Query 007204
Match_columns 613
No_of_seqs 168 out of 1139
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 20:22:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007204.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007204hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14498 Glyco_hyd_65N_2: Glyc 100.0 3.1E-54 6.6E-59 435.9 22.8 231 15-262 1-235 (236)
2 PRK13807 maltose phosphorylase 100.0 4.9E-31 1.1E-35 303.2 42.4 286 242-594 245-563 (756)
3 COG1554 ATH1 Trehalose and mal 100.0 6.8E-31 1.5E-35 293.7 35.7 249 281-583 277-553 (772)
4 PF03632 Glyco_hydro_65m: Glyc 99.9 1.1E-23 2.4E-28 224.5 11.1 190 371-582 22-220 (370)
5 KOG4125 Acid trehalase [Carboh 99.8 2.1E-17 4.5E-22 172.5 29.5 254 278-584 210-478 (682)
6 PF10222 DUF2152: Uncharacteri 98.4 1.8E-05 3.9E-10 89.4 20.5 168 127-316 136-322 (604)
7 TIGR01577 oligosac_amyl oligos 97.9 0.018 3.9E-07 66.7 31.4 143 404-580 308-450 (616)
8 PF04685 DUF608: Protein of un 97.2 0.00063 1.4E-08 73.5 6.3 169 400-580 23-203 (365)
9 PF05592 Bac_rhamnosid: Bacter 96.4 0.011 2.5E-07 66.6 8.9 103 467-580 206-311 (509)
10 TIGR01535 glucan_glucosid gluc 96.2 3.8 8.1E-05 47.8 32.8 217 276-580 210-439 (648)
11 PF06202 GDE_C: Amylo-alpha-1, 92.6 0.75 1.6E-05 49.9 10.4 110 466-580 85-202 (370)
12 COG3387 SGA1 Glucoamylase and 89.8 4.2 9E-05 47.2 13.2 188 368-580 262-453 (612)
13 PF03636 Glyco_hydro_65N: Glyc 87.0 1.4 3.1E-05 45.1 6.4 59 121-179 94-162 (255)
14 TIGR01561 gde_arch glycogen de 84.5 9.1 0.0002 44.0 11.8 93 466-563 349-448 (575)
15 COG4354 Predicted bile acid be 84.4 2.3 4.9E-05 47.8 6.7 190 352-563 325-531 (721)
16 COG3408 GDB1 Glycogen debranch 82.1 13 0.00028 43.4 12.0 149 407-580 300-454 (641)
17 PRK10137 alpha-glucosidase; Pr 78.9 17 0.00037 43.2 11.6 44 467-514 422-465 (786)
18 PLN02567 alpha,alpha-trehalase 69.7 17 0.00037 41.6 8.5 36 468-504 206-241 (554)
19 KOG2119 Predicted bile acid be 65.1 24 0.00052 41.0 8.2 98 471-578 563-666 (879)
20 PF07470 Glyco_hydro_88: Glyco 64.2 21 0.00046 37.9 7.5 153 338-514 77-234 (336)
21 KOG0602 Neutral trehalase [Car 58.7 12 0.00025 42.9 4.4 40 469-509 240-279 (600)
22 PF01204 Trehalase: Trehalase; 56.1 12 0.00026 42.5 4.0 35 469-504 183-217 (512)
23 PRK13271 treA trehalase; Provi 39.4 52 0.0011 37.9 5.7 36 468-505 213-248 (569)
24 PF12439 GDE_N: Glycogen debra 38.6 1.9E+02 0.0041 29.1 9.1 52 124-176 75-127 (223)
25 PRK13272 treA trehalase; Provi 36.4 68 0.0015 36.7 6.0 36 468-505 214-249 (542)
26 cd04791 LanC_SerThrkinase Lant 32.7 3.1E+02 0.0067 28.4 10.1 48 462-514 136-183 (321)
27 TIGR01531 glyc_debranch glycog 31.3 1.6E+02 0.0035 37.5 8.4 39 466-504 1092-1152(1464)
28 KOG3778 Uncharacterized conser 28.3 3E+02 0.0065 30.7 8.8 29 287-316 287-315 (603)
29 PRK09744 DNA-binding transcrip 26.9 21 0.00045 29.6 -0.1 42 549-591 8-51 (75)
30 COG1331 Highly conserved prote 25.5 4.5E+02 0.0097 30.9 10.1 69 436-514 243-317 (667)
31 KOG3403 Translation initiation 25.0 33 0.00071 31.1 0.8 33 13-45 24-57 (145)
32 PF09087 Cyc-maltodext_N: Cycl 20.5 2.4E+02 0.0052 24.2 5.2 44 130-175 25-69 (88)
33 PF07221 GlcNAc_2-epim: N-acyl 20.5 1.8E+02 0.0039 30.8 5.6 102 467-594 83-187 (346)
No 1
>PF14498 Glyco_hyd_65N_2: Glycosyl hydrolase family 65, N-terminal domain; PDB: 2EAE_A 2EAB_B 2EAC_A 2EAD_B 2RDY_A.
Probab=100.00 E-value=3.1e-54 Score=435.93 Aligned_cols=231 Identities=41% Similarity=0.737 Sum_probs=191.2
Q ss_pred EEEcCCCCCccccccccCCcceeeecCCCCcceEEeeccccccCCCCCCCCCCchhhHHHHHHHHhcCChHHHHHHHHhh
Q 007204 15 ITFNGPAKHFTDAIPIGNGRLGAMVWGGVPSETLKLNEDTLWTGVPGDYTNPDAPKALSDVRSLVDSGQYAEATAASVKL 94 (613)
Q Consensus 15 l~y~~PA~~W~ealpiGNGrlGamv~G~~~~e~i~lNe~tlWsg~p~~~~~~~~~~~l~~iR~ll~~g~~~~A~~l~~~~ 94 (613)
|||++||..|+||||||||||||||||++.+|+|+|||+|||+|+|....++++++.|++||+||++|+|++|++|++++
T Consensus 1 Lwy~~PA~~W~ealPiGNG~lGamv~G~~~~E~i~lNe~tlWsg~p~~~~~~~~~~~L~~iR~l~~~g~~~~A~~l~~~~ 80 (236)
T PF14498_consen 1 LWYDKPASDWEEALPIGNGRLGAMVYGGPAKERIQLNEDTLWSGGPSDRTPPDAAEYLPEIRELLFEGDYEEAEELAEEN 80 (236)
T ss_dssp EEESS-GCCHHHSEEEESSSEEEEE---SSEEEEEEEETT-BSSSTTSSSSHHHHHHHHHHHHHHHTT-CCHHHHHHCCS
T ss_pred CccCChhhhhhhhcEecCccceEEecCCCCeEEEEEcchheECCCCccccCccHHHHHHHHHHHHHcCChhHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999888888899999999999999999999999875
Q ss_pred cC-CCC-CCCccceEEEEEecCCCCccCCCCeEEEeeccccEEEEEEEeCCEEEEEEEEeecCCCEEEEEEEeCCCCceE
Q 007204 95 FG-HPA-DVYQLLGDIELEFDDSHLKYAEETYRRELDLNTATARVKYSVGNVEFTREHFSSNPDQVIVTKISGSESGSLS 172 (613)
Q Consensus 95 ~g-~~~-~~y~~~g~L~l~~~~~~~~~~~~~Y~R~LDl~~a~~~v~~~~~g~~~~re~F~S~pd~viv~~i~a~~~~~l~ 172 (613)
++ .+. ++|||+|+|.|++...... +++|+|+|||++|+++|+|+.+|+.|+|++|||+||+|||+||+++++++|+
T Consensus 81 ~~~~~~~~~y~p~g~L~i~~~~~~~~--~~~Y~R~LDl~~a~~~v~~~~~g~~~~re~FaS~pd~viv~r~~~~~~~~l~ 158 (236)
T PF14498_consen 81 FGGEPGYGSYQPLGDLYIDFFPDAGD--VSDYRRELDLETAVATVSYTDGGVRYRREYFASRPDDVIVIRISASKPGGLN 158 (236)
T ss_dssp -B---HH--B---EEEEEEESSSS-----CEEEEEEETTTTEEEEEEEETTEEEEEEEEEETTTTEEEEEEEESSTT-EE
T ss_pred ccCCCccccCCcceEEEEEEeCCCCC--CCcEEEEEEccCcEEEEEEEECCEEEEEEEEEECCCCEEEEEEEcCCCCcEE
Confidence 54 343 7899999999995433333 5699999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCC--CcccccCCCeEEEEeecCCCCCCCCCCCCCCCCCceEEEEEEEEEeCCCeeEEEecCCeEEEeCCcEE
Q 007204 173 FNVSLDSLLD--NHSYVNGNNQIIMEGRCPGKRIPPKANANDDPKGIQFSAILEIKISDDRGTISALEDKKLKVEGSDWA 250 (613)
Q Consensus 173 ~~~~l~~~~~--~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~g~~f~~~~~v~~~g~~G~v~~~~~~~i~v~~a~~v 250 (613)
++++|+++.. ......+++.+++.|++| ..+|++|+++++|+.+| |+|+. .+++|+|++|++|
T Consensus 159 ~~l~l~~~~~~~~~~~~~~~~~l~~~g~~~------------~~~g~~~~~~~~v~~~g--G~v~~-~~~~l~v~~A~~v 223 (236)
T PF14498_consen 159 LTLSLDRPLRTRSAVVTAGGGTLTLRGQAP------------GDNGMRFAGRVRVVATG--GTVTA-DGGGLRVEGADEV 223 (236)
T ss_dssp EEEEEEBSTTSCEEEEEEETTEEEEEEEE-------------TTTS-EEEEEEEEEECC--CECEC-CTTCEEEEEESEE
T ss_pred EEEEecCCcccccceEeecCCEEEEEEEeC------------CCCCeEEEEEEEEEeCC--CEEEe-eCCEEEEeCCCEE
Confidence 9999999863 333345678999999875 24799999999997776 88854 6779999999999
Q ss_pred EEEEEEeecCCC
Q 007204 251 VLLLVASSSFDG 262 (613)
Q Consensus 251 ~i~~~~~t~y~~ 262 (613)
+|++++.|+|++
T Consensus 224 ~l~~~~~T~y~~ 235 (236)
T PF14498_consen 224 TLYVSAATDYRG 235 (236)
T ss_dssp EEEEEEEESEET
T ss_pred EEEEEEEecCCC
Confidence 999999999974
No 2
>PRK13807 maltose phosphorylase; Provisional
Probab=100.00 E-value=4.9e-31 Score=303.18 Aligned_cols=286 Identities=13% Similarity=0.108 Sum_probs=212.5
Q ss_pred EEEeCCcEEEE--EEEEeecCCCCCCCCCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhhccceEEecCCCCCc
Q 007204 242 LKVEGSDWAVL--LLVASSSFDGPFINPSDSKKDPTSESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSRSPKDI 319 (613)
Q Consensus 242 i~v~~a~~v~i--~~~~~t~y~~~~~~~~~~~~d~~~~~~~~l~~a~~~~y~~l~~~H~~~~~~l~~r~~l~L~~~~~~~ 319 (613)
+.++..+.++| ++++.|+-+. ...++...+.+.+..+...+|+.|+++|++.|+++|++++|+|++++.
T Consensus 245 ~~l~~g~~~~leK~v~v~ts~d~-------~~~~~~~~a~~~~~~a~~~g~d~l~~~h~~~w~~~W~~~di~I~gd~~-- 315 (756)
T PRK13807 245 ADVKAGETVTLEKRVIVVTSRDY-------EESELLKAAEDLLNKAAEKGFEELLAAHTAAWAKRWEKSDVVIEGDDA-- 315 (756)
T ss_pred EEEcCCCEEEEEEEEEEEECCCC-------CchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHCCeEEcCCHH--
Confidence 34455555544 4444444321 123456778888888888899999999999999999999999987542
Q ss_pred ccccCCccccCCCChHHHHHhccCCCChHHHHHHHHHHHHHhhhcC--CCCC--C-CCCCccccCCCCCCCCCCCceecc
Q 007204 320 VTDTCSEENIDTVPSAERVKSFQTDEDPSLVELLFQFGRYLLISSS--RPGT--Q-VANLQGIWNEDLSPTWDSAPHVNI 394 (613)
Q Consensus 320 ~~~~~~~~~~~~~pt~~rl~~~~~~~d~~L~~l~f~~gRYLlisss--R~g~--~-P~~LqGiWn~~~~~~W~~~y~~Ni 394 (613)
.|+..+ |..|+|+++. +.+. + |.+|.| + .+.|+++|
T Consensus 316 ---------------~q~alr---------------~~~fhL~~s~~~~~~~~~i~a~GLsg---e----~Y~Gh~FW-- 356 (756)
T PRK13807 316 ---------------AQQGIR---------------FNIFQLFSTYYGEDARLNIGPKGFTG---E----KYGGATYW-- 356 (756)
T ss_pred ---------------HHHHHH---------------HHHHHHHhccCCCCCCCCcCCCCCCc---C----CcCCeeee--
Confidence 455443 4444455543 2222 3 446666 4 57899999
Q ss_pred cccchhccc-ccCCchHhHHHHHHHHHHhhHHHHHHHHHhcCCCCccccccCCcCCccCCCCCCccccc---CcccHHHH
Q 007204 395 NLEMNYWQS-LPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWAL---WPMGGAWL 470 (613)
Q Consensus 395 N~qmnyWpa-~~~nl~E~~~pl~~~~~~l~~~gr~~A~~~yG~~G~~~~~~td~wg~t~p~~~~~~~~~---w~~g~aWl 470 (613)
++++...|. .....||+++.|++|+.+.++.+|++|++ +|++|+++|..+. -|. ..++.|.. -.+-++.+
T Consensus 357 DtE~f~lP~~~~~~~Pe~Ar~lL~YR~~~L~~Ar~~A~~-~g~~GA~yPW~s~-~G~----E~~~~w~~~~~e~HI~adI 430 (756)
T PRK13807 357 DTEAYCVPFYLATADPEVTRNLLKYRYNQLPGAKENAKK-QGLKGALYPMVTF-NGI----ECHNEWEITFEEIHRNGAI 430 (756)
T ss_pred ccchhhhhhhhhccCHHHHHHHHHHHHHhHHHHHHHHHH-cCCCccccceEcC-CCC----cCCCCcCCCceeEechHHH
Confidence 789999998 56799999999999999999999999998 5999999954431 110 11122211 12347999
Q ss_pred HHHHHHHHHhcCCHHHHhhhhHHHHHHHHHHHHHhccccC-CCeE----EeCCCCCCCCcccCCCCCcceeecCchHHHH
Q 007204 471 CTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGH-DGYL----ETNPSTSPEHEFIAPDGKLACVSYSSTMDMA 545 (613)
Q Consensus 471 a~~lw~~y~~T~D~~fL~~~~yP~l~~~A~F~~d~l~~~~-~G~~----v~~Ps~SPEn~~~~~~g~~~~~~~~~t~d~~ 545 (613)
++.+|+||..|+|.+||++.++|+|.|+|+||.+++..++ +|+| |++|+..+|+ ++|++|+|.
T Consensus 431 aya~~~Y~~~TgD~~fl~~~G~e~l~etArfw~s~~~~~~~~~~y~I~~V~GPDEY~~~------------vdNNayTN~ 498 (756)
T PRK13807 431 AYAIYNYTNYTGDESYLKEEGLEVLVEIARFWADRVHFSKRKNKYMIHGVTGPNEYENN------------VNNNWYTNY 498 (756)
T ss_pred HHHHHHHHHHhCCHHHHHhcCHHHHHHHHHHHHHheEEeCCCCeEEECCcccccccCCC------------CCCchhHHH
Confidence 9999999999999999999999999999999999998754 7888 5666655543 689999999
Q ss_pred HHHHHHHHHHHHHHH--------hCCCChHHHHHHHHHhCCCC-CCC--------CCCCCCccccc
Q 007204 546 IIREVFSAIISAAEV--------LEKNEDALVEKVLKSLPRLR-PTK--------IAEDGSIMEWV 594 (613)
Q Consensus 546 ~ir~l~~~~i~a~~~--------Lg~~~~~~~~~w~~~~~~L~-p~~--------i~~~G~l~EW~ 594 (613)
+++++|+.++++++. |+++ ++..++|+++.++|. |+. .+.+-.|.+|.
T Consensus 499 ma~~~l~~A~~~~~~l~~~~~~~l~~~-~~e~~~w~~ia~~~~lp~~~~~gi~~q~dgy~~l~~~d 563 (756)
T PRK13807 499 IAAWTLEYTLENLDKVKKEAPARLNVT-EEELAKWQDIVDKMYLPYDEELGIFVQHDGFLDKDLRP 563 (756)
T ss_pred HHHHHHHHHHHHHHHhchhhHHHhcCC-HHHHHHHHHHHhCeEecccCCCCEEEccCCccccccCc
Confidence 999999999999874 4443 345789999999998 663 23455677876
No 3
>COG1554 ATH1 Trehalose and maltose hydrolases (possible phosphorylases) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.8e-31 Score=293.69 Aligned_cols=249 Identities=17% Similarity=0.226 Sum_probs=194.8
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHhhhccceEEecCCCCCcccccCCccccCCCChHHHHHhccCCCChHHHHHHHHHHHHH
Q 007204 281 ALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSRSPKDIVTDTCSEENIDTVPSAERVKSFQTDEDPSLVELLFQFGRYL 360 (613)
Q Consensus 281 ~l~~a~~~~y~~l~~~H~~~~~~l~~r~~l~L~~~~~~~~~~~~~~~~~~~~pt~~rl~~~~~~~d~~L~~l~f~~gRYL 360 (613)
.+..+.+.+|++|+++|++.|.++|++++|.|+|++. +|+..|| .+|| |
T Consensus 277 ~~~~~~~~~y~~Ll~~h~~aW~~~W~~adI~Iegd~~-----------------~Q~avRf----------nLFh----L 325 (772)
T COG1554 277 LLKLASKGGYEKLLAAHKAAWDDLWEKADIEIEGDPE-----------------AQQAVRF----------NLFH----L 325 (772)
T ss_pred HHHHhhhccHHHHHHHHHHHHHHHHHhcCEEecCCHH-----------------HHHHHHH----------HHHH----H
Confidence 4666778899999999999999999999999998654 6777666 5666 4
Q ss_pred hhhcC----CCCCCCCCCccccCCCCCCCCCCCceecccccchhcccccCCchHhHHHHHHHHHHhhHHHHHHHHHhcCC
Q 007204 361 LISSS----RPGTQVANLQGIWNEDLSPTWDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLA 436 (613)
Q Consensus 361 lisss----R~g~~P~~LqGiWn~~~~~~W~~~y~~NiN~qmnyWpa~~~nl~E~~~pl~~~~~~l~~~gr~~A~~~yG~ 436 (613)
+++.. |-..-|.+|+| + .++|+-.| +++...-|.+..+.||+++.|+.|+...++.+|++|++ +|.
T Consensus 326 ~~~~~~~d~rlsIgaKGltG---e----gY~GhvfW--DTEif~lP~l~~t~P~vArnLL~YR~~~L~~Ak~nA~~-~G~ 395 (772)
T COG1554 326 LQTTPGHDERLSIGAKGLTG---E----GYGGHVFW--DTEIFVLPFLLFTDPEVARNLLLYRYNTLPGAKENAKK-YGL 395 (772)
T ss_pred HhhccCcccCCCCCCCCcCc---c----ccCCeeee--cchHHhhhhhhccChHHHHHHHHHHHhcCHHHHHHHHH-cCC
Confidence 44442 22223557887 4 56787778 78999999999999999999999999999999999998 699
Q ss_pred CCccccccCCcCCc-cCCC----CCCcccccCc-----ccHHHHHHHHHHHHHhcCCHHHHhhhhHHHHHHHHHHHHHhc
Q 007204 437 SGWVIHHKTDIWAK-SSAD----RGKVVWALWP-----MGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWL 506 (613)
Q Consensus 437 ~G~~~~~~td~wg~-t~p~----~~~~~~~~w~-----~g~aWla~~lw~~y~~T~D~~fL~~~~yP~l~~~A~F~~d~l 506 (613)
.|+++|..+---|. ++|. .....|..|+ +-++.+|+.+|.|+.+|||++||++.++++|.|+|+||+++.
T Consensus 396 ~GAlyPW~S~~~G~E~t~~w~~~~~~~~~~~~~~~~E~Hin~dIAyAv~~Y~q~TgD~~yl~~~G~evl~etArFW~srv 475 (772)
T COG1554 396 KGALYPWESATDGDECTPEWEATFERTGWRVASSDREIHINADIAYAVWNYWQVTGDDSYLADCGLEVLLETARFWASRV 475 (772)
T ss_pred CcccceeeecCCCCccCCcccccccccccccCccccceehhhHHHHHHHHHHhhcCcHHHHHhcCHHHHHHHHHHHHHHh
Confidence 99999643311011 1110 0001111222 237899999999999999999999999999999999999999
Q ss_pred ccc-CCCeEE----eCCCCCCCCcccCCCCCcceeecCchHHHHHHHHHHHHHHHHHHH--------hCCCChHHHHHHH
Q 007204 507 IEG-HDGYLE----TNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEV--------LEKNEDALVEKVL 573 (613)
Q Consensus 507 ~~~-~~G~~v----~~Ps~SPEn~~~~~~g~~~~~~~~~t~d~~~ir~l~~~~i~a~~~--------Lg~~~~~~~~~w~ 573 (613)
..+ .+|+|+ |+|+...|| .+|++|+|.|+++.|+.++++.+. |+++ .++..+|+
T Consensus 476 ~~~~~~~~y~I~gV~GPdEY~~~------------InNN~fTN~ma~w~L~~ale~~~~~~~~~~~~l~it-~ee~~~w~ 542 (772)
T COG1554 476 HFSDRNGRYEIHGVTGPDEYHNH------------VNNNAFTNLMAAWNLEYALEILEWLWSELREKLNVT-TEEIEKWA 542 (772)
T ss_pred eecccCCeEEEecCcCchhhhcc------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHHH
Confidence 875 488885 555544443 689999999999999999999883 7885 56789999
Q ss_pred HHhCCCC-CCC
Q 007204 574 KSLPRLR-PTK 583 (613)
Q Consensus 574 ~~~~~L~-p~~ 583 (613)
++.++|. |+.
T Consensus 543 di~~~my~p~d 553 (772)
T COG1554 543 DIAKKMYYPED 553 (772)
T ss_pred HHHHhcCCCCC
Confidence 9999998 553
No 4
>PF03632 Glyco_hydro_65m: Glycosyl hydrolase family 65 central catalytic domain; InterPro: IPR005195 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The family of glycosyl hydrolases (GH65 from CAZY) which contains this domain includes vacuolar acid trehalase and maltose phosphorylase. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. The central domain is the catalytic domain, which binds a phosphate ion that is proximal the the highly conserved Glu. The arrangement of the phosphate and the glutamate is thought to cause nucelophilic attack on the anomeric carbon atom []. The catalytic domain also forms the majority of the dimerisation interface.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1H54_A.
Probab=99.90 E-value=1.1e-23 Score=224.47 Aligned_cols=190 Identities=17% Similarity=0.154 Sum_probs=132.7
Q ss_pred CCCCccccCCCCCCCCCCCceecccccchhcccccCCchHhHHHHHHHHHHhhHHHHHHHHHhcCCCCccccccCCcCCc
Q 007204 371 VANLQGIWNEDLSPTWDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAK 450 (613)
Q Consensus 371 P~~LqGiWn~~~~~~W~~~y~~NiN~qmnyWpa~~~nl~E~~~pl~~~~~~l~~~gr~~A~~~yG~~G~~~~~~td~wg~ 450 (613)
|.+|.| + .+.|+++| ++++...|......||+++.|++|+.+.++.+|++|++ +|++|+++|..+..-|.
T Consensus 22 a~GLsg---e----~Y~Gh~FW--DtE~~~~P~~~~~~Pe~Ar~lL~YR~~~L~~Ar~~A~~-~g~~GA~yPWeS~~~G~ 91 (370)
T PF03632_consen 22 AKGLSG---E----GYKGHVFW--DTEIFMLPFFLLTHPEAARSLLNYRYRTLPQARENARE-YGYKGAMYPWESARTGE 91 (370)
T ss_dssp TTTTS----S----TTTTSB-T--HHHHCHHHHHHHS-HHHHHHHHHHHHTTHHHHHHHHHC-TT--S----SSBSS-SS
T ss_pred CCCCCC---C----CcCCeeee--cchHHhcchHhhcCHHHHHHHHHHHHHHHHHHHHHHHH-cCCCcceeecccccCcc
Confidence 336666 4 57899999 78999999999999999999999999999999999998 59999999655543331
Q ss_pred cCCCCCCcccc---cCcccHHHHHHHHHHHHHhcCCHHHHhhhhHHHHHHHHHHHHHhccccC-CCeEEeCCCCCCCCcc
Q 007204 451 SSADRGKVVWA---LWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGH-DGYLETNPSTSPEHEF 526 (613)
Q Consensus 451 t~p~~~~~~~~---~w~~g~aWla~~lw~~y~~T~D~~fL~~~~yP~l~~~A~F~~d~l~~~~-~G~~v~~Ps~SPEn~~ 526 (613)
-. ...|. .-.+-++.+++.+|+||..|+|.+||++.++|+|+|+|+||.+++..++ +|+|++...+.|...
T Consensus 92 E~----t~~~~~~~~e~Hi~adIa~a~~~Y~~~TgD~~~l~~~g~eil~etArfw~sr~~~~~~~g~y~i~~V~GPDEY- 166 (370)
T PF03632_consen 92 EC----TGPWPAGDYEIHINADIAYAIWQYYQATGDEEFLREYGAEILFETARFWASRVEYNEDTGRYEIRNVTGPDEY- 166 (370)
T ss_dssp B--------HHHHTT-THHHHHHHHHHHHHHHHH---TTTTTHHHHHHHHHHHHHHHH-EEETTTTEEE--SB--SSTT-
T ss_pred cc----CCCCCchHhhhcchHHHHHHHHHHHHhCCcHHHHHccCHHHHHHHHHHHHHheEEcCCCCeEEecccCchhcc-
Confidence 10 01111 1122478999999999999999999999999999999999999999887 499976666665321
Q ss_pred cCCCCCcceeecCchHHHHHHHHHHHHHHHHHHHhCCC----ChHHHHHHHHHhCCCC-CC
Q 007204 527 IAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKN----EDALVEKVLKSLPRLR-PT 582 (613)
Q Consensus 527 ~~~~g~~~~~~~~~t~d~~~ir~l~~~~i~a~~~Lg~~----~~~~~~~w~~~~~~L~-p~ 582 (613)
...++|++|+|.++++.|+.++++++.++.. +++..++|+++.++|. |+
T Consensus 167 -------~~~V~NnayTN~ma~~~L~~A~~~~~~~~~~~l~~~~~e~~~W~~ia~~i~lP~ 220 (370)
T PF03632_consen 167 -------HENVDNNAYTNAMAKWNLRLAAEAAERLGEEKLGLTEEEPEKWKEIADKIYLPY 220 (370)
T ss_dssp -------S-SBS--HHHHHHHHHHHHHHHHHHTTS-HHHHT--HHHHHHHHHHHHTB---E
T ss_pred -------cCCCCCcHHHHHHHHHHHHHHHHHHHHCchhhcCCCHHHHHHHHHHHhcCCcCc
Confidence 1237899999999999999999999877632 2346789999999998 55
No 5
>KOG4125 consensus Acid trehalase [Carbohydrate transport and metabolism]
Probab=99.81 E-value=2.1e-17 Score=172.47 Aligned_cols=254 Identities=12% Similarity=0.147 Sum_probs=179.2
Q ss_pred HHHHHHHhhcCCHH-HHHHHHHHHHHhhhccceEEecCCCCCcccccCCccccCCCChHHHHHhccCCCChHHHHHHHHH
Q 007204 278 SMSALQSIRNLSYS-DLYTRHLDDYQKLFHRVSIQLSRSPKDIVTDTCSEENIDTVPSAERVKSFQTDEDPSLVELLFQF 356 (613)
Q Consensus 278 ~~~~l~~a~~~~y~-~l~~~H~~~~~~l~~r~~l~L~~~~~~~~~~~~~~~~~~~~pt~~rl~~~~~~~d~~L~~l~f~~ 356 (613)
+...|..+.+..-+ .|++.|.+.|..||+...+++.++ - +++..-..
T Consensus 210 t~~~L~~~LQL~s~g~Ll~~H~QaW~~lW~d~f~~~~~~--------------------L------------~L~Q~~r~ 257 (682)
T KOG4125|consen 210 TNIGLAKMLQLNSKGKLLSSHKQAWYDLWNDAFIEIPSD--------------------L------------LLEQTARS 257 (682)
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHhhhhccCcH--------------------H------------HHHHHHhh
Confidence 33444444444333 899999999999999887765431 1 11223345
Q ss_pred HHHHhhhcC-C---C-----CCCCCCCccccCCCCCCCCCCCceecccccchhcccccCCchHhHHHHHHHHHHhhHHHH
Q 007204 357 GRYLLISSS-R---P-----GTQVANLQGIWNEDLSPTWDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGS 427 (613)
Q Consensus 357 gRYLlisss-R---~-----g~~P~~LqGiWn~~~~~~W~~~y~~NiN~qmnyWpa~~~nl~E~~~pl~~~~~~l~~~gr 427 (613)
|.|-|.|+- . + |-.|. |+-|+....-+.|+-.|+-++-| .|+...-.||.++.++.|+.+.++.++
T Consensus 258 slfYllS~LPqpk~~n~~~~GLSP~---GLsnG~~E~~Y~GHvFWD~diWM--~P~il~F~p~~A~~~L~YR~RtL~~Ak 332 (682)
T KOG4125|consen 258 SLFYLLSNLPQPKDYNVSSDGLSPV---GLSNGLSEDSYGGHVFWDADIWM--EPALLPFFPNVAQNMLNYRNRTLSQAK 332 (682)
T ss_pred hhhhHhhcCCCcCCCCccccCcCcc---cccCCcchhhcCCceeecchhhh--hhhhhhcCHHHHHHHHHhhhhhHHHHH
Confidence 555566653 1 1 22344 44455444556666667555544 588888899999999999999999999
Q ss_pred HHHHHhcCCCCccccccCCcCCcc--CC-CCCCcccccCcccHHHHHHHHHHHHHhcCCHHHHhhhhHHHHHHHHHHHHH
Q 007204 428 KTAQVNYLASGWVIHHKTDIWAKS--SA-DRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLD 504 (613)
Q Consensus 428 ~~A~~~yG~~G~~~~~~td~wg~t--~p-~~~~~~~~~w~~g~aWla~~lw~~y~~T~D~~fL~~~~yP~l~~~A~F~~d 504 (613)
.+|+. +|+.|+.++..+---|.. .+ .-+....+. +..++..+=-||.-|.|.+|++-.+||+++.+|+||.+
T Consensus 333 ~nA~~-~GY~GA~FpWESA~~G~EV~~e~~~~~QE~Hi----n~dv~~Af~~y~h~~~D~e~~~~t~Wpi~~~VA~F~~S 407 (682)
T KOG4125|consen 333 LNAEK-YGYPGAIFPWESAKYGNEVSTEGPCVDQEYHI----NVDVAMAFSIYLHEGIDDEYLRYTTWPIIKNVAQFFTS 407 (682)
T ss_pred hhHHh-cCCCCccccccccccccccCCCCCceeEEEEe----cHHHHHHHHHHHHhccchhhhccCCchhHHHHHHHhhh
Confidence 99998 699999985433222211 11 011112222 45666667678889999999999999999999999999
Q ss_pred hccccC-CCeEEeCCCCCCCCcccCCCCCcceeecCchHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCCCC-CC
Q 007204 505 WLIEGH-DGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLR-PT 582 (613)
Q Consensus 505 ~l~~~~-~G~~v~~Ps~SPEn~~~~~~g~~~~~~~~~t~d~~~ir~l~~~~i~a~~~Lg~~~~~~~~~w~~~~~~L~-p~ 582 (613)
+...++ .++|+.--..+|... . +-++|+.|++++++-+|+-+...|+.||.. ..++|.++.++|. |.
T Consensus 408 Rv~~~~s~~~yHL~nVM~PDE~--H------~~VNn~VYTNa~~k~~L~FA~~LA~hlG~~---~~~kW~eVsD~i~ipr 476 (682)
T KOG4125|consen 408 RVKYNSSLGLYHLYNVMDPDEF--H------NHVNNGVYTNAGIKTLLKFATDLANHLGEV---VDPKWSEVSDDIYIPR 476 (682)
T ss_pred eeEecCccceeeeeccCCchhc--c------cccccchhhhHHHHHHHHHHHHHHHhhCCc---cChhHHHhccCceecc
Confidence 998776 788877666676421 0 127899999999999999999999999963 4589999999997 55
Q ss_pred CC
Q 007204 583 KI 584 (613)
Q Consensus 583 ~i 584 (613)
.+
T Consensus 477 Dv 478 (682)
T KOG4125|consen 477 DV 478 (682)
T ss_pred cc
Confidence 44
No 6
>PF10222 DUF2152: Uncharacterized conserved protein (DUF2152); InterPro: IPR018795 This entry includes mainly uncharacterised proteins, though some are described as belonging to the glycoside hydrolase family 65.
Probab=98.42 E-value=1.8e-05 Score=89.36 Aligned_cols=168 Identities=13% Similarity=0.173 Sum_probs=93.8
Q ss_pred EeeccccEEEEEEEe----CCEEEEEEEEeecC-CCEEEEEEEeCCCCceEEEEEeccCCCCcc--------cccC--CC
Q 007204 127 ELDLNTATARVKYSV----GNVEFTREHFSSNP-DQVIVTKISGSESGSLSFNVSLDSLLDNHS--------YVNG--NN 191 (613)
Q Consensus 127 ~LDl~~a~~~v~~~~----~g~~~~re~F~S~p-d~viv~~i~a~~~~~l~~~~~l~~~~~~~~--------~~~~--~~ 191 (613)
-+|+.+|.++.--+. ++..++-++++++. .+|+|.+|+-+.|....+++.+..+....- ...+ ..
T Consensus 136 vv~fr~G~V~~~qC~~~~~~cv~Vs~~~YAHRTrPnLLVQeI~ItNP~~~~vtv~Ls~~~~~~~~~~~~~~~~~~~~~~e 215 (604)
T PF10222_consen 136 VVDFRNGIVHRVQCFKSERDCVCVSQQYYAHRTRPNLLVQEIQITNPTNRDVTVELSSPRSSNWPNSFSSSIEKVSDSHE 215 (604)
T ss_pred EEEEecCeEEEEEEEeecCCceEEEEEEEEecccCcEEEEEEEEECCCCCcEEEEEeCCCCCCccccceeEEEEecCCcc
Confidence 488889998765344 78889999999997 699998888877766666666655432110 0011 12
Q ss_pred eEEEEeecCCCCCCCCCCCCCCCCCceEEEEEEEEEeCCCeeEEEecCCeEEEeCCcEEE--EEEEEeecCCCCCCCCCC
Q 007204 192 QIIMEGRCPGKRIPPKANANDDPKGIQFSAILEIKISDDRGTISALEDKKLKVEGSDWAV--LLLVASSSFDGPFINPSD 269 (613)
Q Consensus 192 ~l~~~g~~~~~~~~~~~~~~~~~~g~~f~~~~~v~~~g~~G~v~~~~~~~i~v~~a~~v~--i~~~~~t~y~~~~~~~~~ 269 (613)
..+.+|..+.. .++-. ..+.|+... -.++|+|++-++.. ++.++.++-.-...+...
T Consensus 216 ~~v~sG~V~~~-----------~~~~~--i~VaVv~~k--------lP~~iqV~~ks~~~~~~ltvV~yS~Pi~~~~~~~ 274 (604)
T PF10222_consen 216 YQVSSGKVPPP-----------EDSKV--IVVAVVTKK--------LPSTIQVKAKSETKLTFLTVVNYSEPIDESKYKE 274 (604)
T ss_pred EEEEEEEEcCC-----------CCCcE--EEEEEEeCC--------CCCCEEECCCceEEEEEEEEEEEeccccchhhhh
Confidence 23344443210 11111 111221111 13478887665553 444443332100000000
Q ss_pred CCCChHHHHHHHHHHhhc--CCHHHHHHHHHHHHHhhhccceEEecCCC
Q 007204 270 SKKDPTSESMSALQSIRN--LSYSDLYTRHLDDYQKLFHRVSIQLSRSP 316 (613)
Q Consensus 270 ~~~d~~~~~~~~l~~a~~--~~y~~l~~~H~~~~~~l~~r~~l~L~~~~ 316 (613)
..+...+.+.+.+.++.. .+.+.|+++|++.|++||. +.+.++.+.
T Consensus 275 ~~~~l~~~a~~em~~ll~~~~~~~~L~~eH~~aW~~Lw~-SG~~Is~sk 322 (604)
T PF10222_consen 275 TFEALEEQAKKEMKELLQSGMSVEDLLQEHVDAWSDLWS-SGFEISKSK 322 (604)
T ss_pred HHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhh-ccccccccc
Confidence 011122345556666665 7899999999999999998 677776553
No 7
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=97.89 E-value=0.018 Score=66.65 Aligned_cols=143 Identities=15% Similarity=0.184 Sum_probs=87.7
Q ss_pred ccCCchHhHHHHHHHHHHhhHHHHHHHHHhcCCCCccccccCCcCCccCCCCCCcccccCcccHHHHHHHHHHHHHhcCC
Q 007204 404 LPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMD 483 (613)
Q Consensus 404 ~~~nl~E~~~pl~~~~~~l~~~gr~~A~~~yG~~G~~~~~~td~wg~t~p~~~~~~~~~w~~g~aWla~~lw~~y~~T~D 483 (613)
...+.+|.++.+++|+.+... ..|...| +..+-|...|. .|..-.-..+.....+|+||++|+|
T Consensus 308 ~~~G~~~~a~~~l~~l~~~q~-----------~~G~~~~-~~~~dG~~~~~----~~~~Q~D~~g~~l~al~~y~~~t~d 371 (616)
T TIGR01577 308 DRAGYHDRVDRFFRWAMQTQS-----------RDGSWQQ-RYYLNGRLAPL----QWGLQIDETGSILWAMDQHYRLTND 371 (616)
T ss_pred HHCCCHHHHHHHHHHHHHhhC-----------cCCCcce-EEecCCCCCCC----CCCccccchhHHHHHHHHHHHHHCC
Confidence 356788999999999876532 2443322 11111111110 0111111123344478899999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhccccCCCeEEeCCCCCCCCcccCCCCCcceeecCchHHHHHHHHHHHHHHHHHHHhCC
Q 007204 484 RDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEK 563 (613)
Q Consensus 484 ~~fL~~~~yP~l~~~A~F~~d~l~~~~~G~~v~~Ps~SPEn~~~~~~g~~~~~~~~~t~d~~~ir~l~~~~i~a~~~Lg~ 563 (613)
.+|+++ .||.++.+++|..+.... ++. -|+.. -+-...|. .+++.+++...|..+++.++.+|.
T Consensus 372 ~~~~~~-~~~~v~~a~~fl~~~~~~--~l~---~~~~~---lWEer~G~-------~~~t~a~~~aAL~~aa~lA~~lGd 435 (616)
T TIGR01577 372 RAFLEE-IWESVQKAAQYLILFIDP--ETP---LPCRD---LWEEREGV-------FTYTASAVYGGLDAAAAVADKLGE 435 (616)
T ss_pred HHHHHH-HHHHHHHHHHHHHHhccC--CCC---CCCCc---cceecCCc-------cCccHHHHHHHHHHHHHHHHHcCC
Confidence 999985 799999999999986522 111 12211 11111121 567789999999999999999996
Q ss_pred CChHHHHHHHHHhCCCC
Q 007204 564 NEDALVEKVLKSLPRLR 580 (613)
Q Consensus 564 ~~~~~~~~w~~~~~~L~ 580 (613)
+ +..++|++.++++.
T Consensus 436 ~--~~a~~~~~~Ad~ik 450 (616)
T TIGR01577 436 K--RLAQNWKKAAEFIK 450 (616)
T ss_pred h--HHHHHHHHHHHHHH
Confidence 3 45678888777764
No 8
>PF04685 DUF608: Protein of unknown function, DUF608; InterPro: IPR006775 This domain is found in non-lysosomal glucosylceramidases that catalyze the conversion of glucosylceramide to free glucose and ceramide []. It is involved in sphingomyelin generation and prevention of glycolipid accumulation and may also catalyze the hydrolysis of bile acid 3-O-glucosides, however, the relevance of such activity is unclear in vivo []. ; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0016021 integral to membrane; PDB: 1V7V_A 1V7W_A 1V7X_A.
Probab=97.16 E-value=0.00063 Score=73.46 Aligned_cols=169 Identities=20% Similarity=0.266 Sum_probs=51.7
Q ss_pred hcccccCCchHhHHHHHHHHHHh-hHHHHHHHHHhc-------CCCCccccccC----CcCCccCCCCCCcccccCcccH
Q 007204 400 YWQSLPCNLSECQEPLFDFLTYL-SINGSKTAQVNY-------LASGWVIHHKT----DIWAKSSADRGKVVWALWPMGG 467 (613)
Q Consensus 400 yWpa~~~nl~E~~~pl~~~~~~l-~~~gr~~A~~~y-------G~~G~~~~~~t----d~wg~t~p~~~~~~~~~w~~g~ 467 (613)
+-.+.....||+.+.+..-.-.. .......-+.++ -.+|.+-|.-. +||..+....- .....|--..
T Consensus 23 ~s~al~~lfP~Le~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~G~vphdlg~p~~~P~~~~n~y~~-~~~~~~~D~~ 101 (365)
T PF04685_consen 23 ASFALLKLFPELERSMQRDFADAILSEDNTERKILYDGKIAPRKVRGAVPHDLGSPFDDPWDRTNAYNY-HDVYAWKDLN 101 (365)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence 55666778888888766544332 222111111110 13466655433 34544321100 0122344567
Q ss_pred HHHHHHHHHHHHhcCCHHHHhhhhHHHHHHHHHHHHHhccccCCCeEEeCCCCCCCCcccCCCCCcceeecCchHHHHHH
Q 007204 468 AWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAII 547 (613)
Q Consensus 468 aWla~~lw~~y~~T~D~~fL~~~~yP~l~~~A~F~~d~l~~~~~G~~v~~Ps~SPEn~~~~~~g~~~~~~~~~t~d~~~i 547 (613)
.+....+|.+|..|||.+||+ ..||.++.+.+|...+ ..+.|| +..++ -.|+|++. .-. +.--++|...+.
T Consensus 102 ~~fVL~vyr~~~~TGD~~fL~-~~wp~v~~a~~~~~~~-D~d~dG-l~e~~-g~~D~TyD---~~~--~~G~say~~~L~ 172 (365)
T PF04685_consen 102 PKFVLQVYRDYKWTGDRDFLK-EMWPAVKKAMDYLLSW-DRDGDG-LPENP-GHPDQTYD---DWS--MYGPSAYCGGLW 172 (365)
T ss_dssp ----------------------EHHHHHHHHHHHHHHS-B--TTS--BEEE-T---SSST---T-E--EEEEEHHHHHHH
T ss_pred ccccccccccccccccchhhh-hHHHHHHHHHHHHHhh-CCCCCC-CCCCC-CCCccccc---cCC--eeCCCHHHHHHH
Confidence 788899999999999999998 5899999999999984 334477 32222 22345442 111 222378899999
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHhCCCC
Q 007204 548 REVFSAIISAAEVLEKNEDALVEKVLKSLPRLR 580 (613)
Q Consensus 548 r~l~~~~i~a~~~Lg~~~~~~~~~w~~~~~~L~ 580 (613)
-..|+.+++++++||. .+..+++++.+++..
T Consensus 173 laAL~A~~emA~~lgd--~~~a~~y~~~~~~~~ 203 (365)
T PF04685_consen 173 LAALRAAAEMAKILGD--PELAAKYRELAEKAK 203 (365)
T ss_dssp HHHHHHHHHHHHHHT---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHH
Confidence 9999999999999995 345677777766543
No 9
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=96.36 E-value=0.011 Score=66.56 Aligned_cols=103 Identities=23% Similarity=0.263 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHhhhhHHHHHHHHHHHHHhccccCC--CeEEeCCCCC-CCCcccCCCCCcceeecCchHH
Q 007204 467 GAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHD--GYLETNPSTS-PEHEFIAPDGKLACVSYSSTMD 543 (613)
Q Consensus 467 ~aWla~~lw~~y~~T~D~~fL~~~~yP~l~~~A~F~~d~l~~~~~--G~~v~~Ps~S-PEn~~~~~~g~~~~~~~~~t~d 543 (613)
+.+....+|+||+||||++||+ +.||.|+...+|+..+...... ...... +.. |... ....+...+..
T Consensus 206 ~l~~i~~~~~~y~~tGD~~~l~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-DW~~~~~~-------~~~~~~~~~~~ 276 (509)
T PF05592_consen 206 SLAWIIIPWDYYLYTGDREFLE-EYYPAMKRYLDYLERRVDDGLDGLPGWGFG-DWLAPGND-------GDGPTPGATIT 276 (509)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHH-HHHHHHHHHHHHHHTTB-TSSB-CCSB--S--SS----T-------T---SCCEEHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHHHHHHHhCCccccCCCCCcee-ecCCccCc-------ccccchHHHHH
Confidence 3466789999999999999998 4899999999999887654100 001111 111 1110 01123456778
Q ss_pred HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCCCC
Q 007204 544 MAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLR 580 (613)
Q Consensus 544 ~~~ir~l~~~~i~a~~~Lg~~~~~~~~~w~~~~~~L~ 580 (613)
+++.-..++.+.++++.||.+ +..++|++.+++|.
T Consensus 277 ~~~~~~~l~~~a~lA~~lg~~--~~a~~y~~~a~~lk 311 (509)
T PF05592_consen 277 NALYYYALRAAAELAEALGKD--EDAAEYRARAERLK 311 (509)
T ss_dssp HHHHHHHHHHHHHHHHHCT-H--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHH
Confidence 899999999999999999963 33667777766654
No 10
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=96.17 E-value=3.8 Score=47.79 Aligned_cols=217 Identities=17% Similarity=0.186 Sum_probs=117.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHhhhccceEEecCCCCCcccccCCccccCCCChHHHHHhccCCCChHHHHHHHH
Q 007204 276 SESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSRSPKDIVTDTCSEENIDTVPSAERVKSFQTDEDPSLVELLFQ 355 (613)
Q Consensus 276 ~~~~~~l~~a~~~~y~~l~~~H~~~~~~l~~r~~l~L~~~~~~~~~~~~~~~~~~~~pt~~rl~~~~~~~d~~L~~l~f~ 355 (613)
..+.+.+..+...+|+.++++-+..|+++-.+.. .+.+ + +.+++..
T Consensus 210 ~~a~~~~~~~l~~g~~~~~~~~~~~W~~w~~~~~-~~~~--------------------~-------------~~~~~~r 255 (648)
T TIGR01535 210 YEAAKTAVATLKEGYRRVKDAYIDEWEKYLNSLN-NFNG--------------------K-------------GNSLYYV 255 (648)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-cCCc--------------------h-------------HHHHHHH
Confidence 3455666667778999999999999999887641 1211 1 1111211
Q ss_pred HHHHHhhhcC--CCCCCCCCCccccCCCCCCCCCCCceecccccchhccc---------ccCCchHhHHHHHHHHHHhhH
Q 007204 356 FGRYLLISSS--RPGTQVANLQGIWNEDLSPTWDSAPHVNINLEMNYWQS---------LPCNLSECQEPLFDFLTYLSI 424 (613)
Q Consensus 356 ~gRYLlisss--R~g~~P~~LqGiWn~~~~~~W~~~y~~NiN~qmnyWpa---------~~~nl~E~~~pl~~~~~~l~~ 424 (613)
.-.=|..... ..|++.|.++=-|.+..--.=+.+|+. .||= ...+..|.++.+|+|+.+...
T Consensus 256 S~lvLK~~~d~~~~GAiIAA~Tts~pe~~g~~~n~dYry-------vW~RD~a~~a~AL~~~G~~~~a~~~~~~l~~~~~ 328 (648)
T TIGR01535 256 SMMILKAHEDKTNPGAYIASLSIPWGDGQADDNTGGYHL-------VWPRDLYQVANAFLAAGDVDSALRSLDYLAKVQQ 328 (648)
T ss_pred HHHHHHHhcCCCCCCcEEEecCCCCCccCCCCCCCceEE-------EehhhHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 1111112222 347776666555654321110135664 5664 356788999999999987643
Q ss_pred -HHHHHHHHhcCCCCccccccCCcCCccCCCCCCcccccCcc-cHHHHHHHHHHHHHhcCCHHHHhhhhHHHHHHHHHHH
Q 007204 425 -NGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPM-GGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFL 502 (613)
Q Consensus 425 -~gr~~A~~~yG~~G~~~~~~td~wg~t~p~~~~~~~~~w~~-g~aWla~~lw~~y~~T~D~~fL~~~~yP~l~~~A~F~ 502 (613)
.|.. -+. |+..|- +.|.--+. .-+.+...+|.+++. +.. ..+++++.+|+|.
T Consensus 329 ~~G~~-lq~-y~vdG~------------------~~~~~iQlD~~g~~i~~~~~l~~~--~~~----~~~~~vk~aadfl 382 (648)
T TIGR01535 329 DNGMF-PQN-SWVDGK------------------PYWTGIQLDETAFPILLAYRLHRY--DHA----FYDKMLKPAADFI 382 (648)
T ss_pred cCCCc-Cce-eccCCC------------------CCCCCccccHHHHHHHHHHHHHHc--CcH----HHHHHHHHHHHHH
Confidence 2211 111 223321 11110111 112222233444443 222 2579999999999
Q ss_pred HHhccccCCCeEEeCCCCCCCCcccCCCCCcceeecCchHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCCCC
Q 007204 503 LDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLR 580 (613)
Q Consensus 503 ~d~l~~~~~G~~v~~Ps~SPEn~~~~~~g~~~~~~~~~t~d~~~ir~l~~~~i~a~~~Lg~~~~~~~~~w~~~~~~L~ 580 (613)
...--.-..|.+. |+ .| -.+++.+.+--.|..+++.++.+|.+ +..++|++.++++.
T Consensus 383 ~~~~p~p~~d~WE-------er-----~g-------~~~~T~a~v~aaL~~Aa~iA~~~g~~--~~a~~w~~~Ad~i~ 439 (648)
T TIGR01535 383 VKNGPKTGQERWE-------EI-----GG-------YSPSTLAAEIAGLTAAADIAEQNGDA--GSAQKYRETADNWQ 439 (648)
T ss_pred HHcCCCCCCCccc-------cc-----CC-------cCchhHHHHHHHHHHHHHHHHHcCCc--HHHHHHHHHHHHHH
Confidence 8853111123331 11 11 13455566668889999999999963 35788888776653
No 11
>PF06202 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR010401 This family includes human glycogen branching enzyme P35573 from SWISSPROT. This enzyme contains a number of distinct catalytic activities. It has been shown for the yeast homologue O93808 from SWISSPROT that mutations in this region disrupt the enzymes Amylo-alpha-1,6-glucosidase (3.2.1.33 from EC).; GO: 0004135 amylo-alpha-1,6-glucosidase activity, 0005978 glycogen biosynthetic process
Probab=92.61 E-value=0.75 Score=49.93 Aligned_cols=110 Identities=21% Similarity=0.298 Sum_probs=65.9
Q ss_pred cHHHHHHHHHHHHHhcCCHHHHhhhhHHHHHHHHHHHHHhcc----cc-CCCeEEeCCCCCCCCcccCC--CCCcceeec
Q 007204 466 GGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLI----EG-HDGYLETNPSTSPEHEFIAP--DGKLACVSY 538 (613)
Q Consensus 466 g~aWla~~lw~~y~~T~D~~fL~~~~yP~l~~~A~F~~d~l~----~~-~~G~~v~~Ps~SPEn~~~~~--~g~~~~~~~ 538 (613)
...|....+.+|+++|+|.+||+ +.+|.|+++.+.+.+... .+ ++| ++....-..-.++.+. +|....--.
T Consensus 85 at~wfl~~l~~Y~~~t~D~~~l~-~~~~~i~~il~~~~~g~~~~~~~d~~~g-l~~~~~~~~~~tWmD~~~~g~~~tpr~ 162 (370)
T PF06202_consen 85 ATLWFLIALQEYYRWTGDYSFLR-ELYPAIEEILEWYADGTDFGIRVDPEDG-LIYSGNGLNNQTWMDARNDGRPVTPRD 162 (370)
T ss_pred cHHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHHHHHHhCCCCccccccCCC-eeecCCCCCCCCccccccCCccccCCC
Confidence 45799999999999999999997 589999999999877443 23 245 4433321112223221 111110011
Q ss_pred CchHH-HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCCCC
Q 007204 539 SSTMD-MAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLR 580 (613)
Q Consensus 539 ~~t~d-~~~ir~l~~~~i~a~~~Lg~~~~~~~~~w~~~~~~L~ 580 (613)
+...+ |+++...++.+.+.++..+.+ ...+|++..++|.
T Consensus 163 g~~vEIqal~y~AL~~~~~la~~~~~~---~a~~~~~~A~~lk 202 (370)
T PF06202_consen 163 GAAVEIQALWYNALRFAAELAEKFGDE---LAARYREWAERLK 202 (370)
T ss_pred CcchHHHHHHHHHHHHHHHHHhhcCCc---hHHHHHHHHHHHH
Confidence 23333 456777777777777765532 3455666555553
No 12
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=89.78 E-value=4.2 Score=47.16 Aligned_cols=188 Identities=16% Similarity=0.067 Sum_probs=115.3
Q ss_pred CCCCCCCccccCCCCCCCCCC-Ccee--cccccchhcccccCCchHhHHHHHHHHHHhhH-HHHHHHHHhcCCCCccccc
Q 007204 368 GTQVANLQGIWNEDLSPTWDS-APHV--NINLEMNYWQSLPCNLSECQEPLFDFLTYLSI-NGSKTAQVNYLASGWVIHH 443 (613)
Q Consensus 368 g~~P~~LqGiWn~~~~~~W~~-~y~~--NiN~qmnyWpa~~~nl~E~~~pl~~~~~~l~~-~gr~~A~~~yG~~G~~~~~ 443 (613)
|.+-+++...|.+. .++. ||+. .=+.-..-+.....+..+.+...|.|+.+... .+. -..+|...|. +
T Consensus 262 G~ivAs~t~~l~~~---~~g~~dY~y~W~RD~~~~~~AL~~~G~~~~a~~~f~~l~~~~~~~~~--~~~~y~~~g~---~ 333 (612)
T COG3387 262 GAIVASPTTSLPEL---IGGTRDYRYVWPRDASYAALALLAIGYKKEALRFFEFLPDVQTPNGK--LYHKYSIDGS---D 333 (612)
T ss_pred CcEEEcCCCCcccc---CCCCCCceEEccCcHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCc--eeeEEecCCC---c
Confidence 77666666666643 2222 3543 11111111222356777888888888887643 343 2334566664 2
Q ss_pred cCCcCCccCCCCCCcccccCcccHHHHHHHHHHHHHhcCCHHHHhhhhHHHHHHHHHHHHHhccccCCCeEEeCCCCCCC
Q 007204 444 KTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPE 523 (613)
Q Consensus 444 ~td~wg~t~p~~~~~~~~~w~~g~aWla~~lw~~y~~T~D~~fL~~~~yP~l~~~A~F~~d~l~~~~~G~~v~~Ps~SPE 523 (613)
-...|-. .. ........+....++...+++.|++...|..+.......+.+.++.|... +.....+ -..|+.+
T Consensus 334 ~~~~w~~-~~-~~~~~~pv~~~~~a~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~p~~~-- 406 (612)
T COG3387 334 LAESWLP-VS-GYYNSFPVRIGNTALVQGALDVYGSIMNDIYFYAKYYAIYILPAADYLRR-MEKIKAN--LPTPDFD-- 406 (612)
T ss_pred ccccccc-cc-CCCCCCceEEcchhhHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH-HHhhhcC--CCCCccc--
Confidence 2223322 11 11122335556689999999999999999999987778999999999988 4432222 1122211
Q ss_pred CcccCCCCCcceeecCchHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCCCC
Q 007204 524 HEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLR 580 (613)
Q Consensus 524 n~~~~~~g~~~~~~~~~t~d~~~ir~l~~~~i~a~~~Lg~~~~~~~~~w~~~~~~L~ 580 (613)
-+. ..+ -.-+|+..+++..|..+.+.++..|. .+..+.|+..+++|.
T Consensus 407 -~WE-er~------g~~~yt~~~~~agLd~A~~lA~~~gd--~~~a~~~~~~ad~ik 453 (612)
T COG3387 407 -LWE-ERG------GHFTYTKATVYAGLDAAADLAEEFGD--KGSAEHWRKTADELK 453 (612)
T ss_pred -eec-ccC------CcccchHHHHHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHH
Confidence 110 011 14789999999999999999999994 345678888777654
No 13
>PF03636 Glyco_hydro_65N: Glycosyl hydrolase family 65, N-terminal domain ; InterPro: IPR005196 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The family of glycosyl hydrolases (GH65 from CAZY) containing this domain includes vacuolar acid trehalase and maltose phosphorylase. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. This domain is believed to be essential for catalytic activity [] although its precise function remains unknown.; GO: 0003824 catalytic activity, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 1H54_A.
Probab=86.96 E-value=1.4 Score=45.08 Aligned_cols=59 Identities=20% Similarity=0.404 Sum_probs=38.3
Q ss_pred CCCeEEEeeccccEEEEEEEe---C--CEEEEEEEEeecCC-CEEEEEE--Ee-CC-CCceEEEEEecc
Q 007204 121 EETYRRELDLNTATARVKYSV---G--NVEFTREHFSSNPD-QVIVTKI--SG-SE-SGSLSFNVSLDS 179 (613)
Q Consensus 121 ~~~Y~R~LDl~~a~~~v~~~~---~--g~~~~re~F~S~pd-~viv~~i--~a-~~-~~~l~~~~~l~~ 179 (613)
+.+|+|.|||.+|+.+-+|.. + ...++-+-|||..+ +++++++ ++ +. ++.|.+.-.++.
T Consensus 94 i~~~~r~LDm~~G~l~r~~~~~~~~G~~~~i~~~rfvS~~~~~l~~~~~~it~l~~~~g~i~i~~~id~ 162 (255)
T PF03636_consen 94 ISSYRRTLDMRTGILTRSFVWRTPSGRKIKIESERFVSMADPHLAAIRYEITPLNFDDGEITIESGIDG 162 (255)
T ss_dssp EEEEEEEEETTTTEEEEEEEEE-ETTEEEEEEEEEEE-SSSTTEEEEEEEEEE-SSS-EEEEE--EEE-
T ss_pred ccceEEEEEcccEEEEEEEEEEECCCCEEEEEEEEEEcCCCCeEEEEEEEEEECCCCceEEEEEEEeeC
Confidence 458999999999999877554 3 35678889999986 5666554 55 22 246666655544
No 14
>TIGR01561 gde_arch glycogen debranching enzyme, archaeal type, putative. The seed for this model is composed of two uncharacterized archaeal proteins from Methanosarcina acetivorans and Sulfolobus solfataricus. Trusted cutoff is set so that essentially only archaeal members hit the model. The notable exceptions to archaeal membership are the Gram positive Clostridium perfringens which scores much better than some other archaea and the Cyanobacterium Nostoc sp. which scores just above the trusted cutoff. Noise cutoff is set to exclude the characterized eukaryotic glycogen debranching enzyme in S. cerevisiae. These cutoffs leave the prokaryotes Porphyromonas gingivalis and Deinococcus radiodurans below trusted but above noise. Multiple alignments including these last two species exhibit sequence divergence which may suggest a subtly different function for these prokaryotic proteins.
Probab=84.45 E-value=9.1 Score=44.04 Aligned_cols=93 Identities=11% Similarity=0.078 Sum_probs=59.8
Q ss_pred cHHHHHHHHHHHHHhcCCHHHHhhhhHHHHHHHHHHHHHh---cc-ccCCCeEEeCCCCCCCCcccCC-CCCcc-eeec-
Q 007204 466 GGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDW---LI-EGHDGYLETNPSTSPEHEFIAP-DGKLA-CVSY- 538 (613)
Q Consensus 466 g~aWla~~lw~~y~~T~D~~fL~~~~yP~l~~~A~F~~d~---l~-~~~~G~~v~~Ps~SPEn~~~~~-~g~~~-~~~~- 538 (613)
...|....+.+||++|+|..|++ +.+|.|+++.+-|.+- .+ .++||-+..+ .+ -++.+. .|... .--.
T Consensus 349 AtLWfi~al~~Y~~~tgD~~~l~-~l~p~l~~ii~~y~~G~~~~i~~d~dGLi~~g---~~-lTWMDa~~g~~~~tPR~G 423 (575)
T TIGR01561 349 ASLWAIHAIDKTFAYSQDFLFIR-DVVDKVLDIIDNYCAGNDFAIGMDNDLIFHKG---AP-LTWMDAKVDERAVTPRAG 423 (575)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHHHHHhcCCCcEEEECCCccEeCC---CC-CCCCCCCCCCccCCCCCC
Confidence 46799999999999999999997 5899999999877651 11 1234543333 11 123221 11110 0011
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhCC
Q 007204 539 SSTMDMAIIREVFSAIISAAEVLEK 563 (613)
Q Consensus 539 ~~t~d~~~ir~l~~~~i~a~~~Lg~ 563 (613)
-+.--|+++...|+.+.+.++.+|.
T Consensus 424 ~~VEInALwYnAL~~~a~la~~~g~ 448 (575)
T TIGR01561 424 AACEINALWYNALKTAEFLGNELGE 448 (575)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 2455577788888988899999985
No 15
>COG4354 Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism]
Probab=84.44 E-value=2.3 Score=47.82 Aligned_cols=190 Identities=15% Similarity=0.169 Sum_probs=98.1
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCCccccCCCCCCCCCCCceeccc--ccchhccc--ccCCchHhHHHHHHHHHHhhHHHH
Q 007204 352 LLFQFGRYLLISSSRPGTQVANLQGIWNEDLSPTWDSAPHVNIN--LEMNYWQS--LPCNLSECQEPLFDFLTYLSINGS 427 (613)
Q Consensus 352 l~f~~gRYLlisssR~g~~P~~LqGiWn~~~~~~W~~~y~~NiN--~qmnyWpa--~~~nl~E~~~pl~~~~~~l~~~gr 427 (613)
++| -..|+|-|+.= .-|.+--|||-.- +|++..+ .-|.+... ...-.||+.+..++..-+.++..-
T Consensus 325 al~-n~lyiLts~tW--ld~~G~FaV~E~~-------~~~~y~~tig~~~~~GsfgllllfPeLek~~~~~f~~~i~~eD 394 (721)
T COG4354 325 ALF-NSLYILTSNTW--LDKDGRFAVYECP-------FYTWYESTIGDVRLYGSFGLLLLFPELEKSVMRAFARAIPKED 394 (721)
T ss_pred HHH-HHHHHHhhccc--ccCCCceEEEecc-------cccchhcccceeEecCCchHHHHhHHHHHHHHHHHHHhccccC
Confidence 455 35678877542 2355666777532 2233223 22322222 233467888877777666554222
Q ss_pred HHHHHhcCC---------CCcccccc---CCcCCccCCCCCC-cccccCcccHHHHHHHHHHHHHhcCCHHHHhhhhHHH
Q 007204 428 KTAQVNYLA---------SGWVIHHK---TDIWAKSSADRGK-VVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPL 494 (613)
Q Consensus 428 ~~A~~~yG~---------~G~~~~~~---td~wg~t~p~~~~-~~~~~w~~g~aWla~~lw~~y~~T~D~~fL~~~~yP~ 494 (613)
..-+ .+|. .+.+-|.- -..|.. |..+. .+...|.--+.-+...++.+|.||+|++||++ .||.
T Consensus 395 ~~~~-v~gy~~~~~~~k~~~~tphDLg~~ehs~e~--~iy~t~~d~~~wkDlgp~fVLlvYrdf~~T~D~eFL~e-~y~~ 470 (721)
T COG4354 395 TEYR-VIGYAFPEAERKKDPATPHDLGPNEHSIEK--PIYGTYQDPNLWKDLGPDFVLLVYRDFKFTNDREFLKE-VYPV 470 (721)
T ss_pred Ccee-eeeeccchhhccCCCCCCcccCccccchhc--ccccccCCchhhhhcCCcEEeeehhhhhhcccHHHHHH-HHHH
Confidence 1111 1222 23333321 122321 22221 11224555566778899999999999999985 8999
Q ss_pred HHHHHHHHHHhccccCCCeEEeCCCCCCCCcccCCCCCcceeecCchHHHHHHHHHHHHHHHHHHHhCC
Q 007204 495 LEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEK 563 (613)
Q Consensus 495 l~~~A~F~~d~l~~~~~G~~v~~Ps~SPEn~~~~~~g~~~~~~~~~t~d~~~ir~l~~~~i~a~~~Lg~ 563 (613)
++++.+....+ ..+.||- ..-+-.|.|.|. +. -+---.++..+|.-..+.++++.+++|+.
T Consensus 471 iv~~iD~~~~~-d~d~Dgi--P~~~g~~d~~fD---a~--~i~G~ssy~~sl~iaal~A~l~is~~l~~ 531 (721)
T COG4354 471 IVEAIDWLKRF-DQDNDGI--PENSGAMDNTFD---AT--RIQGHSSYCGSLFIAALIAALEISKYLLD 531 (721)
T ss_pred HHHHHHHHHhh-cccCCCC--CcccCCcccccc---cc--eeechhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 99998765433 2233551 001112223221 10 01112455566666666777777777764
No 16
>COG3408 GDB1 Glycogen debranching enzyme [Carbohydrate transport and metabolism]
Probab=82.10 E-value=13 Score=43.35 Aligned_cols=149 Identities=15% Similarity=0.159 Sum_probs=82.0
Q ss_pred CchHhHHHHHHHHHHhhHHHHHHHHHhcCCCCccccccCCcCCccCCCCCCcccccCcccHHHHHHHHHHHHHhcCCHHH
Q 007204 407 NLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDF 486 (613)
Q Consensus 407 nl~E~~~pl~~~~~~l~~~gr~~A~~~yG~~G~~~~~~td~wg~t~p~~~~~~~~~w~~g~aWla~~lw~~y~~T~D~~f 486 (613)
+++|+++..+.++-+. -.+|-.-|.... ..| +.+.+. ---...|.+..+-+|+.+|+|.+|
T Consensus 300 g~~elArg~L~~~a~~------------~~~GkIPhe~~~----~~~--~~~~Y~-tvD~t~~~i~~~~~y~~~t~d~~~ 360 (641)
T COG3408 300 GRFELARGTLNTLARY------------SEPGKIPHEILL----SIP--GEPYYN-TVDATPLFIYLLGAYLKYTGDTEF 360 (641)
T ss_pred CCHHHHHHHHHHHHhh------------ccCCCCcchhhh----cCC--Ccceec-cCCCcHHHHHHHHHHHHHhccHHH
Confidence 6888888777776655 234544443200 011 222221 111246889999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHHhcccc--CCCeEEe-CCCCCCCCcccCCCCCcc-eee-cCchHHHHHHHH-HHHHHHHHHHH
Q 007204 487 LEKRAYPLLEGCASFLLDWLIEG--HDGYLET-NPSTSPEHEFIAPDGKLA-CVS-YSSTMDMAIIRE-VFSAIISAAEV 560 (613)
Q Consensus 487 L~~~~yP~l~~~A~F~~d~l~~~--~~G~~v~-~Ps~SPEn~~~~~~g~~~-~~~-~~~t~d~~~ir~-l~~~~i~a~~~ 560 (613)
+++ .+|.+..+.+.+....-.+ .+|..++ +.+ -.++.+...... ... .+...++..++. ++..+...+++
T Consensus 361 i~e-~~~~v~~a~d~~~~~~~~~~~~~~~~l~~~~~---~~tW~Ds~~~~~~~~~~~g~pi~i~al~~~~~~a~~~~a~l 436 (641)
T COG3408 361 IRE-LWPSVGAALDWILKGFDFGFDTYGDGLLEGGS---NQTWMDSGDDIFAVTPRAGKPVAINALQYYALKAALRLANL 436 (641)
T ss_pred HHH-HHHHHHHHHHHHHhcCCccceecCcccccCCC---CCCCeecCCccccccCCCCCceeHHHHHHHHHHHHHHHHHH
Confidence 985 8999988888887665321 1121111 100 011111110000 001 233444444444 88888888888
Q ss_pred hCCCChHHHHHHHHHhCCCC
Q 007204 561 LEKNEDALVEKVLKSLPRLR 580 (613)
Q Consensus 561 Lg~~~~~~~~~w~~~~~~L~ 580 (613)
|+. .+..++|++.+++|.
T Consensus 437 l~~--~~~~~~~~~~a~~l~ 454 (641)
T COG3408 437 LGD--EEDAARLEKIARRLK 454 (641)
T ss_pred hcc--cccHHHHHHHHHHHH
Confidence 882 233566777776664
No 17
>PRK10137 alpha-glucosidase; Provisional
Probab=78.88 E-value=17 Score=43.25 Aligned_cols=44 Identities=30% Similarity=0.475 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHhhhhHHHHHHHHHHHHHhccccCCCeE
Q 007204 467 GAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYL 514 (613)
Q Consensus 467 ~aWla~~lw~~y~~T~D~~fL~~~~yP~l~~~A~F~~d~l~~~~~G~~ 514 (613)
.+| .+|++|+-|+|++||+ ..||-|...-+.|..+--.+.+|..
T Consensus 422 ~a~---av~~vy~~t~d~~fl~-~lyPkL~a~h~Ww~~~RD~dg~Gl~ 465 (786)
T PRK10137 422 AAW---SVMEVYNVTQDKAWLA-EMYPKLVAYHDWWLRNRDHNGNGVP 465 (786)
T ss_pred HHH---HHHHHHHHhCCHHHHH-HHHHHHHHHHHHHHhcCCCCCCcee
Confidence 455 5677888899999998 5899999999999987655556643
No 18
>PLN02567 alpha,alpha-trehalase
Probab=69.71 E-value=17 Score=41.64 Aligned_cols=36 Identities=25% Similarity=0.321 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHhhhhHHHHHHHHHHHHH
Q 007204 468 AWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLD 504 (613)
Q Consensus 468 aWla~~lw~~y~~T~D~~fL~~~~yP~l~~~A~F~~d 504 (613)
.-++..++.+|+.|+|++||+ +.+|.|..=-+||.+
T Consensus 206 Plla~mV~~~~~~t~d~~~l~-~~lp~L~~E~~~W~~ 241 (554)
T PLN02567 206 PLLSAMVLAVYAATKDVELVR-RALPALLKEHAFWTS 241 (554)
T ss_pred HHHHHHHHHHHHhcCcHHHHH-HHHHHHHHHHHHHhc
Confidence 467778889999999999998 589999988899987
No 19
>KOG2119 consensus Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism]
Probab=65.11 E-value=24 Score=40.96 Aligned_cols=98 Identities=17% Similarity=0.205 Sum_probs=63.6
Q ss_pred HHHHHHHHHhcCCHHHHhhhhHHHHHHHHHHHHHhccccCCCeEEeCCCCCCCCcccCCCCCcceeecC-chHHHHHHHH
Q 007204 471 CTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSYS-STMDMAIIRE 549 (613)
Q Consensus 471 a~~lw~~y~~T~D~~fL~~~~yP~l~~~A~F~~d~l~~~~~G~~v~~Ps~SPEn~~~~~~g~~~~~~~~-~t~d~~~ir~ 549 (613)
...+|.-|-.|||..||+ ..||..+.+.+..+.| -+|.||-. ||.-....-+.++.+.| ++|==.+.-.
T Consensus 563 VLqvYRD~~~tgd~~flk-~~wpsv~~ime~l~~f-DKD~DGmI--------EN~GfpDQTYD~W~~tGvSAYCGgLWlA 632 (879)
T KOG2119|consen 563 VLQVYRDYVATGDEKFLK-AVWPSVYAIMEYLEQF-DKDNDGMI--------ENEGFPDQTYDAWSMTGVSAYCGGLWLA 632 (879)
T ss_pred EEEEEeeeEEeccHHHHH-HHHHHHHHHHHHHHhh-cccCCccc--------ccCCCCCccccceEEecchhhhhHHHHH
Confidence 344555566799999998 5899999999877776 34457743 54322222234454444 4566677778
Q ss_pred HHHHHHHHHHHhCCCCh-----HHHHHHHHHhCC
Q 007204 550 VFSAIISAAEVLEKNED-----ALVEKVLKSLPR 578 (613)
Q Consensus 550 l~~~~i~a~~~Lg~~~~-----~~~~~w~~~~~~ 578 (613)
.|+.+++++.++|.++. +..++.+++.++
T Consensus 633 ALqa~~amA~~~g~~~~~~~f~~klekak~~ye~ 666 (879)
T KOG2119|consen 633 ALQAASAMARQIGDPNTQDYFNNKLEKAKDVYEK 666 (879)
T ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHH
Confidence 89999999999996421 224455555554
No 20
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=64.25 E-value=21 Score=37.89 Aligned_cols=153 Identities=20% Similarity=0.306 Sum_probs=81.3
Q ss_pred HHhccCCCChHHHHHHHHHHHHHhhhcCCCCCCCCCCccccCCCCCCC--CCCCceecccccchhcccccCCchHhHHHH
Q 007204 338 VKSFQTDEDPSLVELLFQFGRYLLISSSRPGTQVANLQGIWNEDLSPT--WDSAPHVNINLEMNYWQSLPCNLSECQEPL 415 (613)
Q Consensus 338 l~~~~~~~d~~L~~l~f~~gRYLlisssR~g~~P~~LqGiWn~~~~~~--W~~~y~~NiN~qmnyWpa~~~nl~E~~~pl 415 (613)
+..|+...|+......-+...++|....|+. --|+|.....+. |--...+ |+..-.|.+..++-+
T Consensus 77 ~~~y~~t~d~~y~~~~~~~a~~~l~~~~~~~-----~G~~~~~~~~~~~~wiD~~~M--~~p~l~~~~~~tgd~------ 143 (336)
T PF07470_consen 77 LDLYERTGDEKYKDAAIQAADWLLARRPRTS-----DGGFWHNRPYPNQVWIDGMYM--NLPFLAWAGKLTGDP------ 143 (336)
T ss_dssp HHHHHHH-THHHHHHHHHHHHHHHHTSCBEC-----TGCBECTTTSTTEEETTHHHH--HHHHHHHHHHHHTGH------
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhCCCCC-----CCccccCCCCCCceeeccccc--cHHHHHHHHHHHCCc------
Confidence 3344444577777777777777776555411 113343221111 2111111 344444444444443
Q ss_pred HHHHHHhhHHHHHHHHHhcC-CCCccccccCCcCCccCCCCCCccc--ccCcccHHHHHHHHHHHHHhcCCHHHHhhhhH
Q 007204 416 FDFLTYLSINGSKTAQVNYL-ASGWVIHHKTDIWAKSSADRGKVVW--ALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAY 492 (613)
Q Consensus 416 ~~~~~~l~~~gr~~A~~~yG-~~G~~~~~~td~wg~t~p~~~~~~~--~~w~~g~aWla~~lw~~y~~T~D~~fL~~~~y 492 (613)
+|++......+.+.+.+|. ..|...|..+.. +...| .+|.-|.+|....+-+-|++..+..--+....
T Consensus 144 -~~~~~a~~q~~~~~~~~~d~~tGl~~h~~~~~--------~~~~~s~~~WsRG~gW~~~Gl~~~l~~lp~~~~~~~~~~ 214 (336)
T PF07470_consen 144 -KYLDEAVRQFRLTRKYLYDPETGLYYHGYTYQ--------GYADWSDSFWSRGNGWAIYGLAEVLEYLPEDHPERDELL 214 (336)
T ss_dssp -HHHHHHHHHHHHHHHHHB-TTTSSBESEEETT--------SSSTTST--BHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHhccCCCCCceeeccCCC--------CCcCcccccCcchhhHHHHHHHHHHHHhcchhhhHHHHH
Confidence 4455555566666666774 467776643321 11112 35888999999999999999755333334456
Q ss_pred HHHHHHHHHHHHhccccCCCeE
Q 007204 493 PLLEGCASFLLDWLIEGHDGYL 514 (613)
Q Consensus 493 P~l~~~A~F~~d~l~~~~~G~~ 514 (613)
..+++.+++...+ . +++|.+
T Consensus 215 ~~~~~~~~~l~~~-q-~~~G~w 234 (336)
T PF07470_consen 215 EIAKKLADALARY-Q-DEDGLW 234 (336)
T ss_dssp HHHHHHHHHHHTT-S-TTTSBE
T ss_pred HHHHHHHHHHHhc-C-CCCCCc
Confidence 6667777664443 2 357865
No 21
>KOG0602 consensus Neutral trehalase [Carbohydrate transport and metabolism]
Probab=58.74 E-value=12 Score=42.88 Aligned_cols=40 Identities=33% Similarity=0.383 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhcCCHHHHhhhhHHHHHHHHHHHHHhcccc
Q 007204 469 WLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEG 509 (613)
Q Consensus 469 Wla~~lw~~y~~T~D~~fL~~~~yP~l~~~A~F~~d~l~~~ 509 (613)
-++-+++++|+.|+|++||+ +++|.|..=-+||.+.=.++
T Consensus 240 llt~Mv~~~y~~t~~~~~~~-~~l~tl~kEy~fw~~~~~~~ 279 (600)
T KOG0602|consen 240 LLTGMVYEYYEATNDEQFLK-RALPTLIKEYEFWTNNRTED 279 (600)
T ss_pred hhhhhHHHhhhccCcHHHHH-HHHHHHhhheecccCCCccc
Confidence 56678999999999999998 58999998888998865544
No 22
>PF01204 Trehalase: Trehalase; InterPro: IPR001661 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 37 GH37 from CAZY comprises enzymes with only one known activity; trehalase (3.2.1.28 from EC). Trehalase is the enzyme responsible for the degradation of the disaccharide alpha,alpha-trehalose yielding two glucose subunits []. It is an enzyme found in a wide variety of organisms and whose sequence has been highly conserved throughout evolution.; GO: 0004555 alpha,alpha-trehalase activity, 0005991 trehalose metabolic process; PDB: 2JJB_B 2WYN_B 2JG0_A 2JF4_A 3C67_A 3D3I_B 3C69_A 3C68_A 2Z07_B.
Probab=56.11 E-value=12 Score=42.54 Aligned_cols=35 Identities=37% Similarity=0.522 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhcCCHHHHhhhhHHHHHHHHHHHHH
Q 007204 469 WLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLD 504 (613)
Q Consensus 469 Wla~~lw~~y~~T~D~~fL~~~~yP~l~~~A~F~~d 504 (613)
-++..++++|+.|+|++||+ +.+|.|..=-+||.+
T Consensus 183 lla~mV~~~y~~t~d~~~l~-~~lp~L~ke~~fW~~ 217 (512)
T PF01204_consen 183 LLAQMVREYYEATKDKAFLR-EALPALEKEYEFWMD 217 (512)
T ss_dssp -HHHHHHHHHHHHHTCHHHH-HHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHhcCCHHHHH-HHHHHHHHHHHHHCC
Confidence 66788999999999999998 589999999999994
No 23
>PRK13271 treA trehalase; Provisional
Probab=39.35 E-value=52 Score=37.88 Aligned_cols=36 Identities=8% Similarity=0.068 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHhhhhHHHHHHHHHHHHHh
Q 007204 468 AWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDW 505 (613)
Q Consensus 468 aWla~~lw~~y~~T~D~~fL~~~~yP~l~~~A~F~~d~ 505 (613)
..++.++..|++.|+| +||+ +++|.|+.=-+||++-
T Consensus 213 P~l~~Mv~~~~~~~~~-~~l~-~~lp~l~kEy~~Wm~~ 248 (569)
T PRK13271 213 PFFALMVELLAQHEGD-AALK-QYLPQMQKEYAYWMEG 248 (569)
T ss_pred hhHHHHHHHHHhcCcH-HHHH-HHHHHHHHHHHHHhCC
Confidence 3677788889999988 5997 6899999999999973
No 24
>PF12439 GDE_N: Glycogen debranching enzyme N terminal; InterPro: IPR024742 This domain is found in bacteria and archaea glycogen debranching enzyme, and is typically between 218 and 229 amino acids in length. Glycogen debranching enzyme catalyses the debranching of amylopectin in glycogen. This is done by transferring three glucose subunits of glycogen from one parallel chain to another. This has the effect of enabling the glucose residues to become more accessible for glycolysis [].
Probab=38.65 E-value=1.9e+02 Score=29.07 Aligned_cols=52 Identities=17% Similarity=0.326 Sum_probs=41.6
Q ss_pred eEEEeeccccEEEEEEEeCCEEEEEEEEeecCCCEEEEEEEe-CCCCceEEEEE
Q 007204 124 YRRELDLNTATARVKYSVGNVEFTREHFSSNPDQVIVTKISG-SESGSLSFNVS 176 (613)
Q Consensus 124 Y~R~LDl~~a~~~v~~~~~g~~~~re~F~S~pd~viv~~i~a-~~~~~l~~~~~ 176 (613)
|-.+-+++ ..-.-.|..+++.+++++|.-+-.|.++++.+- +.+..+.++|+
T Consensus 75 ~L~~F~~~-~~P~w~y~~~~~~l~k~i~M~~g~Nt~~i~Y~l~~~~~~~~L~l~ 127 (223)
T PF12439_consen 75 YLESFRLE-PLPVWRYRVGDVVLEKRIFMVHGENTTVIRYRLLNGSEPVTLRLR 127 (223)
T ss_pred eeeEEEcC-CCeEEEEEECCEEEEEEEEEECCCCEEEEEEEEccCCCceEEEEE
Confidence 66788888 888899999999999999999999999988873 33444555544
No 25
>PRK13272 treA trehalase; Provisional
Probab=36.40 E-value=68 Score=36.71 Aligned_cols=36 Identities=11% Similarity=0.149 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHhhhhHHHHHHHHHHHHHh
Q 007204 468 AWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDW 505 (613)
Q Consensus 468 aWla~~lw~~y~~T~D~~fL~~~~yP~l~~~A~F~~d~ 505 (613)
..++.++..||+.|+|..| + +.+|.|+.=-+||++-
T Consensus 214 P~l~~Mv~~~~~~t~d~~~-~-~~lp~l~kEy~~Wm~~ 249 (542)
T PRK13272 214 PFFSYMVELQAGVEGDAAY-Q-RYLPQLQKEYAYWMQG 249 (542)
T ss_pred hhHHHHHHHHHHhcChHHH-H-HHHHHHHHHHHHHcCC
Confidence 4778889999999999987 4 5899999988999973
No 26
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=32.65 E-value=3.1e+02 Score=28.37 Aligned_cols=48 Identities=27% Similarity=0.198 Sum_probs=32.7
Q ss_pred cCcccHHHHHHHHHHHHHhcCCHHHHhhhhHHHHHHHHHHHHHhccccCCCeE
Q 007204 462 LWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYL 514 (613)
Q Consensus 462 ~w~~g~aWla~~lw~~y~~T~D~~fL~~~~yP~l~~~A~F~~d~l~~~~~G~~ 514 (613)
-+-.|.+.++..+...|+.|+|++|+. .+ ++++++..+....+++|.+
T Consensus 136 G~~hG~aGi~~~L~~l~~~t~d~~~l~-~A----~~~~~~~~~~~~~~~~g~~ 183 (321)
T cd04791 136 GLLHGWAGIALFLLRLYKATGDSRYLE-LA----EEALDKELARAVVDDGGLL 183 (321)
T ss_pred ccccCcHHHHHHHHHHHHHHCCHHHHH-HH----HHHHHHHHHhhccCCCCce
Confidence 345678889999999999999999885 34 4555554444333345554
No 27
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=31.34 E-value=1.6e+02 Score=37.48 Aligned_cols=39 Identities=3% Similarity=0.049 Sum_probs=31.1
Q ss_pred cHHHHHHHHHHHHHhcCC-HHHHh---------------------hhhHHHHHHHHHHHHH
Q 007204 466 GGAWLCTHLWEHYNYTMD-RDFLE---------------------KRAYPLLEGCASFLLD 504 (613)
Q Consensus 466 g~aWla~~lw~~y~~T~D-~~fL~---------------------~~~yP~l~~~A~F~~d 504 (613)
..-|..+.+.+|+++++| .+.|+ +..+|+|+++.+-+.+
T Consensus 1092 A~lWfi~AIqdY~~~~~dg~~iL~~~v~R~fp~Ddt~~~~~~~~~~~l~~~iqeIl~~h~~ 1152 (1464)
T TIGR01531 1092 AAWFWLQCIQDYVEIVPNGEKILKDPVRRIYPDDDSIPVDDGRADQYLFEVIYEALQKHFQ 1152 (1464)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhhhccccccccccccccccchhHHHHHHHHHHHHHHHHHc
Confidence 356999999999999999 45543 3458899999988874
No 28
>KOG3778 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.26 E-value=3e+02 Score=30.71 Aligned_cols=29 Identities=21% Similarity=0.493 Sum_probs=22.3
Q ss_pred cCCHHHHHHHHHHHHHhhhccceEEecCCC
Q 007204 287 NLSYSDLYTRHLDDYQKLFHRVSIQLSRSP 316 (613)
Q Consensus 287 ~~~y~~l~~~H~~~~~~l~~r~~l~L~~~~ 316 (613)
.++-.+|+++|++-|.++|.- .+++..+.
T Consensus 287 ~~~~~~l~qeH~d~W~~l~~t-Gf~~~~sk 315 (603)
T KOG3778|consen 287 DMPAAELLQEHQDLWAQLFST-GFEMKKSK 315 (603)
T ss_pred CCcHHHHHHHHHHHHHHHhcC-ceeEeccc
Confidence 357889999999999999973 55555443
No 29
>PRK09744 DNA-binding transcriptional regulator DicC; Provisional
Probab=26.91 E-value=21 Score=29.57 Aligned_cols=42 Identities=17% Similarity=0.172 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHhCCCCCCCCC--CCCCcc
Q 007204 549 EVFSAIISAAEVLEKNEDALVEKVLKSLPRLRPTKIA--EDGSIM 591 (613)
Q Consensus 549 ~l~~~~i~a~~~Lg~~~~~~~~~w~~~~~~L~p~~i~--~~G~l~ 591 (613)
..|....+.|+.||++. +-+.+|.+++..+..|++. ..|.|+
T Consensus 8 ~yFGs~~kvA~aLGIs~-~AVsQWGe~VPe~rA~~ie~~T~G~LK 51 (75)
T PRK09744 8 AFFGSKTKLANAAGVRL-ASVAAWGELVPEGRAMRLQEASGGELQ 51 (75)
T ss_pred HHhCcHHHHHHHHCCCH-HHHHHHhccCcHHHHHHHHHHhCCcee
Confidence 45677888999999975 4589999998888888764 456664
No 30
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=25.48 E-value=4.5e+02 Score=30.94 Aligned_cols=69 Identities=25% Similarity=0.317 Sum_probs=47.4
Q ss_pred CCCccccccCCcCCccCCCCCCcccccCc------ccHHHHHHHHHHHHHhcCCHHHHhhhhHHHHHHHHHHHHHhcccc
Q 007204 436 ASGWVIHHKTDIWAKSSADRGKVVWALWP------MGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEG 509 (613)
Q Consensus 436 ~~G~~~~~~td~wg~t~p~~~~~~~~~w~------~g~aWla~~lw~~y~~T~D~~fL~~~~yP~l~~~A~F~~d~l~~~ 509 (613)
..|+.-|.....++.+.. ..|.. | -.+|+|+..+-+.|..|||..|.+ +.+++.+|....|...
T Consensus 243 ~GGIyDhlgGGF~RYStD----~~Wlv-PHFEKMLyDnA~l~~~y~~ay~~tgd~~y~~-----~a~~i~~~l~rel~sp 312 (667)
T COG1331 243 RGGIYDHLGGGFFRYSTD----REWLV-PHFEKMLYDNALLLRAYAEAYRATGDDLYRR-----AAEGILDYLLRELYSP 312 (667)
T ss_pred ccCCccccCCceeeeecC----Cceec-hhHHHHHHHHHHHHHHHHHHHHHhCCHHHHH-----HHHHHHHHHHHHhcCC
Confidence 456666655554554432 23321 1 148999999999999999999885 4678889999998754
Q ss_pred CCCeE
Q 007204 510 HDGYL 514 (613)
Q Consensus 510 ~~G~~ 514 (613)
+.|.|
T Consensus 313 ~ggFy 317 (667)
T COG1331 313 EGGFY 317 (667)
T ss_pred CCcee
Confidence 34444
No 31
>KOG3403 consensus Translation initiation factor 1A (eIF-1A) [Translation, ribosomal structure and biogenesis]
Probab=25.02 E-value=33 Score=31.06 Aligned_cols=33 Identities=27% Similarity=0.542 Sum_probs=24.3
Q ss_pred ceEEEcCCCCCccc-cccccCCcceeeecCCCCc
Q 007204 13 LKITFNGPAKHFTD-AIPIGNGRLGAMVWGGVPS 45 (613)
Q Consensus 13 ~~l~y~~PA~~W~e-alpiGNGrlGamv~G~~~~ 45 (613)
.-|.|..-.+...+ --||||||+=+|+|-++.+
T Consensus 24 ReLvfkEegqeYaQv~kmLGnGr~e~~CfDGvkR 57 (145)
T KOG3403|consen 24 RELVFKEEGQEYAQVIKMLGNGRLEASCFDGVKR 57 (145)
T ss_pred hheeehhcchhHHHHHhhhcCCcEEEEEecchhh
Confidence 44667666555543 4689999999999988764
No 32
>PF09087 Cyc-maltodext_N: Cyclomaltodextrinase, N-terminal; InterPro: IPR015171 This domain is found at the N terminus of cyclomaltodextrinase. The domain assumes a beta-sandwich structure composed of the eight antiparallel beta-strands. A ten residue linker is also present at the C-terminal end, which connects the N-terminal domain to a distal domain in the protein. This domain participates in oligomerisation of the protein, wherein the N-terminal domain of one subunit contacts the active centre of the other subunit, and is also required for binding of cyclodextrin to substrate []. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=20.53 E-value=2.4e+02 Score=24.21 Aligned_cols=44 Identities=23% Similarity=0.461 Sum_probs=25.2
Q ss_pred ccccEEEEEEEeCCEEEEEEEEeecCCCEEE-EEEEeCCCCceEEEE
Q 007204 130 LNTATARVKYSVGNVEFTREHFSSNPDQVIV-TKISGSESGSLSFNV 175 (613)
Q Consensus 130 l~~a~~~v~~~~~g~~~~re~F~S~pd~viv-~~i~a~~~~~l~~~~ 175 (613)
+.++.++++| .|+++.+..-+..|+=+.| +.|+..++|.+.|++
T Consensus 25 I~~~~v~i~~--~gV~i~~v~~~~npNYLFv~L~i~~akpg~~~i~~ 69 (88)
T PF09087_consen 25 IASAEVSISY--PGVTIKKVVKTDNPNYLFVYLDISDAKPGTFTINF 69 (88)
T ss_dssp GGGSEEEE-B--TTEEEEEEEE-SSTTEEEEEEEE-T--SEEEEEEE
T ss_pred cccCEEEEeC--CCeEEEEEEecCCCCEEEEEEecCCCCCcEEEEEE
Confidence 4445555555 6888888888878876666 555644566555443
No 33
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=20.46 E-value=1.8e+02 Score=30.79 Aligned_cols=102 Identities=21% Similarity=0.226 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHhhhhHHHHHHHHHHHHHhccccCCCeEE--eCCCCCCCCcccCCCCCcceeecCchHHH
Q 007204 467 GAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLE--TNPSTSPEHEFIAPDGKLACVSYSSTMDM 544 (613)
Q Consensus 467 ~aWla~~lw~~y~~T~D~~fL~~~~yP~l~~~A~F~~d~l~~~~~G~~v--~~Ps~SPEn~~~~~~g~~~~~~~~~t~d~ 544 (613)
.+++...+-+ |..|+|++++ .+++++.+|....+.....|-|. ..+..+|.. ..|+.|
T Consensus 83 ~af~l~ala~-~~~tg~~~~~-----~~A~~~~~~l~~~~~d~~~g~~~~~~~~~~~~~r------------~~n~~m-- 142 (346)
T PF07221_consen 83 QAFALLALAE-ARATGDPEAL-----ELAEQTLEFLERRFWDPEGGGYRESFDPDWSPPR------------GQNPHM-- 142 (346)
T ss_dssp HHHHHHHHHH-HHCTT-TTHH-----HHHHHHHHHHHHHTEETTTTEE--EETTTSSCBE------------EHHHHH--
T ss_pred HHHHHHHHHH-HHHhCChhHH-----HHHHHHHHHHHHHhcccccCcceeccCCccccCC------------CCChhH--
Confidence 4677777777 7889998654 56678889988887654455543 222223220 123332
Q ss_pred HHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCCCC-CCCCCCCCCccccc
Q 007204 545 AIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLR-PTKIAEDGSIMEWV 594 (613)
Q Consensus 545 ~~ir~l~~~~i~a~~~Lg~~~~~~~~~w~~~~~~L~-p~~i~~~G~l~EW~ 594 (613)
.++..++.+.++.+ ++...++.+++++.+. -+--.+.|.+.|..
T Consensus 143 ----hl~eA~l~l~~~~~--~~~~~~~a~~l~~~~~~~f~~~~~g~~~E~f 187 (346)
T PF07221_consen 143 ----HLLEAFLALYEATG--DPRYLDRAEELLDLFLDRFADPESGALPEFF 187 (346)
T ss_dssp ----HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTCHHCCTTEETSEE
T ss_pred ----HHHHHHHHHHHhcc--CHHHHHHHHHHHHHHHHHHHHhccCeeeeee
Confidence 45566677778777 3456666766666554 23235678888844
Done!