~~--~~----------------~~~~~--~~~~~~~~~~~~~----------- 267 (491)
T 4aps_A 221 LVKVSLAVAGFIAIIVVMNLVGWN--SLP--AY----------------INLLT--IVAIAIPVFYFAW----------- 267 (491)
T ss_dssp HHHCCCCCHHHHHHHHHHHHHSSC--CTT--HH----------------HHHHH--HHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHHHHHHhccCc--ccc--cc----------------hhhhh--HHHHHHHHHHHHH-----------
Confidence 000 0000000 000 00 00000 0000000000000
Q ss_pred CCCCCCCCCccccchhhhHHHHHHHHHHHHHHHhHHHhhhhhcccceeeeehhh-cccCccccccCccccccchhHHHHH
Q 007201 338 GENIDMRNPWVLCTVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAA-MKTNISTFHIPPASMSSFDILSVAA 416 (613)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~ 416 (613)
.|+... ....++++......+++....++..+.+..+.+..+... .+.+ ....+.+..++.+..++
T Consensus 268 --------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 334 (491)
T 4aps_A 268 --------MISSVK-VTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS----WFPVSWFQSLNPLFIML 334 (491)
T ss_dssp --------HC-------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS----SSCSGGGTTHHHHHHHH
T ss_pred --------Hhhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC----ccCHHHHhccchHHHHH
Confidence 000000 011223333344455556666666666665543322211 1111 14567778888888888
Q ss_pred HHHhhhhhHHHhhhhhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCccchhHHHHHHHH
Q 007201 417 FIFIYRRVLDPLVERLTRKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYV 496 (613)
Q Consensus 417 ~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~ 496 (613)
..++.+++. +|++||+ .....++.+|..+.+++++++.+....... ....+.++.++.++
T Consensus 335 ~~~~~~~l~----~r~~~r~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~ 394 (491)
T 4aps_A 335 YTPFFAWLW----TAWKKNQ----PSSPTKFAVGLMFAGLSFLLMAIPGALYGT------------SGKVSPLWLVGSWA 394 (491)
T ss_dssp HHHHHHHHH----HHTTTC-------CHHHHHHHHHHHHHHHTTTHHHHHHCCC------------CTTCCTHHHHHHHH
T ss_pred HHHHHHHHH----HHHhccC----CCchHHHHHHHHHHHHHHHHHHHHHHhcCC------------CCCccHHHHHHHHH
Confidence 888888764 5555443 245567778888888888777665422100 12335667788889
Q ss_pred HHHHHHHhhhhhhhhhhhccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCcchhHHHHHHHHHH
Q 007201 497 LIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLVTIVMKISTRPGWIPGNLNKGHLDRFYFLLAAL 576 (613)
Q Consensus 497 l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~f~~~a~~ 576 (613)
+.+++.+...|..++++.+.+|++.||+++|+.+....+|+.+++.+.+.+.+ .++...|++.+++
T Consensus 395 l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~--------------~~~~~~~~~~~~~ 460 (491)
T 4aps_A 395 LVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA--------------KSEVAYFSYFGLG 460 (491)
T ss_dssp HHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG--------------SSTTHHHHHTHHH
T ss_pred HHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------ccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988765542 1234567888888
Q ss_pred HHHHHHHHHHhhhhccc
Q 007201 577 TTADLFIYIICARWYKY 593 (613)
Q Consensus 577 ~~~~~~~~~~~~~~~~~ 593 (613)
++++.++.+++.++.++
T Consensus 461 ~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 461 SVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp HHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88887777776665544
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.94 E-value=2e-25 Score=240.80 Aligned_cols=401 Identities=8% Similarity=-0.022 Sum_probs=257.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHH
Q 007201 44 TWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIF 123 (613)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~ 123 (613)
+++.++.+++..+......+.+...++.+. +++ .++.+.+++.+++.++..++.+++|+++||+ |||+++.++.++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~ 102 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILA 102 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHH
Confidence 456667777777777777666666666555 466 9999999999999999999999999999996 9999999999999
Q ss_pred HHHHHHHHh----hhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchh
Q 007201 124 VIGLVSLSV----SSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSK 199 (613)
Q Consensus 124 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r 199 (613)
.++.+++++ + + +.+.++++|++.|++.+...+...++++|.+|+++ |
T Consensus 103 ~~~~~~~~~~~~~~---~--------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r 153 (451)
T 1pw4_A 103 AAVMLFMGFVPWAT---S--------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------R 153 (451)
T ss_dssp HHHHHHHHHCHHHH---S--------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------H
T ss_pred HHHHHHHHhhhhcc---c--------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------h
Confidence 999988888 5 2 25678899999999999999999999999999888 9
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHhccccc-hhHHHHHHHHHHHHHHHHHHHcCCcccccCCCCChhhHHHHHHHHHHhh
Q 007201 200 IAFFSYFYLALNLGSLFSNTILGYFEDEGM-WALGFWASAGSATMALILFLIGTPRYRHFKPTGNPLSRICQVVVAATRK 278 (613)
Q Consensus 200 ~~~~~~~~~~~~iG~~~gp~l~g~l~~~~g-~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (613)
++++++.+.+.++|..++|.+++++.+..| |++.|++.++..++..+..+...++.+......+
T Consensus 154 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 218 (451)
T 1pw4_A 154 GGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPP--------------- 218 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCS---------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCC---------------
Confidence 999999999999999999999999888888 9999998887766555544444333211110000
Q ss_pred ccccccCCcccchhhhcccccccccCCcccccccccchhhhhhhhhccCCCCCCCCCCCCCCCCCCCCccccchh-hhHH
Q 007201 279 WKVQISDDDHDLLFYERDGIKQTSQNGARNILHTQGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVT-QVEE 357 (613)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 357 (613)
.+ +. + ++.. ++ .. . +++...+++....+ ..++
T Consensus 219 ------~~--~~---~----~~~~----~~-----------~~-----~------------~~~~~~~~~~~~~~~~~~~ 251 (451)
T 1pw4_A 219 ------IE--EY---K----NDYP----DD-----------YN-----E------------KAEQELTAKQIFMQYVLPN 251 (451)
T ss_dssp ------CT--TT---C----CC---------------------------------------------CCTHHHHHHTSSC
T ss_pred ------hh--hh---c----cccc----cc-----------ch-----h------------hhhcccccccchHHHHHcC
Confidence 00 00 0 0000 00 00 0 00000011100000 0011
Q ss_pred HHHHHHHHHHHHHhHHHhhhhhcccceeeeehhhcccCccccccCccccccchhHHHHHHHHhhhhhHHHhhhhh--ccC
Q 007201 358 VKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLDPLVERL--TRK 435 (613)
Q Consensus 358 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~~~l~~r~--~~~ 435 (613)
++.....+..+.....+.......+.++ ...++......+.+.....+..++..++.+++ .+|+ ++|
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l----~~~~~~~~~ 320 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYL-------KEVKHFALDKSSWAYFLYEYAGIPGTLLCGWM----SDKVFRGNR 320 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHB-------TTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHTSTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhcCCc
Confidence 2222222222222222333222222111 11110001122344555556666666666665 4454 332
Q ss_pred CCCCCCChhHHHHHHHHHHH-HHHHHHHHHHhhhhhhccccCCCCCCCCccchhHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 007201 436 SGTRGFTELQRMGVGLVIAI-MAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYVLIGASEVFMYVGQLEFFN 514 (613)
Q Consensus 436 ~~~~~~~~~~~~~~G~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~~~~~~~p~~~~~~~ 514 (613)
. .+.++..+.. ++++++.+. ...+.+......++.|++.....+..+.++.
T Consensus 321 ~---------~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 372 (451)
T 1pw4_A 321 G---------ATGVFFMTLVTIATIVYWMN-------------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHAL 372 (451)
T ss_dssp H---------HHHHHHHHHHHHHHHHTTSC-------------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred h---------hHHHHHHHHHHHHHHHHHHh-------------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 2 3444444443 444444221 1123445566677788888888888889999
Q ss_pred ccCCchhHHHHHHHHHHHHhH-HHHHHHHHHHHHhhhcCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhh
Q 007201 515 GQAPDGLKSFGSALCMTSISL-GNYVSSLLVTIVMKISTRPGWIPGNLNKGHLDRFYFLLAALTTADLFIYIICARW 590 (613)
Q Consensus 515 ~~~P~~~rg~~~g~~~~~~~l-g~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~ 590 (613)
+.+|++.||+++|+.+....+ |..+++.+.+.+.+.. ++...|++.+++.+++++..++..++
T Consensus 373 ~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~-------------g~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 373 ELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-------------GWDGGFMVMIGGSILAVILLIVVMIG 436 (451)
T ss_dssp HTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-------------CSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------CcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999 9999999999876532 24567888888777777766655443
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.93 E-value=8.8e-24 Score=227.18 Aligned_cols=360 Identities=11% Similarity=0.039 Sum_probs=233.4
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHH
Q 007201 42 TGTWIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQA 121 (613)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~ 121 (613)
+++++.++.+++..+...+..+.....+| ++.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||++++++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~ 99 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF 99 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence 34456666666666677666665555555 46788999999999999999999999999999999996 99999999999
Q ss_pred HHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhh
Q 007201 122 IFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIA 201 (613)
Q Consensus 122 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~ 201 (613)
+..++.+++...... .+.+.++++|++.|++.|...+...++++|.+|+++ |++
T Consensus 100 ~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~ 153 (438)
T 3o7q_A 100 LYALGAALFWPAAEI--------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHF 153 (438)
T ss_dssp HHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHH
T ss_pred HHHHHHHHHHhcccc--------------------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHH
Confidence 999998888332111 237889999999999999999999999999999998 999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhc-cccc-------------------------hhHHHHHHHHHHHHHHHHHHHcC-Cc
Q 007201 202 FFSYFYLALNLGSLFSNTILGYFE-DEGM-------------------------WALGFWASAGSATMALILFLIGT-PR 254 (613)
Q Consensus 202 ~~~~~~~~~~iG~~~gp~l~g~l~-~~~g-------------------------~~~~f~~~~~~~~i~~~~~~~~~-~~ 254 (613)
++++.+.+.++|..++|.+++++. +..+ |++.|++.+...++..+.++..+ ++
T Consensus 154 ~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~ 233 (438)
T 3o7q_A 154 RLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPA 233 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 999999999999999999999887 5444 89998777655554444433321 11
Q ss_pred ccccCCCCChhhHHHHHHHHHHhhccccccCCcccchhhhcccccccccCCcccccccccchhhhhhhhhccCCCCCCCC
Q 007201 255 YRHFKPTGNPLSRICQVVVAATRKWKVQISDDDHDLLFYERDGIKQTSQNGARNILHTQGFKFLDKAAVITRKSDNDKNN 334 (613)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 334 (613)
.+++++.++. + .+ . +.
T Consensus 234 ~~~~~~~~~~---------------------~-~~--------------------------~---~~------------- 249 (438)
T 3o7q_A 234 LQSDNHSDAK---------------------Q-GS--------------------------F---SA------------- 249 (438)
T ss_dssp CTTTCCCCSS---------------------T-TS--------------------------H---HH-------------
T ss_pred cccccccccc---------------------c-cc--------------------------h---hh-------------
Confidence 1100000000 0 00 0 00
Q ss_pred CCCCCCCCCCCCccccchhhhHHHHHHHHHHHHHHHhHHHhhhhhcccceeeeehhhcccCccccccCccccccchhHHH
Q 007201 335 GGDGENIDMRNPWVLCTVTQVEEVKCILRLLPIWLCTILYSVVFTQMASLFVEQGAAMKTNISTFHIPPASMSSFDILSV 414 (613)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 414 (613)
+++ +..++++.....+..+.....+.....+.+.++..+..+++ ....+.+..+..+..
T Consensus 250 -----------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~------~~~~~~~~~~~~~~~ 308 (438)
T 3o7q_A 250 -----------SLS----RLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMT------AGFAANYLTGTMVCF 308 (438)
T ss_dssp -----------HHH----HHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCC------HHHHHHHHHHHHHHH
T ss_pred -----------hHH----HHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcc------hhHHHHHHHHHHHHH
Confidence 000 00001111111122222222222222222221011100111 112234444445555
Q ss_pred HHHHHhhhhhHHHhhhhhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCccchhHHHHHH
Q 007201 415 AAFIFIYRRVLDPLVERLTRKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQ 494 (613)
Q Consensus 415 ~~~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~ 494 (613)
++..++.+++ .+|+++| +.+.++.++.+++++++.+.. +. +.+..
T Consensus 309 ~~~~~~~g~l----~~r~~~~---------~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~ 353 (438)
T 3o7q_A 309 FIGRFTGTWL----ISRFAPH---------KVLAAYALIAMALCLISAFAG---------------------GH-VGLIA 353 (438)
T ss_dssp HHHHHHHHHH----HHHSCHH---------HHHHHHHHHHHHHHHHHHHCC---------------------HH-HHHHH
T ss_pred HHHHHHHHHH----HHHhcch---------HHHHHHHHHHHHHHHHHHHcC---------------------Cc-HHHHH
Confidence 6666666665 4555433 255666666666665554321 11 23444
Q ss_pred HHHHHHHHHhhhhhhhhhhhccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhc
Q 007201 495 YVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLVTIVMKIS 551 (613)
Q Consensus 495 ~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~i~~~l~~~i~~~~ 551 (613)
.++.+++.+...|..+++..+..|++ ++.++++.. .+.+|+.++|.+.+.+.+..
T Consensus 354 ~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~ 408 (438)
T 3o7q_A 354 LTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAA 408 (438)
T ss_dssp HHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 57778888888899999989999977 889998877 67799999999999887654
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.93 E-value=3.6e-25 Score=242.10 Aligned_cols=418 Identities=14% Similarity=0.084 Sum_probs=226.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHH
Q 007201 81 NADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMA 160 (613)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (613)
..+.+++++++.++..++++++|+++||+ |||++++++.+++.++.++++++........ ...........+.+
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~-----~~~~~~~~~a~~~~ 127 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSIN-----PDNTVPVYLAGYVP 127 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSS-----SSSSCCGGGGGCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhc-----chhHHHHHHhhhHH
Confidence 34567888999999999999999999996 9999999999999999998886411000000 00000001134588
Q ss_pred HHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHHHHhHHHHHHHHHHHHhccc--------cchhH
Q 007201 161 LFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYLALNLGSLFSNTILGYFEDE--------GMWAL 232 (613)
Q Consensus 161 ~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~~~~iG~~~gp~l~g~l~~~--------~g~~~ 232 (613)
.++++|+++|+|.|+..+..+.+++|..|++. |++..++.+.+..+|..+++.++..+... .+|+.
T Consensus 128 ~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (491)
T 4gc0_A 128 EFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRY 201 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHH
Confidence 89999999999999999999999999999998 99999999999999999998887765432 24665
Q ss_pred HHHHHHHHHHHHHHHHHHcCCcccccCCCCChhhHHHHHHHHHHhhccccccCCcccchhhhcccccccccCCccccccc
Q 007201 233 GFWASAGSATMALILFLIGTPRYRHFKPTGNPLSRICQVVVAATRKWKVQISDDDHDLLFYERDGIKQTSQNGARNILHT 312 (613)
Q Consensus 233 ~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (613)
.+.+..+..++..+..+. .++.++--.......+..+.+.+...+.... .. ..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~-~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~-----~~--~~~------------------ 255 (491)
T 4gc0_A 202 MFASECIPALLFLMLLYT-VPESPRWLMSRGKQEQAEGILRKIMGNTLAT-----QA--VQE------------------ 255 (491)
T ss_dssp HHHTTHHHHHHHHHHGGG-SCCCHHHHHHTTCHHHHHHHHHHHHHHHHHH-----HH--HHH------------------
T ss_pred Hhhhhhhhhhhhhhhhhc-CCCChHHHHHcCchhHHHHhHHHhcCCchhH-----HH--HHH------------------
Confidence 555444433333222222 2211100000000000001110000000000 00 000
Q ss_pred ccchhhhhhhhhccCCCCCCCCCCCCCCCCCCCCccccchhhhHHHHHHH-HHHHHHHH-hHHHhhhhhcccceeeeehh
Q 007201 313 QGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEVKCIL-RLLPIWLC-TILYSVVFTQMASLFVEQGA 390 (613)
Q Consensus 313 ~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 390 (613)
.+......+. .... .....+++.. .....+.. ...+.....+.+. . . .
T Consensus 256 ------~~~~~~~~~~---------------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~--~ 305 (491)
T 4gc0_A 256 ------IKHSLDHGRK---------------TGGR-----LLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPE-V-F--K 305 (491)
T ss_dssp ------HHHHHHHHHH---------------HTTH-----HHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHH-H-H--H
T ss_pred ------HHHHHHhhhh---------------hhhH-----HHHhcccHHHHHHHHHHHHHHhhhhHHHhcchH-H-H--H
Confidence 0000000000 0000 0000011111 11111100 0001111110000 0 0 0
Q ss_pred hcccCccccccCccccccchhHHHHHHHHhhhhhHHHhhhhhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 007201 391 AMKTNISTFHIPPASMSSFDILSVAAFIFIYRRVLDPLVERLTRKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLK 470 (613)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~~~l~~r~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~ 470 (613)
..... .........+..+..++...+...+ .+|++||+ .+..+..+++++++.++.....
T Consensus 306 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l----~dr~Grr~---------~~~~~~~~~~~~~~~l~~~~~~--- 365 (491)
T 4gc0_A 306 TLGAS----TDIALLQTIIVGVINLTFTVLAIMT----VDKFGRKP---------LQIIGALGMAIGMFSLGTAFYT--- 365 (491)
T ss_dssp HSSCC----HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHCSHH---------HHHHHHHHHHHHHHHHHHHHHT---
T ss_pred hcCCC----ccchhhHHHHHHHHHHHHHHHHHHH----HHhhcCcc---------hhccchHHHHHHHHHHHHHHhc---
Confidence 00000 1011112222233334444444443 66777665 5566666666666666544321
Q ss_pred hccccCCCCCCCCccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 007201 471 YSIKDCNSCESKASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSALCMTSISLGNYVSSLLVTIVMKI 550 (613)
Q Consensus 471 ~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~i~~~l~~~i~~~ 550 (613)
.......++..+++.........|..+.+..|.+|.+.|++++|+.+..+++++.+++.+.+.+...
T Consensus 366 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~ 432 (491)
T 4gc0_A 366 -------------QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKN 432 (491)
T ss_dssp -------------TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHH
T ss_pred -------------ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112222222222222223344577788999999999999999999999999999998887765432
Q ss_pred cCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccchh
Q 007201 551 STRPGWIPGNLNKGHLDRFYFLLAALTTADLFIYIICARWYKYIKFEERTVGDNAH 606 (613)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (613)
. |.. ...+....|++++++++++.++.+++.+|+|+++.||.++--+++
T Consensus 433 ~----~~~---~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~ 481 (491)
T 4gc0_A 433 S----WLV---AHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPE 481 (491)
T ss_dssp H----HHH---HHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC--
T ss_pred H----HHH---hhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCC
Confidence 1 000 001123468888999999999999999999999999876544433
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.87 E-value=1.6e-21 Score=205.70 Aligned_cols=166 Identities=11% Similarity=0.108 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHH
Q 007201 49 ILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVIGLV 128 (613)
Q Consensus 49 ~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~~~~ 128 (613)
+.+++..+............++.+ .+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence 445556666666666666666654 568999999999999999999999999999999996 999999999999999988
Q ss_pred HHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHHHHHH
Q 007201 129 SLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFSYFYL 208 (613)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~~~~~ 208 (613)
++.++ .+.+.+++.|++.|++.+...+...+++.|.+|+++ |++++++.+.
T Consensus 81 ~~~~~-----------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 131 (375)
T 2gfp_A 81 VAVTT-----------------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNM 131 (375)
T ss_dssp HHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHH
T ss_pred HHHHh-----------------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHH
Confidence 88876 247788999999999999999999999999999888 9999999999
Q ss_pred HHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Q 007201 209 ALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMAL 245 (613)
Q Consensus 209 ~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~ 245 (613)
..++|..++|.+++++.+..||+..|++.++..++..
T Consensus 132 ~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 168 (375)
T 2gfp_A 132 GILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVT 168 (375)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 9999999999999999988899999887776554443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.85 E-value=1.2e-21 Score=210.67 Aligned_cols=392 Identities=13% Similarity=0.060 Sum_probs=217.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVI 125 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~ 125 (613)
|.++.+....++....+..+.++++.|+++++|+++.+.+++.+.+.++..++++++|+++||+ ||||+++++..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 5666676766777777777788999999988999999999999999999999999999999996 999999988776654
Q ss_pred HHHHH---HhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhH
Q 007201 126 GLVSL---SVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAF 202 (613)
Q Consensus 126 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~ 202 (613)
+...+ .+. +. ....++..+.+.+++.|...+...+...+..++.. |.|+..
T Consensus 86 ~~~~~~~~~~~---~~-------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~ 139 (417)
T 2cfq_A 86 MFAPFFIFIFG---PL-------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSNFE 139 (417)
T ss_dssp CHHHHHHHTHH---HH-------------------HHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH----HHHTCC
T ss_pred HHHHHHHHHHH---HH-------------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh----hhcccc
Confidence 32111 111 00 00002223333334344333333344444333211 115666
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHcCCcccccCCCCChhhHHHHHHHHHHhhcccc
Q 007201 203 FSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTPRYRHFKPTGNPLSRICQVVVAATRKWKVQ 282 (613)
Q Consensus 203 ~~~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (613)
++..+...++|..++|.+++++.+ .+|+..|++.++..++..+..+...++ ++....
T Consensus 140 ~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~----~~~~~~------------------ 196 (417)
T 2cfq_A 140 FGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTD----APSSAT------------------ 196 (417)
T ss_dssp HHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCC----CSCSSC------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcc----cccccc------------------
Confidence 777777889999999999999876 578988886655433222221111111 100000
Q ss_pred ccCCcccchhhhcccccccccCCcccccccccchhhhhhhhhccCCCCCCCCCCCCCCCCCCCCccccchhhhHHHHHHH
Q 007201 283 ISDDDHDLLFYERDGIKQTSQNGARNILHTQGFKFLDKAAVITRKSDNDKNNGGDGENIDMRNPWVLCTVTQVEEVKCIL 362 (613)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 362 (613)
.++. + + ++ +.+.+++... +..++++...
T Consensus 197 ~~~~-------------~---~--~~---------------------------------~~~~~~~~~~-~~~~~~~~~~ 224 (417)
T 2cfq_A 197 VANA-------------V---G--AN---------------------------------HSAFSLKLAL-ELFRQPKLWF 224 (417)
T ss_dssp SSSS-------------S---S--SC---------------------------------CCCCCHHHHH-HHTTCHHHHH
T ss_pred cccc-------------c---c--cc---------------------------------cccccHHHHH-HHhcCCchhh
Confidence 0000 0 0 00 0000000000 0011122111
Q ss_pred HHHHHHHHhHHHhhhhhcccceeeeehhhcccCcccccc-CccccccchhHHHHHHHHhhhhhHHHhhhhhccCCCCCCC
Q 007201 363 RLLPIWLCTILYSVVFTQMASLFVEQGAAMKTNISTFHI-PPASMSSFDILSVAAFIFIYRRVLDPLVERLTRKSGTRGF 441 (613)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~l~~~l~~~l~~r~~~~~~~~~~ 441 (613)
..+..+.....+.....+.+.++.. ..... +.+. ..+....++.+..++...+.+++ .||+++|+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~g~l----~dr~g~~~----- 290 (417)
T 2cfq_A 225 LSLYVIGVSCTYDVFDQQFANFFTS---FFATG--EQGTRVFGYVTTMGELLNASIMFFAPLI----INRIGGKN----- 290 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---TSSSH--HHHTHHHHHHHHHHHHHHHHHHHHHHHH----HHHHCHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHhcc--CCChhHHHHHHHHHHHHHHHHHHHHHHH----HHHhcHHH-----
Confidence 1111111122222221222211110 01100 0000 11233344444455555555655 55654432
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchh
Q 007201 442 TELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESKASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGL 521 (613)
Q Consensus 442 ~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P~~~ 521 (613)
.+..+.++.+++++.+.+. .+.+.++...++.+++.....+..+.++.+..|++.
T Consensus 291 ----~l~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~ 345 (417)
T 2cfq_A 291 ----ALLLAGTIMSVRIIGSSFA---------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF 345 (417)
T ss_dssp ----HHHHHHHHHHHHHHHHTTC---------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHh---------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Confidence 4556666666665554321 123344444555666666666667889999999999
Q ss_pred HHHHHHH-HHHHHhHHHHHHHHHHHHHhhhcCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 007201 522 KSFGSAL-CMTSISLGNYVSSLLVTIVMKISTRPGWIPGNLNKGHLDRFYFLLAALTTADLFIYIICARWY 591 (613)
Q Consensus 522 rg~~~g~-~~~~~~lg~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~~~~~~~~~~ 591 (613)
||+++++ ++..+++|+.++|.+.+.+.+. .++...|.+.++++++++++.++..++.
T Consensus 346 ~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~-------------~g~~~~f~~~~~~~l~~~~~~~~~~~~~ 403 (417)
T 2cfq_A 346 SATIYLVCFCFFKQLAMIFMSVLAGNMYES-------------IGFQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHHHHHHHHTTTHHHHHHHHTHHHHTHHHH-------------SHHHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred HHHHHHHHHHHHHhHHHHHhhhhHHHHHHh-------------cCcHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 9999999 4888899999999998866532 1355678888888888777766555543
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.53 E-value=1.2e-13 Score=148.35 Aligned_cols=179 Identities=17% Similarity=0.101 Sum_probs=150.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhcc--CchHHHHHHHHH
Q 007201 45 WIAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYW--GRYKTCAIFQAI 122 (613)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~--Grr~~i~~~~~l 122 (613)
.|.++.+++..++....++++..+++.|+++.+|+++.+++.+.+...++..++.++.|+++|| + |||+.+..+..+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~ 329 (451)
T 1pw4_A 251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMT 329 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHH
Confidence 4677888888888889999999999999998899999999999999999999999999999999 7 999988887766
Q ss_pred HH-HHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhh
Q 007201 123 FV-IGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIA 201 (613)
Q Consensus 123 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~ 201 (613)
.. ++.+++.+. +. .+.+.+.+..++.|++.+...+...+++.|.+|++. |++
T Consensus 330 ~~~~~~~~~~~~---~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~ 382 (451)
T 1pw4_A 330 LVTIATIVYWMN---PA------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGT 382 (451)
T ss_dssp HHHHHHHHTTSC---CT------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHH
T ss_pred HHHHHHHHHHHh---cc------------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hhh
Confidence 65 454444332 11 235666777778888888888888999999999988 999
Q ss_pred HHHHHHHHHhH-HHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHc
Q 007201 202 FFSYFYLALNL-GSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIG 251 (613)
Q Consensus 202 ~~~~~~~~~~i-G~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~ 251 (613)
++++++...++ |..++|.+.|++.+..||+..|++.+++.+++.+..+..
T Consensus 383 ~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 383 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999999998899999988887776666555443
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.41 E-value=2.8e-12 Score=137.23 Aligned_cols=168 Identities=14% Similarity=0.062 Sum_probs=134.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLF-LTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFV 124 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~y-l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~ 124 (613)
|.++..++..++.....+++..+++.| +++.+|.+..+++...+...++..++.+++|+++||+ |||+++..+.++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 556667777777778888889999999 8888899999999999999999999999999999996 99999999988887
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHH
Q 007201 125 IGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFS 204 (613)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~ 204 (613)
++.+++.+. +. .. .+...++.+++.+...+...++..|.+|++ ++.+.+
T Consensus 337 ~~~~~~~~~---~~--------------------~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 385 (438)
T 3o7q_A 337 ALCLISAFA---GG--------------------HV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSS 385 (438)
T ss_dssp HHHHHHHHC---CH--------------------HH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHH
T ss_pred HHHHHHHHc---CC--------------------cH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhh
Confidence 777766654 11 22 233446778888888999999999998844 556666
Q ss_pred HHHHHHhHHHHHHHHHHHHhccccc-hhHHHHHHHHHHHHHHH
Q 007201 205 YFYLALNLGSLFSNTILGYFEDEGM-WALGFWASAGSATMALI 246 (613)
Q Consensus 205 ~~~~~~~iG~~~gp~l~g~l~~~~g-~~~~f~~~~~~~~i~~~ 246 (613)
+.. ...+|+.++|.+.|++.+..| ++..|++.+++.++..+
T Consensus 386 ~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 386 FIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 655 567999999999999999888 99888876655444433
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.36 E-value=3.6e-12 Score=136.46 Aligned_cols=178 Identities=7% Similarity=-0.008 Sum_probs=129.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---ChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQ---NNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAI 122 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~---~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l 122 (613)
|.++...+..+.....++....++|.|+++.++. +....+...++..++..++.+++|+++||+ |||+++..+.++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~ 298 (417)
T 2cfq_A 220 PKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTI 298 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHH
Confidence 4444444444444455556667788898766553 234456666677778888999999999996 999999988877
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhH
Q 007201 123 FVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAF 202 (613)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~ 202 (613)
..++.+.+.+. + +.+.+++..++.+++.+...+....+.+|.+|++. |+++
T Consensus 299 ~~~~~~~~~~~---~--------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~ 349 (417)
T 2cfq_A 299 MSVRIIGSSFA---T--------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATI 349 (417)
T ss_dssp HHHHHHHHTTC---C--------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHH
T ss_pred HHHHHHHHHHh---c--------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHH
Confidence 77765555443 1 24445555666666666666777889999999988 9999
Q ss_pred HHH-HHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHcCC
Q 007201 203 FSY-FYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTP 253 (613)
Q Consensus 203 ~~~-~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~ 253 (613)
.++ ++.+.++|+.++|.++|++.+..|++..|.+.+++.+++.+..+...+
T Consensus 350 ~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 350 YLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 998 577888999999999999988788888888877776666655444333
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.15 E-value=1.2e-10 Score=126.77 Aligned_cols=185 Identities=11% Similarity=0.043 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHH-----HHHHH
Q 007201 48 GILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCA-----IFQAI 122 (613)
Q Consensus 48 ~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~-----~~~~l 122 (613)
.+.+++..+.....++....+++.|+.+..+.+..+.+.......+...++.++.|+++||+ |||+... .+.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHH
Confidence 44455555555666666777888999988888877888888888999999999999999996 9986554 56555
Q ss_pred HHHHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhH
Q 007201 123 FVIGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAF 202 (613)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~ 202 (613)
..++.+++........ .....+.+.+++..++.+++.+...+...+++.|.+|++. |+++
T Consensus 364 ~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~ 423 (491)
T 4aps_A 364 AGLSFLLMAIPGALYG--------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NSQM 423 (491)
T ss_dssp HHHHHTTTHHHHHHCC--------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SSSS
T ss_pred HHHHHHHHHHHHHhcC--------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHH
Confidence 5555555444310000 0011235667777788899999989999999999999999 9999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHcCCc
Q 007201 203 FSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSATMALILFLIGTPR 254 (613)
Q Consensus 203 ~~~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~ 254 (613)
.++++...++|..++|.+.+++.+ .++...|.+.+...+++.+..+...++
T Consensus 424 ~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 424 MSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp THHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998876 466667777666666555555554443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.12 E-value=7.5e-10 Score=120.29 Aligned_cols=186 Identities=13% Similarity=0.087 Sum_probs=125.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAIFVI 125 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l~~~ 125 (613)
+..++.....++..+..+....+...++.+..+.+............+...++.++++++.||+ |||+.++.+.....+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~ 354 (491)
T 4gc0_A 276 GVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAI 354 (491)
T ss_dssp THHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHH
Confidence 3344444444444444333344444556667888888888888888899999999999999996 999999999888777
Q ss_pred HHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHh-ccccchhhhhhhhccCCCCCccccchhhhHHH
Q 007201 126 GLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALG-NGGYQPNIATFGADQFDEEDPKEGHSKIAFFS 204 (613)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g-~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~ 204 (613)
+.+.+........ .....++..++...+ .....+..+.+.+|.||++. |+++.+
T Consensus 355 ~~~~l~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~------R~~~~g 409 (491)
T 4gc0_A 355 GMFSLGTAFYTQA-------------------PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALA 409 (491)
T ss_dssp HHHHHHHHHHTTC-------------------CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTT------HHHHHH
T ss_pred HHHHHHHHHhccc-------------------chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhH------HHHHHH
Confidence 7766654421111 112222222222222 22345677889999999999 999999
Q ss_pred HHHHHHhHHHHHHHHHHHHhccc------cchhHHHHHHHHHHHHHHHHHHHcCCcccc
Q 007201 205 YFYLALNLGSLFSNTILGYFEDE------GMWALGFWASAGSATMALILFLIGTPRYRH 257 (613)
Q Consensus 205 ~~~~~~~iG~~~gp~l~g~l~~~------~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~ 257 (613)
+.+...++|+.+++.+.+.+.+. .++...|++.+++.+++.+..++..|+.++
T Consensus 410 ~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 410 IAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG 468 (491)
T ss_dssp HHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence 99999999999998887766432 345556777776666676666666666543
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.85 E-value=8.4e-10 Score=115.54 Aligned_cols=164 Identities=10% Similarity=-0.020 Sum_probs=125.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHH-HH
Q 007201 46 IAGILILVNQGLATLAFFGVGVNLVLFLTRVVGQNNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQAI-FV 124 (613)
Q Consensus 46 ~~~~~l~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~G~lsDr~~Grr~~i~~~~~l-~~ 124 (613)
|.++...+..++.....+.+..++|.|+++.+|.++.+++.+.+...++..++.++.|+++||+ |++ +..+... ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 5677777777888888888999999999988999999999999999999999999999999996 872 2223222 22
Q ss_pred HHHHHHHhhhcccccCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccccchhhhhhhhccCCCCCccccchhhhHHH
Q 007201 125 IGLVSLSVSSYAFLLKPSGCGDEGNPCGSHSSLHMALFYLSIYLTALGNGGYQPNIATFGADQFDEEDPKEGHSKIAFFS 204 (613)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~p~~~~~~~~~r~~~~~ 204 (613)
.+...+..... + ..+.+.+++..++.+++.+...+...++..|.+| ++ |+++.+
T Consensus 276 ~~~~~~~~~~~-~------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~~~g 329 (375)
T 2gfp_A 276 AGLLMWIPDWF-G------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGTAGA 329 (375)
T ss_dssp TSSSSSHHHHH-H------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHHHHH
T ss_pred HHHHHHHHhhh-c------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cchHHH
Confidence 22221111100 0 0135556677778889999999999999999998 66 999999
Q ss_pred HHHHHHhHHHHHHHHHHHHhccccchhHHHHHHH
Q 007201 205 YFYLALNLGSLFSNTILGYFEDEGMWALGFWASA 238 (613)
Q Consensus 205 ~~~~~~~iG~~~gp~l~g~l~~~~g~~~~f~~~~ 238 (613)
+.+...++|..++|.+.+.+.+..+|...+.+.+
T Consensus 330 ~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 330 LVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 9999999999999999999887777777666543
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.04 E-value=6.4e-06 Score=89.97 Aligned_cols=137 Identities=12% Similarity=0.076 Sum_probs=96.6
Q ss_pred cccccchhHHHHHHHHhhhhhHHHhhhhh-ccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCC
Q 007201 404 ASMSSFDILSVAAFIFIYRRVLDPLVERL-TRKSGTRGFTELQRMGVGLVIAIMAMISAGVVEIFRLKYSIKDCNSCESK 482 (613)
Q Consensus 404 ~~~~~~~~v~~~~~~~l~~~l~~~l~~r~-~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (613)
+++.....+..++..++.+++ .+|+ +||+ .+.++.++.+++.+++.+.
T Consensus 57 g~~~~~~~~~~~~~~~~~G~l----~dr~~g~r~---------~~~~~~~~~~~~~~~~~~~------------------ 105 (524)
T 2xut_A 57 KDVFHSFVIGVYFFPLLGGWI----ADRFFGKYN---------TILWLSLIYCVGHAFLAIF------------------ 105 (524)
T ss_dssp HHHHHHHHHHHHHTHHHHHHH----HTTSSCSHH---------HHHHHHHHHHHHHHHHHHT------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHhcchH---------HHHHHHHHHHHHHHHHHHh------------------
Confidence 444555566666677777766 5666 6543 5667777777777666543
Q ss_pred CccchhHHHHHHHHHHHHHHHhhhhhhhhhhhccCCchhHHHHHHH---HHHHHhHHHHHHHHHHHHHhhhcCCCCCCCC
Q 007201 483 ASTLSIFWQIPQYVLIGASEVFMYVGQLEFFNGQAPDGLKSFGSAL---CMTSISLGNYVSSLLVTIVMKISTRPGWIPG 559 (613)
Q Consensus 483 ~~~~s~~~~i~~~~l~g~~~~~~~p~~~~~~~~~~P~~~rg~~~g~---~~~~~~lg~~i~~~l~~~i~~~~~~~~~~~~ 559 (613)
. .+.+.++...++.|++.+...|...+++.+.+|++.|+...++ .+....+|..+++.+.+.+.+..
T Consensus 106 ~--~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-------- 175 (524)
T 2xut_A 106 E--HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF-------- 175 (524)
T ss_dssp S--SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS--------
T ss_pred c--ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------
Confidence 1 1445667778889999999999999999999999999876666 88888899999988877654311
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHH
Q 007201 560 NLNKGHLDRFYFLLAALTTADLFIYII 586 (613)
Q Consensus 560 ~~~~~~~~~~f~~~a~~~~~~~~~~~~ 586 (613)
+....|++.+++.+++++.+++
T Consensus 176 -----g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 176 -----GAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHS
T ss_pred -----cHHHHHHHHHHHHHHHHHHHHH
Confidence 2456777777776666555443
Done!