Query 007203
Match_columns 613
No_of_seqs 249 out of 2529
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 20:21:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007203.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007203hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00917 2A060601 Niemann-Pic 100.0 5.1E-82 1.1E-86 748.0 52.5 564 1-590 582-1204(1204)
2 TIGR00918 2A060602 The Eukaryo 100.0 3.5E-76 7.5E-81 684.3 50.0 572 1-599 409-1127(1145)
3 KOG1934 Predicted membrane pro 100.0 1.7E-74 3.7E-79 654.1 43.4 523 15-611 274-852 (868)
4 PF02460 Patched: Patched fami 100.0 5.8E-73 1.3E-77 659.5 43.8 517 1-589 226-797 (798)
5 KOG1935 Membrane protein Patch 100.0 3E-59 6.4E-64 501.0 32.7 565 1-600 422-1081(1143)
6 KOG1933 Cholesterol transport 100.0 2.1E-62 4.6E-67 559.0 7.0 581 1-599 559-1184(1201)
7 COG1033 Predicted exporters of 100.0 1.9E-57 4.1E-62 505.2 44.9 481 22-594 218-726 (727)
8 TIGR00921 2A067 The (Largely A 100.0 5.8E-48 1.2E-52 447.1 48.2 472 23-588 216-719 (719)
9 TIGR00833 actII Transport prot 100.0 4.8E-41 1E-45 394.7 47.6 535 24-592 197-906 (910)
10 TIGR03480 HpnN hopanoid biosyn 100.0 1.5E-38 3.3E-43 373.3 42.3 501 25-586 294-856 (862)
11 TIGR00921 2A067 The (Largely A 100.0 1.8E-30 3.9E-35 301.1 34.8 345 164-595 4-353 (719)
12 COG1033 Predicted exporters of 100.0 1.5E-30 3.2E-35 290.4 31.4 344 164-600 13-361 (727)
13 TIGR00915 2A0602 The (Largely 100.0 3.8E-26 8.2E-31 272.1 41.2 544 27-607 365-1041(1044)
14 PRK10614 multidrug efflux syst 100.0 7E-26 1.5E-30 269.6 39.0 533 26-591 358-1010(1025)
15 TIGR00914 2A0601 heavy metal e 100.0 1.5E-25 3.3E-30 267.8 37.4 540 27-606 368-1048(1051)
16 PRK09579 multidrug efflux prot 99.9 1.1E-24 2.4E-29 258.6 41.2 528 27-594 358-1007(1017)
17 PRK10503 multidrug efflux syst 99.9 7.1E-25 1.5E-29 260.8 39.4 535 26-591 367-1024(1040)
18 PRK10555 aminoglycoside/multid 99.9 4.2E-24 9.1E-29 254.5 39.7 530 27-592 365-1029(1037)
19 PRK09577 multidrug efflux prot 99.9 2.7E-24 5.9E-29 255.9 38.0 536 27-595 364-1028(1032)
20 PRK15127 multidrug efflux syst 99.9 4.9E-24 1.1E-28 253.9 38.0 531 27-593 365-1033(1049)
21 PF03176 MMPL: MMPL family; I 99.9 2E-24 4.2E-29 228.0 27.7 200 392-593 99-306 (333)
22 PRK13024 bifunctional preprote 99.9 2.1E-23 4.4E-28 238.7 37.8 414 26-595 290-738 (755)
23 PF00873 ACR_tran: AcrB/AcrD/A 99.9 5E-23 1.1E-27 246.7 33.0 533 27-589 358-1020(1021)
24 TIGR03480 HpnN hopanoid biosyn 99.9 1E-22 2.2E-27 239.8 34.4 195 396-592 227-426 (862)
25 PF12349 Sterol-sensing: Stero 99.9 2.1E-24 4.6E-29 200.8 13.3 134 19-152 1-134 (153)
26 PRK14726 bifunctional preprote 99.9 4.3E-20 9.2E-25 210.8 41.5 409 26-592 396-830 (855)
27 COG0841 AcrB Cation/multidrug 99.9 1.5E-21 3.3E-26 228.1 29.0 524 27-590 356-1007(1009)
28 TIGR00833 actII Transport prot 99.9 5.8E-21 1.2E-25 225.2 33.3 199 393-593 130-336 (910)
29 PRK13023 bifunctional preprote 99.9 1.7E-19 3.7E-24 203.6 37.4 426 26-612 302-756 (758)
30 TIGR00920 2A060605 3-hydroxy-3 99.9 1.2E-22 2.7E-27 225.5 11.6 144 1-151 72-216 (886)
31 COG2409 Predicted drug exporte 99.8 1.4E-16 3.1E-21 187.6 34.6 557 19-593 203-920 (937)
32 COG4258 Predicted exporter [Ge 99.8 1.9E-16 4.1E-21 167.5 29.1 191 28-224 284-490 (788)
33 PRK12911 bifunctional preprote 99.8 3.3E-15 7.1E-20 172.0 37.8 434 27-595 934-1400(1403)
34 PRK09579 multidrug efflux prot 99.8 4.9E-17 1.1E-21 193.6 23.0 191 394-592 290-491 (1017)
35 COG0841 AcrB Cation/multidrug 99.7 1.8E-17 3.9E-22 194.2 18.0 217 362-595 264-491 (1009)
36 TIGR00917 2A060601 Niemann-Pic 99.7 7.6E-16 1.7E-20 184.4 32.2 156 440-597 573-754 (1204)
37 PRK10614 multidrug efflux syst 99.7 8.3E-17 1.8E-21 192.2 22.9 191 394-592 291-492 (1025)
38 PRK10555 aminoglycoside/multid 99.7 9.7E-17 2.1E-21 191.7 23.1 193 395-592 298-499 (1037)
39 PRK09577 multidrug efflux prot 99.7 1.1E-16 2.4E-21 191.2 22.0 193 395-592 297-498 (1032)
40 TIGR00916 2A0604s01 protein-ex 99.7 9.8E-17 2.1E-21 155.1 17.3 142 433-577 44-190 (192)
41 PRK15127 multidrug efflux syst 99.7 1.7E-16 3.6E-21 189.6 22.9 191 394-592 297-499 (1049)
42 TIGR00915 2A0602 The (Largely 99.7 1.8E-16 3.8E-21 189.6 22.5 191 394-592 297-499 (1044)
43 PF00873 ACR_tran: AcrB/AcrD/A 99.7 1.5E-16 3.3E-21 190.9 22.0 198 393-597 289-497 (1021)
44 PRK13022 secF preprotein trans 99.7 4.1E-16 8.8E-21 160.0 21.9 160 432-594 123-287 (289)
45 PRK10503 multidrug efflux syst 99.7 2.6E-16 5.7E-21 187.8 21.7 190 395-592 301-501 (1040)
46 PF03176 MMPL: MMPL family; I 99.7 1.4E-16 3.1E-21 168.1 12.0 134 23-156 166-304 (333)
47 TIGR00966 3a0501s07 protein-ex 99.7 5.2E-15 1.1E-19 148.9 20.0 147 432-581 94-245 (246)
48 TIGR00914 2A0601 heavy metal e 99.7 6E-15 1.3E-19 177.1 22.8 190 394-592 300-509 (1051)
49 PRK13024 bifunctional preprote 99.6 1.5E-14 3.2E-19 166.2 22.7 161 429-593 259-422 (755)
50 COG3696 Putative silver efflux 99.6 2.1E-13 4.5E-18 151.9 29.6 549 27-593 361-1022(1027)
51 PRK08578 preprotein translocas 99.6 4.4E-14 9.6E-19 145.1 20.8 158 432-595 130-291 (292)
52 PRK05812 secD preprotein trans 99.6 4.1E-14 8.8E-19 154.4 20.4 155 433-591 330-487 (498)
53 TIGR01129 secD protein-export 99.6 5.3E-14 1.2E-18 150.2 20.1 151 432-586 244-397 (397)
54 PRK14726 bifunctional preprote 99.6 1.6E-13 3.4E-18 157.3 22.6 161 430-594 366-529 (855)
55 PRK13023 bifunctional preprote 99.6 1.4E-13 2.9E-18 156.1 21.6 157 433-593 275-434 (758)
56 TIGR00918 2A060602 The Eukaryo 99.6 3E-12 6.4E-17 151.1 31.8 156 439-596 399-564 (1145)
57 PRK13021 secF preprotein trans 99.5 1.7E-12 3.8E-17 132.7 19.2 171 432-606 122-297 (297)
58 PF02355 SecD_SecF: Protein ex 99.5 4E-12 8.8E-17 122.2 20.5 160 429-591 24-188 (189)
59 PRK12933 secD preprotein trans 99.5 1.9E-12 4E-17 142.2 18.3 157 436-594 436-598 (604)
60 PRK12911 bifunctional preprote 99.4 9.1E-12 2E-16 144.1 20.9 153 438-594 911-1066(1403)
61 TIGR00916 2A0604s01 protein-ex 99.4 7E-13 1.5E-17 128.3 8.8 118 25-143 71-191 (192)
62 COG2409 Predicted drug exporte 99.4 3.8E-11 8.2E-16 142.0 24.6 194 398-593 146-347 (937)
63 PRK13022 secF preprotein trans 99.3 1.4E-11 3E-16 126.6 9.7 128 24-152 150-280 (289)
64 PF02460 Patched: Patched fami 99.3 2E-10 4.3E-15 134.9 20.6 136 460-597 249-386 (798)
65 PRK08343 secD preprotein trans 99.3 2.1E-10 4.5E-15 123.0 18.8 126 436-562 261-387 (417)
66 COG3696 Putative silver efflux 99.2 3.7E-10 8.1E-15 126.3 15.5 163 428-592 323-498 (1027)
67 PF12349 Sterol-sensing: Stero 99.1 1.2E-09 2.5E-14 101.9 15.0 132 460-593 6-140 (153)
68 COG0341 SecF Preprotein transl 99.1 1E-08 2.2E-13 104.9 19.0 164 432-598 130-298 (305)
69 KOG1934 Predicted membrane pro 99.1 3.4E-09 7.3E-14 122.3 17.0 138 459-598 282-421 (868)
70 TIGR00966 3a0501s07 protein-ex 99.1 5.1E-10 1.1E-14 112.7 9.1 121 24-145 121-244 (246)
71 PRK05812 secD preprotein trans 99.0 5.3E-10 1.2E-14 122.4 9.7 127 26-153 357-484 (498)
72 COG0342 SecD Preprotein transl 99.0 1.5E-08 3.4E-13 110.9 19.2 156 435-594 342-500 (506)
73 TIGR01129 secD protein-export 99.0 1.1E-09 2.3E-14 117.3 9.9 124 26-150 272-396 (397)
74 PRK08578 preprotein translocas 98.9 1.1E-08 2.3E-13 105.4 11.2 123 24-153 158-284 (292)
75 PF02355 SecD_SecF: Protein ex 98.9 3.5E-08 7.6E-13 95.0 13.1 131 21-152 51-184 (189)
76 COG4258 Predicted exporter [Ge 98.8 2.7E-07 5.8E-12 99.1 17.7 166 416-588 236-404 (788)
77 PRK12933 secD preprotein trans 98.7 3.4E-08 7.4E-13 109.0 10.3 127 26-153 464-592 (604)
78 KOG1935 Membrane protein Patch 98.7 5.1E-07 1.1E-11 100.0 16.8 132 461-595 442-574 (1143)
79 PRK13021 secF preprotein trans 98.7 8.9E-08 1.9E-12 98.3 9.8 127 24-151 149-278 (297)
80 PRK08343 secD preprotein trans 98.3 2.6E-06 5.6E-11 91.7 10.7 116 34-151 295-410 (417)
81 KOG3664 Predicted patched tran 98.2 5.8E-07 1.3E-11 102.5 3.1 133 19-151 343-496 (999)
82 COG0341 SecF Preprotein transl 98.2 1.5E-05 3.3E-10 81.8 11.6 134 20-154 153-289 (305)
83 COG0342 SecD Preprotein transl 98.1 1.3E-05 2.9E-10 88.1 9.6 127 25-152 366-493 (506)
84 TIGR00920 2A060605 3-hydroxy-3 98.0 9.6E-05 2.1E-09 84.2 14.1 131 459-592 89-222 (886)
85 KOG3664 Predicted patched tran 74.3 1 2.2E-05 52.8 0.1 133 454-589 343-499 (999)
86 PF08006 DUF1700: Protein of u 67.0 25 0.00053 33.5 7.8 18 337-354 3-20 (181)
87 COG4709 Predicted membrane pro 57.8 73 0.0016 30.5 8.8 17 337-353 3-19 (195)
88 KOG1933 Cholesterol transport 43.6 5.6 0.00012 48.3 -1.2 118 470-592 592-714 (1201)
89 PF09946 DUF2178: Predicted me 36.7 2.1E+02 0.0046 25.0 7.9 20 120-139 88-107 (111)
90 COG3301 NrfD Formate-dependent 24.8 2.4E+02 0.0052 29.0 6.9 98 27-129 136-237 (305)
91 TIGR02230 ATPase_gene1 F0F1-AT 23.1 76 0.0017 27.2 2.7 51 27-77 43-97 (100)
No 1
>TIGR00917 2A060601 Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
Probab=100.00 E-value=5.1e-82 Score=747.97 Aligned_cols=564 Identities=58% Similarity=0.986 Sum_probs=503.6
Q ss_pred CeeeehhhcCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhheeeeeccccHhHHHHHHH
Q 007203 1 MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVK 80 (613)
Q Consensus 1 ~~~y~~~~~~~~~~~~~~~v~s~~~l~~~~l~~~~~a~~~~~Gl~~~~g~~~~~~~~~~~p~l~l~igvd~~~~l~~~~~ 80 (613)
||+|+++.++++...+.+++|||+++++.|++++++|+++++|+++|+|++++++++.++|||++|||+||+|+++++|+
T Consensus 582 m~~y~~l~l~~~~~~~~~~v~Sk~~l~l~gv~~v~~sv~~s~Gl~~~~Gi~~t~i~~~v~PFLvL~IGVD~ifilv~~~~ 661 (1204)
T TIGR00917 582 MFAYISLSLGHSKRFKSLFIDSKVLLGISGVLIVLASVVGSVGVFSYIGLKATLIIMEVIPFLVLAVGVDNIFILVQTYQ 661 (1204)
T ss_pred HHHHHHHHHccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 68899999999876666899999999999999999999999999999999999867899999999999999999999997
Q ss_pred hcCC--CC---------CHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007203 81 RQPM--EL---------VLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVA 149 (613)
Q Consensus 81 ~~~~--~~---------~~~~~i~~~l~~~g~~i~~tslTt~~~F~~~~~s~ip~ir~Fgi~~aigv~~~~v~~lt~~pa 149 (613)
+..+ +. +.++|++++++++|+||++|++|+++||+++.++++|++|.||+++++|++++|++++|+|||
T Consensus 662 r~~~~~~~~~~~~~~~~~~~~ri~~~l~~~G~sI~ltslt~~~aF~~g~~s~~Pavr~F~~~aa~av~~~fll~it~f~a 741 (1204)
T TIGR00917 662 RLERFYREVGVDNEQELTLEQQLGRALGEVGPSITLASLSESLAFFLGALSKMPAVRAFSLFAGLAVFIDFLLQITAFVA 741 (1204)
T ss_pred HhhhccccccccccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6432 12 789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH--------------------------------------------hcccccCCccchhhHHHHHHHHHHHHHHhhhcc
Q 007203 150 LIE--------------------------------------------VHAPILGLWGVKMVVVSVFLAFTVASIALSTRI 185 (613)
Q Consensus 150 ll~--------------------------------------------~~~~~l~~~~~k~~vl~~~~~l~~~si~g~~~l 185 (613)
++. .|+|++.+++.|.++++++++++++|+||+.++
T Consensus 742 lL~ld~rR~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~ff~~~yap~L~~~~vki~Vl~~f~~~~~~si~g~~~i 821 (1204)
T TIGR00917 742 LLVLDFKRTEDNRVDCFPCIKGSKSSISAEKGSGQRKEGLLTRFFKEVYAPFLLHWIVKIVVIAFFFGLLMFGIALATRI 821 (1204)
T ss_pred HHHHHHHHHHcCCccEEEeecccccccccccCcCcccccHHHHHHHHhcchhhcCCCcceEEEehHHHHHHHHHHHHhhc
Confidence 991 256788888899999999999999999999999
Q ss_pred cccccccccCCCCchhhhHHHHHHHhhccCCCEEEEEe-cCCCCchhhhhhhhhcccccCchhhHHHHHHhccCCCCccc
Q 007203 186 EAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVK-DYNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPELSYI 264 (613)
Q Consensus 186 ~~~~~~~~~~p~ds~~~~~~~~~~~~f~~~~~~~iv~~-~~d~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~ 264 (613)
+.|+|+++++|+||++.++++.++++|+.++|+++|++ +.||+++ ++|+++|...+|+++++.++.++ .+++
T Consensus 822 ~~gLd~~~~~p~dSyl~~yf~~~~~~~~~gppvy~Vv~~~~dy~~~-~~q~~lc~~~~c~~~sl~~~~~~------~~~i 894 (1204)
T TIGR00917 822 DIGLDQQLALPQDSYLQIYFASLTPLLEVGPPVYFVLKGDYNYTDS-ESQNKVCTGGGCNKDSIVNVFNN------LTYI 894 (1204)
T ss_pred CCCcCHhhhCCCCCcHHHHHHHHHHhhccCCcEEEEEcCCCCCCCH-HHHHHHhcccCCcHHHHHHhhcc------cchh
Confidence 99999999999999999999999999998999999998 5899886 46788987789999988876543 3455
Q ss_pred cCCCCchHHHHHhhcCCCccccccc-ccCCccCCCCCCCCCCCCCCCCCCCCCcccCCCcccccCCCCCCCCChhHHHhh
Q 007203 265 AKPAASWLDDFLVWTSPEAFGCCRK-FVNGTYCPPDDQPPCCSPDEEPCGVNGVCKDCTTCFRHSDLVNNRPSTEQFREK 343 (613)
Q Consensus 265 ~~~~~~wl~~f~~~~~~~~~~~~~~-~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~~~ 343 (613)
.+++.+|++||.+|+++.. +||+. ..++.++++. .++|..|.+...-..+.|+.++|+++
T Consensus 895 ~~~~~sWlddf~~wl~~~~-~cc~~~~~~~~~c~~~------------------~~~~~~c~~~~~~~~~~p~~~~F~~~ 955 (1204)
T TIGR00917 895 AKPASSWLDDYFDWASPQS-SCCCRKFTNGTFCNGP------------------DPSCFRCADLSSNAQGRPSTTQFKEY 955 (1204)
T ss_pred cCCchHHHHHHHHHhCccc-cceeecCCCCCcCCCc------------------cccccccccccccccCCCCHHHHHHH
Confidence 6778899999999998753 46653 2344444311 13344444321222457888999999
Q ss_pred hHHHHhhCCCccccCCCCCcccccccccCCCCCeEEeeEEEEecccCCChhHHHHHHHHHHHHHHHhhhccCcccccccc
Q 007203 344 LPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSV 423 (613)
Q Consensus 344 l~~~l~~~p~~~~~~~~~~~y~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~ 423 (613)
+++|++..|+.+|.+||+..|.+++++++++...|+++||+.+|+++++++|++++++++|+++++++++.++++++++.
T Consensus 956 l~~fl~~~~~~~c~~gg~~~y~~~v~~~~~~~~~I~aS~f~~~h~~l~~~~d~i~a~~~~R~ia~~i~~~~~~~vfpys~ 1035 (1204)
T TIGR00917 956 LPFFLNDNPSADCAKGGHAAYSSAVDLQGHANTIIQASYFMTYHTPLNTQADFINALRAAREISANVTRSLKMEVFPYSV 1035 (1204)
T ss_pred HHHHhcCCCccccccccccccccceEeecCCCceEEEEEEEEeccCCCCHHHHHHHHHHHHHHHHHhhhccCCccccCcC
Confidence 99999998989999999999998888876545569999999999999999999999999999999987656899999999
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCchhHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhHh
Q 007203 424 FYIFFEQYLDIWRVALINIAVALGAIFIVCLLMT-SSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGI 502 (613)
Q Consensus 424 ~~~~~~~~~~i~~~~~~~~~~~~~~v~vv~~l~~-~s~~~~~~~~l~i~~~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl 502 (613)
.++|+|||..++++.+++++++++++++++++++ .+++.++++.++++++++.++|+|++||++||++|++.++|++|+
T Consensus 1036 ~~vf~eQY~~i~~~~~~~l~~a~~~v~~V~~l~l~l~~~~aliv~l~I~~i~~~~~g~M~~~gisLN~vSlv~Li~avGi 1115 (1204)
T TIGR00917 1036 FYVFFEQYLTIWSDALINLGISLGAIFIVTLVLLGLNALSAVNVVISVGMIVVNLVGIMHLWNISLNAVSVVNLVMAKGI 1115 (1204)
T ss_pred ceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999998 489999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 007203 503 AVEFCVHIVHAFLVS-HGNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVF 581 (613)
Q Consensus 503 ~VD~sih~~~~~~~~-~~~~~~a~~~al~~~g~~v~~~~~ltt~~gf~~L~fs~~~~~~~f~~~~~~~~~~~~l~~~l~~ 581 (613)
+||++.|+.++|.+. .+++++|+++|++++|+|++.|+++|+++|++||+|+++++++.||++|++.++++|++|+|++
T Consensus 1116 sV~f~~hI~~~f~~~~~~~~~~ra~~al~~vg~~v~~g~tlT~~~g~~~L~f~~s~if~vfff~m~l~iv~~g~~HGLvf 1195 (1204)
T TIGR00917 1116 SIEFCSHINAQFSTSKHFSRNHRAKEALGGMGSSVFSGITLTKLVGVVVLGFSKSEIFQVYYFRMYLAIVLLGALHGLVF 1195 (1204)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999876 4689999999999999999999557899999999999999999999999988889999999999
Q ss_pred HHHHHHhhC
Q 007203 582 LPVILSLFG 590 (613)
Q Consensus 582 lP~ll~~~~ 590 (613)
||++|+++|
T Consensus 1196 LPVlLS~~G 1204 (1204)
T TIGR00917 1196 LPVLLSYIG 1204 (1204)
T ss_pred HHHHHHhcC
Confidence 999999986
No 2
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family.
Probab=100.00 E-value=3.5e-76 Score=684.31 Aligned_cols=572 Identities=30% Similarity=0.509 Sum_probs=461.8
Q ss_pred CeeeehhhcCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhheeeeeccccHhHHHHHHH
Q 007203 1 MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVK 80 (613)
Q Consensus 1 ~~~y~~~~~~~~~~~~~~~v~s~~~l~~~~l~~~~~a~~~~~Gl~~~~g~~~~~~~~~~~p~l~l~igvd~~~~l~~~~~ 80 (613)
||+|++++++++ ++++||++|++.|++++++|+++++|++.++|+++|.+...++|||++|||+||+|+++++|+
T Consensus 409 m~~Ya~~~l~~~-----d~v~sk~~Lgl~GVliv~lSv~~s~Gl~~~~Gi~fn~i~~~ViPFLvLgIGVDn~Fllv~~~~ 483 (1145)
T TIGR00918 409 MLAYACLTMLRW-----DCAKSQGSVGLAGVLLVALSVAAGLGLCALLGISFNAATTQVLPFLALGVGVDDVFLLAHAFS 483 (1145)
T ss_pred HHHHHHHHhccc-----hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHhhhhHHHhhhhhcchhHHHHHHh
Confidence 688999999986 599999999999999999999999999999999999966799999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q 007203 81 RQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIE-------- 152 (613)
Q Consensus 81 ~~~~~~~~~~~i~~~l~~~g~~i~~tslTt~~~F~~~~~s~ip~ir~Fgi~~aigv~~~~v~~lt~~pall~-------- 152 (613)
+..++.+.++|+.++++++|++|++|++|++++|++++++++|++|.||++++++++++|++++|+|||++.
T Consensus 484 ~t~~~~~v~~r~~~~l~~~g~SI~~tslt~~~aF~~ga~t~~Pavr~F~~~~a~av~~~~l~qit~F~AlLaLD~rR~~~ 563 (1145)
T TIGR00918 484 ETGQNIPFEERTGECLKRTGASVVLTSISNVTAFFMAALIPIPALRAFSLQAAIVVVFNFAAVLLVFPAILSLDLRRRED 563 (1145)
T ss_pred hcCccCCHHHHHHHHHHHhcceeeHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 988888999999999999999999999999999999999999999999999999999999999999999991
Q ss_pred -h------------------------------------------------------------------------------
Q 007203 153 -V------------------------------------------------------------------------------ 153 (613)
Q Consensus 153 -~------------------------------------------------------------------------------ 153 (613)
+
T Consensus 564 ~R~D~~cC~~~p~~~~~~~~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (1145)
T TIGR00918 564 RRLDIFCCFFSPCSARVIQIEPQAYADGSAPPVYSSHMQSTVQLRTEYDPGTQHYYTTNEPRSHLSVQPSDPLSCQSPDI 643 (1145)
T ss_pred CCcceeeeecccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0
Q ss_pred -----------------------------------cccccCCccchhhHHHHHHHHHHHHHHhhhcccccccccccCCCC
Q 007203 154 -----------------------------------HAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRD 198 (613)
Q Consensus 154 -----------------------------------~~~~l~~~~~k~~vl~~~~~l~~~si~g~~~l~~~~~~~~~~p~d 198 (613)
|+|++.+++.|.+++++|++++++|+||+.+++.|+|+++.+|+|
T Consensus 644 ~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~~YaPfLl~~~vKv~VlliF~~~l~~si~g~~~i~~GLd~~~lvP~D 723 (1145)
T TIGR00918 644 AGSTRDLLSQFEDSKAACLSLPCARWTLATFAEKHYAPFLLQSWAKVVVIFLFLALLGLSLYGTTRVQDGLDLTDIVPRD 723 (1145)
T ss_pred ccccccccccccccccccccccccchHHHHHHHHHhhHHHcCCCeeeEeehHHHHHHHHHHHhhhhhccCCCHHHhccCC
Confidence 112344555678889999999999999999999999999999999
Q ss_pred chhhhHHHHHHHhhccCCCEEEEEec-CCCCchhhhhhhhhcccccCchhhHHHHHHhccCCCCccccCC-----CCchH
Q 007203 199 SYLQGYFDNTTEYLRVGPPLYFVVKD-YNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPELSYIAKP-----AASWL 272 (613)
Q Consensus 199 s~~~~~~~~~~~~f~~~~~~~iv~~~-~d~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~-----~~~wl 272 (613)
|++.++++..+++|+. .|+++|+++ .||.+. |++ +.+ ++ +++++.+++.++ +.+|+
T Consensus 724 Syl~~yf~~~~~yF~~-~~vy~V~~~~~dy~~~---q~~-----------l~~-l~--~~f~~~~~i~~~~~~~~~~~WL 785 (1145)
T TIGR00918 724 TNEHDFLDAQFRYFSF-YNMYAVTQGNFDYPTQ---QQL-----------LYD-LH--QSFSSVKYVLKEDNGQLPRMWL 785 (1145)
T ss_pred CcHHHHHHHHHHhcCc-CceEEEeCCCCCchHH---HHH-----------HHH-HH--HHhccCceeecCCCCCccchHH
Confidence 9999999999999987 589999885 777543 222 211 11 223344454433 46999
Q ss_pred HHHHhhcCCC--cc-ccccc--ccCCccCCCCCCCCCCCCC---CCCCCCCCcccCCCcccccCCCCCCCCChhHHHhhh
Q 007203 273 DDFLVWTSPE--AF-GCCRK--FVNGTYCPPDDQPPCCSPD---EEPCGVNGVCKDCTTCFRHSDLVNNRPSTEQFREKL 344 (613)
Q Consensus 273 ~~f~~~~~~~--~~-~~~~~--~~n~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~~~l 344 (613)
+||.+|+++. .+ +||+. ...+.+++..++..+++.- .+. ...+++.++....|.. -.+++|+.++|++++
T Consensus 786 ddf~~wL~~lq~~~d~~~~~g~~~~~~~~n~s~~~~~~~~l~~qtg~-~~~p~~~~~~~~~r~v-~~~g~~~~~~F~~yL 863 (1145)
T TIGR00918 786 HYFRDWLQGLQKAFDEDWRDGRITKENYRNGSDDAVLAYKLLVQTGH-RDKPVDKEQLTTQRLV-NADGIINPNAFYIYL 863 (1145)
T ss_pred HHHHHHHHHhhhhhhhhhhhcccccccccCCccccchhhhhcccccc-cCCccccccccccccc-cccCCCCHHHHHHHH
Confidence 9999999862 22 24432 1223344333222111110 000 0001111111110111 135688999999999
Q ss_pred HHHHhhCCCccccC-C---C-CCccccc-ccccCC-----CCCeEEeeEEEEecccCCChhHHHHHHHHHHHHHHHhhhc
Q 007203 345 PWFLNALPSADCAK-G---G-HGAYSTS-VDLNGY-----ESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDT 413 (613)
Q Consensus 345 ~~~l~~~p~~~~~~-~---~-~~~y~~~-~~~~~~-----~~~~i~~s~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 413 (613)
+.|++..|+..... + + ...|..+ .++++. .+.++..++|+++++++++++|+.++++++|+++++++.
T Consensus 864 ~~wl~~~~~~y~~sq~~~~p~~~~~~~~~~~~~~~~~~I~as~~i~~~~F~fy~~~L~~~~d~i~al~~~R~Ia~~~~~- 942 (1145)
T TIGR00918 864 SAWVSNDPVAYAASQANIYPHPPEWLHDKNDYDPENLRIPAAEPLEYAQFPFYLNGLRETSQFVEAIEHVRAICNNYEG- 942 (1145)
T ss_pred HHHHcCCcchhhcccccccCCcchhcccccccccccccccccccchhheeeEEEcCCCCHHHHHHHHHHHHHHHHhhhh-
Confidence 99987533310000 0 0 0111110 111111 122344458999999999999999999999999999863
Q ss_pred cCcccccccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccchhHHH
Q 007203 414 LKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSV 493 (613)
Q Consensus 414 ~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l~i~~~~~~~~G~m~~~gi~ln~~s~ 493 (613)
.++++|++|.+++|+||+..+.++.+.+++++++++++++++++++++.++++++++++++++++|+|++||++||++|+
T Consensus 943 ~~~~vf~~g~~fvf~eQy~~i~~~~~~~l~~al~~~fvV~~lll~~~~~a~iv~l~v~~i~v~v~G~M~lwgI~LnaVS~ 1022 (1145)
T TIGR00918 943 FGLPSYPSGYPFLFWEQYMGLRHWLLLSISVVLACTFLVCALLLLNPWTAGLIVLVLALMTVELFGMMGLLGIKLSAIPV 1022 (1145)
T ss_pred cCceeccCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhcccchhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHH
Q 007203 494 VNLIMSIGIAVEFCVHIVHAFLVSHGNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVII 573 (613)
Q Consensus 494 ~~~~i~iGl~VD~sih~~~~~~~~~~~~~~a~~~al~~~g~~v~~~~~ltt~~gf~~L~fs~~~~~~~f~~~~~~~~~~~ 573 (613)
+.++|++|++|||++|++++|....+++++|+++|+.++|.||+.|+ +||++|+++|+|+++.++..+||+++++++++
T Consensus 1023 vnLimsIGisVefsaHI~~~F~~~~~~r~eR~~~AL~~~G~pVl~g~-lTT~lGvlvLafs~s~~~~~~Ffk~~~l~V~~ 1101 (1145)
T TIGR00918 1023 VILIASVGIGVEFTVHIALGFLTAIGDRNRRAVLALEHMFAPVLDGA-LSTLLGVLMLAGSEFDFIVRYFFAVLAVLTCL 1101 (1145)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998778899999999999999999998 79999999999999876666667888888999
Q ss_pred HHHHHHHHHHHHHHhhCCCCcccccc
Q 007203 574 GFLHGLVFLPVILSLFGPPSRHIIIE 599 (613)
Q Consensus 574 ~l~~~l~~lP~ll~~~~~~~~~~~~~ 599 (613)
|++|+|++||++|+++||+.+.....
T Consensus 1102 g~lHgLv~LPVLLS~~Gp~~~~~p~~ 1127 (1145)
T TIGR00918 1102 GVLNGLVLLPVLLSMFGPEPEVSPAE 1127 (1145)
T ss_pred HHHHHHHHHHHHHHhcCCccccCCCC
Confidence 99999999999999999998887763
No 3
>KOG1934 consensus Predicted membrane protein (patched superfamily) [General function prediction only]
Probab=100.00 E-value=1.7e-74 Score=654.07 Aligned_cols=523 Identities=30% Similarity=0.524 Sum_probs=448.2
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhheeeeeccccHhHHHHHHHhcCCCCCHHHHHHH
Q 007203 15 FSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISN 94 (613)
Q Consensus 15 ~~~~~v~s~~~l~~~~l~~~~~a~~~~~Gl~~~~g~~~~~~~~~~~p~l~l~igvd~~~~l~~~~~~~~~~~~~~~~i~~ 94 (613)
...+|++||+||+++|++++++|.++++|++.|+|.+++. +..++|||++|||+||+|+++++|+++.++.+.+||+++
T Consensus 274 ~~~~~v~SKp~lai~g~l~p~mA~~ta~G~l~~~G~~f~s-I~~v~PFLvl~IGVDD~Flml~aW~rt~~~~~~~~Rm~~ 352 (868)
T KOG1934|consen 274 FMIDWVRSKPILAILGVLSPVMAIITAFGLLFWCGFPFNS-IVCVMPFLVLGIGVDDAFLMLAAWRRTSKKLSVEERMAE 352 (868)
T ss_pred cchhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcCCCCcc-eeeecchheeeecccHHHHHHHHHHhcCccCCHHHHHHH
Confidence 3557999999999999999999999999999999999998 789999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------
Q 007203 95 ALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI----------------------- 151 (613)
Q Consensus 95 ~l~~~g~~i~~tslTt~~~F~~~~~s~ip~ir~Fgi~~aigv~~~~v~~lt~~pall----------------------- 151 (613)
++.|+|++|++||+|++++|+.|.++|.|++|.||++++++++++|++++|||.|++
T Consensus 353 ~laeag~SItITSlTn~lsFgiG~~T~~p~v~~FC~~~a~Ai~f~fiYqlTFf~a~m~i~~~~E~~~~~~i~~~k~~~~~ 432 (868)
T KOG1934|consen 353 TLAEAGPSITITSLTNVLSFGIGAITPTPAVQIFCLYTAVAILFDFIYQLTFFAAVMVITGRREANGRHSIFCEKTIDLE 432 (868)
T ss_pred HHHHhcCeeeHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhcccCceeeeccCCcc
Confidence 999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------------HhcccccCCccchhhHHHHHHHHHHHHHHhhhcccccccccccCCCCchhhhHH
Q 007203 152 --------------------------EVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYF 205 (613)
Q Consensus 152 --------------------------~~~~~~l~~~~~k~~vl~~~~~l~~~si~g~~~l~~~~~~~~~~p~ds~~~~~~ 205 (613)
+.|++|+.+++.|..+++++++++.+++||+.+++.|+|+.+++|+|||+.+.+
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~fi~~~~vr~~vil~~~~Y~~~a~yG~~~i~~gl~~~kl~~~dS~l~~~~ 512 (868)
T KOG1934|consen 433 KTEEQKSSSSSSSSSLHNPILSRFFLDKYAPFILNPKVRLLVILLYLVYLAFAIYGCLNIKEGLDPSKLLPEDSPLVKSL 512 (868)
T ss_pred ccccccccCcccccccccchHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhheeccCCCCHHHcccccCcchHHH
Confidence 024678888899999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcc-CCCEEEEEec-CCCCchhhhhhhhhcccccCchhhHHHHHHhccCCCCccccCCCCchHHHHHhhcCCCc
Q 007203 206 DNTTEYLRV-GPPLYFVVKD-YNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPELSYIAKPAASWLDDFLVWTSPEA 283 (613)
Q Consensus 206 ~~~~~~f~~-~~~~~iv~~~-~d~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~wl~~f~~~~~~~~ 283 (613)
+..++++.+ +.++.+++.+ +|+++++++. ++.+.++++|+.++. ...+.+..|+++|.+|.+..
T Consensus 513 ~~~~~~~~~~~~~v~v~V~np~dl~~~~~~~------------~~~~~~~~fE~~~~~-~G~~sT~~wlr~y~~~~~~~- 578 (868)
T KOG1934|consen 513 RLQEKYFWEYGQQVAVFVNNPPDLSNPENRD------------NLNELVSEFESTPYS-MGRESTKFWLREYLNFLFEK- 578 (868)
T ss_pred HHHHHHhhccCceEEEEEcCCccCCCHHHHH------------HHHHHHHHHhcCCcc-cCcccchhHHHHHHHHHhhh-
Confidence 999999865 5678888874 8888875322 244444455555432 23345678999999974421
Q ss_pred ccccccccCCccCCCCCCCCCCCCCCCCCCCCCcccCCCcccccCCCCCCCCChhHHHhhhH-HHHhhCCCccccCCCCC
Q 007203 284 FGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVCKDCTTCFRHSDLVNNRPSTEQFREKLP-WFLNALPSADCAKGGHG 362 (613)
Q Consensus 284 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~~~l~-~~l~~~p~~~~~~~~~~ 362 (613)
|..+.. ++++|+..+. +++.. |+ ..
T Consensus 579 --------~~~~~~--------------------------------------~~~~~~~~~~~~fl~~-~~-------~~ 604 (868)
T KOG1934|consen 579 --------NAELED--------------------------------------NDDEFYDHLYESFLKS-PE-------FS 604 (868)
T ss_pred --------cccccC--------------------------------------CCcchhhhhHHHHhcc-cc-------cc
Confidence 111100 0122322222 23322 22 23
Q ss_pred cccccccccC--CCCCeEEeeEEEEecccCCChhHHHHHHHHHHHHHHHhhhccCcccccccceeeehhhHHHHHHHHHH
Q 007203 363 AYSTSVDLNG--YESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALI 440 (613)
Q Consensus 363 ~y~~~~~~~~--~~~~~i~~s~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~ 440 (613)
.|.+++.+++ ++...+.+.|+.+..++..+.+|..+.++++|++++++++ .++.++...+++.||+..+.++.++
T Consensus 605 ~~~~di~~~~~~~~~~~i~~f~f~~~~~~~~~~~~~~~~~~~~R~ia~~~~~---fnvtvf~~~~~f~Dq~~~v~~~ti~ 681 (868)
T KOG1934|consen 605 FWRNDIVFDNKSDEETIIFAFRFTIGLTNLTKWNERTRLLETWRKIADEYSD---FNVTVFDPSFVFLDQYLSVVPVTIQ 681 (868)
T ss_pred cCccceEeccCCCCCceEEEEEEEEEEeccCCHHHHHHHHHHHHHHHhhccC---CCeEEecCchHHHHHHHHhccHHHH
Confidence 4566666652 3445677888888889999999999999999999998853 4455567777899999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHHHHHHHhcC-
Q 007203 441 NIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVSHG- 519 (613)
Q Consensus 441 ~~~~~~~~v~vv~~l~~~s~~~~~~~~l~i~~~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~~~~~~~~~- 519 (613)
+++++++++++++++++.++...+++.++++++.++++|+|.+||++||++||+.++|+||++|||++|+++||..+++
T Consensus 682 ~~~~a~i~M~~v~~lfIp~~~~~~~it~si~SI~~GV~G~lslW~V~LDpISmi~iiMsIGFSVD~~AHi~yhy~~~~~~ 761 (868)
T KOG1934|consen 682 SIVIALICMFLVCFLFIPNPLCVFWITLSIVSINIGVFGFLSLWGVDLDPISMITIIMSIGFSVDFSAHVAYHYYQSRKS 761 (868)
T ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHHHhheeehHhhhhHHhcCCccHHHHHHHHHhCCceeeehhheeeeeEecCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCccccc
Q 007203 520 -NRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPSRHIII 598 (613)
Q Consensus 520 -~~~~a~~~al~~~g~~v~~~~~ltt~~gf~~L~fs~~~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~~~~~~~~~~ 598 (613)
++++|++.|++.+|+|+++++ ++|++|++||++.++++.+.|+ +++++++.+|++|+|++||++|+++.+.+.+++.
T Consensus 762 ~t~~~Rv~~aL~~vgwPv~Qa~-lSTiL~v~pL~~V~sYmv~vF~-KTv~LVv~~GllHGLv~LPviLs~f~~~~~~~~~ 839 (868)
T KOG1934|consen 762 STPRERLRSALSAVGWPVLQAG-LSTILGVLPLLFVPSYMVQVFF-KTVVLVVTLGLLHGLVFLPVILSLFPPIKKKCKR 839 (868)
T ss_pred CCHHHHHHHHHHhhhhHHHhhh-hHHHHHHHHHHhchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCcchhcccc
Confidence 899999999999999999999 6999999999999999999985 5666789999999999999999999998888888
Q ss_pred ccccccCCCCCCC
Q 007203 599 EKQQADEPSTSSN 611 (613)
Q Consensus 599 ~~~~~~~~~~~~~ 611 (613)
+++.+.+|+.++.
T Consensus 840 ~~~~~~~~~~~~~ 852 (868)
T KOG1934|consen 840 KKRAAASPRSSSE 852 (868)
T ss_pred ccccccccccccc
Confidence 8877777766553
No 4
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog. In Drosophila melanogaster, this protein associates with the smoothened protein to transduce hedgehog signals, leading to the activation of wingless, decapentaplegic and patched itself. It participates in cell interactions that establish pattern within the segment and imaginal disks during development. The mouse homologue may play a role in epidermal development. The human Niemann-Pick C1 protein, defects in which cause Niemann-Pick type II disease, is also a member of this family. This protein is involved in the intracellular trafficking of cholesterol, and may play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural functional integrity of nerve terminals.; GO: 0008158 hedgehog receptor activity, 0016020 membrane
Probab=100.00 E-value=5.8e-73 Score=659.54 Aligned_cols=517 Identities=40% Similarity=0.692 Sum_probs=442.3
Q ss_pred CeeeehhhcCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhheeeeeccccHhHHHHHHH
Q 007203 1 MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVK 80 (613)
Q Consensus 1 ~~~y~~~~~~~~~~~~~~~v~s~~~l~~~~l~~~~~a~~~~~Gl~~~~g~~~~~~~~~~~p~l~l~igvd~~~~l~~~~~ 80 (613)
|++|++++.++.+..+.+|+|||+|++++|++++++|+++++|++.++|+++++ +..++|||++|||+||+|+++++|+
T Consensus 226 ~~~f~~~~~~~~~~~~~~~~~sk~~l~~~gv~~~~la~~~~~Gl~~~~G~~~~~-i~~v~PFLvlgIGvDd~Fi~~~~~~ 304 (798)
T PF02460_consen 226 MFIFVVLSSSRFSSLSSDWVRSKPLLALAGVLSPLLAILASFGLLSLFGVPFNP-IVLVIPFLVLGIGVDDMFIMIHAWR 304 (798)
T ss_pred HHHHHHHHHhhcchhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHcCccchh-hHHHHHHHHHHHHHhceEEeHHHHh
Confidence 456778887777656678999999999999999999999999999999999998 6789999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q 007203 81 RQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIE-------- 152 (613)
Q Consensus 81 ~~~~~~~~~~~i~~~l~~~g~~i~~tslTt~~~F~~~~~s~ip~ir~Fgi~~aigv~~~~v~~lt~~pall~-------- 152 (613)
+..+..+.+||++++++++|++|++|++|++++|++++++|+|++|.||++++++++++|++++|+|||++.
T Consensus 305 ~~~~~~~~~er~~~~l~~~g~SitiTslT~~~aF~ig~~t~~pav~~Fc~~~a~av~f~~i~~it~f~a~l~l~~~re~~ 384 (798)
T PF02460_consen 305 RTSPDLSVEERMAETLAEAGPSITITSLTNALAFAIGAITPIPAVRSFCIYAALAVLFDFIYQITFFPAILVLDGRREAA 384 (798)
T ss_pred hhchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 998889999999999999999999999999999999999999999999999999999999999999999990
Q ss_pred ------------------------------------------hcccccCCccchhhHHHHHHHHHHHHHHhhhccccccc
Q 007203 153 ------------------------------------------VHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLE 190 (613)
Q Consensus 153 ------------------------------------------~~~~~l~~~~~k~~vl~~~~~l~~~si~g~~~l~~~~~ 190 (613)
.|+|++.+++.|.++++++++++.+|+||+.+++.|+|
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~l~~~~~k~~vll~~~~yl~~siyG~~~i~~gld 464 (798)
T PF02460_consen 385 GRHDCFCCIKKKESPSECSSESSEPSSPSEKSEPSLSRFFRDYYAPFLTSPWVKIFVLLLFLIYLGVSIYGCTQIKEGLD 464 (798)
T ss_pred cccccccccchhhhhhhhccccccccccccchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcccCCCCC
Confidence 13566778888999999999999999999999999999
Q ss_pred ccccCCCCchhhhHHHHHHHhh-ccCCCEEEEEec-CCCCchhhhhhhhhcccccCchhhHHHHHHhccCCCCccccCCC
Q 007203 191 QQIVLPRDSYLQGYFDNTTEYL-RVGPPLYFVVKD-YNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPELSYIAKPA 268 (613)
Q Consensus 191 ~~~~~p~ds~~~~~~~~~~~~f-~~~~~~~iv~~~-~d~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~ 268 (613)
+++++|+||++.++++..+++| +.+.++++++++ +|++++. +++++ .++.+++ ++.+.. ...+.+
T Consensus 465 ~~~l~p~dSyl~~~~~~~e~yf~~~g~~v~V~v~~~~d~~~~~-~~~~l--------~~lv~~f---e~~~~~-~~~~~t 531 (798)
T PF02460_consen 465 PEKLFPDDSYLQKFFRLQEKYFFSYGPPVYVVVNNPPDYSDPE-NQDRL--------NSLVQEF---ENSPYS-IGNNST 531 (798)
T ss_pred hhhccCCCChhHHHHHHHHHHhhccCceEEEEecCCCCccchH-HHHHH--------HHHHHHH---hccccc-cccccc
Confidence 9999999999999999998888 456788888875 6888864 34432 1244444 433321 223356
Q ss_pred CchHHHHHhhcCCCcccccccccCCccCCCCCCCCCCCCCCCCCCCCCcccCCCcccccCCCCCCCCChhHHHhhhHHHH
Q 007203 269 ASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVCKDCTTCFRHSDLVNNRPSTEQFREKLPWFL 348 (613)
Q Consensus 269 ~~wl~~f~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~~~l~~~l 348 (613)
.+|+++|.+|+++.+ .... +++ +.+.|++.+++|+
T Consensus 532 ~~WL~~y~~~l~~~~---------~~~~-~~~-----------------------------------~~~~~~~~l~~FL 566 (798)
T PF02460_consen 532 SFWLRDYLNFLNSIN---------SSFQ-DDN-----------------------------------DKEFFYNLLPEFL 566 (798)
T ss_pred hhhHHHHHHHHhhcc---------cccc-ccc-----------------------------------cceeeeccchhhh
Confidence 799999999986421 1000 000 0012344455566
Q ss_pred hhCCCccccCCCCCccccccccc--CCCCCeEEeeEEEEecccCCChhHHHHHHHHHHHHHHHhhhccCcccccccceee
Q 007203 349 NALPSADCAKGGHGAYSTSVDLN--GYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYI 426 (613)
Q Consensus 349 ~~~p~~~~~~~~~~~y~~~~~~~--~~~~~~i~~s~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~ 426 (613)
+. |+. +.|.+++.++ +++...|.++|+.+..++..+.++..+.++++|++++++++ .++++++..+.
T Consensus 567 ~~-~~~-------~~~~~di~~~~~~~~~~~I~a~rf~~~~~~~~~~~~~~~~~~~~R~i~~~~~~---~~~~~~~~~~~ 635 (798)
T PF02460_consen 567 NS-PEY-------RHYSNDIKFDDSDNDTTQISAFRFTTQLKNLSDWSDRIEAMKDWRQIADKYSD---FNVFVFSPFFI 635 (798)
T ss_pred cc-ccc-------cccccccccccccCCccceeeEEEEEEccCCCCHHHHHHHHHHHHHhhhccee---cceEeeccchh
Confidence 53 221 2355566554 33456789999999888988999999999999999988764 55667777888
Q ss_pred ehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhHhcccc
Q 007203 427 FFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEF 506 (613)
Q Consensus 427 ~~~~~~~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l~i~~~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~ 506 (613)
++||+..+.++.+++++++++++++++++++.++..++++.++++++.++++|+|++||++||++|++.++|+||++|||
T Consensus 636 ~~dq~~~i~~~~~~~~~~a~~~~~~v~~l~~~~~~~~~~~~~~i~~i~~~v~G~m~~~g~~l~~vs~v~l~~~iG~sVd~ 715 (798)
T PF02460_consen 636 FYDQYLSIVPETIQNIGIALVCMFVVCLLFIPNPRSSLIVTLSILSIDVGVIGFMSLWGVDLDPVSMVNLIMSIGFSVDF 715 (798)
T ss_pred hHhhhhhcchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHhchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007203 507 CVHIVHAFLVSHG-NRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVI 585 (613)
Q Consensus 507 sih~~~~~~~~~~-~~~~a~~~al~~~g~~v~~~~~ltt~~gf~~L~fs~~~~~~~f~~~~~~~~~~~~l~~~l~~lP~l 585 (613)
++|++++|.+.++ ++++|+++|++++|+|+++|+ +||++|+++|+|+++++++.|| +++.+++++|++|++++||++
T Consensus 716 ~~Hi~~~f~~~~~~~~~~r~~~al~~~g~pv~~~~-~st~l~~~~l~f~~~~~~~~ff-~~~~l~~~~~~~hglv~lPv~ 793 (798)
T PF02460_consen 716 SAHIAYAFVHSQGSTRDERVAEALSSMGWPVLQGA-LSTFLGVLPLAFSPSYIFRVFF-KTVFLVIIFGLLHGLVFLPVL 793 (798)
T ss_pred HHHHHHHheecccchHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999876 899999999999999999998 6999999999999999999874 566667899999999999999
Q ss_pred HHhh
Q 007203 586 LSLF 589 (613)
Q Consensus 586 l~~~ 589 (613)
|+++
T Consensus 794 ls~~ 797 (798)
T PF02460_consen 794 LSLF 797 (798)
T ss_pred HHhc
Confidence 9986
No 5
>KOG1935 consensus Membrane protein Patched/PTCH [Signal transduction mechanisms]
Probab=100.00 E-value=3e-59 Score=501.00 Aligned_cols=565 Identities=28% Similarity=0.470 Sum_probs=454.8
Q ss_pred CeeeehhhcCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhheeeeeccccHhHHHHHHH
Q 007203 1 MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVK 80 (613)
Q Consensus 1 ~~~y~~~~~~~~~~~~~~~v~s~~~l~~~~l~~~~~a~~~~~Gl~~~~g~~~~~~~~~~~p~l~l~igvd~~~~l~~~~~ 80 (613)
|.+|..+.++|| .++++|+.-++++|++.+.+|.+.++|++.++|+.||..++.++|||-+|+|+||+|.+.|+|+
T Consensus 422 m~~ya~~t~lr~----~~~~~sq~~vglaGVllv~~ssaaGLGl~t~lGI~FNAAtTQVvPFLaLGlGVDd~FlL~hay~ 497 (1143)
T KOG1935|consen 422 MVAYACLTQLRW----WDAVQSQGSVGLAGVLLVTFSSAAGLGLATLLGIEFNAATTQVVPFLALGLGVDDMFLLLHAYR 497 (1143)
T ss_pred HHHHHHHHHHHh----hhhhccccchhhhhhhhhhhHhhcchhHHHHhceeeccccceeehhhhhccChhHHHHHHHHHH
Confidence 446777777774 4699999999999999999999999999999999999988899999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q 007203 81 RQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIE-------- 152 (613)
Q Consensus 81 ~~~~~~~~~~~i~~~l~~~g~~i~~tslTt~~~F~~~~~s~ip~ir~Fgi~~aigv~~~~v~~lt~~pall~-------- 152 (613)
|..+. ++++++.|+|+|+++++||+.++.+|+.+.+.|+|++|.||..+|+-+.++|+..+++|||++.
T Consensus 498 e~~~~---~~~~~~~lk~tG~Svl~tsinni~aF~~aallPIPALrsFclQaaIvl~fnfia~llifPAiisiDLrRr~~ 574 (1143)
T KOG1935|consen 498 EVVKL---HEEMGELLKETGMSVLLTSINNILAFLMAALLPIPALRSFCLQAAIVLTFNFIAVLLIFPAIISIDLRRRKA 574 (1143)
T ss_pred HHhhh---HHHHHHHHHHhCcchhHHHhhhHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence 97665 8999999999999999999999999999999999999999999999999999999999999990
Q ss_pred --------------------------------------------------------------hcccccCCccchhhHHHH
Q 007203 153 --------------------------------------------------------------VHAPILGLWGVKMVVVSV 170 (613)
Q Consensus 153 --------------------------------------------------------------~~~~~l~~~~~k~~vl~~ 170 (613)
+|.|++.+.+.|..++..
T Consensus 575 ~r~Di~cc~~~~p~~~~~~~~p~~v~~~~~~s~~~~~~g~tr~~~~~~~~~a~wsl~~Fa~~~y~Pfl~k~~~K~~vivg 654 (1143)
T KOG1935|consen 575 GRRDIFCCFRGNPEMATSQSVPSNVSNNTLASIMQEPDGSTRALLAQSSHSAPWSLASFARYHYIPFLLKPAVKVAVIVG 654 (1143)
T ss_pred cccceeEeccCCcccCcCCCCCcccCCCcccccccCCCcchhhhhccCCCCCCccHHHHHHHHhhHHhhcchhHhHHHHH
Confidence 256889999999999999
Q ss_pred HHHHHHHHHHhhhcccccccccccCCCCchhhhHHHHHHHhhccCCCEEEEEec-CCCCchhhhhhhhhcccccCchhhH
Q 007203 171 FLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVKD-YNYSSESRHTNQLCSISQCDSNSLL 249 (613)
Q Consensus 171 ~~~l~~~si~g~~~l~~~~~~~~~~p~ds~~~~~~~~~~~~f~~~~~~~iv~~~-~d~~~~~~~~~~~~~~~~~~~~~l~ 249 (613)
|++++++|+||.++.+.|++..+.+|++++..++.+..++||+.+ |++.|.++ .||.+.+ + ++
T Consensus 655 ~~allg~slyg~t~~~~GLel~DvvP~~t~~~~FL~Aq~kyFsfY-~m~aVtqg~~dyp~qQ---~------------ll 718 (1143)
T KOG1935|consen 655 FLALLGASLYGMTRSTDGLELTDVVPEHTAEAAFLRAQDKYFSFY-PMFAVTQGPFDYPHQQ---Q------------LL 718 (1143)
T ss_pred HHHHHHhhhhheeeecccchhhhcCCCCCcHHHHHHHHhhhcccc-hhheeecCCCCcccHH---H------------HH
Confidence 999999999999999999999999999999999999999999875 79999987 6766432 2 22
Q ss_pred HHHHHhccCCCCccccC-----CCCchHHHHHhhcCCC--ccccc---ccccCCccCCCCCCCCCCCCCCCCCCC-----
Q 007203 250 NEISRASSIPELSYIAK-----PAASWLDDFLVWTSPE--AFGCC---RKFVNGTYCPPDDQPPCCSPDEEPCGV----- 314 (613)
Q Consensus 250 ~~i~~~~~~~~~~~~~~-----~~~~wl~~f~~~~~~~--~~~~~---~~~~n~~~~~~~~~~~~~~~~~~~~~~----- 314 (613)
+++.+ ++...+|+.+ -...|+.-|++|+... .||.+ .++.-.++.++. . ++..+.+
T Consensus 719 ~dyh~--sf~s~k~vik~~n~~l~~~Wl~~~r~WL~~lq~~fded~a~G~~~~~~~v~n~-S------~d~~lA~kL~~q 789 (1143)
T KOG1935|consen 719 DDYHQ--SFGSSKYVIKNENEQLPKYWLHLFRDWLQSLQRAFDEDWAKGRFTLTSGVSNG-S------EDARLAYKLLCQ 789 (1143)
T ss_pred HHHHH--HhccCceeecCCCCCCchHHHHHHHHHHHHHHHHHHHHHhcCccccccCCCCC-C------hHHHHHHHHHHh
Confidence 33321 1222223322 2368999999998652 22211 111111111110 0 0011111
Q ss_pred -CCcccCCCcccccCCC-CCCCCChhHHHhhhHHHHhhCCCc-cccCC----CCCccccccccc--CCCCCeEEeeEEEE
Q 007203 315 -NGVCKDCTTCFRHSDL-VNNRPSTEQFREKLPWFLNALPSA-DCAKG----GHGAYSTSVDLN--GYESGIIQASEFRT 385 (613)
Q Consensus 315 -~~~~~~~~~~~~~~~~-~~~~p~~~~f~~~l~~~l~~~p~~-~~~~~----~~~~y~~~~~~~--~~~~~~i~~s~~~~ 385 (613)
+.+ .+|...+.+.++ ..++.+++.||++|..|.+.-|-- ..+.+ .+..|..+.+.. -....++..++|.+
T Consensus 790 tG~~-~~~~~~l~k~rlVd~giInp~~FYnyLTaW~~~D~~~y~aSQa~~yP~pP~w~h~~~~~~~iP~aePl~yaQmPF 868 (1143)
T KOG1935|consen 790 TGSL-DNDAGRLGKIRLVDAGIINPEAFYNYLTAWFNNDPMAYYASQASFYPTPPEWEHDNDYAKEIPAAEPLEYAQMPF 868 (1143)
T ss_pred cCCc-cchhHhhhhhhhhhccccCHHHHHHhhhhhcccchHHhhhhccCCCCCCccccccccccccccccccchhccCch
Confidence 111 123333333332 225667899999997554421100 00000 001121111110 12344455677888
Q ss_pred ecccCCChhHHHHHHHHHHHHHHHhhhccCcccccccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHH
Q 007203 386 FHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAI 465 (613)
Q Consensus 386 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~ 465 (613)
+..++.+..++.+.|+.+|..+.++.+ .|...|+.|.+++|+||+..+..+.++.+.+-++.++.+|.++.-+.+.+.+
T Consensus 869 yL~gL~dTa~Ivk~I~~iR~~c~~~~s-~Gl~nyPsGiPF~FWEQYl~Lrg~l~~~IcIil~~vf~vcs~ll~npWaA~L 947 (1143)
T KOG1935|consen 869 YLNGLTDTADIVKAIESIRASCEEYTS-LGLPNYPSGIPFTFWEQYLTLRGNLLQAICIILLAVFCVCSVLLLNPWAAGL 947 (1143)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHhhccc-CCCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHH
Confidence 888999999999999999999999984 7999999999999999999999999999999999999999988889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007203 466 ILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVSHGNRNQRSQKALSTMGASVFSGITLTKL 545 (613)
Q Consensus 466 ~~l~i~~~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~~~~~~~~~~~~~a~~~al~~~g~~v~~~~~ltt~ 545 (613)
++..+.+.....+|+|++.||++|+++.++++.++|++|++++|+.-.|....+++.+|..-++..+..|+..++ ++|.
T Consensus 948 iv~sL~~mt~eL~G~Mgl~GIKlS~i~aViLi~sVGigveFtvhv~l~FlTs~G~rs~R~s~al~~~F~Pv~hG~-lST~ 1026 (1143)
T KOG1935|consen 948 IVCSLAIMTVELFGFMGLLGIKLSAIPAVILIASVGIGVEFTVHVALGFLTALGTRSQRASSALQHMFVPVSHGA-LSTL 1026 (1143)
T ss_pred HHHHHHHHHHHHHHHHHhhceeeccchhHHHHHHhhhchhhhHHHHHHHHHhhccchhHhHHhhhhcchhhhhhH-HHHH
Confidence 999888889999999999999999999999999999999999999999999999999999999999999999999 7999
Q ss_pred HHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCccccccc
Q 007203 546 VGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPSRHIIIEK 600 (613)
Q Consensus 546 ~gf~~L~fs~~~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~~~~~~~~~~~~ 600 (613)
+|..+|.++++..+..+||..+.+.+++|.+++|+++|++|+++||+++.....+
T Consensus 1027 lgv~MLs~S~FdFvVryFf~~ltvl~~lGv~ngL~~lPVlLS~~GP~pEl~p~~g 1081 (1143)
T KOG1935|consen 1027 LGVLMLSFSEFDFVVRYFFAVLTVLTCLGVLNGLVVLPVLLSLVGPKPELSPTDG 1081 (1143)
T ss_pred hhHheeccCchhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCCcccccCCC
Confidence 9999999999999888878777777889999999999999999999999877644
No 6
>KOG1933 consensus Cholesterol transport protein (Niemann-Pick C disease protein) [Lipid transport and metabolism]
Probab=100.00 E-value=2.1e-62 Score=558.96 Aligned_cols=581 Identities=53% Similarity=0.915 Sum_probs=527.4
Q ss_pred CeeeehhhcCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhheeeeeccccHhHHHHHHH
Q 007203 1 MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVK 80 (613)
Q Consensus 1 ~~~y~~~~~~~~~~~~~~~v~s~~~l~~~~l~~~~~a~~~~~Gl~~~~g~~~~~~~~~~~p~l~l~igvd~~~~l~~~~~ 80 (613)
||.|+..++|+...+++..++||..+++.|+..+.+++..++|+..++|++-+.+...++||+++++|+|+.+.++++|+
T Consensus 559 mf~yi~~~Lg~~~~~r~vlidSkv~lgi~Gv~ivl~sv~~S~g~FS~~gi~~t~i~i~VipflVlavgvdnifilv~~~q 638 (1201)
T KOG1933|consen 559 MFLYINLALGHYRSCRRVLIDSKVLLGISGVLIVLLSVVCSVGFFSYLGITSTLIIIEVIPFLVLAVGVDNIFILVHTYQ 638 (1201)
T ss_pred HHHHHHHHhccCcccceeeeeceeeccccceEEEeechhhhhhHHHhhcchhhheeeeeeeeEEEEEeeccEEEEEeeec
Confidence 78999999999999889999999999999999999999999999999999999888899999999999999999999998
Q ss_pred hcCC--CCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 007203 81 RQPM--ELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIE------ 152 (613)
Q Consensus 81 ~~~~--~~~~~~~i~~~l~~~g~~i~~tslTt~~~F~~~~~s~ip~ir~Fgi~~aigv~~~~v~~lt~~pall~------ 152 (613)
|..+ +.+.++++..++.++||+|+.+++.....|+.+.++++|++|.|+++++++++++++.+++.+.+++.
T Consensus 639 r~~~~~~~~~~~~I~~~l~~~~Psil~~slse~~~ff~g~~~~mPav~~fal~a~lavLld~llq~t~fv~l~~~D~kR~ 718 (1201)
T KOG1933|consen 639 RDGRSKSEPLEQRIGSVLGEVGPSILLSSLSENFCFFLGAFVDMPAVRVFALYAGLAVLLDFLLQITAFVALIVLDAKRR 718 (1201)
T ss_pred ccccccCCCcccccchhhhccCcHHHHhHHHhhhHHhhhhcccCcceeeeHHHHHHHHHHHHHHHHhhhhhcccccchhh
Confidence 7644 37899999999999999999999999999999999999999999999999999999999999999881
Q ss_pred --------------------------------hcccccCCccchhhHHHHHHHHHHHHHHhhhcccccccccccCCCCch
Q 007203 153 --------------------------------VHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSY 200 (613)
Q Consensus 153 --------------------------------~~~~~l~~~~~k~~vl~~~~~l~~~si~g~~~l~~~~~~~~~~p~ds~ 200 (613)
.|+|++.+++.|..+++.|.+++.+++++..+++.|.|++--+|+||+
T Consensus 719 ~~~r~d~~~~~~~~~~~~~~~~~~~~~~ffk~~~ap~Ll~~~~ri~v~~~F~a~~~~s~~~~~rid~GldQ~la~pe~Sy 798 (1201)
T KOG1933|consen 719 LDNRIDIFCCVKPSEEESVRGNEGLLTRFFKNVYAPFLLHKIVRIWVAIIFFALFFISLAGTPRIDFGLDQELAVPESSY 798 (1201)
T ss_pred hcCCcceEecccccccccccccchhHHHHHHHHHHHHHhhccceeeeehhhhhhhhhhhcccccccccccceEeecccch
Confidence 256888999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhhccCCCEEEEEec-CCCCchhhhhhhhhcccccCchhhHHHHHHhccCCCCccccCCCCchHHHHHhhc
Q 007203 201 LQGYFDNTTEYLRVGPPLYFVVKD-YNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPELSYIAKPAASWLDDFLVWT 279 (613)
Q Consensus 201 ~~~~~~~~~~~f~~~~~~~iv~~~-~d~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~wl~~f~~~~ 279 (613)
+.++++.++++++.++|+|+|+|+ .+++++. .||++|.+.+|+++++.+.+..+.+.+|.+|++++..+|++||.+|+
T Consensus 799 l~dyF~~~~e~l~~GPPvyfv~k~~~~~s~~~-~Qn~iC~~~~c~~~s~~~~i~~~~~~~e~t~~s~~~~~W~ddyl~w~ 877 (1201)
T KOG1933|consen 799 LSDYFKNLNEFLNVGPPVYFVLKGGLDLSSPK-DQNLICSIAGCNDNSLRNQIASAAEAPEQTYISRPASSWLDDYLVWL 877 (1201)
T ss_pred hhhHhhhhhhhcccCCCEEEEecCCCCCCChh-cccceecccccCCcchhhhhhhcccCCcceeeccccccccchhheee
Confidence 999999999999999999999996 6777764 67999999999999999999999889999999999999999999999
Q ss_pred CCCcccccc-cccCCccCCCCCCCCCCCCCCCCCCCCCcccCCCcccccCCCCCCCCChhHHHhhhHHHHhhCCCccccC
Q 007203 280 SPEAFGCCR-KFVNGTYCPPDDQPPCCSPDEEPCGVNGVCKDCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAK 358 (613)
Q Consensus 280 ~~~~~~~~~-~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~~~l~~~l~~~p~~~~~~ 358 (613)
.++.+ ||| +..++.+++++.+. .+|..|...++....+|+.++|+++|++|+++.|+.+|.+
T Consensus 878 ~~~~~-cCr~~~~~g~fc~~~~~~----------------~~c~~c~~~~~~~~~~Ps~~~F~~~L~~fln~~p~~~C~~ 940 (1201)
T KOG1933|consen 878 SPQSS-CCRLKPDPGQFCPPSLND----------------ERCSPCRITSNSLSNRPSIEQFYKYLPWFLNDTPSSECAK 940 (1201)
T ss_pred cccCC-ccccCCCCCCcCCCCccc----------------ccCCccccCCcccccCccHHHHhhhchhhccCCCCcccCC
Confidence 98765 998 66667788765432 3345444445555568999999999999999999999999
Q ss_pred CCCCcccccccccCCCCCeEEeeEEEEecccCCChhHHHHHHHHHHHHHHHhhhcc-CcccccccceeeehhhHHHHHHH
Q 007203 359 GGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTL-KINIFPYSVFYIFFEQYLDIWRV 437 (613)
Q Consensus 359 ~~~~~y~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~i~~~ 437 (613)
|++..|+..+++.....+.|+++.|+.+|+++.++.|+++++++.|++..+..+.. +.+++++...+.++||+..++++
T Consensus 941 gg~a~y~~av~l~~~~~~~iqas~F~tyh~~l~ns~d~~~alr~ar~~s~~i~r~~~~~~vfpys~fy~fyEqylti~~~ 1020 (1201)
T KOG1933|consen 941 GGHAAYSSAVSLTFTHEGGIQASYFMTYHTPLSNSSDFIKALRAARKLSADITRSLKGVEVFPYSVFYSFYEQYLTIWTD 1020 (1201)
T ss_pred CCceeeecceEEEecCcccchhhhhhhhccccccHHHHHHHHHHhhhhhhhhhhcccccceeeeeeehhHHHHHHHHhhh
Confidence 99999999998876656669999999999999999999999999999998876432 67899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh-cCchhHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHHHHHHH
Q 007203 438 ALINIAVALGAIFIVCLLMT-SSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLV 516 (613)
Q Consensus 438 ~~~~~~~~~~~v~vv~~l~~-~s~~~~~~~~l~i~~~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~~~~~~ 516 (613)
....+.++++.+|++...++ .+++.+++..+.+.+.++-..|+|+.||+.+|.+|++.++|++|++|||..|+.+.|..
T Consensus 1021 ~~~~l~i~i~~iF~v~~~~l~~~~~ss~i~~~~~~~~~v~l~g~m~~~~I~~NavS~vNlvm~vgi~vef~~hi~~sf~~ 1100 (1201)
T KOG1933|consen 1021 TLTNLGIDIVAIFLVTSVLLGLDVDSSLIMVLVDEMILVNLVGFMYLWGISLNAVSLVNLVMSVGIAVEFCVHITHSFAT 1100 (1201)
T ss_pred hhhhhhHHHHHHHHHHHHhhccccccceeeeeehhhhhhhHHHHHHhhceeehhhhhhhhhhhcchhhhHHHHhhcceee
Confidence 99999999999998887766 56888888888899999999999999999999999999999999999999999999988
Q ss_pred hcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcc
Q 007203 517 SHG-NRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPSRH 595 (613)
Q Consensus 517 ~~~-~~~~a~~~al~~~g~~v~~~~~ltt~~gf~~L~fs~~~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~~~~~~~ 595 (613)
..+ ++.+|+++++..+|..++.+-++|...|..+|.|.++.+++.|+++|.+..++++.+|+++++|++++.+++...+
T Consensus 1101 s~~~~~~~ra~~~l~s~Gs~v~sgitlt~~~~~~vl~fa~s~i~~~~~f~~~l~~~l~~a~hGliflpvlls~~g~~~~~ 1180 (1201)
T KOG1933|consen 1101 SSGPDATERAEEALNSIGSSVFSGITLTKFGGIIVLSFAKSQIFQVFYFRMYLGIVLVGALHGLIFLPVLLSLLGPESSR 1180 (1201)
T ss_pred ccCCchhHHHHHHHhccCcceecceeehhcCceEEEeeccccEEEEEeehHHHHHHHHHheeeeeehhhHHHhcCCcccc
Confidence 765 8999999999999999998866788899999999999999999899998889999999999999999999987766
Q ss_pred cccc
Q 007203 596 IIIE 599 (613)
Q Consensus 596 ~~~~ 599 (613)
.+..
T Consensus 1181 ~~~~ 1184 (1201)
T KOG1933|consen 1181 ADSR 1184 (1201)
T ss_pred chhh
Confidence 6544
No 7
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=100.00 E-value=1.9e-57 Score=505.20 Aligned_cols=481 Identities=19% Similarity=0.305 Sum_probs=375.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhheeeeeccccHhHHHHHHHhcC-CCCCHHHHHHHHHhhhh
Q 007203 22 SKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP-MELVLETRISNALVEVG 100 (613)
Q Consensus 22 s~~~l~~~~l~~~~~a~~~~~Gl~~~~g~~~~~~~~~~~p~l~l~igvd~~~~l~~~~~~~~-~~~~~~~~i~~~l~~~g 100 (613)
++++-++++++++++|++|++|+|+|+|+|++. .++..|.+++|+|+||++|++|||.|++ ++.+++||+.+|++++|
T Consensus 218 r~~~~~llpL~~~l~sv~~tlG~m~llG~plt~-~s~~~~~llIgiGidy~vh~~nr~~ee~~~~~~~~eAv~~ai~~~g 296 (727)
T COG1033 218 RSVRRALLPLIIVLVSVLWTLGAMGLLGIPLTI-TTSAVPPLLIGIGIDYGVHFHNRYEEERRKGRTVEEAVVEAIKHTG 296 (727)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhCCCchh-HHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhc
Confidence 455567999999999999999999999999997 8888999999999999999999998875 46889999999999999
Q ss_pred hHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---c---------c------------
Q 007203 101 PSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVH---A---------P------------ 156 (613)
Q Consensus 101 ~~i~~tslTt~~~F~~~~~s~ip~ir~Fgi~~aigv~~~~v~~lt~~pall~~~---~---------~------------ 156 (613)
+|+++|.+||++||+++.++.+|++|+||+.+++|++.+++.+++++|+++..+ . +
T Consensus 297 ~avl~a~lTT~~GF~Sl~~s~i~~i~~~Gi~~siGi~la~l~sl~~lp~ll~~~~~~~~~~~~~k~~~~~~~~~~l~~i~ 376 (727)
T COG1033 297 PAVLIAALTTAAGFLSLLTSSIPAIKEFGILLSIGIILAFLSSLTVLPALLILIPKGRKKREEKKDSKKGKLEKRLSKIA 376 (727)
T ss_pred cHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHhhhhhhhcccccchhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999977211 0 0
Q ss_pred -ccCCccchhhHHHHHHHHHHHHHHhhhcccccccccccCCCCchhhhHHHHHHHhhccCCCEEEEEecCCCCchhhhhh
Q 007203 157 -ILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVKDYNYSSESRHTN 235 (613)
Q Consensus 157 -~l~~~~~k~~vl~~~~~l~~~si~g~~~l~~~~~~~~~~p~ds~~~~~~~~~~~~f~~~~~~~iv~~~~d~~~~~~~~~ 235 (613)
...+ +++.++++.+++.+++.||..+++.++|.++++|+|+|..+.++.++++|++..+.+++++..|..||+ ..+
T Consensus 377 ~~~~~--~~~~~L~vali~~~~~~yg~~~v~~~~d~~k~~p~d~p~~~~~~~i~~~~ggs~~~~i~~~~~d~~dp~-~l~ 453 (727)
T COG1033 377 KIIAR--HPVTVLVVALIIVGVSLYGASKVKIETDIEKYLPQDLPALKALDFIEKEFGGSDPITIVLEAEDVRDPE-VLR 453 (727)
T ss_pred HHhHh--hhHHHHHHHHHHHHHHHhhhhhcccccchHhhcCCCcHHHHHHHHHHHHcCCCceEEEEEECCCCCChH-HHH
Confidence 0111 234567777788889999999999999999999999999999999999999998999999987766663 222
Q ss_pred hhhcccccCchhhHHHHHHhccCCCCccccCCCCchHHHHHhhcCCCcccccccccCCccCCCCCCCCCCCCCCCCCCCC
Q 007203 236 QLCSISQCDSNSLLNEISRASSIPELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVN 315 (613)
Q Consensus 236 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~wl~~f~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 315 (613)
. .+++.+.+++.+ +..... +.+-+..+. .|+..
T Consensus 454 ~--------md~l~~~l~~~~------~~V~s~-~siv~~vk~------------~~~~~-------------------- 486 (727)
T COG1033 454 W--------MDELEEELEKGE------EHVFSA-SSIVDLVKQ------------VNGGI-------------------- 486 (727)
T ss_pred H--------HHHHHHHHHhcc------eeeecc-chHHHHHHH------------HhcCC--------------------
Confidence 1 122333333211 101011 112222111 11110
Q ss_pred CcccCCCcccccCCCCCCCCChhHHHhhhHHHHhhCCCccccCCCCCcccccccccCCCCCeEEeeEEEEecccCCChhH
Q 007203 316 GVCKDCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGD 395 (613)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~p~~~~f~~~l~~~l~~~p~~~~~~~~~~~y~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~ 395 (613)
.|+..+ ++.-++..|+.. .++|- +| +.....+. ......+|
T Consensus 487 ------------------~p~~~~----~~~i~~~~~~~~-----~~~~~-----s~---~~~~~~~~----~~~~~~~~ 527 (727)
T COG1033 487 ------------------IPDKSK----IQIILEELPESI-----KKRYI-----SG---DQLNLLGY----SLGDTQGE 527 (727)
T ss_pred ------------------CCcchh----HHHHHHhcchhH-----hhccc-----CC---Cceeeeec----ccccchhH
Confidence 122111 111122223211 11121 11 10000011 11123345
Q ss_pred HHHHHHHHHHHHHHhhhccCcccccccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHH
Q 007203 396 YVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVI 475 (613)
Q Consensus 396 ~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l~i~~~~~ 475 (613)
.....++..+..++...+.|++++.+|.++.+.+..+.+.+++..+..+++++|++++++.+||+..++.+++|+.+++.
T Consensus 528 ~~~~~~~~~~~i~~~~~~~gv~~~vtG~~vi~~~m~~~i~~sq~~~t~l~~~~V~~ll~i~fRs~~~~i~~iipi~~~v~ 607 (727)
T COG1033 528 LEDVGREILRDIEKENIPTGVKVYVTGESVIYVEMNELLTSSQLISTVLGIILVFALLLIIFRSPLKAIIPLIPIAIVVG 607 (727)
T ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEcCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhchHHhHHHHHHHHHHHH
Confidence 55555444443444333468889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHHHHHHHhcC-C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007203 476 DLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVSHG-N-RNQRSQKALSTMGASVFSGITLTKLVGVIVLCF 553 (613)
Q Consensus 476 ~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~~~~~~~~~-~-~~~a~~~al~~~g~~v~~~~~ltt~~gf~~L~f 553 (613)
|.+|+|+++|+++|+.|+....+.+|+||||+||+++||++|++ . +++|+.+|++++|++++.++ +||+.||+.|.+
T Consensus 608 ~~~~~M~l~gI~~~~~ta~v~ai~lGiGvDYsIh~~ery~eer~~~~~~eAi~~t~~~~G~ail~s~-ltt~~GF~aLi~ 686 (727)
T COG1033 608 WNFGLMGLLGIPLTPATATLGAIILGIGVDYSIHITERYREERKKGGPKEAIETTVERTGKAILASA-LTTAIGFLALIF 686 (727)
T ss_pred HHHHHHHHhCCchhHHHHHHHHHhhhccchhhhHHHHHHHHHHhcCCchHHHHHHHHhhchHHHHHH-HHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999863 3 89999999999999999998 799999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 007203 554 ARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPSR 594 (613)
Q Consensus 554 s~~~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~~~~~~ 594 (613)
|+++++.+|+. +...+++++++.+++++|+++.++.++.+
T Consensus 687 S~f~i~snfGl-l~~~~il~sl~asl~~lPall~~~~~~~~ 726 (727)
T COG1033 687 SPFPIISNFGL-LTVIGILLSLLASLVLLPALLVLLDGRRK 726 (727)
T ss_pred cCCHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHhhcccc
Confidence 99999999854 55567999999999999999999987654
No 8
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=100.00 E-value=5.8e-48 Score=447.10 Aligned_cols=472 Identities=14% Similarity=0.163 Sum_probs=354.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhheeeeeccccHhHHHHHHHhc-CCCCCHHHHHHHHHhhhhh
Q 007203 23 KVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGP 101 (613)
Q Consensus 23 ~~~l~~~~l~~~~~a~~~~~Gl~~~~g~~~~~~~~~~~p~l~l~igvd~~~~l~~~~~~~-~~~~~~~~~i~~~l~~~g~ 101 (613)
+++.++.+++++.++++|++|+++++|++++. .+.++|.+++|+|+||++|++++|+|+ .++.+++|+++++++++|+
T Consensus 216 s~~~~~~~l~~~~~~~~~~~g~~~~~g~~l~~-~~~~~~~l~lgi~vd~~ihl~~r~~~~~~~g~~~~~ai~~a~~~~g~ 294 (719)
T TIGR00921 216 RWWRPLLPLVIILFGVAWVLGIMGWLGIPLYA-TTLLAVPMLIGVGIDYGIQTLNRYEEERDIGRAKGEAIVTAVRRTGR 294 (719)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhccH
Confidence 34567889999999999999999999999997 778888889999999999999999876 5678999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---c-----------------------
Q 007203 102 SITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVH---A----------------------- 155 (613)
Q Consensus 102 ~i~~tslTt~~~F~~~~~s~ip~ir~Fgi~~aigv~~~~v~~lt~~pall~~~---~----------------------- 155 (613)
|+++|++||++||+++.++++|++|+||+++++|++++++.+++++|+++... .
T Consensus 295 ~i~~t~~t~~~gf~~l~~s~~~~~~~~g~~~~~gv~~~~l~~l~~lPall~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 374 (719)
T TIGR00921 295 AVLIALLTTSAGFAALALSEFPMVSEFGLGLVAGLITAYLLTLLVLPALLQSIDIGREKVKKEIIAIGGKSSEIEEELSK 374 (719)
T ss_pred HHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccccCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998311 0
Q ss_pred --cccCCccchhhHHHHHHHHHHHHHHhhhcccccccccccCCCCchhhhHHHHHHHhhccC-CCEEEEEecCCCCchhh
Q 007203 156 --PILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVG-PPLYFVVKDYNYSSESR 232 (613)
Q Consensus 156 --~~l~~~~~k~~vl~~~~~l~~~si~g~~~l~~~~~~~~~~p~ds~~~~~~~~~~~~f~~~-~~~~iv~~~~d~~~~~~ 232 (613)
.+..++ ++.++++.+++.+++.++..+++.+.|+.+++|+|++.++.++.++++|++. .+.++++++.+..+++
T Consensus 375 ~~~~~~r~--~~~vl~v~lll~~~~~~~~~~l~~~~d~~~~~p~~s~~~~~~~~l~~~f~~~~~~~~vvv~~~~~~~~~- 451 (719)
T TIGR00921 375 VLSITVRH--PVPALVAALIITGLGLYGAAGIKPEVNIEKFIPQDLPSLQARKVIESHMGGSHDFATILVKADDVRDPE- 451 (719)
T ss_pred HHHHHHhC--CcHhHHHHHHHHHHHHHhccCCCcccChhhcCCCCcHHHHHHHHHHHHhCCCCcceEEEEEcCCCCCHH-
Confidence 001122 2344556667778899999999999999999999999999999999999876 5788888876655542
Q ss_pred hhhhhhcccccCchhhHHHHHHhccCCCCccccCCCCchHHHHHhhcCCCcccccccccCCccCCCCCCCCCCCCCCCCC
Q 007203 233 HTNQLCSISQCDSNSLLNEISRASSIPELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPC 312 (613)
Q Consensus 233 ~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~wl~~f~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~ 312 (613)
..+++ +++.+++++ .++...+.++ ..+.++.+..+ +.. +
T Consensus 452 ~l~~l--------~~l~~~l~~---~~~v~~v~~~--~si~~~~~~~~------------~~~-~--------------- 490 (719)
T TIGR00921 452 LVRFM--------DELSRDIKA---TGVAARVFGA--PSIIDLVKEVE------------GLP-A--------------- 490 (719)
T ss_pred HHHHH--------HHHHHHHhh---ccccCcccCC--CCHHHHHHHhc------------CCC-C---------------
Confidence 11110 112222222 1111111111 11233222111 100 0
Q ss_pred CCCCcccCCCcccccCCCCCCCCChhHHHhhhHHHHhhCCCccccCCCCCcccccccccCCCCCeEEeeEEEEecccCCC
Q 007203 313 GVNGVCKDCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNK 392 (613)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~p~~~~f~~~l~~~l~~~p~~~~~~~~~~~y~~~~~~~~~~~~~i~~s~~~~~~~~~~~ 392 (613)
|+...+ +..|+.. .+.|. .++ . . ++.+...+. +
T Consensus 491 ----------------------~~~~~~--------~~lp~~~-----~~~~i-----~~~--~-~---~v~~~~~~~-~ 523 (719)
T TIGR00921 491 ----------------------PERSAL--------EPIPEDE-----EGGYI-----SGG--Q-I---KVAVIQVQL-K 523 (719)
T ss_pred ----------------------CCchHH--------HhCCHHH-----hccee-----cCC--c-e---EEEEEecCC-c
Confidence 000000 0011100 00110 000 0 0 111111111 1
Q ss_pred hhHHHHHHHHHHHHHHHhhhccCcccccccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHH
Q 007203 393 QGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVM 472 (613)
Q Consensus 393 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l~i~~ 472 (613)
..+..+..+++.+..++...+.|+++..+|.+.++.|..+.+.+++.....++++++++++++.+||++.++++++|+.+
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~~~~~~~~~~~i~~~~~~~~~l~~~~v~l~l~~~frs~~~~l~~~i~~~~ 603 (719)
T TIGR00921 524 QGEPKVQGRKILRDVQHEHPPPGVKVGVTGLPVAFAEMHELVNEGMRRMTIAGAILVLMILLAVFRNPIKAVFPLIAIGS 603 (719)
T ss_pred chhHHHHHHHHHHHHhccCCCCCcEEEecChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 22333344444332222222246778889998888888888888888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007203 473 IVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVSH--GNRNQRSQKALSTMGASVFSGITLTKLVGVIV 550 (613)
Q Consensus 473 ~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~~~~~~~~--~~~~~a~~~al~~~g~~v~~~~~ltt~~gf~~ 550 (613)
++++++|+|+++|+++|+.+++...+.+|++|||+||+++||+++. .+.++|++++++++|++++.++ +|+++||++
T Consensus 604 ~~~~~~g~~~~~gi~l~~~~~~~~~i~lGigvDy~i~~~~r~~~~~~~~~~~~ai~~a~~~~g~ai~~s~-lt~~~gf~~ 682 (719)
T TIGR00921 604 GILWAIGLMGLRGIPSFLAMATTISIILGLGMDYSIHLAERYFEERKEHGPKEAITHTMERTGPGILFSG-LTTAGGFLS 682 (719)
T ss_pred HHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhHHHHHHH-HHHHHHHHH
Confidence 9999999999999999999999999999999999999999999875 3788999999999999999998 699999999
Q ss_pred HhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007203 551 LCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSL 588 (613)
Q Consensus 551 L~fs~~~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~ 588 (613)
|++++.++++.|+. +...+++++++++++++|+++.+
T Consensus 683 l~~s~~~~~~~~g~-~~~~~i~~~~~~~l~llPall~~ 719 (719)
T TIGR00921 683 LLLSHFPIMRNFGL-VQGIGVLSSLTAALVVFPALLVL 719 (719)
T ss_pred HHhccCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999854 44567888999999999999863
No 9
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=100.00 E-value=4.8e-41 Score=394.69 Aligned_cols=535 Identities=14% Similarity=0.184 Sum_probs=353.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcccc----chhhhhhhhheeeeeccccHhHHHHHHHhc-CCCCCHHHHHHHHHhh
Q 007203 24 VLLGLSGVILVMLSVLGSVGFFSAIGVKS----TLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVE 98 (613)
Q Consensus 24 ~~l~~~~l~~~~~a~~~~~Gl~~~~g~~~----~~~~~~~~p~l~l~igvd~~~~l~~~~~~~-~~~~~~~~~i~~~l~~ 98 (613)
+..++.+++++.+++++++|++.++|.+. |.....+++.+++|+|+||++|++++|+|+ +++.++++++++++++
T Consensus 197 ~~~~llpl~~i~lsi~~~~g~~~~lg~~~~~~l~~~~~~~l~~l~lGl~vDy~I~lv~r~~ee~~~g~~~~~Av~~a~~~ 276 (910)
T TIGR00833 197 PITMLVPLVSVGFSVVVAQGIVSLLGIPGLIGVNAQTTVLLTALVIGAGTDYAVFLTGRYHEERRKGESLEEAAAEALRG 276 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34567888999999999999999999863 432233455778899999999999999987 4578899999999999
Q ss_pred hhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------------------c
Q 007203 99 VGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHAP---------------------I 157 (613)
Q Consensus 99 ~g~~i~~tslTt~~~F~~~~~s~ip~ir~Fgi~~aigv~~~~v~~lt~~pall~~~~~---------------------~ 157 (613)
+|++++.+++|+++||+++.++++|.+|+||+.+++|++++++.+++++|+++....+ +
T Consensus 277 ~g~~I~~s~lT~~~gf~~l~~~~~~~~~~~Gi~~a~gvl~a~l~~ltllPall~l~g~~~~~~~~~~~~~~~~~~~l~~~ 356 (910)
T TIGR00833 277 TGKAILGSALTVAVAFLALSLARLPSFKTLGVSCAVGVLVALLNAVTLTPALLTLEGREGLMKPGRKSKIRFIWRRLGTA 356 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccchHhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999943211 1
Q ss_pred cCCccchhhHHHHHHHHHHHHHHhhhcccccccccccCCCCchhhhHHHHHHHhhccC--CCEEEEEecC-CCCchhhhh
Q 007203 158 LGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVG--PPLYFVVKDY-NYSSESRHT 234 (613)
Q Consensus 158 l~~~~~k~~vl~~~~~l~~~si~g~~~l~~~~~~~~~~p~ds~~~~~~~~~~~~f~~~--~~~~iv~~~~-d~~~~~~~~ 234 (613)
+.+| ++.+++++++++++++++..+++.++|..+++|+|++.++.++.++++|+++ .|++++++.. +..++. .+
T Consensus 357 v~r~--p~~vl~v~~~ll~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~f~~~~~~p~~Vvv~~~~~~~~p~-~l 433 (910)
T TIGR00833 357 VVRR--PWPILVTTLIISGVSLLALPLIRTGYDDEKMIPTDLESVQGYEAADRHFPGNSMDPMVVMIKSDHDVRNPA-LL 433 (910)
T ss_pred HHhc--cHHHHHHHHHHHHHHHHHhcCCCcCCCcHhhcCCCCcHHHHHHHHHHhCCCccCCCeEEEEeCCCCCCCHH-HH
Confidence 1222 3345666777788899999999999999999999999999999999999866 7888888853 555442 12
Q ss_pred hhhhcccccCchhhHHHHHHhccCCCCcccc---CCCCc-----------------------------------------
Q 007203 235 NQLCSISQCDSNSLLNEISRASSIPELSYIA---KPAAS----------------------------------------- 270 (613)
Q Consensus 235 ~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~---~~~~~----------------------------------------- 270 (613)
+.+ +++.+.+ ++.|+...+. .|...
T Consensus 434 ~~l--------~~l~~~l---~~~~gV~~V~~~~~p~g~~~~~~~~~~q~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 502 (910)
T TIGR00833 434 ADI--------DRFEREI---KAVPGINMVQETQRPDGVVIKKTYLTFQAGNLGDQLDEFSDQLTSRQAYLLQDAEKIAE 502 (910)
T ss_pred HHH--------HHHHHHH---hcCCCcceeecCCCCCCCccchhhHHHHHhhHhhhHHhhhhhHHHHHhhHHHHHHHHHH
Confidence 211 1122222 2222211110 00000
Q ss_pred ---------------------------------------------hHHHHHhhcCCCcccccccccCCccCCCCCCCCCC
Q 007203 271 ---------------------------------------------WLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCC 305 (613)
Q Consensus 271 ---------------------------------------------wl~~f~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~ 305 (613)
|.+...+|...++ -|+++. .|.
T Consensus 503 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~--~~~ 569 (910)
T TIGR00833 503 AIAGLRLVQAGMRLDGENLGQVSLAVRLMQQAISKLQGSAGDVFDIFDPLRRFVAAIP-----------ECRANP--VCS 569 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-----------CcccCh--HHH
Confidence 0000011111000 000000 000
Q ss_pred CC-------CCCCCCC-------CCc-------cc---------CCCcccc--cCCCCCCCCChhHHHhhhHHHHhhC--
Q 007203 306 SP-------DEEPCGV-------NGV-------CK---------DCTTCFR--HSDLVNNRPSTEQFREKLPWFLNAL-- 351 (613)
Q Consensus 306 ~~-------~~~~~~~-------~~~-------~~---------~~~~~~~--~~~~~~~~p~~~~f~~~l~~~l~~~-- 351 (613)
-. |....+. ..+ .+ +-.+.++ ..++.++.+...+-.+.+..|.+..
T Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (910)
T TIGR00833 570 VAREIVQAADTVVSSAAKLADAAGQLARGIADVASALSQVSGLPNALDGIGTQLAQMRESAAGVQDLLNELSDYSMTMGK 649 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0000000 000 00 0000000 0000000000000000000110000
Q ss_pred ------------CCccccCCCCCcccccccccCCCCCeEEeeEEEEecccCCChhHHHHHHHHHHHHHHHhhhc---cCc
Q 007203 352 ------------PSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDT---LKI 416 (613)
Q Consensus 352 ------------p~~~~~~~~~~~y~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~ 416 (613)
|... -..+.|++..+..-.+++ +.+++.+..+.....++..+.++++|+..++..+. .+.
T Consensus 650 ~~~~~~~~~f~~p~~~---~~~~~f~~~~~~~~s~dg--~~~~~~v~~~~~p~~~~~~~~v~~lr~~~~~~~~~~~~~~~ 724 (910)
T TIGR00833 650 LKGNAMGVDFYAPPRI---FTDPNFKAVLDYFLSPDG--HAARLLVYGDGSPAGDQGAQEFNAIRTVAEEAIQRADLEPA 724 (910)
T ss_pred hhhhcccCCcccChHH---hCCHhHHHHHHHhcCCCC--CeEEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 0000 000111111110001112 23455555443223344557778877776654322 356
Q ss_pred ccccccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhccc-----chh-
Q 007203 417 NIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQ-----LNA- 490 (613)
Q Consensus 417 ~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l~i~~~~~~~~G~m~~~gi~-----ln~- 490 (613)
+++.+|.+....|....+.++......++++++++++++++||+...+.+++++.+++.+.+|+++|++.+ ++.
T Consensus 725 ~~~vtG~~~~~~d~~~~~~~d~~~~~~~~~~~i~liL~~~fRS~~~pl~~l~~v~ls~~~s~G~~~~~~~~~~g~~l~~~ 804 (910)
T TIGR00833 725 KVELAGVSAVNRDLRDLVNSDLGLISIITLAIVFMILALLLRAPVAPIVLIGSVALSYLWALGLSVLAFQHILGAELHWS 804 (910)
T ss_pred EEEEeChhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchh
Confidence 78889998888888888888888888999999999999999999999999999999999999999887654 333
Q ss_pred HHHHHHHHHhHhcccchhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Q 007203 491 VSVVNLIMSIGIAVEFCVHIVHAFLVSH-GNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLA 569 (613)
Q Consensus 491 ~s~~~~~i~iGl~VD~sih~~~~~~~~~-~~~~~a~~~al~~~g~~v~~~~~ltt~~gf~~L~fs~~~~~~~f~~~~~~~ 569 (613)
...+..++.+|+++||+||+++||+|+. ++.+++++++++++|++|+.++ +++++||..|.+++.+.++.+++.+. .
T Consensus 805 ~~~~~~~il~glgvDY~I~l~sR~ree~~~g~~~av~~a~~~tg~~I~~a~-~~~~~~f~~l~~s~~~~l~~~G~~~a-~ 882 (910)
T TIGR00833 805 VLAGVFVLLVALGVDYNMLLVSRIKEESPAGNRTGIIRALGSTGGVITAAG-LVFAGTMAALASAQLTAIAQFGFTVG-V 882 (910)
T ss_pred HHHHHHHHHHHhhhchHHHHHHHHHHHHhcCccHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHhcchHHHHHHHHHHH-H
Confidence 4456678889999999999999999985 3356899999999999999998 69999999999999999999855443 3
Q ss_pred HHHH-HHHHHHHHHHHHHHhhCCC
Q 007203 570 LVII-GFLHGLVFLPVILSLFGPP 592 (613)
Q Consensus 570 ~~~~-~l~~~l~~lP~ll~~~~~~ 592 (613)
++++ .++..++++|+++.++++.
T Consensus 883 gvl~~a~~v~~~l~Pall~l~g~~ 906 (910)
T TIGR00833 883 GILLDTFIVRSVTVPALTLLLGRW 906 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Confidence 4555 5777789999999999875
No 10
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Probab=100.00 E-value=1.5e-38 Score=373.33 Aligned_cols=501 Identities=17% Similarity=0.200 Sum_probs=326.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhheeeeeccccHhHHHHHHHhc-CCCCCHHHHHHHHHhhhhhHH
Q 007203 25 LLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSI 103 (613)
Q Consensus 25 ~l~~~~l~~~~~a~~~~~Gl~~~~g~~~~~~~~~~~p~l~l~igvd~~~~l~~~~~~~-~~~~~~~~~i~~~l~~~g~~i 103 (613)
...+..++++.++++|++|++.++|.++|. ++.+.+.+++|+|+||++|++++|+++ .++.+.++++.+++++.|+|+
T Consensus 294 ~~~l~~l~~i~~s~~~~~~~~~l~~~~ln~-~s~~~~~lliGi~vD~~I~~~~r~~e~~~~g~~~~~A~~~a~~~~~~~i 372 (862)
T TIGR03480 294 RLVFAVLVTLIVGLILTAAFATLAVGHLNL-ISVAFAVLFIGLGVDFAIQFSLRYREERFRGGNHREALSVAARRMGAAL 372 (862)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 345678889999999999999999999997 788889999999999999999999876 456788999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------------ccCCccchhh
Q 007203 104 TLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHAP-----------------ILGLWGVKMV 166 (613)
Q Consensus 104 ~~tslTt~~~F~~~~~s~ip~ir~Fgi~~aigv~~~~v~~lt~~pall~~~~~-----------------~l~~~~~k~~ 166 (613)
+++++||++||+++.++++|++|+||+.+++|++++++.+++++|+++....+ +..+| +..
T Consensus 373 ~~s~lTt~~gf~~l~~~~~~~~~~lg~~~~~gv~~s~l~~l~llP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 450 (862)
T TIGR03480 373 LLAALATAAGFFAFLPTDYKGVSELGIIAGTGMFIALFVTLTVLPALLRLLRPPRRRKPPGYATLAPLDAFLRRH--RRP 450 (862)
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCccchhHHHHHHHHHhc--cHH
Confidence 99999999999999999999999999999999999999999999999953211 11122 334
Q ss_pred HHHHHHHHHHHHHHhhhcccccccccccCCCCchhhhHHHHHHHhhccCC-CEEEEEecCCCCchhhhhhhhhcccccCc
Q 007203 167 VVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVGP-PLYFVVKDYNYSSESRHTNQLCSISQCDS 245 (613)
Q Consensus 167 vl~~~~~l~~~si~g~~~l~~~~~~~~~~p~ds~~~~~~~~~~~~f~~~~-~~~iv~~~~d~~~~~~~~~~~~~~~~~~~ 245 (613)
++++++++.++++++..+++.++|+.+++|++++..+.++.+.+.+..+. +..++.++ +++ .
T Consensus 451 v~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~vl~~~-----~~~-~----------- 513 (862)
T TIGR03480 451 VLGVTLILGIAALALLPQLRFDFNPLNLQDPKTESVRTFLELLADPDTSPYSAEVLAPS-----APE-A----------- 513 (862)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCchhccCCCchHHHHHHHHHhCcccCCCceEEecCC-----HHH-H-----------
Confidence 56677777888999999999999999999999999999998888775432 23333322 111 0
Q ss_pred hhhHHHHHHhccCCCCccccCCCCchHHHHH---------------hhcCCCcccccccccCCcc-CCCCCCCCCCCCCC
Q 007203 246 NSLLNEISRASSIPELSYIAKPAASWLDDFL---------------VWTSPEAFGCCRKFVNGTY-CPPDDQPPCCSPDE 309 (613)
Q Consensus 246 ~~l~~~i~~~~~~~~~~~~~~~~~~wl~~f~---------------~~~~~~~~~~~~~~~n~~~-~~~~~~~~~~~~~~ 309 (613)
.++.+++ ++.|+...+ ..+.+|. +-+++ ..+... .+....+. .....
T Consensus 514 ~~~~~~l---~~~~~V~~v-----~sl~~~v~~~q~~kl~~i~~~~~~l~~--------~~~~~~~~~~~~~~~-~~~~l 576 (862)
T TIGR03480 514 RALTERL---EALPEVDQV-----VTLPDFVPDDQEAKLALIADLALVLGP--------TLNPGEADPAPSAEE-VAAAL 576 (862)
T ss_pred HHHHHHH---hCCCCcceE-----eehhhcCCCCHHHHHHHHHHHHHHhCc--------ccCCccCCCCCChHH-HHHHH
Confidence 0122222 223332110 0111111 00000 000000 00000000 00000
Q ss_pred C----CCC---CCCcccCCCc------ccccCCCCCCCCChhHHHhhhH-HHHhhCCC------------ccccCCCCCc
Q 007203 310 E----PCG---VNGVCKDCTT------CFRHSDLVNNRPSTEQFREKLP-WFLNALPS------------ADCAKGGHGA 363 (613)
Q Consensus 310 ~----~~~---~~~~~~~~~~------~~~~~~~~~~~p~~~~f~~~l~-~~l~~~p~------------~~~~~~~~~~ 363 (613)
+ .++ .....++|.. .+ .++....+.+++-.+.+. .+....|+ ....++-.+.
T Consensus 577 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~l--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~lp~~ 654 (862)
T TIGR03480 577 RRLAARLRAAAAKSQDPDAAAAGRLAASL--DRLLAKAPAQAATLRALQGALLAGLPGELDRLRDSLQAEPVTLEDLPPD 654 (862)
T ss_pred HHHHHHHHHHhhccCCcchHHHHHHHHHH--HHHhhcccccHHHHHHHHHHHHHhHHHHHHHHHHHccCCCCChhhCCHH
Confidence 0 000 0000011100 00 000000111111000000 00000000 0000000000
Q ss_pred ccccccccCCCCCeEEeeEEEEecc-cCCChhHHHHHHHHHHHHHHHhhhccCcccccccceeeehhhHHHHHHHHHHHH
Q 007203 364 YSTSVDLNGYESGIIQASEFRTFHT-PLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINI 442 (613)
Q Consensus 364 y~~~~~~~~~~~~~i~~s~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~ 442 (613)
+.+. +.+ +++ ..++.+..+ +..+.++.. +..++.++. ....+|.+..+.+....+.++....+
T Consensus 655 ~~~~--~~~-~~~---~~~l~v~~~~~~~~~~~l~-------~~~~~v~~~---~~~~tG~~~~~~~~~~~i~~~~~~~~ 718 (862)
T TIGR03480 655 LRRR--WVA-KDG---RARLEVFPKEDLNDNEALR-------RFVRAVRKV---APDATGAPVSILESGDTVVGAFLQAF 718 (862)
T ss_pred HHHh--HcC-CCC---CEEEEEecCCCcchHHHHH-------HHHHHHHhh---CCCccChHHHHHHHHHHHHHHHHHHH
Confidence 1000 101 111 123333332 222222222 222222211 11246877777777778888888889
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHHHHHHHhcCCHH
Q 007203 443 AVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVSHGNRN 522 (613)
Q Consensus 443 ~~~~~~v~vv~~l~~~s~~~~~~~~l~i~~~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~~~~~~~~~~~~ 522 (613)
.++++++++++++.+||++.++++++|+++++++++|+|+++|+++|..+++++++.+|++|||+||+++||+++++...
T Consensus 719 ~~a~~~i~lll~~~frs~~~~l~~l~P~~l~~~~~~g~m~~~gi~l~~~~~~~~~l~lGigVDy~I~~~~r~~~~~~~~~ 798 (862)
T TIGR03480 719 IYALVAITVLLLLTLRRVRDVLLVLAPLLLAGLLTVAAMVLLGIPFNFANIIALPLLLGLGVDFGIYMVHRWRNGVDSGN 798 (862)
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHhhhhhhHHHHHHHHHHhccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988753211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007203 523 QRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVIL 586 (613)
Q Consensus 523 ~a~~~al~~~g~~v~~~~~ltt~~gf~~L~fs~~~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll 586 (613)
. ..+++|++|+.++ +||++||..|+||+.+..++++ .+...+++++++.+++++|+++
T Consensus 799 --~--~~~~~g~ai~~sa-ltt~~gf~~l~~s~~~~~~~~G-~~~~~gi~~~l~~~l~~lPall 856 (862)
T TIGR03480 799 --L--LQSSTARAVFFSA-LTTATAFGSLAVSSHPGTASMG-ILLSLGLGLTLLCTLIFLPALL 856 (862)
T ss_pred --H--HHhhhHHHHHHHH-HHHHHHHHHHHHhcCccHHHHH-HHHHHHHHHHHHHHHHHHHhhc
Confidence 1 1246899999998 6999999999999999999984 4555678899999999999987
No 11
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=100.00 E-value=1.8e-30 Score=301.08 Aligned_cols=345 Identities=15% Similarity=0.216 Sum_probs=251.9
Q ss_pred hhhHHHHHHHHHHHHHHhhhcccccccccccCCCCchhhhHHHHHHHhhc-cCCCEEEEEecCCCCchhhhhhhhhcccc
Q 007203 164 KMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLR-VGPPLYFVVKDYNYSSESRHTNQLCSISQ 242 (613)
Q Consensus 164 k~~vl~~~~~l~~~si~g~~~l~~~~~~~~~~p~ds~~~~~~~~~~~~f~-~~~~~~iv~~~~d~~~~~~~~~~~~~~~~ 242 (613)
|..++++++++++++.||+.+++.+.|+.+++|+|++.+++++.++++|+ +..++.+++++.|..+++ ..+++
T Consensus 4 ~~~v~~~~~~l~~~~~~g~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~fg~~~~~~~v~v~~~~~~~~~-~l~~i----- 77 (719)
T TIGR00921 4 RTAIILVFLALLILSAYGAQHLNVESDTEKQLPKDFESYKWYHVLQREFGTSTKTLLVVIEGDDVTRKP-VLDYM----- 77 (719)
T ss_pred chhhHHHHHHHHHHHHHhcccceeccChhhhCCCCCHHHHHHHHHHHHHCCCCeEEEEEEEeCCCCCHH-HHHHH-----
Confidence 44567788888899999999999999999999999999999999999997 445677888877766653 22211
Q ss_pred cCchhhHHHHHHhccCCCCccccCCCCchHHHHHhhcCCCcccccccccCCccCCCCCCCCCCCCCCCCCCCCCcccCCC
Q 007203 243 CDSNSLLNEISRASSIPELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVCKDCT 322 (613)
Q Consensus 243 ~~~~~l~~~i~~~~~~~~~~~~~~~~~~wl~~f~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (613)
+++.+++ ++.|+ +.+ ..++.++.+..+ +.+
T Consensus 78 ---~~l~~~l---~~~~~---V~~--v~s~~~~~~~~~------------~~~--------------------------- 107 (719)
T TIGR00921 78 ---RRLEQRL---REKPY---VTN--VRSAADIMRQIP------------GNF--------------------------- 107 (719)
T ss_pred ---HHHHHHH---hcCCC---cce--eecHHHHHHHhc------------CCC---------------------------
Confidence 1233322 33332 111 223444432111 100
Q ss_pred cccccCCCCCCCCC-hhHHHhhhHHHHhhCCCccccCCCCCcccccccccCCCCCeEEeeEEEEecccCCChhHHHHHHH
Q 007203 323 TCFRHSDLVNNRPS-TEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLR 401 (613)
Q Consensus 323 ~~~~~~~~~~~~p~-~~~f~~~l~~~l~~~p~~~~~~~~~~~y~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~i~ 401 (613)
..|+ .++..+ ..+..|+.. .+.++-++ +.+++.+..++..+.++..+.++
T Consensus 108 ----------~~p~~~~~~~~----~~~~~~~~~---------~~~~s~d~------~~~~i~v~~~~~~~~~~~~~~~~ 158 (719)
T TIGR00921 108 ----------PLPVTMPEVRP----LMSEYPRSK---------EMFLSKDH------TVAIIIVQLKSDADYKQVVPIYN 158 (719)
T ss_pred ----------cCCCCHHHHHH----HHHhCcHHH---------HhccCCCC------ceEEEEEEecCCCChHHHHHHHH
Confidence 0122 122221 112112100 00011111 12344444444333444455667
Q ss_pred HHHHHHHHhhhccCcccccccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHH
Q 007203 402 AAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVM 481 (613)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l~i~~~~~~~~G~m 481 (613)
++|+..++...+.|++++.+|.+....+..+.+.++......++++++++++++++||++.++++++++.+++++++|+|
T Consensus 159 ~i~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~~~~rs~~~~~~~l~~~~~~~~~~~g~~ 238 (719)
T TIGR00921 159 DVERSLERTNPPSGKFLDVTGSPAINYDIEREFGKDMGTTMAISGILVVLVLLLDFKRWWRPLLPLVIILFGVAWVLGIM 238 (719)
T ss_pred HHHHHHhccCCCCCcEEEecCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777776543346788889988777777777888888888999999999999999999999999999999999999999
Q ss_pred HHhcccchhHHHHHHHHHhHhcccchhHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Q 007203 482 AILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVSH---GNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEI 558 (613)
Q Consensus 482 ~~~gi~ln~~s~~~~~i~iGl~VD~sih~~~~~~~~~---~~~~~a~~~al~~~g~~v~~~~~ltt~~gf~~L~fs~~~~ 558 (613)
+++|+++|..+++..++.+|++|||+||+.+||+++. .++++|++++++++|+|++.++ +||++||++|.+++.++
T Consensus 239 ~~~g~~l~~~~~~~~~l~lgi~vd~~ihl~~r~~~~~~~g~~~~~ai~~a~~~~g~~i~~t~-~t~~~gf~~l~~s~~~~ 317 (719)
T TIGR00921 239 GWLGIPLYATTLLAVPMLIGVGIDYGIQTLNRYEEERDIGRAKGEAIVTAVRRTGRAVLIAL-LTTSAGFAALALSEFPM 317 (719)
T ss_pred HHhCCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhccHHHHHHH-HHHHHHHHHHHhccChH
Confidence 9999999999999999999999999999999998863 4789999999999999999998 69999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcc
Q 007203 559 FVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPSRH 595 (613)
Q Consensus 559 ~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~~~~~~~ 595 (613)
+++|+ .....+++++++.+++++|+++.++++.+++
T Consensus 318 ~~~~g-~~~~~gv~~~~l~~l~~lPall~~~~~~~~~ 353 (719)
T TIGR00921 318 VSEFG-LGLVAGLITAYLLTLLVLPALLQSIDIGREK 353 (719)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 99985 3445568899999999999999988765443
No 12
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=99.98 E-value=1.5e-30 Score=290.43 Aligned_cols=344 Identities=17% Similarity=0.205 Sum_probs=249.3
Q ss_pred hhhHHHHHHHHHHHHHHhhhcccccccccccCCCCchhhhHHHHHHHhhc-cCCCEEEEEecCCCCchhhhhhhhhcccc
Q 007203 164 KMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLR-VGPPLYFVVKDYNYSSESRHTNQLCSISQ 242 (613)
Q Consensus 164 k~~vl~~~~~l~~~si~g~~~l~~~~~~~~~~p~ds~~~~~~~~~~~~f~-~~~~~~iv~~~~d~~~~~~~~~~~~~~~~ 242 (613)
|..++++++++.+++.+|+.+++.+.+..+++|+|++..+.++.+++.|+ +...+.+++++.|..+++ ..+.+
T Consensus 13 r~~i~~~~~~l~i~~~~~a~~l~~~s~~~~~~~~d~~~~k~y~~~~~~f~~~~~~i~v~ie~~dv~~~e-~~~~~----- 86 (727)
T COG1033 13 RKSIILIFLLLTILSAFGAQNLEFDSGTETFLPKDNEEYKNYDRLYKEFGSGTSLIVVVIEGDDVFSPE-VLEAL----- 86 (727)
T ss_pred ccHHHHHHHHHHHHHHHhhheeeecCCccccCCCchHHHHHHHHHHHhhCCCCceEEEEEeCCCCCCHH-HHHHH-----
Confidence 44567788888999999999999999999999999999999999999996 545677888887866653 23321
Q ss_pred cCchhhHHHHHHhccCCCCccccCCCCchHHHHHhhcCCCcccccccccCCccCCCCCCCCCCCCCCCCCCCCCcccCCC
Q 007203 243 CDSNSLLNEISRASSIPELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVCKDCT 322 (613)
Q Consensus 243 ~~~~~l~~~i~~~~~~~~~~~~~~~~~~wl~~f~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (613)
+++.+++ ++.|+. . ++.+|.+...+. + +
T Consensus 87 ---~~l~~~l---~~i~gV---~-~v~Spa~~~~~~-------------~--~--------------------------- 114 (727)
T COG1033 87 ---DSLEERL---EEIPGV---S-SVFSPADLLRQV-------------G--Y--------------------------- 114 (727)
T ss_pred ---HHHHHHH---hcCCCc---e-eccCHHHHhhhc-------------c--C---------------------------
Confidence 1233333 334432 2 233555543221 1 0
Q ss_pred cccccCCCCCCCCChhH-HHhhhHHHHhhCCCccccCCCCCcccccccccCCCCCeEEeeEEEEecccCCChhHHHHHHH
Q 007203 323 TCFRHSDLVNNRPSTEQ-FREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLR 401 (613)
Q Consensus 323 ~~~~~~~~~~~~p~~~~-f~~~l~~~l~~~p~~~~~~~~~~~y~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~i~ 401 (613)
...|+.++ -.+..+..-.-.|++ .+ ..+.+..++..+.....+..+
T Consensus 115 ---------g~iP~~~~~i~~~~~~~~~l~~d~--------~~----------------~~i~i~~~~~~~~~~~~~i~~ 161 (727)
T COG1033 115 ---------GRIPDSDSKISEVIESNSLLSPDN--------TH----------------TLIIIKLESDKNDAQKEEIYE 161 (727)
T ss_pred ---------CCCCCchhhhHHHHhhhcccCCcc--------cc----------------eEEEEecCcchhhHHHHHHHH
Confidence 00122111 000000000000110 00 111122222222233344455
Q ss_pred HHHHHHHHhhhccCcccccccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHH
Q 007203 402 AAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVM 481 (613)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l~i~~~~~~~~G~m 481 (613)
++++..+..+...+.+.+.+|.+..-++..+.+.+++.....++.+++.+++++.||+++.+++|++++.++++|++|+|
T Consensus 162 ~~~~~~e~~~~~~~~~~~ltG~~~~~~~i~~~~~~d~~~l~~l~~~l~vivL~~~fr~~~~~llpL~~~l~sv~~tlG~m 241 (727)
T COG1033 162 EIERIIEIAKFPSGVKLYLTGDPAIRYQILREIQKDMVVLLALAVILMVIVLYYVFRSVRRALLPLIIVLVSVLWTLGAM 241 (727)
T ss_pred hhhhhhhhhcCCCCCeEEEeCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 55555444333357888999998766667777888888888999999999999999999999999999999999999999
Q ss_pred HHhcccchhHHHHHHHHHhHhcccchhHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Q 007203 482 AILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVSH---GNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEI 558 (613)
Q Consensus 482 ~~~gi~ln~~s~~~~~i~iGl~VD~sih~~~~~~~~~---~~~~~a~~~al~~~g~~v~~~~~ltt~~gf~~L~fs~~~~ 558 (613)
+|+|+++++.|+...++.+|+|+||++|+.+||.++. ++.++|+++|++++|+|++.++ +||++||+.|+++..++
T Consensus 242 ~llG~plt~~s~~~~~llIgiGidy~vh~~nr~~ee~~~~~~~~eAv~~ai~~~g~avl~a~-lTT~~GF~Sl~~s~i~~ 320 (727)
T COG1033 242 GLLGIPLTITTSAVPPLLIGIGIDYGVHFHNRYEEERRKGRTVEEAVVEAIKHTGPAVLIAA-LTTAAGFLSLLTSSIPA 320 (727)
T ss_pred HHhCCCchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccHHHHHH-HHHHHHHHHHHHcccHH
Confidence 9999999999999999999999999999999999874 4789999999999999999998 79999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCccccccc
Q 007203 559 FVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPSRHIIIEK 600 (613)
Q Consensus 559 ~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~~~~~~~~~~~~ 600 (613)
+++|+ .....+++.+++.+++++|+++.+.+..+++++.+|
T Consensus 321 i~~~G-i~~siGi~la~l~sl~~lp~ll~~~~~~~~~~~~~k 361 (727)
T COG1033 321 IKEFG-ILLSIGIILAFLSSLTVLPALLILIPKGRKKREEKK 361 (727)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhchHhhhhhhhcc
Confidence 99984 445567899999999999998877776655444444
No 13
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=99.96 E-value=3.8e-26 Score=272.07 Aligned_cols=544 Identities=14% Similarity=0.116 Sum_probs=320.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhheeeeeccccHhHHHHHHHhc--CCCCCHHHHHHHHHhhhhhHHH
Q 007203 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ--PMELVLETRISNALVEVGPSIT 104 (613)
Q Consensus 27 ~~~~l~~~~~a~~~~~Gl~~~~g~~~~~~~~~~~p~l~l~igvd~~~~l~~~~~~~--~~~~~~~~~i~~~l~~~g~~i~ 104 (613)
++...+++.++++.+++++.++|+++|. ++.+...+.+|+.+||+++++++++++ .++.++.+++.++.++.++|++
T Consensus 365 ~li~~~~iP~s~~~~~~~~~~~g~~ln~-~sl~gli~~iGi~VD~aIvv~e~i~~~~~~~g~~~~~A~~~~~~~~~~~i~ 443 (1044)
T TIGR00915 365 TLIPTIAVPVVLLGTFAVLAAFGFSINT-LTMFAMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALV 443 (1044)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHhhheecceEEEehHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 5677788899999999999999999997 666667777888999999999988764 3577899999999999999999
Q ss_pred HHHHHHHHHHHhhcccC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------c---cc-------
Q 007203 105 LASLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIEVHA-------------P---IL------- 158 (613)
Q Consensus 105 ~tslTt~~~F~~~~~s~---ip~ir~Fgi~~aigv~~~~v~~lt~~pall~~~~-------------~---~l------- 158 (613)
.|++||+++|+-+.+.+ -+.++.|++..+.|++++++.++++.|++..... . +.
T Consensus 444 ~ttltti~~flPl~~~~G~~g~~~~~~~~~i~~~l~~S~l~al~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 523 (1044)
T TIGR00915 444 GIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIEKGEHHEFKGGFFGWFNRMFDRS 523 (1044)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccchHHHHHHHHHHHH
Confidence 99999999999988764 4678999999999999999999999998763210 0 00
Q ss_pred CCc---------cchhhHHHHHHHHHHHHHHhhhcccccccccc---------cCCCCchhhhHHHH---HHHhhccCC-
Q 007203 159 GLW---------GVKMVVVSVFLAFTVASIALSTRIEAGLEQQI---------VLPRDSYLQGYFDN---TTEYLRVGP- 216 (613)
Q Consensus 159 ~~~---------~~k~~vl~~~~~l~~~si~g~~~l~~~~~~~~---------~~p~ds~~~~~~~~---~~~~f~~~~- 216 (613)
.+. .+|..++++++++++.+++...+++.++=|.. .+|+++++.+..+. ++++.....
T Consensus 524 ~~~y~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~f~P~~d~~~~~v~v~~p~gtsl~~t~~~~~~ve~~l~~~~~ 603 (1044)
T TIGR00915 524 THGYENGVGKILKRRGRYLLVYVLLVGGMVWLFVRLPTSFLPDEDQGVFMTIVQLPAGATAERTQKVLAQVEKYLLAKEK 603 (1044)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhCCCCcCCccCCceEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 000 02334555556666777777766766654432 57888887666543 445443221
Q ss_pred -CEEEEEe--cCCCCchhhhhhhh-hcc-c-------ccCchhhHHHHHH-hccCCCCcc--cc-----C--C-------
Q 007203 217 -PLYFVVK--DYNYSSESRHTNQL-CSI-S-------QCDSNSLLNEISR-ASSIPELSY--IA-----K--P------- 267 (613)
Q Consensus 217 -~~~iv~~--~~d~~~~~~~~~~~-~~~-~-------~~~~~~l~~~i~~-~~~~~~~~~--~~-----~--~------- 267 (613)
.+.-+.. +.+......+..++ -.. + ..+.+++.+++++ ++++|+... .. + .
T Consensus 604 ~~v~~~~~~~G~~~~~~~~~~~~~~v~l~~~~~r~~~~~~~~~i~~~~~~~l~~~p~~~~~~~~~~~~~~~g~~~~i~i~ 683 (1044)
T TIGR00915 604 ANVESVFTVNGFSFAGRGQNSGMAFIRLKDWEERTGKENSVFAIAGRATGHFSQIKDAMVIAFNPPAILELGNATGFDFF 683 (1044)
T ss_pred CCeeEEEEEecccCCCCCcceEEEEEEecCHHhCCCccCCHHHHHHHHHHHHhcCCCceeeeecCCCCCCCCCCCCEEEE
Confidence 1221111 11100000000000 000 0 0011233333332 233333210 00 0 0
Q ss_pred -------C----CchHHHHHhhcCCCcccccccccCCccCCCCCCCCCC-CCCCCCCCCCCcccCCCcccccCCCCCCCC
Q 007203 268 -------A----ASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCC-SPDEEPCGVNGVCKDCTTCFRHSDLVNNRP 335 (613)
Q Consensus 268 -------~----~~wl~~f~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 335 (613)
. ..+-++..+.+++.+. .. ..+.++ .++++.+. .+|.+....+++
T Consensus 684 l~g~~G~d~~~L~~~a~~l~~~l~~~pg--~~-~v~~~~--~~~~~~~~i~~d~~k~~~~Gl------------------ 740 (1044)
T TIGR00915 684 LQDRAGLGHEALMQARNQLLGLAAQNPA--LT-RVRPNG--LEDEPQFKLNIDDEKAQALGV------------------ 740 (1044)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHhcCCC--eE-Eeeccc--cCCCceEEEEECHHHHHHcCC------------------
Confidence 0 0011111111111100 00 000000 01111110 011111111111
Q ss_pred ChhHHHhhhHHHHhhCCCccc------------------------------cCCCCCcccccc-ccc-CCCCCeEEe---
Q 007203 336 STEQFREKLPWFLNALPSADC------------------------------AKGGHGAYSTSV-DLN-GYESGIIQA--- 380 (613)
Q Consensus 336 ~~~~f~~~l~~~l~~~p~~~~------------------------------~~~~~~~y~~~~-~~~-~~~~~~i~~--- 380 (613)
+.++..+.++..++..+-.+- ..+++.-.-+++ +++ +.....|..
T Consensus 741 s~~~v~~~l~~~~~g~~~~~~~~~~~~~~v~v~~~~~~~~~~~~l~~l~i~~~~g~~vpL~~va~v~~~~~~~~i~r~n~ 820 (1044)
T TIGR00915 741 SIADINTTLSTAWGSSYVNDFIDRGRVKRVYVQAEPDARMSPEDINKWYVRNASGEMVPFSAFATGRWEYGSPKLERYNG 820 (1044)
T ss_pred CHHHHHHHHHHHhCCceeEEEEeCCEEEEEEEEeChhHcCCHHHHhceEeECCCCCEEEhhheEEEEEccCccceeecCC
Confidence 011122222111110000000 000000000000 000 000000100
Q ss_pred eE-EEEecccCCChhHHHHHHHHHHHHHHHhhhccCcccccccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 007203 381 SE-FRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSS 459 (613)
Q Consensus 381 s~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~v~vv~~l~~~s 459 (613)
.| +.+.- +..+..+..+..++++++.++++ .|+++...|. .++......+....+.++++++++++.+.|+|
T Consensus 821 ~~~i~v~~-~~~~~~~~~~~~~~i~~~~~~lP--~g~~~~~~G~----~~~~~~~~~~~~~~~~~al~li~lvl~~~F~S 893 (1044)
T TIGR00915 821 LPSMEILG-SAAPGVSTGEAMAAMEAIAQKLP--PGFGFSWTGM----SYEERLSGSQAPALYALSLLVVFLCLAALYES 893 (1044)
T ss_pred ceEEEEEE-EcCCCCCHHHHHHHHHHHHHhCC--CCceEeeccH----HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 00 11111 11111234455556666655554 2555443443 22333334556667788999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHHHHHHHh--c-CCHHHHHHHHHHHHHHHH
Q 007203 460 LWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVS--H-GNRNQRSQKALSTMGASV 536 (613)
Q Consensus 460 ~~~~~~~~l~i~~~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~~~~~~~--~-~~~~~a~~~al~~~g~~v 536 (613)
++.+++++++++++.++++..++++|.++|..+++.+++.+|+.||++|++++++.+. + .++++|+.+|.++..+|+
T Consensus 894 ~~~pliI~~~iPlsl~G~~~~l~~~g~~l~~~sl~G~i~l~GivVnnaIvlvd~~~~~~~~G~~~~~Ai~~a~~~RlRPI 973 (1044)
T TIGR00915 894 WSIPVSVMLVVPLGIIGALLATSLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAKELMAQGKSIVEAALEAARMRLRPI 973 (1044)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHHHHHHcceEeeHHHHHHHHHcCCCHHHHHHHHHHhhhchH
Confidence 9999999999999999999999999999999999999999999999999999877653 2 478999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccccccCCC
Q 007203 537 FSGITLTKLVGVIVLCFARS---EIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPSRHIIIEKQQADEPS 607 (613)
Q Consensus 537 ~~~~~ltt~~gf~~L~fs~~---~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~~~~~~~~~~~~~~~~~~~ 607 (613)
++++ +||++||+||+++.. ++.+.+. ...++++++|.+.+|+++|+++.++.+..++++.+| |||
T Consensus 974 lmTt-ltti~gllPla~~~g~g~~~~~pla-i~vigGL~~st~ltL~vvP~ly~~~~~~~~~~~~~~----~~~ 1041 (1044)
T TIGR00915 974 LMTS-LAFILGVVPLAISTGAGSGSQHAIG-TGVFGGMVTATVLAIFFVPLFYVVVRRLFKRKSTKK----EPS 1041 (1044)
T ss_pred HHHH-HHHHHHHHHHHHhcCCChHHhCccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCC----CCC
Confidence 9998 799999999999854 3444442 233456888999999999999999877655544444 565
No 14
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=99.96 E-value=7e-26 Score=269.60 Aligned_cols=533 Identities=13% Similarity=0.092 Sum_probs=318.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhheeeeeccccHhHHHHHHHhc-CCCCCHHHHHHHHHhhhhhHHH
Q 007203 26 LGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSIT 104 (613)
Q Consensus 26 l~~~~l~~~~~a~~~~~Gl~~~~g~~~~~~~~~~~p~l~l~igvd~~~~l~~~~~~~-~~~~~~~~~i~~~l~~~g~~i~ 104 (613)
.++...+++.++++++++++.++|.++|. ++...+.+.+|+.+||++|++++++++ .++.++.+++.++.++.+.|++
T Consensus 358 ~~li~~~~ip~s~~~~~~~l~~~g~~ln~-~sl~gl~~~iGi~Vd~aIvv~e~i~~~~~~g~~~~~A~~~~~~~~~~~i~ 436 (1025)
T PRK10614 358 ATLIPAVAVPVSLIGTFAAMYLCGFSLNN-LSLMALTIATGFVVDDAIVVLENISRHLEAGMKPLQAALQGVREVGFTVL 436 (1025)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHhheeecCcEEEEeHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 36677789999999999999999999997 677777778899999999999777654 4577899999999999999999
Q ss_pred HHHHHHHHHHHhhcccCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------------c----------
Q 007203 105 LASLSEFLAFAVGSFIPM---PACRVFSMFAALAVLLDFFLQVTAFVALIEVHA---------------P---------- 156 (613)
Q Consensus 105 ~tslTt~~~F~~~~~s~i---p~ir~Fgi~~aigv~~~~v~~lt~~pall~~~~---------------~---------- 156 (613)
.|++||+++|+.+.+.+- ..++.|++..++|++++++.++++.|++..++. .
T Consensus 437 ~stltti~~f~Pl~~~~g~~g~~~~~~~~~~~~~l~~S~~~al~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Y~ 516 (1025)
T PRK10614 437 SMSLSLVAVFLPLLLMGGLPGRLFREFAVTLSVAIGISLLVSLTLTPMMCAWLLKSSKPREQKRLRGFGRMLVALQQGYG 516 (1025)
T ss_pred HHHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhhHHHHHHHHHHHHH
Confidence 999999999999988765 479999999999999999999999998874320 0
Q ss_pred ----ccCCccchhhHHHHHHHHHHHHHHhhhcccccccccc---------cCCCCchhhhHHHHHH---HhhccCCCEEE
Q 007203 157 ----ILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQI---------VLPRDSYLQGYFDNTT---EYLRVGPPLYF 220 (613)
Q Consensus 157 ----~l~~~~~k~~vl~~~~~l~~~si~g~~~l~~~~~~~~---------~~p~ds~~~~~~~~~~---~~f~~~~~~~i 220 (613)
++.+ +|+.++++++++++++++...+++.++-|.. ..|+++++.+..+..+ +.....+.+.-
T Consensus 517 ~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~~l~~~f~P~~d~~~~~v~v~~~~gtsl~~t~~~~~~~~~~l~~~~~V~~ 594 (1025)
T PRK10614 517 RSLKWVLN--HTRWVGVVLLGTIALNVWLYISIPKTFFPEQDTGRLMGFIQADQSISFQAMRGKLQDFMKIIRDDPAVDN 594 (1025)
T ss_pred HHHHHHHh--chHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEEECCCCCCHHHHHHHHHHHHHHHhcCCCeEE
Confidence 0111 2344566666777788887777776665532 3577887766655444 33332222322
Q ss_pred EEe-cCCCC-chhhhhhhhhccccc--CchhhHHHHHH-hccCCCCccc---------cC-------------CCC----
Q 007203 221 VVK-DYNYS-SESRHTNQLCSISQC--DSNSLLNEISR-ASSIPELSYI---------AK-------------PAA---- 269 (613)
Q Consensus 221 v~~-~~d~~-~~~~~~~~~~~~~~~--~~~~l~~~i~~-~~~~~~~~~~---------~~-------------~~~---- 269 (613)
+.. .+... +..+..-.+...... +.+++.+++++ +.++|+.... .+ +..
T Consensus 595 v~~~~g~~~~~~~~~~v~l~~~~~r~~~~~~i~~~lr~~l~~~pg~~~~~~~~~~~~~~g~~~~~~i~i~l~G~d~~~L~ 674 (1025)
T PRK10614 595 VTGFTGGSRVNSGMMFITLKPLSERSETAQQVIDRLRVKLAKEPGANLFLMAVQDIRVGGRQSNASYQYTLLSDDLAALR 674 (1025)
T ss_pred EEEEecCCCCceeEEEEEecchhhccCcHHHHHHHHHHHHhcCCCcEEEecCCcccCcCCCCCCCCEEEEEECCCHHHHH
Confidence 211 00000 000000000000000 01234444432 2233332110 00 000
Q ss_pred chHHHHHhhcCCCcccccccccCCccCCCCCCCCC-CCCCCCCCCCCCcccCCCcccccCCCCCCCCChhHHHhhhHHHH
Q 007203 270 SWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPC-CSPDEEPCGVNGVCKDCTTCFRHSDLVNNRPSTEQFREKLPWFL 348 (613)
Q Consensus 270 ~wl~~f~~~~~~~~~~~~~~~~n~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~~~l~~~l 348 (613)
.+-++..+.+++.+- .. ..+.++ .+.++.+ ..+|.+....+++ +.++..+.++..+
T Consensus 675 ~~a~~i~~~L~~~pg--v~-~v~~~~--~~~~~el~i~id~~ka~~~Gl------------------s~~~v~~~l~~~~ 731 (1025)
T PRK10614 675 EWEPKIRKALAALPE--LA-DVNSDQ--QDKGAEMALTYDRDTMARLGI------------------DVQAANSLLNNAF 731 (1025)
T ss_pred HHHHHHHHHHhcCCC--eE-EeecCC--CCCCceEEEEECHHHHHHcCC------------------CHHHHHHHHHHHh
Confidence 111111112211100 00 000000 0011100 0011111000000 1122222222221
Q ss_pred hhCCCccccC------------------------------CCC-Cccccccccc-CCCCCeEEe---eEE-EEecccCCC
Q 007203 349 NALPSADCAK------------------------------GGH-GAYSTSVDLN-GYESGIIQA---SEF-RTFHTPLNK 392 (613)
Q Consensus 349 ~~~p~~~~~~------------------------------~~~-~~y~~~~~~~-~~~~~~i~~---s~~-~~~~~~~~~ 392 (613)
...+-..-.. +|+ -+..+-.+++ ......|.. .|. .+. -+..+
T Consensus 732 ~G~~~~~~~~~~~~~~i~v~~~~~~~~~~~~L~~l~i~~~~G~~vpL~~vA~i~~~~~p~~I~r~n~~~~i~v~-a~~~~ 810 (1025)
T PRK10614 732 GQRQISTIYQPLNQYKVVMEVDPRYTQDISALEKMFVINNEGKAIPLSYFAKWQPANAPLSVNHQGLSAASTIS-FNLPT 810 (1025)
T ss_pred CCceeeEEecCCeEEEEEEEeChhHcCCHHHHhceEEECCCCCEEEhhHeEEEEEcCCcccEEecCCeeEEEEE-EEeCC
Confidence 1110000000 000 0000000000 000000110 010 111 11111
Q ss_pred hhHHHHHHHHHHHHHHHhhhccCcccccccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHH
Q 007203 393 QGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVM 472 (613)
Q Consensus 393 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l~i~~ 472 (613)
..+..+..+++++..++..-+.|++....|. .++..+...++...++++++++++++.+.|+|++.++++++++++
T Consensus 811 g~~~~~~~~~i~~~l~~~~lP~g~~~~~~G~----~~~~~~~~~~l~~~~~~al~li~liL~~~F~S~~~pliI~~tIPl 886 (1025)
T PRK10614 811 GKSLSDASAAIERAMTQLGVPSTVRGSFAGT----AQVFQETMNSQLILILAAIATVYIVLGILYESYVHPLTILSTLPS 886 (1025)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeEEEeccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 1234555666666665532112444333332 233445556778888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHHHHHHHh--c--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007203 473 IVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVS--H--GNRNQRSQKALSTMGASVFSGITLTKLVGV 548 (613)
Q Consensus 473 ~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~~~~~~~--~--~~~~~a~~~al~~~g~~v~~~~~ltt~~gf 548 (613)
++++.+..++++|.++|..+++.+++.+|+.|+++|.+++.+.+. + .++++|+.+|-++..+||++++ +||++|+
T Consensus 887 al~G~~~~L~l~g~~l~~~s~iG~i~L~GIvvnNaIllvd~~~~~~~~~g~~~~~Aii~A~~~RlRPIlmTt-lTti~Gl 965 (1025)
T PRK10614 887 AGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRNGNLTAQEAIFQACLLRFRPIMMTT-LAALFGA 965 (1025)
T ss_pred HHHHHHHHHHHHCCCccHHHHHHHHHHHHHHHcCeEEehHHHHHHHHhcCCCHHHHHHHHHHhhhhHHHHHH-HHHHHHH
Confidence 999999999999999999999999999999999999999776542 2 3789999999999999999998 7999999
Q ss_pred HHHhhccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 007203 549 IVLCFARS---EIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGP 591 (613)
Q Consensus 549 ~~L~fs~~---~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~~~ 591 (613)
+||+++.. ++.+.+. ..+++++++|.+.+|+++|+++.++.+
T Consensus 966 lPlal~~g~g~~~~~pmA-i~iigGL~~sT~ltL~vvP~lY~~~~~ 1010 (1025)
T PRK10614 966 LPLVLSGGDGAELRQPLG-ITIVGGLVMSQLLTLYTTPVVYLFFDR 1010 (1025)
T ss_pred HHHHHhcCCCHHHhCCch-hhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999754 3444432 233456888999999999999999954
No 15
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=99.95 E-value=1.5e-25 Score=267.85 Aligned_cols=540 Identities=15% Similarity=0.099 Sum_probs=310.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhheeeeeccccHhHHHHHHHhcC-C-----C-----CCHHHHHHHH
Q 007203 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP-M-----E-----LVLETRISNA 95 (613)
Q Consensus 27 ~~~~l~~~~~a~~~~~Gl~~~~g~~~~~~~~~~~p~l~l~igvd~~~~l~~~~~~~~-~-----~-----~~~~~~i~~~ 95 (613)
+++..+++.+|++.++.++.++|+++|. ++.. .+++|+-+||+++++++.+++. + + .++.+++.++
T Consensus 368 ~liv~~~iP~s~~~~~~~m~~~g~sln~-~sl~--~l~iGilVDdaIVvvE~i~r~~~~~~~~~g~~~~~~~~~~A~~~g 444 (1051)
T TIGR00914 368 ALIAATVIPLSLLITFIGMVFQGISANL-MSLG--ALDFGLIVDGAVVIVENAHRRLAEAQHHHGRQLTLKERLHEVFAA 444 (1051)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHH-HHHH--HHHHHhhhcCcEEeehHHHHHHHhcccccccccccccHHHHHHHH
Confidence 5677788899999999999999999997 4443 3556999999999987754321 1 2 4678899999
Q ss_pred HhhhhhHHHHHHHHHHHHHHhhcccCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------------
Q 007203 96 LVEVGPSITLASLSEFLAFAVGSFIPM---PACRVFSMFAALAVLLDFFLQVTAFVALIEVH------------------ 154 (613)
Q Consensus 96 l~~~g~~i~~tslTt~~~F~~~~~s~i---p~ir~Fgi~~aigv~~~~v~~lt~~pall~~~------------------ 154 (613)
.++.+.|++.|++||+++|+-+.+.+- ..++.|++..+++++++++.++++.|++...+
T Consensus 445 ~~~~~~pil~stlTti~~flPl~~~~g~~g~~~~~~~~~v~~~l~~Sll~al~~~P~l~~~~~~~~~~~~~~~~~~~~~~ 524 (1051)
T TIGR00914 445 SREVRRPLIFGQLIITLVFLPIFTLTGVEGKMFHPMAFTVVLALAGAMILSLTFVPAAVALFIRGKVAEKENRLMRVLKR 524 (1051)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccChHHHHHHH
Confidence 999999999999999999999876542 57899999999999999999999999887432
Q ss_pred --cccc---CCccchhhHHHHHHHHHHHHHHhhhcccccccccc---------cCCCCchhhhHH---HHHHHhhccCCC
Q 007203 155 --APIL---GLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQI---------VLPRDSYLQGYF---DNTTEYLRVGPP 217 (613)
Q Consensus 155 --~~~l---~~~~~k~~vl~~~~~l~~~si~g~~~l~~~~~~~~---------~~p~ds~~~~~~---~~~~~~f~~~~~ 217 (613)
.+++ .+ +|+.+++++++++++++++..+++.++-|.. ..|+++...+.. +.+++.....+.
T Consensus 525 ~Y~~~l~~~l~--~~~~~i~~~~~ll~~~~~~~~~l~~~f~P~~d~~~~~v~~~~~~Gts~e~t~~~~~~vE~~l~~~~~ 602 (1051)
T TIGR00914 525 RYEPLLERVLA--WPAVVLGAAAVSIVLVVWIASRVGGEFIPSLNEGDLAYQALRIPGTSLAQSVAMQQTLEKLIKSFPE 602 (1051)
T ss_pred HHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHhcCcCcCCCCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCC
Confidence 1111 12 2445666777777888888877777665521 246677665543 344555432222
Q ss_pred EEEEEe--cC-CCC-chh-hhhhhh-hccc---c-----cCchhhHHHHHH-hccCCCCcccc-----------------
Q 007203 218 LYFVVK--DY-NYS-SES-RHTNQL-CSIS---Q-----CDSNSLLNEISR-ASSIPELSYIA----------------- 265 (613)
Q Consensus 218 ~~iv~~--~~-d~~-~~~-~~~~~~-~~~~---~-----~~~~~l~~~i~~-~~~~~~~~~~~----------------- 265 (613)
+.-+.. +. +.. +.. ....++ -... . .+.+++.+++++ +.++|+..+..
T Consensus 603 v~~~~s~~g~~~~~~~~~~~~~a~i~v~l~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~~~~~~~~~g~~~ 682 (1051)
T TIGR00914 603 VARVFAKTGTAEIATDPMPPNASDTYIILKPESQWPEGKKTKEDLIEEIQEATVRIPGNNYEFTQPIQMRFNELISGVRS 682 (1051)
T ss_pred eEEEEEeecCCccCCCCCCCcceEEEEEEeccccccccCCCHHHHHHHHHHHHhhCCCcceecccChhhhHHhhccCCCC
Confidence 211110 10 000 000 000000 0000 0 011223333332 22333321100
Q ss_pred -------CCCC----chHHHHHhhcCCCcccccccccCCccCCCCCCCCCC-CCCCCCCCCCCcccCCCcccccCCCCCC
Q 007203 266 -------KPAA----SWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCC-SPDEEPCGVNGVCKDCTTCFRHSDLVNN 333 (613)
Q Consensus 266 -------~~~~----~wl~~f~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (613)
++.. .+-++.++.+++.+- .. ..+.+. ...++.+. ..|.+.+..+++.
T Consensus 683 ~i~i~l~G~d~~~L~~~a~~v~~~l~~~pg--v~-~v~~~~--~~~~~e~~i~id~~~~~~~Glt--------------- 742 (1051)
T TIGR00914 683 DVAVKVFGDDLDDLDATAEKISAVLKGVPG--AA-DVKVEQ--TTGLPYLTVEIDREKAARYGLT--------------- 742 (1051)
T ss_pred CeEEEEECCCHHHHHHHHHHHHHHHhcCCC--ce-eeeccc--cCCCceEEEEECHHHHHHcCCC---------------
Confidence 0000 011111111111100 00 000000 00011000 0111111111110
Q ss_pred CCChhHHHhhhHHHHhhCCCccc-------------------------------cC----CCCCcccccc-ccc-CCCCC
Q 007203 334 RPSTEQFREKLPWFLNALPSADC-------------------------------AK----GGHGAYSTSV-DLN-GYESG 376 (613)
Q Consensus 334 ~p~~~~f~~~l~~~l~~~p~~~~-------------------------------~~----~~~~~y~~~~-~~~-~~~~~ 376 (613)
.++..+.++......+...- .+ ++..-.-+++ ++. +....
T Consensus 743 ---~~~v~~~l~~~~~g~~~g~~~~~~~~~~i~vr~~~~~~~~~~~l~~l~i~~~~~~~~~g~~v~L~~vA~v~~~~~~~ 819 (1051)
T TIGR00914 743 ---VGDVQDTVATAVGGRMSGETFEGDRRFDIVIRLPESLRESPQALRQLPIPLPLSEDARKQFIPLSDVADLRVSPGPN 819 (1051)
T ss_pred ---HHHHHHHHHHHhCCceeeEEEECCEEEeEEEEcChHHhcCHHHHhCcEeeCCCccCCCCcEEEhHHceEEEEecCcc
Confidence 11111111111110000000 00 0000000000 000 00000
Q ss_pred eEEe---eE-EEEecccCCChhHHHHHHHHHHHHHHH-hhhccCcccccccceeeehhhHHHHHHHHHHHHHHHHHHHHH
Q 007203 377 IIQA---SE-FRTFHTPLNKQGDYVNSLRAAREFSSR-MSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFI 451 (613)
Q Consensus 377 ~i~~---s~-~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~v~v 451 (613)
.|.. .| +.+.. +.. ..+..+..+++++..++ ..-+.|+++...|. .+..++...+....++++++++++
T Consensus 820 ~i~r~ng~~~v~v~~-~~~-~~~~~~~~~~v~~~~~~~~~lP~g~~~~~~g~----~~~~~~~~~~l~~~~~~a~~li~l 893 (1051)
T TIGR00914 820 QISRENGKRRVVVSA-NVR-GRDLGSFVDDAKKAIAEQVKLPPGYWITWGGQ----FEQLQSATKRLQIVVPVTLLLIFV 893 (1051)
T ss_pred eEEecCCeEEEEEEE-EeC-CCCHHHHHHHHHHHHHhcCCCCCceEEEecch----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0100 00 11111 111 12345555566555543 11112444433332 234445556677778899999999
Q ss_pred HHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHHHHHHHh---cCCHHHHHHHH
Q 007203 452 VCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVS---HGNRNQRSQKA 528 (613)
Q Consensus 452 v~~l~~~s~~~~~~~~l~i~~~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~~~~~~~---~~~~~~a~~~a 528 (613)
+++++|+|++.+++++++++++.++++..|+++|.++|..+++.+++.+|+.||++||+++++++. ..++++|+.++
T Consensus 894 vL~~~f~s~~~~lii~~~iPl~~~g~~~~l~~~g~~l~~~s~~G~i~l~GivV~naIvlv~~~~~~~~~g~~~~~Ai~~a 973 (1051)
T TIGR00914 894 LLYAAFGNVKDALLVFTGIPFALTGGVFALWLRGIPLSISAAVGFIALSGVAVLNGLVMISFIRKLLEEGPSLDEAVYEG 973 (1051)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999888754 24789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccccccC
Q 007203 529 LSTMGASVFSGITLTKLVGVIVLCFARSE---IFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPSRHIIIEKQQADE 605 (613)
Q Consensus 529 l~~~g~~v~~~~~ltt~~gf~~L~fs~~~---~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~~~~~~~~~~~~~~~~~ 605 (613)
.++..+|+++++ +||++||+||++.++. +++.+. .+.+.++++|++.+|+++|+++.++.++.++. +-.||
T Consensus 974 ~~~r~rpIl~tt-ltti~g~lPl~~~~g~~~~~~~pla-~~v~~gl~~s~~~tL~~vP~l~~~~~~~~~~~----~~~~~ 1047 (1051)
T TIGR00914 974 ALTRVRPVLMTA-LVASLGFVPMAIATGTGAEVQRPLA-TVVIGGIITATLLTLFVLPALYRLVHRRRHKG----RKEHE 1047 (1051)
T ss_pred HHHhhhhHHHHH-HHHHHHHHHHHhcCCCChhhhcCce-EEEEchHHHHHHHHHHHHHHHHHHHHhhhhhh----hhcCC
Confidence 999999999998 7999999999998643 333331 23344688999999999999999987644322 22666
Q ss_pred C
Q 007203 606 P 606 (613)
Q Consensus 606 ~ 606 (613)
|
T Consensus 1048 ~ 1048 (1051)
T TIGR00914 1048 P 1048 (1051)
T ss_pred C
Confidence 6
No 16
>PRK09579 multidrug efflux protein; Reviewed
Probab=99.95 E-value=1.1e-24 Score=258.59 Aligned_cols=528 Identities=16% Similarity=0.142 Sum_probs=310.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhheeeeeccccHhHHHHHHHhc-CCCCCHHHHHHHHHhhhhhHHHH
Q 007203 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSITL 105 (613)
Q Consensus 27 ~~~~l~~~~~a~~~~~Gl~~~~g~~~~~~~~~~~p~l~l~igvd~~~~l~~~~~~~-~~~~~~~~~i~~~l~~~g~~i~~ 105 (613)
++..++++.++++++++.+.++|+++|. ++.+-..+.+|+.+||++|++++++++ .++.++.+++.++.++.+.|++.
T Consensus 358 ~l~~~~~IP~s~~~~~~~l~~~G~~ln~-~sl~gli~~iGi~VddaIvv~e~i~~~~~~G~~~~~A~~~~~~~~~~pil~ 436 (1017)
T PRK09579 358 VLIPVVTIPLSMIGVLFFMQMMGYSINL-LTLLAMVLAIGLVVDDAIVVVENIHRHIEEGKSPFDAALEGAREIAMPVVS 436 (1017)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCchH-HHHHHHHHhhheeecCcEEeHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 4566788999999999999999999997 666666677889999999999988765 45789999999999999999999
Q ss_pred HHHHHHHHHHhhcccC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------ccc---CCc----
Q 007203 106 ASLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIEVHA--------------PIL---GLW---- 161 (613)
Q Consensus 106 tslTt~~~F~~~~~s~---ip~ir~Fgi~~aigv~~~~v~~lt~~pall~~~~--------------~~l---~~~---- 161 (613)
|++||+++|+.+.+.+ -+.++.|++..+.|++++++.++++.|++...+. ++. .++
T Consensus 437 stlTti~~f~Pl~f~~g~~g~~~~~l~~~v~~~l~~S~l~al~l~P~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Y~~~ 516 (1017)
T PRK09579 437 MTITLAAVYAPIGFLTGLTGALFKEFALTLAGAVIISGIVALTLSPMMCALLLRHEENPSGLAHRLDRLFERLKQRYQRA 516 (1017)
T ss_pred HHHHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHHHHH
Confidence 9999999999987654 2678999999999999999999999998873210 000 000
Q ss_pred -----cchhhHHHHHHHHHHHHHHhhhccccccccc---------ccCCCCchhhhHHH---HHHHhhccCCCEEEEEe-
Q 007203 162 -----GVKMVVVSVFLAFTVASIALSTRIEAGLEQQ---------IVLPRDSYLQGYFD---NTTEYLRVGPPLYFVVK- 223 (613)
Q Consensus 162 -----~~k~~vl~~~~~l~~~si~g~~~l~~~~~~~---------~~~p~ds~~~~~~~---~~~~~f~~~~~~~iv~~- 223 (613)
.+|..++++++++++.+.+....++.++=|. -.+|+++++.+..+ .+++.....+.+.-+..
T Consensus 517 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~P~~d~~~~~v~~~~p~gt~l~~t~~~~~~ie~~l~~~p~v~~~~~~ 596 (1017)
T PRK09579 517 LHGTLNTRPVVLVFAVIVLALIPVLLKFTQSELAPEEDQGIIFMMSSSPQPANLDYLNAYTDEFTPIFKSFPEYYSSFQI 596 (1017)
T ss_pred HHHHHcchHHHHHHHHHHHHHHHHHHHhCCcCcCCccCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 0233344444555555555555555554443 26788887766554 34444432222221111
Q ss_pred -cCCCC---------chhhhhhhhhcccccCchhhHHHHHH-hccCCCCcc-cc------C-----CC------CchHHH
Q 007203 224 -DYNYS---------SESRHTNQLCSISQCDSNSLLNEISR-ASSIPELSY-IA------K-----PA------ASWLDD 274 (613)
Q Consensus 224 -~~d~~---------~~~~~~~~~~~~~~~~~~~l~~~i~~-~~~~~~~~~-~~------~-----~~------~~wl~~ 274 (613)
+.+.. ++.+. + ..+.+++.+++++ ++++|+... .. + +. ..-++.
T Consensus 597 ~G~~~~~~~~~~i~l~~~~~-r------~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~~~g~g~~~~v~i~i~gg~d~~~ 669 (1017)
T PRK09579 597 NGFNGVQSGIGGFLLKPWNE-R------ERTQMELLPLVQAKLEEIPGLQIFGFNLPSLPGTGEGLPFQFVINTANDYES 669 (1017)
T ss_pred eccCCCccceEEEEecchHh-c------cCCHHHHHHHHHHHHhcCCCcEEEeecCCCCCCCCCCCCEEEEEECCCCHHH
Confidence 10000 00000 0 0011233444432 233433210 00 0 00 000111
Q ss_pred HHhhcCCCcccccccc-----cCCccCCCCCCCCCC-CCCCCCCCCCCcccCCCcccccCCCCCCCCChhHHHhhhHHHH
Q 007203 275 FLVWTSPEAFGCCRKF-----VNGTYCPPDDQPPCC-SPDEEPCGVNGVCKDCTTCFRHSDLVNNRPSTEQFREKLPWFL 348 (613)
Q Consensus 275 f~~~~~~~~~~~~~~~-----~n~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~~~l~~~l 348 (613)
..++.++.. ...++. .+.++ +..++.+. .+|++....+++ +.++..+.++..+
T Consensus 670 L~~~a~~l~-~~l~~~~g~~~v~~~~--~~~~~el~i~vd~~ka~~~Gl------------------s~~~i~~~l~~~~ 728 (1017)
T PRK09579 670 LLQVAQRVK-QRAQESGKFAFLDIDL--AFDKPEVVVDIDRAKAAQMGV------------------SMQDLGGTLATLL 728 (1017)
T ss_pred HHHHHHHHH-HHHHcCCCcEEeeccc--cCCCceEEEEECHHHHHHcCC------------------CHHHHHHHHHHHh
Confidence 111111100 000000 00000 01111110 011111111111 1122222222111
Q ss_pred hhCCCccc-------------------------------cCCCCCccccccccc-CCCCCeEEe---eE-EEEecccCCC
Q 007203 349 NALPSADC-------------------------------AKGGHGAYSTSVDLN-GYESGIIQA---SE-FRTFHTPLNK 392 (613)
Q Consensus 349 ~~~p~~~~-------------------------------~~~~~~~y~~~~~~~-~~~~~~i~~---s~-~~~~~~~~~~ 392 (613)
+..+-..- .+|..-+-++-.+++ +.....|.. .| ..+.-. .
T Consensus 729 ~G~~~~~~~~~~~~~~I~v~~~~~~r~~~~~L~~l~i~~~~G~~VpL~~va~i~~~~~p~~I~r~n~~r~i~v~~~---~ 805 (1017)
T PRK09579 729 GEGEINRFTIDGRSYKVIAQVERPYRDNPGWLNNYYVKNEQGQLLPLSTLITLSDRARPRQLNQFQQLNSAIISGF---P 805 (1017)
T ss_pred CCceeeEEEeCCEEEEEEEEcChhHhCCHHHHhceEeECCCCCEEEhhHcEEEEEcCCCceEEEeCCeeEEEEEee---C
Confidence 11000000 000000000000000 000001110 01 011101 1
Q ss_pred hhHHHHHHHHHHHHHHH-hhhccCcccccccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHH
Q 007203 393 QGDYVNSLRAAREFSSR-MSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLV 471 (613)
Q Consensus 393 ~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l~i~ 471 (613)
..+..+.++++++..++ ++ .|++....|. +++..+...++...++++++++++++.+.|+|++.+++++++++
T Consensus 806 ~~~~~~~~~~i~~~~~~~lP--~g~~~~~~G~----~~~~~~~~~~l~~~~~~ai~li~lil~~~f~S~~~pliI~~~iP 879 (1017)
T PRK09579 806 IVSMGEAIETVQQIAREEAP--EGFAFDYAGA----SRQYVQEGSALWVTFGLALAIIFLVLAAQFESFRDPLVILVTVP 879 (1017)
T ss_pred CCCHHHHHHHHHHHHHhhCC--CCcEEEeech----HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 12344555666555543 22 3555444443 23322223778888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHHHHHHH---hc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007203 472 MIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLV---SH-GNRNQRSQKALSTMGASVFSGITLTKLVG 547 (613)
Q Consensus 472 ~~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~~~~~~---~~-~~~~~a~~~al~~~g~~v~~~~~ltt~~g 547 (613)
++.++++..+.+.|.++|..+++.+++.+|+.|+++|.+++.+.+ ++ .++++|+.+|.++..+||++++ +||++|
T Consensus 880 la~~G~~~~L~i~~~~l~~~s~~G~i~L~GivVnnaIllvd~~~~~r~~~G~~~~~Ai~~a~~~R~RPIlmTt-lTti~g 958 (1017)
T PRK09579 880 LSICGALIPLFLGVSSMNIYTQVGLVTLIGLISKHGILIVEFANQLRHEQGLSRREAIEEAAAIRLRPVLMTT-AAMVFG 958 (1017)
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHcCcEEehHHHHHHHHhcCCCHHHHHHHHHHHhhhHHHHHH-HHHHHH
Confidence 999999999999999999999999999999999999988875542 32 4789999999999999999998 799999
Q ss_pred HHHHhhccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 007203 548 VIVLCFARSE---IFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPSR 594 (613)
Q Consensus 548 f~~L~fs~~~---~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~~~~~~ 594 (613)
++||++.... ..+.+. ..++.++++|.+.+|+++|+++.++.++++
T Consensus 959 llPla~~~g~g~~~~~plA-~~iigGL~~st~ltL~~iP~ly~l~~~~~~ 1007 (1017)
T PRK09579 959 MVPLILATGAGAVSRFDIG-LVIATGMSIGTLFTLFVLPCIYTLLAKPDA 1007 (1017)
T ss_pred HHHHHHhcCCChHHhCCce-eeeehHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999997543 222221 223346888999999999999999886654
No 17
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=99.95 E-value=7.1e-25 Score=260.84 Aligned_cols=535 Identities=14% Similarity=0.141 Sum_probs=314.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhheeeeeccccHhHHHHHHHhc-CCCCCHHHHHHHHHhhhhhHHH
Q 007203 26 LGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSIT 104 (613)
Q Consensus 26 l~~~~l~~~~~a~~~~~Gl~~~~g~~~~~~~~~~~p~l~l~igvd~~~~l~~~~~~~-~~~~~~~~~i~~~l~~~g~~i~ 104 (613)
.++...+++.+|++++++++.++|+++|. ++.+...+.+|+.+||+++++++++++ .++.++.+++.++.++.+.|++
T Consensus 367 ~~~i~~~~ip~s~~~~~~~l~~~g~~ln~-~sl~gl~~~iG~~Vd~aIvv~e~i~~~~~~g~~~~~aa~~~~~~~~~~vl 445 (1040)
T PRK10503 367 ATIIPGVAVPLSLIGTFAVMVFLDFSINN-LTLMALTIATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTII 445 (1040)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhCCCHHH-HHHHHHHHheeeeecCeEEEehhHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 46777889999999999999999999997 666666677889999999999888765 4566788999999999999999
Q ss_pred HHHHHHHHHHHhhcccCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------------ccc---CCc-
Q 007203 105 LASLSEFLAFAVGSFIPM---PACRVFSMFAALAVLLDFFLQVTAFVALIEVHA----------------PIL---GLW- 161 (613)
Q Consensus 105 ~tslTt~~~F~~~~~s~i---p~ir~Fgi~~aigv~~~~v~~lt~~pall~~~~----------------~~l---~~~- 161 (613)
.+++||+++|+-+.+++- ..+|.|++..++|++++++.++++.|.+..++. ++. .++
T Consensus 446 ~~tltti~~f~Pl~~~~g~~G~~~~~~~~~v~~~l~~S~~~al~~~P~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~y 525 (1040)
T PRK10503 446 SLTFSLIAVLIPLLFMGDIVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASERMFDRVIAAY 525 (1040)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCccccccchHHHHHHHHHHHHHHHH
Confidence 999999999999888765 689999999999999999999999998863211 000 000
Q ss_pred --------cchhhHHHHHHHHHHHHHHhhhcccccccccc---------cCCCCchhhhHHH---HHHHhhccCCCEEEE
Q 007203 162 --------GVKMVVVSVFLAFTVASIALSTRIEAGLEQQI---------VLPRDSYLQGYFD---NTTEYLRVGPPLYFV 221 (613)
Q Consensus 162 --------~~k~~vl~~~~~l~~~si~g~~~l~~~~~~~~---------~~p~ds~~~~~~~---~~~~~f~~~~~~~iv 221 (613)
.+|+.++++++++++++++...+++.++=|.. .+|+++.+.+..+ .+++.....+.+.-+
T Consensus 526 ~~~l~~~l~~~~~~~~~~~~~~~~s~~~~~~l~~~f~P~~d~~~i~v~~~~p~gt~l~~t~~~~~~ve~~l~~~~~v~~~ 605 (1040)
T PRK10503 526 GRGLAKVLNHPWLTLSVALSTLLLTVLLWIFIPKGFFPVQDNGIIQGTLQAPQSSSFANMAQRQRQVADVILQDPAVQSL 605 (1040)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCccCCccCCcEEEEEEECCCCCCHHHHHHHHHHHHHHHhhCCCeEEE
Confidence 12445566666667777776666666554432 4577777655533 345544322222211
Q ss_pred Ee--cCCCCchh----hhhhhhhccccc--CchhhHHHHHH-hccCCCCccc-------------cCCC------CchHH
Q 007203 222 VK--DYNYSSES----RHTNQLCSISQC--DSNSLLNEISR-ASSIPELSYI-------------AKPA------ASWLD 273 (613)
Q Consensus 222 ~~--~~d~~~~~----~~~~~~~~~~~~--~~~~l~~~i~~-~~~~~~~~~~-------------~~~~------~~wl~ 273 (613)
.. +.+-.++. +..-.+...... +.+++.+++++ ++++|+.... .+.. ..-.+
T Consensus 606 ~~~~G~~~~~~~~~~~~~~v~l~~~~~r~~~~~~v~~~lr~~l~~~p~~~~~~~~~~~~~~~~~~~~~~v~i~l~G~d~~ 685 (1040)
T PRK10503 606 TSFVGVDGTNPSLNSARLQINLKPLDERDDRVQKVIARLQTAVAKVPGVDLYLQPTQDLTIDTQVSRTQYQFTLQATSLD 685 (1040)
T ss_pred EEEeccCCCCCCCceEEEEEEecchhhccCCHHHHHHHHHHHHhcCCCcEEeccCCccccccCCCCCCCeEEEEECCCHH
Confidence 11 10000000 000000000000 11234444432 2333331100 0000 00112
Q ss_pred HHHhh-------cCCCcccccccccCCccCCCCCCCCC-CCCCCCCCCCCCcccCCCcccccCCCCCCCCChhHHHhhhH
Q 007203 274 DFLVW-------TSPEAFGCCRKFVNGTYCPPDDQPPC-CSPDEEPCGVNGVCKDCTTCFRHSDLVNNRPSTEQFREKLP 345 (613)
Q Consensus 274 ~f~~~-------~~~~~~~~~~~~~n~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~~~l~ 345 (613)
+..++ +++.+ -..+ .+.++ .+..+.+ ...|.+....+++ +.++..+.++
T Consensus 686 ~L~~~a~~l~~~l~~~p--gv~~-v~~~~--~~~~~e~~v~id~~k~~~~Gl------------------s~~~v~~~l~ 742 (1040)
T PRK10503 686 ALSTWVPKLMEKLQQLP--QLSD-VSSDW--QDKGLVAYVNVDRDSASRLGI------------------SMADVDNALY 742 (1040)
T ss_pred HHHHHHHHHHHHHhcCC--CeEE-EEccc--cCCCceEEEEECHHHHHHcCC------------------CHHHHHHHHH
Confidence 22222 22110 0000 00000 0000000 0011111111111 1111222221
Q ss_pred HHHhhCCCccc------------------------------cCCCCC-ccccccccc-CCCCCeEEe---eE-EEEeccc
Q 007203 346 WFLNALPSADC------------------------------AKGGHG-AYSTSVDLN-GYESGIIQA---SE-FRTFHTP 389 (613)
Q Consensus 346 ~~l~~~p~~~~------------------------------~~~~~~-~y~~~~~~~-~~~~~~i~~---s~-~~~~~~~ 389 (613)
......+...- ..+|+. +..+--+++ +.....|.. .+ ..+.. +
T Consensus 743 ~~~~g~~~~~~~~~~~~~~I~v~~~~~~~~~~~~L~~l~i~~~~G~~v~L~~vA~i~~~~~~~~I~r~n~~~~v~v~~-~ 821 (1040)
T PRK10503 743 NAFGQRLISTIYTQANQYRVVLEHNTENTPGLAALDTIRLTSSDGGVVPLSSIATIEQRFGPLSINHLDQFPSTTISF-N 821 (1040)
T ss_pred HHhCCceeeEEEECCEEEEEEEEeChhHhCCHHHHccEEEECCCCCEEEhhheEEEEEcCCcccEEeeCCeEEEEEEE-E
Confidence 11111000000 000000 000000000 000001110 00 01110 1
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhccCcccccccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHH
Q 007203 390 LNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVV 469 (613)
Q Consensus 390 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l~ 469 (613)
..+..+..+.++++++..++..-+.|++....|. .+..++...++...++++++++++++...|+|++.+++++++
T Consensus 822 ~~~g~~~~~~~~~i~~~~~~~~lP~g~~~~~~g~----~~~~~~~~~~l~~~~~iai~li~l~L~~~f~S~~~pliI~~t 897 (1040)
T PRK10503 822 VPDGYSLGDAVQAIMDTEKTLNLPADITTQFQGS----TLAFQSALGSTVWLIVAAVVAMYIVLGVLYESFIHPITILST 897 (1040)
T ss_pred eCCCCCHHHHHHHHHHHHHhcCCCCCeEEEeccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHH
Confidence 1112244556666666555432112444433332 133344556677788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHHHHHHH---hc-CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007203 470 LVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLV---SH-GNRNQRSQKALSTMGASVFSGITLTKL 545 (613)
Q Consensus 470 i~~~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~~~~~~---~~-~~~~~a~~~al~~~g~~v~~~~~ltt~ 545 (613)
++++.++++..|.++|.++|..+++.+++.+|+.||++|.+++...+ ++ .++++|+.+|.++..+||++++ +||+
T Consensus 898 IPls~~G~~~~l~l~g~~l~~~sliGli~l~GivV~naIvlvd~~~~~~~~~G~~~~eAi~~a~~~R~rPIlmTt-ltti 976 (1040)
T PRK10503 898 LPTAGVGALLALMIAGSELDVIAIIGIILLIGIVKKNAIMMIDFALAAEREQGMSPRDAIYQACLLRFRPILMTT-LAAL 976 (1040)
T ss_pred HHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHcCeEEEehHHhHHHHHcCCCHHHHHHHHHhhhhhhHHHHH-HHHH
Confidence 99999999999999999999999999999999999999999976543 22 4789999999999999999998 7999
Q ss_pred HHHHHHhhccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 007203 546 VGVIVLCFARSE---IFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGP 591 (613)
Q Consensus 546 ~gf~~L~fs~~~---~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~~~ 591 (613)
+||+||++.... +++.+. ..+++++++|.+.+|+++|+++.++.+
T Consensus 977 ~gllPlal~~G~g~e~~~pla-~~ii~GL~~St~ltL~vvP~ly~~~~~ 1024 (1040)
T PRK10503 977 LGALPLMLSTGVGAELRRPLG-ICMVGGLIVSQVLTLFTTPVIYLLFDR 1024 (1040)
T ss_pred HHHHHHHHhcCCChHHhCcch-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998643 444442 234456888999999999999999844
No 18
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=99.94 E-value=4.2e-24 Score=254.45 Aligned_cols=530 Identities=14% Similarity=0.110 Sum_probs=311.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhheeeeeccccHhHHHHHHHhcC--CCCCHHHHHHHHHhhhhhHHH
Q 007203 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP--MELVLETRISNALVEVGPSIT 104 (613)
Q Consensus 27 ~~~~l~~~~~a~~~~~Gl~~~~g~~~~~~~~~~~p~l~l~igvd~~~~l~~~~~~~~--~~~~~~~~i~~~l~~~g~~i~ 104 (613)
++..++++.+++++++|++.++|+++|. ++.+.+.+.+|+.+||++|++++++++. ++.++++++.++.++.+.|++
T Consensus 365 ~li~~~~iP~si~~t~~~~~~~G~~ln~-~sl~glii~iGi~Vd~aIvvve~i~~~~~~~G~~~~~Ai~~a~~~~~~~i~ 443 (1037)
T PRK10555 365 TLIPTIAVPVVLMGTFSVLYAFGYSINT-LTMFAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALV 443 (1037)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCCChhH-HHHHHHHHHhhheecCeEEeHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 6677888899999999999999999997 7788888889999999999999988753 478999999999999999999
Q ss_pred HHHHHHHHHHHhhcccCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------------c-------c---C
Q 007203 105 LASLSEFLAFAVGSFIPM---PACRVFSMFAALAVLLDFFLQVTAFVALIEVHAP------------I-------L---G 159 (613)
Q Consensus 105 ~tslTt~~~F~~~~~s~i---p~ir~Fgi~~aigv~~~~v~~lt~~pall~~~~~------------~-------l---~ 159 (613)
.+++||+++|+-+.+.+- ..+|.|++..+.+++++++.++++.|++.....+ + + .
T Consensus 444 ~stltti~~flPl~~~~G~~g~~~~~l~~~v~~~l~~S~~~al~l~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (1037)
T PRK10555 444 GIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFGWFNRMFNRNA 523 (1037)
T ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccchhHHHHHHHHHHHHH
Confidence 999999999999887632 4679999999999999999999999988732110 0 0 0
Q ss_pred Cc---------cchhhHHHHHHHHHHHHHHhhhcccccccccc---------cCCCCchhhhHHHHH---HHhhcc--CC
Q 007203 160 LW---------GVKMVVVSVFLAFTVASIALSTRIEAGLEQQI---------VLPRDSYLQGYFDNT---TEYLRV--GP 216 (613)
Q Consensus 160 ~~---------~~k~~vl~~~~~l~~~si~g~~~l~~~~~~~~---------~~p~ds~~~~~~~~~---~~~f~~--~~ 216 (613)
++ .+|..++++.+++++++++...+++.++=|.. .+|+++++.+..+.. ++.... .+
T Consensus 524 ~~Y~~~L~~~l~~~~~~l~~~~~~~~~~~~l~~~l~~~f~P~~d~~~~~v~~~~p~gt~l~~t~~~~~~~e~~l~~~~~~ 603 (1037)
T PRK10555 524 ERYEKGVAKILHRSLRWILIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSVQLPSGSTQQQTLKVVEKVEKYYFTHEKD 603 (1037)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCcCCcccCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 00 01223444555555666665566666554422 578888877665543 444321 11
Q ss_pred CEEEEEe--c-CCCC-chhhhhhhh-hcc-c--c-----cCchhhHHHHHH-hccCCCCcccc-------C-----C---
Q 007203 217 PLYFVVK--D-YNYS-SESRHTNQL-CSI-S--Q-----CDSNSLLNEISR-ASSIPELSYIA-------K-----P--- 267 (613)
Q Consensus 217 ~~~iv~~--~-~d~~-~~~~~~~~~-~~~-~--~-----~~~~~l~~~i~~-~~~~~~~~~~~-------~-----~--- 267 (613)
.+.-+.. + .... .+. ..++ -.. + . ...+++.+++.+ +.++|+..+.. + +
T Consensus 604 ~v~~~~~~~G~~~~~~~~~--~~~~~v~l~~~~~r~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~~~~~g~~~~v~v 681 (1037)
T PRK10555 604 NVMSVFATVGSGPGGNGQN--VARMFIRLKDWDERDSKTGTSFAIIERATKAFNKIKEARVIASSPPAISGLGSSAGFDM 681 (1037)
T ss_pred CeEEEEEEeccCCCCCCCc--eEEEEEEecCHHhCCCccCCHHHHHHHHHHHHhcCCCcEEEeeccccCCCCCCCCCEEE
Confidence 2211111 1 0000 000 0000 000 0 0 001223333322 22333321100 0 0
Q ss_pred --------CC----chHHHHHhhcCCCcccccccccCCccCCCCCCCCC-CCCCCCCCCCCCcccCCCcccccCCCCCCC
Q 007203 268 --------AA----SWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPC-CSPDEEPCGVNGVCKDCTTCFRHSDLVNNR 334 (613)
Q Consensus 268 --------~~----~wl~~f~~~~~~~~~~~~~~~~n~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (613)
.. .+-++..+.+++.+ -..+ .+.+. ..+++.+ ..+|.+.+..+++.
T Consensus 682 ~l~g~~g~d~~~L~~~a~~l~~~l~~~~--gv~~-v~~~~--~~~~~~l~i~id~~k~~~~Gls---------------- 740 (1037)
T PRK10555 682 ELQDHAGAGHDALMAARNQLLALAAKNP--ELTR-VRHNG--LDDSPQLQIDIDQRKAQALGVS---------------- 740 (1037)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHHhcCC--CeEE-EecCC--cCCCceEEEEECHHHHHHcCCC----------------
Confidence 00 00111111111110 0000 00000 0001100 00111111111110
Q ss_pred CChhHHHhhhHHHHh--------------------------------hCCCccccCCCCCccccccccc-CCCCCeEEe-
Q 007203 335 PSTEQFREKLPWFLN--------------------------------ALPSADCAKGGHGAYSTSVDLN-GYESGIIQA- 380 (613)
Q Consensus 335 p~~~~f~~~l~~~l~--------------------------------~~p~~~~~~~~~~~y~~~~~~~-~~~~~~i~~- 380 (613)
.++..+.++..++ +.+-. ..+|..-+..+--+++ +.....|..
T Consensus 741 --~~~v~~~l~~~~~G~~~~~~~~~~~~~~v~v~~~~~~r~~~~~l~~l~i~-~~~G~~vpL~~vA~v~~~~~~~~i~r~ 817 (1037)
T PRK10555 741 --IDDINDTLQTAWGSSYVNDFMDRGRVKKVYVQAAAPYRMLPDDINLWYVR-NKDGGMVPFSAFATSRWETGSPRLERY 817 (1037)
T ss_pred --HHHHHHHHHHHhcCceeeEEeeCCeEEEEEEEeChhHhCCHHHHhheEee-CCCCCEEEhhHcEEEEEcCCccceeec
Confidence 1111111111100 00000 0001000000000000 000001110
Q ss_pred --eE-EEEecccCCChhHHHHHHHHHHHHHHHhhhccCcccccccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007203 381 --SE-FRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMT 457 (613)
Q Consensus 381 --s~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~v~vv~~l~~ 457 (613)
.| ..+.. +..+..+..+..++++++.+++++ |++....|.. ++...........++++++++++++.+.|
T Consensus 818 n~~~~v~v~~-~~~~g~~~~~~~~~i~~~~~~lP~--g~~~~~~G~~----~~~~~~~~~~~~~~~~al~lv~~il~~~f 890 (1037)
T PRK10555 818 NGYSAVEIVG-EAAPGVSTGTAMDIMESLVKQLPN--GFGLEWTAMS----YQERLSGAQAPALYAISLLVVFLCLAALY 890 (1037)
T ss_pred CCceEEEEEE-EcCCCCCHHHHHHHHHHHHHhCCC--CcEEEecChH----HHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 00 01111 111112334556666666665542 5655555542 22222233445566788888999999999
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHHHHHHHh---cCCHHHHHHHHHHHHHH
Q 007203 458 SSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVS---HGNRNQRSQKALSTMGA 534 (613)
Q Consensus 458 ~s~~~~~~~~l~i~~~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~~~~~~~---~~~~~~a~~~al~~~g~ 534 (613)
+|++.++++++++++++++.+..|+++|.++|..+++.+++.+|+.||++|.+++...+. ..++++|+.+|-++..+
T Consensus 891 ~s~~~pliI~~~IPlal~G~l~~L~i~g~~l~~~sl~Gli~l~GivV~naIvlvd~i~~~~~~G~~~~~Ai~~A~~~RlR 970 (1037)
T PRK10555 891 ESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANEMNQKGHDLFEATLHASRQRLR 970 (1037)
T ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHcCeEEeHHHHHHHHHcCCCHHHHHHHHHHhhhh
Confidence 999999999999999999999999999999999999999999999999999999876643 34789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 007203 535 SVFSGITLTKLVGVIVLCFARS---EIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPP 592 (613)
Q Consensus 535 ~v~~~~~ltt~~gf~~L~fs~~---~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~~~~ 592 (613)
||++++ +||++|++||+++.+ ++++.+. ..++.++++|.+.+|+++|+++.++.++
T Consensus 971 PIlmTt-ltti~gllPlal~~g~g~~~~~pla-~~ii~GL~~St~ltL~vvP~ly~~~~~~ 1029 (1037)
T PRK10555 971 PILMTS-LAFIFGVLPMATSTGAGSGSQHAVG-TGVMGGMISATILAIFFVPLFFVLVRRR 1029 (1037)
T ss_pred hHHHHH-HHHHHHHHHHHHhcCCChHHhcccH-HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999998 799999999999854 3444442 2344568899999999999999987644
No 19
>PRK09577 multidrug efflux protein; Reviewed
Probab=99.94 E-value=2.7e-24 Score=255.95 Aligned_cols=536 Identities=16% Similarity=0.157 Sum_probs=313.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhheeeeeccccHhHHHHHHHhc--CCCCCHHHHHHHHHhhhhhHHH
Q 007203 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ--PMELVLETRISNALVEVGPSIT 104 (613)
Q Consensus 27 ~~~~l~~~~~a~~~~~Gl~~~~g~~~~~~~~~~~p~l~l~igvd~~~~l~~~~~~~--~~~~~~~~~i~~~l~~~g~~i~ 104 (613)
++..++++.++++.+++++.++|+++|. ++.+...+.+|+.+||+++++++++++ .++.++.+++.++.++.+.|++
T Consensus 364 ~liv~~~iP~s~~~~~~~m~~~g~~ln~-~sl~gl~~~iGi~VD~aIvvie~i~~~~~~~G~~~~~A~~~a~~~~~~~i~ 442 (1032)
T PRK09577 364 TLIPTLVVPVALLGTFGVMLAAGFSINV-LTMFGMVLAIGILVDDAIVVVENVERLMVEEGLSPYDATVKAMKQISGAIV 442 (1032)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHH-HHHHHHHHheeeEecCcEEEehHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 6677888999999999999999999997 777788888999999999999998775 3578899999999999999999
Q ss_pred HHHHHHHHHHHhhcccC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------c-------c---CC
Q 007203 105 LASLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIEVHAP-----------I-------L---GL 160 (613)
Q Consensus 105 ~tslTt~~~F~~~~~s~---ip~ir~Fgi~~aigv~~~~v~~lt~~pall~~~~~-----------~-------l---~~ 160 (613)
.+++||+++|+-+.+.+ -..++.|++..+++++++++.++++.|++...+.+ + + .+
T Consensus 443 ~~tlt~~~~flPl~~~~g~~g~~~~~~~~~v~~~l~~S~~~al~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 522 (1032)
T PRK09577 443 GITVVLTSVFVPMAFFGGAVGNIYRQFALSLAVSIGFSAFLALSLTPALCATLLKPVDGDHHEKRGFFGWFNRFVARSTQ 522 (1032)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccchHHHHHHHHHHHHHH
Confidence 99999999999887654 34689999999999999999999999988732210 0 0 00
Q ss_pred cc---------chhhHHHHHHHHHHHHHHhhhccccccccc----c-----cCCCCchhhhHHHH---HHHhhccCCCEE
Q 007203 161 WG---------VKMVVVSVFLAFTVASIALSTRIEAGLEQQ----I-----VLPRDSYLQGYFDN---TTEYLRVGPPLY 219 (613)
Q Consensus 161 ~~---------~k~~vl~~~~~l~~~si~g~~~l~~~~~~~----~-----~~p~ds~~~~~~~~---~~~~f~~~~~~~ 219 (613)
++ +|...+++.+++++++++...++..++-|. . .+|+++++.+..+. ++++....+.+.
T Consensus 523 ~Y~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~P~~d~~~~~v~~~~p~gtsl~~t~~~~~~ve~~l~~~~~v~ 602 (1032)
T PRK09577 523 RYATRVGAILKRPLRWLVVYGALTAAAALLFTRLPTAFLPDEDQGNFMVMVIRPQGTPLAETMQSVREVESYLRRHEPVA 602 (1032)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCcCCcccCceEEEEEEcCCCCCHHHHHHHHHHHHHHHhhCCCce
Confidence 00 111223333334444544445555544332 2 67888877666554 344543222222
Q ss_pred EEE-e-cCCCCchhhhhhhh-hcc-c--c-----cCchhhHHHHH-HhccCCCCc-ccc----------C---------C
Q 007203 220 FVV-K-DYNYSSESRHTNQL-CSI-S--Q-----CDSNSLLNEIS-RASSIPELS-YIA----------K---------P 267 (613)
Q Consensus 220 iv~-~-~~d~~~~~~~~~~~-~~~-~--~-----~~~~~l~~~i~-~~~~~~~~~-~~~----------~---------~ 267 (613)
-+. . +.+...+..+..++ -.. + . ...+++.+++. ++.++|+.. +.. + +
T Consensus 603 ~~~~~~g~~~~~~~~~~~~~~v~l~~~~~r~~~~~~~~~i~~~l~~~~~~~p~~~~~~~~~~~~~~~g~~~~i~i~i~g~ 682 (1032)
T PRK09577 603 YTFALGGFNLYGEGPNGGMIFVTLKDWKERKAARDHVQAIVARINERFAGTPNTTVFAMNSPALPDLGSTSGFDFRLQDR 682 (1032)
T ss_pred EEEEEeccCCCCCCcceEEEEEEecChhhccccccCHHHHHHHHHHHhccCCCceEEeeccccccCCCCCCcEEEEEEcC
Confidence 111 1 10100000000000 000 0 0 01123444443 222333322 000 0 0
Q ss_pred ---C----CchHHHHHhhcCCCcccccccccCCccCCCCCCCCCC-CCCCCCCCCCCcccCCCcccccCCCCCCCCChhH
Q 007203 268 ---A----ASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCC-SPDEEPCGVNGVCKDCTTCFRHSDLVNNRPSTEQ 339 (613)
Q Consensus 268 ---~----~~wl~~f~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 339 (613)
. ..+-++..+.+++.+ ..++ ...+. .++++.+. .+|++....+++ +.++
T Consensus 683 ~~~d~~~l~~~a~~l~~~l~~~~--g~~~-v~~~~--~~~~~~~~i~~d~~~a~~~Gl------------------s~~~ 739 (1032)
T PRK09577 683 GGLGYAAFVAAREQLLAEGAKDP--ALTD-LMFAG--TQDAPQLKLDIDRAKASALGV------------------SMDE 739 (1032)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCC--CeEE-eeccc--cCCCceEEEEECHHHHHHcCC------------------CHHH
Confidence 0 011112222221110 0000 00000 01111110 011111111111 0111
Q ss_pred HHhhhHHHHhhCCCcccc------------------------------CCCCC-ccccccccc-CCCCCeEEe---eE-E
Q 007203 340 FREKLPWFLNALPSADCA------------------------------KGGHG-AYSTSVDLN-GYESGIIQA---SE-F 383 (613)
Q Consensus 340 f~~~l~~~l~~~p~~~~~------------------------------~~~~~-~y~~~~~~~-~~~~~~i~~---s~-~ 383 (613)
..+.++..++..+-.+.. .+|+. +-.+--++. +.....|.. .| +
T Consensus 740 i~~~l~~~~~g~~~~~~~~~~~~~~i~v~~~~~~~~~~~~l~~~~i~~~~G~~vpL~~va~i~~~~~~~~I~r~n~~r~~ 819 (1032)
T PRK09577 740 INTTLAVMFGSDYIGDFMHGSQVRRVIVQADGRHRLDPDDVKKLRVRNAQGEMVPLAAFATLHWTLGPPQLTRYNGYPSF 819 (1032)
T ss_pred HHHHHHHHhcCCeeeEEecCCeEEEEEEEeChhHhCCHHHHhhEEEECCCCCEEEhhHhEEEEEccCcceEEecCCceEE
Confidence 111111111110000000 00000 000000000 000000100 01 1
Q ss_pred EEecccCCChhHHHHHHHHHHHHHHHhhhccCcccccccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhH
Q 007203 384 RTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSS 463 (613)
Q Consensus 384 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~ 463 (613)
.+.. +.....+..+..++++++.++++ .|+++...|.. ++......++...+.++++++++++.+.|+|++.+
T Consensus 820 ~v~~-~~~~~~~~~~~~~~i~~~~~~lP--~g~~~~~~G~~----~~~~~~~~~l~~~~~~ai~li~lvl~~~F~S~~~p 892 (1032)
T PRK09577 820 TING-SAAPGHSSGEAMAAIERIAATLP--AGIGYAWSGQS----FEERLSGAQAPMLFALSVLVVFLALAALYESWSIP 892 (1032)
T ss_pred EEEE-EeCCCCChHHHHHHHHHHHHhCC--CCcEEEeccHH----HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhHHhH
Confidence 1111 11111234456666666666554 35665555542 23333344566678899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHHHH
Q 007203 464 AIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVS---HGNRNQRSQKALSTMGASVFSGI 540 (613)
Q Consensus 464 ~~~~l~i~~~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~~~~~~~---~~~~~~a~~~al~~~g~~v~~~~ 540 (613)
++++++++++.++.+..+++.|.+||..+++.+++.+|+.|+++|++++++.+. +.+.++|+.+|.++..+||++++
T Consensus 893 lii~~~iPl~l~G~~~~l~l~g~~l~~~s~~G~i~L~GivVnnaIllvd~~~~~~~~G~~~~~Ai~~a~~~R~RPIlmTt 972 (1032)
T PRK09577 893 FAVMLVVPLGVIGAVLGVTLRGMPNDIYFKVGLIATIGLSAKNAILIVEVAKDLVAQRMSLADAALEAARLRLRPIVMTS 972 (1032)
T ss_pred HHHHHHhhHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHcCcEEEeHHHHHHHHcCCCHHHHHHHHHHHhHhhHHHHH
Confidence 999999999999999999999999999999999999999999999999877643 24789999999999999999998
Q ss_pred HHHHHHHHHHHhhccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcc
Q 007203 541 TLTKLVGVIVLCFARSE---IFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPSRH 595 (613)
Q Consensus 541 ~ltt~~gf~~L~fs~~~---~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~~~~~~~ 595 (613)
+||++|++||+++... +.+.+. ...+.++++|.+.+|+++|+++.++.+-+++
T Consensus 973 -ltti~gllPla~~~g~g~~~~~pla-~~iigGL~~sT~lTL~vvP~ly~l~~~~~~~ 1028 (1032)
T PRK09577 973 -LAFGVGVLPLAFASGAASGAQIAIG-TGVLGGVITATVLAVFLVPLFFVVVGRLFDV 1028 (1032)
T ss_pred -HHHHHHHHHHHHccCCChHHhcCch-hhhhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 7999999999998543 333332 2234568889999999999999998665444
No 20
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=99.94 E-value=4.9e-24 Score=253.88 Aligned_cols=531 Identities=15% Similarity=0.092 Sum_probs=304.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhheeeeeccccHhHHHHHHHhcC--CCCCHHHHHHHHHhhhhhHHH
Q 007203 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP--MELVLETRISNALVEVGPSIT 104 (613)
Q Consensus 27 ~~~~l~~~~~a~~~~~Gl~~~~g~~~~~~~~~~~p~l~l~igvd~~~~l~~~~~~~~--~~~~~~~~i~~~l~~~g~~i~ 104 (613)
++...+++.++++++++++.++|+++|. ++.+...+.+|+.+||+++++++++++. ++.++.+++.++.++.++|++
T Consensus 365 ~li~~~~iP~sl~~~~~~~~~~g~~ln~-~sl~glil~iGi~VD~aIvvie~i~~~~~~~G~~~~~A~~~~~~~v~~~i~ 443 (1049)
T PRK15127 365 TLIPTIAVPVVLLGTFAVLAAFGFSINT-LTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALV 443 (1049)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHhH-HHHHHHHHHHHhhccceEEEeHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 6677788899999999999999999997 6777677778999999999999987753 477899999999999999999
Q ss_pred HHHHHHHHHHHhhcccC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------cc-----------
Q 007203 105 LASLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIEVHA-------------PI----------- 157 (613)
Q Consensus 105 ~tslTt~~~F~~~~~s~---ip~ir~Fgi~~aigv~~~~v~~lt~~pall~~~~-------------~~----------- 157 (613)
.+++||+++|+-+.+.+ -..++.|++..+.+++++++.++++.|++...+. ++
T Consensus 444 ~~tltt~~~f~Pl~~~~G~~g~~~~~~~~~~~~~l~~S~l~al~~vP~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (1049)
T PRK15127 444 GIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGWFNRMFEKS 523 (1049)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccchhhHHHHHHHHHHHH
Confidence 99999999999988743 3467999999999999999999999998763211 00
Q ss_pred ----------cCCccchhhHHHHHHHHHHHHHHhhhcccccccccc---------cCCCCchhhhHHHH---HHHhhcc-
Q 007203 158 ----------LGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQI---------VLPRDSYLQGYFDN---TTEYLRV- 214 (613)
Q Consensus 158 ----------l~~~~~k~~vl~~~~~l~~~si~g~~~l~~~~~~~~---------~~p~ds~~~~~~~~---~~~~f~~- 214 (613)
..+|+.+ .+.+.+++++++++....++.++=|.. .+|+++.+.+..+. +++....
T Consensus 524 ~~~Y~~~l~~~l~~~~~--~~~i~~~~~~~~~~l~~~~~~~f~P~~d~~~~~v~v~~p~gt~l~~t~~~~~~ve~~l~~~ 601 (1049)
T PRK15127 524 THHYTDSVGNILRSTGR--YLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFLTMVQLPAGATQERTQKVLNEVTDYYLTK 601 (1049)
T ss_pred HHHHHHHHHHHHccchH--HHHHHHHHHHHHHHHHHhCCCCcCCcccCceEEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 0111112 222333344445444445555553321 57888877666544 3444421
Q ss_pred -CCCE---EEEEecC-CC-C-chhhh---h--hhhhcccccCchhhHHHHHH-hccCCCCcc--cc---------C----
Q 007203 215 -GPPL---YFVVKDY-NY-S-SESRH---T--NQLCSISQCDSNSLLNEISR-ASSIPELSY--IA---------K---- 266 (613)
Q Consensus 215 -~~~~---~iv~~~~-d~-~-~~~~~---~--~~~~~~~~~~~~~l~~~i~~-~~~~~~~~~--~~---------~---- 266 (613)
.+.+ +..+... +. . +..+. . .+-+.....+.+++.+++++ +.++|+... .. +
T Consensus 602 ~~~~v~~~~~~~G~~~~~~~~~~~~~~v~l~~~~~r~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~v~ 681 (1049)
T PRK15127 602 EKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPGEENKVEAITMRATRAFSQIKDAMVFAFNLPAIVELGTATGFD 681 (1049)
T ss_pred CCCCeeEEEEEeccCCCCCCCceEEEEEEecCHHhCcCcccCHHHHHHHHHHHHhcCCCceeeeecCCCCCCCCCCCCEE
Confidence 1112 1111100 00 0 00000 0 00000000001222333221 122332110 00 0
Q ss_pred -----C---CC----chHHHHHhhcCCCcccccccccCCccCCCCCCCCCC-CCCCCCCCCCCcccCCCcccccCCCCCC
Q 007203 267 -----P---AA----SWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCC-SPDEEPCGVNGVCKDCTTCFRHSDLVNN 333 (613)
Q Consensus 267 -----~---~~----~wl~~f~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (613)
+ .. .+-++..+.+++.+ +...+ .+.+. ...++.+. ..|.+.+..+++
T Consensus 682 i~v~g~~~~d~~~L~~~a~~l~~~l~~~~-g~~~~-v~~~~--~~~~~~i~i~vd~~~~~~~Gl---------------- 741 (1049)
T PRK15127 682 FELIDQAGLGHEKLTQARNQLLGEAAKHP-DMLVG-VRPNG--LEDTPQFKIDIDQEKAQALGV---------------- 741 (1049)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHhCC-Cceee-eecCc--cCCCceEEEEECHHHHHHcCC----------------
Confidence 0 00 11112222222110 00000 00000 00111110 112121111111
Q ss_pred CCChhHHHhhhHHHHhhCCCccc------------------------------cCCCCCcccccc-ccc-CCCCCeEE--
Q 007203 334 RPSTEQFREKLPWFLNALPSADC------------------------------AKGGHGAYSTSV-DLN-GYESGIIQ-- 379 (613)
Q Consensus 334 ~p~~~~f~~~l~~~l~~~p~~~~------------------------------~~~~~~~y~~~~-~~~-~~~~~~i~-- 379 (613)
+.++..+.++..........- ..+|+.-.-+++ +++ +.....+.
T Consensus 742 --s~~~v~~~l~~~~~G~~~~~~~~~~~~~~v~v~~~~~~~~~~~~l~~l~i~~~~G~~V~L~~vA~v~~~~~~~~i~r~ 819 (1049)
T PRK15127 742 --SISDINTTLGAAWGGSYVNDFIDRGRVKKVYVMSEAKYRMLPDDIGDWYVRAADGQMVPFSAFSSSRWEYGSPRLERY 819 (1049)
T ss_pred --CHHHHHHHHHHHhCCceeeEEeeCCEEEEEEEEEChhhcCCHHHHhhEEeECCCCCEEEhhHeEEEEEccCccceeee
Confidence 011111111111110000000 000000000000 000 00000010
Q ss_pred ----eeEEEEecccCCChhHHHHHHHHHHHHHHHhhhccCcccccccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007203 380 ----ASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLL 455 (613)
Q Consensus 380 ----~s~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~v~vv~~l 455 (613)
.-.+..... +..+..+..+.++++.++++ .|++....|.. ++...........++++++++++++.+
T Consensus 820 ng~~~v~v~~~~~---~~~~~~~~~~~v~~~~~~lP--~g~~~~~~G~~----~~~~~~~~~~~~~~~~ai~lv~lvL~~ 890 (1049)
T PRK15127 820 NGLPSMEILGQAA---PGKSTGEAMELMEELASKLP--TGVGYDWTGMS----YQERLSGNQAPALYAISLIVVFLCLAA 890 (1049)
T ss_pred CCceEEEEEEEeC---CCCCHHHHHHHHHHHHHhCC--CCcEEEeccHH----HHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 001111111 11234455566666655554 25555444431 222222233445567788899999999
Q ss_pred hhcCchhHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHHHHHHHh----cCCHHHHHHHHHHH
Q 007203 456 MTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVS----HGNRNQRSQKALST 531 (613)
Q Consensus 456 ~~~s~~~~~~~~l~i~~~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~~~~~~~----~~~~~~a~~~al~~ 531 (613)
+|+|++.++++++++++++++++..|+++|.++|..+++.+++.+|+.||++|++++.+++. ..++.+|+.+|.++
T Consensus 891 ~f~s~~~pliI~~~IPls~~Ga~~~l~~~g~~l~~~sl~Gli~l~GivV~naIvlvd~~~~~~~~~G~~~~~Ai~~a~~~ 970 (1049)
T PRK15127 891 LYESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLEAVRM 970 (1049)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHcCeEEEeHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999877542 24789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 007203 532 MGASVFSGITLTKLVGVIVLCFARS---EIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPS 593 (613)
Q Consensus 532 ~g~~v~~~~~ltt~~gf~~L~fs~~---~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~~~~~ 593 (613)
..+|+++++ +||++||+||++... ++++.+. ..++.++++|.+.+|+++|+++.++.+..
T Consensus 971 R~rPIlmTt-lTti~gllPl~l~~G~g~~~~~pla-i~ii~GL~~St~ltL~~vP~ly~~~~~~~ 1033 (1049)
T PRK15127 971 RLRPILMTS-LAFILGVMPLVISSGAGSGAQNAVG-TGVMGGMVTATVLAIFFVPVFFVVVRRRF 1033 (1049)
T ss_pred hhhhHHHHH-HHHHHHHHHHHhcCCCCHHHhcCch-hhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999998 799999999999864 3444442 23445688999999999999999986543
No 21
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=99.93 E-value=2e-24 Score=227.97 Aligned_cols=200 Identities=20% Similarity=0.330 Sum_probs=175.8
Q ss_pred ChhHHHHHHHHHHHHHHHhhhccCcccccccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHH
Q 007203 392 KQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLV 471 (613)
Q Consensus 392 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l~i~ 471 (613)
+.++..+.++++++..+++.+..|.+++.+|.+....|..+.+.++......++++++++++++++||++.++++++++.
T Consensus 99 ~~~~~~~~~~~i~~~i~~~~~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~~~~~l~~i~lvl~~~fRs~~~~l~~l~~~~ 178 (333)
T PF03176_consen 99 GSQEAQEAVKAIRDIIKEAEKPPGLKVYVTGSPAIAADIQEAIQHDLLRSGLLALLLIFLVLLLVFRSVRAALLPLLPVL 178 (333)
T ss_pred chhhHHHHHHHHHHHHHHhhccCCcEEEEECHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 34455677888888888877556889999999988888888888999999999999999999999999999999999999
Q ss_pred HHHHHHHHH----HHHhcccchhHH-HHHHHHHhHhcccchhHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHHHHH
Q 007203 472 MIVIDLLGV----MAILGIQLNAVS-VVNLIMSIGIAVEFCVHIVHAFLVSH---GNRNQRSQKALSTMGASVFSGITLT 543 (613)
Q Consensus 472 ~~~~~~~G~----m~~~gi~ln~~s-~~~~~i~iGl~VD~sih~~~~~~~~~---~~~~~a~~~al~~~g~~v~~~~~lt 543 (613)
+++++++|+ ++++|+++|..+ .+..++.+|+++||+||+.+||+++. ++++++++++++++|+|++.++ +|
T Consensus 179 ~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~lgvgidy~i~l~~r~ree~~~g~~~~~ai~~a~~~~g~~i~~s~-lt 257 (333)
T PF03176_consen 179 LSIVWTLGLVALLMGLLGIPLSWITPALVFVLLLGVGIDYSIHLINRYREELRRGMSRKEAIRRAVRSTGRAILLSA-LT 257 (333)
T ss_pred HHHHHHHHHHHHHHHhhccccceeehHhhhhhHHHhhhhhHHHHHHHHHHHHHhccchHHHHHHHHhccCchhHHHH-HH
Confidence 999999998 567788888755 45677899999999999999999984 4678999999999999999998 69
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 007203 544 KLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPS 593 (613)
Q Consensus 544 t~~gf~~L~fs~~~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~~~~~ 593 (613)
|++||..|.+++.++++.|+ .+..++++++++.+++++|+++.++++..
T Consensus 258 t~~gf~~L~~s~~~~~~~~G-~~~~~gi~~~~l~~l~llPall~~~~~~~ 306 (333)
T PF03176_consen 258 TAIGFGSLLFSPFPPLRQFG-LLAAIGILIALLLSLTLLPALLSLLGRWR 306 (333)
T ss_pred HHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 99999999999999999984 45556789999999999999999999874
No 22
>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=99.93 E-value=2.1e-23 Score=238.69 Aligned_cols=414 Identities=14% Similarity=0.148 Sum_probs=282.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhheeeeeccccHhHHHHHHHhc-CCCCCHHHHHHHHHhhhhhHHH
Q 007203 26 LGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSIT 104 (613)
Q Consensus 26 l~~~~l~~~~~a~~~~~Gl~~~~g~~~~~~~~~~~p~l~l~igvd~~~~l~~~~~~~-~~~~~~~~~i~~~l~~~g~~i~ 104 (613)
.++.++++..+++++++|++.++|.++|. .+...+.+++|+++||.+++.++++|+ +++.++++++.++.++.+.|++
T Consensus 290 ~~lia~ial~~~v~~~l~~l~l~g~~l~l-~siaglil~iGi~Vd~~Ivi~eri~e~l~~g~~~~~Ai~~a~~~~~~~il 368 (755)
T PRK13024 290 PGLIANIALLLYIFLTLGALSSLGAVLTL-PGIAGLVLGIGMAVDANVLIFERIKEELRKGKSLKKAFKKGFKNAFSTIL 368 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHHHhCcEEehHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 57788889999999999999999999997 777778888999999999999999876 4567899999999999999999
Q ss_pred HHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------c--------c---c-------CC
Q 007203 105 LASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHA------P--------I---L-------GL 160 (613)
Q Consensus 105 ~tslTt~~~F~~~~~s~ip~ir~Fgi~~aigv~~~~v~~lt~~pall~~~~------~--------~---l-------~~ 160 (613)
.|++||+++|+.+.+.+.+++|.|++..++|++++++.++++.|+++..+. + + . .+
T Consensus 369 ~t~lTTii~~lpL~~~g~g~~~~faitl~~Gli~s~~~sl~v~p~l~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~~~~~ 448 (755)
T PRK13024 369 DSNITTLIAAAILFFFGTGPVKGFATTLIIGILASLFTAVFLTRLLLELLVKRGDKKPFLFGVKKKKIHNINEGVTIFDR 448 (755)
T ss_pred HHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccchhhhhccccccccCcc
Confidence 999999999999998888899999999999999999999999999883210 0 0 0 00
Q ss_pred c---cchhhHHHHHHHHHHHHHHhhhcccccccccccCCCCchhhhHHHHHHHhhccCCCEEEEEecCCCCchhhhhhhh
Q 007203 161 W---GVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVKDYNYSSESRHTNQL 237 (613)
Q Consensus 161 ~---~~k~~vl~~~~~l~~~si~g~~~l~~~~~~~~~~p~ds~~~~~~~~~~~~f~~~~~~~iv~~~~d~~~~~~~~~~~ 237 (613)
. ..|....++.++++++|+.+.... |++. .=.|.|+..+.+-.++ + .+.
T Consensus 449 ~df~~~rk~~~~iS~ili~~~l~~~~~~--Gln~-----------------giDF~GG~~~~v~~~~-~-~~~------- 500 (755)
T PRK13024 449 IDFVKKRKWFLIFSIVLVIAGIIIFFIF--GLNL-----------------GIDFTGGTRYEIRTDQ-P-VDL------- 500 (755)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhc--Cccc-----------------ccccCCcEEEEEEcCC-C-CCH-------
Confidence 0 012233455555666666655321 1110 0025566544443221 0 010
Q ss_pred hcccccCchhhHHHHHHhccCCCCccccCCCCchHHHHHhhcCCCcccccccccCCccCCCCCCCCCCCCCCCCCCCCCc
Q 007203 238 CSISQCDSNSLLNEISRASSIPELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGV 317 (613)
Q Consensus 238 ~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~wl~~f~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (613)
+++.+.+++. .++ +. . .
T Consensus 501 --------~~vr~~l~~~-~~~--------------------------------~~-~----v----------------- 517 (755)
T PRK13024 501 --------EQVRADLKEL-GLG--------------------------------EV-N----I----------------- 517 (755)
T ss_pred --------HHHHHHHHhc-CCC--------------------------------Cc-e----E-----------------
Confidence 0111111100 000 00 0 0
Q ss_pred ccCCCcccccCCCCCCCCChhHHHhhhHHHHhhCCCccccCCCCCcccccccccCCCCCeEEeeEEEEecccCCChh-HH
Q 007203 318 CKDCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQG-DY 396 (613)
Q Consensus 318 ~~~~~~~~~~~~~~~~~p~~~~f~~~l~~~l~~~p~~~~~~~~~~~y~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~-~~ 396 (613)
.. + . ++...+ ++++. ....+.+ ..
T Consensus 518 --------------------~~-------~----~------~~~~~~-----------------~i~~~-~~~~~~~~~~ 542 (755)
T PRK13024 518 --------------------VT-------F----G------SDNNQV-----------------LVRTY-GILSDDEEAD 542 (755)
T ss_pred --------------------EE-------e----c------CCCcEE-----------------EEEEc-CCCCcchhhh
Confidence 00 0 0 000000 00110 0000000 01
Q ss_pred HHHHHHHHHHHH-HhhhccCcccccccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHH
Q 007203 397 VNSLRAAREFSS-RMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVI 475 (613)
Q Consensus 397 ~~~i~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l~i~~~~~ 475 (613)
.+..+++++-.+ +++.+ ..+....|. ..-.++.+..+..++++++++++.+++-| +|+.++.++++++.-++
T Consensus 543 ~~~~~~l~~~~~~~~~~~-~~~~~~Vgp-----~~g~~~~~~~~~a~~~a~~~i~iyi~~rF-~~~~~~~aiial~~dvi 615 (755)
T PRK13024 543 TEIVAKLKNALKNDKGGT-IPSSETVGP-----TVGKELARNAIIAVLIALIGILLYILIRF-EWTFSLGAILALLHDVL 615 (755)
T ss_pred HHHHHHHHHHhhhhcccc-eeEEEEECH-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 122222222221 11100 011111222 22334566677788888888888887777 78889999999999999
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007203 476 DLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVSH-----GNRNQRSQKALSTMGASVFSGITLTKLVGVIV 550 (613)
Q Consensus 476 ~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~~~~~~~~-----~~~~~a~~~al~~~g~~v~~~~~ltt~~gf~~ 550 (613)
.++|+|.++|+++|..++..+++.+|.++|++|++.+|++|+. ++.++.+.+++.+++...+.++ +||++++++
T Consensus 616 i~~g~~~l~~~~~~~~~iaall~iiGysvndtIvi~dRirE~~~~~~~~~~~~~v~~si~~tl~rti~ts-~tt~~~~~~ 694 (755)
T PRK13024 616 IVIGFFSLFRLEVDLTFIAAILTIIGYSINDTVVVFDRIRENLRLYKKKDLREIVNKSINQTLSRTINTS-LTTLLVLLA 694 (755)
T ss_pred HHHHHHHHhcceEcHHHHHHHHHHHhheeeceEEEEhHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 9999999999999999999999999999999999999999973 3567899999999999999998 699999999
Q ss_pred HhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcc
Q 007203 551 LCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPSRH 595 (613)
Q Consensus 551 L~fs~~~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~~~~~~~ 595 (613)
|.+...+.++.|...+ +++++++...++++.+.++.++..++++
T Consensus 695 L~~~g~~~i~~fa~~l-~iGii~g~~ssifia~~l~~~~~~~~~~ 738 (755)
T PRK13024 695 LLIFGGSSLRNFSLAL-LVGLIVGTYSSIFIAAPLWLDLEKRRLK 738 (755)
T ss_pred HHHhcCchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 9999989999986544 4568899999998877777666544333
No 23
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=99.92 E-value=5e-23 Score=246.68 Aligned_cols=533 Identities=17% Similarity=0.191 Sum_probs=313.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhheeeeeccccHhHHHHHHHhc-CC-CCCHHHHHHHHHhhhhhHHH
Q 007203 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PM-ELVLETRISNALVEVGPSIT 104 (613)
Q Consensus 27 ~~~~l~~~~~a~~~~~Gl~~~~g~~~~~~~~~~~p~l~l~igvd~~~~l~~~~~~~-~~-~~~~~~~i~~~l~~~g~~i~ 104 (613)
++...+++.+|++.++.+|.++|+++|. ++..--.+.+|+=+||+++++++.+++ .+ +.++.++..++.++.+.|++
T Consensus 358 ~liv~~~IPisi~~t~~~m~~~g~slN~-~SL~gl~laiG~lVDdaIVV~Eni~r~~~~~g~~~~~Aa~~~~~ev~~~i~ 436 (1021)
T PF00873_consen 358 ALIVALSIPISILGTFIFMYLFGISLNI-MSLAGLILAIGMLVDDAIVVVENIYRHLEEEGKSPLEAAIEGTKEVAPPIL 436 (1021)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTBEH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCchH-HHHHhHHHhcccccccceehHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 5667788899999999999999999997 444433333444489999999887654 44 88999999999999999999
Q ss_pred HHHHHHHHHHHhhcccC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------------c
Q 007203 105 LASLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIEV---------------------------H 154 (613)
Q Consensus 105 ~tslTt~~~F~~~~~s~---ip~ir~Fgi~~aigv~~~~v~~lt~~pall~~---------------------------~ 154 (613)
.+++||+++|+-+.+.+ -.-++.|++..+++++++++.++++.|++..+ |
T Consensus 437 ~stlTti~vF~Pl~f~~G~~g~~~~~l~~~v~~al~~Sllval~~~P~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~Y 516 (1021)
T PF00873_consen 437 ASTLTTIAVFLPLLFMPGIAGQFFRPLALTVIIALIASLLVALTLVPALAALFLKPKKKSSKKRFFSKFDRFFDRLQRGY 516 (1021)
T ss_dssp HHHHHHHHHTCGGGGSBHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHCS----TT-CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccccccccccccccch
Confidence 99999999999988775 34789999999999999999999999988731 1
Q ss_pred ccccCCc-cchhhHHHHHHHHHHHHHHhhhcccccccccc---------cCCCCchhhhHHHH---HHHhhccCCCEEEE
Q 007203 155 APILGLW-GVKMVVVSVFLAFTVASIALSTRIEAGLEQQI---------VLPRDSYLQGYFDN---TTEYLRVGPPLYFV 221 (613)
Q Consensus 155 ~~~l~~~-~~k~~vl~~~~~l~~~si~g~~~l~~~~~~~~---------~~p~ds~~~~~~~~---~~~~f~~~~~~~iv 221 (613)
.+.+.+. .+|..++++++++++++++...+++.++=|.. -+|+++++.+..+. +++.....+.+.-+
T Consensus 517 ~~lL~~~L~~~~~~l~i~l~l~i~s~~l~~~l~~ef~P~~d~~~~~v~v~lp~Gtsle~t~~~~~~ve~~L~~~p~V~~v 596 (1021)
T PF00873_consen 517 RRLLRWALRHPKLVLLIALLLLILSLFLFPFLPKEFFPPSDRGEFYVSVELPPGTSLEETDAIVKQVEDILKEDPEVKSV 596 (1021)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHHHHHCTSEBESS----TSEEEEEEEESTTC-HHHHHHHHHHHHHHHHTTTTEEEE
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhhcccccCCcccCCcccCCceEEEEeeccCchHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 1111100 12445566667777778888888776665533 57888888777554 45555433333322
Q ss_pred Ee--cCCCCchhhhhhh--h-hcc---c-----ccCchhhHHHHHH-hccCCCCccc-----------------------
Q 007203 222 VK--DYNYSSESRHTNQ--L-CSI---S-----QCDSNSLLNEISR-ASSIPELSYI----------------------- 264 (613)
Q Consensus 222 ~~--~~d~~~~~~~~~~--~-~~~---~-----~~~~~~l~~~i~~-~~~~~~~~~~----------------------- 264 (613)
.. +.+........+. . ..+ . .....++.+++++ ++++++..+.
T Consensus 597 ~s~vG~~~~~~~~~~~~~~~~i~L~~~~~r~~~~~~~~~l~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~v~ 676 (1021)
T PF00873_consen 597 SSRVGRGFSGFNAGPNSASIFINLKPKSERPGSKESIDELIDELRQKLKQLPGARVFVFSPPDLRGLGSGPGSSAPIQVE 676 (1021)
T ss_dssp EEEESECSST--ECTTEEEEEEEE--CTCS-SCCCSHHHHHHHHHHHCCTSTSSEEEEEEHCSSCCCCSSSSEEEEEEEE
T ss_pred ceEeccccccccCCCcceEEEEEEeecccccccchhHHHHHHHHHHhhhhCCCcceeccccccccccccccccceeeeec
Confidence 21 1110000000000 0 000 0 1112344555543 2344432210
Q ss_pred -cCCCC----chHHHHHhhcCCCcccccccccCCccCCCCCCCCCC-CCCCCCCCCCCcccCCCcccccCCCCCCCCChh
Q 007203 265 -AKPAA----SWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCC-SPDEEPCGVNGVCKDCTTCFRHSDLVNNRPSTE 338 (613)
Q Consensus 265 -~~~~~----~wl~~f~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 338 (613)
.++.. .|-++..+.+++.+. .. ....++ .+.++.+. -+|++....+ +. +.+
T Consensus 677 i~G~d~~~L~~~a~~v~~~l~~~pg--v~-dv~~~~--~~~~~el~i~~dreka~~~-----------------Gl-s~~ 733 (1021)
T PF00873_consen 677 IYGDDLEELRKAAEKVKAKLAEIPG--VT-DVRDDW--EDGQPELRIDPDREKAARL-----------------GL-SPA 733 (1021)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHHSTT--EE-EEEESS--SSBEEEEEEEE-HHHHHHT-----------------TB--HH
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCCC--cc-cccccc--cccCcceEEEecHHHHHHc-----------------CC-CHH
Confidence 00000 122222222211100 00 000000 00000000 0000000000 00 123
Q ss_pred HHHhhhHHHHhhCCCccccCCCC---------Cccccc------ccccCCCCCeEEeeE----------EEEeccc----
Q 007203 339 QFREKLPWFLNALPSADCAKGGH---------GAYSTS------VDLNGYESGIIQASE----------FRTFHTP---- 389 (613)
Q Consensus 339 ~f~~~l~~~l~~~p~~~~~~~~~---------~~y~~~------~~~~~~~~~~i~~s~----------~~~~~~~---- 389 (613)
+..+.++..++..+...-..++. +.+..+ +.+...+...++-+. -.+.+.|
T Consensus 734 ~va~~l~~a~~G~~v~~~~~~~~~~~I~vr~~~~~r~~~~~L~~l~i~~~~G~~VpL~~la~i~~~~~~~~I~r~n~~r~ 813 (1021)
T PF00873_consen 734 DVARTLRTAFSGSVVGTFREGGEEIDIRVRLPEEDRQSLEDLENLPIPTPDGRSVPLSQLATIEETQGPSQIRRENGQRT 813 (1021)
T ss_dssp HHHHHHHHHHS-EEEEEEEETTEEEEEEEEE-GGGSSSGGGGCT-EEEETTSEEEEGGGTEEEEEEEE-SEEEEETTCEE
T ss_pred HHHHHHHHHhcccccceeeeCCeEEEEEEecchhhccChhhhcceEEEeeccccccHHHHhccccccccceEecccCcee
Confidence 33344433332211000000000 000000 000000000111000 0111111
Q ss_pred ------CCChhHHHHHHHHHHHHHHHhhhccCcccccccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhH
Q 007203 390 ------LNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSS 463 (613)
Q Consensus 390 ------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~ 463 (613)
..+.....+..+.+++..++..-..|++....|. .++..+...++...++++++++++++.+.|+|++..
T Consensus 814 itV~a~~~~~~~~~~v~~~~~~~~~~~~lp~g~~~~~~G~----~~~~~e~~~~l~~~~~~al~liyliL~~~F~S~~~P 889 (1021)
T PF00873_consen 814 ITVSADVAGGDSLGEVSEAVKELLKELQLPPGYTIEFGGE----AEEMQESFSSLGFALILALLLIYLILAAQFESFRQP 889 (1021)
T ss_dssp EEEEEEESSSSHHHHHHHHHHHHHTTT-SSTTEEEEEECH----HHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTSSSTH
T ss_pred eeeccccccCccchhHHHHHHhhhccccCCCCCcccCCch----HHHHHhhhcchhhhHHHHHHHHHHHHHHHhcceeee
Confidence 1111112233344444444422112444433343 344555667888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHHHHHHHhc---C-CHHHHHHHHHHHHHHHHHHH
Q 007203 464 AIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVSH---G-NRNQRSQKALSTMGASVFSG 539 (613)
Q Consensus 464 ~~~~l~i~~~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~~~~~~~~---~-~~~~a~~~al~~~g~~v~~~ 539 (613)
+++++++++++++.+-.+.+.|.++|..+++.+++.+|+.|.++|-+++.+++.+ | +..+|+.+|.++..+||+++
T Consensus 890 liIm~~IPla~~G~~~~l~i~g~~l~~~s~iG~i~L~GIvVnNaIllvd~~~~~~~~~g~~~~eAi~~a~~~RlRPIlmT 969 (1021)
T PF00873_consen 890 LIIMLTIPLALIGVLLGLFITGQPLSFMSLIGIIALIGIVVNNAILLVDFINELRKREGMPLEEAIIEAARSRLRPILMT 969 (1021)
T ss_dssp HHHHTTHHHHHHHHHHHHHHTTBEBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccchhhHHHHHHHhhccccccccceehHHHHHHHHHhhhHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998776642 2 57899999999999999999
Q ss_pred HHHHHHHHHHHHhhccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007203 540 ITLTKLVGVIVLCFARS---EIFVVYYFQMYLALVIIGFLHGLVFLPVILSLF 589 (613)
Q Consensus 540 ~~ltt~~gf~~L~fs~~---~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~ 589 (613)
+ +||++|++||+++.. .+.+.+. ..+++++++|.+.+|+++|+++.++
T Consensus 970 t-lTti~G~lPla~~~g~g~~~~~pla-~~iigGL~~stllTL~vvP~ly~l~ 1020 (1021)
T PF00873_consen 970 T-LTTILGMLPLALGIGEGAEFWQPLA-IVIIGGLLFSTLLTLIVVPVLYSLF 1020 (1021)
T ss_dssp H-HHHHHHHHHHHTT-STTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-hhhhccccccccccCCCccccCchh-hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8 799999999999865 3444442 2334567888999999999999876
No 24
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Probab=99.92 E-value=1e-22 Score=239.76 Aligned_cols=195 Identities=17% Similarity=0.192 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHHHhhh--ccCcccccccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHH
Q 007203 396 YVNSLRAAREFSSRMSD--TLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMI 473 (613)
Q Consensus 396 ~~~~i~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l~i~~~ 473 (613)
..+.++++|+..++.+. ..|+++..+|.+.+..+......++......++++++++++++++||++.+++++++++++
T Consensus 227 ~~~~~~~i~~~~~~~~~~~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~~~~a~~lv~llL~l~frs~~~~l~~l~~i~~s 306 (862)
T TIGR03480 227 AEKAINAIRAAAKDLRLDEDHGVTVRLTGEVALSDEELATVSEGATVAGLLSFVLVLVLLWLALRSPRLVFAVLVTLIVG 306 (862)
T ss_pred hHHHHHHHHHHHHhcccCCCCCCEEEEeCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34567777777775432 2478888888876667777888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007203 474 VIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVSH---GNRNQRSQKALSTMGASVFSGITLTKLVGVIV 550 (613)
Q Consensus 474 ~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~~~~~~~~---~~~~~a~~~al~~~g~~v~~~~~ltt~~gf~~ 550 (613)
+++++|+|+++|.++|.+|++..++.+|++|||+||+++||+++. ++++++++++++++|+|++.++ +||++||+.
T Consensus 307 ~~~~~~~~~l~~~~ln~~s~~~~~lliGi~vD~~I~~~~r~~e~~~~g~~~~~A~~~a~~~~~~~i~~s~-lTt~~gf~~ 385 (862)
T TIGR03480 307 LILTAAFATLAVGHLNLISVAFAVLFIGLGVDFAIQFSLRYREERFRGGNHREALSVAARRMGAALLLAA-LATAAGFFA 385 (862)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 999999999999999999999999999999999999999999863 4788999999999999999998 799999999
Q ss_pred HhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 007203 551 LCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPP 592 (613)
Q Consensus 551 L~fs~~~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~~~~ 592 (613)
+.+++.+.++.++ .+..++++++++.+++++|+++.+++|+
T Consensus 386 l~~~~~~~~~~lg-~~~~~gv~~s~l~~l~llP~l~~~~~~~ 426 (862)
T TIGR03480 386 FLPTDYKGVSELG-IIAGTGMFIALFVTLTVLPALLRLLRPP 426 (862)
T ss_pred HHHcccHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 9999998888874 3445568889999999999999998554
No 25
>PF12349 Sterol-sensing: Sterol-sensing domain of SREBP cleavage-activation
Probab=99.91 E-value=2.1e-24 Score=200.80 Aligned_cols=134 Identities=51% Similarity=0.826 Sum_probs=129.8
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhheeeeeccccHhHHHHHHHhcCCCCCHHHHHHHHHhh
Q 007203 19 YVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVE 98 (613)
Q Consensus 19 ~v~s~~~l~~~~l~~~~~a~~~~~Gl~~~~g~~~~~~~~~~~p~l~l~igvd~~~~l~~~~~~~~~~~~~~~~i~~~l~~ 98 (613)
|||||.||++.+++++.+|+++++|++.++|.+++++...++||+++++|+||++++.++|++..++.++++|+.+++++
T Consensus 1 ~v~S~~~L~~~~i~~v~~s~~~a~~i~~~~g~~~~~~~~e~~PFlvl~iG~dn~f~l~~~~~~~~~~~~~~~ri~~al~~ 80 (153)
T PF12349_consen 1 MVGSRFWLGLAGIVSVAFSVLFALGICSLFGVPFSLIPSEVLPFLVLGIGVDNMFVLARAVRRTPSSLPVPERIAEALSR 80 (153)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 68999999999999999999999999999999999966669999999999999999999999998888889999999999
Q ss_pred hhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007203 99 VGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (613)
Q Consensus 99 ~g~~i~~tslTt~~~F~~~~~s~ip~ir~Fgi~~aigv~~~~v~~lt~~pall~ 152 (613)
+|++++.|++|++++|+.+..+++|++|+||+++++++++++++++|+|||++.
T Consensus 81 ~G~si~~t~l~~~~af~~~~~~~~~~l~~Fc~faa~~l~~d~~l~~tff~avLs 134 (153)
T PF12349_consen 81 VGPSILLTSLTEIVAFLIGAFSPVPALREFCLFAALALLFDFLLQLTFFPAVLS 134 (153)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999994
No 26
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional
Probab=99.90 E-value=4.3e-20 Score=210.77 Aligned_cols=409 Identities=17% Similarity=0.207 Sum_probs=267.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhheeeeeccccHhHHHHHHHhc-CCCCCHHHHHHHHHhhhhhHHH
Q 007203 26 LGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSIT 104 (613)
Q Consensus 26 l~~~~l~~~~~a~~~~~Gl~~~~g~~~~~~~~~~~p~l~l~igvd~~~~l~~~~~~~-~~~~~~~~~i~~~l~~~g~~i~ 104 (613)
.++...+...+++++++|++.++|.++|. ....--.+.+|+++|+.+++.++.+|+ +++.++.+++..+.++++.+++
T Consensus 396 ~glia~ial~~~vl~~l~~l~l~g~tLnl-~~IaGiil~IGm~VD~~IVI~ErIreel~~G~s~~~Ai~~g~~~a~~~Il 474 (855)
T PRK14726 396 LGVIAVIALIVNVVLIIAVLSLLGATLTL-PGIAGIVLTIGMAVDSNVLIYERIREEEKTGHSLIQALDRGFSRALATIV 474 (855)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcceeH-HHHHHHHHHHHhhhCceEEeHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 57788888899999999999999999997 665556677788899999999999886 4567899999999999999999
Q ss_pred HHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------c------ccCCc-----cchh
Q 007203 105 LASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHA--------P------ILGLW-----GVKM 165 (613)
Q Consensus 105 ~tslTt~~~F~~~~~s~ip~ir~Fgi~~aigv~~~~v~~lt~~pall~~~~--------~------~l~~~-----~~k~ 165 (613)
.+++||+++|+.+.+.+..++|.|++..++|++.+++.++++.|+++..+. + +..++ ..|.
T Consensus 475 ~s~lTTlia~lpL~~~g~~~ikgFAvtl~igii~Sl~~Al~vtp~l~~~~l~~~~~~~l~~~~~~~~~~~~~~dfv~~rk 554 (855)
T PRK14726 475 DANVTILIAAVILFFLGSGAVRGFAVTLAVGILTTVFTAFTLTRSLVAVWLRRRRPKHLPKGVRTGLFEGANIRFMGIRR 554 (855)
T ss_pred HHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccchhhhhccccCCccchhhhHH
Confidence 999999999999999988999999999999999999999999999874210 0 10000 0122
Q ss_pred hHHHHHHHHHHHHHHhhhcccccccccccCCCCchhhhHHHHHHHhhccCCCEEEEEecCCCCchhhhhhhhhcccccCc
Q 007203 166 VVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVKDYNYSSESRHTNQLCSISQCDS 245 (613)
Q Consensus 166 ~vl~~~~~l~~~si~g~~~l~~~~~~~~~~p~ds~~~~~~~~~~~~f~~~~~~~iv~~~~d~~~~~~~~~~~~~~~~~~~ 245 (613)
...++.++++++|+.+... .|+|. + =.|.|+..+.+-.+..+....
T Consensus 555 ~~~~iS~ili~~si~~~~~--~Gln~------G-----------IDFtGGt~i~v~~~~~~~~~~--------------- 600 (855)
T PRK14726 555 YVFTLSAALSLASLVLFAT--VGLNL------G-----------IDFTGGSLIEVRAKQGNADIA--------------- 600 (855)
T ss_pred HHHHHHHHHHHHHHHHHHh--cCCcC------c-----------eEecCceEEEEEecCCCCCHH---------------
Confidence 2234444455555554321 12111 0 024455433332211111100
Q ss_pred hhhHHHHHHhccCCCCccccCCCCchHHHHHhhcCCCcccccccccCCccCCCCCCCCCCCCCCCCCCCCCcccCCCccc
Q 007203 246 NSLLNEISRASSIPELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVCKDCTTCF 325 (613)
Q Consensus 246 ~~l~~~i~~~~~~~~~~~~~~~~~~wl~~f~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (613)
+..+.+++. .++ +.. ... + +
T Consensus 601 -~vr~~l~~~-~~~-------~~~---------------------vq~-~---~-------------------------- 620 (855)
T PRK14726 601 -DIRARLNEL-NLG-------EVQ---------------------VER-F---G-------------------------- 620 (855)
T ss_pred -HHHHHHHhc-CCC-------Cce---------------------EEE-e---c--------------------------
Confidence 011111110 000 000 000 0 0
Q ss_pred ccCCCCCCCCChhHHHhhhHHHHhhCCCccccCCCCCcccccccccCCCCCeEEeeEEEEecccCCChhHHHHHHHHHHH
Q 007203 326 RHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAARE 405 (613)
Q Consensus 326 ~~~~~~~~~p~~~~f~~~l~~~l~~~p~~~~~~~~~~~y~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~i~~~~~ 405 (613)
.+ .+ + .+++.... .+.++..+..+.+++
T Consensus 621 --------~~--~~------------------------~-----------------~ir~~~~~-~~~~~~~~~~~~l~~ 648 (855)
T PRK14726 621 --------SP--RD------------------------A-----------------LIRIASQD-GGENAEQSAVTLVRG 648 (855)
T ss_pred --------CC--ce------------------------E-----------------EEEEccCC-ccchhhHHHHHHHHH
Confidence 00 00 0 00000000 000000111222211
Q ss_pred HHHHhhhccCc-ccccccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHh
Q 007203 406 FSSRMSDTLKI-NIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAIL 484 (613)
Q Consensus 406 ~~~~~~~~~~~-~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l~i~~~~~~~~G~m~~~ 484 (613)
.+.++.+. +....|.. .-.++.+..+..++++++++++-+.+-| .|+.++.+++++..=+++++|+|.++
T Consensus 649 ---~l~~~~~~~~~~~VGp~-----vG~el~~~ai~Al~iAli~IliYI~~RF-~~~fa~~avial~hDv~i~~g~~~l~ 719 (855)
T PRK14726 649 ---ELEDDYDFRRVEVVGPA-----VSGELTMAATLGVLAALAAILIYIWIRF-EWQFAVGAIIATLHDVILTLGLFVLT 719 (855)
T ss_pred ---hhhcccccceeeeeCcc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 11112221 1234455667777777777766555555 58888888999988999999999999
Q ss_pred cccchhHHHHHHHHHhHhcccchhHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhH
Q 007203 485 GIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVSHG-----NRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIF 559 (613)
Q Consensus 485 gi~ln~~s~~~~~i~iGl~VD~sih~~~~~~~~~~-----~~~~a~~~al~~~g~~v~~~~~ltt~~gf~~L~fs~~~~~ 559 (613)
|+++|..++..+++.+|.+++++|++.+|++|+.+ +..+.+..++.++...++.++ +||++|+++|++...+..
T Consensus 720 g~~ls~~~iaglLtliGysvndtIVi~DRIrE~~~~~~~~~~~~~~~~si~~tl~Rii~Ts-lTTll~llpL~l~G~~~i 798 (855)
T PRK14726 720 GIEFNLTSIAAILTIVGYSLNDTVVVYDRVRENLRRYKKMPLPILIDASINQTLSRTVLTS-ATTLLALLALYLFGGEVI 798 (855)
T ss_pred CCCccHHHHHHHHHHHHHeeeCcEEEehHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcchhH
Confidence 99999999999999999999999999999987641 334567777777777788988 699999999999887888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 007203 560 VVYYFQMYLALVIIGFLHGLVFLPVILSLFGPP 592 (613)
Q Consensus 560 ~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~~~~ 592 (613)
+.|.. .+++++++|.+.++++-+.++.+++.+
T Consensus 799 ~~fai-~li~Gli~gt~sSifvAspll~~~~~~ 830 (855)
T PRK14726 799 RSFTF-AMLFGVAVGTFSSIYIAAPVLIVFKLR 830 (855)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 88754 344568899999999998888888543
No 27
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=99.89 E-value=1.5e-21 Score=228.06 Aligned_cols=524 Identities=17% Similarity=0.194 Sum_probs=318.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhheeeeeccccHhHHHHHHHhcCCCCCHHHHHHHHHhhhhhHHHHH
Q 007203 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLA 106 (613)
Q Consensus 27 ~~~~l~~~~~a~~~~~Gl~~~~g~~~~~~~~~~~p~l~l~igvd~~~~l~~~~~~~~~~~~~~~~i~~~l~~~g~~i~~t 106 (613)
++.+.+++.+|++.||++|.++|+++|. ++...-.|-+|+=+||+++.++..+++.++.++.|+..++++|.+-|++-+
T Consensus 356 tlI~~iaiPlsLlgtf~~m~~~GfslN~-lTL~aLiLAiGllVDDAIVVvENI~R~~~G~~p~~Aa~~a~~ei~~~via~ 434 (1009)
T COG0841 356 TLIPALAVPVSLLGTFAVMYAFGFSLNT-LTLFALVLAIGLLVDDAIVVVENIERHMRGLPPREAAEKAMGEIGGAVIAI 434 (1009)
T ss_pred eEEeeeechHHHHHHHHHHHHhCccchH-hHHHHHHHhhheeEeccEEEEeeEEeecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3556678889999999999999999997 555555555666689999999887665449999999999999999999999
Q ss_pred HHHHHHHHHhhcccC-ch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------------------c---
Q 007203 107 SLSEFLAFAVGSFIP-MP--ACRVFSMFAALAVLLDFFLQVTAFVALIEVH-------------------------A--- 155 (613)
Q Consensus 107 slTt~~~F~~~~~s~-ip--~ir~Fgi~~aigv~~~~v~~lt~~pall~~~-------------------------~--- 155 (613)
++|++++|+-..+.+ +. -+|+|++..+++++++++.++|+-|.+..++ .
T Consensus 435 TlvliaVF~Pi~f~~G~~G~~f~~f~~tia~a~~~S~~vAltltP~L~a~lLk~~~~~~~~~~~~~~~~~~~~~~Y~~~l 514 (1009)
T COG0841 435 TLVLIAVFLPMAFMGGSTGELFRQFAITIAVAMLLSLLVALTLTPALCARLLKPVPPPKGFFGWFNRFFDRLEDRYQRGL 514 (1009)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchhhhhhhhhhHHHHHHHHHH
Confidence 999999999877654 33 7899999999999999999999999888321 0
Q ss_pred cccCCccchhhHHHHHHHHHHHHHHhhhcccccccccc---------cCCCCchhhhHHHH---HHHhhcc--CCCEEEE
Q 007203 156 PILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQI---------VLPRDSYLQGYFDN---TTEYLRV--GPPLYFV 221 (613)
Q Consensus 156 ~~l~~~~~k~~vl~~~~~l~~~si~g~~~l~~~~~~~~---------~~p~ds~~~~~~~~---~~~~f~~--~~~~~iv 221 (613)
.++.+| |+.++++++++.+.++|+...++.++=|.+ ..|+++.+.+..+. +++++.. .+.+.-+
T Consensus 515 ~~~L~~--~~~~~~~~l~~~~~~~~l~~~vp~~F~P~eD~g~~~v~~~~p~g~sl~~t~~~~~~ve~~~~~~~~~~v~~v 592 (1009)
T COG0841 515 RWVLRR--RALVLLLYLVLLGGSVLLFLKLPKSFLPEEDQGEFMVQVQLPEGASLERTAEVVRQVEDWLLILEKPEVESV 592 (1009)
T ss_pred HHHHhh--HHHHHHHHHHHHHHHHHHHHhCCCccCCcCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeeEE
Confidence 011222 566777888888889999999999888755 67888877666544 3444311 1222211
Q ss_pred Ee--cC----C--------CCchhhhhhhhhcccccCchhhHHHHH-HhccCCCC-cc------cc--------------
Q 007203 222 VK--DY----N--------YSSESRHTNQLCSISQCDSNSLLNEIS-RASSIPEL-SY------IA-------------- 265 (613)
Q Consensus 222 ~~--~~----d--------~~~~~~~~~~~~~~~~~~~~~l~~~i~-~~~~~~~~-~~------~~-------------- 265 (613)
.. +. + +.+..++. ..+..+..+++. ++.++++. .+ +.
T Consensus 593 ~~~~G~g~~~~~~~~~~~~Lk~~~er~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 665 (1009)
T COG0841 593 FTVVGFGSGQNNAGRAFVSLKPWSERK-------ENSAQAIIARLTKELAKIPDATVFAFTPPAVDGLGQGSGFPFQLRD 665 (1009)
T ss_pred EEEeccCCCCCCcceEEEecCChhhcc-------cccHHHHHHHHHHHhhcCCccceeccCCCccccCCCCCCccEEEEE
Confidence 11 11 0 00000000 001111222221 12222110 00 00
Q ss_pred -CCC----CchHHHHHhhcCCCcccccccccCCccCCCCCCCCC-CCCCCCCCCCCCcccCCCcccccCCCCCCCCChhH
Q 007203 266 -KPA----ASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPC-CSPDEEPCGVNGVCKDCTTCFRHSDLVNNRPSTEQ 339 (613)
Q Consensus 266 -~~~----~~wl~~f~~~~~~~~~~~~~~~~n~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 339 (613)
.+. ..|.++..+.+++.+. ...+.++ .++.|.+ ...|+++....++. .++
T Consensus 666 ~g~d~~~l~~~a~~~~~~~~~~p~----~~v~~~~--~~~~p~l~i~iDr~ka~~lGvs------------------~~~ 721 (1009)
T COG0841 666 RGGDLEALRQAANQLLEKANQSPL----LNVRSDL--LPDTPQLQVDIDRDKAAALGVS------------------LQD 721 (1009)
T ss_pred eCCCHHHHHHHHHHHHHHHhhCCC----ccccCCC--CCCCceEEEEeCHHHHHHcCCC------------------HHH
Confidence 000 1233333333332110 0011111 1111111 11122221111111 111
Q ss_pred HHhhhHHHHhhCCCccc-------------------------------cCCCCCccccccccc-CCCCCeEE-eeEEE-E
Q 007203 340 FREKLPWFLNALPSADC-------------------------------AKGGHGAYSTSVDLN-GYESGIIQ-ASEFR-T 385 (613)
Q Consensus 340 f~~~l~~~l~~~p~~~~-------------------------------~~~~~~~y~~~~~~~-~~~~~~i~-~s~~~-~ 385 (613)
..+.+...+...+-.+- .+|+.-+.++-.+.. ......|. ..+.. +
T Consensus 722 I~~tL~~~~~g~~v~~~~~~~~~~~V~~~~~~~~R~~~~~l~~l~v~~~~G~~vpLs~va~~~~~~~p~~i~r~n~~~sv 801 (1009)
T COG0841 722 IAQTLQSALGGTYVNDFRDDGRVYKVVVQADAEFRSDPEDLGKLYVRSADGAMVPLSAFATIRWEYGPPRIVRYNGLPSV 801 (1009)
T ss_pred HHHHHHHHhCCCeeeeEecCCcEEEEEEEcChhhcCCHHHHhceEEecCCCCEEechheEEEEEecCCCeEEeeCCceEE
Confidence 11111111110000000 001000000000000 00000010 00010 0
Q ss_pred -ecccCCChhHHHHHHHHHHHHHHHhhhccCcccccccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHH
Q 007203 386 -FHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSA 464 (613)
Q Consensus 386 -~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~ 464 (613)
...+........++++++++..++...+.|+..-..|. .++..+...+....+.++++++++++...|.||+..+
T Consensus 802 ti~~~~~~g~s~g~a~~~v~~~~~~~~lp~g~~~~~~G~----~~~~~~s~~~~~~~~~lai~~v~lvL~~qfeS~~~P~ 877 (1009)
T COG0841 802 TISGNLAPGVSSGDAMAAMEKLAAELPLPSGYTYEWSGE----SEQEKEAGGQALLLFALALLVVFLVLAAQYESFSIPF 877 (1009)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHhccCCCCceEEEecch----HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 00111111233455555555554432222554444443 3555556677888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHHHHH
Q 007203 465 IILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVS---HGNRNQRSQKALSTMGASVFSGIT 541 (613)
Q Consensus 465 ~~~l~i~~~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~~~~~~~---~~~~~~a~~~al~~~g~~v~~~~~ 541 (613)
.+++++++++++.+..+.+.|.++|..+.+.+++.+|+.+-++|-+++...+. ..++.||+.+|-+...+||++++
T Consensus 878 ~Il~tvPla~iGa~~~L~l~g~~~~i~a~IGli~LiGiv~KNaIllVefa~~~~~~G~~~~eAiieA~~~RlRPIlMTt- 956 (1009)
T COG0841 878 IVMLTVPLGLLGALLALLLTGLPLDVYAQIGLITLIGLVAKNAILIVEFANELRAEGLSLREAILEAARLRLRPILMTS- 956 (1009)
T ss_pred HHHhhhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCcEEEEhHHHHHHHcCCCHHHHHHHHhhhhhhhHHHHH-
Confidence 99999999999999999999999999999999999999999999998765543 34899999999999999999998
Q ss_pred HHHHHHHHHHhhccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 007203 542 LTKLVGVIVLCFARSE---IFVVYYFQMYLALVIIGFLHGLVFLPVILSLFG 590 (613)
Q Consensus 542 ltt~~gf~~L~fs~~~---~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~~ 590 (613)
+|+++|++||+++.+. .-+..+ ..++.++++|-+.+|+++|++..++.
T Consensus 957 la~ilG~iPLal~~g~Ga~~r~~lg-i~vigGl~~sT~LtL~~vPv~Y~~~~ 1007 (1009)
T COG0841 957 LAAILGVLPLALSTGAGAESRQPLG-IAVVGGLLVATVLTLFVVPVFYVLVE 1007 (1009)
T ss_pred HHHHHhhhhhhhcccccccccCcce-EEEechhHHHHHHHHhhhhhhheeee
Confidence 7999999999998764 112221 12334678889999999999998875
No 28
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=99.89 E-value=5.8e-21 Score=225.19 Aligned_cols=199 Identities=19% Similarity=0.235 Sum_probs=167.8
Q ss_pred hhHHHHHHHHHHHHHHHhhhccCcccccccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHH
Q 007203 393 QGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVM 472 (613)
Q Consensus 393 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l~i~~ 472 (613)
..+..+.++++++..++.....|++++.+|.+....|..+.+.++......+++++++++++++|||++.++++++++.+
T Consensus 130 ~~~~~~~v~~v~~~i~~~~~~~g~~v~vtG~~~~~~d~~~~~~~~~~~~~~~~~~lv~llL~l~frS~~~~llpl~~i~l 209 (910)
T TIGR00833 130 QKEAQEAINAVRRIVEQTNAPDGLTVHVTGPLATIADILESGDKDMNRITATTGIIVLIILLLVYRSPITMLVPLVSVGF 209 (910)
T ss_pred chHHHHHHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777765433357888889988777777777777877888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccc----chhHHHHH-HHHHhHhcccchhHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHHHHHH
Q 007203 473 IVIDLLGVMAILGIQ----LNAVSVVN-LIMSIGIAVEFCVHIVHAFLVSH---GNRNQRSQKALSTMGASVFSGITLTK 544 (613)
Q Consensus 473 ~~~~~~G~m~~~gi~----ln~~s~~~-~~i~iGl~VD~sih~~~~~~~~~---~~~~~a~~~al~~~g~~v~~~~~ltt 544 (613)
++++++|+|+++|.. +|..+... .++.+|+++||+||+++||+|+. ++++++++++++++|+|++.++ +||
T Consensus 210 si~~~~g~~~~lg~~~~~~l~~~~~~~l~~l~lGl~vDy~I~lv~r~~ee~~~g~~~~~Av~~a~~~~g~~I~~s~-lT~ 288 (910)
T TIGR00833 210 SVVVAQGIVSLLGIPGLIGVNAQTTVLLTALVIGAGTDYAVFLTGRYHEERRKGESLEEAAAEALRGTGKAILGSA-LTV 288 (910)
T ss_pred HHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 999999999999986 44555444 37889999999999999999874 4789999999999999999998 799
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 007203 545 LVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPS 593 (613)
Q Consensus 545 ~~gf~~L~fs~~~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~~~~~ 593 (613)
++||++|.+++.++++.|+. ...++++++++.+++++|+++.+++++.
T Consensus 289 ~~gf~~l~~~~~~~~~~~Gi-~~a~gvl~a~l~~ltllPall~l~g~~~ 336 (910)
T TIGR00833 289 AVAFLALSLARLPSFKTLGV-SCAVGVLVALLNAVTLTPALLTLEGREG 336 (910)
T ss_pred HHHHHHHHHccChHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999854 3445678899999999999999998643
No 29
>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=99.88 E-value=1.7e-19 Score=203.56 Aligned_cols=426 Identities=13% Similarity=0.155 Sum_probs=285.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhheeeeeccccHhHHHHHHHhc-CCCCCHHHHHHHHHhhhhhHHH
Q 007203 26 LGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSIT 104 (613)
Q Consensus 26 l~~~~l~~~~~a~~~~~Gl~~~~g~~~~~~~~~~~p~l~l~igvd~~~~l~~~~~~~-~~~~~~~~~i~~~l~~~g~~i~ 104 (613)
.++.+.++..+.++.++|++.++|.++|. ....--.+.+|+++|+.+++.++++|+ +++.+.++++.++.++++.+++
T Consensus 302 ~glia~iaL~~~v~~tl~~l~l~g~~Lnl-~siaGlIL~IGm~VD~~Ivi~Erireel~~G~~~~~Av~~g~~~~~~~Il 380 (758)
T PRK13023 302 LGVIALVALVVNIIILTAVLSLIGASISL-ASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIV 380 (758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHhccCcEEEeeHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 47778888999999999999999999997 677777788899999999999999876 4577899999999999999999
Q ss_pred HHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------------------cccCCcc
Q 007203 105 LASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHA----------------------PILGLWG 162 (613)
Q Consensus 105 ~tslTt~~~F~~~~~s~ip~ir~Fgi~~aigv~~~~v~~lt~~pall~~~~----------------------~~l~~~~ 162 (613)
.|++||+++|+.+.+...+++|.|++...+|++.+++.++++.|+++..+. +|+.
T Consensus 381 ~s~lTTlia~lpL~~~g~g~ik~FAitliiGi~~S~~~al~vt~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~dF~~--- 457 (758)
T PRK13023 381 DANLTTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRLKLVPTVTHIPFMR--- 457 (758)
T ss_pred HHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccchhhhhhcccCCCcchhh---
Confidence 999999999999988888999999999999999999999999998884210 1111
Q ss_pred chhhHHHHHHHHHHHHHHhhhcccccccccccCCCCchhhhHHHHHHHhhccCCCEEEEEecCCCCchhhhhhhhhcccc
Q 007203 163 VKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVKDYNYSSESRHTNQLCSISQ 242 (613)
Q Consensus 163 ~k~~vl~~~~~l~~~si~g~~~l~~~~~~~~~~p~ds~~~~~~~~~~~~f~~~~~~~iv~~~~d~~~~~~~~~~~~~~~~ 242 (613)
.|.....+.++++++++.+... .|+|. +- .|.|+..+.+-.+..+.. .
T Consensus 458 ~r~~~~~iS~il~~~~~~~~~~--~Gln~------GI-----------DFtGGt~i~v~~~~~~~~-~------------ 505 (758)
T PRK13023 458 LQFVTLGISVLACAIVVALFVN--IGFNY------GI-----------DFRGGSMVELQARNGDAN-L------------ 505 (758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--cCCCC------Ce-----------EecCceEEEEEecCCCCC-H------------
Confidence 1222233444444555444321 12221 00 244554344322111111 0
Q ss_pred cCchhhHHHHHHhccCCCCccccCCCCchHHHHHhhcCCCcccccccccCCccCCCCCCCCCCCCCCCCCCCCCcccCCC
Q 007203 243 CDSNSLLNEISRASSIPELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVCKDCT 322 (613)
Q Consensus 243 ~~~~~l~~~i~~~~~~~~~~~~~~~~~~wl~~f~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (613)
+++.+.+++. .++ +. +
T Consensus 506 ---~~vr~~l~~~-~~~-------~~------------------------------~----------------------- 521 (758)
T PRK13023 506 ---EDINERLAEL-NID-------SA------------------------------R----------------------- 521 (758)
T ss_pred ---HHHHHHHHhc-CCC-------Cc------------------------------e-----------------------
Confidence 0111111100 000 00 0
Q ss_pred cccccCCCCCCCCChhHHHhhhHHHHhhCCCccccCCCCCcccccccccCCCCCeEEeeEEEEecccCCChhHHHHHHHH
Q 007203 323 TCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRA 402 (613)
Q Consensus 323 ~~~~~~~~~~~~p~~~~f~~~l~~~l~~~p~~~~~~~~~~~y~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~i~~ 402 (613)
.+. + . + . .+..+ ++. .....+ ++..+..+.
T Consensus 522 --------------vq~-------~-~---------~-~------------~~~~i---~~~--~~~~~~-~~~~~~~~~ 551 (758)
T PRK13023 522 --------------VLP-------A-K---------S-P------------RSALV---IIG--SQEVGD-DAEQTVAVK 551 (758)
T ss_pred --------------EEE-------e-c---------C-C------------CceEE---EEe--CCCCcc-hHHHHHHHH
Confidence 000 0 0 0 0 00000 000 000000 111111111
Q ss_pred HHHHHHHhhhccCc-ccccccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHH
Q 007203 403 AREFSSRMSDTLKI-NIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVM 481 (613)
Q Consensus 403 ~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l~i~~~~~~~~G~m 481 (613)
+.+++.++.+. +....|. ..-.++.++.+..++++++++++-+.+-|+ |+.++..++++.-=++.++|++
T Consensus 552 ---l~~~~~~~~~~~~~~~VGp-----~vg~el~~~ai~Av~ia~i~IliYI~~RF~-~~fav~AviALiHDvlivlg~f 622 (758)
T PRK13023 552 ---LRGEFEQDYSFQRVDVVGP-----TVSEQLSRAGVLAVILSLIGIFIYVWFRFR-WQLALGAVLSTLHDVVILSGMF 622 (758)
T ss_pred ---HHhhcCCCcceeEEEEECc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHH
Confidence 11222111111 0111122 122345667777888888888877776665 7778888888877788899999
Q ss_pred HHhcccchhHHHHHHHHHhHhcccchhHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 007203 482 AILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVSH-----GNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARS 556 (613)
Q Consensus 482 ~~~gi~ln~~s~~~~~i~iGl~VD~sih~~~~~~~~~-----~~~~~a~~~al~~~g~~v~~~~~ltt~~gf~~L~fs~~ 556 (613)
.++|+++|...+.++...+|.+++++|.+..|.+|+. .+..+.+..++.++-.-.+.++ +||++..++|.+-..
T Consensus 623 sl~~~e~~l~~IAAlLTiiGYSiNDTIVVfDRIREn~~~~~~~~~~eivn~SInqTl~RTI~TS-~TTll~~l~L~ifGg 701 (758)
T PRK13023 623 IVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRYKSAPLPAIIDASINQTLSRTLLTS-FVTFLAHVPLYAFGG 701 (758)
T ss_pred HHhCceecHHHHHHHHHHHhhcccCeEEEeHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999973 2456788888888777777777 699999999988888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccccccCCCCCCCC
Q 007203 557 EIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPSRHIIIEKQQADEPSTSSNL 612 (613)
Q Consensus 557 ~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (613)
..++.|.+.|+ +++++|...++++-+.++..++.++++.+.+|+.+-|-.-|+|+
T Consensus 702 ~~i~~Fal~ll-iGiv~GtySSIfIAspl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 756 (758)
T PRK13023 702 SEIRMFALALS-VGIIVASYSSIFIAAPLLVQFGLKPRETDAGDAVDAELAQSLNL 756 (758)
T ss_pred ccHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHhccccccCcchhHHHHHHhhhcc
Confidence 88999866554 56889999999998888888887777777788777655555554
No 30
>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase.
Probab=99.88 E-value=1.2e-22 Score=225.47 Aligned_cols=144 Identities=24% Similarity=0.409 Sum_probs=136.6
Q ss_pred CeeeehhhcCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhheeeeeccccHhHHHHHHH
Q 007203 1 MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVK 80 (613)
Q Consensus 1 ~~~y~~~~~~~~~~~~~~~v~s~~~l~~~~l~~~~~a~~~~~Gl~~~~g~~~~~~~~~~~p~l~l~igvd~~~~l~~~~~ 80 (613)
||+|+.+.|++.. .++||++||+.|++++++|++++.|++.++|++++. +..++|||+++||+||+|.+ .+|+
T Consensus 72 mflYis~~l~~l~-----~v~SK~~LGlaGV~~V~~Svv~S~Gl~s~lG~~~t~-I~eViPFLvLaIGVDnifiL-a~~~ 144 (886)
T TIGR00920 72 AVLYIYYQFCNLR-----QLGSKYILGIAGLFTIFSSFVFSTAVIHFLGSELTG-LNEALPFFLLLIDLSKASAL-AKFA 144 (886)
T ss_pred HHHHHHHHhCCcc-----ccCcchhhhhHHHHHHHHHHHHHHHHHHHhCCcHHH-HHHHHhHHHhhhchhhHHHH-Hhhh
Confidence 7899999999965 499999999999999999999999999999999998 58999999999999999999 4555
Q ss_pred -hcCCCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007203 81 -RQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI 151 (613)
Q Consensus 81 -~~~~~~~~~~~i~~~l~~~g~~i~~tslTt~~~F~~~~~s~ip~ir~Fgi~~aigv~~~~v~~lt~~pall 151 (613)
+..++.+.++|++++|.+.||+|++|++|..+.|+.+.++++|++|.||+|++++++++|++++|||||+|
T Consensus 145 ~~t~~~~~v~eRIa~~l~~vGpSItltslte~l~F~vGtls~mPAV~~Fc~ya~vAVl~nyllQmTfF~A~L 216 (886)
T TIGR00920 145 LSSNSQDEVRDNIARGMAILGPTITLDTVVETLVIGVGTMSGVRRLEVLCCFGCMSVLANYFVFMTFFPACL 216 (886)
T ss_pred hccCCCCCHHHHHHHHHHHhccceeHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45568899999999999999999999999999999999999999999999999999999999999999999
No 31
>COG2409 Predicted drug exporters of the RND superfamily [General function prediction only]
Probab=99.79 E-value=1.4e-16 Score=187.62 Aligned_cols=557 Identities=16% Similarity=0.203 Sum_probs=327.8
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHhhccc----cchhhhhhhhheeeeeccccHhHHHHHHHhc-CCCCCHHHHHH
Q 007203 19 YVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVK----STLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRIS 93 (613)
Q Consensus 19 ~v~s~~~l~~~~l~~~~~a~~~~~Gl~~~~g~~----~~~~~~~~~p~l~l~igvd~~~~l~~~~~~~-~~~~~~~~~i~ 93 (613)
.+...+..++.+++++.++...+.|+..++... ++......+..+.+|+|+||++.++.||||+ +++.++++++.
T Consensus 203 ivf~s~i~a~lpL~t~~~s~~~a~~iv~~l~~~~~~~~stf~~~~~~~~~ig~gtDY~Lflv~R~~e~~~~g~~~~~a~~ 282 (937)
T COG2409 203 IVYRSVITAFLPLITVGLSLLVAQGIVALLAYAFGLGVSTFALSLLVALGIGAGTDYALFLVSRYREELREGQDREAAVG 282 (937)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHH
Confidence 356677789999999999999999999865443 3333456677788899999999999999976 45679999999
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------------
Q 007203 94 NALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVH------------------- 154 (613)
Q Consensus 94 ~~l~~~g~~i~~tslTt~~~F~~~~~s~ip~ir~Fgi~~aigv~~~~v~~lt~~pall~~~------------------- 154 (613)
.+++.+|+.+...+.|-++++..+.+.++|.++..|+.+++||.++.+.++|+.||++...
T Consensus 283 ~a~~tag~~V~~sg~tV~~a~~~l~~a~~~~~~s~g~~~ai~V~va~l~slTllPAll~llg~~~~~~~~~~~~~~~~w~ 362 (937)
T COG2409 283 TAYRTAGKTVAFSGLTVAIALLGLSFARLPFLKTLGIAAAIGVAVAVLAALTLLPALLALLGRRGFWPDPKRASESRFWR 362 (937)
T ss_pred HHHHhccceeehhhhHHHHHHHHHHhcccchhhhchhhHHHHHHHHHHHHHHHHHHHHHHhcccCCcCCcchhhhcchhh
Confidence 9999999999999999999999999999999999999999999999999999999999421
Q ss_pred --ccccCCccchhhHHHHHHHHHHHHHHhhhcccccccccccCCCCchhhhHHHHHHHhhccC--CCEEEEEecCC-CCc
Q 007203 155 --APILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVG--PPLYFVVKDYN-YSS 229 (613)
Q Consensus 155 --~~~l~~~~~k~~vl~~~~~l~~~si~g~~~l~~~~~~~~~~p~ds~~~~~~~~~~~~f~~~--~~~~iv~~~~d-~~~ 229 (613)
+.++.+|+.. +++..+++++....-...++.+.+.++.+|.+.+.++.++..+++|+.+ .|..++++..+ ..+
T Consensus 363 ~~~~~v~~~P~~--~l~~s~~ill~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~Fg~g~~~P~~v~i~~~~~~r~ 440 (937)
T COG2409 363 RVGTLVVRRPLA--ILVASLAILLVLALPLPLVRLGYDDRKTLPSSNPSRKGYAAADRHFGQGRLAPEIVLIESDHDLRT 440 (937)
T ss_pred hheeEEeeccHH--HHHHHHHHHHHHHHHhcccccCCcchhhccCccchhhHHHHHhhhccccccCCceEEecchhhhcC
Confidence 1223344332 3344445555556667888999999999999999999999999999754 57888887532 222
Q ss_pred hhhhhhhhhcccccCchhhHHHHHHhccCCCCc---cccCCC--------CchHHHH-HhhcC-CCcccccccccCCccC
Q 007203 230 ESRHTNQLCSISQCDSNSLLNEISRASSIPELS---YIAKPA--------ASWLDDF-LVWTS-PEAFGCCRKFVNGTYC 296 (613)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~---~~~~~~--------~~wl~~f-~~~~~-~~~~~~~~~~~n~~~~ 296 (613)
|.. .- .+.+.-+++.++|+.. ....+. ..|-..- -+... ..++...+-.......
T Consensus 441 ~~~-~a-----------~i~~~~~~i~~v~gv~~v~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 508 (937)
T COG2409 441 PAA-LA-----------DIDKIAKAIAAVPGVRRVRAATRPNGKPLDDASISFQAGMLGDQLGQSAKFLADRLLDILSLG 508 (937)
T ss_pred hHH-HH-----------HHHHHHHHHHhccceeeeeeeeccCCcccccccccccchhhhhhhhccccccchHHHHHHhhc
Confidence 210 00 0111111111111110 000000 0000000 00000 0000000000000000
Q ss_pred CCCC--------------CC--CCCCCCCCCCCCCCcc---cCCCc------------------cc-----ccCCC-CCC
Q 007203 297 PPDD--------------QP--PCCSPDEEPCGVNGVC---KDCTT------------------CF-----RHSDL-VNN 333 (613)
Q Consensus 297 ~~~~--------------~~--~~~~~~~~~~~~~~~~---~~~~~------------------~~-----~~~~~-~~~ 333 (613)
+.+. +- ............+... .|-.. |+ +.... ...
T Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~d~~~~~~d~~~~v~~~i~~~~~~~~~~v~~s~r~~l~~ 588 (937)
T COG2409 509 PADLSTSDGLERLRAELQQLLDGAHDMSGITVAVGGATALLRDSDADLTDFLPPVVSIIVGITFCLLIPVCRSFRSPLKA 588 (937)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhHHhhhHHHHHHHHHHHh
Confidence 0000 00 0000000000000000 00000 00 00000 000
Q ss_pred CCChhHH--------------HhhhHHHHhhCCCc------------------------------ccc---------CCC
Q 007203 334 RPSTEQF--------------REKLPWFLNALPSA------------------------------DCA---------KGG 360 (613)
Q Consensus 334 ~p~~~~f--------------~~~l~~~l~~~p~~------------------------------~~~---------~~~ 360 (613)
.....+. ...+...++..|.. +.. ...
T Consensus 589 ~~~~~~lt~~~~~g~~~~~~~~g~~~~~l~~~p~p~~~~~~~l~~~~~fg~~~~~~if~v~~~~~~~~~~~~~~~~~~~~ 668 (937)
T COG2409 589 LLTALQLTVQAATGALVVSALDGTLPQVLALLPGPLISTMPALRIAALFGLSTDYEIFLLSRQREELAAAMGQAFDTAST 668 (937)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhhhhcccc
Confidence 0000000 00000001111100 000 000
Q ss_pred CC------------cccccccccCCCCCeEEeeEEEEecccCCChhHHHHHHHHHHHHHHHhhhcc---Cccccccccee
Q 007203 361 HG------------AYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTL---KINIFPYSVFY 425 (613)
Q Consensus 361 ~~------------~y~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~g~~~ 425 (613)
.+ .|+...+. .-+..+...++.+++..-.-..+..+..+++....++..+.. +..++..|...
T Consensus 669 ~d~~~~p~~~~~~~~~~~~~~~--~~s~~i~~~~~~v~~~~~~~~~~~~~~~~~i~~~~da~i~~~~Lv~a~~~l~G~~a 746 (937)
T COG2409 669 DDSFYLPPEAFANGDFQKGRKI--TASADGMAARFVVFHFGDPASTAAIGRILAIAVAADAAIKRTPLVPAKIYLGGTAA 746 (937)
T ss_pred CccccCCHHhcCChhhhHHHHH--HhccCCceEEEEEEecCCcccHHHHHHHHHHHHHHHHhccCCcccCCEEEEechHH
Confidence 00 00000000 011223345665555322222344555555555555433221 23455566655
Q ss_pred eehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHH-----HHHhcccchhH-HHHHHHHH
Q 007203 426 IFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGV-----MAILGIQLNAV-SVVNLIMS 499 (613)
Q Consensus 426 ~~~~~~~~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l~i~~~~~~~~G~-----m~~~gi~ln~~-s~~~~~i~ 499 (613)
.+.+..+...++........++.+|+++.+..|+...++....++..+....+|. ...+|.+++.. ..+..++.
T Consensus 747 ~~~d~~~~~~~d~~~~~i~~~~~i~ii~~i~~rs~~~~~~li~~v~~s~~~a~~l~~~~~~~~lg~~~~w~vp~~~f~~L 826 (937)
T COG2409 747 WWLDIRDWLTHDLPLVVIITLCLIFIILLILLRSVVAPAVLVGTVLLSYGAALGLSVLIWQHILGIELHWLVPALSFVVL 826 (937)
T ss_pred hhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhhcCcceeeehHHHHHHHH
Confidence 5555555566677677777788888889898899888887777777777666555 44577776663 35567777
Q ss_pred hHhcccchhHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHH
Q 007203 500 IGIAVEFCVHIVHAFLVSH--GNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLH 577 (613)
Q Consensus 500 iGl~VD~sih~~~~~~~~~--~~~~~a~~~al~~~g~~v~~~~~ltt~~gf~~L~fs~~~~~~~f~~~~~~~~~~~~l~~ 577 (613)
+++++||.+-+..|++|+. |.+.+ +.++++.+|..+...+ +.....|..+.+++...+.+.+..+....++-.++.
T Consensus 827 ~avG~dY~~~li~r~ree~~~g~~~~-ii~a~~~tg~Vit~ag-~i~~~t~~~l~~s~~~~l~qig~~i~~g~l~dt~v~ 904 (937)
T COG2409 827 LAVGSDYNILLISRLREEIGAGLRTG-IIRAMRGTGGVITAAG-LIFAATMASLVFSDLRVLGQIGTTIGLGLLLDTLVV 904 (937)
T ss_pred HHcCchHHHHHHHHHHHHhccccchh-hhhhhccCCchHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999985 45555 9999999999998776 577888999999999888887655555556667888
Q ss_pred HHHHHHHHHHhhCCCC
Q 007203 578 GLVFLPVILSLFGPPS 593 (613)
Q Consensus 578 ~l~~lP~ll~~~~~~~ 593 (613)
-.++.|++..++++..
T Consensus 905 r~~~vPa~~~l~~~~~ 920 (937)
T COG2409 905 RPFMVPAIAALLGRWN 920 (937)
T ss_pred HHhhHHHHHHHhhhhc
Confidence 8889999998766543
No 32
>COG4258 Predicted exporter [General function prediction only]
Probab=99.78 E-value=1.9e-16 Score=167.51 Aligned_cols=191 Identities=20% Similarity=0.189 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHHHHHHHH-hhccccchhhhhhhhheeeeeccccHhHHHHHHHhcCCCCCHHHHHHHHHhhhhhHHHHH
Q 007203 28 LSGVILVMLSVLGSVGFFS-AIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLA 106 (613)
Q Consensus 28 ~~~l~~~~~a~~~~~Gl~~-~~g~~~~~~~~~~~p~l~l~igvd~~~~l~~~~~~~~~~~~~~~~i~~~l~~~g~~i~~t 106 (613)
+.|++++..+...++.-.. .|| ++.. ++.++-+-++|+.+||.+++....++.....|+-+. .+|..|++.++
T Consensus 284 lLgvls~gig~laglvAt~laFg-~lH~-lTl~fg~slIGeAvDYsI~yfv~h~~pG~~~dp~rs----aaev~paL~la 357 (788)
T COG4258 284 LLGVLSIGIGALAGLVATLLAFG-ELHL-LTLVFGMSLIGEAVDYSIYYFVEHMVPGNDVDPWRS----AAEVRPALLLA 357 (788)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHh-hHhH-HHHHhhhhheeecccceeeehhhccCCCCCCChhHH----HHHhhHHHHHH
Confidence 4555555555555543333 343 3444 556677778999999999887654443333444443 67899999999
Q ss_pred HHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------cccccCCcc-chhh--HHHHHH
Q 007203 107 SLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEV-----------HAPILGLWG-VKMV--VVSVFL 172 (613)
Q Consensus 107 slTt~~~F~~~~~s~ip~ir~Fgi~~aigv~~~~v~~lt~~pall~~-----------~~~~l~~~~-~k~~--vl~~~~ 172 (613)
-+||++||.++.++|+|.+|++++|+..|+..+++.+..++|.+... ..+|+..|+ .|+. .+.+.+
T Consensus 358 llTtvlayatmlfs~fpgLrQLa~faivGL~aAaltvrfllP~L~~~a~~rpv~~~arlarwlaa~~~~~w~la~llVal 437 (788)
T COG4258 358 LLTTVLAYATMLFSPFPGLRQLAIFAIVGLLAAALTVRFLLPWLCRGAPVRPVPAMARLARWLAAWRRNKWLLAGLLVAL 437 (788)
T ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCchHHHHHHHHHHhcccccchhhhHHHHH
Confidence 99999999999999999999999999999999999999999998832 223333221 1221 122222
Q ss_pred HHHHHHHHhhhcccccccccccCCCCchhhhHHHHHHHhhccCC-CEEEEEec
Q 007203 173 AFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVGP-PLYFVVKD 224 (613)
Q Consensus 173 ~l~~~si~g~~~l~~~~~~~~~~p~ds~~~~~~~~~~~~f~~~~-~~~iv~~~ 224 (613)
++.....-|.+..+.|.|..++.|-+-.+..-...+....+... .-++++++
T Consensus 438 ~~a~~llpg~~w~~~dddis~L~pvpaa~~aqe~~ira~~Gapdvry~fvv~g 490 (788)
T COG4258 438 ALASLLLPGMSWLRVDDDISQLQPVPAAILAQEKAIRALTGAPDVRYWFVVYG 490 (788)
T ss_pred HHHHhhCCchhhccCcchHHhcCCCcHHHHHHHHHHHHHhCCCCceEEEEEeC
Confidence 22333356888999999999999988777666666666665322 23456655
No 33
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=99.76 E-value=3.3e-15 Score=172.01 Aligned_cols=434 Identities=13% Similarity=0.103 Sum_probs=258.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhheeeeeccccHhHHHHHHHhc-CCCCCHHHHHHHHHhhhhhHHHH
Q 007203 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSITL 105 (613)
Q Consensus 27 ~~~~l~~~~~a~~~~~Gl~~~~g~~~~~~~~~~~p~l~l~igvd~~~~l~~~~~~~-~~~~~~~~~i~~~l~~~g~~i~~ 105 (613)
++...+.+.+.++.++|++.++|.++|. ....--.+++|+++|+.+++.++.+|+ +++.+..+++..+.+++..+++.
T Consensus 934 GliA~IALll~VlltLg~LsLlGitLTL-pgIAGIILlIGmAVDdnIVIfERIREELr~Gksl~eAI~~G~~~afs~ILd 1012 (1403)
T PRK12911 934 GVIASGAVLLNLLLIWAALQYLDAPLTL-SGLAGIVLAMGMAVDANVLVFERIREEYLLSRSLSESVEAGYKKAFSAIFD 1012 (1403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCchH-HHHHHHHHHHHHhhcCCEEEehHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 5566677778888999999999999997 666666778899999999999999886 45778999999999999999999
Q ss_pred HHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----c--------cc------CCccchhhH
Q 007203 106 ASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHA----P--------IL------GLWGVKMVV 167 (613)
Q Consensus 106 tslTt~~~F~~~~~s~ip~ir~Fgi~~aigv~~~~v~~lt~~pall~~~~----~--------~l------~~~~~k~~v 167 (613)
|++||+++++.+.+...+++|.|++..++|++++.+.++++.|+++..+. + +. .++ .|+.
T Consensus 1013 TnLTTLIA~lPLf~fGtG~vkgFAvTLiIGII~SmftALfVtP~Ll~l~l~~~~~~~l~~~~~~~~~~iDFmk~-Rk~~- 1090 (1403)
T PRK12911 1013 SNLTTILASALLLMLDTGPIKGFALTLIIGIFSSMFTALFMTKFFFMIWMNKTQETQLHMMNKFIGIKHDFLKE-CKRL- 1090 (1403)
T ss_pred HHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccchhhhhhccchhHHHH-HHHH-
Confidence 99999999999977777789999999999999999999999998873210 0 10 011 1222
Q ss_pred HHHHHHHHHHHHHhhhcccccccccccCCCCchhhhHHHHHHHhhccCCCEEEEEec-CCCCchhhhhhhhhcccccCch
Q 007203 168 VSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVKD-YNYSSESRHTNQLCSISQCDSN 246 (613)
Q Consensus 168 l~~~~~l~~~si~g~~~l~~~~~~~~~~p~ds~~~~~~~~~~~~f~~~~~~~iv~~~-~d~~~~~~~~~~~~~~~~~~~~ 246 (613)
.++.++++++|+.....-..+.++ .=.|.||..+.+-.++ .+.. . .
T Consensus 1091 ~~iS~iLIlvsli~l~~~GlglNl-----------------GIDFTGGt~Iev~~~~~~~vd-~---------------~ 1137 (1403)
T PRK12911 1091 WVVSGSVLVLGCVALGFGAWNSVL-----------------GMDFKGGYALTLDPSDVCEYD-V---------------E 1137 (1403)
T ss_pred HHHHHHHHHHHHHHHHHcccCCCC-----------------CeecCCCeEEEEEecCCCCCC-H---------------H
Confidence 222333334443322110111110 0024455444443321 1111 0 0
Q ss_pred hhHHHHHHhccCCCCccccCCCCchHHHHHhhcCCCcccccccccCCccCCCCCCCCCCCCCCCCCCCCCcccCCCcccc
Q 007203 247 SLLNEISRASSIPELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVCKDCTTCFR 326 (613)
Q Consensus 247 ~l~~~i~~~~~~~~~~~~~~~~~~wl~~f~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (613)
++.+.+++. +.+ .. +.+++. .-|
T Consensus 1138 ~VR~~L~~~--~~~---------------------~g------l~~~d~---~VQ------------------------- 1160 (1403)
T PRK12911 1138 QMRSKLRKK--FQQ---------------------IG------LSSRDF---RIR------------------------- 1160 (1403)
T ss_pred HHHHHHHhh--hhh---------------------cc------CCCCCc---eEE-------------------------
Confidence 111111100 000 00 000000 000
Q ss_pred cCCCCCCCCChhHHHhhhHHHHhhCCCccccCCCCCcccccccccCCCCCeEEeeEEEEecccCCChhHHHHHHHHHHHH
Q 007203 327 HSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREF 406 (613)
Q Consensus 327 ~~~~~~~~p~~~~f~~~l~~~l~~~p~~~~~~~~~~~y~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~i~~~~~~ 406 (613)
.. .+..++. ++... ... .| +......+.++..+..+++.+.
T Consensus 1161 ~~------g~~~~v~--------------------------IR~~~---~~l--ir--~q~~~~~~~~~~~e~~~~v~~a 1201 (1403)
T PRK12911 1161 TF------DSSEKIK--------------------------IYFSQ---NAL--DR--VEAIEGAGSEQSDHHLALVLGV 1201 (1403)
T ss_pred Ec------CCCceEE--------------------------EEecc---ccc--cc--ccccccccchhhHHHHHHHHHH
Confidence 00 0000000 00000 000 00 0000000000011122222222
Q ss_pred HHHhhhccCccccc---ccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHH
Q 007203 407 SSRMSDTLKINIFP---YSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAI 483 (613)
Q Consensus 407 ~~~~~~~~~~~~~~---~g~~~~~~~~~~~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l~i~~~~~~~~G~m~~ 483 (613)
.++...+.+...+. .+...+-...-.++.+..+..+++++++|++=+.+-| .|+.++-.+++++-=++.++|+..+
T Consensus 1202 L~~~~~~~~~~~~~~~~~~~e~VGPsVG~EL~~~AIiALliALi~ILIYI~~RF-EW~FAvgAVIALlHDVLItLGifsl 1280 (1403)
T PRK12911 1202 LSDTGSDTSSEVFDATQNFWFKVSGQLSNKMRTQAVIALFGALGIILLYVSLRF-EWRYAFSAICALIHDLLATCAVLVA 1280 (1403)
T ss_pred HHhhcCCccchhhhhcccccceECchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21110000000000 0000011122234556667777777777766555555 5888888888876666677777665
Q ss_pred h-----cccchhHHHHHHHHHhHhcccchhHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007203 484 L-----GIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVSHG-----NRNQRSQKALSTMGASVFSGITLTKLVGVIVLCF 553 (613)
Q Consensus 484 ~-----gi~ln~~s~~~~~i~iGl~VD~sih~~~~~~~~~~-----~~~~a~~~al~~~g~~v~~~~~ltt~~gf~~L~f 553 (613)
+ |+++|...+.++...+|-|+.++|.+..|.+|..+ +..+-+..++.++-.-.+.++ +||++..++|++
T Consensus 1281 ~~f~lfgiEfdltfIAALLTIIGYSINDTIVVFDRIRENlr~~~~~~l~eIIN~SINQTLsRTI~TS-lTTLLallaLll 1359 (1403)
T PRK12911 1281 LHFFLQKIQIDLQAIGALMTVLGYSLNNTLIIFDRIREDRQEKLFTPMPILINDALQKTLGRTVMTT-ATTLSVLLILLF 1359 (1403)
T ss_pred HhhhhcCeEEcHHHHHHHHHHhhccccCeEEEeHHHHHHHhhccCCCHHHHHHHHHHHhhhhhhHHH-HHHHHHHHHHHH
Confidence 4 99999999999999999999999999999998742 344667777766666666666 699999999998
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcc
Q 007203 554 ARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPSRH 595 (613)
Q Consensus 554 s~~~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~~~~~~~ 595 (613)
-..+.++.|.+.|+ +++++|...++++-+.++.+++++.++
T Consensus 1360 FGG~sI~~FAlALL-IGIIvGTYSSIFIASPLll~l~~~~~~ 1400 (1403)
T PRK12911 1360 VGGGSIFNFAFIMT-IGILLGTLSSLYIAPPLLLFMVRKEER 1400 (1403)
T ss_pred HcchhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 88888999876554 568999999999988888888765443
No 34
>PRK09579 multidrug efflux protein; Reviewed
Probab=99.75 E-value=4.9e-17 Score=193.64 Aligned_cols=191 Identities=15% Similarity=0.248 Sum_probs=154.7
Q ss_pred hHHHHHHHHHHHHHHHhhhcc--CcccccccceeeehhhH---HHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHH
Q 007203 394 GDYVNSLRAAREFSSRMSDTL--KINIFPYSVFYIFFEQY---LDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILV 468 (613)
Q Consensus 394 ~~~~~~i~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~---~~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l 468 (613)
.+..+..+++++..++.+++. |+++... +|+. +...++...+++.+++++++++++++++++.++++++
T Consensus 290 ~n~~~v~~~v~~~l~~~~~~lP~g~~~~~~------~d~~~~i~~~~~~~~~~l~~~~ilv~lvl~lfl~~~r~~l~~~~ 363 (1017)
T PRK09579 290 ANPLDVIKEVRAIMPELESQLPPNLKVSIA------YDATLFIQASIDEVVKTLGEAVLIVIVVVFLFLGALRSVLIPVV 363 (1017)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCCcEEEEE------ecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 456677777777776654321 3333222 2332 3344566778888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007203 469 VLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVS---HGNRNQRSQKALSTMGASVFSGITLTKL 545 (613)
Q Consensus 469 ~i~~~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~~~~~~~---~~~~~~a~~~al~~~g~~v~~~~~ltt~ 545 (613)
++++++++++++|+++|.++|.+|++.+++++|+.||++||+++++++. .+++.+|+.++.+++++|++.++ +||+
T Consensus 364 ~IP~s~~~~~~~l~~~G~~ln~~sl~gli~~iGi~VddaIvv~e~i~~~~~~G~~~~~A~~~~~~~~~~pil~st-lTti 442 (1017)
T PRK09579 364 TIPLSMIGVLFFMQMMGYSINLLTLLAMVLAIGLVVDDAIVVVENIHRHIEEGKSPFDAALEGAREIAMPVVSMT-ITLA 442 (1017)
T ss_pred HHHHHHHHHHHHHHHhCCCchHHHHHHHHHhhheeecCcEEeHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 9999999999999999999999999999999999999999999876553 34889999999999999999997 7999
Q ss_pred HHHHHHhhccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 007203 546 VGVIVLCFARS---EIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPP 592 (613)
Q Consensus 546 ~gf~~L~fs~~---~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~~~~ 592 (613)
++|+|+.|.+. ++++.+. ..+++++++|++.+++++|++++++.++
T Consensus 443 ~~f~Pl~f~~g~~g~~~~~l~-~~v~~~l~~S~l~al~l~P~l~~~~~~~ 491 (1017)
T PRK09579 443 AVYAPIGFLTGLTGALFKEFA-LTLAGAVIISGIVALTLSPMMCALLLRH 491 (1017)
T ss_pred HHHHHHhhcCCchhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999874 4566653 3445568899999999999999988643
No 35
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=99.75 E-value=1.8e-17 Score=194.15 Aligned_cols=217 Identities=16% Similarity=0.291 Sum_probs=169.3
Q ss_pred CcccccccccCCCCCeEEeeEEEEecccCCChhHHHHHHHHHHHHHHHhhhc--cCcccccccceeeehhhH---HHHHH
Q 007203 362 GAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDT--LKINIFPYSVFYIFFEQY---LDIWR 436 (613)
Q Consensus 362 ~~y~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~---~~i~~ 436 (613)
+.|++..++||++. .-+.++..+ ..+.++..+.+|+..+++++. .|++.. ..+|+. +...+
T Consensus 264 ~~~~~~~r~NG~pa-----v~l~V~~~~---gaN~v~v~~~V~~~l~~l~~~lP~gv~~~------~~~D~t~~V~~si~ 329 (1009)
T COG0841 264 EDYTSIARLNGKPA-----VGLAVKKAP---GANALDTAKAVKAKLAELQANLPQGVDIA------IPYDTTEFIKASIE 329 (1009)
T ss_pred CCchhheeECCcee-----EEEEEEECC---CCCHHHHHHHHHHHHHHHHHhCCCCcEEE------EecCCcHHHHHHHH
Confidence 44555556666432 223333332 234566666676666665543 134332 123433 34456
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHHH---H
Q 007203 437 VALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVH---A 513 (613)
Q Consensus 437 ~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l~i~~~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~~---~ 513 (613)
+...+++.+++++++++++|++++++++++.++++++++++|++|+++|+++|.+|+..+++++|+.||++|.+++ |
T Consensus 330 ~v~~tL~~a~~lVv~Vi~lFL~~~ratlI~~iaiPlsLlgtf~~m~~~GfslN~lTL~aLiLAiGllVDDAIVVvENI~R 409 (1009)
T COG0841 330 EVIKTLFEAIVLVVLVMYLFLGNLRATLIPALAVPVSLLGTFAVMYAFGFSLNTLTLFALVLAIGLLVDDAIVVVENIER 409 (1009)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhcceeEEeeeechHHHHHHHHHHHHhCccchHhHHHHHHHhhheeEeccEEEEeeEEe
Confidence 7888999999999999999999999999999999999999999999999999999999999999999999999984 4
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 007203 514 FLVSHGNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARS---EIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFG 590 (613)
Q Consensus 514 ~~~~~~~~~~a~~~al~~~g~~v~~~~~ltt~~gf~~L~fs~~---~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~~ 590 (613)
+++ +.++.+|+.++.++++.|++.++ ++++++|+|++|.++ .+++.|+ ..++..+++|++.++++.|++++.+.
T Consensus 410 ~~~-G~~p~~Aa~~a~~ei~~~via~T-lvliaVF~Pi~f~~G~~G~~f~~f~-~tia~a~~~S~~vAltltP~L~a~lL 486 (1009)
T COG0841 410 HMR-GLPPREAAEKAMGEIGGAVIAIT-LVLIAVFLPMAFMGGSTGELFRQFA-ITIAVAMLLSLLVALTLTPALCARLL 486 (1009)
T ss_pred ecC-CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 444 55899999999999999999987 799999999999985 5677774 45556689999999999999999987
Q ss_pred CCCcc
Q 007203 591 PPSRH 595 (613)
Q Consensus 591 ~~~~~ 595 (613)
++.++
T Consensus 487 k~~~~ 491 (1009)
T COG0841 487 KPVPP 491 (1009)
T ss_pred Ccccc
Confidence 76543
No 36
>TIGR00917 2A060601 Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
Probab=99.75 E-value=7.6e-16 Score=184.40 Aligned_cols=156 Identities=16% Similarity=0.201 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHHHHhhc-----------C-chhHHHHHHHHHHHHHHHHHHHHHhcccchhH-HHHHHHHHhHhcccc
Q 007203 440 INIAVALGAIFIVCLLMTS-----------S-LWSSAIILVVLVMIVIDLLGVMAILGIQLNAV-SVVNLIMSIGIAVEF 506 (613)
Q Consensus 440 ~~~~~~~~~v~vv~~l~~~-----------s-~~~~~~~~l~i~~~~~~~~G~m~~~gi~ln~~-s~~~~~i~iGl~VD~ 506 (613)
..++++.+++++-..+.++ | +..++..++.+++++++.+|+++|+|++++.+ +.++..+.+|+|||+
T Consensus 573 ~~~~isyiim~~y~~l~l~~~~~~~~~~v~Sk~~l~l~gv~~v~~sv~~s~Gl~~~~Gi~~t~i~~~v~PFLvL~IGVD~ 652 (1204)
T TIGR00917 573 ITILVSYLVMFAYISLSLGHSKRFKSLFIDSKVLLGISGVLIVLASVVGSVGVFSYIGLKATLIIMEVIPFLVLAVGVDN 652 (1204)
T ss_pred HHHHHHHHHHHHHHHHHHccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhH
Confidence 3555566555544333322 2 44577778888899999999999999999975 566667777888988
Q ss_pred hhHHHHHHHHhc----C---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHH
Q 007203 507 CVHIVHAFLVSH----G---------NRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVII 573 (613)
Q Consensus 507 sih~~~~~~~~~----~---------~~~~a~~~al~~~g~~v~~~~~ltt~~gf~~L~fs~~~~~~~f~~~~~~~~~~~ 573 (613)
..++++.|++.. . +.++|+.++++++|+||+.++ +|+++||+..++++.|.++.|. ...++++++
T Consensus 653 ifilv~~~~r~~~~~~~~~~~~~~~~~~~~ri~~~l~~~G~sI~lts-lt~~~aF~~g~~s~~Pavr~F~-~~aa~av~~ 730 (1204)
T TIGR00917 653 IFILVQTYQRLERFYREVGVDNEQELTLEQQLGRALGEVGPSITLAS-LSESLAFFLGALSKMPAVRAFS-LFAGLAVFI 730 (1204)
T ss_pred HHHHHHHHHHhhhccccccccccccCCHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHhccCChHHHHHH-HHHHHHHHH
Confidence 666667775521 1 568999999999999999998 7999999999999999999974 344556889
Q ss_pred HHHHHHHHHHHHHHhhCCCCcccc
Q 007203 574 GFLHGLVFLPVILSLFGPPSRHII 597 (613)
Q Consensus 574 ~l~~~l~~lP~ll~~~~~~~~~~~ 597 (613)
.++..++++|++|++-.++.+..|
T Consensus 731 ~fll~it~f~alL~ld~rR~~~~r 754 (1204)
T TIGR00917 731 DFLLQITAFVALLVLDFKRTEDNR 754 (1204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999998776554444
No 37
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=99.74 E-value=8.3e-17 Score=192.21 Aligned_cols=191 Identities=15% Similarity=0.214 Sum_probs=153.6
Q ss_pred hHHHHHHHHHHHHHHHhhhc--cCcccccccceeeehhhH---HHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHH
Q 007203 394 GDYVNSLRAAREFSSRMSDT--LKINIFPYSVFYIFFEQY---LDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILV 468 (613)
Q Consensus 394 ~~~~~~i~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~---~~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l 468 (613)
.+..+..+++++..++..++ .|++... .+|+. +....+...++.++++++++++++++++++.++++.+
T Consensus 291 ~n~~~v~~~v~~~l~~~~~~lP~g~~~~~------~~d~~~~i~~~~~~~~~~~~~~~~lv~~vl~l~l~~~r~~li~~~ 364 (1025)
T PRK10614 291 ANIIQTVDRIRAKLPELRETIPAAIDLQI------AQDRSPTIRASLEEVEQTLAISVALVILVVFLFLRSGRATLIPAV 364 (1025)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCCcEEEE------eecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34566666666665554332 1333322 23333 3345667788889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007203 469 VLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVS---HGNRNQRSQKALSTMGASVFSGITLTKL 545 (613)
Q Consensus 469 ~i~~~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~~~~~~~---~~~~~~a~~~al~~~g~~v~~~~~ltt~ 545 (613)
.+++++++++++|+++|+++|.+|+..+++++|+.||++||+++++++. ..++.+|+.++.++++.|++.++ +||+
T Consensus 365 ~ip~s~~~~~~~l~~~g~~ln~~sl~gl~~~iGi~Vd~aIvv~e~i~~~~~~g~~~~~A~~~~~~~~~~~i~~st-ltti 443 (1025)
T PRK10614 365 AVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENISRHLEAGMKPLQAALQGVREVGFTVLSMS-LSLV 443 (1025)
T ss_pred HHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhheeecCcEEEEeHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 9999999999999999999999999999999999999999999655443 34789999999999999999987 7999
Q ss_pred HHHHHHhhccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 007203 546 VGVIVLCFARS---EIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPP 592 (613)
Q Consensus 546 ~gf~~L~fs~~---~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~~~~ 592 (613)
+||+|++|.+. .+++.+. ...++++++|++.+++++|++++++.++
T Consensus 444 ~~f~Pl~~~~g~~g~~~~~~~-~~~~~~l~~S~~~al~~~P~l~~~~~~~ 492 (1025)
T PRK10614 444 AVFLPLLLMGGLPGRLFREFA-VTLSVAIGISLLVSLTLTPMMCAWLLKS 492 (1025)
T ss_pred HHHHHHHHhCCchhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999876 4677763 3445568899999999999999987543
No 38
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=99.74 E-value=9.7e-17 Score=191.66 Aligned_cols=193 Identities=9% Similarity=0.194 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHHHHHhhhc--cCcccccccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHH
Q 007203 395 DYVNSLRAAREFSSRMSDT--LKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVM 472 (613)
Q Consensus 395 ~~~~~i~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l~i~~ 472 (613)
+..+..+++++..++..++ .|+++...+.. .+..+...++...++.++++++++++++++||++.++++++.+++
T Consensus 298 n~~~v~~~v~~~l~~~~~~lp~g~~~~~~~d~---~~~i~~~~~~~~~~~~~~~~lv~lvl~l~l~s~r~~li~~~~iP~ 374 (1037)
T PRK10555 298 NEMATAKLVLNRLDELAQYFPHGLEYKVAYET---TSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPV 374 (1037)
T ss_pred CHHHHHHHHHHHHHHHHhhCCCCcEEEEeecc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHhhhHH
Confidence 4455666666666554432 13443322211 122344556778888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHHHHHHHh---c-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007203 473 IVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVS---H-GNRNQRSQKALSTMGASVFSGITLTKLVGV 548 (613)
Q Consensus 473 ~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~~~~~~~---~-~~~~~a~~~al~~~g~~v~~~~~ltt~~gf 548 (613)
++++++|+|+++|+++|.+|++.+++++|+.||++||+++++++. + .++.+++.++.++++.|++.++ +||+++|
T Consensus 375 si~~t~~~~~~~G~~ln~~sl~glii~iGi~Vd~aIvvve~i~~~~~~~G~~~~~Ai~~a~~~~~~~i~~st-ltti~~f 453 (1037)
T PRK10555 375 VLMGTFSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIA-MVLSAVF 453 (1037)
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHhhheecCeEEeHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 999999999999999999999999999999999999999887653 2 3889999999999999999987 7999999
Q ss_pred HHHhhccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 007203 549 IVLCFARS---EIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPP 592 (613)
Q Consensus 549 ~~L~fs~~---~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~~~~ 592 (613)
+|++|.++ .+++.+. ..++.++++|++.+++++|+++..+.++
T Consensus 454 lPl~~~~G~~g~~~~~l~-~~v~~~l~~S~~~al~l~P~l~~~~~~~ 499 (1037)
T PRK10555 454 VPMAFFGGTTGAIYRQFS-ITIVSAMVLSVLVAMILTPALCATLLKP 499 (1037)
T ss_pred HHHHhccCchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 99999865 4455553 2344568899999999999999987654
No 39
>PRK09577 multidrug efflux protein; Reviewed
Probab=99.73 E-value=1.1e-16 Score=191.15 Aligned_cols=193 Identities=13% Similarity=0.168 Sum_probs=153.4
Q ss_pred HHHHHHHHHHHHHHHhhhc--cCcccccccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHH
Q 007203 395 DYVNSLRAAREFSSRMSDT--LKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVM 472 (613)
Q Consensus 395 ~~~~~i~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l~i~~ 472 (613)
+..+..+++++..++..+. .|+++...+.. .+..+...++...+++.++++++++++++++|++.++++++++++
T Consensus 297 n~~~v~~~v~~~l~~~~~~lP~g~~~~~~~d~---~~~i~~~i~~~~~~l~~~~ilv~lvl~l~l~s~r~~liv~~~iP~ 373 (1032)
T PRK09577 297 NAVATEKRVRATMDELSRYFPPGVKYQIPYET---SSFVRVSMNKVVTTLIEAGVLVFLVMFLFMQNFRATLIPTLVVPV 373 (1032)
T ss_pred CHHHHHHHHHHHHHHHHhhCCCCcEEEEEecC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4556666666666654432 24443322211 122233455677788899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHHHHHHHh---c-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007203 473 IVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVS---H-GNRNQRSQKALSTMGASVFSGITLTKLVGV 548 (613)
Q Consensus 473 ~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~~~~~~~---~-~~~~~a~~~al~~~g~~v~~~~~ltt~~gf 548 (613)
++++++++|+++|+++|.+|++.+++++|+.|||+||+++++++. + .++.+|+.++.+++++|++.+. +||+++|
T Consensus 374 s~~~~~~~m~~~g~~ln~~sl~gl~~~iGi~VD~aIvvie~i~~~~~~~G~~~~~A~~~a~~~~~~~i~~~t-lt~~~~f 452 (1032)
T PRK09577 374 ALLGTFGVMLAAGFSINVLTMFGMVLAIGILVDDAIVVVENVERLMVEEGLSPYDATVKAMKQISGAIVGIT-VVLTSVF 452 (1032)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHheeeEecCcEEEehHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 999999999999999999999999999999999999999877553 2 4789999999999999999887 7999999
Q ss_pred HHHhhccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 007203 549 IVLCFARS---EIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPP 592 (613)
Q Consensus 549 ~~L~fs~~---~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~~~~ 592 (613)
+|++|.++ .+++.+. ..++.++++|++.+++++|+++..+.++
T Consensus 453 lPl~~~~g~~g~~~~~~~-~~v~~~l~~S~~~al~~~P~l~~~~~~~ 498 (1032)
T PRK09577 453 VPMAFFGGAVGNIYRQFA-LSLAVSIGFSAFLALSLTPALCATLLKP 498 (1032)
T ss_pred HHHHHhcccHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99999874 4456553 3445568899999999999999988654
No 40
>TIGR00916 2A0604s01 protein-export membrane protein, SecD/SecF family. The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins.
Probab=99.73 E-value=9.8e-17 Score=155.06 Aligned_cols=142 Identities=18% Similarity=0.231 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHHH
Q 007203 433 DIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVH 512 (613)
Q Consensus 433 ~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l~i~~~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~~ 512 (613)
+..++...++..+++++++++++++| ++.++.++++++..+++++|+|+++|+++|..++..+++++|++|||+||+.+
T Consensus 44 ~~~~~~~~~l~~a~~lv~l~l~~~~r-~~~~l~~~~~i~~~i~~t~g~m~l~G~~ln~~s~~glil~iGi~Vd~aIvv~e 122 (192)
T TIGR00916 44 ELIKAGIIALLIGLVLVLLYMLLRYE-WRGAIAAIAALVHDVILILGVLSLFGATLTLPGIAGLLTIIGYSVDDTVVIFD 122 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHHHHHHhhcCeEEehH
Confidence 34566777888899999999998888 88888888888888999999999999999999999999999999999999999
Q ss_pred HHHHh-----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHH
Q 007203 513 AFLVS-----HGNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLH 577 (613)
Q Consensus 513 ~~~~~-----~~~~~~a~~~al~~~g~~v~~~~~ltt~~gf~~L~fs~~~~~~~f~~~~~~~~~~~~l~~ 577 (613)
+|+++ ..++++++.++.++.++|++.++ +||++||.|+.+++.+.++.|. .+...+++.+++.
T Consensus 123 ~~~~~~~~~~g~~~~~Av~~a~~~~~~~il~tt-lTtii~f~pl~~~~~~~~~~~~-~~~~~gl~~s~~~ 190 (192)
T TIGR00916 123 RIREELRKYKGRTFREAINLGINQTLSRIIDTN-VTTLLAVLALYVFGGGAIKGFA-LTLGIGVIAGTYS 190 (192)
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHHHH
Confidence 98764 23788999999999999999998 7999999999999888888763 3333445555544
No 41
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=99.73 E-value=1.7e-16 Score=189.63 Aligned_cols=191 Identities=13% Similarity=0.249 Sum_probs=152.9
Q ss_pred hHHHHHHHHHHHHHHHhhhc--cCcccccccceeeehhhH---HHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHH
Q 007203 394 GDYVNSLRAAREFSSRMSDT--LKINIFPYSVFYIFFEQY---LDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILV 468 (613)
Q Consensus 394 ~~~~~~i~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~---~~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l 468 (613)
.+..+..+++++..++.++. .|+++.. .+|+. +...++...++.++++++++++++++++++.++++.+
T Consensus 297 an~~~~~~~v~~~l~~~~~~lP~g~~i~~------~~d~~~~i~~~~~~~~~~l~~~~~lv~~vl~l~l~~~r~~li~~~ 370 (1049)
T PRK15127 297 ANALDTAAAIRAELAKMEPFFPSGLKIVY------PYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTI 370 (1049)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCCceEEE------EecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34556666666655554321 1333221 13432 3446678888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHHHHHHHh---c-CCHHHHHHHHHHHHHHHHHHHHHHHH
Q 007203 469 VLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVS---H-GNRNQRSQKALSTMGASVFSGITLTK 544 (613)
Q Consensus 469 ~i~~~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~~~~~~~---~-~~~~~a~~~al~~~g~~v~~~~~ltt 544 (613)
.+++++++++++|+++|+++|.++++.+++++|+.|||+||+++++++. + .++.+|+.++.+++++|++.++ +||
T Consensus 371 ~iP~sl~~~~~~~~~~g~~ln~~sl~glil~iGi~VD~aIvvie~i~~~~~~~G~~~~~A~~~~~~~v~~~i~~~t-ltt 449 (1049)
T PRK15127 371 AVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIA-MVL 449 (1049)
T ss_pred HHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHhhccceEEEeHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 9999999999999999999999999999999999999999999877653 2 3789999999999999999987 799
Q ss_pred HHHHHHHhhccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 007203 545 LVGVIVLCFARS---EIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPP 592 (613)
Q Consensus 545 ~~gf~~L~fs~~---~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~~~~ 592 (613)
++||+|++|.++ .+++.+. ..++.++++|++.+++++|+++.++.++
T Consensus 450 ~~~f~Pl~~~~G~~g~~~~~~~-~~~~~~l~~S~l~al~~vP~l~~~~l~~ 499 (1049)
T PRK15127 450 SAVFVPMAFFGGSTGAIYRQFS-ITIVSAMALSVLVALILTPALCATMLKP 499 (1049)
T ss_pred HHHHHHHHHcCCchHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 999999999654 4556653 3444568899999999999999987654
No 42
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=99.73 E-value=1.8e-16 Score=189.57 Aligned_cols=191 Identities=11% Similarity=0.245 Sum_probs=153.5
Q ss_pred hHHHHHHHHHHHHHHHhhhc--cCcccccccceeeehhhH---HHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHH
Q 007203 394 GDYVNSLRAAREFSSRMSDT--LKINIFPYSVFYIFFEQY---LDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILV 468 (613)
Q Consensus 394 ~~~~~~i~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~---~~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l 468 (613)
.+..+..+++++..++..++ .|+++... +|+. ++..++...++++++++++++++++++|++.++++.+
T Consensus 297 ~n~~~v~~~v~~~l~~~~~~lP~g~~~~~~------~d~~~~i~~~~~~~~~~~~~a~~lv~lvl~l~l~s~r~~li~~~ 370 (1044)
T TIGR00915 297 ANALDTAKAVKAELAELEPFFPQGMKYVYP------YDTTPFVSASIEEVVHTLIEAIVLVFLVMYLFLQNFRATLIPTI 370 (1044)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCCCeEEEE------EeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34566666666666554322 13433221 2332 3455677888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHHHHHHHh---c-CCHHHHHHHHHHHHHHHHHHHHHHHH
Q 007203 469 VLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVS---H-GNRNQRSQKALSTMGASVFSGITLTK 544 (613)
Q Consensus 469 ~i~~~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~~~~~~~---~-~~~~~a~~~al~~~g~~v~~~~~ltt 544 (613)
++++++++++++|+++|.++|.++++.+++++|+.|||+||++++++++ + .++.+++.++.+++++|++.++ +||
T Consensus 371 ~iP~s~~~~~~~~~~~g~~ln~~sl~gli~~iGi~VD~aIvv~e~i~~~~~~~g~~~~~A~~~~~~~~~~~i~~tt-ltt 449 (1044)
T TIGR00915 371 AVPVVLLGTFAVLAAFGFSINTLTMFAMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIA-MVL 449 (1044)
T ss_pred HHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhheecceEEEehHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 9999999999999999999999999999999999999999999876553 2 3789999999999999999987 799
Q ss_pred HHHHHHHhhccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 007203 545 LVGVIVLCFARS---EIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPP 592 (613)
Q Consensus 545 ~~gf~~L~fs~~---~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~~~~ 592 (613)
+++|+|++|.++ ++++.+. ..++.++++|++.+++++|+++.++.++
T Consensus 450 i~~flPl~~~~G~~g~~~~~~~-~~i~~~l~~S~l~al~~~P~l~~~~~~~ 499 (1044)
T TIGR00915 450 SAVFVPMAFFGGSTGAIYRQFS-ITIVSAMALSVLVALILTPALCATMLKP 499 (1044)
T ss_pred HHHHHHHHHhccchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 999999999864 4566653 3344568899999999999999887654
No 43
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=99.73 E-value=1.5e-16 Score=190.94 Aligned_cols=198 Identities=19% Similarity=0.300 Sum_probs=158.4
Q ss_pred hhHHHHHHHHHHHHHHHhhhccCcccccccce-eeehhhHHHH---HHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHH
Q 007203 393 QGDYVNSLRAAREFSSRMSDTLKINIFPYSVF-YIFFEQYLDI---WRVALINIAVALGAIFIVCLLMTSSLWSSAIILV 468 (613)
Q Consensus 393 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~i---~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l 468 (613)
..+..+..+++++..++.++.. |.|.. ...+|+...+ .++...++..+++++++++++++|+||.++++.+
T Consensus 289 ~~n~v~~~~~v~~~l~~~~~~l-----p~~~~~~~~~d~s~~i~~~i~~l~~~~~~g~~lv~~vl~lfl~~~r~~liv~~ 363 (1021)
T PF00873_consen 289 GANIVEVSDAVKKRLEELQKTL-----PEGLEITIVYDQSEYIEESINNLISNLLIGIILVVLVLLLFLRNWRSALIVAL 363 (1021)
T ss_dssp TSBHHHHHHHHHHHHHHHGGGS-----STTEEEEEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhcC-----CccceEEEEEechHHHHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHH
Confidence 3567888888888888776532 22222 1334555444 4577889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHHHHHH---Hh-cCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 007203 469 VLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFL---VS-HGNRNQRSQKALSTMGASVFSGITLTK 544 (613)
Q Consensus 469 ~i~~~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~~~~~---~~-~~~~~~a~~~al~~~g~~v~~~~~ltt 544 (613)
+++++++.++.+|+++|+++|.+|+..+++++|+-||++|.+++..+ ++ +.++.+++.++.++++.|++.+. +||
T Consensus 364 ~IPisi~~t~~~m~~~g~slN~~SL~gl~laiG~lVDdaIVV~Eni~r~~~~~g~~~~~Aa~~~~~ev~~~i~~st-lTt 442 (1021)
T PF00873_consen 364 SIPISILGTFIFMYLFGISLNIMSLAGLILAIGMLVDDAIVVVENIYRHLEEEGKSPLEAAIEGTKEVAPPILAST-LTT 442 (1021)
T ss_dssp HHHHHHHHHHHHHHHTTTTBEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHcCCCchHHHHHhHHHhcccccccceehHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH-HHH
Confidence 99999999999999999999999999999999999999999996543 34 45899999999999999999997 799
Q ss_pred HHHHHHHhhccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccc
Q 007203 545 LVGVIVLCFARSE---IFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPSRHII 597 (613)
Q Consensus 545 ~~gf~~L~fs~~~---~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~~~~~~~~~ 597 (613)
++.|+|++|.++. +++.+. ..+.+.+++|++.+++++|++..++.+++++.+
T Consensus 443 i~vF~Pl~f~~G~~g~~~~~l~-~~v~~al~~Sllval~~~P~l~~~~l~~~~~~~ 497 (1021)
T PF00873_consen 443 IAVFLPLLFMPGIAGQFFRPLA-LTVIIALIASLLVALTLVPALAALFLKPKKKSS 497 (1021)
T ss_dssp HHHTCGGGGSBHHHHHHHHHHH-HHHHHHHHHHHHHHHTTHHHHHHHCS----TT-
T ss_pred HHHhhhhhhcCCchHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhhhhhhccccccc
Confidence 9999999999853 455543 233445788999999999999998866555533
No 44
>PRK13022 secF preprotein translocase subunit SecF; Reviewed
Probab=99.73 E-value=4.1e-16 Score=159.97 Aligned_cols=160 Identities=16% Similarity=0.201 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHH
Q 007203 432 LDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIV 511 (613)
Q Consensus 432 ~~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l~i~~~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~ 511 (613)
.++.++....+.++++++++.+.+.|+ ++.++.++++++..+++++|+|.++|+++|..++..+++.+|++||++||+.
T Consensus 123 ~~~~~~~~~a~~~al~~i~i~l~~~F~-~~~~l~~ilal~~~v~~~lg~~~l~g~~l~~~siaall~liG~sVnd~Ivv~ 201 (289)
T PRK13022 123 KELAQKGLLALLVALVGILIYIAFRFE-WRFALGAIIALLHDVIITLGIFSLFQIEFDLTVIAALLTIIGYSLNDTVVVF 201 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHHHHHHheeceEEEe
Confidence 556777888888999999988888886 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007203 512 HAFLVSH-----GNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVIL 586 (613)
Q Consensus 512 ~~~~~~~-----~~~~~a~~~al~~~g~~v~~~~~ltt~~gf~~L~fs~~~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll 586 (613)
+|++|+. ++.++++.++.+++++|++.++ +||++|++||.+.+.+.++.|.. .++.+++.|.+.++++.|+++
T Consensus 202 drire~~~~~~~~~~~~av~~a~~~~~~~~l~Ts-lTTl~~~l~L~~~g~~~i~~fa~-~l~~Gli~~~~~sl~i~p~l~ 279 (289)
T PRK13022 202 DRIRENFRKIRRKTFAEIINLSINQTLSRTIITS-LTTLLVVLALYLFGGGTLHDFAL-ALLIGIIVGTYSSIFVASPLL 279 (289)
T ss_pred eHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 9998752 4688999999999999999998 79999999999999888898854 445578999999999999999
Q ss_pred HhhCCCCc
Q 007203 587 SLFGPPSR 594 (613)
Q Consensus 587 ~~~~~~~~ 594 (613)
.+++++++
T Consensus 280 ~~~~~~~~ 287 (289)
T PRK13022 280 LWLGVRRE 287 (289)
T ss_pred HHHhhccc
Confidence 99875543
No 45
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=99.72 E-value=2.6e-16 Score=187.84 Aligned_cols=190 Identities=12% Similarity=0.237 Sum_probs=152.9
Q ss_pred HHHHHHHHHHHHHHHhhhc--cCcccccccceeeehhhH---HHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHH
Q 007203 395 DYVNSLRAAREFSSRMSDT--LKINIFPYSVFYIFFEQY---LDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVV 469 (613)
Q Consensus 395 ~~~~~i~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~---~~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l~ 469 (613)
+..+..+++++..++..++ .|+++.. .+|+. ++..++...++.++++++++++++++|+++.++++.+.
T Consensus 301 n~~~v~~~v~~~l~~~~~~lP~g~~~~~------~~d~~~~i~~~i~~~~~~l~~~~~lv~~vl~lfl~~~r~~~i~~~~ 374 (1040)
T PRK10503 301 NIIATADSIRQMLPQLTESLPKSVKVTV------LSDRTTNIRASVDDTQFELMLAIALVVMIIYLFLRNIPATIIPGVA 374 (1040)
T ss_pred CHHHHHHHHHHHHHHHHhhCCCCcEEEE------EecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhh
Confidence 4455666666665554332 1333322 23443 33446678888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHHHHHHHh--c-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007203 470 LVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVS--H-GNRNQRSQKALSTMGASVFSGITLTKLV 546 (613)
Q Consensus 470 i~~~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~~~~~~~--~-~~~~~a~~~al~~~g~~v~~~~~ltt~~ 546 (613)
+++++++++++|+++|+++|.+|++.+++++|+.|||+||++++++++ + .++.+++.++.++++.|++.+. +||++
T Consensus 375 ip~s~~~~~~~l~~~g~~ln~~sl~gl~~~iG~~Vd~aIvv~e~i~~~~~~g~~~~~aa~~~~~~~~~~vl~~t-ltti~ 453 (1040)
T PRK10503 375 VPLSLIGTFAVMVFLDFSINNLTLMALTIATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLT-FSLIA 453 (1040)
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHheeeeecCeEEEehhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999999999999999999877664 2 3678999999999999999987 79999
Q ss_pred HHHHHhhccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 007203 547 GVIVLCFARS---EIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPP 592 (613)
Q Consensus 547 gf~~L~fs~~---~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~~~~ 592 (613)
+|+|+.|++. .+++.+. .....++++|++.+++++|+++..+.++
T Consensus 454 ~f~Pl~~~~g~~G~~~~~~~-~~v~~~l~~S~~~al~~~P~l~~~~l~~ 501 (1040)
T PRK10503 454 VLIPLLFMGDIVGRLFREFA-VTLAVAILISAVVSLTLTPMMCARMLSQ 501 (1040)
T ss_pred HHHHHHhccccHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 9999999875 6667663 3445568899999999999999987543
No 46
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=99.68 E-value=1.4e-16 Score=168.08 Aligned_cols=134 Identities=25% Similarity=0.439 Sum_probs=118.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHH----HHhhccccchhhhhhhhheeeeeccccHhHHHHHHHhcC-CCCCHHHHHHHHHh
Q 007203 23 KVLLGLSGVILVMLSVLGSVGF----FSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP-MELVLETRISNALV 97 (613)
Q Consensus 23 ~~~l~~~~l~~~~~a~~~~~Gl----~~~~g~~~~~~~~~~~p~l~l~igvd~~~~l~~~~~~~~-~~~~~~~~i~~~l~ 97 (613)
++..++.+++++.++++|++|+ +.++|.+++.+...++..+++|+|+||++|++++|+++. ++.+.+++++++++
T Consensus 166 s~~~~l~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~lgvgidy~i~l~~r~ree~~~g~~~~~ai~~a~~ 245 (333)
T PF03176_consen 166 SVRAALLPLLPVLLSIVWTLGLVALLMGLLGIPLSWITPALVFVLLLGVGIDYSIHLINRYREELRRGMSRKEAIRRAVR 245 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccceeehHhhhhhHHHhhhhhHHHHHHHHHHHHHhccchHHHHHHHHh
Confidence 4566889999999999999999 445677887633445556788999999999999999874 57788999999999
Q ss_pred hhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 007203 98 EVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHAP 156 (613)
Q Consensus 98 ~~g~~i~~tslTt~~~F~~~~~s~ip~ir~Fgi~~aigv~~~~v~~lt~~pall~~~~~ 156 (613)
++|.+++.+++||++||+++.++++|++|+||+.+++|++++++.+++++|+++....+
T Consensus 246 ~~g~~i~~s~ltt~~gf~~L~~s~~~~~~~~G~~~~~gi~~~~l~~l~llPall~~~~~ 304 (333)
T PF03176_consen 246 STGRAILLSALTTAIGFGSLLFSPFPPLRQFGLLAAIGILIALLLSLTLLPALLSLLGR 304 (333)
T ss_pred ccCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 99999999999999999999999999999999999999999999999999999965443
No 47
>TIGR00966 3a0501s07 protein-export membrane protein SecF. This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein.
Probab=99.66 E-value=5.2e-15 Score=148.86 Aligned_cols=147 Identities=20% Similarity=0.243 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHH
Q 007203 432 LDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIV 511 (613)
Q Consensus 432 ~~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l~i~~~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~ 511 (613)
.++.++....++++++++++.+.+.|+ |+.+++++++++..+++++|.|+++|+++|..++..+++++|++||++|++.
T Consensus 94 ~~~~~~~~~~~~la~i~i~l~l~~~f~-~r~~l~v~~~ip~~l~~~~~~l~~~g~~ln~~sl~gli~~iGi~Vdd~Ivv~ 172 (246)
T TIGR00966 94 GELARKAVLALLAALVLILIYITVRFE-WRFALGAIVALVHDVIITVGVYSLFGIEVNLTTVAALLTIIGYSINDTVVVF 172 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHHHHHHhccCeEEEe
Confidence 345556666666777777766666666 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh-----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 007203 512 HAFLVS-----HGNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVF 581 (613)
Q Consensus 512 ~~~~~~-----~~~~~~a~~~al~~~g~~v~~~~~ltt~~gf~~L~fs~~~~~~~f~~~~~~~~~~~~l~~~l~~ 581 (613)
++++++ ++++.+++.++.+++.+|++.++ +||+++|+||++.+.+.++.|.. .++.++++|.+.++++
T Consensus 173 d~i~e~~~~~~~~~~~~a~~~a~~~~~~~ii~tt-ltti~~flpl~~~~g~~~~~~a~-~~~~Gli~~t~~sl~i 245 (246)
T TIGR00966 173 DRIRENLRKYTRKTFTEVINLSINQTLSRTINTS-LTTLLAVLALYVFGGGVIKDFSL-ALLVGVIVGTYSSIFI 245 (246)
T ss_pred hHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcchHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 888764 24788999999999999999998 79999999999998888888743 3344566666666543
No 48
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=99.65 E-value=6e-15 Score=177.11 Aligned_cols=190 Identities=15% Similarity=0.147 Sum_probs=147.5
Q ss_pred hHHHHHHHHHHHHHHHhhhccCccccccccee-eehhhHH---HHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHH
Q 007203 394 GDYVNSLRAAREFSSRMSDTLKINIFPYSVFY-IFFEQYL---DIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVV 469 (613)
Q Consensus 394 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~---~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l~ 469 (613)
.+..+..+++++..++.+++ .|.|..+ ..+|+.+ .-.++...+++.++++++++++++++|++.++++.+.
T Consensus 300 an~~~v~~~V~~~l~~~~~~-----lP~g~~~~~~~d~s~~i~~~i~~l~~~l~~g~~lv~~vl~lfl~~~r~~liv~~~ 374 (1051)
T TIGR00914 300 ENSRTVAQAVGDKLETINKT-----LPEGVEIVTTYDRSQLVDAAIATVKKNLLEGALLVIVILFLFLGNIRAALIAATV 374 (1051)
T ss_pred CCHHHHHHHHHHHHHHHHhh-----CCCCcEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44566666676666655432 1223222 1244443 3345677788889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHHHHHHH---h-----c-----CCHHHHHHHHHHHHHHHH
Q 007203 470 LVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLV---S-----H-----GNRNQRSQKALSTMGASV 536 (613)
Q Consensus 470 i~~~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~~~~~~---~-----~-----~~~~~a~~~al~~~g~~v 536 (613)
+++++++++.+|+++|+++|.+|+. .+++|+.||++|++.++.++ + . .++.+|+.++.+++++|+
T Consensus 375 iP~s~~~~~~~m~~~g~sln~~sl~--~l~iGilVDdaIVvvE~i~r~~~~~~~~~g~~~~~~~~~~A~~~g~~~~~~pi 452 (1051)
T TIGR00914 375 IPLSLLITFIGMVFQGISANLMSLG--ALDFGLIVDGAVVIVENAHRRLAEAQHHHGRQLTLKERLHEVFAASREVRRPL 452 (1051)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHH--HHHHHhhhcCcEEeehHHHHHHHhcccccccccccccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999985 56779999999999865322 2 1 256789999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 007203 537 FSGITLTKLVGVIVLCFARS---EIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPP 592 (613)
Q Consensus 537 ~~~~~ltt~~gf~~L~fs~~---~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~~~~ 592 (613)
+.++ +||+++|+|++|.+. .+++.+. ..+++++++|++.+++++|+++.++.++
T Consensus 453 l~st-lTti~~flPl~~~~g~~g~~~~~~~-~~v~~~l~~Sll~al~~~P~l~~~~~~~ 509 (1051)
T TIGR00914 453 IFGQ-LIITLVFLPIFTLTGVEGKMFHPMA-FTVVLALAGAMILSLTFVPAAVALFIRG 509 (1051)
T ss_pred HHHH-HHHHHHHHHHHHccchHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9997 799999999998774 4566653 3444568899999999999999988543
No 49
>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=99.64 E-value=1.5e-14 Score=166.21 Aligned_cols=161 Identities=16% Similarity=0.250 Sum_probs=141.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchh
Q 007203 429 EQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCV 508 (613)
Q Consensus 429 ~~~~~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l~i~~~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~si 508 (613)
..-++..++....+.++++++++++++.+|+ .++++.++++..+++++|+|+++|+++|..++..+++++|++||++|
T Consensus 259 tlg~~a~~~~~~a~~ial~lV~i~l~~~fr~--~~lia~ial~~~v~~~l~~l~l~g~~l~l~siaglil~iGi~Vd~~I 336 (755)
T PRK13024 259 TLGQDAIDAGIIAGIIGFALIFLFMLVYYGL--PGLIANIALLLYIFLTLGALSSLGAVLTLPGIAGLVLGIGMAVDANV 336 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHHHHHHhCcE
Confidence 3344556677888899999999999999986 78888888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007203 509 HIVHAFLVSH---GNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVI 585 (613)
Q Consensus 509 h~~~~~~~~~---~~~~~a~~~al~~~g~~v~~~~~ltt~~gf~~L~fs~~~~~~~f~~~~~~~~~~~~l~~~l~~lP~l 585 (613)
|+.++++++. +++++++.++.++.++|++.++ +||++|+++|.+.....++.|.. ++++++++|++.++++.|++
T Consensus 337 vi~eri~e~l~~g~~~~~Ai~~a~~~~~~~il~t~-lTTii~~lpL~~~g~g~~~~fai-tl~~Gli~s~~~sl~v~p~l 414 (755)
T PRK13024 337 LIFERIKEELRKGKSLKKAFKKGFKNAFSTILDSN-ITTLIAAAILFFFGTGPVKGFAT-TLIIGILASLFTAVFLTRLL 414 (755)
T ss_pred EehHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccchhhhHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 9999998863 4788999999999999999998 69999999999877777888743 44567899999999999999
Q ss_pred HHhhCCCC
Q 007203 586 LSLFGPPS 593 (613)
Q Consensus 586 l~~~~~~~ 593 (613)
+.++.++.
T Consensus 415 ~~~~~~~~ 422 (755)
T PRK13024 415 LELLVKRG 422 (755)
T ss_pred HHHhhccC
Confidence 99887654
No 50
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=99.63 E-value=2.1e-13 Score=151.86 Aligned_cols=549 Identities=18% Similarity=0.225 Sum_probs=301.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhheeeeeccccHhHHHH-HHHhcC----CCCCHHHHHHHHHhhhhh
Q 007203 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVN-AVKRQP----MELVLETRISNALVEVGP 101 (613)
Q Consensus 27 ~~~~l~~~~~a~~~~~Gl~~~~g~~~~~~~~~~~p~l~l~igvd~~~~l~~-~~~~~~----~~~~~~~~i~~~l~~~g~ 101 (613)
++...++..+|++.+|-.|..+|++-|. ++.---.+-+|+=+|++++++. +|++.. .+..+-+.+.++.+|++.
T Consensus 361 Ali~~~~lPLS~li~f~~M~~~gi~~Nl-MSLGGlAIaiG~~VD~AIV~vEN~~r~L~~~q~~~~~r~~~I~~a~~EV~~ 439 (1027)
T COG3696 361 ALIVIISLPLSLLIAFIVMNFFGISANL-MSLGGLAIAIGAMVDAAIVVVENAHRRLEENQHTNATRFHVIYDASKEVGR 439 (1027)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcchh-hcccchheeeeeeecceEEeehhHHHHhhhhccCCcchHHHHHHHHHHhhh
Confidence 6677788899999999999999999885 4433333444555799988884 455433 234566677889999999
Q ss_pred HHHHHHHHHHHHHHhh-cccCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------hccccc
Q 007203 102 SITLASLSEFLAFAVG-SFIPMP--ACRVFSMFAALAVLLDFFLQVTAFVALIE--------------------VHAPIL 158 (613)
Q Consensus 102 ~i~~tslTt~~~F~~~-~~s~ip--~ir~Fgi~~aigv~~~~v~~lt~~pall~--------------------~~~~~l 158 (613)
|++++.+.-.+.|+-. .++... .++-+++.-.++++.+.++++|+.|++.. .|.|.+
T Consensus 440 ~v~f~~lII~vvf~PIFtL~GvEGklF~Pma~t~~~al~~a~llsiT~iPal~~~~i~~~~~e~en~l~r~~~r~Y~plL 519 (1027)
T COG3696 440 PVFFGLLIITVVFLPIFTLTGVEGKLFAPLAFTKTYALLAALLLSITFIPALMAYLIRGILPESENPLMRFLIRVYAPLL 519 (1027)
T ss_pred hHhhhhhhheeehhhhheeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHH
Confidence 9999999888888854 344433 45556777778888888999999999882 244443
Q ss_pred C---CccchhhHHHHHHHHHHHHHHhhhcccccccccc---------cCCCCchhhhHHHH---HHHhhccCCCEEEEE-
Q 007203 159 G---LWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQI---------VLPRDSYLQGYFDN---TTEYLRVGPPLYFVV- 222 (613)
Q Consensus 159 ~---~~~~k~~vl~~~~~l~~~si~g~~~l~~~~~~~~---------~~p~ds~~~~~~~~---~~~~f~~~~~~~iv~- 222 (613)
. ++ +..+++..++.++++.+...++--++-|.- ...++..+.++.+. +++.....+.+.-|+
T Consensus 520 ~~~l~~--p~~vl~~A~~~~~~s~~l~~~lG~eF~P~l~Eg~l~~~~~~~Pg~Sl~~~~~m~~~~e~~ik~~PeV~~V~~ 597 (1027)
T COG3696 520 EFVLKL--PKLVLLGAVLSLVASLVLLPKLGREFLPELNEGDLVYMPLTIPGVSLDEALRMLQAIERAIKKFPEVERVFG 597 (1027)
T ss_pred HHHHcC--chHHHHHHHHHHHHHHHHHHhcchhcCCCCCcCceeeeeccCCCCCHHHHHHHHHHHHHHHhcCcchheeee
Confidence 2 33 233455555666677777776655544421 23345555555443 333332222232222
Q ss_pred ec---CCCCchhhhhhhhhc---c-cc------cCchhhHHHHHH-hccCCCCccc-cCCCCchHHHHHhhcCC----Cc
Q 007203 223 KD---YNYSSESRHTNQLCS---I-SQ------CDSNSLLNEISR-ASSIPELSYI-AKPAASWLDDFLVWTSP----EA 283 (613)
Q Consensus 223 ~~---~d~~~~~~~~~~~~~---~-~~------~~~~~l~~~i~~-~~~~~~~~~~-~~~~~~wl~~f~~~~~~----~~ 283 (613)
+. ..-.|+ ...|.... + ++ .+.+++.+++++ ++++|+..+. +.|-..=+|+...=.+. +-
T Consensus 598 k~GrAe~~tD~-~~~n~~et~I~Lkp~~eW~~~~t~~~lie~l~~~~~~lpG~~~~~tqPI~~R~delltGVrsdvaIKv 676 (1027)
T COG3696 598 KTGRAETATDP-APLNMIETFIELKPQEEWKDKKTRDELIEELRKTLEQLPGLANSFTQPIRMRIDELLTGVRSDLAIKV 676 (1027)
T ss_pred ccccCCCCCCC-CCcccceeeEEecchhhCCCcccHHHHHHHHHHHHHhCCCcccccccchhHHHHHHHhccccceEEEE
Confidence 21 111111 00111000 0 00 023456666665 3557765321 11111111111100000 00
Q ss_pred cc-----------ccc---cccCCc-cCCCCCCCC--CC--CCCCCCCCCCCcc-cCCCc----cc------------cc
Q 007203 284 FG-----------CCR---KFVNGT-YCPPDDQPP--CC--SPDEEPCGVNGVC-KDCTT----CF------------RH 327 (613)
Q Consensus 284 ~~-----------~~~---~~~n~~-~~~~~~~~~--~~--~~~~~~~~~~~~~-~~~~~----~~------------~~ 327 (613)
|+ ..+ |...+. ....|.+.+ +. -+|.+..+.|++. .|... .+ +.
T Consensus 677 fG~Dl~~L~~la~qI~~~lk~v~Ga~dv~~E~~~g~~~l~I~~dReaaaRyGl~v~dv~~~v~tAlgG~~v~~v~~g~~r 756 (1027)
T COG3696 677 FGDDLAELNELAEQIEEVLKTVPGAVDVLAERQEGGPYLQIDPDREAAARYGLTVGDVQDVVKTALGGAVVGEVFEGIRR 756 (1027)
T ss_pred eCCCHHHHHHHHHHHHHHHhcCcchhhheeeecCCceeEEEecCHHHHHHhCCCHHHHHHHHHHHhCCceeeeeecccee
Confidence 00 000 001110 000010100 00 0111111111110 00000 00 00
Q ss_pred CCCCCCCCChhHHHhhhHHHHhhCCCccccCCCCCcccc--cccc-cCCC-CCeEEeeEEEEecccCCChhHHHHHHHHH
Q 007203 328 SDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYST--SVDL-NGYE-SGIIQASEFRTFHTPLNKQGDYVNSLRAA 403 (613)
Q Consensus 328 ~~~~~~~p~~~~f~~~l~~~l~~~p~~~~~~~~~~~y~~--~~~~-~~~~-~~~i~~s~~~~~~~~~~~~~~~~~~i~~~ 403 (613)
++..-..| +++.+.++.. ..+|-.. .+|.+-+..+ ++++ +|.. -.+-+..|..+-..|.++ .|....++++
T Consensus 757 f~vvvrlp--~~~R~~~~~i-~~L~i~~-p~g~~ipL~~VA~I~~~~Gp~~i~rEn~~r~~vV~~nvrg-RDlgSfV~ea 831 (1027)
T COG3696 757 FPVVLRLP--EDYRNSIEAL-RNLPIPT-PNGQQIPLADVADIEVVTGPNQIKRENGKRRSVVYANVRG-RDLGSFVEEA 831 (1027)
T ss_pred cceEEEcc--hhhccCHHHH-hcccccC-CCCCEeehhHheeeEeccCcchhccccCeeEEEEEEcccc-CcHHHHHHHH
Confidence 01100111 1111111100 0000000 0000000000 1111 0100 000011233222233332 3455555655
Q ss_pred HHHH-HHhhhccCcccccccceeeehhhHHHHHH---HHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHH
Q 007203 404 REFS-SRMSDTLKINIFPYSVFYIFFEQYLDIWR---VALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLG 479 (613)
Q Consensus 404 ~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~i~~---~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l~i~~~~~~~~G 479 (613)
++-. ++.+ .|.|....|..|+++..+ .+....-++++++|+++++.|+|++.+++++..++++.++-+-
T Consensus 832 q~~i~~~V~-------LP~GY~i~~gGQFE~~qrA~~~L~vvvP~~lllIfvLl~~~f~sv~~alli~~~lP~Al~GGv~ 904 (1027)
T COG3696 832 QKAIAEKVK-------LPPGYYIEWGGQFENLQRANKRLKVVVPVSLLLIFVLLYFAFKSVGEALLIFSNLPFALIGGVI 904 (1027)
T ss_pred HHHHHhhCC-------CCCceEEEecchhHHHHHHhhcceehHHHHHHHHHHHHHHHHccchHhHHHHhcCcHHHhhhHH
Confidence 5443 3332 345655566677776544 2334456788899999999999999999999999999999999
Q ss_pred HHHHhcccchhHHHHHHHHHhHhcccchhHHHHHHHHh--c-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 007203 480 VMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVS--H-GNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARS 556 (613)
Q Consensus 480 ~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~~~~~~~--~-~~~~~a~~~al~~~g~~v~~~~~ltt~~gf~~L~fs~~ 556 (613)
.|++.|..++..+++..+-..|+++.+.+.+...+++. + .+-+|++.+.-.+.-+|+++++ ++..+|++|+++++.
T Consensus 905 ~l~l~G~~lSvas~vGFiaL~GVA~lnglvmv~~~~~~~~~~~~l~eaI~~GA~~Rvrp~lMTa-~~~~lGlvPi~~~~g 983 (1027)
T COG3696 905 ALALRGFNLSVAAAVGFIALFGVAVLNGVVMVSYIRQALQQGMSLKEAIMEGAVERVRPKLMTA-LVILLGLLPILWATG 983 (1027)
T ss_pred HhhhcCceEeehhhhhHHHHHHHHHhcchhhHHHHHHHHHcCCcHHHHHHHhHHHHhhHHHHHH-HHHHHhhhhhhhhcC
Confidence 99999999999999999999999999999999887764 2 3678999999999999999998 699999999999875
Q ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 007203 557 ---EIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPS 593 (613)
Q Consensus 557 ---~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~~~~~ 593 (613)
++.+... ..++.+++.|-..+|+++|+++.++....
T Consensus 984 ~GsEV~~plA-~vviGGl~tst~LtL~vlPaly~~~~~~~ 1022 (1027)
T COG3696 984 AGSEVMRPLA-IVVIGGLVTSTALTLLVLPALYALFGKRR 1022 (1027)
T ss_pred CchHhhccch-heeEcceeHHHHHHHHHHHHHHHHHHHhh
Confidence 4555542 22334577888999999999999887654
No 51
>PRK08578 preprotein translocase subunit SecF; Reviewed
Probab=99.61 E-value=4.4e-14 Score=145.06 Aligned_cols=158 Identities=19% Similarity=0.305 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHH
Q 007203 432 LDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIV 511 (613)
Q Consensus 432 ~~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l~i~~~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~ 511 (613)
.+..++....+.++++++++++++.||+++.++.++++++..+++++|+|+++|+++|..++..+++.+|++||++|++.
T Consensus 130 ~~~~~~~~~al~~alilI~i~l~l~F~s~~~~l~~~lal~~dv~~tlg~~~l~g~~ln~~~i~gll~iiG~sVdd~IVv~ 209 (292)
T PRK08578 130 SQFQEQALKAVGFAFIGMAVVVFLIFRTPVPSLAVILSAFSDIIIALALMNLFGIELSLATVAALLMLIGYSVDSDILLT 209 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccHHHHHHHHHHHheeecCcEEEe
Confidence 34566788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007203 512 HAFLVSHGNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFA----RSEIFVVYYFQMYLALVIIGFLHGLVFLPVILS 587 (613)
Q Consensus 512 ~~~~~~~~~~~~a~~~al~~~g~~v~~~~~ltt~~gf~~L~fs----~~~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~ 587 (613)
+|++++++++++++.++++. + + .++ +||++|+++|.+. +.+.++.|.. .++.+++++++.++++.+.++.
T Consensus 210 dri~~~~~~~~eai~~a~~~-~--i-~ts-lTTl~~~lpL~l~~~~~g~~~~~~fal-~l~~Gli~s~~~tl~~~~~~l~ 283 (292)
T PRK08578 210 TRVLKRRGTFDESIKRAMRT-G--I-TMT-LTTIAAMAVLYIVSTIPQAEVLANIAA-VLIFGLLADLMNTWLLNAGILR 283 (292)
T ss_pred hHHHHccCCHHHHHHHHHHH-H--H-HHH-HHHHHHHHHHHHHHhcccchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 99987767888999999844 3 3 344 6999999999865 4677888754 3445688999999999999999
Q ss_pred hhCCCCcc
Q 007203 588 LFGPPSRH 595 (613)
Q Consensus 588 ~~~~~~~~ 595 (613)
+++.+.+|
T Consensus 284 ~~~~~~~~ 291 (292)
T PRK08578 284 WYKTEGKK 291 (292)
T ss_pred HHHhcccC
Confidence 88655443
No 52
>PRK05812 secD preprotein translocase subunit SecD; Reviewed
Probab=99.60 E-value=4.1e-14 Score=154.45 Aligned_cols=155 Identities=16% Similarity=0.244 Sum_probs=136.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHHH
Q 007203 433 DIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVH 512 (613)
Q Consensus 433 ~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l~i~~~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~~ 512 (613)
+..+..+.+.+++++++++++++++| +.++++.++++..++.++|+|.++|+++|..++..+++++|++||++|.+.+
T Consensus 330 ~~i~~~~~A~lig~ilV~i~m~~~yr--~~glia~iaL~~~v~~~l~~~~l~g~~l~l~siaGlil~iG~~VD~~IVI~E 407 (498)
T PRK05812 330 DSIRAGLIAGLIGLALVLLFMILYYR--LFGLIANIALVANLVLILAVLSLLGATLTLPGIAGIVLTIGMAVDANVLIFE 407 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHhheeEEeceEEEeH
Confidence 45566778888999999999999998 5789999999999999999999999999999999999999999999999999
Q ss_pred HHHHhc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007203 513 AFLVSH---GNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLF 589 (613)
Q Consensus 513 ~~~~~~---~~~~~a~~~al~~~g~~v~~~~~ltt~~gf~~L~fs~~~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~ 589 (613)
|++++. ++.++++.++.++.+.|++.+. +||++++++|.+.....++.|.. ++++++++|++.++++.|+++.++
T Consensus 408 rIreel~~g~~~~~Ai~~~~~~~~~~Il~s~-lTTlia~l~L~~~g~g~i~~fAi-tl~iGii~s~~~sl~vtp~l~~~~ 485 (498)
T PRK05812 408 RIREELREGRSLRSAIEAGFKRAFSTILDSN-ITTLIAAIILYALGTGPVKGFAV-TLGIGILTSMFTAITVTRALVNLL 485 (498)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998863 4788999999999999999998 69999999999877667888753 445578999999999999999965
Q ss_pred CC
Q 007203 590 GP 591 (613)
Q Consensus 590 ~~ 591 (613)
..
T Consensus 486 ~~ 487 (498)
T PRK05812 486 YG 487 (498)
T ss_pred Hh
Confidence 43
No 53
>TIGR01129 secD protein-export membrane protein SecD. SecD from Mycobacterium tuberculosis has a long Pro-rich insert.
Probab=99.59 E-value=5.3e-14 Score=150.23 Aligned_cols=151 Identities=18% Similarity=0.276 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHH
Q 007203 432 LDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIV 511 (613)
Q Consensus 432 ~~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l~i~~~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~ 511 (613)
.+..+..+.+.+++++++++++++++| +.++++.++++..++.++|+|+++|+++|..++..+++++|++||++|++.
T Consensus 244 ~~~i~~~~~a~~ig~ilV~l~~~~~yr--~~gl~a~ial~~~v~~~l~~~~l~g~~l~l~siaglil~iG~~VD~~Ivi~ 321 (397)
T TIGR01129 244 ADSIEAGIKAGLIGLVLVLVFMILYYR--LFGLIAAIALVINIVLILAILSAFGATLTLPGIAGLILTIGMAVDANVLIY 321 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHhheeeeceEEEe
Confidence 344567778889999999999999999 688999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007203 512 HAFLVSH---GNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVIL 586 (613)
Q Consensus 512 ~~~~~~~---~~~~~a~~~al~~~g~~v~~~~~ltt~~gf~~L~fs~~~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll 586 (613)
+|++++. ++..+++.++.++.++|++.++ +||++++++|.+.....++.|.. ++++++++|++.++++.+.++
T Consensus 322 erire~l~~g~~~~~Ai~~~~~~~~~~I~~s~-lTtlia~l~L~~~g~g~~~~fA~-tl~igii~s~~~sl~vtr~~~ 397 (397)
T TIGR01129 322 ERIKEELRLGKSVRQAIEAGFERAFSTIFDAN-ITTLIAALILYVFGTGPVKGFAV-TLAIGIIASLFTALVFTRLLL 397 (397)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccchhHHHH-HHHHHHHHHHHHHHHHHHhhC
Confidence 9998763 4778999999999999999998 69999999999877667888743 445578899999999998764
No 54
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional
Probab=99.57 E-value=1.6e-13 Score=157.34 Aligned_cols=161 Identities=16% Similarity=0.213 Sum_probs=140.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchhH
Q 007203 430 QYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVH 509 (613)
Q Consensus 430 ~~~~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l~i~~~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih 509 (613)
.-.+..++...+.+++++++++++++++|- .++++.+.++..++.++|+|.++|++||..++..+++++|++||++|.
T Consensus 366 lg~~~i~~~~~aliig~ilV~l~m~lfyr~--~glia~ial~~~vl~~l~~l~l~g~tLnl~~IaGiil~IGm~VD~~IV 443 (855)
T PRK14726 366 LGADSIAAGLVAGLIAAILVAALMIGFYGF--LGVIAVIALIVNVVLIIAVLSLLGATLTLPGIAGIVLTIGMAVDSNVL 443 (855)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCcceeHHHHHHHHHHHHhhhCceEE
Confidence 334455667778888888888888888873 788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007203 510 IVHAFLVSH---GNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVIL 586 (613)
Q Consensus 510 ~~~~~~~~~---~~~~~a~~~al~~~g~~v~~~~~ltt~~gf~~L~fs~~~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll 586 (613)
+.+|.+++. +++.+++.++.++++.|++.+. +||++++++|.+.+...++.|.. ++.++++.|++.++++.|.++
T Consensus 444 I~ErIreel~~G~s~~~Ai~~g~~~a~~~Il~s~-lTTlia~lpL~~~g~~~ikgFAv-tl~igii~Sl~~Al~vtp~l~ 521 (855)
T PRK14726 444 IYERIREEEKTGHSLIQALDRGFSRALATIVDAN-VTILIAAVILFFLGSGAVRGFAV-TLAVGILTTVFTAFTLTRSLV 521 (855)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCcchHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 999998873 3788999999999999999998 79999999999999888898753 445678999999999999999
Q ss_pred HhhCCCCc
Q 007203 587 SLFGPPSR 594 (613)
Q Consensus 587 ~~~~~~~~ 594 (613)
.++.++++
T Consensus 522 ~~~l~~~~ 529 (855)
T PRK14726 522 AVWLRRRR 529 (855)
T ss_pred HHHhcccC
Confidence 98755443
No 55
>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=99.57 E-value=1.4e-13 Score=156.09 Aligned_cols=157 Identities=18% Similarity=0.229 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHHH
Q 007203 433 DIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVH 512 (613)
Q Consensus 433 ~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l~i~~~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~~ 512 (613)
+..+......+++++++++.+.+.+| ..++++.++++..++.++|+|.++|+++|..++..+++++|++||++|++.+
T Consensus 275 ~~~~~~~~A~ii~~~lV~lfm~~~Y~--~~glia~iaL~~~v~~tl~~l~l~g~~Lnl~siaGlIL~IGm~VD~~Ivi~E 352 (758)
T PRK13023 275 DYASAAVLAALLAALVVGLFMVLSYG--ILGVIALVALVVNIIILTAVLSLIGASISLASIAGLVLTIGLAVDAHILIYE 352 (758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHHHHhccCcEEEee
Confidence 33444555666666666666666665 4678889999999999999999999999999999999999999999999999
Q ss_pred HHHHhc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007203 513 AFLVSH---GNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLF 589 (613)
Q Consensus 513 ~~~~~~---~~~~~a~~~al~~~g~~v~~~~~ltt~~gf~~L~fs~~~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~ 589 (613)
|++++. ++.++++.++.++.++|++.++ +||++++++|.+.....++.|. .+++++++.|++.++++.|.++.++
T Consensus 353 rireel~~G~~~~~Av~~g~~~~~~~Il~s~-lTTlia~lpL~~~g~g~ik~FA-itliiGi~~S~~~al~vt~~l~~~~ 430 (758)
T PRK13023 353 RVREDRRKGYSVVQAMESGFYRALSTIVDAN-LTTLIAALVLFLLGSGTVHGFA-LTVAIGIGTTLFTTLTFTRLLIAQW 430 (758)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998763 4788999999999999999998 7999999999998888888874 3455678999999999999999988
Q ss_pred CCCC
Q 007203 590 GPPS 593 (613)
Q Consensus 590 ~~~~ 593 (613)
.+..
T Consensus 431 ~~~~ 434 (758)
T PRK13023 431 VRTA 434 (758)
T ss_pred Hhhc
Confidence 5543
No 56
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family.
Probab=99.56 E-value=3e-12 Score=151.06 Aligned_cols=156 Identities=21% Similarity=0.245 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcC-------chhHHHHHHHHHHHHHHHHHHHHHhcccchhHH-HHHHHHHhHhcccchhHH
Q 007203 439 LINIAVALGAIFIVCLLMTSS-------LWSSAIILVVLVMIVIDLLGVMAILGIQLNAVS-VVNLIMSIGIAVEFCVHI 510 (613)
Q Consensus 439 ~~~~~~~~~~v~vv~~l~~~s-------~~~~~~~~l~i~~~~~~~~G~m~~~gi~ln~~s-~~~~~i~iGl~VD~sih~ 510 (613)
...++++.+++++-..+.+++ ...++..++.++++++..+|++.++|+++|.++ .++.-+++|+|||+..++
T Consensus 399 ~~~~~is~~lm~~Ya~~~l~~~d~v~sk~~Lgl~GVliv~lSv~~s~Gl~~~~Gi~fn~i~~~ViPFLvLgIGVDn~Fll 478 (1145)
T TIGR00918 399 AIRIVSGYLLMLAYACLTMLRWDCAKSQGSVGLAGVLLVALSVAAGLGLCALLGISFNAATTQVLPFLALGVGVDDVFLL 478 (1145)
T ss_pred HHHHHHHHHHHHHHHHHHhccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHhhhhHHHhhhhhcchhHH
Confidence 444556666665544444443 344556677778889999999999999999986 566677799999999999
Q ss_pred HHHHHHhc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007203 511 VHAFLVSH--GNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSL 588 (613)
Q Consensus 511 ~~~~~~~~--~~~~~a~~~al~~~g~~v~~~~~ltt~~gf~~L~fs~~~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~ 588 (613)
+++|++.. .+.++|+.++++++|++|+.++ +|++++|...++++.|.++.|.. ...+.+++.++..++++|++|++
T Consensus 479 v~~~~~t~~~~~v~~r~~~~l~~~g~SI~~ts-lt~~~aF~~ga~t~~Pavr~F~~-~~a~av~~~~l~qit~F~AlLaL 556 (1145)
T TIGR00918 479 AHAFSETGQNIPFEERTGECLKRTGASVVLTS-ISNVTAFFMAALIPIPALRAFSL-QAAIVVVFNFAAVLLVFPAILSL 556 (1145)
T ss_pred HHHHhhcCccCCHHHHHHHHHHHhcceeeHHH-HHHHHHHHHHhcCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998854 3567899999999999999998 79999999999999999999743 33456888999999999999998
Q ss_pred hCCCCccc
Q 007203 589 FGPPSRHI 596 (613)
Q Consensus 589 ~~~~~~~~ 596 (613)
=+++.+..
T Consensus 557 D~rR~~~~ 564 (1145)
T TIGR00918 557 DLRRREDR 564 (1145)
T ss_pred HHHHHHcC
Confidence 76654433
No 57
>PRK13021 secF preprotein translocase subunit SecF; Reviewed
Probab=99.48 E-value=1.7e-12 Score=132.72 Aligned_cols=171 Identities=14% Similarity=0.104 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHH
Q 007203 432 LDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIV 511 (613)
Q Consensus 432 ~~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l~i~~~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~ 511 (613)
.++.+.....+.++++++++.+.+.|+ ++.++.++++++..+++++|++.++|+++|..+++.++..+|.++|++|.+.
T Consensus 122 ~~~~~~~~~a~~~ali~I~lyl~~rF~-~~~~l~al~al~~dv~~~l~~l~l~g~~l~~~~iaglLtliG~svnd~IVi~ 200 (297)
T PRK13021 122 QELAEQGGLALLVAMLCILGYLSYRFE-WRLASGALFALVHDVIFVLAFFALTQMEFNLTVLAAVLAILGYSLNDSIIIA 200 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHHHHeeeCCEEEe
Confidence 345666778888899999888888887 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007203 512 HAFLVSH-----GNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVIL 586 (613)
Q Consensus 512 ~~~~~~~-----~~~~~a~~~al~~~g~~v~~~~~ltt~~gf~~L~fs~~~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll 586 (613)
+|++|+. .+.++++.++.++..+|++.++ +||++|++||++...+..+.|.. .++.++++|.+.++++-+.++
T Consensus 201 drire~~~~~~~~~~~e~i~~ai~~~lrr~l~Ts-lTt~l~llpL~l~G~~~~~~fA~-~li~Gli~gt~sslfva~pl~ 278 (297)
T PRK13021 201 DRIRELLIAKPKLAIQEINNQAIVATFSRTMVTS-GTTLMTVGALWIMGGGPLEGFSI-AMFIGILTGTFSSISVGTSLP 278 (297)
T ss_pred eHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 9998753 2678999999999999999998 79999999999988788888754 344568899999999988777
Q ss_pred HhhCCCCcccccccccccCC
Q 007203 587 SLFGPPSRHIIIEKQQADEP 606 (613)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~ 606 (613)
..++..+++.+ ++++++.|
T Consensus 279 ~~~~~~~~~~~-~~~~~~~~ 297 (297)
T PRK13021 279 ELLGLSPEHYK-VQVISDTP 297 (297)
T ss_pred HHHccChhhcC-ccccccCC
Confidence 77764443322 33344443
No 58
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents bacterial SecD and SecF protein export membrane proteins and their archaeal homologues []. It is found in association with PF07549 from PFAM SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=99.48 E-value=4e-12 Score=122.23 Aligned_cols=160 Identities=21% Similarity=0.260 Sum_probs=132.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchh
Q 007203 429 EQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCV 508 (613)
Q Consensus 429 ~~~~~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l~i~~~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~si 508 (613)
..-++..++....++++++++++.+.+.|| ++.++..++.++.-++.++|+|.++|+++|..+...+++.+|.+||++|
T Consensus 24 ~~g~~~~~~~~~a~~~al~~i~iyi~~rf~-~~~~~~aii~l~~dv~i~l~~~~~~~~~l~l~~iaall~~iG~sVd~~I 102 (189)
T PF02355_consen 24 TLGSDLLKSALIALIIALIAILIYIFLRFR-WRFALAAIIALIHDVLITLGIFSLFGIELTLPSIAALLTIIGYSVDDNI 102 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHT-EE-HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHHHHHHHHhcce
Confidence 444556777788888998888888888877 6778888888888888999999999999999999999999999999999
Q ss_pred HHHHHHHHhc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007203 509 HIVHAFLVSH-----GNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLP 583 (613)
Q Consensus 509 h~~~~~~~~~-----~~~~~a~~~al~~~g~~v~~~~~ltt~~gf~~L~fs~~~~~~~f~~~~~~~~~~~~l~~~l~~lP 583 (613)
-+.+|.+|+. ++.++++.++++++....+.+. +||++...+|.+.....++.|.. .++.+++.+.+.++++-+
T Consensus 103 VifdRIre~~~~~~~~~~~~~~~~s~~~tl~r~i~t~-~ttll~~~~L~~~g~~~l~~Fa~-~l~iGvi~~~~ss~~ia~ 180 (189)
T PF02355_consen 103 VIFDRIREELRASRGKSLREAINISIKQTLSRTIDTS-LTTLLAALILFFFGGGSLKGFAL-TLIIGVIIGTYSSLFIAR 180 (189)
T ss_dssp HHHHHHHHHHCC-STS-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHC--CHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccchHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 9999999982 3678999999999999888887 69999999999888888898854 445578999999999999
Q ss_pred HHHHhhCC
Q 007203 584 VILSLFGP 591 (613)
Q Consensus 584 ~ll~~~~~ 591 (613)
.++.++.+
T Consensus 181 ~l~~~l~~ 188 (189)
T PF02355_consen 181 PLLYWLVK 188 (189)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99987753
No 59
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=99.46 E-value=1.9e-12 Score=142.15 Aligned_cols=157 Identities=16% Similarity=0.198 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCc--hhHHHHHHHHHHHHHHHHHHHHHh-cccchhHHHHHHHHHhHhcccchhHHHH
Q 007203 436 RVALINIAVALGAIFIVCLLMTSSL--WSSAIILVVLVMIVIDLLGVMAIL-GIQLNAVSVVNLIMSIGIAVEFCVHIVH 512 (613)
Q Consensus 436 ~~~~~~~~~~~~~v~vv~~l~~~s~--~~~~~~~l~i~~~~~~~~G~m~~~-gi~ln~~s~~~~~i~iGl~VD~sih~~~ 512 (613)
.+.+.+...++++.++++++++..+ +.++++.+.++..++.++|+|.++ |.+||..++..+++++|++||.+|.+.+
T Consensus 436 ~~~i~~gl~A~iig~vlV~lFm~~~Yr~~glva~iAL~~~l~l~l~vmsll~G~tLtLpgIAGiILtIGmaVDanIVI~E 515 (604)
T PRK12933 436 AENIENGFAALALGMGITLLFMALWYRRLGWVANVALIANMVCLFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFE 515 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhhccCcEEEeh
Confidence 3344444444444444433333323 678999999999999999999998 9999999999999999999999999999
Q ss_pred HHHHhc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007203 513 AFLVSH---GNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLF 589 (613)
Q Consensus 513 ~~~~~~---~~~~~a~~~al~~~g~~v~~~~~ltt~~gf~~L~fs~~~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~ 589 (613)
|.+++. ++..+++.++.+++..+++.+. +||++++++|.+.....++.|.. ++.++++.|++.++++.|+++.++
T Consensus 516 RIrEel~~G~s~~~Ai~~G~~~a~~~Ildan-lTTlia~lpL~~~Ggg~ikgFAv-TL~iGIl~S~ftAi~vtr~l~~~~ 593 (604)
T PRK12933 516 RIKDKLKEGRSFAQAIDTGFDSAFSTIFDAN-FTTMITAVVLYSIGNGPIQGFAL-TLGLGLLTSMFTGIFASRALINLV 593 (604)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHccccchHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998863 4778999999999999999998 79999999999888778888754 445578999999999999999987
Q ss_pred CCCCc
Q 007203 590 GPPSR 594 (613)
Q Consensus 590 ~~~~~ 594 (613)
-..++
T Consensus 594 ~~~~~ 598 (604)
T PRK12933 594 YGRDA 598 (604)
T ss_pred hcccc
Confidence 65443
No 60
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=99.42 E-value=9.1e-12 Score=144.06 Aligned_cols=153 Identities=9% Similarity=0.221 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHHHHHHHh
Q 007203 438 ALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVS 517 (613)
Q Consensus 438 ~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l~i~~~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~~~~~~~ 517 (613)
.....+++++++++.+++.+| ..+++..++++..++.++|+|.++|+++|..++..+++++|++||++|.+.+|.+++
T Consensus 911 gilA~lIglaLVlIFMlL~YR--f~GliA~IALll~VlltLg~LsLlGitLTLpgIAGIILlIGmAVDdnIVIfERIREE 988 (1403)
T PRK12911 911 GIISVCLGLAVLIVLMSVYYR--FGGVIASGAVLLNLLLIWAALQYLDAPLTLSGLAGIVLAMGMAVDANVLVFERIREE 988 (1403)
T ss_pred hHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhcCCEEEehHHHHH
Confidence 344445555444444444444 235667777777788889999999999999999999999999999999999999887
Q ss_pred c---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 007203 518 H---GNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPSR 594 (613)
Q Consensus 518 ~---~~~~~a~~~al~~~g~~v~~~~~ltt~~gf~~L~fs~~~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~~~~~~ 594 (613)
. ++..+++.++.++..+|++.++ +||++++++|.+.....++.|.. ++++++++|++.++++.|+++.++.+..+
T Consensus 989 Lr~Gksl~eAI~~G~~~afs~ILdTn-LTTLIA~lPLf~fGtG~vkgFAv-TLiIGII~SmftALfVtP~Ll~l~l~~~~ 1066 (1403)
T PRK12911 989 YLLSRSLSESVEAGYKKAFSAIFDSN-LTTILASALLLMLDTGPIKGFAL-TLIIGIFSSMFTALFMTKFFFMIWMNKTQ 1066 (1403)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccccccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3 4788999999999999999998 69999999997766666777743 44567899999999999999998765433
No 61
>TIGR00916 2A0604s01 protein-export membrane protein, SecD/SecF family. The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins.
Probab=99.40 E-value=7e-13 Score=128.25 Aligned_cols=118 Identities=13% Similarity=0.160 Sum_probs=106.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhheeeeeccccHhHHHHHHHhc-C--CCCCHHHHHHHHHhhhhh
Q 007203 25 LLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-P--MELVLETRISNALVEVGP 101 (613)
Q Consensus 25 ~l~~~~l~~~~~a~~~~~Gl~~~~g~~~~~~~~~~~p~l~l~igvd~~~~l~~~~~~~-~--~~~~~~~~i~~~l~~~g~ 101 (613)
..++..++.+..++++++|++.++|+++|. .+.+.+.+++|+++||++|+.++++++ + ++.++++++.++.++.+.
T Consensus 71 ~~~l~~~~~i~~~i~~t~g~m~l~G~~ln~-~s~~glil~iGi~Vd~aIvv~e~~~~~~~~~~g~~~~~Av~~a~~~~~~ 149 (192)
T TIGR00916 71 RGAIAAIAALVHDVILILGVLSLFGATLTL-PGIAGLLTIIGYSVDDTVVIFDRIREELRKYKGRTFREAINLGINQTLS 149 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCcccH-HHHHHHHHHHHHhhcCeEEehHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Confidence 345666778888899999999999999997 788888888999999999999999875 3 467899999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHH
Q 007203 102 SITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQ 143 (613)
Q Consensus 102 ~i~~tslTt~~~F~~~~~s~ip~ir~Fgi~~aigv~~~~v~~ 143 (613)
|++.|++||+++|+.+.+++.+.+|.|++...+|++.+++.+
T Consensus 150 ~il~ttlTtii~f~pl~~~~~~~~~~~~~~~~~gl~~s~~~a 191 (192)
T TIGR00916 150 RIIDTNVTTLLAVLALYVFGGGAIKGFALTLGIGVIAGTYSS 191 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998765
No 62
>COG2409 Predicted drug exporters of the RND superfamily [General function prediction only]
Probab=99.39 E-value=3.8e-11 Score=142.03 Aligned_cols=194 Identities=19% Similarity=0.232 Sum_probs=155.7
Q ss_pred HHHHHHHHHHHHhhhccCcccccccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHH
Q 007203 398 NSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDL 477 (613)
Q Consensus 398 ~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l~i~~~~~~~ 477 (613)
+..+.+|++.++.....+++.+.+|......+......++......+++.++++++++.+||+..++++++.........
T Consensus 146 es~~~v~~~v~~~~~~~~~~~~~tG~~~~~~d~~~~~~~~~~~~e~i~~~~i~v~Llivf~s~i~a~lpL~t~~~s~~~a 225 (937)
T COG2409 146 ESVEAVRSIVRQLPAPDGLTAYVTGPAATSADLTAAGARDLKVIEAITLVLILVVLLIVYRSVITAFLPLITVGLSLLVA 225 (937)
T ss_pred HHHHHHHHHhcccCCCCceEEEEechHhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666654434677888888766666665666666777788889999999999999999999999998888887
Q ss_pred HHHHHHhcccchh-----HHHHHHHHHhHhcccchhHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007203 478 LGVMAILGIQLNA-----VSVVNLIMSIGIAVEFCVHIVHAFLVSH---GNRNQRSQKALSTMGASVFSGITLTKLVGVI 549 (613)
Q Consensus 478 ~G~m~~~gi~ln~-----~s~~~~~i~iGl~VD~sih~~~~~~~~~---~~~~~a~~~al~~~g~~v~~~~~ltt~~gf~ 549 (613)
.|+..++.-..+. .......+.+|.++||++-+..||+|+. .++++++.++++..|..|..++ .|.++++.
T Consensus 226 ~~iv~~l~~~~~~~~stf~~~~~~~~~ig~gtDY~Lflv~R~~e~~~~g~~~~~a~~~a~~tag~~V~~sg-~tV~~a~~ 304 (937)
T COG2409 226 QGIVALLAYAFGLGVSTFALSLLVALGIGAGTDYALFLVSRYREELREGQDREAAVGTAYRTAGKTVAFSG-LTVAIALL 304 (937)
T ss_pred HHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHhccceeehhh-hHHHHHHH
Confidence 7777744433222 2345678889999999999999999874 3899999999999999999998 69999999
Q ss_pred HHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 007203 550 VLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPS 593 (613)
Q Consensus 550 ~L~fs~~~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~~~~~ 593 (613)
.|.|.+.+.++... .....++.++++.++.++|+++.+++++.
T Consensus 305 ~l~~a~~~~~~s~g-~~~ai~V~va~l~slTllPAll~llg~~~ 347 (937)
T COG2409 305 GLSFARLPFLKTLG-IAAAIGVAVAVLAALTLLPALLALLGRRG 347 (937)
T ss_pred HHHhcccchhhhch-hhHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 99999999999863 23445678889999999999999999877
No 63
>PRK13022 secF preprotein translocase subunit SecF; Reviewed
Probab=99.27 E-value=1.4e-11 Score=126.59 Aligned_cols=128 Identities=10% Similarity=0.194 Sum_probs=117.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhheeeeeccccHhHHHHHHHhcC---CCCCHHHHHHHHHhhhh
Q 007203 24 VLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP---MELVLETRISNALVEVG 100 (613)
Q Consensus 24 ~~l~~~~l~~~~~a~~~~~Gl~~~~g~~~~~~~~~~~p~l~l~igvd~~~~l~~~~~~~~---~~~~~~~~i~~~l~~~g 100 (613)
...++..++++..+++.++|++.++|+++|. .+......++|+++||++++.++++|.. ++.+.+|++.++.+++.
T Consensus 150 ~~~~l~~ilal~~~v~~~lg~~~l~g~~l~~-~siaall~liG~sVnd~Ivv~drire~~~~~~~~~~~~av~~a~~~~~ 228 (289)
T PRK13022 150 WRFALGAIIALLHDVIITLGIFSLFQIEFDL-TVIAALLTIIGYSLNDTVVVFDRIRENFRKIRRKTFAEIINLSINQTL 228 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCcccH-HHHHHHHHHHHHheeceEEEeeHHHHHHhhccCCCHHHHHHHHHHHHH
Confidence 3458888999999999999999999999997 7777778889999999999999998764 25789999999999999
Q ss_pred hHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007203 101 PSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (613)
Q Consensus 101 ~~i~~tslTt~~~F~~~~~s~ip~ir~Fgi~~aigv~~~~v~~lt~~pall~ 152 (613)
.+++.|++||+++|+.+.+.+.+.++.|++...+|++.+.+.++++.|+++.
T Consensus 229 ~~~l~TslTTl~~~l~L~~~g~~~i~~fa~~l~~Gli~~~~~sl~i~p~l~~ 280 (289)
T PRK13022 229 SRTIITSLTTLLVVLALYLFGGGTLHDFALALLIGIIVGTYSSIFVASPLLL 280 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999874
No 64
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog. In Drosophila melanogaster, this protein associates with the smoothened protein to transduce hedgehog signals, leading to the activation of wingless, decapentaplegic and patched itself. It participates in cell interactions that establish pattern within the segment and imaginal disks during development. The mouse homologue may play a role in epidermal development. The human Niemann-Pick C1 protein, defects in which cause Niemann-Pick type II disease, is also a member of this family. This protein is involved in the intracellular trafficking of cholesterol, and may play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural functional integrity of nerve terminals.; GO: 0008158 hedgehog receptor activity, 0016020 membrane
Probab=99.26 E-value=2e-10 Score=134.93 Aligned_cols=136 Identities=17% Similarity=0.276 Sum_probs=118.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHHHHHHHhc--CCHHHHHHHHHHHHHHHHH
Q 007203 460 LWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVSH--GNRNQRSQKALSTMGASVF 537 (613)
Q Consensus 460 ~~~~~~~~l~i~~~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~~~~~~~~--~~~~~a~~~al~~~g~~v~ 537 (613)
+..++..++..+++++..+|++.++|++++++..+..-+.+|+|||+...+++.|++.. .+.+||+.+++++.|++++
T Consensus 249 ~~l~~~gv~~~~la~~~~~Gl~~~~G~~~~~i~~v~PFLvlgIGvDd~Fi~~~~~~~~~~~~~~~er~~~~l~~~g~Sit 328 (798)
T PF02460_consen 249 PLLALAGVLSPLLAILASFGLLSLFGVPFNPIVLVIPFLVLGIGVDDMFIMIHAWRRTSPDLSVEERMAETLAEAGPSIT 328 (798)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHhceEEeHHHHhhhchhccHHHHHHHHHHHHHHHHH
Confidence 55677778888888899999999999999999999999999999999999999998864 4678999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccc
Q 007203 538 SGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPSRHII 597 (613)
Q Consensus 538 ~~~~ltt~~gf~~L~fs~~~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~~~~~~~~~ 597 (613)
.++ +|.+++|..-++++.|.++.|... ..+++++.++..++++|+++.+-+++..+++
T Consensus 329 iTs-lT~~~aF~ig~~t~~pav~~Fc~~-~a~av~f~~i~~it~f~a~l~l~~~re~~~~ 386 (798)
T PF02460_consen 329 ITS-LTNALAFAIGAITPIPAVRSFCIY-AALAVLFDFIYQITFFPAILVLDGRREAAGR 386 (798)
T ss_pred HHH-HHHHHHHHHHhcCCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 998 799999999999999999987433 3446889999999999999999876655544
No 65
>PRK08343 secD preprotein translocase subunit SecD; Reviewed
Probab=99.26 E-value=2.1e-10 Score=123.05 Aligned_cols=126 Identities=20% Similarity=0.194 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHHHHHH
Q 007203 436 RVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFL 515 (613)
Q Consensus 436 ~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l~i~~~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~~~~~ 515 (613)
+..+...+++++++++++++.+|.++..+...++++..+++++|+|.++|++||..++..+++++|++||+.|.+.++.+
T Consensus 261 ~~~l~a~ii~~ilVl~~m~~~yr~~~~i~~iaL~~~~~v~~~lg~l~l~g~tLtl~~IaGlIl~iGmaVD~~IvI~e~i~ 340 (417)
T PRK08343 261 KGSLIAGLLALLAVALVVFLRYREPRIALPMVITSLSEVIIILGFAALIGWQLDLASIAGIIAVIGTGVDDLIIITDEVL 340 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHHHHeeeCcEEEhHHHH
Confidence 34455666777777777777777766655444445566778899999999999999999999999999999999998776
Q ss_pred Hhc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH
Q 007203 516 VSH-GNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVY 562 (613)
Q Consensus 516 ~~~-~~~~~a~~~al~~~g~~v~~~~~ltt~~gf~~L~fs~~~~~~~f 562 (613)
++. .++++++++++++...|++.+. +||+++++||.+.....++.|
T Consensus 341 ~~~~~~~~~ai~~g~~~a~~~Il~t~-lTTiia~lpL~~~g~g~ikgf 387 (417)
T PRK08343 341 HEGKVPSRKVFLSRIKRAFFIIFAAA-ATTIAAMSPLAVMGLGDLKGF 387 (417)
T ss_pred HhCCccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccccch
Confidence 654 3678889999999999999998 799999999998765556654
No 66
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=99.17 E-value=3.7e-10 Score=126.31 Aligned_cols=163 Identities=19% Similarity=0.277 Sum_probs=129.2
Q ss_pred hhhHHHH---HHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhHhcc
Q 007203 428 FEQYLDI---WRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAV 504 (613)
Q Consensus 428 ~~~~~~i---~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l~i~~~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~V 504 (613)
+|+..-+ .++...++.=+.+++.+++++|+.|+|++++.++.++++++.+|-+|..+|++.|.+|.-.+.+++|+-|
T Consensus 323 ydRs~lid~AI~tv~k~LiEg~vlV~iVl~lFLgn~RsAli~~~~lPLS~li~f~~M~~~gi~~NlMSLGGlAIaiG~~V 402 (1027)
T COG3696 323 YDRSELIDKAIDTVSKTLIEGSVLVIIVLALFLGNFRSALIVIISLPLSLLIAFIVMNFFGISANLMSLGGLAIAIGAMV 402 (1027)
T ss_pred eeHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhcccchheeeeeee
Confidence 5554433 4456667777888889999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHH-HHH--h-c---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---chhHHHHHHHHHHHHHHHH
Q 007203 505 EFCVHIVHA-FLV--S-H---GNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFAR---SEIFVVYYFQMYLALVIIG 574 (613)
Q Consensus 505 D~sih~~~~-~~~--~-~---~~~~~a~~~al~~~g~~v~~~~~ltt~~gf~~L~fs~---~~~~~~f~~~~~~~~~~~~ 574 (613)
|.+|.+++. |++ + + .++-+.+.+|.+++++|++++- +-.++.|+|+..-. ..+|....+. ....++.+
T Consensus 403 D~AIV~vEN~~r~L~~~q~~~~~r~~~I~~a~~EV~~~v~f~~-lII~vvf~PIFtL~GvEGklF~Pma~t-~~~al~~a 480 (1027)
T COG3696 403 DAAIVVVENAHRRLEENQHTNATRFHVIYDASKEVGRPVFFGL-LIITVVFLPIFTLTGVEGKLFAPLAFT-KTYALLAA 480 (1027)
T ss_pred cceEEeehhHHHHhhhhccCCcchHHHHHHHHHHhhhhHhhhh-hhheeehhhhheeccccccccchHHHH-HHHHHHHH
Confidence 999999853 322 1 1 2466789999999999999986 45566788876443 3445444332 23347788
Q ss_pred HHHHHHHHHHHHHhhCCC
Q 007203 575 FLHGLVFLPVILSLFGPP 592 (613)
Q Consensus 575 l~~~l~~lP~ll~~~~~~ 592 (613)
++.++++.|+++.++-++
T Consensus 481 ~llsiT~iPal~~~~i~~ 498 (1027)
T COG3696 481 LLLSITFIPALMAYLIRG 498 (1027)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999999999998765
No 67
>PF12349 Sterol-sensing: Sterol-sensing domain of SREBP cleavage-activation
Probab=99.14 E-value=1.2e-09 Score=101.92 Aligned_cols=132 Identities=22% Similarity=0.342 Sum_probs=111.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcccchhHHH-HHHHHHhHhcccchhHHHHHHHHhc--CCHHHHHHHHHHHHHHHH
Q 007203 460 LWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSV-VNLIMSIGIAVEFCVHIVHAFLVSH--GNRNQRSQKALSTMGASV 536 (613)
Q Consensus 460 ~~~~~~~~l~i~~~~~~~~G~m~~~gi~ln~~s~-~~~~i~iGl~VD~sih~~~~~~~~~--~~~~~a~~~al~~~g~~v 536 (613)
+..++..++.+..++++.+|+.+++|++++++.. ...-+.+|+|+|+..++.+++.+.. .+.++|+.+++++.|+++
T Consensus 6 ~~L~~~~i~~v~~s~~~a~~i~~~~g~~~~~~~~e~~PFlvl~iG~dn~f~l~~~~~~~~~~~~~~~ri~~al~~~G~si 85 (153)
T PF12349_consen 6 FWLGLAGIVSVAFSVLFALGICSLFGVPFSLIPSEVLPFLVLGIGVDNMFVLARAVRRTPSSLPVPERIAEALSRVGPSI 85 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhHHH
Confidence 4556777778888899999999999999999887 6666889999999999999998864 356899999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 007203 537 FSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPS 593 (613)
Q Consensus 537 ~~~~~ltt~~gf~~L~fs~~~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~~~~~ 593 (613)
+.++ ++++++|..-.+++.+..++|. .....++++.++..+++.|++|++-.++.
T Consensus 86 ~~t~-l~~~~af~~~~~~~~~~l~~Fc-~faa~~l~~d~~l~~tff~avLsld~~r~ 140 (153)
T PF12349_consen 86 LLTS-LTEIVAFLIGAFSPVPALREFC-LFAALALLFDFLLQLTFFPAVLSLDLRRL 140 (153)
T ss_pred HHHH-HHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 7999999988899999999873 22334577889999999999999865443
No 68
>COG0341 SecF Preprotein translocase subunit SecF [Intracellular trafficking and secretion]
Probab=99.06 E-value=1e-08 Score=104.93 Aligned_cols=164 Identities=17% Similarity=0.240 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHH
Q 007203 432 LDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIV 511 (613)
Q Consensus 432 ~~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l~i~~~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~ 511 (613)
.++.++.+..++++++.+++-..+-|+ |+.++.++++.+-=++.++|+|.++|+++|..+..++.+.+|-|+|++|.+.
T Consensus 130 ~eL~~~~~~Al~~alv~I~iYV~~RFe-~~~a~aaI~al~hDvii~~g~~slfgiE~~l~~IAAlLtiIGYSvNDtIVvf 208 (305)
T COG0341 130 KELARQGLLALLLALVGILIYVFFRFE-WRFALAAILALLHDVIITLGFFSLFGIEFNLATIAALLTIIGYSVNDTIVVF 208 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeee-hHHHHHHHHHHHHHHHHHHHHHHHhheeecHHHHHHHHHHeeeccCCeEEEE
Confidence 345566677777777777766666555 6668888888888888899999999999999999999999999999999999
Q ss_pred HHHHHhc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007203 512 HAFLVSH-----GNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVIL 586 (613)
Q Consensus 512 ~~~~~~~-----~~~~~a~~~al~~~g~~v~~~~~ltt~~gf~~L~fs~~~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll 586 (613)
.|-+|.. .+..+.+..++.++-.-.+.++ +||++...+|.+-..+.+++|...+ +.+++.+...++++-+.++
T Consensus 209 DRIREn~r~~~~~~~~~iin~si~qTlsRti~Ts-~ttll~~~~l~~fgg~~l~~fa~~l-lvGii~gtySSifiA~pll 286 (305)
T COG0341 209 DRIRENLRKYRRETLREIINTSINQTLTRTINTS-VTTLLVVVALLLFGGGSLKDFALAL-LVGIIAGTYSSIFIAAPLL 286 (305)
T ss_pred hHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCchHHHHHHHHH-HHHHHHHHHhHHHHHHHHH
Confidence 9988853 2456888899988888888887 6889888888876778889885444 4568889999999999888
Q ss_pred HhhCCCCccccc
Q 007203 587 SLFGPPSRHIII 598 (613)
Q Consensus 587 ~~~~~~~~~~~~ 598 (613)
.+++.++++.+.
T Consensus 287 ~~~~~~~~~~~~ 298 (305)
T COG0341 287 LLLGKRREKKKA 298 (305)
T ss_pred HHHHHhHhhccc
Confidence 888776655444
No 69
>KOG1934 consensus Predicted membrane protein (patched superfamily) [General function prediction only]
Probab=99.05 E-value=3.4e-09 Score=122.29 Aligned_cols=138 Identities=15% Similarity=0.259 Sum_probs=119.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHHHHHHHhcC--CHHHHHHHHHHHHHHHH
Q 007203 459 SLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVSHG--NRNQRSQKALSTMGASV 536 (613)
Q Consensus 459 s~~~~~~~~l~i~~~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~~~~~~~~~--~~~~a~~~al~~~g~~v 536 (613)
.+..+++.+++-.++++..+|++.|+|.+.|.+..+..=+.+|+|||++-.+++.+++..+ +.++|+.+++.+.|++|
T Consensus 282 Kp~lai~g~l~p~mA~~ta~G~l~~~G~~f~sI~~v~PFLvl~IGVDD~Flml~aW~rt~~~~~~~~Rm~~~laeag~SI 361 (868)
T KOG1934|consen 282 KPILAILGVLSPVMAIITAFGLLFWCGFPFNSIVCVMPFLVLGIGVDDAFLMLAAWRRTSKKLSVEERMAETLAEAGPSI 361 (868)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHcCCCCcceeeecchheeeecccHHHHHHHHHHhcCccCCHHHHHHHHHHHhcCee
Confidence 4556677777777888889999999999999999988888999999999999999998753 68999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCccccc
Q 007203 537 FSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPSRHIII 598 (613)
Q Consensus 537 ~~~~~ltt~~gf~~L~fs~~~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~~~~~~~~~~ 598 (613)
..++ +|-+++|+.-++++.|.++.|-... ++.+++.++..+++..+++.+.+++..+.+.
T Consensus 362 tITS-lTn~lsFgiG~~T~~p~v~~FC~~~-a~Ai~f~fiYqlTFf~a~m~i~~~~E~~~~~ 421 (868)
T KOG1934|consen 362 TITS-LTNVLSFGIGAITPTPAVQIFCLYT-AVAILFDFIYQLTFFAAVMVITGRREANGRH 421 (868)
T ss_pred eHHH-HHHHHHHHhccCCCcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHhhcccC
Confidence 9998 7999999999999999999874333 3458899999999999999999876654444
No 70
>TIGR00966 3a0501s07 protein-export membrane protein SecF. This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein.
Probab=99.05 E-value=5.1e-10 Score=112.74 Aligned_cols=121 Identities=12% Similarity=0.224 Sum_probs=109.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhheeeeeccccHhHHHHHHHhc-C--CCCCHHHHHHHHHhhhh
Q 007203 24 VLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-P--MELVLETRISNALVEVG 100 (613)
Q Consensus 24 ~~l~~~~l~~~~~a~~~~~Gl~~~~g~~~~~~~~~~~p~l~l~igvd~~~~l~~~~~~~-~--~~~~~~~~i~~~l~~~g 100 (613)
...++..++++.++++.++|++.++|+++|. .+..-..+++|+.+||++++.++++|. + ++.++++++.++.++..
T Consensus 121 ~r~~l~v~~~ip~~l~~~~~~l~~~g~~ln~-~sl~gli~~iGi~Vdd~Ivv~d~i~e~~~~~~~~~~~~a~~~a~~~~~ 199 (246)
T TIGR00966 121 WRFALGAIVALVHDVIITVGVYSLFGIEVNL-TTVAALLTIIGYSINDTVVVFDRIRENLRKYTRKTFTEVINLSINQTL 199 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCcccH-HHHHHHHHHHHHhccCeEEEehHHHHHHhhccCCCHHHHHHHHHHHHH
Confidence 3457888999999999999999999999997 777777788899999999999999865 2 36789999999999999
Q ss_pred hHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHH
Q 007203 101 PSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVT 145 (613)
Q Consensus 101 ~~i~~tslTt~~~F~~~~~s~ip~ir~Fgi~~aigv~~~~v~~lt 145 (613)
.|++.|++||+++|+.+.+.+-+.+|.|++...+|++++.+.+++
T Consensus 200 ~~ii~ttltti~~flpl~~~~g~~~~~~a~~~~~Gli~~t~~sl~ 244 (246)
T TIGR00966 200 SRTINTSLTTLLAVLALYVFGGGVIKDFSLALLVGVIVGTYSSIF 244 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888899999999999999999888865
No 71
>PRK05812 secD preprotein translocase subunit SecD; Reviewed
Probab=99.05 E-value=5.3e-10 Score=122.38 Aligned_cols=127 Identities=16% Similarity=0.224 Sum_probs=116.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhheeeeeccccHhHHHHHHHhc-CCCCCHHHHHHHHHhhhhhHHH
Q 007203 26 LGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSIT 104 (613)
Q Consensus 26 l~~~~l~~~~~a~~~~~Gl~~~~g~~~~~~~~~~~p~l~l~igvd~~~~l~~~~~~~-~~~~~~~~~i~~~l~~~g~~i~ 104 (613)
.++.+.++..++++.++|++.++|.++|. ....--.+.+|+++|+.+++.++++|+ +++.+.++++.++.++++.+++
T Consensus 357 ~glia~iaL~~~v~~~l~~~~l~g~~l~l-~siaGlil~iG~~VD~~IVI~ErIreel~~g~~~~~Ai~~~~~~~~~~Il 435 (498)
T PRK05812 357 FGLIANIALVANLVLILAVLSLLGATLTL-PGIAGIVLTIGMAVDANVLIFERIREELREGRSLRSAIEAGFKRAFSTIL 435 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHCCCchH-HHHHHHHHhheeEEeceEEEeHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 57888899999999999999999999997 677777788999999999999999875 4577899999999999999999
Q ss_pred HHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007203 105 LASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEV 153 (613)
Q Consensus 105 ~tslTt~~~F~~~~~s~ip~ir~Fgi~~aigv~~~~v~~lt~~pall~~ 153 (613)
.|++||+++|+.+.+...+++|.|++...+|++++++.++++.|+++..
T Consensus 436 ~s~lTTlia~l~L~~~g~g~i~~fAitl~iGii~s~~~sl~vtp~l~~~ 484 (498)
T PRK05812 436 DSNITTLIAAIILYALGTGPVKGFAVTLGIGILTSMFTAITVTRALVNL 484 (498)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887778899999999999999999999999988763
No 72
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion]
Probab=99.01 E-value=1.5e-08 Score=110.91 Aligned_cols=156 Identities=16% Similarity=0.225 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHHHHH
Q 007203 435 WRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAF 514 (613)
Q Consensus 435 ~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l~i~~~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~~~~ 514 (613)
.+.-+...+++++++++++++.+| ..++++.+.+..-.+.++|.|.++|++|+...+..++++||++||.-|-+.+|.
T Consensus 342 i~~gi~Agl~g~~~V~vfm~~~Yr--~~Gvia~ial~~n~~lil~vls~lgatLtLpgIAGiILtIGmaVDaNVlI~ERI 419 (506)
T COG0342 342 IKAGLIAGLIGLALVAVFMLLYYR--LAGVIAAIALGLNGVLILAVLSLLGATLTLPGIAGIILTIGMAVDANVLIFERI 419 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHhhhhcccccEEeeHHH
Confidence 344556667888888888888888 677888888888889999999999999999999999999999999999999999
Q ss_pred HHhc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 007203 515 LVSH---GNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGP 591 (613)
Q Consensus 515 ~~~~---~~~~~a~~~al~~~g~~v~~~~~ltt~~gf~~L~fs~~~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~~~ 591 (613)
+||. ++..+++.+.+++....|+-+. +||+++..+|.+-....++-|.. +..++++.|++.++++.=.++.++-+
T Consensus 420 rEElr~G~s~~~ai~~G~~rAf~tI~DsN-~TTlia~~~L~~~GtG~vKGFA~-Tl~lGi~~smfta~~~tr~l~~~~~~ 497 (506)
T COG0342 420 REELRNGKSVLSAIDAGFKRAFSTILDSN-ATTLIAAAILFALGTGPVKGFAV-TLILGILTSMFTAIPVTRLLLNLLVG 497 (506)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHhccCCchHHHH-HHHHHHHHHhhhhHHHHHHHHHHHhc
Confidence 9984 3678899999999999999998 69999999998877777888754 44567899999999999888888765
Q ss_pred CCc
Q 007203 592 PSR 594 (613)
Q Consensus 592 ~~~ 594 (613)
..+
T Consensus 498 ~~~ 500 (506)
T COG0342 498 RRR 500 (506)
T ss_pred ccc
Confidence 544
No 73
>TIGR01129 secD protein-export membrane protein SecD. SecD from Mycobacterium tuberculosis has a long Pro-rich insert.
Probab=99.01 E-value=1.1e-09 Score=117.34 Aligned_cols=124 Identities=16% Similarity=0.224 Sum_probs=112.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhheeeeeccccHhHHHHHHHhc-CCCCCHHHHHHHHHhhhhhHHH
Q 007203 26 LGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSIT 104 (613)
Q Consensus 26 l~~~~l~~~~~a~~~~~Gl~~~~g~~~~~~~~~~~p~l~l~igvd~~~~l~~~~~~~-~~~~~~~~~i~~~l~~~g~~i~ 104 (613)
.++.+.+...+.++.++|++.++|.++|. ....--.+.+|+++||.+++.++++|+ +++.+.++++.++.++++.+++
T Consensus 272 ~gl~a~ial~~~v~~~l~~~~l~g~~l~l-~siaglil~iG~~VD~~Ivi~erire~l~~g~~~~~Ai~~~~~~~~~~I~ 350 (397)
T TIGR01129 272 FGLIAAIALVINIVLILAILSAFGATLTL-PGIAGLILTIGMAVDANVLIYERIKEELRLGKSVRQAIEAGFERAFSTIF 350 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHhheeeeceEEEeHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 57788889999999999999999999997 666666778899999999999999876 4567899999999999999999
Q ss_pred HHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007203 105 LASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVAL 150 (613)
Q Consensus 105 ~tslTt~~~F~~~~~s~ip~ir~Fgi~~aigv~~~~v~~lt~~pal 150 (613)
.|++||+++|+.+.+...+.+|.|++...+|++++++.++++.+.+
T Consensus 351 ~s~lTtlia~l~L~~~g~g~~~~fA~tl~igii~s~~~sl~vtr~~ 396 (397)
T TIGR01129 351 DANITTLIAALILYVFGTGPVKGFAVTLAIGIIASLFTALVFTRLL 396 (397)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999887778899999999999999999999887654
No 74
>PRK08578 preprotein translocase subunit SecF; Reviewed
Probab=98.88 E-value=1.1e-08 Score=105.44 Aligned_cols=123 Identities=12% Similarity=0.176 Sum_probs=103.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhheeeeeccccHhHHHHHHHhcCCCCCHHHHHHHHHhhhhhHH
Q 007203 24 VLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSI 103 (613)
Q Consensus 24 ~~l~~~~l~~~~~a~~~~~Gl~~~~g~~~~~~~~~~~p~l~l~igvd~~~~l~~~~~~~~~~~~~~~~i~~~l~~~g~~i 103 (613)
.+.++..+++....+++++|++.++|+++|. .+...-..++|+++||++++.+++++.. .+.+|++.+++++.
T Consensus 158 ~~~~l~~~lal~~dv~~tlg~~~l~g~~ln~-~~i~gll~iiG~sVdd~IVv~dri~~~~--~~~~eai~~a~~~~---- 230 (292)
T PRK08578 158 PVPSLAVILSAFSDIIIALALMNLFGIELSL-ATVAALLMLIGYSVDSDILLTTRVLKRR--GTFDESIKRAMRTG---- 230 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCccccH-HHHHHHHHHHheeecCcEEEehHHHHcc--CCHHHHHHHHHHHH----
Confidence 4667788888899999999999999999998 4444444668999999999999997653 57889999988553
Q ss_pred HHHHHHHHHHHHhhccc----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007203 104 TLASLSEFLAFAVGSFI----PMPACRVFSMFAALAVLLDFFLQVTAFVALIEV 153 (613)
Q Consensus 104 ~~tslTt~~~F~~~~~s----~ip~ir~Fgi~~aigv~~~~v~~lt~~pall~~ 153 (613)
..+++||+++|+.+.+. +.+.+|+|++...+|++++++.++++-++++..
T Consensus 231 i~tslTTl~~~lpL~l~~~~~g~~~~~~fal~l~~Gli~s~~~tl~~~~~~l~~ 284 (292)
T PRK08578 231 ITMTLTTIAAMAVLYIVSTIPQAEVLANIAAVLIFGLLADLMNTWLLNAGILRW 284 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999998644 578999999999999999999999999988853
No 75
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents bacterial SecD and SecF protein export membrane proteins and their archaeal homologues []. It is found in association with PF07549 from PFAM SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=98.85 E-value=3.5e-08 Score=95.03 Aligned_cols=131 Identities=17% Similarity=0.230 Sum_probs=110.8
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhheeeeeccccHhHHHHHHHhcC---CCCCHHHHHHHHHh
Q 007203 21 SSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP---MELVLETRISNALV 97 (613)
Q Consensus 21 ~s~~~l~~~~l~~~~~a~~~~~Gl~~~~g~~~~~~~~~~~p~l~l~igvd~~~~l~~~~~~~~---~~~~~~~~i~~~l~ 97 (613)
|-|...++.+++.....++.++|++.++|.++|. .....-.+++|.++||.+.+.+|.+|+. ++.+.++++.++++
T Consensus 51 rf~~~~~~~aii~l~~dv~i~l~~~~~~~~~l~l-~~iaall~~iG~sVd~~IVifdRIre~~~~~~~~~~~~~~~~s~~ 129 (189)
T PF02355_consen 51 RFRWRFALAAIIALIHDVLITLGIFSLFGIELTL-PSIAALLTIIGYSVDDNIVIFDRIREELRASRGKSLREAINISIK 129 (189)
T ss_dssp HCTHHHHHHHHHHHHHHHHHHHHHHHHHT-EE-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-STS-HHHHHHHHHH
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHCCcccH-HHHHHHHHHHHHHHhcceeehHHHHHHhhhCCCCCHHHHHHHHHH
Confidence 3343457778888888899999999999999997 6666667788999999999999999872 46789999999999
Q ss_pred hhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007203 98 EVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (613)
Q Consensus 98 ~~g~~i~~tslTt~~~F~~~~~s~ip~ir~Fgi~~aigv~~~~v~~lt~~pall~ 152 (613)
++......|++||.+....+.+..-+++|+|+....+|++.+...++.+-++++.
T Consensus 130 ~tl~r~i~t~~ttll~~~~L~~~g~~~l~~Fa~~l~iGvi~~~~ss~~ia~~l~~ 184 (189)
T PF02355_consen 130 QTLSRTIDTSLTTLLAALILFFFGGGSLKGFALTLIIGVIIGTYSSLFIARPLLY 184 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988999999999999999999999888777663
No 76
>COG4258 Predicted exporter [General function prediction only]
Probab=98.77 E-value=2.7e-07 Score=99.06 Aligned_cols=166 Identities=13% Similarity=0.161 Sum_probs=116.7
Q ss_pred cccccccceeeehhhHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHH-HHHHHHHHHhcccchhHHH
Q 007203 416 INIFPYSVFYIFFEQYL-DIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIV-IDLLGVMAILGIQLNAVSV 493 (613)
Q Consensus 416 ~~~~~~g~~~~~~~~~~-~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l~i~~~~-~~~~G~m~~~gi~ln~~s~ 493 (613)
.+...+|..+ |.+... ...++.-..-..+.+.+.+.+++.|||++.-++-++++.+.. .++...|-.+| ++.-+|.
T Consensus 236 ~ql~~tGp~f-yA~~ar~~~~~d~~~lg~as~~giilLll~vfRS~RvllLgvls~gig~laglvAt~laFg-~lH~lTl 313 (788)
T COG4258 236 AQLLSTGPVF-YADYARQQAKQDISTLGVASLLGIILLLLAVFRSLRVLLLGVLSIGIGALAGLVATLLAFG-ELHLLTL 313 (788)
T ss_pred hhhhhcCCee-eeHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHhchhHHHHHHHHhhHHHHHHHHHHHHHHh-hHhHHHH
Confidence 4455566644 444333 344443333334555666667788999999988888886554 44566777777 8888999
Q ss_pred HHHHHHhHhcccchhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH-HHHH
Q 007203 494 VNLIMSIGIAVEFCVHIVHAFLVSHGNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYL-ALVI 572 (613)
Q Consensus 494 ~~~~i~iGl~VD~sih~~~~~~~~~~~~~~a~~~al~~~g~~v~~~~~ltt~~gf~~L~fs~~~~~~~f~~~~~~-~~~~ 572 (613)
+...-.||.++||+||+....+.- |++.+.. +..++.-+.+..+- +||++|+..+.|++++-++... ++. .++.
T Consensus 314 ~fg~slIGeAvDYsI~yfv~h~~p-G~~~dp~-rsaaev~paL~lal-lTtvlayatmlfs~fpgLrQLa--~faivGL~ 388 (788)
T COG4258 314 VFGMSLIGEAVDYSIYYFVEHMVP-GNDVDPW-RSAAEVRPALLLAL-LTTVLAYATMLFSPFPGLRQLA--IFAIVGLL 388 (788)
T ss_pred HhhhhheeecccceeeehhhccCC-CCCCChh-HHHHHhhHHHHHHH-HHHHHHHHHHHhcCChhHHHHH--HHHHHHHH
Confidence 888889999999999998644332 2222222 23677777777775 7999999999999999998862 332 3477
Q ss_pred HHHHHHHHHHHHHHHh
Q 007203 573 IGFLHGLVFLPVILSL 588 (613)
Q Consensus 573 ~~l~~~l~~lP~ll~~ 588 (613)
.+.+...+++|.++-=
T Consensus 389 aAaltvrfllP~L~~~ 404 (788)
T COG4258 389 AAALTVRFLLPWLCRG 404 (788)
T ss_pred HHHHHHHHhhhhhcCC
Confidence 7889999999998754
No 77
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=98.75 E-value=3.4e-08 Score=108.98 Aligned_cols=127 Identities=19% Similarity=0.208 Sum_probs=113.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh-ccccchhhhhhhhheeeeeccccHhHHHHHHHhc-CCCCCHHHHHHHHHhhhhhHH
Q 007203 26 LGLSGVILVMLSVLGSVGFFSAI-GVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSI 103 (613)
Q Consensus 26 l~~~~l~~~~~a~~~~~Gl~~~~-g~~~~~~~~~~~p~l~l~igvd~~~~l~~~~~~~-~~~~~~~~~i~~~l~~~g~~i 103 (613)
.++.+.+...+.++.++|++.++ |.++|. ....--.+.+|+.+|+.+++.++.+|+ +++.+..+++..+.+++..++
T Consensus 464 ~glva~iAL~~~l~l~l~vmsll~G~tLtL-pgIAGiILtIGmaVDanIVI~ERIrEel~~G~s~~~Ai~~G~~~a~~~I 542 (604)
T PRK12933 464 LGWVANVALIANMVCLFGLLALIPGAVLTL-PGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFAQAIDTGFDSAFSTI 542 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcccH-HHHHHHHHHHHhhccCcEEEehHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 36777788889999999999998 999997 666666777899999999999999886 456788999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007203 104 TLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEV 153 (613)
Q Consensus 104 ~~tslTt~~~F~~~~~s~ip~ir~Fgi~~aigv~~~~v~~lt~~pall~~ 153 (613)
+.+++||+++|+.+.+..-.++|.|++..++|++.+++.++++-|+++..
T Consensus 543 ldanlTTlia~lpL~~~Ggg~ikgFAvTL~iGIl~S~ftAi~vtr~l~~~ 592 (604)
T PRK12933 543 FDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMFTGIFASRALINL 592 (604)
T ss_pred HHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887777899999999999999999999999987753
No 78
>KOG1935 consensus Membrane protein Patched/PTCH [Signal transduction mechanisms]
Probab=98.68 E-value=5.1e-07 Score=99.98 Aligned_cols=132 Identities=17% Similarity=0.275 Sum_probs=109.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccchhHH-HHHHHHHhHhcccchhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 007203 461 WSSAIILVVLVMIVIDLLGVMAILGIQLNAVS-VVNLIMSIGIAVEFCVHIVHAFLVSHGNRNQRSQKALSTMGASVFSG 539 (613)
Q Consensus 461 ~~~~~~~l~i~~~~~~~~G~m~~~gi~ln~~s-~~~~~i~iGl~VD~sih~~~~~~~~~~~~~~a~~~al~~~g~~v~~~ 539 (613)
..++.-++.+.++.+..+|+-.|+||.+|..| -+..-+++|+|||+---+.|.|.|..+. ++++.+.++++|.+|+.+
T Consensus 442 ~vglaGVllv~~ssaaGLGl~t~lGI~FNAAtTQVvPFLaLGlGVDd~FlL~hay~e~~~~-~~~~~~~lk~tG~Svl~t 520 (1143)
T KOG1935|consen 442 SVGLAGVLLVTFSSAAGLGLATLLGIEFNAATTQVVPFLALGLGVDDMFLLLHAYREVVKL-HEEMGELLKETGMSVLLT 520 (1143)
T ss_pred chhhhhhhhhhhHhhcchhHHHHhceeeccccceeehhhhhccChhHHHHHHHHHHHHhhh-HHHHHHHHHHhCcchhHH
Confidence 34555566667777778999999999999975 5778889999999999999999886433 789999999999999999
Q ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcc
Q 007203 540 ITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPSRH 595 (613)
Q Consensus 540 ~~ltt~~gf~~L~fs~~~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~~~~~~~ 595 (613)
+ +.++++|+.-++.+.|..+.|-.. .++++.+.++..+++.|+++++=-+++++
T Consensus 521 s-inni~aF~~aallPIPALrsFclQ-aaIvl~fnfia~llifPAiisiDLrRr~~ 574 (1143)
T KOG1935|consen 521 S-INNILAFLMAALLPIPALRSFCLQ-AAIVLTFNFIAVLLIFPAIISIDLRRRKA 574 (1143)
T ss_pred H-hhhHHHHHHHhhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence 8 699999999999999999987433 34457788999999999999985444433
No 79
>PRK13021 secF preprotein translocase subunit SecF; Reviewed
Probab=98.66 E-value=8.9e-08 Score=98.26 Aligned_cols=127 Identities=13% Similarity=0.155 Sum_probs=112.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhheeeeeccccHhHHHHHHHhcC---CCCCHHHHHHHHHhhhh
Q 007203 24 VLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP---MELVLETRISNALVEVG 100 (613)
Q Consensus 24 ~~l~~~~l~~~~~a~~~~~Gl~~~~g~~~~~~~~~~~p~l~l~igvd~~~~l~~~~~~~~---~~~~~~~~i~~~l~~~g 100 (613)
...++..+++...+++.++|.+.++|.++|. ...+--..++|+.++|.+++.++++|.. ++.+.+|++.++.++.-
T Consensus 149 ~~~~l~al~al~~dv~~~l~~l~l~g~~l~~-~~iaglLtliG~svnd~IVi~drire~~~~~~~~~~~e~i~~ai~~~l 227 (297)
T PRK13021 149 WRLASGALFALVHDVIFVLAFFALTQMEFNL-TVLAAVLAILGYSLNDSIIIADRIRELLIAKPKLAIQEINNQAIVATF 227 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHeeeCCEEEeeHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 4457778889999999999999999999997 6666667788999999999999999753 46789999999999999
Q ss_pred hHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007203 101 PSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI 151 (613)
Q Consensus 101 ~~i~~tslTt~~~F~~~~~s~ip~ir~Fgi~~aigv~~~~v~~lt~~pall 151 (613)
.++++|++||+++.+.+.+..-+.+|.|++....|++.....++.+-++++
T Consensus 228 rr~l~TslTt~l~llpL~l~G~~~~~~fA~~li~Gli~gt~sslfva~pl~ 278 (297)
T PRK13021 228 SRTMVTSGTTLMTVGALWIMGGGPLEGFSIAMFIGILTGTFSSISVGTSLP 278 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888899999999999999999999988766654
No 80
>PRK08343 secD preprotein translocase subunit SecD; Reviewed
Probab=98.33 E-value=2.6e-06 Score=91.73 Aligned_cols=116 Identities=18% Similarity=0.214 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHhhccccchhhhhhhhheeeeeccccHhHHHHHHHhcCCCCCHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 007203 34 VMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLASLSEFLA 113 (613)
Q Consensus 34 ~~~a~~~~~Gl~~~~g~~~~~~~~~~~p~l~l~igvd~~~~l~~~~~~~~~~~~~~~~i~~~l~~~g~~i~~tslTt~~~ 113 (613)
....+++.+|++.++|.++|. ....--.+.+|+++|+.+++.++.+++.+ .+.++++...++++..+++.|++||+++
T Consensus 295 ~~~~v~~~lg~l~l~g~tLtl-~~IaGlIl~iGmaVD~~IvI~e~i~~~~~-~~~~~ai~~g~~~a~~~Il~t~lTTiia 372 (417)
T PRK08343 295 SLSEVIIILGFAALIGWQLDL-ASIAGIIAVIGTGVDDLIIITDEVLHEGK-VPSRKVFLSRIKRAFFIIFAAAATTIAA 372 (417)
T ss_pred HHHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHeeeCcEEEhHHHHHhCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677889999999999997 67777778889999999999987765432 3678889999999999999999999999
Q ss_pred HHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007203 114 FAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI 151 (613)
Q Consensus 114 F~~~~~s~ip~ir~Fgi~~aigv~~~~v~~lt~~pall 151 (613)
++.+.+.....+|.|++...+|++++.+.+=..+--++
T Consensus 373 ~lpL~~~g~g~ikgfAitliiGii~s~~iTrp~~~~~~ 410 (417)
T PRK08343 373 MSPLAVMGLGDLKGFAITTILGVLIGVLITRPAYGDII 410 (417)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998777778999999999999997666654444433
No 81
>KOG3664 consensus Predicted patched transmembrane receptor [Signal transduction mechanisms]
Probab=98.22 E-value=5.8e-07 Score=102.52 Aligned_cols=133 Identities=20% Similarity=0.345 Sum_probs=114.4
Q ss_pred ccc-cchhhHHHHHHHHHHHHHHHHHHHH-hhccccchhhhhhhhheeeeeccccHhHHHHHHHhcC-------------
Q 007203 19 YVS-SKVLLGLSGVILVMLSVLGSVGFFS-AIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP------------- 83 (613)
Q Consensus 19 ~v~-s~~~l~~~~l~~~~~a~~~~~Gl~~-~~g~~~~~~~~~~~p~l~l~igvd~~~~l~~~~~~~~------------- 83 (613)
+++ +.++..+++...+.++...++++.. .+|+.+-+.++.+.-++++|||.||+|.+.+.|+|..
T Consensus 343 ~i~t~s~f~tf~~~~~i~ls~~~a~f~y~vv~~i~~fp~lnlv~~vv~i~Ig~dd~fl~~~~~~~~~~r~l~~~~~~~~~ 422 (999)
T KOG3664|consen 343 WIYTGSAFITFMSIVAICLSLGVALFFYAVVLGIDFFPYLNLVAVVVIIGIGADDVFLFLKIYERSNLRMLHTQSQSASF 422 (999)
T ss_pred EEecCcHHHHHHHHHHHHHHhhHHHhhheeeehhhhhhhhhhhheeeeeecccccceeehhhhhhhhHHHHHHHHhhccc
Confidence 344 4778899999999999999998887 4678877767778888999999999999999994421
Q ss_pred ------CCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007203 84 ------MELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI 151 (613)
Q Consensus 84 ------~~~~~~~~i~~~l~~~g~~i~~tslTt~~~F~~~~~s~ip~ir~Fgi~~aigv~~~~v~~lt~~pall 151 (613)
.....+......+.+...+|++|++||+++|.+...+|++.+|.||++++.++.+++...++++||..
T Consensus 423 ~~~l~~~~~ll~~~~~l~~~h~~~smfvt~~~t~~~f~~~~ssp~~~lrcfg~~A~~~v~~n~~~~v~~lPa~~ 496 (999)
T KOG3664|consen 423 FLELSDHTELLENVFALTLRHASFSMFVTSLTTACAFYANYSSPVIVLRCFGIFAGLTVVFNYLLVVLWLPASV 496 (999)
T ss_pred ccccccchhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhccccchHHHHHhccccccccccccceeEEeccchh
Confidence 01235666778899999999999999999999999999999999999999999999999999999943
No 82
>COG0341 SecF Preprotein translocase subunit SecF [Intracellular trafficking and secretion]
Probab=98.16 E-value=1.5e-05 Score=81.83 Aligned_cols=134 Identities=11% Similarity=0.206 Sum_probs=114.6
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhheeeeeccccHhHHHHHHHhcC---CCCCHHHHHHHHH
Q 007203 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP---MELVLETRISNAL 96 (613)
Q Consensus 20 v~s~~~l~~~~l~~~~~a~~~~~Gl~~~~g~~~~~~~~~~~p~l~l~igvd~~~~l~~~~~~~~---~~~~~~~~i~~~l 96 (613)
+|-+...++.++++.+-=++.++|++.++|+++|. .....-.-++|-+++|.+++.+|.||.. +..+..|.+..++
T Consensus 153 ~RFe~~~a~aaI~al~hDvii~~g~~slfgiE~~l-~~IAAlLtiIGYSvNDtIVvfDRIREn~r~~~~~~~~~iin~si 231 (305)
T COG0341 153 FRFEWRFALAAILALLHDVIITLGFFSLFGIEFNL-ATIAALLTIIGYSVNDTIVVFDRIRENLRKYRRETLREIINTSI 231 (305)
T ss_pred eeeehHHHHHHHHHHHHHHHHHHHHHHHhheeecH-HHHHHHHHHeeeccCCeEEEEhHHHHHHhhhccCCHHHHHHHHH
Confidence 45555568888888888899999999999999997 5555556677888999999999999854 3566778999999
Q ss_pred hhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007203 97 VEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVH 154 (613)
Q Consensus 97 ~~~g~~i~~tslTt~~~F~~~~~s~ip~ir~Fgi~~aigv~~~~v~~lt~~pall~~~ 154 (613)
..+-.-...|++||.+...++.+-.-+.+++|++..-+|++.....++.+-++++..+
T Consensus 232 ~qTlsRti~Ts~ttll~~~~l~~fgg~~l~~fa~~llvGii~gtySSifiA~pll~~~ 289 (305)
T COG0341 232 NQTLTRTINTSVTTLLVVVALLLFGGGSLKDFALALLVGIIAGTYSSIFIAAPLLLLL 289 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999999999999988888777799999999999999999999988877777443
No 83
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion]
Probab=98.07 E-value=1.3e-05 Score=88.11 Aligned_cols=127 Identities=16% Similarity=0.176 Sum_probs=113.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhheeeeeccccHhHHHHHHHhc-CCCCCHHHHHHHHHhhhhhHH
Q 007203 25 LLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSI 103 (613)
Q Consensus 25 ~l~~~~l~~~~~a~~~~~Gl~~~~g~~~~~~~~~~~p~l~l~igvd~~~~l~~~~~~~-~~~~~~~~~i~~~l~~~g~~i 103 (613)
..++.+.+...+..+..+|++.++|.+++. ....-.++.+|.++|.-+.+..|.+|+ +.+.+.++++...++++...|
T Consensus 366 ~~Gvia~ial~~n~~lil~vls~lgatLtL-pgIAGiILtIGmaVDaNVlI~ERIrEElr~G~s~~~ai~~G~~rAf~tI 444 (506)
T COG0342 366 LAGVIAAIALGLNGVLILAVLSLLGATLTL-PGIAGIILTIGMAVDANVLIFERIREELRNGKSVLSAIDAGFKRAFSTI 444 (506)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhcccccc-hhhhHHHHhhhhcccccEEeeHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 557788888888999999999999999997 666667788888899999999999976 557899999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007203 104 TLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (613)
Q Consensus 104 ~~tslTt~~~F~~~~~s~ip~ir~Fgi~~aigv~~~~v~~lt~~pall~ 152 (613)
+=+.+||+++=..+..-...++|-|++..++|++.+.+.++++.-.+++
T Consensus 445 ~DsN~TTlia~~~L~~~GtG~vKGFA~Tl~lGi~~smfta~~~tr~l~~ 493 (506)
T COG0342 445 LDSNATTLIAAAILFALGTGPVKGFAVTLILGILTSMFTAIPVTRLLLN 493 (506)
T ss_pred HHhchHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887655554
No 84
>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase.
Probab=97.97 E-value=9.6e-05 Score=84.16 Aligned_cols=131 Identities=13% Similarity=0.131 Sum_probs=106.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHHHHHH-Hh--cCCHHHHHHHHHHHHHHH
Q 007203 459 SLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFL-VS--HGNRNQRSQKALSTMGAS 535 (613)
Q Consensus 459 s~~~~~~~~l~i~~~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~~~~~-~~--~~~~~~a~~~al~~~g~~ 535 (613)
.+..++.-++.+.++++...|++.++|++++.+.-++.-+.++++||+.--+.+ ++ .. +.+.++|+.+++.+.|++
T Consensus 89 K~~LGlaGV~~V~~Svv~S~Gl~s~lG~~~t~I~eViPFLvLaIGVDnifiLa~-~~~~t~~~~~v~eRIa~~l~~vGpS 167 (886)
T TIGR00920 89 KYILGIAGLFTIFSSFVFSTAVIHFLGSELTGLNEALPFFLLLIDLSKASALAK-FALSSNSQDEVRDNIARGMAILGPT 167 (886)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhHHHhhhchhhHHHHHh-hhhccCCCCCHHHHHHHHHHHhccc
Confidence 344567778888899999999999999999998767777777888999877754 44 21 236789999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 007203 536 VFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPP 592 (613)
Q Consensus 536 v~~~~~ltt~~gf~~L~fs~~~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~~~~ 592 (613)
++.++ +|-.+.|..=.+++.+-++.|. ...+..+++.++.-++++|++|++.+..
T Consensus 168 Itlts-lte~l~F~vGtls~mPAV~~Fc-~ya~vAVl~nyllQmTfF~A~LsL~~~l 222 (886)
T TIGR00920 168 ITLDT-VVETLVIGVGTMSGVRRLEVLC-CFGCMSVLANYFVFMTFFPACLSLVLEL 222 (886)
T ss_pred eeHHH-HHHHHHHHHhccCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998 6999999999999999888863 2223457888999999999999987654
No 85
>KOG3664 consensus Predicted patched transmembrane receptor [Signal transduction mechanisms]
Probab=74.32 E-value=1 Score=52.84 Aligned_cols=133 Identities=17% Similarity=0.246 Sum_probs=84.7
Q ss_pred HHhhcCchhHHHHHHHHHHHHHHHHHHHH-Hhcccch-hHHHHHHHHHhHhcccchhHHHHHHHHhc----------C--
Q 007203 454 LLMTSSLWSSAIILVVLVMIVIDLLGVMA-ILGIQLN-AVSVVNLIMSIGIAVEFCVHIVHAFLVSH----------G-- 519 (613)
Q Consensus 454 ~l~~~s~~~~~~~~l~i~~~~~~~~G~m~-~~gi~ln-~~s~~~~~i~iGl~VD~sih~~~~~~~~~----------~-- 519 (613)
.+..+|+..+++....+.+......++-. .+|+.+= .+..+...+.||++.|+...+...|.++. +
T Consensus 343 ~i~t~s~f~tf~~~~~i~ls~~~a~f~y~vv~~i~~fp~lnlv~~vv~i~Ig~dd~fl~~~~~~~~~~r~l~~~~~~~~~ 422 (999)
T KOG3664|consen 343 WIYTGSAFITFMSIVAICLSLGVALFFYAVVLGIDFFPYLNLVAVVVIIGIGADDVFLFLKIYERSNLRMLHTQSQSASF 422 (999)
T ss_pred EEecCcHHHHHHHHHHHHHHhhHHHhhheeeehhhhhhhhhhhheeeeeecccccceeehhhhhhhhHHHHHHHHhhccc
Confidence 34447777777777777766655543332 3444433 34456677789999999999888883310 0
Q ss_pred ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhh
Q 007203 520 ---------NRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLA-LVIIGFLHGLVFLPVILSLF 589 (613)
Q Consensus 520 ---------~~~~a~~~al~~~g~~v~~~~~ltt~~gf~~L~fs~~~~~~~f~~~~~~~-~~~~~l~~~l~~lP~ll~~~ 589 (613)
.........+.+....++.+. +||+.+|.....++...++-| ++++. .+..+...-...+|+..++.
T Consensus 423 ~~~l~~~~~ll~~~~~l~~~h~~~smfvt~-~~t~~~f~~~~ssp~~~lrcf--g~~A~~~v~~n~~~~v~~lPa~~SI~ 499 (999)
T KOG3664|consen 423 FLELSDHTELLENVFALTLRHASFSMFVTS-LTTACAFYANYSSPVIVLRCF--GIFAGLTVVFNYLLVVLWLPASVSIA 499 (999)
T ss_pred ccccccchhHHHHHHhhhhhhhhHHHHHHH-HHHHhhhhhccccchHHHHHh--ccccccccccccceeEEeccchhhhh
Confidence 012334445667777788887 799999999988887777754 44443 24455555566778744443
No 86
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=66.97 E-value=25 Score=33.54 Aligned_cols=18 Identities=28% Similarity=0.573 Sum_probs=10.7
Q ss_pred hhHHHhhhHHHHhhCCCc
Q 007203 337 TEQFREKLPWFLNALPSA 354 (613)
Q Consensus 337 ~~~f~~~l~~~l~~~p~~ 354 (613)
+++|.+.|+.+++..|..
T Consensus 3 k~efL~~L~~~L~~lp~~ 20 (181)
T PF08006_consen 3 KNEFLNELEKYLKKLPEE 20 (181)
T ss_pred HHHHHHHHHHHHHcCCHH
Confidence 456666666666655543
No 87
>COG4709 Predicted membrane protein [Function unknown]
Probab=57.83 E-value=73 Score=30.48 Aligned_cols=17 Identities=29% Similarity=0.614 Sum_probs=10.6
Q ss_pred hhHHHhhhHHHHhhCCC
Q 007203 337 TEQFREKLPWFLNALPS 353 (613)
Q Consensus 337 ~~~f~~~l~~~l~~~p~ 353 (613)
..+|.+.|+.+++.+|.
T Consensus 3 k~efL~eL~~yL~~Lp~ 19 (195)
T COG4709 3 KTEFLNELEQYLEGLPR 19 (195)
T ss_pred HHHHHHHHHHHHHhCCH
Confidence 34566666667766664
No 88
>KOG1933 consensus Cholesterol transport protein (Niemann-Pick C disease protein) [Lipid transport and metabolism]
Probab=43.59 E-value=5.6 Score=48.34 Aligned_cols=118 Identities=17% Similarity=0.291 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHhcccchhHHHHHH-HHHhHhcccchhHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHHHHHHHH
Q 007203 470 LVMIVIDLLGVMAILGIQLNAVSVVNL-IMSIGIAVEFCVHIVHAFLVSH----GNRNQRSQKALSTMGASVFSGITLTK 544 (613)
Q Consensus 470 i~~~~~~~~G~m~~~gi~ln~~s~~~~-~i~iGl~VD~sih~~~~~~~~~----~~~~~a~~~al~~~g~~v~~~~~ltt 544 (613)
....+...+|+-.++|++...+-+-.+ .+.+.++||+---++++|++.. .+.++++-.++.++|+.++.++ ++-
T Consensus 592 vl~sv~~S~g~FS~~gi~~t~i~i~VipflVlavgvdnifilv~~~qr~~~~~~~~~~~~I~~~l~~~~Psil~~s-lse 670 (1201)
T KOG1933|consen 592 VLLSVVCSVGFFSYLGITSTLIIIEVIPFLVLAVGVDNIFILVHTYQRDGRSKSEPLEQRIGSVLGEVGPSILLSS-LSE 670 (1201)
T ss_pred EeechhhhhhHHHhhcchhhheeeeeeeeEEEEEeeccEEEEEeeecccccccCCCcccccchhhhccCcHHHHhH-HHh
Confidence 344566678899999998776554332 3445566899888888887653 2467899999999999999887 577
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 007203 545 LVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPP 592 (613)
Q Consensus 545 ~~gf~~L~fs~~~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~~~~ 592 (613)
..+|..-+++..+..+.| .+... +.-++-.+.=+++.+.++...
T Consensus 671 ~~~ff~g~~~~mPav~~f--al~a~--lavLld~llq~t~fv~l~~~D 714 (1201)
T KOG1933|consen 671 NFCFFLGAFVDMPAVRVF--ALYAG--LAVLLDFLLQITAFVALIVLD 714 (1201)
T ss_pred hhHHhhhhcccCcceeee--HHHHH--HHHHHHHHHHHhhhhhccccc
Confidence 777776678888887765 33322 112344444466666666544
No 89
>PF09946 DUF2178: Predicted membrane protein (DUF2178); InterPro: IPR019235 This entry, found in various hypothetical bacterial and archaeal proteins, has no known function, but contains several predicted transmembrane helices.
Probab=36.74 E-value=2.1e+02 Score=25.00 Aligned_cols=20 Identities=10% Similarity=0.087 Sum_probs=12.4
Q ss_pred cCchHHHHHHHHHHHHHHHH
Q 007203 120 IPMPACRVFSMFAALAVLLD 139 (613)
Q Consensus 120 s~ip~ir~Fgi~~aigv~~~ 139 (613)
.+.|..++.+...+..+.+.
T Consensus 88 ~~~p~~~~a~~~l~~~~~~~ 107 (111)
T PF09946_consen 88 NSYPEYTDAGFVLAFSLAFM 107 (111)
T ss_pred ccChhHhHHHHHHHHHHHHH
Confidence 36777777776655555443
No 90
>COG3301 NrfD Formate-dependent nitrite reductase, membrane component [Inorganic ion transport and metabolism]
Probab=24.84 E-value=2.4e+02 Score=28.95 Aligned_cols=98 Identities=19% Similarity=0.149 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhheeeeeccccH---hHHHHHHHhcCCCCCHHHHHHHHHhhhhhHH
Q 007203 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNM---CILVNAVKRQPMELVLETRISNALVEVGPSI 103 (613)
Q Consensus 27 ~~~~l~~~~~a~~~~~Gl~~~~g~~~~~~~~~~~p~l~l~igvd~~---~~l~~~~~~~~~~~~~~~~i~~~l~~~g~~i 103 (613)
.++.++.+.++.-+++=+-...|+|+=. +-.+|.|-+.-|++-+ ..+....++. .++++.-.+.+.+...++
T Consensus 136 iL~~i~gi~~~aYTGflLaa~~giPFwN--np~LPvLfL~sg~sag~a~~~L~~lv~~~---~~~~~~~~~~~~r~~~~v 210 (305)
T COG3301 136 ILMAILGVLLGAYTGFLLAALKGIPFWN--NPALPVLFLFSGLSAGSAALILLMLVRTR---ENPHSTESKFLHRFEIPV 210 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCccc--CchhHHHHHHhhhhhhHHHHHHHHHHhcC---CCccchhhHHHHHHHHHH
Confidence 3444455555555666666678898643 4678887777766543 2333333322 234455567888999999
Q ss_pred HHHHHHHHHHHHhhc-ccCchHHHHHH
Q 007203 104 TLASLSEFLAFAVGS-FIPMPACRVFS 129 (613)
Q Consensus 104 ~~tslTt~~~F~~~~-~s~ip~ir~Fg 129 (613)
..+-+-...+|..+. +-+.-..|.+.
T Consensus 211 ~~~ell~la~f~~l~~~G~~a~~~a~~ 237 (305)
T COG3301 211 VVTELLLLAAFFVLLSLGGVAAARALA 237 (305)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 999998888888864 55666666544
No 91
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=23.09 E-value=76 Score=27.24 Aligned_cols=51 Identities=16% Similarity=0.125 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHH--Hhhccccchhhhhhhhheeeeecc--ccHhHHHH
Q 007203 27 GLSGVILVMLSVLGSVGFF--SAIGVKSTLIIMEVIPFLVLAVGV--DNMCILVN 77 (613)
Q Consensus 27 ~~~~l~~~~~a~~~~~Gl~--~~~g~~~~~~~~~~~p~l~l~igv--d~~~~l~~ 77 (613)
+.+|.+...+++..-+|+. .|++-.+..-....++++++|+++ -++.+.++
T Consensus 43 ~~~g~IG~~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~~n~w~wi~ 97 (100)
T TIGR02230 43 GMFGLIGWSVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGCLNAWHWVS 97 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455544444444444433 367666543234456677777654 34444443
Done!