BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007203
(613 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O35604|NPC1_MOUSE Niemann-Pick C1 protein OS=Mus musculus GN=Npc1 PE=1 SV=2
Length = 1277
Score = 458 bits (1178), Expect = e-128, Method: Compositional matrix adjust.
Identities = 260/659 (39%), Positives = 394/659 (59%), Gaps = 73/659 (11%)
Query: 1 MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVI 60
MF YIS+ALG S V SK+ LG++G+++V+ SV S+G FS +G+ TLI++EVI
Sbjct: 631 MFLYISLALGHIQSCSRLLVDSKISLGIAGILIVLSSVACSLGIFSYMGMPLTLIVIEVI 690
Query: 61 PFLVLAVGVDNMCILVNAVKRQP--MELVLETRISNALVEVGPSITLASLSEFLAFAVGS 118
PFLVLAVGVDN+ ILV +R E L+ ++ L EV P++ L+S SE AF G+
Sbjct: 691 PFLVLAVGVDNIFILVQTYQRDERLQEETLDQQLGRILGEVAPTMFLSSFSETSAFFFGA 750
Query: 119 FIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVH------------------------ 154
MPA FS+FA +AVL+DF LQ+T FV+L+ +
Sbjct: 751 LSSMPAVHTFSLFAGMAVLIDFLLQITCFVSLLGLDIKRQEKNHLDILCCVRGADDGQGS 810
Query: 155 ---------------APILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDS 199
AP+L ++ +VV+VF+ S+A+ +++ GL+Q + +P DS
Sbjct: 811 HASESYLFRFFKNYFAPLLLKDWLRPIVVAVFVGVLSFSVAVVNKVDIGLDQSLSMPNDS 870
Query: 200 YLQGYFDNTTEYLRVGPPLYFVVKD-YNYSSESRHTNQLCSISQCDSNSLLNEISRASSI 258
Y+ YF + +YL GPP+YFV+++ YNYSS + N +C CD++SL+ +I A+ +
Sbjct: 871 YVIDYFKSLAQYLHSGPPVYFVLEEGYNYSSR-KGQNMVCGGMGCDNDSLVQQIFNAAEL 929
Query: 259 PELSYIAKPAASWLDDFLVWTSPEAFGCCRKF-VNGTYCPPDDQPPCCSPDEEPCGVNGV 317
+ + +SW+DD+ W SP++ CCR + V +C P
Sbjct: 930 DTYTRVGFAPSSWIDDYFDWVSPQS-SCCRLYNVTHQFCNASVMDP-------------- 974
Query: 318 CKDCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGI 377
C C + RP ++F + LP FL+ P+ C KGGH AY ++V++ G +
Sbjct: 975 --TCVRCRPLTPEGKQRPQGKEFMKFLPMFLSDNPNPKCGKGGHAAYGSAVNIVG-DDTY 1031
Query: 378 IQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLK-----INIFPYSVFYIFFEQYL 432
I A+ F T+HT L DY ++++ AR +S +++T++ +FPYSVFY+F+EQYL
Sbjct: 1032 IGATYFMTYHTILKTSADYTDAMKKARLIASNITETMRSKGSDYRVFPYSVFYVFYEQYL 1091
Query: 433 DIWRVALINIAVALGAIFIVCL-LMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAV 491
I + N++V+LG+IF+V L ++ LWS+ I+ + + MI++++ GVM + GI LNAV
Sbjct: 1092 TIIDDTIFNLSVSLGSIFLVTLVVLGCELWSAVIMCITIAMILVNMFGVMWLWGISLNAV 1151
Query: 492 SVVNLIMSIGIAVEFCVHIVHAFLVS-HGNRNQRSQKALSTMGASVFSGITLTKLVGVIV 550
S+VNL+MS GI+VEFC HI AF +S G+R R+++AL+ MG+SVFSGITLTK G++V
Sbjct: 1152 SLVNLVMSCGISVEFCSHITRAFTMSTKGSRVSRAEEALAHMGSSVFSGITLTKFGGIVV 1211
Query: 551 LCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGP----PSRHIIIEKQQADE 605
L FA+S+IF ++YF+MYLA+V++G HGL+FLPV+LS GP RH E+ + E
Sbjct: 1212 LAFAKSQIFEIFYFRMYLAMVLLGATHGLIFLPVLLSYIGPSVNKAKRHTTYERYRGTE 1270
>sp|P56941|NPC1_PIG Niemann-Pick C1 protein OS=Sus scrofa GN=NPC1 PE=2 SV=1
Length = 1277
Score = 456 bits (1172), Expect = e-127, Method: Compositional matrix adjust.
Identities = 260/640 (40%), Positives = 390/640 (60%), Gaps = 67/640 (10%)
Query: 1 MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVI 60
MF YIS+ALG S V SK+ LG++G+++V+ SV S+G FS IGV TLI++EVI
Sbjct: 631 MFLYISIALGHIKSCSRLLVDSKISLGIAGILIVLSSVACSLGIFSYIGVPLTLIVIEVI 690
Query: 61 PFLVLAVGVDNMCILVNAVKRQP--MELVLETRISNALVEVGPSITLASLSEFLAFAVGS 118
PFLVLAVGVDN+ ILV +R L+ ++ L EV PS+ L+S SE +AF +G
Sbjct: 691 PFLVLAVGVDNIFILVQTYQRDERLQGETLDQQLGRVLGEVAPSMFLSSFSETVAFFLGG 750
Query: 119 FIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEV------------------------- 153
+PA FS+FA +AVL+DF LQ+T FV+L+ +
Sbjct: 751 LSVVPAVHTFSLFAGMAVLIDFLLQITCFVSLLGLDIKRQEKNRLDVVCCVQGAEDGAGV 810
Query: 154 --------------HAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDS 199
+AP+L ++ +V++VF+ SIA+ ++E GL+Q + +P DS
Sbjct: 811 QASESCLFRFFKNSYAPLLLKDWMRPIVIAVFVGVLSFSIAVLNKVEIGLDQSLSMPDDS 870
Query: 200 YLQGYFDNTTEYLRVGPPLYFVVKD-YNYSSESRHTNQLCSISQCDSNSLLNEISRASSI 258
Y+ YF + + YL GPP+YFVV++ +NY+S + N +C C+++SL+ +I A+ +
Sbjct: 871 YVMDYFQSLSRYLHAGPPVYFVVEEGHNYTS-LKGQNMVCGGLGCNNDSLVQQIFTAAQL 929
Query: 259 PELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVC 318
+ I +SW+DD+ W P++ CCR + N T ++ C + V
Sbjct: 930 DNYTRIGFAPSSWIDDYFDWIKPQS-SCCRVY-NST--------------DQFCNASVVD 973
Query: 319 KDCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGII 378
C C + RP E F LP FL+ P+ C KGGH AYS++V++ G SG+
Sbjct: 974 PTCIRCRPLTSEGKQRPQGEDFMRFLPMFLSDNPNPKCGKGGHAAYSSAVNILGNGSGV- 1032
Query: 379 QASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKIN-----IFPYSVFYIFFEQYLD 433
A+ F T+HT L D++++++ AR +S ++ T+ + +FPYSVFY+F+EQYL
Sbjct: 1033 GATYFMTYHTVLQASADFIDAMQKARLIASNITRTMGLEASSYRVFPYSVFYVFYEQYLT 1092
Query: 434 IWRVALINIAVALGAIFIVCL-LMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVS 492
+ + N+ V+LGAIF+V + LM LW++ I+ V + MI++++ GVM + GI LNAVS
Sbjct: 1093 VIDDTIFNLGVSLGAIFLVTVVLMGCELWATVIMCVTIAMILVNMFGVMWLWGISLNAVS 1152
Query: 493 VVNLIMSIGIAVEFCVHIVHAF-LVSHGNRNQRSQKALSTMGASVFSGITLTKLVGVIVL 551
+VNL+MS GI+VEFC HI AF L + G+R R+++AL+ MG+SVFSGITLTK G++VL
Sbjct: 1153 LVNLVMSCGISVEFCSHITRAFTLSTKGSRVDRAEEALAHMGSSVFSGITLTKFGGIVVL 1212
Query: 552 CFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGP 591
FA+S+IF ++YF+MYLA+V++G HGL+FLPV+LS GP
Sbjct: 1213 AFAKSQIFQIFYFRMYLAIVLLGATHGLIFLPVLLSYIGP 1252
>sp|O15118|NPC1_HUMAN Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE=1 SV=2
Length = 1278
Score = 451 bits (1161), Expect = e-126, Method: Compositional matrix adjust.
Identities = 253/639 (39%), Positives = 386/639 (60%), Gaps = 64/639 (10%)
Query: 1 MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVI 60
MF YIS+ALG V SKV LG++G+++V+ SV S+G FS IG+ TLI++EVI
Sbjct: 631 MFLYISLALGHMKSCRRLLVDSKVSLGIAGILIVLSSVACSLGVFSYIGLPLTLIVIEVI 690
Query: 61 PFLVLAVGVDNMCILVNAVKRQP--MELVLETRISNALVEVGPSITLASLSEFLAFAVGS 118
PFLVLAVGVDN+ ILV A +R L+ ++ L EV PS+ L+S SE +AF +G+
Sbjct: 691 PFLVLAVGVDNIFILVQAYQRDERLQGETLDQQLGRVLGEVAPSMFLSSFSETVAFFLGA 750
Query: 119 FIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEV------------------------- 153
MPA FS+FA LAV +DF LQ+T FV+L+ +
Sbjct: 751 LSVMPAVHTFSLFAGLAVFIDFLLQITCFVSLLGLDIKRQEKNRLDIFCCVRGAEDGTSV 810
Query: 154 --------------HAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDS 199
++P+L ++ +V+++F+ SIA+ +++ GL+Q + +P DS
Sbjct: 811 QASESCLFRFFKNSYSPLLLKDWMRPIVIAIFVGVLSFSIAVLNKVDIGLDQSLSMPDDS 870
Query: 200 YLQGYFDNTTEYLRVGPPLYFVVKDYNYSSESRHTNQLCSISQCDSNSLLNEISRASSIP 259
Y+ YF + ++YL GPP+YFV+++ + + S+ N +C C+++SL+ +I A+ +
Sbjct: 871 YMVDYFKSISQYLHAGPPVYFVLEEGHDYTSSKGQNMVCGGMGCNNDSLVQQIFNAAQLD 930
Query: 260 ELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVCK 319
+ I +SW+DD+ W P++ CCR V+ ++ C + V
Sbjct: 931 NYTRIGFAPSSWIDDYFDWVKPQS-SCCR--VDNI-------------TDQFCNASVVDP 974
Query: 320 DCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQ 379
C C + RP F LP FL+ P+ C KGGH AYS++V++ +
Sbjct: 975 ACVRCRPLTPEGKQRPQGGDFMRFLPMFLSDNPNPKCGKGGHAAYSSAVNILLGHGTRVG 1034
Query: 380 ASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKIN-----IFPYSVFYIFFEQYLDI 434
A+ F T+HT L D++++L+ AR +S +++T+ IN +FPYSVFY+F+EQYL I
Sbjct: 1035 ATYFMTYHTVLQTSADFIDALKKARLIASNVTETMGINGSAYRVFPYSVFYVFYEQYLTI 1094
Query: 435 WRVALINIAVALGAIFIVCL-LMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSV 493
+ N+ V+LGAIF+V + L+ LWS+ I+ + M+++++ GVM + GI LNAVS+
Sbjct: 1095 IDDTIFNLGVSLGAIFLVTMVLLGCELWSAVIMCATIAMVLVNMFGVMWLWGISLNAVSL 1154
Query: 494 VNLIMSIGIAVEFCVHIVHAFLVS-HGNRNQRSQKALSTMGASVFSGITLTKLVGVIVLC 552
VNL+MS GI+VEFC HI AF VS G+R +R+++AL+ MG+SVFSGITLTK G++VL
Sbjct: 1155 VNLVMSCGISVEFCSHITRAFTVSMKGSRVERAEEALAHMGSSVFSGITLTKFGGIVVLA 1214
Query: 553 FARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGP 591
FA+S+IF ++YF+MYLA+V++G HGL+FLPV+LS GP
Sbjct: 1215 FAKSQIFQIFYFRMYLAMVLLGATHGLIFLPVLLSYIGP 1253
>sp|Q6T3U3|NPCL1_RAT Niemann-Pick C1-like protein 1 OS=Rattus norvegicus GN=Npc1l1 PE=1
SV=1
Length = 1331
Score = 397 bits (1020), Expect = e-109, Method: Compositional matrix adjust.
Identities = 247/666 (37%), Positives = 382/666 (57%), Gaps = 76/666 (11%)
Query: 1 MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVI 60
+F YIS+ALG R S V SK LGL GVI+V+ +VL ++GF+S +GV S+L+I++V+
Sbjct: 643 VFLYISLALGSYSRCSRVAVESKATLGLGGVIVVLGAVLAAMGFYSYLGVPSSLVIIQVV 702
Query: 61 PFLVLAVGVDNMCILV---NAVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVG 117
PFLVLAVG DN+ I V + R P E E I L V PS+ L SLSE + F +G
Sbjct: 703 PFLVLAVGADNIFIFVLEYQRLPRMPGE-QREAHIGRTLGSVAPSMLLCSLSEAICFFLG 761
Query: 118 SFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI-------------------------- 151
+ PMPA R F++ + LA++LDF LQ+TAFVAL+
Sbjct: 762 ALTPMPAVRTFALTSGLAIILDFLLQMTAFVALLSLDSKRQEASRPDVLCCFSTRKLPPP 821
Query: 152 ------------EVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDS 199
+++AP L ++ VV+ +FL A++ L I GL+Q++ LP+DS
Sbjct: 822 KEKEGLLLRFFRKIYAPFLLHRFIRPVVMLLFLTLFGANLYLMCNINVGLDQELALPKDS 881
Query: 200 YLQGYFDNTTEYLRVGPPLYFVVKD-YNYSSESRHTNQLCSISQCDSNSLLNEISRASSI 258
YL YF YL VGPP+YFV +N+SSE+ N CS + C S SL +I AS
Sbjct: 882 YLIDYFLFLNRYLEVGPPVYFVTTSGFNFSSEA-GMNATCSSAGCKSFSLTQKIQYASEF 940
Query: 259 PELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVC 318
P+ SY+A A+SW+DDF+ W +P + CCR ++ G + +E C
Sbjct: 941 PDQSYVAIAASSWVDDFIDWLTPSS-SCCRLYIRGPH------------KDEFCPSTDTS 987
Query: 319 KDCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGII 378
+C + L RP+ EQF + LPWFLN P+ C KGG AY TSV+L+ G +
Sbjct: 988 FNCLKNCMNRTLGPVRPTAEQFHKYLPWFLNDPPNIRCPKGGLAAYRTSVNLS--SDGQV 1045
Query: 379 QASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLK--------INIFPYSVFYIFFEQ 430
AS+F +H PL D+ +LRA+R ++ ++ L+ +FPY++ +F++Q
Sbjct: 1046 IASQFMAYHKPLRNSQDFTEALRASRLLAANITADLRKVPGTDPNFEVFPYTISNVFYQQ 1105
Query: 431 YLDIWRVALINIAVALGAIFIVC-LLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLN 489
YL + + +A+ F+VC LL+ + S + L+ ++MI++D +G+MA+ GI N
Sbjct: 1106 YLTVLPEGIFTLALCFVPTFVVCYLLLGLDMCSGILNLLSIIMILVDTIGLMAVWGISYN 1165
Query: 490 AVSVVNLIMSIGIAVEFCVHIVHAFLVS-HGNRNQRSQKALSTMGASVFSGITLTKLVGV 548
AVS++NL+ ++G++VEF HI +F VS R +R++ A MG++VF+G+ +T G+
Sbjct: 1166 AVSLINLVTAVGMSVEFVSHITRSFAVSTKPTRLERAKDATVFMGSAVFAGVAMTNFPGI 1225
Query: 549 IVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPSRHIIIEKQQ------ 602
++L FA++++ +++F++ L + ++G LHGLVFLPV+LS GP ++++++
Sbjct: 1226 LILGFAQAQLIQIFFFRLNLLITLLGLLHGLVFLPVVLSYLGPDVNQALVQEEKLASEAA 1285
Query: 603 -ADEPS 607
A EPS
Sbjct: 1286 VAPEPS 1291
>sp|Q9UHC9|NPCL1_HUMAN Niemann-Pick C1-like protein 1 OS=Homo sapiens GN=NPC1L1 PE=1 SV=2
Length = 1359
Score = 367 bits (943), Expect = e-100, Method: Compositional matrix adjust.
Identities = 256/683 (37%), Positives = 387/683 (56%), Gaps = 94/683 (13%)
Query: 1 MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVI 60
+F YIS+ALG +S V SK LGL GV +V+ +V+ ++GFFS +G++S+L+I++V+
Sbjct: 643 IFLYISLALGSYSSWSRVMVDSKATLGLGGVAVVLGAVMAAMGFFSYLGIRSSLVILQVV 702
Query: 61 PFLVLAVGVDNMCILV---NAVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVG 117
PFLVL+VG DN+ I V + R+P E E I AL V PS+ L SLSE + F +G
Sbjct: 703 PFLVLSVGADNIFIFVLEYQRLPRRPGE-PREVHIGRALGRVAPSMLLCSLSEAICFFLG 761
Query: 118 SFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI-------------------------- 151
+ PMPA R F++ + LAV+LDF LQ++AFVAL+
Sbjct: 762 ALTPMPAVRTFALTSGLAVILDFLLQMSAFVALLSLDSKRQEASRLDVCCCVKPQELPPP 821
Query: 152 ------------EVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDS 199
+ +AP L W + VV+ +FLA S+ I GL+Q++ LP+DS
Sbjct: 822 GQGEGLLLGFFQKAYAPFLLHWITRGVVLLLFLALFGVSLYSMCHISVGLDQELALPKDS 881
Query: 200 YLQGYFDNTTEYLRVGPPLYFVVK-DYNYSSESRHTNQLCSISQCDSNSLLNEISRASSI 258
YL YF Y VG P+YFV YN+SSE+ N +CS + C++ S +I A+
Sbjct: 882 YLLDYFLFLNRYFEVGAPVYFVTTLGYNFSSEA-GMNAICSSAGCNNFSFTQKIQYATEF 940
Query: 259 PELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVC 318
PE SY+A PA+SW+DDF+ W +P + CCR +++G P+ C P VN +
Sbjct: 941 PEQSYLAIPASSWVDDFIDWLTPSS--CCRLYISG----PNKDKFC------PSTVNSL- 987
Query: 319 KDCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNG------ 372
+C + + RPS EQF + LPWFLN P+ C KGG AYSTSV+L
Sbjct: 988 -NCLKNCMSITMGSVRPSVEQFHKYLPWFLNDRPNIKCPKGGLAAYSTSVNLTSDGQVLD 1046
Query: 373 ---------YESGIIQA----------SEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDT 413
SG I A S F +H PL DY +LRAARE ++ ++
Sbjct: 1047 TVAILSPRLEYSGTISAHCNLYLLDSTSRFMAYHKPLKNSQDYTEALRAARELAANITAD 1106
Query: 414 LK--------INIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIV-CLLMTSSLWSSA 464
L+ +FPY++ +F+EQYL I L +++ L F V CLL+ L S
Sbjct: 1107 LRKVPGTDPAFEVFPYTITNVFYEQYLTILPEGLFMLSLCLVPTFAVSCLLLGLDLRSGL 1166
Query: 465 IILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVS-HGNRNQ 523
+ L+ +VMI++D +G MA+ GI NAVS++NL+ ++G++VEF HI +F +S +
Sbjct: 1167 LNLLSIVMILVDTVGFMALWGISYNAVSLINLVSAVGMSVEFVSHITRSFAISTKPTWLE 1226
Query: 524 RSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLP 583
R+++A +MG++VF+G+ +T L G++VL A++++ +++F++ L + ++G LHGLVFLP
Sbjct: 1227 RAKEATISMGSAVFAGVAMTNLPGILVLGLAKAQLIQIFFFRLNLLITLLGLLHGLVFLP 1286
Query: 584 VILSLFGPP-SRHIIIEKQQADE 605
VILS GP + + +E+++A+E
Sbjct: 1287 VILSYVGPDVNPALALEQKRAEE 1309
>sp|Q6T3U4|NPCL1_MOUSE Niemann-Pick C1-like protein 1 OS=Mus musculus GN=Npc1l1 PE=2 SV=1
Length = 1333
Score = 363 bits (932), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 242/658 (36%), Positives = 378/658 (57%), Gaps = 70/658 (10%)
Query: 1 MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVI 60
+F YIS+ALG R+S V SK LGL GV +V+ +V+ ++GF+S +GV S+L+I++V+
Sbjct: 643 VFLYISLALGSYSRWSRVAVDSKATLGLGGVAVVLGAVVAAMGFYSYLGVPSSLVIIQVV 702
Query: 61 PFLVLAVGVDNMCILV---NAVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVG 117
PFLVLAVG DN+ I V + R P E E I L V PS+ L SLSE + F +G
Sbjct: 703 PFLVLAVGADNIFIFVLEYQRLPRMPGE-QREAHIGRTLGSVAPSMLLCSLSEAICFFLG 761
Query: 118 SFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI-------------------------- 151
+ MPA R F++ + LA++ DF LQ+TAFVAL+
Sbjct: 762 ALTSMPAVRTFALTSGLAIIFDFLLQMTAFVALLSLDSKRQEASRPDVVCCFSSRNLPPP 821
Query: 152 ------------EVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDS 199
+++ P L ++ VV+ +FL A++ L I GL+Q + LP+DS
Sbjct: 822 KQKEGLLLCFFRKIYTPFLLHRFIRPVVLLLFLVLFGANLYLMCNISVGLDQDLALPKDS 881
Query: 200 YLQGYFDNTTEYLRVGPPLYF-VVKDYNYSSESRHTNQLCSISQCDSNSLLNEISRASSI 258
YL YF YL VGPP+YF YN+S+E+ N +CS + C+S SL +I AS
Sbjct: 882 YLIDYFLFLNRYLEVGPPVYFDTTSGYNFSTEA-GMNAICSSAGCESFSLTQKIQYASEF 940
Query: 259 PELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVC 318
P SY+A A+SW+DDF+ W +P + CCR + G + +E C
Sbjct: 941 PNQSYVAIAASSWVDDFIDWLTPSS-SCCRIYTRGPH------------KDEFCPSTDTS 987
Query: 319 KDCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGII 378
+C + L RP+TEQF + LPWFLN P+ C KGG AY TSV+L+ G I
Sbjct: 988 FNCLKNCMNRTLGPVRPTTEQFHKYLPWFLNDTPNIRCPKGGLAAYRTSVNLS--SDGQI 1045
Query: 379 QASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLK--------INIFPYSVFYIFFEQ 430
AS+F +H PL D+ +LRA+R ++ ++ L+ +FPY++ +F++Q
Sbjct: 1046 IASQFMAYHKPLRNSQDFTEALRASRLLAANITAELRKVPGTDPNFEVFPYTISNVFYQQ 1105
Query: 431 YLDIWRVALINIAVALGAIFIVC-LLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLN 489
YL + + +A+ F+VC LL+ + S + L+ ++MI++D +G+MA+ GI N
Sbjct: 1106 YLTVLPEGIFTLALCFVPTFVVCYLLLGLDIRSGILNLLSIIMILVDTIGLMAVWGISYN 1165
Query: 490 AVSVVNLIMSIGIAVEFCVHIVHAFLVS-HGNRNQRSQKALSTMGASVFSGITLTKLVGV 548
AVS++NL+ ++G++VEF HI +F VS R +R++ A MG++VF+G+ +T G+
Sbjct: 1166 AVSLINLVTAVGMSVEFVSHITRSFAVSTKPTRLERAKDATIFMGSAVFAGVAMTNFPGI 1225
Query: 549 IVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPP-SRHIIIEKQQADE 605
++L FA++++ +++F++ L + ++G LHGLVFLPV+LS GP ++ +++E++ A E
Sbjct: 1226 LILGFAQAQLIQIFFFRLNLLITLLGLLHGLVFLPVVLSYLGPDVNQALVLEEKLATE 1283
>sp|Q12200|NPC1_YEAST Niemann-Pick type C-related protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NCR1 PE=1 SV=1
Length = 1170
Score = 317 bits (813), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 196/571 (34%), Positives = 315/571 (55%), Gaps = 56/571 (9%)
Query: 34 VMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKR---QPMELVLET 90
V+ S++ + GF + G+KSTLII EVIPFL+LA+G+DN+ ++ + R Q E ++
Sbjct: 595 VLASIVCAAGFLTLFGLKSTLIIAEVIPFLILAIGIDNIFLITHEYDRNCEQKPEYSIDQ 654
Query: 91 RISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVAL 150
+I +A+ + PSI ++ L + F + +F+ MPA F++++ ++V+ + LQ+TA+V++
Sbjct: 655 KIISAIGRMSPSILMSLLCQTGCFLIAAFVTMPAVHNFAIYSTVSVIFNGVLQLTAYVSI 714
Query: 151 I----------------EVHAPILGLWGVKMV-----VVSVFLAFTVASIALSTRIEAGL 189
+ E L + KM+ ++ +F A+ S+ I+ GL
Sbjct: 715 LSLYEKRSNYKQITGNEETKESFLKTFYFKMLTQKRLIIIIFSAWFFTSLVFLPEIQFGL 774
Query: 190 EQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVKDYNYSSESRHTNQLCSISQCDSNSLL 249
+Q + +P+DSYL YF + +L VGPP+Y VVK+ + + + C+ +SL
Sbjct: 775 DQTLAVPQDSYLVDYFKDVYSFLNVGPPVYMVVKNLDLTKRQNQQKICGKFTTCERDSLA 834
Query: 250 NEISRASSIPELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDE 309
N + + S I +P A+WLDD+ ++ +P+ CCR GT +
Sbjct: 835 NVLEQER---HRSTITEPLANWLDDYFMFLNPQNDQCCR-LKKGT--------------D 876
Query: 310 EPCGVNGVCKDCTTCFRHSDLVNNR---PSTEQFREKLPWFLNALPSADCAKGGHGAYST 366
E C + + C TCF+ N P + F E L ++NA PS C GG YST
Sbjct: 877 EVCPPSFPSRRCETCFQQGSWNYNMSGFPEGKDFMEYLSIWINA-PSDPCPLGGRAPYST 935
Query: 367 SVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYI 426
++ Y + AS FRT H PL Q D++ + SS + +++F YS FYI
Sbjct: 936 AL---VYNETSVSASVFRTAHHPLRSQKDFIQAYSDGVRISSSFPE---LDMFAYSPFYI 989
Query: 427 FFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGI 486
FF QY + + L I A+ IF + + ++ SS ++ +V+ MI++D+ +MA+LGI
Sbjct: 990 FFVQYQTLGPLTLKLIGSAIILIFFISSVFLQNIRSSFLLALVVTMIIVDIGALMALLGI 1049
Query: 487 QLNAVSVVNLIMSIGIAVEFCVHIVHAFLV----SHGNRNQRSQKALSTMGASVFSGITL 542
LNAVS+VNLI+ +G+ VEFCVHIV +F V + + N R +L+T+G SV GITL
Sbjct: 1050 SLNAVSLVNLIICVGLGVEFCVHIVRSFTVVPSETKKDANSRVLYSLNTIGESVIKGITL 1109
Query: 543 TKLVGVIVLCFARSEIFVVYYFQMYLALVII 573
TK +GV VL FA+S+IF V+YF+M+ L+I+
Sbjct: 1110 TKFIGVCVLAFAQSKIFDVFYFRMWFTLIIV 1140
>sp|Q19127|NPC1_CAEEL Niemann-Pick C1 protein homolog 1 OS=Caenorhabditis elegans GN=ncr-1
PE=1 SV=2
Length = 1383
Score = 218 bits (555), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 174/680 (25%), Positives = 311/680 (45%), Gaps = 88/680 (12%)
Query: 1 MFAYISVALGD----TPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLII 56
+ Y++ +LG + S V S++ LG+ VI+ +LS S G FS G+
Sbjct: 638 LIGYVTFSLGRYFVCENQLWSILVHSRICLGMLSVIINLLSSFCSWGIFSMFGIHPVKNA 697
Query: 57 MEVIPFLVLAVGVDNMCILVN--AVKRQPMELVLETRISN--ALVEVG--PSITLASLSE 110
+ V F+V +GV ++V A +R M + + +V G P++ +SL
Sbjct: 698 LVVQFFVVTLLGVCRTFMVVKYYAQQRVSMPYMSPDQCPEIVGMVMAGTMPAMFSSSLGC 757
Query: 111 FLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI------EVH---------- 154
+F +G F +PA R F ++A LAVL+D L T F+AL E++
Sbjct: 758 AFSFFIGGFTDLPAIRTFCLYAGLAVLIDVVLHCTIFLALFVWDTQRELNGKPEFFFPYQ 817
Query: 155 ----------------------------APILGLWGVKMVVVSVFLAFTVASIALSTRIE 186
AP L +++ +F+A + ++ LS++I
Sbjct: 818 IKDLLGAYLIGRQRATDTFMTQFFHFQVAPFLMHRMTRIITGIIFIASFITTVILSSKIS 877
Query: 187 AGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVKDYNYSSESRHTNQLCSISQCDSN 246
G +Q + SY+ +F ++ VGPP++F V N+ C+ C
Sbjct: 878 VGFDQSMAFTEKSYISTHFRYLDKFFDVGPPVFFTVDGELDWHRPDVQNKFCTFPGCSDT 937
Query: 247 SLLNEISRASSIPELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCS 306
S N ++ A E +Y++ +W+D++L W S ++ CC+ +V+ D CS
Sbjct: 938 SFGNIMNYAVGHTEQTYLSGEMYNWIDNYLEWISRKS-PCCKVYVH-------DPNTFCS 989
Query: 307 PDEEPCGVNGVCKDCTTC---------FRHSDLVNNRPSTEQFREKLPWFLNALPSADCA 357
+ ++ K C TC + S ++ +RPS E F L FL P+++C
Sbjct: 990 TNRNKSALDD--KACRTCMDFDYVANSYPKSSIMYHRPSIEVFYRHLRHFLEDTPNSECV 1047
Query: 358 KGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLN--KQGDYVNSLRAAREFSSRMSDTLK 415
GG ++ ++ G IQAS+F TFH L+ D++ ++ AR S R+ ++
Sbjct: 1048 FGGRASFKDAISFTS--RGRIQASQFMTFHKKLSISNSSDFIKAMDTARMVSRRLERSID 1105
Query: 416 --INIFPYSVFYIFFEQYLDIWRVALINIAVALGAIF-IVCLLMTSSLWSSAIILVVLVM 472
++F YS + F+EQY I + + + + +F I+C+ + + +A ++ V
Sbjct: 1106 DTAHVFAYSKIFPFYEQYSTIMPILTTQLFITVVGVFGIICVTLGIDVKGAACAVICQVS 1165
Query: 473 IVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVSHGNR-NQRSQKALST 531
++ M I I +NA+S NL+MS GI +EF V+++ + S R R++ + +
Sbjct: 1166 NYFHIVAFMYIFNIPVNALSATNLVMSSGILIEFSVNVLKGYACSLRQRAKDRAESTVGS 1225
Query: 532 MGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGP 591
+G + SG +T + L A +I VY+F+++L ++ +H L+ LP++L+ FG
Sbjct: 1226 IGPIILSGPVVTMAGSTMFLSGAHLQIITVYFFKLFLITIVSSAVHALIILPILLA-FGG 1284
Query: 592 PSRHIIIEKQQADEPSTSSN 611
H + E ST+ N
Sbjct: 1285 SRGH------GSSETSTNDN 1298
>sp|P34389|NPC2_CAEEL Niemann-Pick C1 protein homolog 2 OS=Caenorhabditis elegans GN=ncr-2
PE=3 SV=2
Length = 1274
Score = 184 bits (467), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 169/658 (25%), Positives = 292/658 (44%), Gaps = 97/658 (14%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAV 79
V K+L+ +S V++ ++SV S+G FS GV +T + V+ F++ +G++ + +++
Sbjct: 620 VHHKLLISISAVMISVISVWCSIGMFSLFGVHATDNAIVVLFFVITCLGINRIFVIIRTF 679
Query: 80 KRQPMELVLET--------RISNALVEVGPSITLASL-SEFLAFAVGSFIP-----MPAC 125
+ L RISN + P + SL F G +P MPA
Sbjct: 680 QANGHCYGLPNISYREMNHRISNVMRRSIPIVLTNSLICSTCLFLAGGVLPYVSVSMPAV 739
Query: 126 RVFSMFAALAVLLD--FFLQVT----AFVALIEVH------------------------- 154
VF+ A LA+L+D F+L V + A E+
Sbjct: 740 EVFARHAGLAILMDTAFYLLVMLPLFQYDARREMSGKCEIWPWYELSNESKINLCMEAVD 799
Query: 155 --------------APILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSY 200
AP+L ++ + + F + + + +E G Q + SY
Sbjct: 800 GNLRSPVDWFKLAIAPLLLKKICRIWIATFFFVSLIIACYCTLCLEFGFNQVMAFSETSY 859
Query: 201 LQGYFDNTTEYLRVGPPLYFVVKDYNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPE 260
L +F N E L +GPPL+FVV+ + + N+ C+++ CD NS+ N+I +
Sbjct: 860 LTKHFQNMNENLNIGPPLWFVVEGDVKWHDPKMQNKFCTLAGCDDNSMGNKIRSLAYAEN 919
Query: 261 L--SYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVC 318
+Y+ WLD +L + P G C K +C P +
Sbjct: 920 YKGNYLHGDVNIWLDSYLQFMHPR--GSCCKMDGKQFCDPSNAT---------------- 961
Query: 319 KDCTTCFRHSDLVNNRPSTE-QFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGI 377
S V + +TE +F L FL PS CA GG +++L +G
Sbjct: 962 ---HCSSCSSSSVASLTTTEYEFYRNLHHFLETPPSIQCAHGGMALAKPAINLT--RNGK 1016
Query: 378 IQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLK-------INIFPYSVFYIFFEQ 430
IQ++ F TF LN L A F+ ++D ++ + ++ YS F+ ++EQ
Sbjct: 1017 IQSAYFSTFFKKLNLSDSI--QLYDAWRFAKYLADDIERELEIPGVKVYVYSTFFPYYEQ 1074
Query: 431 YLDI-WRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLN 489
YL + V + + V A + L + +L S + + VL+ + L+ M +LGI +N
Sbjct: 1075 YLTLSTTVYTLVVLVLFVAFVTISLFLRVNLAGSLVTVFVLLSSYLHLMEWMYLLGITVN 1134
Query: 490 AVSVVNLIMSIGIAVEFCVHIVHAFLVSHG-NRNQRSQKALSTMGASVFSGITLTKLVGV 548
VSV+N+ MS+GIAVEF ++H F S R +R+ AL + G++ SGI ++
Sbjct: 1135 VVSVINMAMSLGIAVEFFGQMLHGFYNSKKPKREERAFAALVSNGSTTLSGIFPAIMITA 1194
Query: 549 IVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPP-SRHIIIEKQQADE 605
L FA S + + Y+ + + ++ +HG+V++P +L++FG +++ E++ DE
Sbjct: 1195 GCLSFADSRVLITYFCNQLVGIGLVCAVHGVVYMPTLLAIFGSDFYQNVSSEEESTDE 1252
>sp|Q90693|PTC1_CHICK Protein patched homolog 1 OS=Gallus gallus GN=PTCH1 PE=1 SV=1
Length = 1442
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/214 (38%), Positives = 134/214 (62%), Gaps = 2/214 (0%)
Query: 378 IQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRV 437
I+ ++F + L + D+V ++ R + + +L I +P ++F+EQY+ +
Sbjct: 968 IEYAQFPFYLNGLRETSDFVEAIEKVRAICNNYT-SLGIASYPNGYPFLFWEQYIGLRHW 1026
Query: 438 ALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLI 497
L++I+V L F+VC L + W++ II+VVL ++ ++L G+M ++GI+L+AV VV LI
Sbjct: 1027 LLLSISVVLACTFLVCALFLLNPWTAGIIVVVLALMTVELFGMMGLIGIKLSAVPVVILI 1086
Query: 498 MSIGIAVEFCVHIVHAFLVSHGNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSE 557
S+GI VEF VHI AFL + G++N+R+ AL M A V G ++ L+GV++L + +
Sbjct: 1087 ASVGIGVEFTVHIALAFLTAIGDKNRRAVLALEHMFAPVLDG-AVSTLLGVLMLAGSEFD 1145
Query: 558 IFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGP 591
V Y+F + L I+G L+GLV LPV+LS FGP
Sbjct: 1146 FIVRYFFAVLAILTILGVLNGLVLLPVLLSFFGP 1179
Score = 85.9 bits (211), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 88/168 (52%), Gaps = 7/168 (4%)
Query: 21 SSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVK 80
S+ +GL+GV+LV LSV +G S IG+ +V+PFL L VGVD++ +L +A
Sbjct: 464 KSQGAVGLAGVLLVALSVAAGLGLCSLIGISFNAATTQVLPFLALGVGVDDVFLLAHAFS 523
Query: 81 R--QPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLL 138
Q + E R L G S+ L S+S AF + + IP+PA R FS+ AA+ V+
Sbjct: 524 ETGQNKRIPFEDRTGECLKRTGASVALTSISNVTAFFMAALIPIPALRAFSLQAAVVVVF 583
Query: 139 DFFLQVTAFVALIEVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIE 186
+F + + F A++ + L+ + + +F FT + +IE
Sbjct: 584 NFAMVLLIFPAILS-----MDLYRREDRRLDIFCCFTSPCVTRVIQIE 626
>sp|Q13635|PTC1_HUMAN Protein patched homolog 1 OS=Homo sapiens GN=PTCH1 PE=1 SV=2
Length = 1447
Score = 127 bits (318), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 133/214 (62%), Gaps = 2/214 (0%)
Query: 378 IQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRV 437
I+ ++F + L D+V ++ R S + +L ++ +P ++F+EQY+ +
Sbjct: 969 IEYAQFPFYLNGLRDTSDFVEAIEKVRTICSNYT-SLGLSSYPNGYPFLFWEQYIGLRHW 1027
Query: 438 ALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLI 497
L+ I+V L F+VC + + W++ II++VL ++ ++L G+M ++GI+L+AV VV LI
Sbjct: 1028 LLLFISVVLACTFLVCAVFLLNPWTAGIIVMVLALMTVELFGMMGLIGIKLSAVPVVILI 1087
Query: 498 MSIGIAVEFCVHIVHAFLVSHGNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSE 557
S+GI VEF VH+ AFL + G++N+R+ AL M A V G ++ L+GV++L + +
Sbjct: 1088 ASVGIGVEFTVHVALAFLTAIGDKNRRAVLALEHMFAPVLDG-AVSTLLGVLMLAGSEFD 1146
Query: 558 IFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGP 591
V Y+F + L I+G L+GLV LPV+LS FGP
Sbjct: 1147 FIVRYFFAVLAILTILGVLNGLVLLPVLLSFFGP 1180
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 89/168 (52%), Gaps = 7/168 (4%)
Query: 21 SSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVK 80
S+ +GL+GV+LV LSV +G S IG+ +V+PFL L VGVD++ +L +A
Sbjct: 464 KSQGAVGLAGVLLVALSVAAGLGLCSLIGISFNAATTQVLPFLALGVGVDDVFLLAHAFS 523
Query: 81 R--QPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLL 138
Q + E R L G S+ L S+S AF + + IP+PA R FS+ AA+ V+
Sbjct: 524 ETGQNKRIPFEDRTGECLKRTGASVALTSISNVTAFFMAALIPIPALRAFSLQAAVVVVF 583
Query: 139 DFFLQVTAFVALIEVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIE 186
+F + + F A++ + L+ + + +F FT ++ ++E
Sbjct: 584 NFAMVLLIFPAILS-----MDLYRREDRRLDIFCCFTSPCVSRVIQVE 626
>sp|Q61115|PTC1_MOUSE Protein patched homolog 1 OS=Mus musculus GN=Ptch1 PE=2 SV=1
Length = 1434
Score = 125 bits (314), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 133/214 (62%), Gaps = 2/214 (0%)
Query: 378 IQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRV 437
I+ ++F + L D+V ++ R + + +L ++ +P ++F+EQY+ +
Sbjct: 955 IEYAQFPFYLNGLRDTSDFVEAIEKVRVICNNYT-SLGLSSYPNGYPFLFWEQYISLRHW 1013
Query: 438 ALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLI 497
L++I+V L F+VC + + W++ II++VL ++ ++L G+M ++GI+L+AV VV LI
Sbjct: 1014 LLLSISVVLACTFLVCAVFLLNPWTAGIIVMVLALMTVELFGMMGLIGIKLSAVPVVILI 1073
Query: 498 MSIGIAVEFCVHIVHAFLVSHGNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSE 557
S+GI VEF VH+ AFL + G++N R+ AL M A V G ++ L+GV++L + +
Sbjct: 1074 ASVGIGVEFTVHVALAFLTAIGDKNHRAMLALEHMFAPVLDG-AVSTLLGVLMLAGSEFD 1132
Query: 558 IFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGP 591
V Y+F + L ++G L+GLV LPV+LS FGP
Sbjct: 1133 FIVRYFFAVLAILTVLGVLNGLVLLPVLLSFFGP 1166
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 89/168 (52%), Gaps = 7/168 (4%)
Query: 21 SSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVK 80
S+ +GL+GV+LV LSV +G S IG+ +V+PFL L VGVD++ +L +A
Sbjct: 450 KSQGAVGLAGVLLVALSVAAGLGLCSLIGISFNAATTQVLPFLALGVGVDDVFLLAHAFS 509
Query: 81 R--QPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLL 138
Q + E R L G S+ L S+S AF + + IP+PA R FS+ AA+ V+
Sbjct: 510 ETGQNKRIPFEDRTGECLKRTGASVALTSISNVTAFFMAALIPIPALRAFSLQAAVVVVF 569
Query: 139 DFFLQVTAFVALIEVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIE 186
+F + + F A++ + L+ + + +F FT ++ ++E
Sbjct: 570 NFAMVLLIFPAILS-----MDLYRREDRRLDIFCCFTSPCVSRVIQVE 612
>sp|O35595|PTC2_MOUSE Protein patched homolog 2 OS=Mus musculus GN=Ptch2 PE=2 SV=2
Length = 1182
Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 130/212 (61%), Gaps = 2/212 (0%)
Query: 390 LNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAI 449
L K D+V ++ AR + ++ +P ++F+EQYL + R L+ + + L
Sbjct: 917 LQKTADFVEAIEGARAACTEAGQA-GVHAYPSGSPFLFWEQYLGLRRCFLLAVCILLVCT 975
Query: 450 FIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVH 509
F+VC L+ S W++ +I++VL M+ ++L G+M LGI+L+A+ VV L+ SIGI VEF VH
Sbjct: 976 FLVCALLLLSPWTAGLIVLVLAMMTVELFGIMGFLGIKLSAIPVVILVASIGIGVEFTVH 1035
Query: 510 IVHAFLVSHGNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLA 569
+ FL SHG+RN R+ AL A V G ++ L+G+++L + + + Y+F +
Sbjct: 1036 VALGFLTSHGSRNLRAASALEQTFAPVTDG-AVSTLLGLLMLAGSNFDFIIRYFFVVLTV 1094
Query: 570 LVIIGFLHGLVFLPVILSLFGPPSRHIIIEKQ 601
L ++G LHGL+ LPV+LS+ GPP + + + K+
Sbjct: 1095 LTLLGLLHGLLLLPVLLSILGPPPQVVQVYKE 1126
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 77/134 (57%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAV 79
S+ +GL+GV+LV L+V +G + +G+ +V+PFL L +GVD++ +L +A
Sbjct: 419 AQSQGAVGLAGVLLVALAVASGLGLCALLGITFNAATTQVLPFLALGIGVDDIFLLAHAF 478
Query: 80 KRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLD 139
+ P + L R+ L G S+ L S++ +AF + + +P+PA R FS+ AA+ V +
Sbjct: 479 TKAPPDTPLPERMGECLRSTGTSVALTSVNNMVAFFMAALVPIPALRAFSLQAAIVVGCN 538
Query: 140 FFLQVTAFVALIEV 153
F + F A++ +
Sbjct: 539 FAAVMLVFPAILSL 552
>sp|Q09614|PTC1_CAEEL Protein patched homolog 1 OS=Caenorhabditis elegans GN=ptc-1 PE=1
SV=2
Length = 1408
Score = 123 bits (309), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 120/195 (61%), Gaps = 2/195 (1%)
Query: 397 VNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLM 456
V++++ R R +D N FP + + F+EQYL + + I++ ++F V ++
Sbjct: 1143 VDAIKDIRSVCERFTDQGLPN-FPQGIAFTFWEQYLFLTGNLMQAISIITISVFCVISVL 1201
Query: 457 TSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLV 516
+ W++ +++ +L ++ +L G M ++GI+LN VS V LI ++GI VEF VH+V +FL
Sbjct: 1202 LFNPWAALMVVCILGIMTCELAGFMGLVGIKLNPVSAVTLITAVGIGVEFTVHVVVSFLT 1261
Query: 517 SHGNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFL 576
+ G R+QR+ A+ + V G + + L+G+++L F+ E V Y+F + AL+ IG +
Sbjct: 1262 ALGTRSQRTSSAVDRVFVPVIHG-SFSTLLGILMLGFSEFEFVVKYFFIVMTALICIGII 1320
Query: 577 HGLVFLPVILSLFGP 591
+GL+ LPV+LS FGP
Sbjct: 1321 NGLILLPVLLSWFGP 1335
Score = 63.5 bits (153), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 71/134 (52%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAV 79
S + L L+GV++V + + +G + G++ +++PFL L +GVDNM +L++
Sbjct: 683 TESSMGLALAGVLVVTFASVAGLGLATWFGIEFNAATTQIVPFLTLGIGVDNMFMLLHNY 742
Query: 80 KRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLD 139
+ ++ + E G SI S++ L+F G+ +P+PA R F +++ + +
Sbjct: 743 RDVVKLAGGHAEMAILMRETGMSILCTSINNILSFLTGTLLPIPALRSFCAQSSILLTFN 802
Query: 140 FFLQVTAFVALIEV 153
F +T + A+I +
Sbjct: 803 FIAILTIYPAIISI 816
>sp|Q9Y6C5|PTC2_HUMAN Protein patched homolog 2 OS=Homo sapiens GN=PTCH2 PE=2 SV=2
Length = 1203
Score = 119 bits (299), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 128/215 (59%), Gaps = 2/215 (0%)
Query: 390 LNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAI 449
L K D+V ++ AR + ++ +P ++F+EQYL + R L+ + + L
Sbjct: 917 LQKTADFVEAIEGARAACAEAGQA-GVHAYPSGSPFLFWEQYLGLRRCFLLAVCILLVCT 975
Query: 450 FIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVH 509
F+VC L+ + W++ +I++VL M+ ++L G+M LGI+L+A+ VV L+ S+GI VEF VH
Sbjct: 976 FLVCALLLLNPWTAGLIVLVLAMMTVELFGIMGFLGIKLSAIPVVILVASVGIGVEFTVH 1035
Query: 510 IVHAFLVSHGNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLA 569
+ FL + G+RN R+ AL A V G ++ L+G+++L + + V Y+F
Sbjct: 1036 VALGFLTTQGSRNLRAAHALEHTFAPVTDG-AISTLLGLLMLAGSHFDFIVRYFFAALTV 1094
Query: 570 LVIIGFLHGLVFLPVILSLFGPPSRHIIIEKQQAD 604
L ++G LHGLV LPV+LS+ GPP I + K+ +
Sbjct: 1095 LTLLGLLHGLVLLPVLLSILGPPPEVIQMYKESPE 1129
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 73/134 (54%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAV 79
S+ +GL+GV+LV L+V +G + +G+ +V+PFL L +GVD++ +L +A
Sbjct: 419 AQSQGSVGLAGVLLVALAVASGLGLCALLGITFNAATTQVLPFLALGIGVDDVFLLAHAF 478
Query: 80 KRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLD 139
L+ R+ L G S+ L S++ AF + + +P+PA R FS+ AA+ V
Sbjct: 479 TEALPGTPLQERMGECLQRTGTSVVLTSINNMAAFLMAALVPIPALRAFSLQAAIVVGCT 538
Query: 140 FFLQVTAFVALIEV 153
F + F A++ +
Sbjct: 539 FVAVMLVFPAILSL 552
>sp|Q98864|PTC1_DANRE Protein patched homolog 1 OS=Danio rerio GN=ptch1 PE=2 SV=1
Length = 1220
Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 125/208 (60%), Gaps = 10/208 (4%)
Query: 396 YVNSLRAAREFSSRMSDTLKI---------NIFPYSVFYIFFEQYLDIWRVALINIAVAL 446
Y+N LR A +F + I +P ++F+EQY+ + L++I+V L
Sbjct: 966 YLNGLRQASDFIEAIESVRTICEEFMRQGIKNYPNGYPFLFWEQYIGLRHWFLLSISVVL 1025
Query: 447 GAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEF 506
F+VC ++ + W++ +I+ +L M+ ++L G+M ++GI+L+A+ VV LI S+GI VEF
Sbjct: 1026 ACTFLVCAILLLNPWTAGVIVFILPMMTVELFGIMGLIGIKLSAIPVVILIASVGIGVEF 1085
Query: 507 CVHIVHAFLVSHGNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQM 566
VHI FL + G+RN RS A+ M A V G ++ L+GV++L + + + Y+F +
Sbjct: 1086 TVHIALGFLTAIGDRNTRSAVAMEHMFAPVIDG-AISTLLGVLMLAGSEFDFIMRYFFAV 1144
Query: 567 YLALVIIGFLHGLVFLPVILSLFGPPSR 594
L ++G L+GLV LPV+LSL GPP+
Sbjct: 1145 LAILTLLGILNGLVLLPVLLSLMGPPAE 1172
Score = 69.3 bits (168), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 76/134 (56%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAV 79
S+ +GL+GV+LV LSV +G S +G+ +V+P L L +GVD+M +L ++
Sbjct: 446 AKSQGAVGLAGVLLVALSVAAGLGLCSLLGLSFNAATTQVLPSLALGIGVDDMFLLGHSF 505
Query: 80 KRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLD 139
+ + R + L G S+ L S++ +AF + + +P+PA R FS+ AA+ V+ +
Sbjct: 506 TETRSNIPFKERTGDCLRRTGTSVALTSVNNMIAFFMAALVPIPALRAFSLQAAVVVVFN 565
Query: 140 FFLQVTAFVALIEV 153
F + + F A++ +
Sbjct: 566 FAMALLIFPAILSL 579
>sp|Q0EEE2|PTHD3_MOUSE Patched domain-containing protein 3 OS=Mus musculus GN=Ptchd3 PE=1
SV=1
Length = 906
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 105/181 (58%), Gaps = 3/181 (1%)
Query: 410 MSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVV 469
+++ ++ + Y+ +I+F+QY I + N+ +A A+FIV LL+ S +
Sbjct: 728 IAENCEVPLMVYNQAFIYFDQYAAIIENTVRNVMIASTAMFIVSLLLIPHPVCSLWVTFA 787
Query: 470 LVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVS-HGNRNQRSQKA 528
+ +++ + G MA + L+++S++NL++ IG + +F HI +AF+ S + N++S +A
Sbjct: 788 IASVIVGVTGFMAFWNVNLDSISMINLVICIGFSFDFSAHISYAFVSSTEPSVNKKSIEA 847
Query: 529 LSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSL 588
L +G V ++ ++GV VL A++ IF ++ M+L + G HGL+F+PV L+
Sbjct: 848 LYLLGYPVLQS-AISTIIGVCVLSAAKAYIFRTFFKIMFLVM-FFGAAHGLIFIPVFLTF 905
Query: 589 F 589
F
Sbjct: 906 F 906
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/286 (22%), Positives = 126/286 (44%), Gaps = 56/286 (19%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAV 79
+ +K+ + + GV V +SV+ G +GV +I+ PFL+L VGVD+M I+++A
Sbjct: 364 IRNKMCVAVFGVFSVAMSVVSGFGLMLHLGVPFVIIVANS-PFLILGVGVDDMFIMISAW 422
Query: 80 KRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLD 139
++ + + R+SN+ +V SIT+ +++ LAF G + + F ++ +L
Sbjct: 423 QKTSLSESIRERLSNSYSKVAVSITITTITNVLAFYTGITSSFRSVQYFCIYTGTTLLFC 482
Query: 140 FFLQVTAFVA------------------------------------LIEVH--------- 154
+F +T F A LI+ H
Sbjct: 483 YFYSITCFGAVMALDGKREVAWSRWLEKPDQKYSSLKKSCCVPFGSLIDKHGEDNHPMNL 542
Query: 155 ------APILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNT 208
P L K +VV +++ + ++SI +++ GL+ + + DSY+ YF+
Sbjct: 543 FFRDYFGPFLTTSKAKFIVVLLYIFYIISSIYGCFQVQEGLDLRNLASDDSYITPYFNVE 602
Query: 209 TEYLR-VGPPLYFVVKD-YNY-SSESRHTNQLCSISQCDSNSLLNE 251
+Y GP + +V + NY ++ R C ++Q + N +++
Sbjct: 603 EDYFSDYGPRVMVIVTESVNYWDNDVRQKLDKC-MTQFEENEYVDK 647
>sp|Q03602|PTR9_CAEEL Patched-related protein 9 OS=Caenorhabditis elegans GN=ptr-9 PE=3
SV=2
Length = 844
Score = 82.8 bits (203), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 127/271 (46%), Gaps = 21/271 (7%)
Query: 336 STEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGD 395
S F ++L FL AK H + D+ G I+A + L K D
Sbjct: 582 SESDFSDELHTFL--------AKEPHLKFRN--DIRFTMMGKIEAMKMMFRVRKLGKDND 631
Query: 396 YVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLL 455
+ RA E+ ++ + + N F Y ++ +Q + ++++ A+ + +C+L
Sbjct: 632 ---APRA--EYMRKVMENSQFNGFVYDTSFLLVDQQMTTVYNVIVDVVSAILTMLSICVL 686
Query: 456 MTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFL 515
M S+ I ++ + I ++G +A +L+ +S++ ++MS+G +V++ H F+
Sbjct: 687 MVPRPVSAMCIAFAILSVNIGVIGALAATNTRLDIISMITIVMSVGFSVDYVTHTTFHFV 746
Query: 516 VSHGNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGF 575
+ R+ R +K L M + L+ +GV +L F S I V + +V +G
Sbjct: 747 I---QRDNRLEKCLLVMTEPILQS-ALSTAIGVSLLSFVHSYI-VRTFVNTVFFVVGLGI 801
Query: 576 LHGLVFLPVILSLFGPPSRHII-IEKQQADE 605
LHGL+FLPV+L P S +++ E Q DE
Sbjct: 802 LHGLIFLPVLLDTIVPDSEYMVPYEPQHEDE 832
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 57/95 (60%)
Query: 59 VIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGS 118
++PFLV+++G DNM +++ + + E R +AL E S+ L SL++ L+FA+GS
Sbjct: 327 IMPFLVVSIGTDNMFLMLKSWRMTKKSSNEEQRYIHALTESAASLFLTSLTDGLSFAIGS 386
Query: 119 FIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEV 153
A RVF + A+A+L F QVT F A++ +
Sbjct: 387 ISDFHAVRVFCTYCAMAILFMFLFQVTFFNAVMSL 421
>sp|Q6GQT6|SCAP_MOUSE Sterol regulatory element-binding protein cleavage-activating
protein OS=Mus musculus GN=Scap PE=1 SV=1
Length = 1276
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 77/134 (57%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAV 79
V SK L L+ V+ V+ S+L SVG + G+ TL E+ P+LV+ +G++N+ +L +V
Sbjct: 309 VKSKWGLALAAVVTVLSSLLMSVGLCTLFGLTPTLNGGEIFPYLVVVIGLENVLVLTKSV 368
Query: 80 KRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLD 139
P++L ++ RI+ L SI + +E +G F +PA + F +FA + ++ D
Sbjct: 369 VSTPVDLEVKLRIAQGLSSESWSIMKNAATELGIILIGYFTLVPAIQEFCLFAVVGLVSD 428
Query: 140 FFLQVTAFVALIEV 153
FFLQ+ F ++ +
Sbjct: 429 FFLQMLFFTTVLSI 442
>sp|P18502|PTC_DROME Protein patched OS=Drosophila melanogaster GN=ptc PE=2 SV=2
Length = 1286
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 108/194 (55%), Gaps = 3/194 (1%)
Query: 419 FPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLL 478
+P + +IF+EQY+ + + +A L A ++ L+ S+W++ ++++ ++ + +
Sbjct: 937 YPSGIPFIFWEQYMTLRSSLAMILACVLLAALVLVSLLLLSVWAAVLVILSVLASLAQIF 996
Query: 479 GVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVSHGNRNQRSQKALSTMGASVFS 538
G M +LGI+L+A+ V LI+S+G+ + F V I F+ S GNR +R Q ++ +
Sbjct: 997 GAMTLLGIKLSAIPAVILILSVGMMLCFNVLISLGFMTSVGNRQRRVQLSMQMSLGPLVH 1056
Query: 539 GITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPSRHIII 598
G+ LT V V +L + E + ++ + L ++ +G + L+ P++LS+ GP + + +
Sbjct: 1057 GM-LTSGVAVFMLSTSPFEFVIRHFCWLLLVVLCVGACNSLLVFPILLSMVGPEAELVPL 1115
Query: 599 EKQQADEPSTSSNL 612
E D ST S L
Sbjct: 1116 E--HPDRISTPSPL 1127
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 75/138 (54%), Gaps = 12/138 (8%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAV 79
V + +G++GV+L+ S +G + +G+ +V+PFL L +GVD++ +L A
Sbjct: 454 VRGQSSVGVAGVLLMCFSTAAGLGLSALLGIVFNAASTQVVPFLALGLGVDHIFMLTAAY 513
Query: 80 ----KRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALA 135
+R+ +L+L+ +VGPSI ++ S +F +FIP+PA +VF + AA+
Sbjct: 514 AESNRREQTKLILK--------KVGPSILFSACSTAGSFFAAAFIPVPALKVFCLQAAIV 565
Query: 136 VLLDFFLQVTAFVALIEV 153
+ + + F A+I +
Sbjct: 566 MCSNLAAALLVFPAMISL 583
Score = 33.9 bits (76), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 137 LLDFFLQVTAFVALIEVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLP 196
L F L AF + + P L VK + V FLA ++S+ STR++ GL+ ++P
Sbjct: 657 LASFSLATFAF----QHYTPFLMRSWVKFLTVMGFLAALISSLYASTRLQDGLDIIDLVP 712
Query: 197 RDSYLQGYFDNTTE 210
+DS + D T
Sbjct: 713 KDSNEHKFLDAQTR 726
>sp|Q5MNU5|SCAP_PIG Sterol regulatory element-binding protein cleavage-activating
protein OS=Sus scrofa GN=SCAP PE=2 SV=2
Length = 1279
Score = 73.9 bits (180), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 76/134 (56%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAV 79
V SK L L+ V+ V+ S+L SVG + G+ TL E+ P+LV+ +G++N+ +L +V
Sbjct: 309 VKSKWGLALAAVVTVLSSLLMSVGLCTLFGLTPTLNGGEIFPYLVVVIGLENVLVLTKSV 368
Query: 80 KRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLD 139
P++L ++ RI+ L SI +E +G F +PA + F +FA + ++ D
Sbjct: 369 VSTPVDLEVKLRIAQGLSSESWSIMKNMATELGIILIGYFTLVPAIQEFCLFAVVGLVSD 428
Query: 140 FFLQVTAFVALIEV 153
FFLQ+ F ++ +
Sbjct: 429 FFLQMPFFTTVLSI 442
>sp|A2RRU4|SCAP_RAT Sterol regulatory element-binding protein cleavage-activating
protein OS=Rattus norvegicus GN=Scap PE=2 SV=1
Length = 1276
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 76/134 (56%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAV 79
V SK L L+ V+ V+ S+L SVG + G+ TL E+ P+LV+ +G++N+ +L +V
Sbjct: 309 VKSKWGLALAAVVTVLSSLLMSVGLCTLFGLTPTLNGGEIFPYLVVVIGLENVLVLTKSV 368
Query: 80 KRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLD 139
P++L ++ RI+ L SI +E +G F +PA + F +FA + ++ D
Sbjct: 369 VSTPVDLEVKLRIAQGLSSESWSIMKNVATELGIILIGYFTLVPAIQEFCLFAVVGLVSD 428
Query: 140 FFLQVTAFVALIEV 153
FFLQ+ F ++ +
Sbjct: 429 FFLQMLFFTTVLSI 442
>sp|Q12770|SCAP_HUMAN Sterol regulatory element-binding protein cleavage-activating
protein OS=Homo sapiens GN=SCAP PE=1 SV=4
Length = 1279
Score = 73.6 bits (179), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 76/134 (56%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAV 79
V SK L L+ V+ V+ S+L SVG + G+ TL E+ P+LV+ +G++N+ +L +V
Sbjct: 309 VKSKWGLALAAVVTVLSSLLMSVGLCTLFGLTPTLNGGEIFPYLVVVIGLENVLVLTKSV 368
Query: 80 KRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLD 139
P++L ++ RI+ L SI +E +G F +PA + F +FA + ++ D
Sbjct: 369 VSTPVDLEVKLRIAQGLSSESWSIMKNMATELGIILIGYFTLVPAIQEFCLFAVVGLVSD 428
Query: 140 FFLQVTAFVALIEV 153
FFLQ+ F ++ +
Sbjct: 429 FFLQMLFFTTVLSI 442
>sp|A6QM06|SCAP_BOVIN Sterol regulatory element-binding protein cleavage-activating
protein OS=Bos taurus GN=SCAP PE=2 SV=1
Length = 1278
Score = 73.2 bits (178), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 76/134 (56%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAV 79
V SK L L+ V+ V+ S+L SVG + G+ TL E+ P+LV+ +G++N+ +L +V
Sbjct: 309 VKSKWGLALAAVVTVLSSLLMSVGLCTLFGLTPTLNGGEIFPYLVVVIGLENVLVLTKSV 368
Query: 80 KRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLD 139
P++L ++ RI+ L SI +E +G F +PA + F +FA + ++ D
Sbjct: 369 VSTPVDLEVKLRIAQGLSSESWSIMKNMATELGIVLIGYFTLVPAIQEFCLFAVVGLVSD 428
Query: 140 FFLQVTAFVALIEV 153
FFLQ+ F ++ +
Sbjct: 429 FFLQMLFFTTVLSI 442
>sp|P97260|SCAP_CRIGR Sterol regulatory element-binding protein cleavage-activating
protein OS=Cricetulus griseus GN=SCAP PE=1 SV=1
Length = 1276
Score = 72.8 bits (177), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 76/134 (56%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAV 79
V SK L L+ V+ V+ S+L SVG + G+ TL E+ P+LV+ +G++N+ +L +V
Sbjct: 309 VKSKWGLALAAVVTVLSSLLMSVGLCTLFGLTPTLNGGEIFPYLVVVIGLENVLVLTKSV 368
Query: 80 KRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLD 139
P++L ++ RI+ L SI +E +G F +PA + F +FA + ++ D
Sbjct: 369 VSTPVDLEVKLRIAQGLSSESWSIMKNVATELGIILIGYFTLVPAIQEFCLFAVVGLVSD 428
Query: 140 FFLQVTAFVALIEV 153
FFLQ+ F ++ +
Sbjct: 429 FFLQMFFFTTVLSI 442
>sp|A0JPH4|SCAP_XENLA Sterol regulatory element-binding protein cleavage-activating
protein OS=Xenopus laevis GN=scap PE=2 SV=1
Length = 1311
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 75/134 (55%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAV 79
V SK L L+ V+ V+ S+L SVG + G+ TL E+ P+LV+ +G++N+ +L +V
Sbjct: 307 VKSKWGLALAAVVTVLSSLLMSVGLCTLFGLTPTLNGGEIFPYLVVVIGLENVLVLTKSV 366
Query: 80 KRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLD 139
P++L ++ RI+ L I +E +G F +PA + F +FA + ++ D
Sbjct: 367 VSTPVDLEVKLRIAQGLRNESWFIMKNMATELGIILIGYFTLVPAIQEFCLFAVVGLVSD 426
Query: 140 FFLQVTAFVALIEV 153
FFLQ+ F ++ +
Sbjct: 427 FFLQMFFFTTVLSI 440
>sp|Q3KNS1|PTHD3_HUMAN Patched domain-containing protein 3 OS=Homo sapiens GN=PTCHD3 PE=1
SV=3
Length = 767
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/275 (21%), Positives = 112/275 (40%), Gaps = 57/275 (20%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAV 79
+ +K+ + GVI L+V+ G IGV +I+ PFL+L VGVD+M I+++A
Sbjct: 408 IRNKMCVAAFGVISAFLAVVSGFGLLLHIGVPFVIIVANS-PFLILGVGVDDMFIMISAW 466
Query: 80 KRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLD 139
+ + + R+SN + SIT+ +++ LA G + + F ++ + +L
Sbjct: 467 HKTNLADDIRERMSNVYSKAAVSITITTITNILALYTGIMSSFRSVQCFCIYTGMTLLFC 526
Query: 140 FFLQVTAFVALI-----------------------------------------EVH---- 154
+F +T F A + ++H
Sbjct: 527 YFYNITCFGAFMALDGKREVVCLCWLKKADPKWPSFKKFCCFPFGSVPDEHGTDIHPISL 586
Query: 155 ------APILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNT 208
P L K VV +++ + ++SI ++ GL+ + + DSY+ YF+
Sbjct: 587 FFRDYFGPFLTRSESKYFVVFIYVLYIISSIYGCFHVQEGLDLRNLASDDSYITPYFNVE 646
Query: 209 TEYL-RVGPPLYFVVK---DYNYSSESRHTNQLCS 239
Y GP + +V DY + + R + C+
Sbjct: 647 ENYFSDYGPRVMVIVTKKVDY-WDKDVRQKLENCT 680
>sp|B9EKX1|PTHD4_MOUSE Patched domain-containing protein 4 OS=Mus musculus GN=Ptchd4 PE=2
SV=2
Length = 904
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 108/224 (48%), Gaps = 10/224 (4%)
Query: 372 GYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQY 431
G E+ II + + T +KQ + + L R S +S +++ +F S ++F + Y
Sbjct: 656 GDENNIIASRLYLVARTSRDKQKEVIEVLDKLRPLS--LSKSIRFIVFNPS--FVFTDHY 711
Query: 432 -LDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNA 490
L + LI L + + L+ L + +IL V I + +LG+M + + ++
Sbjct: 712 SLSVTVPVLIAGFGVLLVLILTFFLVIHPLGNFWLILSV-TSIELGVLGLMTLWNVDMDC 770
Query: 491 VSVVNLIMSIGIAVEFCVHIVHAF-LVSHGNRNQRSQKALSTMGASVFSGITLTKLVGVI 549
+S++ LI ++ A++ C +++ F L + R Q + +L G ++ IT + L+G++
Sbjct: 771 ISILCLIYTLNFAIDHCAPLLYTFVLATEHTRTQCIKSSLQEHGTAILQNIT-SFLIGLL 829
Query: 550 VLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPS 593
L F S + F+ L LH V LPV L+ F PPS
Sbjct: 830 PLLFVPSNL-TFTLFKCLLLTGGCTLLHCFVILPVFLTFF-PPS 871
Score = 49.7 bits (117), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 63/124 (50%), Gaps = 3/124 (2%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAV 79
+ SK LGL GV+ V +S+ + G F K ++ IPF + G + L++
Sbjct: 316 LRSKPFLGLLGVLTVCISIATAAGIFFITDGKYNSTLLG-IPFFAMGHGTKGVFELLSGW 374
Query: 80 KRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGS--FIPMPACRVFSMFAALAVL 137
+R L + R+++A +V + T+ S F+ F +G+ F + A ++F +++L
Sbjct: 375 RRTKENLPFKDRVADAYSDVMVTYTMTSSLYFITFGMGASPFTNIEAVKIFCQNMCVSIL 434
Query: 138 LDFF 141
L++F
Sbjct: 435 LNYF 438
>sp|Q6ZW05|PTHD4_HUMAN Patched domain-containing protein 4 OS=Homo sapiens GN=PTCHD4 PE=2
SV=3
Length = 846
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 106/224 (47%), Gaps = 10/224 (4%)
Query: 372 GYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQY 431
G ES II + + T +KQ + L R S +S +++ +F S ++F + Y
Sbjct: 598 GDESNIIASRLYLVARTSRDKQKEITEVLEKLRPLS--LSKSIRFIVFNPS--FVFMDHY 653
Query: 432 -LDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNA 490
L + LI L + + L+ L + +IL V I + +LG+M + + ++
Sbjct: 654 SLSVTVPVLIAGFGVLLVLILTFFLVIHPLGNFWLILSV-TSIELGVLGLMTLWNVDMDC 712
Query: 491 VSVVNLIMSIGIAVEFCVHIVHAF-LVSHGNRNQRSQKALSTMGASVFSGITLTKLVGVI 549
+S++ LI ++ A++ C ++ F L + R Q + +L G ++ +T + L+G++
Sbjct: 713 ISILCLIYTLNFAIDHCAPLLFTFVLATEHTRTQCIKSSLQDHGTAILQNVT-SFLIGLV 771
Query: 550 VLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPS 593
L F S + F+ L LH V LPV L+ F PPS
Sbjct: 772 PLLFVPSNL-TFTLFKCLLLTGGCTLLHCFVILPVFLTFF-PPS 813
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 64/124 (51%), Gaps = 3/124 (2%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAV 79
+ SK LGL GV+ V +S++ + G F K ++ IPF + G + L++
Sbjct: 258 LRSKPFLGLLGVLTVCISIITAAGIFFITDGKYNSTLLG-IPFFAMGHGTKGVFELLSGW 316
Query: 80 KRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGS--FIPMPACRVFSMFAALAVL 137
+R L + RI++A +V + T+ S F+ F +G+ F + A +VF +++L
Sbjct: 317 RRTKENLPFKDRIADAYSDVMVTYTMTSSLYFITFGMGASPFTNIEAVKVFCQNMCVSIL 376
Query: 138 LDFF 141
L++F
Sbjct: 377 LNYF 380
>sp|Q5RIV7|PTHD1_DANRE Patched domain-containing protein 1 OS=Danio rerio GN=ptchd1 PE=3
SV=1
Length = 897
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 105/224 (46%), Gaps = 8/224 (3%)
Query: 371 NGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQ 430
NG E II + + T + + V L R S + +++K +F + ++F ++
Sbjct: 638 NGAEYDIIASKMYLVARTTEKTREEVVELLERLRPLS--LINSIKFIVFNPT--FVFMDR 693
Query: 431 YLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNA 490
Y ++ ++ I I+ + + + +++ + + + +LG+M + + +++
Sbjct: 694 YSSSIISPILTSGFSVLTILILTFFLVINPLGNFWLILTVTSVELGVLGLMTLWNVDMDS 753
Query: 491 VSVVNLIMSIGIAVEFCVHIVHAF-LVSHGNRNQRSQKALSTMGASVFSGITLTKLVGVI 549
+S++ LI ++ A++ C ++ F L + R Q + +L GA++ T ++G++
Sbjct: 754 ISILCLIYTLNFAMDHCAPHLYTFVLATEHTRTQCIKISLEEHGAAILQN-TSCFVIGIM 812
Query: 550 VLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPS 593
L F S + F+ L LH V LPV L+ F PPS
Sbjct: 813 PLLFVPSNL-TYTLFKCSLLTAGCTVLHCFVILPVFLTFF-PPS 854
Score = 40.4 bits (93), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 14/143 (9%)
Query: 3 AYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVG--FFSAIGVKSTLIIMEVI 60
A IS ++ D R K LGL GV+ + ++ + + G F S STL+ I
Sbjct: 289 ATISSSMRDCLR-------GKPFLGLLGVLTICIANVTAAGIFFISDGKFNSTLL---GI 338
Query: 61 PFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGS-- 118
PF + G + L+ +R L + R+++A +V T+ S + F +G+
Sbjct: 339 PFFAMGHGTKGVFELLAGWRRTRESLPFKERVADAFADVMVCYTMTSSLYIITFGMGASP 398
Query: 119 FIPMPACRVFSMFAALAVLLDFF 141
F + + +VF +AVL+++F
Sbjct: 399 FTNIESVKVFCQSMCVAVLVNYF 421
>sp|Q96NR3|PTHD1_HUMAN Patched domain-containing protein 1 OS=Homo sapiens GN=PTCHD1 PE=2
SV=2
Length = 888
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 95/211 (45%), Gaps = 11/211 (5%)
Query: 384 RTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIA 443
+T T + D + +LR R+S T K+ ++ +++ ++Y L N
Sbjct: 652 KTMETNREELYDLLETLR-------RLSVTSKVKFIVFNPSFVYMDRYASSLGAPLHNSC 704
Query: 444 VALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIA 503
++ + + + + I + +V + ++G M + ++L+ +SV+ LI I
Sbjct: 705 ISALFLLFFSAFLVADSLINVWITLTVVSVEFGVIGFMTLWKVELDCISVLCLIYGINYT 764
Query: 504 VEFCVHIVHAFLVSHG-NRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVY 562
++ C ++ F++ R + + AL G ++ L +VG+I L S +
Sbjct: 765 IDNCAPMLSTFVLGKDFTRTKWVKNALEVHGVAILQSY-LCYIVGLIPLAAVPSNLTCTL 823
Query: 563 YFQMYLALVIIGFLHGLVFLPVILSLFGPPS 593
+ ++L + + F H LPVIL+ F PPS
Sbjct: 824 FRCLFL-IAFVTFFHCFAILPVILT-FLPPS 852
>sp|Q14B62|PTHD1_MOUSE Patched domain-containing protein 1 OS=Mus musculus GN=Ptchd1 PE=2
SV=2
Length = 888
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 94/211 (44%), Gaps = 11/211 (5%)
Query: 384 RTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIA 443
+T T + D + +LR R+S T K+ ++ +++ ++Y L N
Sbjct: 652 KTMETNREELYDLLETLR-------RLSVTSKVKFIVFNPSFVYMDRYASSLGAPLHNSC 704
Query: 444 VALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIA 503
++ + + + + I + +V + ++G M + ++L+ +SV+ LI I
Sbjct: 705 ISALFLLFFSAFLVADSLINVWITLTVVSVEFGVIGFMTLWKVELDCISVLCLIYGINYT 764
Query: 504 VEFCVHIVHAFLVSHG-NRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVY 562
++ C ++ F++ R + + AL G ++ L +VG+ L S +
Sbjct: 765 IDNCAPLLSTFVLGKDFTRTKWVKNALEVHGVAILQSY-LCYIVGLFPLAAVPSNLTCTL 823
Query: 563 YFQMYLALVIIGFLHGLVFLPVILSLFGPPS 593
+ ++L + + F H LPVIL+ F PPS
Sbjct: 824 FRCLFL-IAFVTFFHCFAILPVILT-FLPPS 852
>sp|Q6R5J2|DISP1_DANRE Protein dispatched homolog 1 OS=Danio rerio GN=disp1 PE=2 SV=1
Length = 1464
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 76/156 (48%), Gaps = 5/156 (3%)
Query: 438 ALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLI 497
LI +A+++ F V LL T ++ S ++ + + +G + +LG +LN + V +
Sbjct: 966 TLIAMALSVVVAFSVMLLTTWNIIISLYAIISIAGTIFVTVGSLVLLGWELNVLESVTIS 1025
Query: 498 MSIGIAVEFCVHIVHAF-LVSHGNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARS 556
+++G++V+F VH A+ L +R + +LS MG+++ T + G +++ S
Sbjct: 1026 VAVGLSVDFAVHYGVAYRLAPEPDREGKVVFSLSRMGSAIAMAALTTFVAGAMMM---PS 1082
Query: 557 EIFVVYYFQMYLALVI-IGFLHGLVFLPVILSLFGP 591
+ +L L++ I + F + L GP
Sbjct: 1083 TVLAYTQLGTFLMLIMCISWAFATFFFQCMCRLLGP 1118
>sp|A3KFU9|PTHD2_MOUSE Patched domain-containing protein 2 OS=Mus musculus GN=Ptchd2 PE=2
SV=1
Length = 1347
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 80/180 (44%), Gaps = 15/180 (8%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAI-GVKSTLIIMEVIPFLVLAVGVDNMCILVNA 78
S V L G+ + LS L ++ + + G++ I+ V F+++ +GVD++ + +N
Sbjct: 436 TSCSVFLSFFGIASIGLSCLVALFLYHVVFGIQYLGILNGVAAFVIVGIGVDDVFVFINT 495
Query: 79 VKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLL 138
++ + R+ + + G + SL+ A+A F +PA F +F +L V
Sbjct: 496 YRQATHLEDPQLRMIHTIQTAGKATFFTSLTTAAAYAANVFSQIPAVHDFGLFMSLIV-- 553
Query: 139 DFFLQVTAFVALIEVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRD 198
++A++ LGLW S+++A +S S + G + + P D
Sbjct: 554 -----TCCWLAVLFTMPAALGLW-------SLYMAPLESSCQNSCHQKCGRKSSLHFPGD 601
Score = 37.7 bits (86), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 49/93 (52%), Gaps = 13/93 (13%)
Query: 473 IVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVSHGN------------ 520
IV ++ +M G ++ AV ++L + +G +V++CVH+V +L++ N
Sbjct: 1173 IVCLVVTIMYWSGWEMGAVEAISLSILVGSSVDYCVHLVEGYLLAGENLPPQLSQDPSSQ 1232
Query: 521 RNQRSQKALSTMGASVFSGITLTKLVGVIVLCF 553
R R+ +A+ +G ++ S LT ++ + L F
Sbjct: 1233 RQWRTLEAVRHVGVAIVSS-ALTTVIATVPLFF 1264
>sp|Q9VNJ5|DISP_DROME Protein dispatched OS=Drosophila melanogaster GN=disp PE=1 SV=1
Length = 1218
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 78/164 (47%), Gaps = 7/164 (4%)
Query: 438 ALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLI 497
+ I +A+ A V L T ++ S ++ + + + + + V+ +LG QLN + + +
Sbjct: 963 TFVAICLAMAASLAVLLCFTVNILISIYAVLTVSLSIFNTVAVLILLGWQLNILESIAVS 1022
Query: 498 MSIGIAVEFCVHI-VHAFLVSHGNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARS 556
+IG+AV+F +H +H + R +Q LS + T T L G I++ S
Sbjct: 1023 TAIGLAVDFSLHYGIHYRMSPVKERLAATQFVLSRIIGPTVMAATTTGLAGGIMMA---S 1079
Query: 557 EIFVVYYFQMYLALV-IIGFLHGLVFLPVILSLFGPPSRHIIIE 599
I ++L +V I+ + + FL +L + GP +H +E
Sbjct: 1080 NILPYIQIGVFLVVVMIVSWFYATFFLMSLLRVAGP--QHGFLE 1121
>sp|Q3TDN0|DISP1_MOUSE Protein dispatched homolog 1 OS=Mus musculus GN=Disp1 PE=1 SV=2
Length = 1521
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 61/114 (53%), Gaps = 1/114 (0%)
Query: 439 LINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIM 498
LI + +++ F V LL T ++ S +V + + +G + +LG +LN + V + +
Sbjct: 983 LIAMGLSVAVAFSVMLLTTWNIIISLYAIVSIAGTIFVTVGSLVLLGWELNVLESVTISV 1042
Query: 499 SIGIAVEFCVHIVHAF-LVSHGNRNQRSQKALSTMGASVFSGITLTKLVGVIVL 551
++G++V+F VH A+ L +R + +LS MG+++ T + G +++
Sbjct: 1043 AVGLSVDFAVHYGVAYRLAPDPDREGKVIFSLSRMGSAIAMAALTTFVAGAMMM 1096
>sp|Q9P2K9|PTHD2_HUMAN Patched domain-containing protein 2 OS=Homo sapiens GN=PTCHD2 PE=2
SV=2
Length = 1392
Score = 40.8 bits (94), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 78/180 (43%), Gaps = 15/180 (8%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAI-GVKSTLIIMEVIPFLVLAVGVDNMCILVNA 78
S V L G+ + LS L ++ + + G++ I+ V F+++ +GVD++ + +N
Sbjct: 481 TSCSVFLSFFGIASIGLSCLVALFLYHVVFGIQYLGILNGVAAFVIVGIGVDDVFVFINT 540
Query: 79 VKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLL 138
++ + R+ + + G + SL+ A+A F +PA F +F +L V
Sbjct: 541 YRQATHLEDPQLRMIHTVQTAGKATFFTSLTTAAAYAANVFSQIPAVHDFGLFMSLIV-- 598
Query: 139 DFFLQVTAFVALIEVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRD 198
++A++ LGLW S++LA +S S + + P D
Sbjct: 599 -----SCCWLAVLVTMPAALGLW-------SLYLAPLESSCQTSCHQNCSRKTSLHFPGD 646
Score = 39.7 bits (91), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 11/92 (11%)
Query: 473 IVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVS------HGNRNQRSQ 526
IV ++ +M G ++ AV ++L + +G +V++CVH+V +L++ H + R+Q
Sbjct: 1218 IVCLVVTIMYWSGWEMGAVEAISLSILVGSSVDYCVHLVEGYLLAGENLPPHQAEDARTQ 1277
Query: 527 KALSTMGASVFSGI-----TLTKLVGVIVLCF 553
+ T+ A G+ LT ++ + L F
Sbjct: 1278 RQWRTLEAVRHVGVAIVSSALTTVIATVPLFF 1309
>sp|P16393|HMDH_STRPU 3-hydroxy-3-methylglutaryl-coenzyme A reductase
OS=Strongylocentrotus purpuratus GN=HMGCR PE=2 SV=2
Length = 932
Score = 40.0 bits (92), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 62/128 (48%), Gaps = 1/128 (0%)
Query: 22 SKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKR 81
SK +LG++G+ + S L S G++ T + E +PF +L + + L
Sbjct: 89 SKYILGIAGLFTIFSSFLFSSAVIHLFGLELT-GLNEALPFFLLLIDLTKASALTKFALS 147
Query: 82 QPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFF 141
+ + I+ + +GP+ITL ++ L ++G+ + VF F L+++ ++F
Sbjct: 148 STTQNEVVDNIARGMAILGPTITLDTVVTTLVISIGTMSSIRKMEVFCCFGILSLIANYF 207
Query: 142 LQVTAFVA 149
+ +T F A
Sbjct: 208 VFMTFFPA 215
>sp|P14773|HMDH_DROME 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Drosophila
melanogaster GN=Hmgcr PE=2 SV=2
Length = 920
Score = 39.3 bits (90), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 76/156 (48%), Gaps = 3/156 (1%)
Query: 14 RFSSFY-VSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNM 72
+F S + + SK +LG++G+ V S + + +G + + + + FL+L + + N
Sbjct: 124 QFCSLHRLGSKYVLGIAGLFTVFSSFIFTTAIIKFLGSDISEL-KDALFFLLLVIDLSNS 182
Query: 73 CILVNAVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFA 132
L + + I+ L +GP+I+L ++ E L VG+ + V MFA
Sbjct: 183 GRLAQLALSGSNQAEVTQNIARGLELLGPAISLDTIVEVLLVGVGTLSGVQRLEVLCMFA 242
Query: 133 ALAVLLDFFLQVTAFVALIEVHAPILGLWGVKMVVV 168
L+VL+++ + +T + A + + L GV M VV
Sbjct: 243 VLSVLVNYVVFMTFYPACLSLIFD-LSRSGVDMSVV 277
>sp|Q96F81|DISP1_HUMAN Protein dispatched homolog 1 OS=Homo sapiens GN=DISP1 PE=2 SV=3
Length = 1524
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 61/114 (53%), Gaps = 1/114 (0%)
Query: 439 LINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIM 498
LI + +++ F V LL T ++ S ++ + + +G + +LG +LN + V + +
Sbjct: 985 LIAMGLSVAVAFSVMLLTTWNIIISLYAIISIAGTIFVTVGSLVLLGWELNVLESVTISV 1044
Query: 499 SIGIAVEFCVHIVHAF-LVSHGNRNQRSQKALSTMGASVFSGITLTKLVGVIVL 551
++G++V+F VH A+ L +R + +LS +G+++ T + G +++
Sbjct: 1045 AVGLSVDFAVHYGVAYRLAPDPDREGKVIFSLSRVGSAMAMAALTTFVAGAMMM 1098
>sp|A7Z064|HMDH_BOVIN 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Bos taurus
GN=HMGCR PE=2 SV=2
Length = 888
Score = 38.5 bits (88), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 11/137 (8%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGV----KSTLIIMEVIPFLVLAVGVDNMCIL 75
+ SK +LG++G+ + S + FS + + K + E +PF +L V + L
Sbjct: 86 LGSKYILGIAGLFTIFSSFV-----FSTVVIHFLDKELTGLNEALPFFLLLVDLSRASAL 140
Query: 76 VN-AVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAAL 134
A+ + V E I+ + +GP+ TL +L E L VG+ + + F +
Sbjct: 141 AKFALSSNSQDEVREN-IARGMAILGPTFTLDALVECLVIGVGTMSGVRQLEIMCCFGCM 199
Query: 135 AVLLDFFLQVTAFVALI 151
+VL ++F+ +T F A +
Sbjct: 200 SVLANYFVFMTFFPACV 216
>sp|P04035|HMDH_HUMAN 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Homo sapiens
GN=HMGCR PE=1 SV=1
Length = 888
Score = 38.5 bits (88), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 11/137 (8%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGV----KSTLIIMEVIPFLVLAVGVDNMCIL 75
+ SK +LG++G+ + S + FS + + K + E +PF +L + + L
Sbjct: 86 LGSKYILGIAGLFTIFSSFV-----FSTVVIHFLDKELTGLNEALPFFLLLIDLSRASTL 140
Query: 76 VN-AVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAAL 134
A+ + V E I+ + +GP+ TL +L E L VG+ + + F +
Sbjct: 141 AKFALSSNSQDEVREN-IARGMAILGPTFTLDALVECLVIGVGTMSGVRQLEIMCCFGCM 199
Query: 135 AVLLDFFLQVTAFVALI 151
+VL ++F+ +T F A +
Sbjct: 200 SVLANYFVFMTFFPACV 216
>sp|Q5R6N3|HMDH_PONAB 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Pongo abelii
GN=HMGCR PE=2 SV=1
Length = 888
Score = 38.1 bits (87), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 11/137 (8%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGV----KSTLIIMEVIPFLVLAVGVDNMCIL 75
+ SK +LG++G+ + S + FS + + K + E +PF +L + + L
Sbjct: 86 LGSKYILGIAGLFTIFSSFV-----FSTVVIHFLDKELTGLNEALPFFLLLIDLSRASTL 140
Query: 76 VN-AVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAAL 134
A+ + V E I+ + +GP+ TL +L E L VG+ + + F +
Sbjct: 141 AKFALSSNSQDEVREN-IARGMAILGPTFTLDALVECLVIGVGTMSGVRQLEIMCCFGCM 199
Query: 135 AVLLDFFLQVTAFVALI 151
+VL ++F+ +T F A +
Sbjct: 200 SVLANYFVFMTFFPACV 216
>sp|Q29512|HMDH_RABIT 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Oryctolagus
cuniculus GN=HMGCR PE=3 SV=1
Length = 888
Score = 38.1 bits (87), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 11/137 (8%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGV----KSTLIIMEVIPFLVLAVGVDNMCIL 75
+ SK +LG++G+ + S + FS + + K + E +PF +L + + L
Sbjct: 86 LGSKYILGIAGLFTIFSSFV-----FSTVVIHFLDKELTGLNEALPFFLLLIDLSRASAL 140
Query: 76 VN-AVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAAL 134
A+ + V E I+ + +GP+ TL +L E L VG+ + + F +
Sbjct: 141 AKFALSSNSQDEVREN-IARGMAILGPTFTLDALVECLVIGVGTMSGVRQLEIMCCFGCM 199
Query: 135 AVLLDFFLQVTAFVALI 151
+VL ++F+ +T F A +
Sbjct: 200 SVLANYFVFMTFFPACV 216
>sp|P09610|HMDH_MESAU 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Mesocricetus
auratus GN=HMGCR PE=1 SV=1
Length = 887
Score = 38.1 bits (87), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 11/137 (8%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGV----KSTLIIMEVIPFLVLAVGVDNMCIL 75
+ SK +LG++G+ + S + FS + + K + E +PF +L + + L
Sbjct: 86 LGSKYILGIAGLFTIFSSFV-----FSTVVIHFLDKELTGLNEALPFFLLLIDLSRASAL 140
Query: 76 VN-AVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAAL 134
A+ + V E I+ + +GP+ TL +L E L VG+ + + F +
Sbjct: 141 AKFALSSNSQDEVREN-IARGMAILGPTFTLDALVECLVIGVGTMSGVRQLEIMCCFGCM 199
Query: 135 AVLLDFFLQVTAFVALI 151
+VL ++F+ +T F A +
Sbjct: 200 SVLANYFVFMTFFPACV 216
>sp|Q01237|HMDH_MOUSE 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Mus musculus
GN=Hmgcr PE=2 SV=3
Length = 887
Score = 37.7 bits (86), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 11/137 (8%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGV----KSTLIIMEVIPFLVLAVGVDNMCIL 75
+ SK +LG++G+ + S + FS + + K + E +PF +L + + L
Sbjct: 86 LGSKYILGIAGLFTIFSSFV-----FSTVVIHFLDKELTGLNEALPFFLLLIDLSRASAL 140
Query: 76 VN-AVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAAL 134
A+ + V E I+ + +GP+ TL +L E L VG+ + + F +
Sbjct: 141 AKFALSSNSQDEVREN-IARGMAILGPTFTLDALVECLVIGVGTMSGVRQLEIMCCFGCM 199
Query: 135 AVLLDFFLQVTAFVALI 151
+VL ++F+ +T F A +
Sbjct: 200 SVLANYFVFMTFFPACV 216
>sp|P00347|HMDH_CRIGR 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Cricetulus
griseus GN=HMGCR PE=1 SV=1
Length = 887
Score = 37.7 bits (86), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 11/137 (8%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGV----KSTLIIMEVIPFLVLAVGVDNMCIL 75
+ SK +LG++G+ + S + FS + + K + E +PF +L + + L
Sbjct: 86 LGSKYILGIAGLFTIFSSFV-----FSTVVIHFLDKELTGLNEALPFFLLLIDLSRASAL 140
Query: 76 VN-AVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAAL 134
A+ + V E I+ + +GP+ TL +L E L VG+ + + F +
Sbjct: 141 AKFALSSNSQDEVREN-IARGMAILGPTFTLDALVECLVIGVGTMSGVRQLEIMCCFGCM 199
Query: 135 AVLLDFFLQVTAFVALI 151
+VL ++F+ +T F A +
Sbjct: 200 SVLANYFVFMTFFPACV 216
>sp|P51639|HMDH_RAT 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Rattus
norvegicus GN=Hmgcr PE=1 SV=2
Length = 887
Score = 37.4 bits (85), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 11/137 (8%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGV----KSTLIIMEVIPFLVLAVGVDNMCIL 75
+ SK +LG++G+ + S + FS + + K + E +PF +L + + L
Sbjct: 86 LGSKYILGIAGLFTIFSSFV-----FSTVVIHFLDKELTGLNEALPFFLLLIDLSRASAL 140
Query: 76 VN-AVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAAL 134
A+ + V E I+ + +GP+ TL +L E L VG+ + + F +
Sbjct: 141 AKFALSSNSQDEVREN-IARGMAILGPTFTLDALVECLVIGVGTMSGVRQLEIMCCFGCM 199
Query: 135 AVLLDFFLQVTAFVALI 151
+VL ++F+ +T F A +
Sbjct: 200 SVLANYFVFMTFFPACV 216
>sp|Q61982|NOTC3_MOUSE Neurogenic locus notch homolog protein 3 OS=Mus musculus GN=Notch3
PE=1 SV=1
Length = 2318
Score = 37.4 bits (85), Expect = 0.34, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 285 GCCRKFVNGTYC--PPDDQPPCCSPDEEPCG----VNGVCKDCTTCFR 326
G C NG +C PP PP C P PC +GVC D FR
Sbjct: 671 GSCVDGENGFHCLCPPGSLPPLCLPANHPCAHKPCSHGVCHDAPGGFR 718
>sp|P20715|HMDH_XENLA 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Xenopus laevis
GN=hmgcr PE=2 SV=1
Length = 883
Score = 37.4 bits (85), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 9/136 (6%)
Query: 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGV----KSTLIIMEVIPFLVLAVGVDNMCIL 75
+ SK +LG++G+ + S + FS + + K + E +PF +L + + L
Sbjct: 86 LGSKYILGIAGLFTIFSSFV-----FSTVVIHFLDKELTGLNEALPFFLLLIDLSKASAL 140
Query: 76 VNAVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALA 135
+ + I+ + +GP+ TL +L E L VG+ + + F ++
Sbjct: 141 AKFALSSNSQDEVRDNIARGMAILGPTFTLEALVECLVIGVGTMSGVRQLEIMCCFGCMS 200
Query: 136 VLLDFFLQVTAFVALI 151
VL ++F +T F A +
Sbjct: 201 VLANYFAFMTFFPACV 216
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.139 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 208,918,416
Number of Sequences: 539616
Number of extensions: 8451303
Number of successful extensions: 28024
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 86
Number of HSP's that attempted gapping in prelim test: 27753
Number of HSP's gapped (non-prelim): 264
length of query: 613
length of database: 191,569,459
effective HSP length: 123
effective length of query: 490
effective length of database: 125,196,691
effective search space: 61346378590
effective search space used: 61346378590
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 64 (29.3 bits)