Query 007203
Match_columns 613
No_of_seqs 249 out of 2529
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 19:47:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007203.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007203hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3aqp_A Probable secdf protein- 100.0 2.3E-32 7.9E-37 313.4 44.0 424 24-603 295-737 (741)
2 4dx5_A Acriflavine resistance 100.0 1E-32 3.5E-37 330.4 33.9 532 24-597 362-1037(1057)
3 2v50_A Multidrug resistance pr 100.0 9.3E-33 3.2E-37 330.1 25.8 535 24-593 362-1031(1052)
4 3ne5_A Cation efflux system pr 100.0 1.5E-31 5.1E-36 320.1 28.9 537 24-595 367-1051(1054)
5 4dx5_A Acriflavine resistance 99.8 3.3E-18 1.1E-22 204.8 24.4 195 395-594 298-501 (1057)
6 2v50_A Multidrug resistance pr 99.8 1.5E-18 5E-23 207.6 20.4 194 395-593 298-500 (1052)
7 3aqp_A Probable secdf protein- 99.8 1.2E-17 4.3E-22 191.4 22.3 161 429-592 265-428 (741)
8 3ne5_A Cation efflux system pr 99.7 2E-17 6.9E-22 198.0 14.6 194 395-593 303-515 (1054)
9 2kxh_B Peptide of FAR upstream 9.3 2.7E+02 0.0091 17.5 2.7 20 393-412 7-26 (31)
10 2zy9_A Mg2+ transporter MGTE; 7.0 1.8E+03 0.061 22.7 11.5 73 520-594 371-443 (473)
No 1
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=100.00 E-value=2.3e-32 Score=313.37 Aligned_cols=424 Identities=14% Similarity=0.161 Sum_probs=292.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhheeeeeccccHhHHHHHHHhc-CCCCCHHHHHHHHHhhhhhH
Q 007203 24 VLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPS 102 (613)
Q Consensus 24 ~~l~~~~l~~~~~a~~~~~Gl~~~~g~~~~~~~~~~~p~l~l~igvd~~~~l~~~~~~~-~~~~~~~~~i~~~l~~~g~~ 102 (613)
.+.++.+++++.+++++++|++.++|.++|. .+.+.+++.+|+++||++|+.++|+|+ +++.++++++.+++++++.|
T Consensus 295 ~~~~li~~~~l~~~i~~~~~~l~l~g~~l~l-~~i~glil~iGi~VD~~I~i~eri~e~~~~g~~~~~Ai~~~~~~~~~~ 373 (741)
T 3aqp_A 295 PHLGLVASLGLLYTSALILGLLSGLGATLTL-PGIAGLVLTLGAAVDGNVLSFERIKEELRAGKKLRQAIPEGFRHSTLT 373 (741)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCBCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHHHhchhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4467888999999999999999999999997 778888999999999999999999886 45788999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------c-c----cCCc-cchhhHHH
Q 007203 103 ITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHA-------P-I----LGLW-GVKMVVVS 169 (613)
Q Consensus 103 i~~tslTt~~~F~~~~~s~ip~ir~Fgi~~aigv~~~~v~~lt~~pall~~~~-------~-~----l~~~-~~k~~vl~ 169 (613)
++.|++||+++|+.+.+++.+.+|.||+..++|++++++.++++.|+++.... + + ..++ ..|..+++
T Consensus 374 Il~s~lTt~i~f~~L~~~~~~~~~~fa~~~~~gi~~s~~~al~~~P~l~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~ 453 (741)
T 3aqp_A 374 IMDVNIAHLLAAAALYQYATGPVRGFAVILAIGVVASVFSNLVFSRHLLERLADRGEIRPPMWLVDPRFNFMGPARYVTA 453 (741)
T ss_dssp HHHHHHHHHHHHHHHHHTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCCCCCCSTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccchhhHHhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999984211 1 0 1111 12333444
Q ss_pred HHHHHHHHHHHhhhcccccccccccCCCCchhhhHHHHHHHhhccCCCEEEEEecCCCCchhhhhhhhhcccccCchhhH
Q 007203 170 VFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVKDYNYSSESRHTNQLCSISQCDSNSLL 249 (613)
Q Consensus 170 ~~~~l~~~si~g~~~l~~~~~~~~~~p~ds~~~~~~~~~~~~f~~~~~~~iv~~~~d~~~~~~~~~~~~~~~~~~~~~l~ 249 (613)
+.++++++++++... .+ ++.+ ..|.++.++.+..++. . +. +++.
T Consensus 454 i~~vl~~~~~~~~~~--~~------~~~~-----------~~f~Gg~~i~v~~~~~-~-~~---------------~~l~ 497 (741)
T 3aqp_A 454 ATLLLAALAAGVVFA--KG------FNYS-----------IDFTGGTAYTLRAEPN-V-EV---------------ETLR 497 (741)
T ss_dssp HHHHHHHHHHHHHHH--HT------CCCC-----------HHHHCEEEEEEEECTT-C-CH---------------HHHH
T ss_pred HHHHHHHHHHHHHhh--cc------CCcc-----------eecCCCcEEEEEECCC-C-CH---------------HHHH
Confidence 445555666655421 11 1111 1122333444443321 0 00 0122
Q ss_pred HHHHHhccCCCCccccCCCCchHHHHHhhcCCCcccccccccCCccCCCCCCCCCCCCCCCCCCCCCcccCCCcccccCC
Q 007203 250 NEISRASSIPELSYIAKPAASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVCKDCTTCFRHSD 329 (613)
Q Consensus 250 ~~i~~~~~~~~~~~~~~~~~~wl~~f~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (613)
+.+++. .+++ + +.+
T Consensus 498 ~~l~~~-g~~~--------------------------------~-----~~~---------------------------- 511 (741)
T 3aqp_A 498 RFLEEK-GFPG--------------------------------K-----EAV---------------------------- 511 (741)
T ss_dssp HHHHTT-TSCS--------------------------------S-----SCE----------------------------
T ss_pred HHHHhc-CCCC--------------------------------C-----chh----------------------------
Confidence 222110 0000 0 000
Q ss_pred CCCCCCChhHHHhhhHHHHhhCCCccccCCCCCcccccccccCCCCCeEEeeEEEEecccCCChhHHHHHHHHHHHHHHH
Q 007203 330 LVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSR 409 (613)
Q Consensus 330 ~~~~~p~~~~f~~~l~~~l~~~p~~~~~~~~~~~y~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 409 (613)
.+. + . ++.+ + . .++.+...+. +.++..+..++++ +.
T Consensus 512 -------v~~-------~-g--~~~~---~-~-------------------~~~~v~~~~~-~~~~~~~l~~~l~---~~ 547 (741)
T 3aqp_A 512 -------ITQ-------V-Q--APTA---A-Y-------------------REFLVKLPPL-SDERRLELERLFA---SE 547 (741)
T ss_dssp -------EEE-------C-------------C-------------------EEEEEEESCC-CHHHHHHHHHHHH---HH
T ss_pred -------hhh-------c-c--CCCc---C-c-------------------eEEEEEeCCC-CHHHHHHHHHHHH---Hh
Confidence 000 0 0 0000 0 0 0111222221 2333333333333 22
Q ss_pred hhhccCcccccccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccch
Q 007203 410 MSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLN 489 (613)
Q Consensus 410 ~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l~i~~~~~~~~G~m~~~gi~ln 489 (613)
++. .+.+....| .+..+++.++....++++++++++++.+.| |++.++.++++++..+++++|+|+++|+++|
T Consensus 548 ~~~-~~~~~~~vG-----~~~~~~~~~~~~~al~lali~i~l~l~~~F-s~~~~l~~l~~l~~~~~~~~g~l~l~g~~l~ 620 (741)
T 3aqp_A 548 LKA-TVLASETVG-----PAIGEELRRNAVMAVLVGLGLILLYVAFRF-DWTFGVASILAVAHDVAIVAGMYSLLGLEFS 620 (741)
T ss_dssp SSS-CCCEEEEEC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred cCC-CceEEEEec-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 211 112222222 234445667777888888888888877777 9999999999999999999999999999999
Q ss_pred hHHHHHHHHHhHhcccchhHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 007203 490 AVSVVNLIMSIGIAVEFCVHIVHAFLVSH-----GNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYF 564 (613)
Q Consensus 490 ~~s~~~~~i~iGl~VD~sih~~~~~~~~~-----~~~~~a~~~al~~~g~~v~~~~~ltt~~gf~~L~fs~~~~~~~f~~ 564 (613)
..+++.+++.+|++|||+||+.+||+++. .+.++++.++++++++|+++++ +||++||++|++++.+..+.|+.
T Consensus 621 ~~~i~~~l~liGisvd~~I~l~~r~re~~~~~~g~~~~eav~~a~~~~~~~il~Ts-ltt~~g~~~L~~~g~~~~~~~g~ 699 (741)
T 3aqp_A 621 IPTIAALLTIVGYSINDSIVVSDRIRENQKLLRHLPYAELVNRSINQTLSRTVMTS-LTTLLPILALLFLGGSVLRDFAL 699 (741)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcceEEehHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccHHHHHHHH
Confidence 99999999999999999999999998863 2789999999999999999998 79999999999999999999854
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccccccccc
Q 007203 565 QMYLALVIIGFLHGLVFLPVILSLFGPPSRHIIIEKQQA 603 (613)
Q Consensus 565 ~~~~~~~~~~l~~~l~~lP~ll~~~~~~~~~~~~~~~~~ 603 (613)
.++++++++.+.+++++|+++.++++++++++.+|+-.
T Consensus 700 -~~~~Gl~~~~~~sl~l~Pal~~~~~~~~~~~~~~~~~~ 737 (741)
T 3aqp_A 700 -AIFVGIFVGTYSSIYVVSALVVAWKNRRKAQEASKAHH 737 (741)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcccccc
Confidence 34456889999999999999999988777777677443
No 2
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=100.00 E-value=1e-32 Score=330.36 Aligned_cols=532 Identities=14% Similarity=0.094 Sum_probs=328.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhheeeeeccccHhHHHHHHHhcC-C-CCCHHHHHHHHHhhhhh
Q 007203 24 VLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP-M-ELVLETRISNALVEVGP 101 (613)
Q Consensus 24 ~~l~~~~l~~~~~a~~~~~Gl~~~~g~~~~~~~~~~~p~l~l~igvd~~~~l~~~~~~~~-~-~~~~~~~i~~~l~~~g~ 101 (613)
...++..++++.+++++++|++.++|.++|. ++.+...+++|+++||++|++++++++. + +.++++++.++.++.+.
T Consensus 362 ~~~~li~~~~ip~~~~~~~~~l~~~g~~ln~-~sl~gl~~~iGi~vd~aIv~~~~~~~~~~~~g~~~~~A~~~a~~~~~~ 440 (1057)
T 4dx5_A 362 FRATLIPTIAVPVVLLGTFAVLAAFGFSINT-LTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQG 440 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCBCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCcHHH-HHHHHHHHHeeccccceEEeHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4457788999999999999999999999997 6777778889999999999999998763 3 88999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---------------------
Q 007203 102 SITLASLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIEVHAPI--------------------- 157 (613)
Q Consensus 102 ~i~~tslTt~~~F~~~~~s~---ip~ir~Fgi~~aigv~~~~v~~lt~~pall~~~~~~--------------------- 157 (613)
|+++|++||++||+.+.+++ .+.+|.||+..++|++++++.++++.|+++....+.
T Consensus 441 pi~~t~ltt~~~f~pl~~~~g~~~~~~~~~a~~~~~gl~~s~~~~l~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (1057)
T 4dx5_A 441 ALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGWFNRMF 520 (1057)
T ss_dssp HHHHHHHHHHHHHSGGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCTTCCSTTCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHHHHHHHH
Confidence 99999999999999999987 677999999999999999999999999998432110
Q ss_pred -------------cCCccchhhHHHHHHHHHHHHHHhhhcccccccccc---------cCCCCchhhhHHH---HHHHhh
Q 007203 158 -------------LGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQI---------VLPRDSYLQGYFD---NTTEYL 212 (613)
Q Consensus 158 -------------l~~~~~k~~vl~~~~~l~~~si~g~~~l~~~~~~~~---------~~p~ds~~~~~~~---~~~~~f 212 (613)
..+ +|+.+++++++++++++++..+++.++-|.. .+|++++..+..+ .+++.+
T Consensus 521 ~~~~~~y~~~l~~~lr--~~~~~~~~~~~~l~~~~~~~~~l~~~f~P~~d~~~i~v~v~~p~gtsle~t~~~~~~ie~~l 598 (1057)
T 4dx5_A 521 EKSTHHYTDSVGGILR--STGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTMVQLPAGATQERTQKVLNEVTHYY 598 (1057)
T ss_dssp HHHHHHHHHHHHHHHH--SCTHHHHHHHHHHHHHHHHHHHSCBCSSCCCCCSEEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHhCCcccCCCCCCCEEEEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 011 2334566667777788888888887765433 4677777655543 445555
Q ss_pred c--cCCCEEEEEe--cCCC--------------CchhhhhhhhhcccccCchhhHHHHHH-hccCCCCccc---------
Q 007203 213 R--VGPPLYFVVK--DYNY--------------SSESRHTNQLCSISQCDSNSLLNEISR-ASSIPELSYI--------- 264 (613)
Q Consensus 213 ~--~~~~~~iv~~--~~d~--------------~~~~~~~~~~~~~~~~~~~~l~~~i~~-~~~~~~~~~~--------- 264 (613)
. ..+.+.-+.. +.+. .+..+... ...+..++.+++++ +.++|+....
T Consensus 599 ~~~~~p~V~~v~s~~G~~~~~~~~n~~~i~V~L~~~~~r~~-----~~~s~~~i~~~lr~~l~~~p~~~~~~~~~~~~~~ 673 (1057)
T 4dx5_A 599 LTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPG-----EENKVEAITMRATRAFSQIKDAMVFAFNLPAIVE 673 (1057)
T ss_dssp HHHSTTTEEEEEEEESCSTTCCCTTEEEEEEEECCGGGSCS-----GGGSHHHHHHHHHHHHTTSTTCEEEEECCCSCGG
T ss_pred hhcCCCCeEEEEEEecccCCCCCCceEEEEEEEecHHHcCC-----cCCCHHHHHHHHHHHHhcCCCeEEEEecCCcccC
Confidence 5 3332321111 1000 00000000 00011234445543 2344442110
Q ss_pred --------------cCCCC----chHHHHHhhcCCCcccccccccCCccCCCCCCCCCC-CCCCCCCCCCCcccCCCccc
Q 007203 265 --------------AKPAA----SWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCC-SPDEEPCGVNGVCKDCTTCF 325 (613)
Q Consensus 265 --------------~~~~~----~wl~~f~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 325 (613)
.++.. .+.++..+.+++.+. .....+.++ .+.++.+. ..|++...
T Consensus 674 ~g~~~~~~i~l~~~~g~d~~~L~~~a~~l~~~l~~~~g--v~~~v~~~~--~~~~~~l~i~id~~~a~------------ 737 (1057)
T 4dx5_A 674 LGTATGFDFELIDQAGLGHEKLTQARNQLLAEAAKHPD--MLTSVRPNG--LEDTPQFKIDIDQEKAQ------------ 737 (1057)
T ss_dssp GCCSSEEEEEEEECSSCCHHHHHHHHHHHHHHHTTCTT--TEEEEEESS--CCCEEEEEEEECHHHHH------------
T ss_pred CCCCCCeeEEEEeCCCCCHHHHHHHHHHHHHHHHcCCC--ceecccccc--cCCCceEEEEECHHHHH------------
Confidence 00000 111222222221100 000000000 00000000 00000000
Q ss_pred ccCCCCCCCCChhHHHhhhHHHHhhCCCccccCCCCCccc----------c------cccccCCCC--------------
Q 007203 326 RHSDLVNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYS----------T------SVDLNGYES-------------- 375 (613)
Q Consensus 326 ~~~~~~~~~p~~~~f~~~l~~~l~~~p~~~~~~~~~~~y~----------~------~~~~~~~~~-------------- 375 (613)
. .+. +.++..+.++......+...-..++ ..|. . ++.+...+.
T Consensus 738 ---~--~Gl-s~~~v~~~l~~~~~g~~~~~~~~~~-~~~~v~v~~~~~~r~~~~~l~~l~v~~~~G~~v~L~~va~~~~~ 810 (1057)
T 4dx5_A 738 ---A--LGV-SINDINTTLGAAWGGSYVNDFIDRG-RVKKVYVMSEAKYRMLPDDIGDWYVRAADGQMVPFSAFSSSRWE 810 (1057)
T ss_dssp ---H--HTC-CHHHHHHHHHHHHHCEEEEEEEETT-EEEEEEEEECGGGSSSGGGGGGCEEECTTSCEEEGGGTEEEEEE
T ss_pred ---H--cCC-CHHHHHHHHHHHhCCceeEEEeeCC-EEEEEEEecChhhcCCHHHHcceEEECCCCCEEEhhHcEEEEEe
Confidence 0 000 1223333333222110000000000 0000 0 000000000
Q ss_pred ---CeEE------eeEEEEecccCCChhHHHHHHHHHHHHHHHhhhccCcccccccceeeehhhHHHHHHHHHHHHHHHH
Q 007203 376 ---GIIQ------ASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVAL 446 (613)
Q Consensus 376 ---~~i~------~s~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~ 446 (613)
..+. ...+.....+ ..+..+..+++++..+..+ .|+++...|.. ++.....++....+.+++
T Consensus 811 ~~~~~i~~~~~~~~v~v~~~~~~---~~~~~~~~~~~~~~~~~lp--~g~~~~~~G~~----~~~~~~~~~~~~~~~~a~ 881 (1057)
T 4dx5_A 811 YGSPRLERYNGLPSMEILGQAAP---GKSTGEAMELMEQLASKLP--TGVGYDWTGMS----YQERLSGNQAPSLYAISL 881 (1057)
T ss_dssp EECSEEEEETTEEEEEEEEEECT---TCCHHHHHHHHHHHHHTSC--TTEEEEECHHH----HSSSSCCCCHHHHHHHHH
T ss_pred cCCceEEEeCCcEEEEEEEEcCC---CCCHHHHHHHHHHHHhhCC--CCCEEEecChH----HHHHHHHHHHHHHHHHHH
Confidence 0000 0011111111 1223344444545422222 25555444431 222223345677888999
Q ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHHHHHHHh-c---CCHH
Q 007203 447 GAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVS-H---GNRN 522 (613)
Q Consensus 447 ~~v~vv~~l~~~s~~~~~~~~l~i~~~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~~~~~~~-~---~~~~ 522 (613)
+++++++++.|||++.++++++++++++++++|.|+++|.++|..+++.+++.+|++|||+||++++|+++ + .+.+
T Consensus 882 ~~i~l~L~~~f~s~~~~l~~l~~i~~~~~~~~~~l~~~g~~l~~~~~~g~i~l~Gi~vd~~I~lv~~~~~~~~~~g~~~~ 961 (1057)
T 4dx5_A 882 IVVFLCLAALYESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLI 961 (1057)
T ss_dssp HHHHHHHHHHHTCSSTHHHHHTTHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHHHHHHcCeEEEehHHhHHHHHcCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999876 3 3789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcccc
Q 007203 523 QRSQKALSTMGASVFSGITLTKLVGVIVLCFAR---SEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPSRHII 597 (613)
Q Consensus 523 ~a~~~al~~~g~~v~~~~~ltt~~gf~~L~fs~---~~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~~~~~~~~~ 597 (613)
+++.++.++.++|+++++ +||++||++|++++ .++++.++. .++++++++.+.+++++|+++.+++++.++.+
T Consensus 962 ~Ai~~a~~~~~rpil~t~-ltt~~g~~pl~~~~g~g~~~~~~~g~-~~~~Gl~~s~~~tl~~~P~l~~~~~~~~~~~~ 1037 (1057)
T 4dx5_A 962 EATLDAVRMRLRPILMTS-LAFILGVMPLVISTGAGSGAQNAVGT-GVMGGMVTATVLAIFFVPVFFVVVRRRFSRKN 1037 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHTHHHHTCCSTTHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSS
T ss_pred HHHHHHHHHhHhHHHHHH-HHHHHHHHHHHHhcCCchhhhcccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 999999999999999998 79999999999996 566777643 44456888999999999999999876544433
No 3
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=100.00 E-value=9.3e-33 Score=330.14 Aligned_cols=535 Identities=15% Similarity=0.110 Sum_probs=319.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhheeeeeccccHhHHHHHHHhcC--CCCCHHHHHHHHHhhhhh
Q 007203 24 VLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP--MELVLETRISNALVEVGP 101 (613)
Q Consensus 24 ~~l~~~~l~~~~~a~~~~~Gl~~~~g~~~~~~~~~~~p~l~l~igvd~~~~l~~~~~~~~--~~~~~~~~i~~~l~~~g~ 101 (613)
...++..++++.+++++++|++.++|.++|. ++.+...+++|+++||++|++++|+++. ++.++++++.++.++.+.
T Consensus 362 ~~~~li~~~~ip~s~~~~~~~l~~~g~~ln~-~s~~gl~~~iGi~vd~aI~~~~~~~~~~~~~g~~~~~A~~~a~~~~~~ 440 (1052)
T 2v50_A 362 FRATLIPTIAVPVVLLGTFGVLAAFGFSINT-LTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLSPREAARKSMGQIQG 440 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHHhhccceEEEehHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4457788899999999999999999999997 6777788889999999999999997753 578999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---------------------
Q 007203 102 SITLASLSEFLAFAVGSFIPM---PACRVFSMFAALAVLLDFFLQVTAFVALIEVHAPI--------------------- 157 (613)
Q Consensus 102 ~i~~tslTt~~~F~~~~~s~i---p~ir~Fgi~~aigv~~~~v~~lt~~pall~~~~~~--------------------- 157 (613)
|+++|++||++||+.+.+++. +.+|.||+..++|++++++.++++.|+++....+.
T Consensus 441 pil~t~ltt~~~f~pl~~~~~~~g~~~~~~~~~~~~gl~~s~~~~l~l~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (1052)
T 2v50_A 441 ALVGIAMVLSAVFLPMAFFGGSTGVIYRQFSITIVSAMALSVIVALILTPALCATMLKPIEKGDHGEHKGGFFGWFNRMF 520 (1052)
T ss_dssp TTHHHHHHHHHTTHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccccccchhhhHHHHHH
Confidence 999999999999999999987 48999999999999999999999999988432100
Q ss_pred --cCCcc---------chhhHHHHHHHHHHHHHHhhhcccccccccc---------cCCCCchhhhHHH---HHHHhhcc
Q 007203 158 --LGLWG---------VKMVVVSVFLAFTVASIALSTRIEAGLEQQI---------VLPRDSYLQGYFD---NTTEYLRV 214 (613)
Q Consensus 158 --l~~~~---------~k~~vl~~~~~l~~~si~g~~~l~~~~~~~~---------~~p~ds~~~~~~~---~~~~~f~~ 214 (613)
+.+++ +|+.+++++++++++++++..+++.++.|.. .+|+++...+..+ .+++.+..
T Consensus 521 ~~~~~~y~~~l~~~l~~~~~~l~~~~~l~~~~~~~~~~l~~~f~P~~d~~~~~v~~~~p~g~s~~~t~~~~~~ie~~l~~ 600 (1052)
T 2v50_A 521 LSTTHGYERGVASILKHRAPYLLIYVVIVAGMIWMFTRIPTAFLPDEDQGVLFAQVQTPPGSSAERTQVVVDSMREYLLE 600 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHTSCBCSSCCCCTTEEEEEEECSTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCCccCCCCCCCEEEEEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 00000 1234455566666777788888887776643 4788887655543 34444432
Q ss_pred CCC--EEEEEe--cCCC--Cchhhhh--hhhhccccc-----CchhhHHHHHH-hccCCCCccc--c-------------
Q 007203 215 GPP--LYFVVK--DYNY--SSESRHT--NQLCSISQC-----DSNSLLNEISR-ASSIPELSYI--A------------- 265 (613)
Q Consensus 215 ~~~--~~iv~~--~~d~--~~~~~~~--~~~~~~~~~-----~~~~l~~~i~~-~~~~~~~~~~--~------------- 265 (613)
.+. +.-+.. +... ..+.... -.+....+. +..++.+++++ +.++|+.... .
T Consensus 601 ~p~~~V~~v~s~~G~~~~~~~~~~~~i~v~l~~~~~r~~~~~~~~~i~~~l~~~l~~~p~~~~~~~~~~~~~~~g~~~~~ 680 (1052)
T 2v50_A 601 KESSSVSSVFTVTGFNFAGRGQSSGMAFIMLKPWEERPGGENSVFELAKRAQMHFFSFKDAMVFAFAPPSVLELGNATGF 680 (1052)
T ss_dssp HTTTTEEEEEEEESCCSSCCSTTEEEEEEEECCTTSCCSSTTSHHHHHHHHHHHSSSCSSSEEEEECCCSCC-----CCC
T ss_pred CCCceEEEEEEEecCCCCCCCCceEEEEEEEccHHhcccccCCHHHHHHHHHHHhhcCCCcEEEEecCccccCCCCCCce
Confidence 222 221111 1000 0000000 000000000 01234444443 2334432100 0
Q ss_pred --------CCC----CchHHHHHhhcCCCcccccccccCCccCCCCCCCCCC-CCCCCCCCCCCcccCCCcccccCCCCC
Q 007203 266 --------KPA----ASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCC-SPDEEPCGVNGVCKDCTTCFRHSDLVN 332 (613)
Q Consensus 266 --------~~~----~~wl~~f~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (613)
++. ..+.++..+.+++.+. .. ..+.++ .+.+|.+. .+|++....+
T Consensus 681 ~i~i~~~~g~d~~~L~~~a~~l~~~l~~~~g--v~-~v~~~~--~~~~p~~~i~id~~~a~~~----------------- 738 (1052)
T 2v50_A 681 DLFLQDQAGVGHEVLLQARNKFLMLAAQNPA--LQ-RVRPNG--MSDEPQYKLEIDDEKASAL----------------- 738 (1052)
T ss_dssp CEEEEECSSSCHHHHHHHHHHHHHHTTSCTT--EE-EEEESS--CCCEECCBCEECHHHHTTT-----------------
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHhcCCC--eE-eccccc--cCCCeeEEEEECHHHHHHc-----------------
Confidence 000 0112222222222110 00 000000 00111000 0011100000
Q ss_pred CCCChhHHHhhhHHHHhhCCCcccc-------------------------------CCCCCcccccccccC-CCCCeEE-
Q 007203 333 NRPSTEQFREKLPWFLNALPSADCA-------------------------------KGGHGAYSTSVDLNG-YESGIIQ- 379 (613)
Q Consensus 333 ~~p~~~~f~~~l~~~l~~~p~~~~~-------------------------------~~~~~~y~~~~~~~~-~~~~~i~- 379 (613)
+ -+.++..+.++..+...+...-. +|..-+-.+-.++.. .....|.
T Consensus 739 G-ls~~~i~~~l~~~~~g~~~~~~~~~~~~~~v~v~~~~~~r~~~~~l~~l~v~~~~G~~VpL~~va~i~~~~~p~~i~r 817 (1052)
T 2v50_A 739 G-VSLADINSTVSIAWGSSYVNDFIDRGRVKRVYLQGRPDARMNPDDLSKWYVRNDKGEMVPFNAFATGKWEYGSPKLER 817 (1052)
T ss_dssp T-CCHHHHHHHHHHHHSCEEEEEEEETTEEEEEEEEECGGGSSSGGGGTTCEEECSSSCEEEGGGGEECCCCEECSEECB
T ss_pred C-CCHHHHHHHHHHHhCCceeeEEEECCeEEEEEEEeChhhccCHHHHhcCeeECCCCCEEEhhHcEEEEEecCCceEEe
Confidence 0 01223333232221110000000 000000000000000 0000000
Q ss_pred ---eeEEEEe--cccCCChhHHHHHHHHHHHHHHHhhhccCcccccccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007203 380 ---ASEFRTF--HTPLNKQGDYVNSLRAAREFSSRMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCL 454 (613)
Q Consensus 380 ---~s~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~v~vv~~ 454 (613)
..+..+. ..+-.+..+. ++++++..++++ .|+++...|.. ++..+..+++...+.+++++++++++
T Consensus 818 ~n~~~~i~V~~~~~~~~~~~~~---~~~i~~~~~~lp--~g~~~~~~G~~----~~~~~~~~~~~~~~~~a~~~i~l~l~ 888 (1052)
T 2v50_A 818 YNGVPAMEILGEPAPGLSSGDA---MAAVEEIVKQLP--KGVGYSWTGLS----YEERLSGSQAPALYALSLLVVFLCLA 888 (1052)
T ss_dssp CSSSBEEEEEEEECTTCCSCTT---TTTHHHHGGGSC--TTEEEEECTHH----HHTTTTCCCSHHHHHHHHHHHHHHHH
T ss_pred cCCeeEEEEEEEeCCCCCHHHH---HHHHHHHHhhCC--CCcEEEecchH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011111 1111122233 333334333322 24554444542 22222335566788899999999999
Q ss_pred HhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHHHHHHHhc---CCHHHHHHHHHHH
Q 007203 455 LMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVSH---GNRNQRSQKALST 531 (613)
Q Consensus 455 l~~~s~~~~~~~~l~i~~~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~~~~~~~~---~~~~~a~~~al~~ 531 (613)
+.|||++.+++++++++++++++++.|+++|.++|..+++.+++.+|++|||+||++++|+++. .+.++++.++.++
T Consensus 889 ~~f~s~~~~l~il~~ip~~~~g~~~~~~~~g~~l~~~~~~g~~~l~Gi~vd~~I~lv~~~~~~~~~g~~~~~Ai~~a~~~ 968 (1052)
T 2v50_A 889 ALYESWSIPFSVMLVVPLGVIGALLATSMRGLSNDVFFQVGLLTTIGLSAKNAILIVEFAKELHEQGKGIVEAAIEACRM 968 (1052)
T ss_dssp HHTTCSSTTHHHHTHHHHHHTTHHHHHHHTTCCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHHH
T ss_pred HHHcchHHHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHHHHHHcCeEEEeehHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998864 3788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 007203 532 MGASVFSGITLTKLVGVIVLCFARS---EIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPS 593 (613)
Q Consensus 532 ~g~~v~~~~~ltt~~gf~~L~fs~~---~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~~~~~ 593 (613)
.++|+++++ +||++||+||+++++ ++.+.++ ..++++++++.+.+++++|+++.++++..
T Consensus 969 ~~rpil~t~-~tt~~g~~pl~~~~~~g~~~~~~~~-~~~~~Gl~~s~~~~l~~~P~l~~~~~~~~ 1031 (1052)
T 2v50_A 969 RLRPIVMTS-LAFILGVVPLAISTGAGSGSQHAIG-TGVIGGMVTATVLAIFWVPLFYVAVSTLF 1031 (1052)
T ss_dssp HHHHHHHHH-HHHHTTSHHHHTCCSTTTTHHHHHH-HHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred hHHHHHHHH-HHHHHHHHHHHhcCCCChhhhcccH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999998 699999999999987 6677764 34445688899999999999999887643
No 4
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=100.00 E-value=1.5e-31 Score=320.13 Aligned_cols=537 Identities=11% Similarity=0.087 Sum_probs=325.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhheeeeeccccHhHHHHHHHhcCC------------CCCHHHH
Q 007203 24 VLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPM------------ELVLETR 91 (613)
Q Consensus 24 ~~l~~~~l~~~~~a~~~~~Gl~~~~g~~~~~~~~~~~p~l~l~igvd~~~~l~~~~~~~~~------------~~~~~~~ 91 (613)
...++..++++.++++++++++.++|.++|. ++.+...+++|+++||+++++++++++.+ +.+++++
T Consensus 367 ~~~~li~~~~ip~~~~~~~~~l~~~g~~ln~-~sl~gl~l~iGi~vd~aIvvve~~~~~~~~~~~~~~~~~~~g~~~~~a 445 (1054)
T 3ne5_A 367 VRSALVAIISLPLGLCIAFIVMHFQGLNANI-MSLGGIAIAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQV 445 (1054)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHTCCBCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHSCSSCCCTTHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH-HHHHHHHHHhhheecCcEEEeeHHHHHHhhccccccccccccCCHHHH
Confidence 3446788899999999999999999999997 67777778899999999999999976543 5678999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHhhcccC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------
Q 007203 92 ISNALVEVGPSITLASLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIEVH-------------- 154 (613)
Q Consensus 92 i~~~l~~~g~~i~~tslTt~~~F~~~~~s~---ip~ir~Fgi~~aigv~~~~v~~lt~~pall~~~-------------- 154 (613)
+.++.++.++|++.|++||++||+.+.+++ .+.++.||+..++|++++++.++++.|+++...
T Consensus 446 ~~~a~~~~~~~i~~s~ltt~~~f~pl~~~~g~~~~~~~~~~~~~~~gl~~s~~~~l~~~P~l~~~~~~~~~~~~~~~~~~ 525 (1054)
T 3ne5_A 446 ITDASVEVGPALFISLLIITLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPLN 525 (1054)
T ss_dssp HHTTTTTHHHHHHHHHHHHHHTTGGGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHC------------CH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccHHH
Confidence 999999999999999999999999999887 778999999999999999999999999988321
Q ss_pred -------cc---ccCCccchhhHHHHHHHHHHHHHHhhhcccccccccc---------cCCCCchhhhHHH---HHHHhh
Q 007203 155 -------AP---ILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQI---------VLPRDSYLQGYFD---NTTEYL 212 (613)
Q Consensus 155 -------~~---~l~~~~~k~~vl~~~~~l~~~si~g~~~l~~~~~~~~---------~~p~ds~~~~~~~---~~~~~f 212 (613)
.+ +..+| |..+++++++++++++++..+++.++-|.. ..|+++...+..+ .+++.+
T Consensus 526 ~~~~~~y~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~l~~~f~P~~d~g~~~v~~~~p~Gtsle~t~~~~~~ie~~l 603 (1054)
T 3ne5_A 526 RFLIRVYHPLLLKVLHW--PKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPSTLPGISAAEAASMLQKTDKLI 603 (1054)
T ss_dssp HHHHHHHHHHHHHHTSS--THHHHHHHHHHHHHTHHHHTTCCBCSSCCCCCSEEEECCBCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHhCCceECCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 11 12222 344566667777888888888887764422 3566666555433 445555
Q ss_pred ccCCCEEEEEe--cC-CC-Cchhh-hhhhh-hcc-------cccCchhhHHHHHHhccCCCCccc---------------
Q 007203 213 RVGPPLYFVVK--DY-NY-SSESR-HTNQL-CSI-------SQCDSNSLLNEISRASSIPELSYI--------------- 264 (613)
Q Consensus 213 ~~~~~~~iv~~--~~-d~-~~~~~-~~~~~-~~~-------~~~~~~~l~~~i~~~~~~~~~~~~--------------- 264 (613)
...+.+.-+.. +. +. .++.. ..... ... .+.+.+++.+++++..++|+....
T Consensus 604 ~~~p~V~~v~s~~G~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~l~~~lr~~~~~p~~~~~~~~~~~~~~~~~~~g 683 (1054)
T 3ne5_A 604 MSVPEVARVFGKTGKAETATDSAPLEMVETTIQLKPQEQWRPGMTMDKIIEELDNTVRLPGLANLWVPPIRNRIDMLSTG 683 (1054)
T ss_dssp HTSTTEEEEEEEEECCSSTTCCCCTTCBCEEEEECCTTTSCSSCCHHHHHHHHHHHSCCTTCBCCEECHHHHHHHHHHTS
T ss_pred hcCCCeEEEEEEecCCCCCCCCCCcceEEEEEEecchhhccccCCHHHHHHHHHHHcCCCCceeeeccccccccccccCC
Confidence 43333322211 10 00 00000 00000 000 001123445555443334432110
Q ss_pred ---------cCCCC----chHHHHHhhcCCCcccccccccCCccCCCCCCCCCC-CCCCCCCCCCCcccCCCcccccCCC
Q 007203 265 ---------AKPAA----SWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCC-SPDEEPCGVNGVCKDCTTCFRHSDL 330 (613)
Q Consensus 265 ---------~~~~~----~wl~~f~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (613)
.++.. ..-++..+.+++.+. .. ..+.++ ...++.+. ..|++....+
T Consensus 684 ~~~~i~i~l~G~d~~~L~~~a~~l~~~l~~~~g--v~-~v~~~~--~~~~~~l~i~id~~~a~~~--------------- 743 (1054)
T 3ne5_A 684 IKSPIGIKVSGTVLADIDAMAEQIEEVARTVPG--VA-SALAER--LEGGRYINVEINREKAARY--------------- 743 (1054)
T ss_dssp CSSSEEEEEECSCHHHHHHHHHHHHHHHHHSTT--CS-EEEECC--SSCEEEEEEEECHHHHHTT---------------
T ss_pred CCCcEEEEEeCCCHHHHHHHHHHHHHHHhcCCC--ce-Eeeccc--cCCCeeEEEEECHHHHHHc---------------
Confidence 00000 011112222211100 00 000000 00000000 0000000000
Q ss_pred CCCCCChhHHHhhhHHHHhhCCCccccCCCCCccc----------cc------ccccCCCC-----------------Ce
Q 007203 331 VNNRPSTEQFREKLPWFLNALPSADCAKGGHGAYS----------TS------VDLNGYES-----------------GI 377 (613)
Q Consensus 331 ~~~~p~~~~f~~~l~~~l~~~p~~~~~~~~~~~y~----------~~------~~~~~~~~-----------------~~ 377 (613)
+ -+.++..+.++......+..+-.+++ +.|. .+ +.+...+. ..
T Consensus 744 --G-ls~~~v~~~l~~~~~g~~~~~~~~~~-~~~~v~vr~~~~~r~~~~~l~~l~v~~~~G~~v~L~~va~~~~~~~~~~ 819 (1054)
T 3ne5_A 744 --G-MTVADVQLFVTSAVGGAMVGETVEGI-ARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADIKVSTGPSM 819 (1054)
T ss_dssp --T-CCHHHHHHHHHTTTSCCEEEEEEETT-EEEEEEEECCGGGSSSHHHHTTCEEECTTCCEEEGGGTEEEEEEEECSC
T ss_pred --C-CCHHHHHHHHHHHhCCceeeEEEECC-EEEEEEEEeChhhcCCHHHHhccEeECCCCCEEEhhHcEEEEEecCCce
Confidence 0 01122222222111100000000000 0000 00 00000000 00
Q ss_pred EEe---eE-EEEecccCCChhHHHHHHHHHHHHHH-HhhhccCcccccccceeeehhhHHHHHHHHHHHHHHHHHHHHHH
Q 007203 378 IQA---SE-FRTFHTPLNKQGDYVNSLRAAREFSS-RMSDTLKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIV 452 (613)
Q Consensus 378 i~~---s~-~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~v~vv 452 (613)
+.. .+ ..+.. +.. ..+..+.++++++..+ +.....|+++...|. .+...+..++....+++++++++++
T Consensus 820 i~~~~~~~~~~v~~-~~~-~~~~~~~~~~i~~~~~~~~~~p~g~~~~~~G~----~~~~~~~~~~~~~~~~~al~li~l~ 893 (1054)
T 3ne5_A 820 LKTENARPTSWIYI-DAR-DRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQ----FELLERANHKLKLMVPMTLMIIFVL 893 (1054)
T ss_dssp EEEETTEEEEEEEE-ECC-SSCHHHHHHHHHHHHHHHCCCCTTCEEEEEEH----HHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred EEEECCeEEEEEEE-EeC-CCCHHHHHHHHHHHHHhcCCCCCCcEEEeCch----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 00 01111 111 1234556666666554 322223555544443 3444445567778889999999999
Q ss_pred HHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHHHHHHHhc--------------
Q 007203 453 CLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVSH-------------- 518 (613)
Q Consensus 453 ~~l~~~s~~~~~~~~l~i~~~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~~~~~~~~-------------- 518 (613)
+++.|||++.++++++++++++++++|.|+++|.++|..+++.+++.+|++|||+||+++++++..
T Consensus 894 L~~~f~S~~~~l~il~~ip~~~~g~~~~l~l~g~~l~~~~~~g~i~l~Gi~vd~~I~lv~~~~~~~~~~~~~~~~~~~~g 973 (1054)
T 3ne5_A 894 LYLAFRRVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAEFGVVMLMYLRHAIEAVPSLNNPQTFSE 973 (1054)
T ss_dssp HHHHTCCHHHHHHHHTTSHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHHHHTTTSCCH
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcccccCC
Confidence 999999999999999999999999999999999999999999999999999999999997665532
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcc
Q 007203 519 GNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFAR---SEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPSRH 595 (613)
Q Consensus 519 ~~~~~a~~~al~~~g~~v~~~~~ltt~~gf~~L~fs~---~~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~~~~~~~ 595 (613)
.+..+++.++.++.++|+++++ +||++||+||++++ .++++.++. .+++++++|.+.+++++|+++.++++++++
T Consensus 974 ~~~~~Ai~~a~~~~~rpil~t~-ltti~g~~pl~~~~g~g~~~~~~l~~-~~~~Gl~~s~~~tl~v~P~l~~~~~~~~~~ 1051 (1054)
T 3ne5_A 974 QKLDEALYHGAVLRVRPKAMTV-AVIIAGLLPILWGTGAGSEVMSRIAA-PMIGGMITAPLLSLFIIPAAYKLMWLHRHR 1051 (1054)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHSCCSTTHHHHHHTTH-HHHHHHHHHHHHHHHHTHHHHHHHTTTCC-
T ss_pred CCHHHHHHHHHHHhHhHHHHHH-HHHHHHHHHHHhhcCCChHHhccCHH-HHHhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 2457899999999999999998 79999999999995 556676643 344568889999999999999999765443
No 5
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=99.79 E-value=3.3e-18 Score=204.80 Aligned_cols=195 Identities=12% Similarity=0.204 Sum_probs=159.3
Q ss_pred HHHHHHHHHHHHHHHhhhc--cCcccccccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHH
Q 007203 395 DYVNSLRAAREFSSRMSDT--LKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVM 472 (613)
Q Consensus 395 ~~~~~i~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l~i~~ 472 (613)
+..+..+++++..++.+++ .|+++...|.. .+..++..++...++.++++++++++++++||++.++++++++++
T Consensus 298 ~~~~~~~~v~~~~~~~~~~lp~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~lv~~vl~~~~~s~~~~li~~~~ip~ 374 (1057)
T 4dx5_A 298 NALDTAAAIRAELAKMEPFFPSGLKIVYPYDT---TPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPV 374 (1057)
T ss_dssp CHHHHHHHHHHHHHHHGGGCCTTEEEEEEEES---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCeEEEEEecc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3455566666666554322 14444333321 233345567788888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007203 473 IVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVS----HGNRNQRSQKALSTMGASVFSGITLTKLVGV 548 (613)
Q Consensus 473 ~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~~~~~~~----~~~~~~a~~~al~~~g~~v~~~~~ltt~~gf 548 (613)
++++++|+|+++|.++|.++++.+++++|++|||+||++++|+++ ..++.+++.++.+++++|+++++ +||++||
T Consensus 375 ~~~~~~~~l~~~g~~ln~~sl~gl~~~iGi~vd~aIv~~~~~~~~~~~~g~~~~~A~~~a~~~~~~pi~~t~-ltt~~~f 453 (1057)
T 4dx5_A 375 VLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIA-MVLSAVF 453 (1057)
T ss_dssp HHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHeeccccceEEeHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 999999999999999999999999999999999999999988764 24789999999999999999998 7999999
Q ss_pred HHHhhcc---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 007203 549 IVLCFAR---SEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPSR 594 (613)
Q Consensus 549 ~~L~fs~---~~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~~~~~~ 594 (613)
+||+|++ .++++.++ ...++++++|++.+++++|+++.++.++.+
T Consensus 454 ~pl~~~~g~~~~~~~~~a-~~~~~gl~~s~~~~l~~~P~l~~~~~~~~~ 501 (1057)
T 4dx5_A 454 VPMAFFGGSTGAIYRQFS-ITIVSAMALSVLVALILTPALCATMLKPIA 501 (1057)
T ss_dssp SGGGGCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHccCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999998 56677764 344556889999999999999999987654
No 6
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=99.79 E-value=1.5e-18 Score=207.61 Aligned_cols=194 Identities=11% Similarity=0.225 Sum_probs=159.8
Q ss_pred HHHHHHHHHHHHHHHhhhc--cCcccccccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHH
Q 007203 395 DYVNSLRAAREFSSRMSDT--LKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVM 472 (613)
Q Consensus 395 ~~~~~i~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l~i~~ 472 (613)
+..+..+++++..++..++ .|+++...|.. .+..+...++...++.++++++++++++++||++.++++++++++
T Consensus 298 ~~~~~~~~v~~~~~~~~~~lp~g~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~lv~lvl~~~~~s~~~~li~~~~ip~ 374 (1052)
T 2v50_A 298 NALDTAKAIRQTIANLEPFMPQGMKVVYPYDT---TPVVSASIHEVVKTLGEAILLVFLVMYLFLQNFRATLIPTIAVPV 374 (1052)
T ss_dssp CHHHHHHHHHHHHTTTGGGSCTTEEEEEEEES---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhCCCCeEEEEEecc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4556667776666654322 24444333321 244555667788889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007203 473 IVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVS----HGNRNQRSQKALSTMGASVFSGITLTKLVGV 548 (613)
Q Consensus 473 ~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~~~~~~~----~~~~~~a~~~al~~~g~~v~~~~~ltt~~gf 548 (613)
++++++|+|+++|+++|.++++.+++++|++|||+||++++|+++ ..++.+|+.++.+++++|+++++ +||++||
T Consensus 375 s~~~~~~~l~~~g~~ln~~s~~gl~~~iGi~vd~aI~~~~~~~~~~~~~g~~~~~A~~~a~~~~~~pil~t~-ltt~~~f 453 (1052)
T 2v50_A 375 VLLGTFGVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLSPREAARKSMGQIQGALVGIA-MVLSAVF 453 (1052)
T ss_dssp HHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHTTSSTTHHHH-HHHHHTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccceEEEehHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 999999999999999999999999999999999999999998663 24789999999999999999998 7999999
Q ss_pred HHHhhccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 007203 549 IVLCFARS---EIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPS 593 (613)
Q Consensus 549 ~~L~fs~~---~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~~~~~ 593 (613)
+||+|++. ++++.++ ...++++++|++.+++++|+++.++.++.
T Consensus 454 ~pl~~~~~~~g~~~~~~~-~~~~~gl~~s~~~~l~l~P~l~~~~~~~~ 500 (1052)
T 2v50_A 454 LPMAFFGGSTGVIYRQFS-ITIVSAMALSVIVALILTPALCATMLKPI 500 (1052)
T ss_dssp HHHHTCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCC-
T ss_pred HHHHHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 99999987 4777764 34455688999999999999999987643
No 7
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=99.77 E-value=1.2e-17 Score=191.39 Aligned_cols=161 Identities=14% Similarity=0.146 Sum_probs=144.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchh
Q 007203 429 EQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVMIVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCV 508 (613)
Q Consensus 429 ~~~~~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l~i~~~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~si 508 (613)
+...+..++...+.+++++++++++++++| ++.++++++++++.+++++|+|+++|+++|..++..+++++|++|||+|
T Consensus 265 ~l~~~~~~~~~~a~~i~~~lv~l~l~l~~r-~~~~li~~~~l~~~i~~~~~~l~l~g~~l~l~~i~glil~iGi~VD~~I 343 (741)
T 3aqp_A 265 TLGQDAIQAGIRSALIGTLAIFLLIFAYYG-PHLGLVASLGLLYTSALILGLLSGLGATLTLPGIAGLVLTLGAAVDGNV 343 (741)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHCCBCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHHHHHHhchh
Confidence 444456677788889999999999999998 8899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007203 509 HIVHAFLVSH---GNRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVI 585 (613)
Q Consensus 509 h~~~~~~~~~---~~~~~a~~~al~~~g~~v~~~~~ltt~~gf~~L~fs~~~~~~~f~~~~~~~~~~~~l~~~l~~lP~l 585 (613)
|+.++|+++. +++++++.+++++.++|++.++ +||++||++|.+++.++++.|.. +..++++++++.+++++|++
T Consensus 344 ~i~eri~e~~~~g~~~~~Ai~~~~~~~~~~Il~s~-lTt~i~f~~L~~~~~~~~~~fa~-~~~~gi~~s~~~al~~~P~l 421 (741)
T 3aqp_A 344 LSFERIKEELRAGKKLRQAIPEGFRHSTLTIMDVN-IAHLLAAAALYQYATGPVRGFAV-ILAIGVVASVFSNLVFSRHL 421 (741)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTCCTHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcccccchHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 9999999874 4789999999999999999998 79999999999999999998754 44556899999999999999
Q ss_pred HHhhCCC
Q 007203 586 LSLFGPP 592 (613)
Q Consensus 586 l~~~~~~ 592 (613)
+.++.++
T Consensus 422 ~~~~~~~ 428 (741)
T 3aqp_A 422 LERLADR 428 (741)
T ss_dssp HHHHHHH
T ss_pred HHHHhhc
Confidence 9988654
No 8
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=99.72 E-value=2e-17 Score=197.99 Aligned_cols=194 Identities=13% Similarity=0.132 Sum_probs=153.2
Q ss_pred HHHHHHHHHHHHHHHhhhc--cCcccccccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHH
Q 007203 395 DYVNSLRAAREFSSRMSDT--LKINIFPYSVFYIFFEQYLDIWRVALINIAVALGAIFIVCLLMTSSLWSSAIILVVLVM 472 (613)
Q Consensus 395 ~~~~~i~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~v~vv~~l~~~s~~~~~~~~l~i~~ 472 (613)
+..+..+++++..++.++. .|+++...+. ..+..++..++...++.+++++++++++++++|++.++++++++++
T Consensus 303 ~~~~~~~~v~~~l~~~~~~lp~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~lv~~vl~~~~~s~~~~li~~~~ip~ 379 (1054)
T 3ne5_A 303 NAREVIAAVKDKLETLKSSLPEGVEIVTTYD---RSQLIDRAIDNLSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPL 379 (1054)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCTTEEEEEEEE---THHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCSHHHHHHHHTTTHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCeEEEEEec---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 4455666666555554321 2444332221 1233445567778888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHhHhcccchhHHHHHHHHhc-------------C-CHHHHHHHHHHHHHHHHHH
Q 007203 473 IVIDLLGVMAILGIQLNAVSVVNLIMSIGIAVEFCVHIVHAFLVSH-------------G-NRNQRSQKALSTMGASVFS 538 (613)
Q Consensus 473 ~~~~~~G~m~~~gi~ln~~s~~~~~i~iGl~VD~sih~~~~~~~~~-------------~-~~~~a~~~al~~~g~~v~~ 538 (613)
++++++++|+++|.++|..+++.+++++|++|||+||++++++++. + ++.+++.++.+++++|++.
T Consensus 380 ~~~~~~~~l~~~g~~ln~~sl~gl~l~iGi~vd~aIvvve~~~~~~~~~~~~~~~~~~~g~~~~~a~~~a~~~~~~~i~~ 459 (1054)
T 3ne5_A 380 GLCIAFIVMHFQGLNANIMSLGGIAIAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFI 459 (1054)
T ss_dssp HHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHSCSSCCCTTHHHHHHHTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhheecCcEEEeeHHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887643 2 4678999999999999999
Q ss_pred HHHHHHHHHHHHHhhcc---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 007203 539 GITLTKLVGVIVLCFAR---SEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPS 593 (613)
Q Consensus 539 ~~~ltt~~gf~~L~fs~---~~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~~~~~ 593 (613)
++ +||++||+||+|++ .++++.++ ...++++++|++.+++++|+++.++.+++
T Consensus 460 s~-ltt~~~f~pl~~~~g~~~~~~~~~~-~~~~~gl~~s~~~~l~~~P~l~~~~~~~~ 515 (1054)
T 3ne5_A 460 SL-LIITLSFIPIFTLEGQEGRLFGPLA-FTKTYAMAGAALLAIVVIPILMGYWIRGK 515 (1054)
T ss_dssp HH-HHHHHTTGGGGGCCHHHHHHHHHHH-HHHHHHHHHHHHHTTTTHHHHHHHC----
T ss_pred HH-HHHHHHHHHHHHhcchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 98 69999999999987 56677764 34455688999999999999999887654
No 9
>2kxh_B Peptide of FAR upstream element-binding protein 1; RRM, FIR, FBP, protein-protein complex, protein binding; NMR {Homo sapiens}
Probab=9.33 E-value=2.7e+02 Score=17.48 Aligned_cols=20 Identities=15% Similarity=0.498 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHHHHHhhh
Q 007203 393 QGDYVNSLRAAREFSSRMSD 412 (613)
Q Consensus 393 ~~~~~~~i~~~~~~~~~~~~ 412 (613)
.+.+.++++.+|+++.++..
T Consensus 7 ~daFadA~~RaRQIaAKig~ 26 (31)
T 2kxh_B 7 NDAFKDALQRARQIAAKIGG 26 (31)
T ss_dssp SSHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcC
Confidence 35788999999999988754
No 10
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=6.99 E-value=1.8e+03 Score=22.68 Aligned_cols=73 Identities=22% Similarity=0.284 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Q 007203 520 NRNQRSQKALSTMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLFGPPSR 594 (613)
Q Consensus 520 ~~~~a~~~al~~~g~~v~~~~~ltt~~gf~~L~fs~~~~~~~f~~~~~~~~~~~~l~~~l~~lP~ll~~~~~~~~ 594 (613)
+.++..+...++.+...+.|.++..++|.....+.+..+....+..++ +.++++.+.+ .++|.++..++.-|.
T Consensus 371 ~~~~~~~~~~ke~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~a~~-~~~~~a~~~g-~~~p~~~~~~~~DPa 443 (473)
T 2zy9_A 371 DLRDWRRVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLV-LIVFFANLVG-AMLPFLLRRLGVDPA 443 (473)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHH-HHHHHHHHHH-TTHHHHHHHHTCCGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHH-HHHHHHHHHcCCCcc
Confidence 344556667788888888886555555554444433111111111111 1222222222 268999988876543
Done!