Query 007205
Match_columns 613
No_of_seqs 240 out of 454
Neff 4.1
Searched_HMMs 46136
Date Thu Mar 28 20:22:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007205.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007205hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06203 CCT: CCT motif; Inte 99.7 2.7E-18 5.9E-23 132.8 3.1 45 558-602 1-45 (45)
2 COG4753 Response regulator con 98.2 9.7E-07 2.1E-11 97.3 4.5 45 1-45 82-126 (475)
3 COG4565 CitB Response regulato 97.6 6.4E-05 1.4E-09 75.9 4.0 45 1-45 80-124 (224)
4 COG2204 AtoC Response regulato 97.1 0.00053 1.1E-08 76.1 5.0 42 1-42 82-123 (464)
5 COG4566 TtrR Response regulato 97.0 0.00043 9.3E-09 69.1 3.3 43 1-43 82-124 (202)
6 COG0745 OmpR Response regulato 96.7 0.0015 3.2E-08 65.9 4.1 44 1-44 78-121 (229)
7 PRK09581 pleD response regulat 96.6 0.0016 3.4E-08 67.9 3.6 41 1-41 234-274 (457)
8 PLN03029 type-a response regul 96.5 0.0031 6.7E-08 62.5 4.8 42 1-42 108-149 (222)
9 PRK10046 dpiA two-component re 96.1 0.0076 1.7E-07 58.8 5.1 42 1-42 84-125 (225)
10 PRK10529 DNA-binding transcrip 95.9 0.01 2.2E-07 56.2 4.8 42 1-42 78-119 (225)
11 COG4567 Response regulator con 95.9 0.0054 1.2E-07 59.8 2.7 36 1-36 87-122 (182)
12 PRK10643 DNA-binding transcrip 95.9 0.011 2.5E-07 55.1 4.8 42 1-42 78-119 (222)
13 TIGR03787 marine_sort_RR prote 95.8 0.012 2.7E-07 55.6 5.0 42 1-42 80-121 (227)
14 PRK10766 DNA-binding transcrip 95.8 0.012 2.6E-07 55.5 4.7 43 1-43 79-121 (221)
15 PRK10336 DNA-binding transcrip 95.8 0.012 2.6E-07 54.9 4.6 42 1-42 78-119 (219)
16 PRK10161 transcriptional regul 95.7 0.013 2.9E-07 55.6 4.8 42 1-42 82-123 (229)
17 PRK11173 two-component respons 95.6 0.015 3.3E-07 56.0 4.7 42 1-42 80-121 (237)
18 PRK09836 DNA-binding transcrip 95.6 0.016 3.5E-07 55.0 4.6 41 1-41 78-118 (227)
19 PRK10816 DNA-binding transcrip 95.6 0.016 3.5E-07 54.9 4.5 41 1-41 78-118 (223)
20 PRK10610 chemotaxis regulatory 95.5 0.025 5.5E-07 46.3 4.9 40 3-42 88-127 (129)
21 CHL00148 orf27 Ycf27; Reviewed 95.5 0.02 4.3E-07 54.4 4.9 42 1-42 83-124 (240)
22 TIGR02154 PhoB phosphate regul 95.4 0.018 3.9E-07 53.7 4.3 42 1-42 82-123 (226)
23 PRK10430 DNA-binding transcrip 95.4 0.024 5.2E-07 55.8 5.2 42 1-42 83-124 (239)
24 PRK09468 ompR osmolarity respo 95.3 0.02 4.3E-07 55.0 4.3 42 1-42 83-124 (239)
25 PRK10955 DNA-binding transcrip 95.3 0.022 4.8E-07 53.8 4.6 42 1-42 77-118 (232)
26 PRK10693 response regulator of 95.3 0.021 4.6E-07 59.2 4.8 42 1-42 51-93 (303)
27 TIGR02915 PEP_resp_reg putativ 95.2 0.021 4.5E-07 61.4 4.6 41 1-41 79-119 (445)
28 PF09425 CCT_2: Divergent CCT 95.2 0.011 2.3E-07 42.1 1.5 25 556-581 2-26 (27)
29 PRK10360 DNA-binding transcrip 95.1 0.027 5.9E-07 51.9 4.5 40 1-40 78-117 (196)
30 TIGR01387 cztR_silR_copR heavy 95.1 0.028 6E-07 52.3 4.4 42 1-42 76-117 (218)
31 PRK11517 transcriptional regul 95.0 0.029 6.3E-07 52.7 4.5 41 1-41 77-117 (223)
32 KOG1601 GATA-4/5/6 transcripti 95.0 0.0093 2E-07 57.5 1.0 42 554-595 289-330 (340)
33 PRK11083 DNA-binding response 94.9 0.028 6E-07 52.7 4.0 42 1-42 81-122 (228)
34 PRK10840 transcriptional regul 94.9 0.033 7.2E-07 53.6 4.5 39 1-39 86-124 (216)
35 PRK09958 DNA-binding transcrip 94.8 0.037 8E-07 51.4 4.6 41 1-41 79-119 (204)
36 TIGR02875 spore_0_A sporulatio 94.8 0.035 7.7E-07 55.0 4.6 41 1-41 84-124 (262)
37 PRK09935 transcriptional regul 94.6 0.042 9.2E-07 50.8 4.3 41 1-41 83-123 (210)
38 PRK13856 two-component respons 94.6 0.047 1E-06 52.9 4.8 37 6-42 84-120 (241)
39 PRK10701 DNA-binding transcrip 94.5 0.051 1.1E-06 52.3 4.7 41 2-42 79-119 (240)
40 PRK11697 putative two-componen 94.3 0.059 1.3E-06 52.1 4.7 39 2-42 81-119 (238)
41 PRK15479 transcriptional regul 94.3 0.065 1.4E-06 50.0 4.8 42 1-42 78-119 (221)
42 PRK14084 two-component respons 94.1 0.07 1.5E-06 52.1 4.8 35 8-42 85-119 (246)
43 PRK13435 response regulator; P 93.7 0.078 1.7E-06 47.4 4.0 36 11-46 91-126 (145)
44 PRK10710 DNA-binding transcrip 93.6 0.095 2E-06 49.8 4.7 41 2-42 88-128 (240)
45 PRK09483 response regulator; P 93.3 0.11 2.4E-06 48.7 4.5 40 1-40 81-120 (217)
46 PRK10923 glnG nitrogen regulat 93.3 0.11 2.3E-06 56.5 5.0 42 1-42 81-122 (469)
47 PRK15115 response regulator Gl 93.0 0.087 1.9E-06 56.7 3.8 41 1-41 83-123 (444)
48 PRK11475 DNA-binding transcrip 93.0 0.12 2.5E-06 51.5 4.4 40 1-40 74-114 (207)
49 PRK10365 transcriptional regul 93.0 0.077 1.7E-06 56.7 3.2 42 1-42 83-124 (441)
50 PRK10403 transcriptional regul 92.9 0.12 2.7E-06 47.5 4.2 40 2-41 87-126 (215)
51 PRK11361 acetoacetate metaboli 92.7 0.1 2.2E-06 56.1 3.8 40 1-40 82-121 (457)
52 COG2197 CitB Response regulato 92.7 0.15 3.3E-06 50.6 4.7 40 1-40 80-119 (211)
53 COG0784 CheY FOG: CheY-like re 92.6 0.18 4E-06 43.6 4.5 41 1-41 85-126 (130)
54 TIGR01818 ntrC nitrogen regula 92.4 0.15 3.3E-06 55.0 4.7 41 1-41 76-116 (463)
55 PRK15369 two component system 92.4 0.17 3.7E-06 46.0 4.3 40 1-40 83-122 (211)
56 PRK09581 pleD response regulat 92.4 0.18 3.9E-06 52.7 5.0 41 1-41 82-122 (457)
57 PRK11107 hybrid sensory histid 91.8 0.16 3.5E-06 58.8 4.1 40 1-40 747-786 (919)
58 PRK10651 transcriptional regul 91.4 0.27 5.9E-06 45.4 4.5 40 2-41 87-126 (216)
59 COG3437 Response regulator con 91.3 0.15 3.3E-06 55.3 3.1 41 1-41 95-136 (360)
60 PRK15347 two component system 90.7 0.3 6.4E-06 56.8 5.0 40 1-40 772-811 (921)
61 COG3707 AmiR Response regulato 90.7 0.3 6.5E-06 49.2 4.3 40 2-41 84-123 (194)
62 cd00156 REC Signal receiver do 90.1 0.24 5.2E-06 38.1 2.4 36 3-38 77-112 (113)
63 COG3706 PleD Response regulato 89.7 0.4 8.6E-06 53.5 4.7 40 1-40 212-251 (435)
64 PRK11466 hybrid sensory histid 89.5 0.36 7.9E-06 56.3 4.4 41 1-41 760-800 (914)
65 TIGR02956 TMAO_torS TMAO reduc 88.5 0.49 1.1E-05 55.4 4.5 40 1-40 783-822 (968)
66 PRK09390 fixJ response regulat 87.9 0.44 9.6E-06 43.1 3.0 41 2-42 82-122 (202)
67 TIGR03815 CpaE_hom_Actino heli 87.5 0.62 1.3E-05 48.7 4.1 37 3-39 50-86 (322)
68 PRK09959 hybrid sensory histid 87.4 0.63 1.4E-05 56.2 4.6 40 1-40 1036-1075(1197)
69 PRK12555 chemotaxis-specific m 83.4 1.3 2.7E-05 46.5 4.1 21 6-26 86-106 (337)
70 PRK11091 aerobic respiration c 81.3 1.7 3.8E-05 50.1 4.6 34 8-41 612-645 (779)
71 PRK00742 chemotaxis-specific m 76.2 3.5 7.6E-05 43.5 4.6 22 6-27 89-110 (354)
72 COG3947 Response regulator con 75.6 1.2 2.7E-05 47.9 1.0 42 1-44 78-119 (361)
73 PRK13558 bacterio-opsin activa 73.3 3.5 7.6E-05 46.8 4.0 28 1-28 85-112 (665)
74 PRK10100 DNA-binding transcrip 69.5 5.5 0.00012 40.0 4.0 37 2-40 88-126 (216)
75 PRK12704 phosphodiesterase; Pr 67.3 4.4 9.5E-05 46.2 3.0 37 1-37 255-293 (520)
76 PF01408 GFO_IDH_MocA: Oxidore 59.6 21 0.00045 31.2 5.3 37 5-41 74-112 (120)
77 KOG1601 GATA-4/5/6 transcripti 57.4 1.3 2.9E-05 42.7 -2.8 43 3-45 101-143 (340)
78 COG3279 LytT Response regulato 45.1 16 0.00035 37.4 2.5 35 7-41 85-119 (244)
79 KOG1561 CCAAT-binding factor, 42.1 24 0.00051 38.2 3.3 33 575-607 216-249 (307)
80 smart00521 CBF CCAAT-Binding t 35.7 49 0.0011 28.2 3.5 25 575-599 36-61 (62)
81 PRK11107 hybrid sensory histid 28.7 59 0.0013 38.1 4.0 37 3-39 614-650 (919)
82 PF08047 His_leader: Histidine 27.5 24 0.00053 22.4 0.3 8 439-446 6-13 (16)
83 PRK15411 rcsA colanic acid cap 25.4 62 0.0013 32.1 2.9 38 2-40 84-122 (207)
84 COG2201 CheB Chemotaxis respon 21.5 94 0.002 34.3 3.6 36 7-42 88-125 (350)
No 1
>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction. The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding
Probab=99.71 E-value=2.7e-18 Score=132.77 Aligned_cols=45 Identities=47% Similarity=0.976 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhhccCCCCcccchhhhhhhhhCCCCCccccccCC
Q 007205 558 REAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQTA 602 (613)
Q Consensus 558 R~~~l~RyreKrk~R~f~KkirY~~RK~~A~~RpRvKGrFvk~~~ 602 (613)
|+++|+||++||++|+|+|+|+|++||.+|+.|||||||||+..+
T Consensus 1 R~~~l~Ry~~Kr~~R~f~kkirY~~Rk~~A~~R~RvkGRFvk~~e 45 (45)
T PF06203_consen 1 REEKLQRYREKRKRRNFEKKIRYESRKAVADKRPRVKGRFVKKSE 45 (45)
T ss_pred CHHHHHHHHHHHHhhcccccCCcchHHHHHhhCCccCCcccCCCC
Confidence 789999999999999999999999999999999999999999864
No 2
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=98.21 E-value=9.7e-07 Score=97.33 Aligned_cols=45 Identities=24% Similarity=0.458 Sum_probs=42.5
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHhhcC
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSS 45 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~~~~ 45 (613)
+|||++|+||++||++|+.|||+|||+++||..++.+|..++...
T Consensus 82 LSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~kl~~~ 126 (475)
T COG4753 82 LSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGKLEEQ 126 (475)
T ss_pred EeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999998543
No 3
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=97.56 E-value=6.4e-05 Score=75.89 Aligned_cols=45 Identities=22% Similarity=0.417 Sum_probs=39.9
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHhhcC
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSS 45 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~~~~ 45 (613)
+|+-+++++|++||+.||+|||||||..+-|.+.+....++.+.-
T Consensus 80 iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~r~~l 124 (224)
T COG4565 80 ITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQKRHAL 124 (224)
T ss_pred EeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHHHHHHH
Confidence 477889999999999999999999999999999999877766443
No 4
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.10 E-value=0.00053 Score=76.08 Aligned_cols=42 Identities=24% Similarity=0.352 Sum_probs=39.9
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
||+|.+.+++.+||+.||+|||.|||+.++|..++.+++...
T Consensus 82 ~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~ 123 (464)
T COG2204 82 MTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELR 123 (464)
T ss_pred EeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHh
Confidence 799999999999999999999999999999999999988765
No 5
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=97.05 E-value=0.00043 Score=69.05 Aligned_cols=43 Identities=23% Similarity=0.438 Sum_probs=40.1
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHhh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 43 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~~ 43 (613)
||++.+..++.+||+.||+|||-|||+..+|...++..+++..
T Consensus 82 iTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~~ 124 (202)
T COG4566 82 LTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARDA 124 (202)
T ss_pred EeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999887753
No 6
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=96.71 E-value=0.0015 Score=65.90 Aligned_cols=44 Identities=27% Similarity=0.319 Sum_probs=40.3
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHhhc
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 44 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~~~ 44 (613)
||+.++.+....+|..||.|||+|||.+.||..=++-++||...
T Consensus 78 Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~~ 121 (229)
T COG0745 78 LTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNAG 121 (229)
T ss_pred EECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcCcC
Confidence 57788999999999999999999999999999999999988754
No 7
>PRK09581 pleD response regulator PleD; Reviewed
Probab=96.62 E-value=0.0016 Score=67.92 Aligned_cols=41 Identities=34% Similarity=0.442 Sum_probs=36.6
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHH
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 41 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk 41 (613)
+|++++++++.+||..||+|||+||++.++|...+....++
T Consensus 234 ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~~~ 274 (457)
T PRK09581 234 LVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQIRR 274 (457)
T ss_pred EeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999887765443
No 8
>PLN03029 type-a response regulator protein; Provisional
Probab=96.51 E-value=0.0031 Score=62.54 Aligned_cols=42 Identities=31% Similarity=0.577 Sum_probs=38.1
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
||++...+.+.+|+..||.|||.||++..+|..+|.|+.+..
T Consensus 108 ls~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~~~~ 149 (222)
T PLN03029 108 MSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMMKTK 149 (222)
T ss_pred EeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHHHHH
Confidence 467788899999999999999999999999999999987665
No 9
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=96.13 E-value=0.0076 Score=58.85 Aligned_cols=42 Identities=24% Similarity=0.369 Sum_probs=37.9
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
+|++.+.+++.++++.||.+||+||++.++|...++++++..
T Consensus 84 ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~ 125 (225)
T PRK10046 84 TTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 (225)
T ss_pred EEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHHHHH
Confidence 467888999999999999999999999999999999886654
No 10
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=95.94 E-value=0.01 Score=56.18 Aligned_cols=42 Identities=29% Similarity=0.346 Sum_probs=37.1
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
++++.+.+.+.+|+..||.|||+||+...+|...++.++++.
T Consensus 78 lt~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~~ 119 (225)
T PRK10529 78 LSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (225)
T ss_pred EECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 366788899999999999999999999999999888877764
No 11
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=95.87 E-value=0.0054 Score=59.82 Aligned_cols=36 Identities=19% Similarity=0.409 Sum_probs=32.5
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHH
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQ 36 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwq 36 (613)
+++|.+..++.+||++||||||-||-+.+++...+.
T Consensus 87 LTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~ 122 (182)
T COG4567 87 LTGYASIATAVEAVKLGACDYLAKPADADDILAALL 122 (182)
T ss_pred EecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHh
Confidence 479999999999999999999999999999876543
No 12
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=95.86 E-value=0.011 Score=55.08 Aligned_cols=42 Identities=31% Similarity=0.413 Sum_probs=37.8
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
+|++.+.+.+.+++..||.|||.||++.++|...++.++++.
T Consensus 78 ls~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 119 (222)
T PRK10643 78 LTARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIRRH 119 (222)
T ss_pred EECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhhh
Confidence 467788899999999999999999999999999998887765
No 13
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=95.84 E-value=0.012 Score=55.64 Aligned_cols=42 Identities=29% Similarity=0.267 Sum_probs=38.0
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
+|++.+.+.+..++..||.|||.||+...+|...++.++++.
T Consensus 80 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 121 (227)
T TIGR03787 80 LTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFRRA 121 (227)
T ss_pred EECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 467788899999999999999999999999999999988765
No 14
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=95.81 E-value=0.012 Score=55.52 Aligned_cols=43 Identities=21% Similarity=0.188 Sum_probs=37.8
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHhh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 43 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~~ 43 (613)
++++.+...+.+|+..||.|||.||+...+|...++.++++..
T Consensus 79 l~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~r~~ 121 (221)
T PRK10766 79 VTGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLWRIS 121 (221)
T ss_pred EECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHhhhc
Confidence 3567788889999999999999999999999999999888753
No 15
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=95.79 E-value=0.012 Score=54.93 Aligned_cols=42 Identities=26% Similarity=0.375 Sum_probs=37.6
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
||++.+.+.+.+++..||.|||+||+...+|...++.++++.
T Consensus 78 lt~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~ 119 (219)
T PRK10336 78 LTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 (219)
T ss_pred EECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHhcc
Confidence 467788899999999999999999999999999998887764
No 16
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=95.74 E-value=0.013 Score=55.64 Aligned_cols=42 Identities=26% Similarity=0.345 Sum_probs=37.6
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
+|++.+...+.+|+..||.|||.||++..+|...++.++++.
T Consensus 82 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~ 123 (229)
T PRK10161 82 LTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 (229)
T ss_pred EECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 366778899999999999999999999999999999888763
No 17
>PRK11173 two-component response regulator; Provisional
Probab=95.62 E-value=0.015 Score=55.98 Aligned_cols=42 Identities=24% Similarity=0.268 Sum_probs=37.0
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
++++.+.+...+++..||.|||.||++..+|...++.++++.
T Consensus 80 lt~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r~ 121 (237)
T PRK11173 80 LTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (237)
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 356677788889999999999999999999999988888875
No 18
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=95.58 E-value=0.016 Score=55.01 Aligned_cols=41 Identities=34% Similarity=0.450 Sum_probs=36.6
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHH
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 41 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk 41 (613)
+|++.+.+...+|+..||.|||.||++..+|...++.++++
T Consensus 78 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 118 (227)
T PRK09836 78 LTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 (227)
T ss_pred EEcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 46678889999999999999999999999999998887765
No 19
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=95.55 E-value=0.016 Score=54.87 Aligned_cols=41 Identities=29% Similarity=0.400 Sum_probs=36.4
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHH
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 41 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk 41 (613)
++++.+.+...+++..||.|||.||++..+|...++.++++
T Consensus 78 ls~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~ 118 (223)
T PRK10816 78 LTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (223)
T ss_pred EEcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhc
Confidence 35678888999999999999999999999999888887765
No 20
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=95.49 E-value=0.025 Score=46.30 Aligned_cols=40 Identities=15% Similarity=0.316 Sum_probs=35.6
Q ss_pred CCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 3 SLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 3 s~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
.......+.+++..|+.+|+.||+...+|...++++|+++
T Consensus 88 ~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~~~ 127 (129)
T PRK10610 88 AEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKL 127 (129)
T ss_pred CCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHHHc
Confidence 3455678889999999999999999999999999999886
No 21
>CHL00148 orf27 Ycf27; Reviewed
Probab=95.46 E-value=0.02 Score=54.40 Aligned_cols=42 Identities=31% Similarity=0.457 Sum_probs=37.0
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
+|++.+...+.+++..||.|||+||++..+|...+..++++.
T Consensus 83 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~ 124 (240)
T CHL00148 83 LTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRRT 124 (240)
T ss_pred EECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 467788899999999999999999999999998888877653
No 22
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=95.42 E-value=0.018 Score=53.73 Aligned_cols=42 Identities=26% Similarity=0.340 Sum_probs=37.2
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
+|++.+...+.+|+..||.+||.||+..++|...+..++++.
T Consensus 82 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 123 (226)
T TIGR02154 82 LTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRRI 123 (226)
T ss_pred EecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhccc
Confidence 367788899999999999999999999999999988887664
No 23
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=95.37 E-value=0.024 Score=55.76 Aligned_cols=42 Identities=21% Similarity=0.364 Sum_probs=37.7
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
||++.+.+++.+|+..||.+||.||+..++|...+.+++++.
T Consensus 83 ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~~~~~ 124 (239)
T PRK10430 83 ISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKK 124 (239)
T ss_pred EECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 477889999999999999999999999999999988877654
No 24
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=95.30 E-value=0.02 Score=54.95 Aligned_cols=42 Identities=29% Similarity=0.265 Sum_probs=36.7
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
++++.+.+...+++..||.|||.||++..+|...++.++++.
T Consensus 83 ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r~ 124 (239)
T PRK09468 83 LTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRRQ 124 (239)
T ss_pred EECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhccc
Confidence 356778888999999999999999999999999988887663
No 25
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=95.30 E-value=0.022 Score=53.78 Aligned_cols=42 Identities=29% Similarity=0.291 Sum_probs=36.7
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
+|++.+...+.+|+..||.|||.||++..+|...++.++++.
T Consensus 77 lt~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 118 (232)
T PRK10955 77 LTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 (232)
T ss_pred EECCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHhcc
Confidence 356778888999999999999999999999998888877653
No 26
>PRK10693 response regulator of RpoS; Provisional
Probab=95.29 E-value=0.021 Score=59.22 Aligned_cols=42 Identities=26% Similarity=0.380 Sum_probs=36.7
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCC-CHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPI-RKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv-~~~eLk~lwqhV~rk~ 42 (613)
+|++.+.+.+.+|++.||.|||+||+ +.++|...+..+++..
T Consensus 51 lt~~~~~~~~~~al~~Ga~dyl~KP~~~~~~L~~~i~~~l~~~ 93 (303)
T PRK10693 51 ISATENMADIAKALRLGVQDVLLKPVKDLNRLREMVFACLYPS 93 (303)
T ss_pred EECCCCHHHHHHHHHCCCcEEEECCCCcHHHHHHHHHHHhhhh
Confidence 46788899999999999999999999 5899999888876544
No 27
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=95.21 E-value=0.021 Score=61.41 Aligned_cols=41 Identities=27% Similarity=0.378 Sum_probs=36.8
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHH
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 41 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk 41 (613)
||++.+.+.+.+|++.||.|||+|||+.++|...++++++.
T Consensus 79 lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~ 119 (445)
T TIGR02915 79 ITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFHL 119 (445)
T ss_pred EecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhhh
Confidence 46788899999999999999999999999999988887654
No 28
>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.
Probab=95.20 E-value=0.011 Score=42.09 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHhhhccCCCCcccch
Q 007205 556 ADREAAVTKYRQKKTERCFRKKVRYQ 581 (613)
Q Consensus 556 ~~R~~~l~RyreKrk~R~f~KkirY~ 581 (613)
..|.+.|+||.||||.|.+. +..|.
T Consensus 2 ~aRK~SLqRFLeKRK~R~~~-~~PY~ 26 (27)
T PF09425_consen 2 IARKASLQRFLEKRKDRLAA-KSPYQ 26 (27)
T ss_dssp ----HHHHHHHHHH------------
T ss_pred chHHHHHHHHHHHHHHhhcc-CCCCC
Confidence 57999999999999999987 77775
No 29
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=95.14 E-value=0.027 Score=51.94 Aligned_cols=40 Identities=35% Similarity=0.324 Sum_probs=35.7
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHH
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 40 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~r 40 (613)
+|.++..+.+..|+..||.+||.||+..++|...++.+.+
T Consensus 78 ~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~ 117 (196)
T PRK10360 78 LSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVAT 117 (196)
T ss_pred EECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHc
Confidence 3667888999999999999999999999999999888765
No 30
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=95.07 E-value=0.028 Score=52.34 Aligned_cols=42 Identities=36% Similarity=0.437 Sum_probs=36.5
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
++++.+.+.+.+++..||.|||+||+...+|...+..++++.
T Consensus 76 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 117 (218)
T TIGR01387 76 LTARDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRRS 117 (218)
T ss_pred EEcCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhccc
Confidence 356778899999999999999999999999998888776653
No 31
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=95.02 E-value=0.029 Score=52.66 Aligned_cols=41 Identities=32% Similarity=0.404 Sum_probs=36.0
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHH
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 41 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk 41 (613)
|++..+.+.+.+|+..||.|||.||++..+|...++.++++
T Consensus 77 ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 117 (223)
T PRK11517 77 LTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 (223)
T ss_pred EECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 35677888999999999999999999999999888877764
No 32
>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]
Probab=94.97 E-value=0.0093 Score=57.51 Aligned_cols=42 Identities=45% Similarity=0.756 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHHhhhccCCCCcccchhhhhhhhhCCCCCc
Q 007205 554 KFADREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRG 595 (613)
Q Consensus 554 ~~~~R~~~l~RyreKrk~R~f~KkirY~~RK~~A~~RpRvKG 595 (613)
....|++.+.||+++++.|.|.++++|..|+..|+.|||++|
T Consensus 289 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (340)
T KOG1601|consen 289 SSHQRVAEVRRYRESRDGRYFDKGIRYASRKSNAESRPRLKG 330 (340)
T ss_pred ccchHHHHHhhccCccCCcccccccccccccccchhcccccc
Confidence 457899999999999999999999999999999999999999
No 33
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=94.91 E-value=0.028 Score=52.70 Aligned_cols=42 Identities=21% Similarity=0.282 Sum_probs=36.1
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
+|++.+...+.+|+..||.|||.||++..+|...++.++++.
T Consensus 81 ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 122 (228)
T PRK11083 81 LTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRRV 122 (228)
T ss_pred EEcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHCcc
Confidence 356677888899999999999999999999998888777654
No 34
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=94.89 E-value=0.033 Score=53.62 Aligned_cols=39 Identities=8% Similarity=0.070 Sum_probs=34.6
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHH
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 39 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~ 39 (613)
+|.+.+..++.+|++.||.+||+||+..++|...+..|.
T Consensus 86 ls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~ 124 (216)
T PRK10840 86 LTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQ 124 (216)
T ss_pred EEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHH
Confidence 467788899999999999999999999999998877654
No 35
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=94.83 E-value=0.037 Score=51.38 Aligned_cols=41 Identities=17% Similarity=0.120 Sum_probs=36.1
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHH
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 41 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk 41 (613)
+++..+.+++.+++..||.+||+||+..++|...++.+++.
T Consensus 79 ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 119 (204)
T PRK09958 79 VSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 (204)
T ss_pred EeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcC
Confidence 35677888999999999999999999999999998887654
No 36
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=94.79 E-value=0.035 Score=55.00 Aligned_cols=41 Identities=15% Similarity=0.219 Sum_probs=36.4
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHH
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 41 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk 41 (613)
+|++.......+++..||.+||+||++.++|...+++++++
T Consensus 84 lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 84 LSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred EeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 46778889999999999999999999999999988887654
No 37
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=94.59 E-value=0.042 Score=50.81 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=35.7
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHH
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 41 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk 41 (613)
||++.+..++.+|+..||.+||.||+..++|...++.++++
T Consensus 83 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~ 123 (210)
T PRK09935 83 LSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSG 123 (210)
T ss_pred EECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcC
Confidence 46677888999999999999999999999999988876554
No 38
>PRK13856 two-component response regulator VirG; Provisional
Probab=94.57 E-value=0.047 Score=52.95 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=32.7
Q ss_pred hHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 6 SMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 6 ~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
+.....+++..||.|||+||++..+|...++.++++.
T Consensus 84 ~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~~~ 120 (241)
T PRK13856 84 EEADKVVALELGATDFIAKPFGTREFLARIRVALRVR 120 (241)
T ss_pred cHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHhhc
Confidence 5567789999999999999999999999988888764
No 39
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=94.47 E-value=0.051 Score=52.33 Aligned_cols=41 Identities=27% Similarity=0.227 Sum_probs=34.9
Q ss_pred CCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 2 SSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 2 Ss~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
+++.+.....+++..||.|||.||+...+|...+..++++.
T Consensus 79 ~~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~~ 119 (240)
T PRK10701 79 TSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 (240)
T ss_pred ECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 45566677889999999999999999999988888777764
No 40
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=94.28 E-value=0.059 Score=52.05 Aligned_cols=39 Identities=23% Similarity=0.429 Sum_probs=33.1
Q ss_pred CCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 2 SSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 2 Ss~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
|++. +++.+|+..||.|||+||++.++|...+.++.++.
T Consensus 81 t~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~~~ 119 (238)
T PRK11697 81 TAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQER 119 (238)
T ss_pred eccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHhh
Confidence 4444 57889999999999999999999999999886654
No 41
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=94.28 E-value=0.065 Score=49.99 Aligned_cols=42 Identities=29% Similarity=0.404 Sum_probs=36.8
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
|+.+.+.+.+.+++..||.+||.||+...+|...++.++++.
T Consensus 78 lt~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~ 119 (221)
T PRK15479 78 LTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRS 119 (221)
T ss_pred EECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhhh
Confidence 356778888999999999999999999999999988887764
No 42
>PRK14084 two-component response regulator; Provisional
Probab=94.09 E-value=0.07 Score=52.08 Aligned_cols=35 Identities=17% Similarity=0.359 Sum_probs=31.2
Q ss_pred HHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 8 GLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 8 e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
+++.+|++.||.+||+||+..++|...+++++++.
T Consensus 85 ~~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~~~ 119 (246)
T PRK14084 85 QFAVKAFELNATDYILKPFEQKRIEQAVNKVRATK 119 (246)
T ss_pred HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHhh
Confidence 46789999999999999999999999999887654
No 43
>PRK13435 response regulator; Provisional
Probab=93.68 E-value=0.078 Score=47.44 Aligned_cols=36 Identities=14% Similarity=0.100 Sum_probs=31.5
Q ss_pred HHHHHcCCceeEeCCCCHHHHHHHHHHHHHHhhcCC
Q 007205 11 FKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSS 46 (613)
Q Consensus 11 ~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~~~~s 46 (613)
.+++..||.+||+||++..+|..++++++++..+.+
T Consensus 91 ~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~ 126 (145)
T PRK13435 91 VPHDFAGALGVIAKPYSPRGVARALSYLSARRVGDR 126 (145)
T ss_pred HHHHhcCcceeEeCCCCHHHHHHHHHHHHhcCcccc
Confidence 468889999999999999999999999988776544
No 44
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=93.63 E-value=0.095 Score=49.81 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=35.4
Q ss_pred CCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 2 SSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 2 Ss~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
++..+.....+++..||.|||.||+...+|...++.++++.
T Consensus 88 ~~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~~~ 128 (240)
T PRK10710 88 TAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 (240)
T ss_pred EcCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHhhc
Confidence 45567778889999999999999999999998888877764
No 45
>PRK09483 response regulator; Provisional
Probab=93.30 E-value=0.11 Score=48.73 Aligned_cols=40 Identities=20% Similarity=0.222 Sum_probs=34.8
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHH
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 40 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~r 40 (613)
++.+.+..++.+++..||.+||.||+..++|...++.+++
T Consensus 81 ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~ 120 (217)
T PRK09483 81 LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHS 120 (217)
T ss_pred EeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 3566778889999999999999999999999988877765
No 46
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=93.26 E-value=0.11 Score=56.47 Aligned_cols=42 Identities=21% Similarity=0.360 Sum_probs=37.8
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
|+++.+.+.+.+|+..||.|||.||+..++|..++++++...
T Consensus 81 lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 122 (469)
T PRK10923 81 MTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (469)
T ss_pred EECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHHHH
Confidence 467888999999999999999999999999999998887654
No 47
>PRK15115 response regulator GlrR; Provisional
Probab=93.02 E-value=0.087 Score=56.70 Aligned_cols=41 Identities=17% Similarity=0.347 Sum_probs=37.2
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHH
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 41 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk 41 (613)
||++.+.+.+.+|+..||.|||+||+...+|...++++++.
T Consensus 83 lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 123 (444)
T PRK15115 83 LTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALEQ 123 (444)
T ss_pred EECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHHh
Confidence 46788899999999999999999999999999998888764
No 48
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=93.01 E-value=0.12 Score=51.51 Aligned_cols=40 Identities=13% Similarity=-0.018 Sum_probs=33.5
Q ss_pred CCCCchHHHHHHHH-HcCCceeEeCCCCHHHHHHHHHHHHH
Q 007205 1 MSSLDSMGLVFKCL-SKGAVDFLVKPIRKNELKNLWQHVWR 40 (613)
Q Consensus 1 MSs~d~~e~v~kAL-~~GA~DYLvKPv~~~eLk~lwqhV~r 40 (613)
||++++..++.+++ +.||.+||.||++.++|...++.|++
T Consensus 74 lt~~~~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~ 114 (207)
T PRK11475 74 IADDDIEARLIGSLSPSPLDGVLSKASTLEILQQELFLSLN 114 (207)
T ss_pred EeCCCCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHC
Confidence 46777777777766 79999999999999999988888765
No 49
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=92.97 E-value=0.077 Score=56.74 Aligned_cols=42 Identities=24% Similarity=0.480 Sum_probs=37.7
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
|+++.+.+++.++++.||.|||.||++.++|...+++++++.
T Consensus 83 lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~~~ 124 (441)
T PRK10365 83 MTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 (441)
T ss_pred EECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 467888999999999999999999999999999998887654
No 50
>PRK10403 transcriptional regulator NarP; Provisional
Probab=92.92 E-value=0.12 Score=47.46 Aligned_cols=40 Identities=20% Similarity=0.184 Sum_probs=35.0
Q ss_pred CCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHH
Q 007205 2 SSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 41 (613)
Q Consensus 2 Ss~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk 41 (613)
+.+.+...+.+++..||.+||.||++..+|...++.+++.
T Consensus 87 ~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~ 126 (215)
T PRK10403 87 TVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKG 126 (215)
T ss_pred eCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhCC
Confidence 5567778889999999999999999999999998887653
No 51
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=92.69 E-value=0.1 Score=56.12 Aligned_cols=40 Identities=25% Similarity=0.454 Sum_probs=35.3
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHH
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 40 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~r 40 (613)
++++.+.+.+.+|+..||.|||+||+..++|...+++++.
T Consensus 82 lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~ 121 (457)
T PRK11361 82 MTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQ 121 (457)
T ss_pred EeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhcc
Confidence 4678889999999999999999999999999888776554
No 52
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=92.67 E-value=0.15 Score=50.61 Aligned_cols=40 Identities=25% Similarity=0.338 Sum_probs=36.3
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHH
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 40 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~r 40 (613)
+|.+++..++.+||+.||..||+|....++|-..++.|+.
T Consensus 80 lt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~ 119 (211)
T COG2197 80 LTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAA 119 (211)
T ss_pred EeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 4789999999999999999999999999999988877653
No 53
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=92.56 E-value=0.18 Score=43.60 Aligned_cols=41 Identities=27% Similarity=0.351 Sum_probs=32.5
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHH-HHHHHHHHHHH
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNE-LKNLWQHVWRR 41 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~e-Lk~lwqhV~rk 41 (613)
+|++.......+++..|+.+||.||+...+ |...+++++..
T Consensus 85 ~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 126 (130)
T COG0784 85 LTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLAR 126 (130)
T ss_pred EEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHHHh
Confidence 366777777888999999999999987777 77777765543
No 54
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=92.42 E-value=0.15 Score=55.00 Aligned_cols=41 Identities=20% Similarity=0.374 Sum_probs=36.8
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHH
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 41 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk 41 (613)
||++.+...+.+|++.||.|||.||+..++|...+++++..
T Consensus 76 lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 116 (463)
T TIGR01818 76 MTAHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALAH 116 (463)
T ss_pred EeCCCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHHH
Confidence 46788889999999999999999999999999998887764
No 55
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=92.39 E-value=0.17 Score=45.97 Aligned_cols=40 Identities=18% Similarity=0.216 Sum_probs=34.7
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHH
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 40 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~r 40 (613)
|++..+...+..++..||.+||.||+...+|...++.+++
T Consensus 83 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 122 (211)
T PRK15369 83 LTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAV 122 (211)
T ss_pred EeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 3567788899999999999999999999999988877654
No 56
>PRK09581 pleD response regulator PleD; Reviewed
Probab=92.38 E-value=0.18 Score=52.71 Aligned_cols=41 Identities=32% Similarity=0.340 Sum_probs=35.8
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHH
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 41 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk 41 (613)
+|+..++..+.+++..||.|||.||++.++|...+..+++.
T Consensus 82 ~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~ 122 (457)
T PRK09581 82 VTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTRL 122 (457)
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Confidence 35667888999999999999999999999999888887654
No 57
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=91.76 E-value=0.16 Score=58.79 Aligned_cols=40 Identities=28% Similarity=0.315 Sum_probs=35.4
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHH
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 40 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~r 40 (613)
||++...+.+.+|+..||.|||.||++..+|..++.++++
T Consensus 747 lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 786 (919)
T PRK11107 747 VTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKP 786 (919)
T ss_pred EeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHcc
Confidence 4788899999999999999999999999999888776544
No 58
>PRK10651 transcriptional regulator NarL; Provisional
Probab=91.42 E-value=0.27 Score=45.38 Aligned_cols=40 Identities=23% Similarity=0.254 Sum_probs=34.9
Q ss_pred CCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHH
Q 007205 2 SSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 41 (613)
Q Consensus 2 Ss~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk 41 (613)
+...+.+.+..++..||.+||.||++..+|...++.+++.
T Consensus 87 ~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~~ 126 (216)
T PRK10651 87 SVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAG 126 (216)
T ss_pred eCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 5567788899999999999999999999999888887653
No 59
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=91.29 E-value=0.15 Score=55.28 Aligned_cols=41 Identities=27% Similarity=0.344 Sum_probs=35.7
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHH-HHHHHH
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLW-QHVWRR 41 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lw-qhV~rk 41 (613)
++++.+.+..++|+..||.|||.|||++.+|+.-. .|+..|
T Consensus 95 lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~q~k 136 (360)
T COG3437 95 LTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHLQLK 136 (360)
T ss_pred EeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999887 555444
No 60
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=90.75 E-value=0.3 Score=56.78 Aligned_cols=40 Identities=15% Similarity=0.309 Sum_probs=35.9
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHH
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 40 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~r 40 (613)
||++.+.+...+|+..||.|||.||++.++|...+.++++
T Consensus 772 lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 811 (921)
T PRK15347 772 LTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAAE 811 (921)
T ss_pred EeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 4678888999999999999999999999999999887654
No 61
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=90.73 E-value=0.3 Score=49.16 Aligned_cols=40 Identities=18% Similarity=0.390 Sum_probs=35.1
Q ss_pred CCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHH
Q 007205 2 SSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 41 (613)
Q Consensus 2 Ss~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk 41 (613)
.+|++.+++.+|+..||..||||||+..-|+-++.-...+
T Consensus 84 t~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~sr 123 (194)
T COG3707 84 TAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVAVSR 123 (194)
T ss_pred EccCChHHHHHHHHcCCeEEEecCcchhhhhHHHHHHHHH
Confidence 5799999999999999999999999999988877665444
No 62
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=90.07 E-value=0.24 Score=38.13 Aligned_cols=36 Identities=25% Similarity=0.308 Sum_probs=30.2
Q ss_pred CCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHH
Q 007205 3 SLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHV 38 (613)
Q Consensus 3 s~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV 38 (613)
.........+++..|+.+|+.||+...+|...++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 77 AHGDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred ecccHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 344567888999999999999999999998887654
No 63
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=89.72 E-value=0.4 Score=53.45 Aligned_cols=40 Identities=33% Similarity=0.525 Sum_probs=32.1
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHH
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 40 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~r 40 (613)
||+-++.+.+-+|+..||.|||+|||...+|..=....++
T Consensus 212 ~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~ 251 (435)
T COG3706 212 LSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLR 251 (435)
T ss_pred EecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHH
Confidence 4677889999999999999999999997777654444333
No 64
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=89.55 E-value=0.36 Score=56.29 Aligned_cols=41 Identities=17% Similarity=0.087 Sum_probs=36.3
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHH
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 41 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk 41 (613)
||++...+.+.+|+..|+.+||.||+..++|..++.++++.
T Consensus 760 ~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 800 (914)
T PRK11466 760 FSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQL 800 (914)
T ss_pred EeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhhh
Confidence 46777788899999999999999999999999999887753
No 65
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=88.45 E-value=0.49 Score=55.41 Aligned_cols=40 Identities=23% Similarity=0.250 Sum_probs=35.8
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHH
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 40 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~r 40 (613)
||++...+...+|+..|+.+||.|||+..+|..++.+++.
T Consensus 783 lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 822 (968)
T TIGR02956 783 FSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVILA 822 (968)
T ss_pred EECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 4677888899999999999999999999999999888764
No 66
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=87.95 E-value=0.44 Score=43.11 Aligned_cols=41 Identities=22% Similarity=0.397 Sum_probs=34.6
Q ss_pred CCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 2 SSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 2 Ss~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
+...+.+.+.+++..||.+||.||+...+|...++.+++..
T Consensus 82 ~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~~~ 122 (202)
T PRK09390 82 TGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALAQA 122 (202)
T ss_pred ECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHHhh
Confidence 45567788899999999999999999999988877776653
No 67
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=87.50 E-value=0.62 Score=48.66 Aligned_cols=37 Identities=19% Similarity=0.033 Sum_probs=32.7
Q ss_pred CCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHH
Q 007205 3 SLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 39 (613)
Q Consensus 3 s~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~ 39 (613)
...+.+...+||+.||.|||++|++..||..++..+.
T Consensus 50 ~~~~~~~~~~a~~~Ga~~~l~~P~~~~~l~~~l~~~~ 86 (322)
T TIGR03815 50 GEPGGALWRAAAAVGAEHVAVLPEAEGWLVELLADLD 86 (322)
T ss_pred CCCCHHHHHHHHHhChhheeeCCCCHHHHHHHHHhhc
Confidence 3457889999999999999999999999998887764
No 68
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=87.36 E-value=0.63 Score=56.23 Aligned_cols=40 Identities=23% Similarity=0.181 Sum_probs=35.1
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHH
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 40 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~r 40 (613)
||++.+.+.+.+|++.||.|||.||+..++|...++.+.+
T Consensus 1036 lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 1075 (1197)
T PRK09959 1036 LTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQ 1075 (1197)
T ss_pred EECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhh
Confidence 4678888999999999999999999999999988776543
No 69
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=83.40 E-value=1.3 Score=46.51 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=19.1
Q ss_pred hHHHHHHHHHcCCceeEeCCC
Q 007205 6 SMGLVFKCLSKGAVDFLVKPI 26 (613)
Q Consensus 6 ~~e~v~kAL~~GA~DYLvKPv 26 (613)
..+.+.+|+..||.|||.||+
T Consensus 86 ~~~~~~~al~~Ga~d~l~KP~ 106 (337)
T PRK12555 86 NASRVFEAMGAGALDAVDTPT 106 (337)
T ss_pred CHHHHHHHHhcCceEEEECCC
Confidence 467788999999999999999
No 70
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=81.32 E-value=1.7 Score=50.14 Aligned_cols=34 Identities=24% Similarity=0.364 Sum_probs=29.5
Q ss_pred HHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHH
Q 007205 8 GLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 41 (613)
Q Consensus 8 e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk 41 (613)
....+|+..|+.|||.||++..+|...+++++..
T Consensus 612 ~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 645 (779)
T PRK11091 612 KDKKEYLDAGMDDVLSKPLSVPALTAMIKKFWDT 645 (779)
T ss_pred HhHHHHHHCCCCEEEECCCCHHHHHHHHHHHhcc
Confidence 4567899999999999999999999998887643
No 71
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=76.16 E-value=3.5 Score=43.45 Aligned_cols=22 Identities=36% Similarity=0.674 Sum_probs=19.3
Q ss_pred hHHHHHHHHHcCCceeEeCCCC
Q 007205 6 SMGLVFKCLSKGAVDFLVKPIR 27 (613)
Q Consensus 6 ~~e~v~kAL~~GA~DYLvKPv~ 27 (613)
..+.+.+|+..||.|||.||+.
T Consensus 89 ~~~~~~~al~~Ga~d~l~kP~~ 110 (354)
T PRK00742 89 GAEITLRALELGAVDFVTKPFL 110 (354)
T ss_pred CHHHHHHHHhCCCcEEEeCCcc
Confidence 3567889999999999999994
No 72
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=75.61 E-value=1.2 Score=47.86 Aligned_cols=42 Identities=19% Similarity=0.257 Sum_probs=31.3
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHhhc
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 44 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~~~ 44 (613)
+|+|.+ |+-.+...-+.|||+|||.++.|...+.+..++...
T Consensus 78 Issh~e--ya~dsf~~n~~dYl~KPvt~ekLnraIdr~~k~ve~ 119 (361)
T COG3947 78 ISSHAE--YADDSFGMNLDDYLPKPVTPEKLNRAIDRRLKRVEL 119 (361)
T ss_pred Eecchh--hhhhhcccchHhhccCCCCHHHHHHHHHHHhccccc
Confidence 355554 455556666799999999999999988887766544
No 73
>PRK13558 bacterio-opsin activator; Provisional
Probab=73.31 E-value=3.5 Score=46.79 Aligned_cols=28 Identities=4% Similarity=0.107 Sum_probs=24.9
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCH
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRK 28 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~ 28 (613)
||++.+.+.+.+++..||.|||+||+..
T Consensus 85 lt~~~~~~~~~~al~~Ga~dyl~k~~~~ 112 (665)
T PRK13558 85 VPTAGDEAVARRAVDADAAAYVPAVSDD 112 (665)
T ss_pred EECCCCHHHHHHHHhcCcceEEeccchh
Confidence 4678889999999999999999999754
No 74
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=69.52 E-value=5.5 Score=39.95 Aligned_cols=37 Identities=11% Similarity=0.104 Sum_probs=29.5
Q ss_pred CCCchHHHHHHHHHc--CCceeEeCCCCHHHHHHHHHHHHH
Q 007205 2 SSLDSMGLVFKCLSK--GAVDFLVKPIRKNELKNLWQHVWR 40 (613)
Q Consensus 2 Ss~d~~e~v~kAL~~--GA~DYLvKPv~~~eLk~lwqhV~r 40 (613)
|++++ ++..++.. ||..||.|+...++|...++.|.+
T Consensus 88 t~~~~--~~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~ 126 (216)
T PRK10100 88 NTPED--YPYREIENWPHINGVFYAMEDQERVVNGLQGVLR 126 (216)
T ss_pred ECCch--hHHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHc
Confidence 55555 56677775 999999999999999988877653
No 75
>PRK12704 phosphodiesterase; Provisional
Probab=67.28 E-value=4.4 Score=46.23 Aligned_cols=37 Identities=22% Similarity=0.245 Sum_probs=32.3
Q ss_pred CCCCchHH--HHHHHHHcCCceeEeCCCCHHHHHHHHHH
Q 007205 1 MSSLDSMG--LVFKCLSKGAVDFLVKPIRKNELKNLWQH 37 (613)
Q Consensus 1 MSs~d~~e--~v~kAL~~GA~DYLvKPv~~~eLk~lwqh 37 (613)
||+++... .+..+|..|+.||++||++++||..-.+.
T Consensus 255 ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~ 293 (520)
T PRK12704 255 LSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARK 293 (520)
T ss_pred EecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHH
Confidence 58888887 99999999999999999999998766554
No 76
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=59.58 E-value=21 Score=31.18 Aligned_cols=37 Identities=19% Similarity=0.252 Sum_probs=32.0
Q ss_pred chHHHHHHHHHcCCceeEeCCC--CHHHHHHHHHHHHHH
Q 007205 5 DSMGLVFKCLSKGAVDFLVKPI--RKNELKNLWQHVWRR 41 (613)
Q Consensus 5 d~~e~v~kAL~~GA~DYLvKPv--~~~eLk~lwqhV~rk 41 (613)
.-++++.+||+.|..=|+-||+ +.+|++.|++-+-++
T Consensus 74 ~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~ 112 (120)
T PF01408_consen 74 SHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEK 112 (120)
T ss_dssp GHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHh
Confidence 3578999999999999999999 999999998876543
No 77
>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]
Probab=57.41 E-value=1.3 Score=42.72 Aligned_cols=43 Identities=35% Similarity=0.244 Sum_probs=35.2
Q ss_pred CCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHhhcC
Q 007205 3 SLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSS 45 (613)
Q Consensus 3 s~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~~~~ 45 (613)
..+....++.++..|+.+|++||++..+|+.+|+|+++.....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 143 (340)
T KOG1601|consen 101 SSNSSSSSSSSVSPSASLELTKPDRKNRLKRSRQHVRVKDEDG 143 (340)
T ss_pred ccccchhhhcccCCcccccccccccCCCcccCCcccccccccc
Confidence 3444555788899999999999999999999999998765443
No 78
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=45.06 E-value=16 Score=37.40 Aligned_cols=35 Identities=23% Similarity=0.391 Sum_probs=30.1
Q ss_pred HHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHH
Q 007205 7 MGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 41 (613)
Q Consensus 7 ~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk 41 (613)
-+++..|....|.|||+||+..+.|...+....+.
T Consensus 85 ~~~a~~afev~a~d~i~kp~~~~~l~~~l~~~~~~ 119 (244)
T COG3279 85 DEYAVAAFEVEALDYLLKPISEERLAKTLERLRRY 119 (244)
T ss_pred HHHHHHHHhHHHHhhhcCcchHHHHHHHHHHHHHH
Confidence 35677778889999999999999999999887665
No 79
>KOG1561 consensus CCAAT-binding factor, subunit B (HAP2) [Transcription]
Probab=42.05 E-value=24 Score=38.17 Aligned_cols=33 Identities=30% Similarity=0.360 Sum_probs=28.2
Q ss_pred CCcccchhhhhhhhhCCC-CCccccccCCCCCCC
Q 007205 575 RKKVRYQSRKRLAEQRPR-IRGQFVRQTANENTS 607 (613)
Q Consensus 575 ~KkirY~~RK~~A~~RpR-vKGrFvk~~~~~~~~ 607 (613)
.|+---++|-..|-+||| --|||....+.+.++
T Consensus 216 RkpYLHESRH~HAmkR~RG~GGRFln~k~~~~~s 249 (307)
T KOG1561|consen 216 RKPYLHESRHLHAMKRARGEGGRFLNTKEYHDDS 249 (307)
T ss_pred cCccccchhhHHHhhcccCCCCCCCchhhhhhhc
Confidence 456678999999999999 999999998876654
No 80
>smart00521 CBF CCAAT-Binding transcription Factor.
Probab=35.74 E-value=49 Score=28.16 Aligned_cols=25 Identities=40% Similarity=0.537 Sum_probs=22.2
Q ss_pred CCcccchhhhhhhhhCCC-CCccccc
Q 007205 575 RKKVRYQSRKRLAEQRPR-IRGQFVR 599 (613)
Q Consensus 575 ~KkirY~~RK~~A~~RpR-vKGrFvk 599 (613)
.|..-+++|-..|-.||| --|||++
T Consensus 36 rkpYlhESRH~HAm~R~Rg~gGRFl~ 61 (62)
T smart00521 36 RKPYLHESRHLHAMRRPRGSGGRFLN 61 (62)
T ss_pred cCCcccchhHHHHHccCcCCCCCCCC
Confidence 567889999999999999 7799985
No 81
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=28.69 E-value=59 Score=38.12 Aligned_cols=37 Identities=19% Similarity=0.110 Sum_probs=29.7
Q ss_pred CCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHH
Q 007205 3 SLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 39 (613)
Q Consensus 3 s~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~ 39 (613)
...+.....+++..|+.+||.||+...+|...+....
T Consensus 614 ~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 650 (919)
T PRK11107 614 PCHEQVLAEQLKQDGADACLSKPLSHTRLLPALLEPC 650 (919)
T ss_pred CCcchhhHHHHhhCCCceEECCCCCHHHHHHHHHHhh
Confidence 3455667788999999999999999999987765433
No 82
>PF08047 His_leader: Histidine operon leader peptide; InterPro: IPR012565 This family consists of the leader peptide of the histidine (his) operon. The his operon contains all the genes necessary for histidine biosynthesis. The region corresponding to the untranslated 5'-end of the transcript, named the his leader region, displays the typical features of the T box transcriptional attenuation mechanism which is involved in the regulation of many amino acid biosynthetic operons [].; GO: 0000105 histidine biosynthetic process
Probab=27.45 E-value=24 Score=22.41 Aligned_cols=8 Identities=13% Similarity=0.310 Sum_probs=3.8
Q ss_pred cccccccc
Q 007205 439 LTQHYDNC 446 (613)
Q Consensus 439 ~~~~~~~~ 446 (613)
|.++||||
T Consensus 6 fk~hhhhh 13 (16)
T PF08047_consen 6 FKHHHHHH 13 (16)
T ss_pred eccccccc
Confidence 55544443
No 83
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=25.36 E-value=62 Score=32.05 Aligned_cols=38 Identities=13% Similarity=0.131 Sum_probs=28.0
Q ss_pred CCCchHHHHHHHHHcCCce-eEeCCCCHHHHHHHHHHHHH
Q 007205 2 SSLDSMGLVFKCLSKGAVD-FLVKPIRKNELKNLWQHVWR 40 (613)
Q Consensus 2 Ss~d~~e~v~kAL~~GA~D-YLvKPv~~~eLk~lwqhV~r 40 (613)
|++++..++. ++..|+.. |+.|+...++|..+++.+.+
T Consensus 84 t~~~~~~~~~-~~~~~~~~~~~~K~~~~~~L~~aI~~v~~ 122 (207)
T PRK15411 84 MAIANIHFDE-YLLVRKNLLISSKSIKPESLDDLLGDILK 122 (207)
T ss_pred ECCCchhHHH-HHHHHhhceeeeccCCHHHHHHHHHHHHc
Confidence 5566666554 66666654 89999999999988888643
No 84
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=21.54 E-value=94 Score=34.33 Aligned_cols=36 Identities=25% Similarity=0.369 Sum_probs=26.6
Q ss_pred HHHHHHHHHcCCceeEeCCCCH--HHHHHHHHHHHHHh
Q 007205 7 MGLVFKCLSKGAVDFLVKPIRK--NELKNLWQHVWRRC 42 (613)
Q Consensus 7 ~e~v~kAL~~GA~DYLvKPv~~--~eLk~lwqhV~rk~ 42 (613)
.++..+||.+||.||+-||..- .++..+-+.+..|.
T Consensus 88 ~~~t~~al~~gAvD~i~kp~~~i~~~~~~~~~~l~~kv 125 (350)
T COG2201 88 AEATLEALELGAVDFIAKPSGGISLGLDEVAELLIEKV 125 (350)
T ss_pred HHHHHHHHhcCcceeecCCCcccccchHHHHHHHHHHH
Confidence 6889999999999999999853 44444444444444
Done!