BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007204
(613 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8L7W8|FUCO2_ARATH Alpha-L-fucosidase 2 OS=Arabidopsis thaliana GN=At4g34260 PE=2 SV=1
Length = 843
Score = 791 bits (2042), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/595 (63%), Positives = 465/595 (78%), Gaps = 17/595 (2%)
Query: 10 TNPLKITFNGPAKHFTDAIPIGNGRLGAMVWGGVPSETLKLNEDTLWTGVPGDYTNPDAP 69
+ PLK+TF GP++++TDAIPIGNGRLGA +WGGV SE L +NEDT+WTGVP DYTN AP
Sbjct: 49 SRPLKLTFGGPSRNWTDAIPIGNGRLGATIWGGVSSEILNINEDTIWTGVPADYTNQKAP 108
Query: 70 KALSDVRSLVDSGQYAEATAASVKLFGHPADVYQLLGDIELEFDDSHLKYAEETYRRELD 129
+AL++VR LVD YAEAT+ +VKL G P+DVYQ++GD+ LEFD SH KY + +YRRELD
Sbjct: 109 EALAEVRRLVDERNYAEATSEAVKLSGQPSDVYQIVGDLNLEFDSSHRKYTQASYRRELD 168
Query: 130 LNTATARVKYSVGNVEFTREHFSSNPDQVIVTKISGSESGSLSFNVSLDSLLDNHSYVNG 189
L TA A+V YSVG V+F+RE F+SNPDQVI+ KI S+ GSLSF VS DS L +HS N
Sbjct: 169 LETAVAKVSYSVGAVDFSREFFASNPDQVIIAKIYASKPGSLSFKVSFDSELHHHSETNP 228
Query: 190 N-NQIIMEGRCPGKRIP----PKANAN----DDPKGIQFSAILEIKISDDRGTISALEDK 240
NQI+M G C KR+P NA DD KG+QF++ILE+++S+ G++S+L K
Sbjct: 229 KANQILMRGSCRPKRLPVNLKKSINATNIPYDDHKGLQFASILEVRVSNG-GSVSSLGGK 287
Query: 241 KLKVEGSDWAVLLLVASSSFDGPFINPSDSKKDPTSESMSALQSIRNLSYSDLYTRHLDD 300
KL VE +DWAVLLL ASS+FDGPF P DSK DP E ++ + S++ SYSDLY RHL D
Sbjct: 288 KLSVEKADWAVLLLAASSNFDGPFTMPVDSKIDPAKECVNRISSVQKYSYSDLYARHLGD 347
Query: 301 YQKLFHRVSIQLSRSPKDIVTDTCSEENIDTVPSAERVKSFQTDEDPSLVELLFQFGRYL 360
YQKLF+RVS+ LS S + +E +AERV+SF+TD+DPSLVELLFQ+GRYL
Sbjct: 348 YQKLFNRVSLHLSGS-------STNETVQQATSTAERVRSFKTDQDPSLVELLFQYGRYL 400
Query: 361 LISSSRPGTQVANLQGIWNEDLSPTWDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLT 420
LISSSRPGTQVANLQGIWN D+ P WD APH+NINL+MNYW SLP N+ ECQEPLFD+++
Sbjct: 401 LISSSRPGTQVANLQGIWNRDIQPPWDGAPHLNINLQMNYWHSLPGNIRECQEPLFDYMS 460
Query: 421 YLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNY 480
L+ING KTAQVNY ASGWV H +DIWAK+S DRG+ VWALWPMGGAWLCTH WEHY Y
Sbjct: 461 ALAINGRKTAQVNYGASGWVAHQVSDIWAKTSPDRGEAVWALWPMGGAWLCTHAWEHYTY 520
Query: 481 TMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSYSS 540
TMD++FL+K+ YPLLEGC SFLLDWLI+G DG+L+TNPSTSPEH F AP GK A VSYSS
Sbjct: 521 TMDKEFLKKKGYPLLEGCTSFLLDWLIKGKDGFLQTNPSTSPEHMFTAPIGKPASVSYSS 580
Query: 541 TMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLRPTKIAEDGSIMEWVQ 595
TMD+AII+EVF+ I+SA+E+L K D L+ KV+ + +L PT+I++DGSI EW +
Sbjct: 581 TMDIAIIKEVFADIVSASEILGKTNDTLIGKVIAAQAKLPPTRISKDGSIREWAE 635
>sp|Q5AU81|AFCA_EMENI Alpha-fucosidase A OS=Emericella nidulans (strain FGSC A4 / ATCC
38163 / CBS 112.46 / NRRL 194 / M139) GN=afcA PE=2 SV=1
Length = 809
Score = 229 bits (585), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 176/594 (29%), Positives = 289/594 (48%), Gaps = 65/594 (10%)
Query: 30 IGNGRLGAMVWGGVPSETLKLNEDTLWTGVP---GDYT--NPDAP--KALSDVRSLVDSG 82
IGNG+LG + +G +E L LN D+LW+G P +YT NP +P AL +R +
Sbjct: 46 IGNGKLGVIPFGPPDTEKLNLNVDSLWSGGPFEVENYTGGNPSSPIYDALPGIRERI--- 102
Query: 83 QYAEATAASVKLFGHPADVY---QLLGDIELEFDDSHLKYAEETYRRELDLNTATARVKY 139
+ T +L G + Y ++LG+I + D A Y+R LDL+ R +
Sbjct: 103 -FENGTGGMEELLG-SGNHYGSSRVLGNITIALDGVE---AYSKYKRTLDLSDGVHRTSF 157
Query: 140 SVGN---VEFTREHFSSNPDQVIVTKISGSESGSL-SFNVSLDSLLDNHSYVNGNNQIIM 195
++ N F S PDQV V + + L +S+++LL N S ++
Sbjct: 158 TIANRTTAALKSSIFCSYPDQVCVYHLESASDARLPKVTISIENLLVNQS--------LL 209
Query: 196 EGRCP--GKRIPPKANA---NDDPKGIQFSAILEIKISDDRGTISALEDKKLKVEGSDWA 250
+ C KR + + P+G++++A+ E+ ++ + L + L++
Sbjct: 210 QTSCESEAKRAVLRHSGVTQAGPPEGMKYAAVAEV-VNPRSSVTTCLGEGALQISSRKKQ 268
Query: 251 VLLLV-ASSSFDGPFINPSD-----SKKDPTSESMSALQSIRNLSYSDLYTRHLDDYQKL 304
+ +++ A++++D N + KDP S + Y L RH+ DY+KL
Sbjct: 269 LTIIIGAATNYDQKAGNAKSGWSFKNAKDPASIVDGIASAAGWKGYQRLLDRHVKDYKKL 328
Query: 305 FHRVSIQLSRSPKDIVTDTCSEENIDTVPSAERVKSFQTDEDPSLVELLFQFGRYLLISS 364
S++L DT + DT E+ +P L LL + R+LL+SS
Sbjct: 329 MGDFSLELP--------DTTDSASKDTSELIEKYSYASATGNPYLENLLLDYARHLLVSS 380
Query: 365 SRPGTQVANLQGIWNEDLSPTWDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSI 424
SRP + ANLQG W E L+P+W + H NINL+MNYW + L E Q L++++ +
Sbjct: 381 SRPNSLPANLQGRWTESLTPSWSADYHANINLQMNYWLADQTGLGETQHALWNYMADTWV 440
Query: 425 -NGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMD 483
G++TA++ Y ASGWV+H++ +I+ +A + WA +P AW+ H+W++++YT D
Sbjct: 441 PRGTETARLLYNASGWVVHNEINIFG-FTAMKEDAGWANYPAAAAWMMQHVWDNFDYTHD 499
Query: 484 RDFLEKRAYPLLEGCASFLLDWLIEG---HDGYLETNPSTSPEHEFIAPDGKLACVSYSS 540
+L + Y LL+G ASF L L E +DG L NP SPE P C Y
Sbjct: 500 TAWLVSQGYALLKGIASFWLSSLQEDKFFNDGSLVVNPCNSPE---TGPT-TFGCTHYQQ 555
Query: 541 TMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRL-RPTKIAEDGSIMEW 593
+I +VF +++A E + +++ V+ V +L RL ++ G + EW
Sbjct: 556 -----LIHQVFETVLAAQEYIHESDTKFVDSVASALERLDTGLHLSSWGGLKEW 604
>sp|A2R797|AFCA_ASPNC Probable alpha-fucosidase A OS=Aspergillus niger (strain CBS 513.88
/ FGSC A1513) GN=afcA PE=3 SV=1
Length = 793
Score = 223 bits (567), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 175/593 (29%), Positives = 273/593 (46%), Gaps = 63/593 (10%)
Query: 25 TDAIPIGNGRLGAMVWGGVPSETLKLNEDTLWTGVPGD---YT--NPDAPKA--LSDVRS 77
T A P+GNGRLGAM G E + LN D+LW G P + Y+ NP+ KA L +R
Sbjct: 36 TTAFPLGNGRLGAMPIGSYDKEIVNLNVDSLWRGGPFESPTYSGGNPNVSKAGALPGIRE 95
Query: 78 LVDSGQYAEATAASVKLFG-HPA-DVYQLLGDIELEFDD-SHLKYAEETYRRELDLNTAT 134
+ + T L G +P YQ+L ++ ++ + S + + YRR LDL++A
Sbjct: 96 WI----FQNGTGNVSALLGEYPYYGSYQVLANLTIDMGELSDI----DGYRRNLDLDSAV 147
Query: 135 ARVKYSVGNVEFTREHFSSNPDQVIVTKISGSES-GSLSFNV--SLDSLLDNHSYVNGNN 191
+S G RE F S PD V V ++S + S ++F + L S N S +GN+
Sbjct: 148 YSDHFSTGETYIEREAFCSYPDNVCVYRLSSNSSLPEITFGLENQLTSPAPNVS-CHGNS 206
Query: 192 QIIMEGRCPGKRIPPKANANDDPKGIQFSAILEIKISDDRGTISALEDKKLKV-EGSDWA 250
+ G+ P G+ ++A + + + T +KV EG
Sbjct: 207 ISLY-----GQTYPVI--------GMIYNARVTVVVPGSSNTTDLCSSSTVKVPEGEKEV 253
Query: 251 VLLLVASSSFDGPFINPSDS----KKDPTSESMSALQSIRNLSYSDLYTRHLDDYQKLFH 306
L+ A ++++ N S ++P + + + SYS L + H+ DYQ +F+
Sbjct: 254 FLVFAADTNYEASNGNSKASFSFKGENPYMKVLQTATNAAKKSYSALKSSHVKDYQGVFN 313
Query: 307 RVSIQLSRSPKDIVTDTCSEENIDTVPSAERVKSFQTDEDPSLVELLFQFGRYLLISSSR 366
+ ++ L P+ E + S+ DP + LLF +GRYL ISSSR
Sbjct: 314 KFTLTLP-----------DPNGSADRPTTELLSSYSQPGDPYVENLLFDYGRYLFISSSR 362
Query: 367 PGTQVANLQGIWNEDLSPTWDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSI-N 425
PG+ NLQG+W E SP W H NINL+MN+W L E EPL+ ++ +
Sbjct: 363 PGSLPPNLQGLWTESYSPAWSGDYHANINLQMNHWAVDQTGLGELTEPLWTYMAETWMPR 422
Query: 426 GSKTAQVNYLAS-GWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDR 484
G++TA++ Y S GWV H + + + +A + WA +P AW+ H+W+H++Y+ D
Sbjct: 423 GAETAELLYGTSEGWVTHDEMNTFGH-TAMKDVAQWADYPATNAWMSHHVWDHFDYSQDS 481
Query: 485 DFLEKRAYPLLEGCASFLLDWLIEGH---DGYLETNPSTSPEHEFIAPDGKLACVSYSST 541
+ + YP+L+G A F L L++ DG L NP SPEH C Y
Sbjct: 482 AWYRETGYPILKGAAQFWLSQLVKDEYFKDGTLVVNPCNSPEHGPTLTPQTFGCTHYQQ- 540
Query: 542 MDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLRP-TKIAEDGSIMEW 593
+I E+F ++ ++ + + L P I G I EW
Sbjct: 541 ----LIWELFDHVLQGWTASGDDDTSFKNAITSKFSTLDPGIHIGSWGQIQEW 589
>sp|Q2USL3|AFCA_ASPOR Probable alpha-fucosidase A OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=afcA PE=3 SV=2
Length = 723
Score = 135 bits (341), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 148/606 (24%), Positives = 237/606 (39%), Gaps = 105/606 (17%)
Query: 1 MMNAESTSTTNPLKITFNGPAKHFTDAIPIGNGRLGAMVWGGVPSETLKLNEDTLWTGVP 60
++ S +T N L + +A +GNG+LG M +G +E L LN D LW G P
Sbjct: 6 LLGMSSLATANSLWSSKAASWDTTNEAYTLGNGKLGVMPFGEPGAEKLNLNHDELWEGGP 65
Query: 61 ---GDYTNPDAPKALSDVRSLVDSGQYAEATAASVKLFGHPADV--YQLLGDIELEFDDS 115
Y + +++++ S V + + T +L G + L ++ + D
Sbjct: 66 FEVNGYRGGNPNSSMTEILSEVRDEIWKKGTGNDSRLHGDTDGYGSFHSLANLTIAIDGI 125
Query: 116 HLKYAEETYRRELDLNTATARVKYSVGNVEFTREHFSSNPDQVIVTKISGSESGSLSFNV 175
K ++ Y R LDL T YS G ++T + + S P QV + K++ + + S +
Sbjct: 126 D-KVSD--YTRSLDLGTGIHTTTYSTGKGKYTTDVYCSYPAQVCIYKLNSTATLS-KVTI 181
Query: 176 SLDSLLDNHSYVNGN-NQIIMEGRCPGKRIPPKANANDDPKGIQFSAILEIKISDDRGTI 234
D L++ S N + R + PP+ G+ + I I +
Sbjct: 182 YFDQLVEESSLWNATCDSDFARLRGVTQEGPPR--------GMTYDTIARSSIPGRCDSS 233
Query: 235 SALEDKKLKVEGSDWAVLLLV--ASSSFDG----PFINPSDSKKDPTSESMSALQSIRNL 288
+ KL + + + L +V A + FDG + + +DP S +
Sbjct: 234 TG----KLAINARNSSSLTIVIGAGTDFDGTKGTAATDYTFKGEDPAEYVEKITSSALSQ 289
Query: 289 SYSDLYTRHLDDYQKLFHRVSIQLSRSPKDIVTDTCSEENIDTVPSAERVKSFQTDEDPS 348
S S L T H++DY L ++ L DT + + +TD DP
Sbjct: 290 SESKLRTEHIEDYSGLMSAFTLDLP--------DTQDSTGTELSTLITNYNANKTDGDPY 341
Query: 349 LVELLFQFGRYLLISSSRPGTQVANLQGIWNEDLSPTWDSAPHVNINLEMNYWQSLPCNL 408
L +LLF +GR+L ISSSR + NLQG+W+ + W H NINL+MN W + L
Sbjct: 342 LEKLLFDYGRHLFISSSRANSLPPNLQGVWSPTKNAAWSGDYHANINLQMNLWGAEATGL 401
Query: 409 SECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGA 468
E +F NY+ W+ A+ ++++ GGA
Sbjct: 402 GELTVAVF----------------NYMEQNWM---------PRGAETAELLY-----GGA 431
Query: 469 WLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIA 528
TH + N I GH G L NP TSPE
Sbjct: 432 GWVTH--DEMN---------------------------IFGHTGSLVVNPCTSPEQ---- 458
Query: 529 PDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRL-RPTKIAED 587
++ T +I +V+ I AE+ + + L++ + LPRL + I
Sbjct: 459 -----GPTTFGCTHWQQLIHQVYENAIQGAEIAGETDSTLLKDIKDQLPRLDKGLHIGTW 513
Query: 588 GSIMEW 593
G I EW
Sbjct: 514 GQIKEW 519
>sp|Q1QX66|KDSB_CHRSD 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chromohalobacter
salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB
13768) GN=kdsB PE=3 SV=1
Length = 257
Score = 40.8 bits (94), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 56/130 (43%), Gaps = 31/130 (23%)
Query: 29 PIGNGRLGAMVWGGVPSETLKLNEDTLWTGVPGDYTNPDAPKALSD--VRSLVDSGQYAE 86
P G RL + + L+L+ DT+ V GD P P AL D VR L D
Sbjct: 74 PSGTDRLAEV------AARLELDADTIVVNVQGD--EPLLPPALIDQVVRRLADD----- 120
Query: 87 ATAASVKLFGHPADVYQLLGDIELEFDDSHLKYAEETYRRELDLNTATARVKYSVGNVEF 146
T AS+ P +GD+E F+ + +K + + R L +S V +
Sbjct: 121 -TTASIATLAEP------IGDVETLFNPNVVKVVRDLHGRAL---------YFSRAPVPW 164
Query: 147 TREHFSSNPD 156
REHF++ PD
Sbjct: 165 DREHFATRPD 174
>sp|P28329|CLAT_HUMAN Choline O-acetyltransferase OS=Homo sapiens GN=CHAT PE=1 SV=4
Length = 748
Score = 38.1 bits (87), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Query: 72 LSDVRSLVDSGQYAEATAASVKLFGHPADVYQLLGDIELEFDDSHLKYAEETYRRELDLN 131
L +R LV Q+ ++ A V+ FG P + + L LE + + E + ++ LN
Sbjct: 147 LQCMRHLVSEEQFRKSQAI-VQQFGAPGGLGETLQQKLLERQEKTANWVSEYWLNDMYLN 205
Query: 132 TATARVKYSVGNVEFTREHFSSNPDQVIVTKISGSE-SGSLSFNVSLDSLLDNHS 185
A S V F R+HF DQ+ + + S SG LS+ +LLD+HS
Sbjct: 206 NRLALPVNSSPAVIFARQHFPGTDDQL---RFAASLISGVLSYK----ALLDSHS 253
>sp|P32738|CLAT_RAT Choline O-acetyltransferase OS=Rattus norvegicus GN=Chat PE=1 SV=2
Length = 640
Score = 37.4 bits (85), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 72 LSDVRSLVDSGQYAEATAASVKLFGHPADVYQLLGDIELEFDDSHLKYAEETYRRELDLN 131
L ++ LV Q+ ++ A VK FG P + + L + LE + + E + ++ LN
Sbjct: 39 LQCMQHLVPEEQFRKSQAI-VKRFGAPGGLGETLQEKLLERQEKTANWVSEYWLNDMYLN 97
Query: 132 TATARVKYSVGNVEFTREHFSSNPDQVIVTKISGSESGSLSFNVSLDSLLDNHS 185
A S V F R+HF DQ+ + SG LS+ +LLD+HS
Sbjct: 98 NRLALPVNSSPAVIFARQHFQDTNDQLRFA--ACLISGVLSYK----TLLDSHS 145
>sp|Q03059|CLAT_MOUSE Choline O-acetyltransferase OS=Mus musculus GN=Chat PE=2 SV=2
Length = 641
Score = 37.0 bits (84), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Query: 72 LSDVRSLVDSGQYAEATAASVKLFGHPADVYQLLGDIELEFDDSHLKYAEETYRRELDLN 131
L ++ LV Q+ ++ A VK FG P + + L + LE + + E + ++ LN
Sbjct: 40 LQCMQHLVPEEQFRKSQAI-VKRFGAPGGLGETLQEKLLERQEKTANWVSEYWLNDMYLN 98
Query: 132 TATARVKYSVGNVEFTREHFSSNPDQVIVTKISGSE-SGSLSFNVSLDS 179
A S V F R+HF DQ+ + + S SG LS+ LDS
Sbjct: 99 NRLALPVNSSPAVIFARQHFQDTNDQL---RFAASLISGVLSYKALLDS 144
>sp|Q60HF3|HPS1_MACFA Hermansky-Pudlak syndrome 1 protein homolog OS=Macaca fascicularis
GN=HPS1 PE=2 SV=1
Length = 667
Score = 35.0 bits (79), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 16 TFNGPAKHFTDAIPIGNGRLGAMVW---GGVPSETLKLNEDTLWTGVPGDYTNPDAPKAL 72
+F+ P ++FT A G+ G+ +W G P E L++ EDTL T VP P +P+ +
Sbjct: 260 SFSLPEEYFTPAPSPGDQSSGSTIWLEGGTPPMEALQIAEDTLQTLVP-HCPAPSSPRRI 318
>sp|P13222|CLAT_PIG Choline O-acetyltransferase OS=Sus scrofa GN=CHAT PE=1 SV=3
Length = 641
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 7/114 (6%)
Query: 72 LSDVRSLVDSGQYAEATAASVKLFGHPADVYQLLGDIELEFDDSHLKYAEETYRRELDLN 131
L ++ LV Q+ + A V+ FG P + + L LE + + E + ++ LN
Sbjct: 40 LRCMQHLVPEEQFRRSQAI-VQQFGAPGGLGETLQQKLLERQEQTANWVSEYWLNDMYLN 98
Query: 132 TATARVKYSVGNVEFTREHFSSNPDQVIVTKISGSESGSLSFNVSLDSLLDNHS 185
A S V F R+HF DQ+ + SG LS+ +LLD+HS
Sbjct: 99 NRLALPVNSSPAVIFARQHFQDTNDQLRFA--ANLISGVLSYK----ALLDSHS 146
>sp|Q7T3B2|HRG1A_DANRE Heme transporter hrg1-A OS=Danio rerio GN=slc48a1b PE=2 SV=1
Length = 144
Score = 33.5 bits (75), Expect = 4.7, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 35/65 (53%)
Query: 246 GSDWAVLLLVASSSFDGPFINPSDSKKDPTSESMSALQSIRNLSYSDLYTRHLDDYQKLF 305
G ++VL +VA SF I+ S DPTS +S + S +L +S L T + Y+K F
Sbjct: 76 GVIFSVLSIVAFISFLCVAISRQQSLTDPTSLYLSCVWSFMSLKWSFLLTLYSHRYRKEF 135
Query: 306 HRVSI 310
+SI
Sbjct: 136 ADISI 140
>sp|Q92902|HPS1_HUMAN Hermansky-Pudlak syndrome 1 protein OS=Homo sapiens GN=HPS1 PE=1
SV=2
Length = 700
Score = 33.1 bits (74), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 16 TFNGPAKHFTDAIPIGNGRLGAMVW---GGVPSETLKLNEDTLWTGVP 60
+F+ P ++FT A G+ G+ +W G P + L++ EDTL T VP
Sbjct: 293 SFSLPEEYFTPAPSPGDQSSGSTIWLEGGTPPMDALQIAEDTLQTLVP 340
>sp|O67622|RNY_AQUAE Ribonuclease Y OS=Aquifex aeolicus (strain VF5) GN=rny PE=3 SV=1
Length = 558
Score = 33.1 bits (74), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 97 HPADVYQLLGDIELEFDDSHLKYAEETYRRELDLNTATARVKYSVGNVEFTREHFSSN 154
HPA + +++ +++ EFD+ K EET ELDL+ + Y +G + F R +S N
Sbjct: 318 HPARIEEVVDEVKREFDEKIRKIGEETV-YELDLHDINPGLYYYIGKLYF-RTSYSQN 373
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 234,805,994
Number of Sequences: 539616
Number of extensions: 10086924
Number of successful extensions: 25816
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 25785
Number of HSP's gapped (non-prelim): 21
length of query: 613
length of database: 191,569,459
effective HSP length: 123
effective length of query: 490
effective length of database: 125,196,691
effective search space: 61346378590
effective search space used: 61346378590
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)