Query 007205
Match_columns 613
No_of_seqs 240 out of 454
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 19:50:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007205.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007205hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zgz_A Torcad operon transcrip 97.4 0.00014 4.9E-09 60.4 5.2 42 1-42 79-120 (122)
2 3kht_A Response regulator; PSI 97.4 0.00017 5.9E-09 62.0 5.7 46 1-46 87-133 (144)
3 3gl9_A Response regulator; bet 97.4 0.00011 3.7E-09 62.2 4.3 40 1-40 82-121 (122)
4 2pl1_A Transcriptional regulat 97.4 0.00016 5.5E-09 59.8 5.2 42 1-42 78-119 (121)
5 1p6q_A CHEY2; chemotaxis, sign 97.4 0.00014 4.6E-09 61.1 4.7 42 1-42 87-128 (129)
6 3h1g_A Chemotaxis protein CHEY 97.4 9E-05 3.1E-09 62.9 3.6 40 1-40 87-126 (129)
7 1jbe_A Chemotaxis protein CHEY 97.4 0.00017 5.8E-09 60.5 5.3 42 1-42 85-126 (128)
8 3t6k_A Response regulator rece 97.4 0.00011 3.9E-09 63.2 4.3 42 1-42 84-125 (136)
9 2r25_B Osmosensing histidine p 97.4 0.0001 3.5E-09 63.2 3.9 41 1-41 87-127 (133)
10 3f6p_A Transcriptional regulat 97.3 0.0001 3.4E-09 62.0 3.3 41 1-41 79-119 (120)
11 2qzj_A Two-component response 97.3 0.00024 8.1E-09 61.2 5.4 44 1-44 81-124 (136)
12 3kto_A Response regulator rece 97.3 0.00021 7.2E-09 61.2 4.9 44 1-44 86-129 (136)
13 1xhf_A DYE resistance, aerobic 97.3 0.00025 8.6E-09 59.0 5.0 42 1-42 80-121 (123)
14 1zh2_A KDP operon transcriptio 97.3 0.00025 8.5E-09 58.5 5.0 42 1-42 78-119 (121)
15 3hdg_A Uncharacterized protein 97.3 0.00028 9.7E-09 59.9 5.3 44 1-44 85-128 (137)
16 1dbw_A Transcriptional regulat 97.3 0.0002 6.9E-09 60.2 4.3 42 1-42 81-122 (126)
17 2a9o_A Response regulator; ess 97.3 0.00022 7.7E-09 58.7 4.4 41 1-41 78-118 (120)
18 3crn_A Response regulator rece 97.2 0.0003 1E-08 59.9 5.2 42 1-42 81-122 (132)
19 3lua_A Response regulator rece 97.2 0.00016 5.3E-09 61.9 3.3 44 1-44 87-130 (140)
20 3jte_A Response regulator rece 97.2 0.00032 1.1E-08 60.0 5.3 42 1-42 83-124 (143)
21 1dz3_A Stage 0 sporulation pro 97.2 0.00013 4.4E-09 61.7 2.7 42 1-42 83-124 (130)
22 3b2n_A Uncharacterized protein 97.2 0.00022 7.6E-09 60.8 4.1 42 1-42 83-124 (133)
23 3cfy_A Putative LUXO repressor 97.2 0.00036 1.2E-08 60.1 5.3 42 1-42 82-123 (137)
24 1tmy_A CHEY protein, TMY; chem 97.2 0.00024 8.2E-09 58.9 4.0 39 1-39 81-119 (120)
25 1dcf_A ETR1 protein; beta-alph 97.2 0.00026 8.9E-09 60.3 4.3 41 1-41 89-129 (136)
26 1k68_A Phytochrome response re 97.2 0.0004 1.4E-08 58.3 5.4 44 1-44 91-134 (140)
27 1qo0_D AMIR; binding protein, 97.1 0.0003 1E-08 64.3 4.5 42 1-42 85-126 (196)
28 3hv2_A Response regulator/HD d 97.1 0.00051 1.8E-08 59.9 5.6 43 1-43 92-135 (153)
29 3gt7_A Sensor protein; structu 97.1 0.00041 1.4E-08 60.9 4.9 44 1-44 87-130 (154)
30 1i3c_A Response regulator RCP1 97.1 0.00045 1.5E-08 60.2 5.0 43 1-43 97-139 (149)
31 1k66_A Phytochrome response re 97.1 0.00056 1.9E-08 58.2 5.4 44 1-44 98-141 (149)
32 3heb_A Response regulator rece 97.1 0.00069 2.3E-08 58.9 6.0 43 1-43 95-137 (152)
33 3rqi_A Response regulator prot 97.1 0.00021 7.2E-09 65.1 2.8 42 1-42 85-126 (184)
34 2zay_A Response regulator rece 97.1 0.00051 1.7E-08 59.0 5.0 44 1-44 88-131 (147)
35 3cnb_A DNA-binding response re 97.1 0.0005 1.7E-08 58.3 4.9 44 1-44 90-133 (143)
36 4e7p_A Response regulator; DNA 97.0 0.00045 1.5E-08 60.1 4.2 42 1-42 100-141 (150)
37 2jba_A Phosphate regulon trans 97.0 0.00018 6E-09 60.1 1.5 42 1-42 82-123 (127)
38 3eod_A Protein HNR; response r 97.0 0.00032 1.1E-08 59.1 3.1 42 1-42 85-127 (130)
39 3cg0_A Response regulator rece 97.0 0.00059 2E-08 57.8 4.7 45 1-45 88-132 (140)
40 1srr_A SPO0F, sporulation resp 97.0 0.00035 1.2E-08 58.3 3.1 40 1-40 81-120 (124)
41 3cu5_A Two component transcrip 97.0 0.00025 8.7E-09 61.4 2.2 43 1-43 83-125 (141)
42 1mb3_A Cell division response 97.0 0.00033 1.1E-08 58.2 2.7 40 1-40 81-120 (124)
43 3r0j_A Possible two component 97.0 0.00061 2.1E-08 65.0 4.9 42 1-42 101-142 (250)
44 3hdv_A Response regulator; PSI 97.0 0.00072 2.4E-08 57.3 4.9 42 1-42 87-128 (136)
45 3eul_A Possible nitrate/nitrit 97.0 0.00065 2.2E-08 59.0 4.6 42 1-42 95-136 (152)
46 3grc_A Sensor protein, kinase; 96.9 0.00044 1.5E-08 58.9 3.0 45 1-45 86-131 (140)
47 1s8n_A Putative antiterminator 96.9 0.00039 1.3E-08 63.9 2.8 42 1-42 91-132 (205)
48 3m6m_D Sensory/regulatory prot 96.9 0.0008 2.7E-08 58.5 4.7 41 1-41 96-136 (143)
49 1mvo_A PHOP response regulator 96.9 0.00041 1.4E-08 58.7 2.7 42 1-42 81-122 (136)
50 2qxy_A Response regulator; reg 96.9 0.00071 2.4E-08 57.8 4.2 42 1-42 81-122 (142)
51 2qr3_A Two-component system re 96.9 0.00054 1.8E-08 58.1 3.4 42 1-42 86-127 (140)
52 3h5i_A Response regulator/sens 96.9 0.00015 5.3E-09 62.3 -0.0 44 1-44 84-127 (140)
53 3f6c_A Positive transcription 96.9 0.00033 1.1E-08 59.1 1.9 42 1-42 80-121 (134)
54 1qkk_A DCTD, C4-dicarboxylate 96.9 0.0011 3.9E-08 57.7 5.4 42 1-42 81-122 (155)
55 3n53_A Response regulator rece 96.8 0.00029 1E-08 60.2 1.1 42 1-42 82-123 (140)
56 1a04_A Nitrate/nitrite respons 96.8 0.001 3.6E-08 61.4 4.9 41 1-41 85-125 (215)
57 3kcn_A Adenylate cyclase homol 96.8 0.0012 4.2E-08 57.4 5.1 42 1-42 82-124 (151)
58 3dzd_A Transcriptional regulat 96.8 0.00083 2.8E-08 69.7 4.5 43 1-43 78-120 (368)
59 3cg4_A Response regulator rece 96.7 0.00018 6.2E-09 61.3 -0.7 45 2-46 88-132 (142)
60 1dc7_A NTRC, nitrogen regulati 96.7 0.00025 8.5E-09 58.6 0.0 42 1-42 81-122 (124)
61 3q9s_A DNA-binding response re 96.7 0.00089 3E-08 64.5 3.7 42 1-42 114-155 (249)
62 2qvg_A Two component response 96.7 0.0012 4.3E-08 56.2 4.2 37 1-37 95-131 (143)
63 3cz5_A Two-component response 96.7 0.00088 3E-08 58.3 3.2 42 1-42 85-126 (153)
64 1p2f_A Response regulator; DRR 96.7 0.0015 5.2E-08 60.5 5.0 42 1-42 77-118 (220)
65 2qsj_A DNA-binding response re 96.7 0.001 3.4E-08 57.8 3.5 42 1-42 84-125 (154)
66 3bre_A Probable two-component 96.6 0.0016 5.4E-08 65.0 5.3 40 1-40 99-138 (358)
67 2rjn_A Response regulator rece 96.6 0.0023 7.7E-08 55.7 5.4 42 1-42 85-127 (154)
68 3nhm_A Response regulator; pro 96.6 0.00088 3E-08 56.4 2.6 43 1-44 83-125 (133)
69 3i42_A Response regulator rece 96.6 0.00041 1.4E-08 58.2 0.6 40 2-42 84-123 (127)
70 1kgs_A DRRD, DNA binding respo 96.6 0.0011 3.9E-08 61.2 3.5 42 1-42 80-121 (225)
71 1yio_A Response regulatory pro 96.6 0.00064 2.2E-08 62.3 1.8 42 1-42 82-123 (208)
72 2qv0_A Protein MRKE; structura 96.6 0.0019 6.4E-08 55.2 4.6 38 8-45 94-131 (143)
73 2jk1_A HUPR, hydrogenase trans 96.5 0.0021 7.1E-08 55.0 4.7 42 1-42 78-120 (139)
74 2hqr_A Putative transcriptiona 96.5 0.0012 4.1E-08 61.3 3.0 41 1-41 74-115 (223)
75 3lte_A Response regulator; str 96.5 0.0026 8.8E-08 53.4 4.8 40 2-42 87-126 (132)
76 3eq2_A Probable two-component 96.5 0.0021 7.3E-08 65.7 5.1 42 1-42 83-125 (394)
77 1w25_A Stalked-cell differenti 96.4 0.0025 8.7E-08 66.1 4.9 42 1-42 81-122 (459)
78 1ny5_A Transcriptional regulat 96.3 0.0021 7.2E-08 67.0 4.2 42 1-42 78-119 (387)
79 3eqz_A Response regulator; str 96.3 0.0015 5E-08 54.9 2.4 35 7-41 91-125 (135)
80 2oqr_A Sensory transduction pr 96.3 0.0018 6.1E-08 60.2 2.9 42 1-42 81-122 (230)
81 2gkg_A Response regulator homo 96.2 0.003 1E-07 52.0 3.6 38 4-41 88-125 (127)
82 3klo_A Transcriptional regulat 96.1 0.0011 3.9E-08 62.0 0.5 41 1-41 89-129 (225)
83 1ys7_A Transcriptional regulat 96.0 0.0011 3.9E-08 61.5 0.2 43 1-43 85-127 (233)
84 3c3w_A Two component transcrip 96.0 0.0013 4.4E-08 61.9 0.5 42 1-42 81-122 (225)
85 2gwr_A DNA-binding response re 95.7 0.002 7E-08 60.8 0.3 41 1-41 82-122 (238)
86 3c3m_A Response regulator rece 95.4 0.0051 1.7E-07 52.6 1.7 41 2-42 84-124 (138)
87 3sy8_A ROCR; TIM barrel phosph 95.3 0.0078 2.7E-07 62.3 3.2 42 1-42 83-129 (400)
88 3kyj_B CHEY6 protein, putative 95.3 0.0033 1.1E-07 54.1 0.2 31 4-34 98-128 (145)
89 2rdm_A Response regulator rece 94.1 0.021 7E-07 47.7 2.1 40 1-42 85-124 (132)
90 2lpm_A Two-component response 93.8 0.0072 2.5E-07 54.0 -1.3 29 13-41 94-122 (123)
91 3a10_A Response regulator; pho 93.8 0.021 7.1E-07 46.7 1.6 29 11-39 87-115 (116)
92 3luf_A Two-component system re 93.6 0.061 2.1E-06 52.3 4.9 38 1-39 80-117 (259)
93 3ogl_Q JAZ1 incomplete degron 93.3 0.041 1.4E-06 36.1 2.0 19 555-573 3-21 (21)
94 3t8y_A CHEB, chemotaxis respon 92.8 0.024 8.1E-07 50.4 0.5 39 7-45 112-152 (164)
95 2pln_A HP1043, response regula 92.5 0.062 2.1E-06 45.5 2.7 39 1-41 92-130 (137)
96 2j48_A Two-component sensor ki 92.3 0.024 8.3E-07 45.5 -0.1 28 12-39 89-116 (119)
97 1a2o_A CHEB methylesterase; ba 92.0 0.11 3.8E-06 53.6 4.4 39 2-40 83-132 (349)
98 3c97_A Signal transduction his 91.1 0.13 4.5E-06 43.7 3.2 28 15-42 104-131 (140)
99 3cwo_X Beta/alpha-barrel prote 90.4 0.11 3.9E-06 47.9 2.4 37 3-39 61-99 (237)
100 3ogk_Q JAZ1 incomplete degron 90.1 0.084 2.9E-06 35.1 0.9 19 558-576 1-19 (22)
101 1w25_A Stalked-cell differenti 85.5 0.79 2.7E-05 47.4 5.3 41 2-42 231-271 (459)
102 2b4a_A BH3024; flavodoxin-like 75.8 0.85 2.9E-05 38.4 1.2 24 18-41 108-131 (138)
103 2vyc_A Biodegradative arginine 72.1 1.1 3.7E-05 50.9 1.2 42 2-43 92-135 (755)
104 3q7r_A Transcriptional regulat 71.8 5.2 0.00018 36.0 5.2 36 5-41 83-118 (121)
105 4g92_A HAPB protein; transcrip 50.9 18 0.00062 29.7 4.4 27 575-601 36-63 (64)
106 4gmf_A Yersiniabactin biosynth 35.8 40 0.0014 35.1 5.4 35 7-41 84-118 (372)
107 3hu3_A Transitional endoplasmi 32.4 0.67 2.3E-05 50.2 -8.9 28 8-35 120-147 (489)
108 4g68_A ABC transporter; transp 30.5 11 0.00036 38.9 0.0 11 559-569 81-91 (456)
109 2es4_D Lipase chaperone; prote 28.0 12 0.00043 38.9 0.0 20 551-570 97-116 (332)
110 3rce_A Oligosaccharide transfe 27.8 9.3 0.00032 43.8 -1.1 9 399-407 694-702 (724)
111 3tr9_A Dihydropteroate synthas 24.5 16 0.00054 38.0 0.0 13 437-449 300-312 (314)
112 1jr2_A Uroporphyrinogen-III sy 24.3 16 0.00055 35.9 0.0 6 449-454 10-15 (286)
113 4grv_A Neurotensin receptor ty 23.7 17 0.00057 38.2 0.0 10 442-451 499-508 (510)
114 4faj_A PRGZ; substrate binding 21.8 19 0.00066 37.5 0.0 19 551-569 135-153 (564)
115 3odm_A Pepcase, PEPC, phosphoe 21.5 20 0.00067 40.1 0.0 8 560-567 84-91 (560)
116 3a5i_A Flagellar biosynthesis 21.1 20 0.00069 38.2 0.0 19 577-595 103-121 (389)
117 3etc_A AMP-binding protein; ad 21.0 22 0.00074 38.4 0.2 9 558-566 95-103 (580)
118 1uoz_A Putative cellulase; hyd 20.9 21 0.00073 37.1 0.1 6 449-454 10-15 (315)
119 2px7_A 2-C-methyl-D-erythritol 20.8 21 0.00071 33.9 0.0 8 560-567 126-133 (236)
120 3b9f_I Protein C inhibitor; mi 20.4 21 0.00073 37.3 0.0 9 562-570 161-169 (395)
121 2r9r_B Paddle chimera voltage 20.2 22 0.00075 38.7 0.0 7 561-567 141-147 (514)
No 1
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=97.42 E-value=0.00014 Score=60.39 Aligned_cols=42 Identities=21% Similarity=0.199 Sum_probs=38.4
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
||++.+.+.+.+|+..||.|||.||++.++|...++.++++.
T Consensus 79 ~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 120 (122)
T 1zgz_A 79 VTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 (122)
T ss_dssp EESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EECCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHHHh
Confidence 467788899999999999999999999999999999988875
No 2
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=97.41 E-value=0.00017 Score=61.95 Aligned_cols=46 Identities=11% Similarity=0.128 Sum_probs=41.7
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCC-CHHHHHHHHHHHHHHhhcCC
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPI-RKNELKNLWQHVWRRCHSSS 46 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv-~~~eLk~lwqhV~rk~~~~s 46 (613)
||++.+.+.+.+|+..||.+||.||+ ..++|...++.++++..+..
T Consensus 87 ~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~~~~~~ 133 (144)
T 3kht_A 87 LTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSYWLTVN 133 (144)
T ss_dssp EETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHHHHHTS
T ss_pred EeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHHHHhcc
Confidence 46778899999999999999999999 99999999999998876654
No 3
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=97.40 E-value=0.00011 Score=62.16 Aligned_cols=40 Identities=18% Similarity=0.178 Sum_probs=36.4
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHH
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 40 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~r 40 (613)
||++.+.+.+.+|++.||.|||.||++.++|...++++++
T Consensus 82 ~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 82 LTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp EESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 4778889999999999999999999999999999888764
No 4
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=97.40 E-value=0.00016 Score=59.83 Aligned_cols=42 Identities=29% Similarity=0.376 Sum_probs=38.2
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
||++.+.+.+.+|+..||.|||.||++.++|...++.++++.
T Consensus 78 ~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 119 (121)
T 2pl1_A 78 LTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (121)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHHhh
Confidence 467788899999999999999999999999999999988764
No 5
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=97.40 E-value=0.00014 Score=61.12 Aligned_cols=42 Identities=24% Similarity=0.333 Sum_probs=38.6
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
||++.+.+.+.+|+..||.+||.||++.++|...++.+++++
T Consensus 87 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (129)
T 1p6q_A 87 LTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGAL 128 (129)
T ss_dssp CCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHCC
T ss_pred EeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 578889999999999999999999999999999999988754
No 6
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=97.39 E-value=9e-05 Score=62.94 Aligned_cols=40 Identities=23% Similarity=0.354 Sum_probs=36.3
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHH
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 40 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~r 40 (613)
||++.+.+++.+|++.||.|||.||++.++|...++.+++
T Consensus 87 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~ 126 (129)
T 3h1g_A 87 ITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLG 126 (129)
T ss_dssp EESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHC
T ss_pred EeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhc
Confidence 5788899999999999999999999999999998887764
No 7
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=97.39 E-value=0.00017 Score=60.46 Aligned_cols=42 Identities=14% Similarity=0.326 Sum_probs=38.5
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
||++.+.+++.+|+..||.+||.||++.++|...++.++++.
T Consensus 85 ~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 126 (128)
T 1jbe_A 85 VTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKL 126 (128)
T ss_dssp EESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHHHh
Confidence 467888899999999999999999999999999999988765
No 8
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=97.39 E-value=0.00011 Score=63.19 Aligned_cols=42 Identities=21% Similarity=0.368 Sum_probs=37.9
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
||++.+.+.+.+|+..||.|||.||++.++|...++.++++.
T Consensus 84 ~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~ 125 (136)
T 3t6k_A 84 LTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILART 125 (136)
T ss_dssp EECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC-
T ss_pred EecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhcc
Confidence 477888999999999999999999999999999999888765
No 9
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=97.38 E-value=0.0001 Score=63.21 Aligned_cols=41 Identities=24% Similarity=0.498 Sum_probs=36.9
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHH
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 41 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk 41 (613)
||++.+.+++.+|++.||.+||.||++.++|..+++.++.+
T Consensus 87 lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 127 (133)
T 2r25_B 87 LTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAA 127 (133)
T ss_dssp EESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCTT
T ss_pred EECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Confidence 57888999999999999999999999999999998887544
No 10
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=97.35 E-value=0.0001 Score=62.04 Aligned_cols=41 Identities=29% Similarity=0.273 Sum_probs=36.4
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHH
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 41 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk 41 (613)
||++.+...+.+|+..||.|||.||++.++|...++.++++
T Consensus 79 ~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~~ 119 (120)
T 3f6p_A 79 LTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 119 (120)
T ss_dssp EEESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred EECCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHhc
Confidence 46778889999999999999999999999999988877654
No 11
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=97.31 E-value=0.00024 Score=61.19 Aligned_cols=44 Identities=25% Similarity=0.436 Sum_probs=39.4
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHhhc
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 44 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~~~ 44 (613)
||++.+.+++.+|+..||.|||+||+..++|...++.++++...
T Consensus 81 ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~~~ 124 (136)
T 2qzj_A 81 MTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRRMNS 124 (136)
T ss_dssp EESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHHC
T ss_pred EEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHhhh
Confidence 46778889999999999999999999999999999998887643
No 12
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=97.30 E-value=0.00021 Score=61.19 Aligned_cols=44 Identities=20% Similarity=0.303 Sum_probs=39.7
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHhhc
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 44 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~~~ 44 (613)
||++.+.+.+.+|++.||.|||.||++.++|...++.+++....
T Consensus 86 ~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~~ 129 (136)
T 3kto_A 86 MASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAKE 129 (136)
T ss_dssp EESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHHC-
T ss_pred EEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhccCC
Confidence 47788999999999999999999999999999999999887744
No 13
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=97.28 E-value=0.00025 Score=58.98 Aligned_cols=42 Identities=24% Similarity=0.268 Sum_probs=37.8
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
+|++.+...+.+|+..||.|||.||++.++|...++.++++.
T Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 121 (123)
T 1xhf_A 80 LTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (123)
T ss_dssp EESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EECCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHh
Confidence 467788889999999999999999999999999999888764
No 14
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=97.28 E-value=0.00025 Score=58.47 Aligned_cols=42 Identities=29% Similarity=0.346 Sum_probs=37.9
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
||++.+.+.+.+|++.||.+||.||++.++|...++.++++.
T Consensus 78 ~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 119 (121)
T 1zh2_A 78 LSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (121)
T ss_dssp EESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHHhh
Confidence 467788899999999999999999999999999999988764
No 15
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=97.27 E-value=0.00028 Score=59.94 Aligned_cols=44 Identities=23% Similarity=0.300 Sum_probs=40.4
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHhhc
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 44 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~~~ 44 (613)
||++.+.+.+.+|+..||.+||.||++.++|...++++.+....
T Consensus 85 ~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 128 (137)
T 3hdg_A 85 ISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIKLA 128 (137)
T ss_dssp CCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHHHH
T ss_pred EecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHHHhc
Confidence 57888999999999999999999999999999999999887644
No 16
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=97.26 E-value=0.0002 Score=60.18 Aligned_cols=42 Identities=17% Similarity=0.349 Sum_probs=37.5
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
||++.+.+.+.+|++.||.|||.||++.++|...++.++++.
T Consensus 81 ~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 122 (126)
T 1dbw_A 81 ITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEHL 122 (126)
T ss_dssp EECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTTC
T ss_pred EECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHhh
Confidence 467888899999999999999999999999999998887543
No 17
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=97.26 E-value=0.00022 Score=58.67 Aligned_cols=41 Identities=32% Similarity=0.340 Sum_probs=36.7
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHH
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 41 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk 41 (613)
||++.+.+.+.+|++.||.|||.||++.++|...++.++++
T Consensus 78 ~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 78 LSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 (120)
T ss_dssp EESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred EecCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHcc
Confidence 46777888999999999999999999999999999888764
No 18
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=97.24 E-value=0.0003 Score=59.90 Aligned_cols=42 Identities=17% Similarity=0.262 Sum_probs=37.9
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
||++.+.+.+.+|+..||.|||.||++.++|...++.++++.
T Consensus 81 ~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 122 (132)
T 3crn_A 81 VTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDEQ 122 (132)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHhcc
Confidence 467888899999999999999999999999999999887654
No 19
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=97.23 E-value=0.00016 Score=61.95 Aligned_cols=44 Identities=23% Similarity=0.391 Sum_probs=38.0
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHhhc
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 44 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~~~ 44 (613)
||++.+.+.+.+|+..||.+||.||++.++|...++.++++...
T Consensus 87 ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 130 (140)
T 3lua_A 87 ATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQR 130 (140)
T ss_dssp EESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC---
T ss_pred EeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhccc
Confidence 46788899999999999999999999999999999998876543
No 20
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=97.23 E-value=0.00032 Score=60.02 Aligned_cols=42 Identities=17% Similarity=0.344 Sum_probs=38.4
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
||++.+.+.+.+|+..||.+||.||++.++|...++.++++.
T Consensus 83 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~ 124 (143)
T 3jte_A 83 LTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRK 124 (143)
T ss_dssp EECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHHH
Confidence 467788999999999999999999999999999999988765
No 21
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=97.23 E-value=0.00013 Score=61.68 Aligned_cols=42 Identities=19% Similarity=0.391 Sum_probs=37.7
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
||++.+.+++.+|+..||.|||.||++.++|...++.++++.
T Consensus 83 ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 124 (130)
T 1dz3_A 83 LTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGKT 124 (130)
T ss_dssp EEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHCC
T ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcCC
Confidence 467788899999999999999999999999999999888764
No 22
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=97.22 E-value=0.00022 Score=60.79 Aligned_cols=42 Identities=14% Similarity=0.147 Sum_probs=36.9
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
||++.+.+++.+|++.||.+||.||++.++|...++.+++..
T Consensus 83 ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 124 (133)
T 3b2n_A 83 VTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGE 124 (133)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC--
T ss_pred EecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCC
Confidence 467888999999999999999999999999999999887654
No 23
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.20 E-value=0.00036 Score=60.10 Aligned_cols=42 Identities=33% Similarity=0.461 Sum_probs=37.8
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
+|++.+.+++.+|+..||.|||.||++.++|...++.++++.
T Consensus 82 ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 123 (137)
T 3cfy_A 82 ATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRA 123 (137)
T ss_dssp EESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHHHH
Confidence 467788899999999999999999999999999999887664
No 24
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=97.20 E-value=0.00024 Score=58.86 Aligned_cols=39 Identities=26% Similarity=0.480 Sum_probs=34.9
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHH
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 39 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~ 39 (613)
||++.+.+.+.+|++.||.+||.||++.++|...++.++
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 81 CSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp EECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred EeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 467788899999999999999999999999998887764
No 25
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=97.20 E-value=0.00026 Score=60.25 Aligned_cols=41 Identities=20% Similarity=0.364 Sum_probs=36.3
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHH
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 41 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk 41 (613)
||++.+.+.+.+|++.||.|||.||++.++|...++.+++.
T Consensus 89 ~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 129 (136)
T 1dcf_A 89 LSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEP 129 (136)
T ss_dssp EESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSC
T ss_pred EeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhch
Confidence 46778889999999999999999999999999988877643
No 26
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=97.19 E-value=0.0004 Score=58.32 Aligned_cols=44 Identities=11% Similarity=0.052 Sum_probs=39.6
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHhhc
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 44 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~~~ 44 (613)
||++.+.+.+.+|+..||.+||.||++.++|...+++++++...
T Consensus 91 ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 134 (140)
T 1k68_A 91 LSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEFWLS 134 (140)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHHT
T ss_pred EecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHHHHcc
Confidence 46677889999999999999999999999999999999887654
No 27
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=97.15 E-value=0.0003 Score=64.26 Aligned_cols=42 Identities=7% Similarity=0.158 Sum_probs=37.8
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
||++.+.+++.+|+..||.|||+|||+.++|...+..++++.
T Consensus 85 lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 126 (196)
T 1qo0_D 85 LVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRIS 126 (196)
T ss_dssp EECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHHH
T ss_pred EEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHHHH
Confidence 478899999999999999999999999999999988876543
No 28
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=97.13 E-value=0.00051 Score=59.91 Aligned_cols=43 Identities=21% Similarity=0.353 Sum_probs=39.2
Q ss_pred CCCCchHHHHHHHHHcC-CceeEeCCCCHHHHHHHHHHHHHHhh
Q 007205 1 MSSLDSMGLVFKCLSKG-AVDFLVKPIRKNELKNLWQHVWRRCH 43 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~G-A~DYLvKPv~~~eLk~lwqhV~rk~~ 43 (613)
||++.+.+++.+|+..| |.|||.||++.++|...+++++++..
T Consensus 92 ~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~~~ 135 (153)
T 3hv2_A 92 LTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEHQH 135 (153)
T ss_dssp ECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHHhH
Confidence 57888999999999999 99999999999999999999987653
No 29
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=97.12 E-value=0.00041 Score=60.92 Aligned_cols=44 Identities=23% Similarity=0.302 Sum_probs=39.7
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHhhc
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 44 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~~~ 44 (613)
||++.+.+.+.+|+..||.|||.||++.++|...++.++++...
T Consensus 87 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 130 (154)
T 3gt7_A 87 LTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVKR 130 (154)
T ss_dssp EECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTCC
T ss_pred EECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 46778899999999999999999999999999999999887643
No 30
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=97.11 E-value=0.00045 Score=60.18 Aligned_cols=43 Identities=12% Similarity=0.019 Sum_probs=38.4
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHhh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 43 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~~ 43 (613)
||++.+.+++.+|++.||.|||.||++.++|...++.+.+...
T Consensus 97 ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 139 (149)
T 1i3c_A 97 LTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIESFWL 139 (149)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred EECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHh
Confidence 4677788999999999999999999999999999999877654
No 31
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=97.10 E-value=0.00056 Score=58.20 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=39.6
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHhhc
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 44 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~~~ 44 (613)
||++.+.+.+.+|+..||.+||.||++.++|...+++++++...
T Consensus 98 ~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 141 (149)
T 1k66_A 98 MTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYWLD 141 (149)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHHT
T ss_pred EeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHhhh
Confidence 46778889999999999999999999999999999999887644
No 32
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=97.09 E-value=0.00069 Score=58.88 Aligned_cols=43 Identities=16% Similarity=0.313 Sum_probs=38.6
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHhh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 43 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~~ 43 (613)
||++.+.+.+.+|+..||.+||.||++.++|...++.+.+...
T Consensus 95 ~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 137 (152)
T 3heb_A 95 LTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGLFFS 137 (152)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred EecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 4678888999999999999999999999999999999876653
No 33
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=97.09 E-value=0.00021 Score=65.08 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=38.6
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
||++.+.+++.+|+..||.|||+||++.++|...++.++++.
T Consensus 85 lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~~~ 126 (184)
T 3rqi_A 85 LTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASEV 126 (184)
T ss_dssp EESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHHHH
T ss_pred EeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHHh
Confidence 578899999999999999999999999999999998887665
No 34
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=97.08 E-value=0.00051 Score=59.04 Aligned_cols=44 Identities=20% Similarity=0.257 Sum_probs=39.2
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHhhc
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 44 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~~~ 44 (613)
||++.+.+.+.+|+..||.+||.||++.++|...+++++++...
T Consensus 88 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~~ 131 (147)
T 2zay_A 88 LSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLLYE 131 (147)
T ss_dssp EESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC-
T ss_pred EeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 46778899999999999999999999999999999999887643
No 35
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=97.07 E-value=0.0005 Score=58.27 Aligned_cols=44 Identities=16% Similarity=0.142 Sum_probs=38.7
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHhhc
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 44 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~~~ 44 (613)
||++.+.+.+.+|+..||.+||.||++.++|...+++++++...
T Consensus 90 ~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 133 (143)
T 3cnb_A 90 MTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQKKA 133 (143)
T ss_dssp EESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTTC-
T ss_pred EeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhcc
Confidence 46778889999999999999999999999999999999877543
No 36
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=97.02 E-value=0.00045 Score=60.08 Aligned_cols=42 Identities=12% Similarity=0.227 Sum_probs=37.9
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
||++.+.+++.+|++.||.|||.||++.++|...++.++++.
T Consensus 100 ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 141 (150)
T 4e7p_A 100 VTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGR 141 (150)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTC
T ss_pred EeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCC
Confidence 467888999999999999999999999999999998887654
No 37
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=97.02 E-value=0.00018 Score=60.08 Aligned_cols=42 Identities=26% Similarity=0.298 Sum_probs=37.8
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
||++.+.+.+.+|+..||.|||.||++.++|...++.++++.
T Consensus 82 ~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 123 (127)
T 2jba_A 82 LTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRRI 123 (127)
T ss_dssp EEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHCC
T ss_pred EeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhcc
Confidence 467788899999999999999999999999999999888764
No 38
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=97.02 E-value=0.00032 Score=59.05 Aligned_cols=42 Identities=26% Similarity=0.377 Sum_probs=34.8
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCC-CHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPI-RKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv-~~~eLk~lwqhV~rk~ 42 (613)
||++.+.+.+.+|+..||.+||.||+ ..++|..++++++++.
T Consensus 85 ~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~ 127 (130)
T 3eod_A 85 ISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp EECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred EEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchh
Confidence 46788899999999999999999999 9999999999887653
No 39
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=97.00 E-value=0.00059 Score=57.80 Aligned_cols=45 Identities=11% Similarity=0.192 Sum_probs=40.0
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHhhcC
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSS 45 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~~~~ 45 (613)
||++.+.+.+.+|+..||.+||.||++.++|...+++++++....
T Consensus 88 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~ 132 (140)
T 3cg0_A 88 ITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKKKLE 132 (140)
T ss_dssp EECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHHHHHC
T ss_pred EecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhccccC
Confidence 467788899999999999999999999999999999998876544
No 40
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=96.99 E-value=0.00035 Score=58.32 Aligned_cols=40 Identities=15% Similarity=0.351 Sum_probs=35.4
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHH
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 40 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~r 40 (613)
||++.+.+.+.+|+..||.+||.||++.++|...++.+++
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1srr_A 81 MTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLP 120 (124)
T ss_dssp EESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSC
T ss_pred EEccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhc
Confidence 4678888999999999999999999999999988877653
No 41
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=96.98 E-value=0.00025 Score=61.36 Aligned_cols=43 Identities=16% Similarity=0.254 Sum_probs=32.4
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHhh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 43 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~~ 43 (613)
||++.+.+++.+|+..||.|||.||++.++|...++.++++..
T Consensus 83 ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 125 (141)
T 3cu5_A 83 MSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQTVL 125 (141)
T ss_dssp ECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred EeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 4777888889999999999999999999999999999887653
No 42
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=96.97 E-value=0.00033 Score=58.20 Aligned_cols=40 Identities=13% Similarity=0.190 Sum_probs=30.7
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHH
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 40 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~r 40 (613)
||++.+.+.+.+|++.||.+||.||+..++|...++.+++
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1mb3_A 81 VTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLE 120 (124)
T ss_dssp EC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHS
T ss_pred EECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 4677788889999999999999999999999998887764
No 43
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=96.96 E-value=0.00061 Score=65.00 Aligned_cols=42 Identities=24% Similarity=0.372 Sum_probs=39.4
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
||++++.+++.+|+..||.|||+||++.++|...++.++++.
T Consensus 101 lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~ 142 (250)
T 3r0j_A 101 LTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRA 142 (250)
T ss_dssp EECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhh
Confidence 578889999999999999999999999999999999999876
No 44
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=96.96 E-value=0.00072 Score=57.34 Aligned_cols=42 Identities=24% Similarity=0.333 Sum_probs=36.3
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
||++.+.+.+.+|++.||.+||.||+..++|...++.++...
T Consensus 87 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (136)
T 3hdv_A 87 VSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIG 128 (136)
T ss_dssp EESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred EeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCc
Confidence 467788899999999999999999999999999988876543
No 45
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=96.95 E-value=0.00065 Score=59.02 Aligned_cols=42 Identities=24% Similarity=0.382 Sum_probs=38.2
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
||++.+.+.+.+|++.||.+||.||+..++|...++.++++.
T Consensus 95 ~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 136 (152)
T 3eul_A 95 ISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGR 136 (152)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC
T ss_pred EEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCC
Confidence 467888999999999999999999999999999999887764
No 46
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=96.90 E-value=0.00044 Score=58.95 Aligned_cols=45 Identities=18% Similarity=0.119 Sum_probs=38.2
Q ss_pred CCCCchHHHHH-HHHHcCCceeEeCCCCHHHHHHHHHHHHHHhhcC
Q 007205 1 MSSLDSMGLVF-KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSS 45 (613)
Q Consensus 1 MSs~d~~e~v~-kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~~~~ 45 (613)
||++.+.+.+. +|+..||.+||.||++.++|...+++++++....
T Consensus 86 ~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~~~~ 131 (140)
T 3grc_A 86 VSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNMAEG 131 (140)
T ss_dssp ECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHHC--
T ss_pred EecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhcCCC
Confidence 46677777777 9999999999999999999999999999887554
No 47
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=96.90 E-value=0.00039 Score=63.92 Aligned_cols=42 Identities=24% Similarity=0.366 Sum_probs=38.4
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
||++.+.+++.+|+..||.|||.|||+.++|...+++++++.
T Consensus 91 lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 132 (205)
T 1s8n_A 91 LTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRF 132 (205)
T ss_dssp EEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999987664
No 48
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=96.89 E-value=0.0008 Score=58.50 Aligned_cols=41 Identities=22% Similarity=0.268 Sum_probs=35.0
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHH
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 41 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk 41 (613)
+|++.+.+.+.+|+..||.|||.||+..++|...+..+...
T Consensus 96 ~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 96 LSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC--
T ss_pred EeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHh
Confidence 46778889999999999999999999999999888776543
No 49
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=96.89 E-value=0.00041 Score=58.67 Aligned_cols=42 Identities=24% Similarity=0.296 Sum_probs=36.8
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
||++.+...+.+|+..||.|||.||++.++|...++.++++.
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 122 (136)
T 1mvo_A 81 LTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRS 122 (136)
T ss_dssp EECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHTC
T ss_pred EECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 356667778899999999999999999999999999988764
No 50
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=96.89 E-value=0.00071 Score=57.78 Aligned_cols=42 Identities=24% Similarity=0.430 Sum_probs=37.5
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
||++.+.+.+.+|+..||.+||.||++.++|...+++++++.
T Consensus 81 ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 122 (142)
T 2qxy_A 81 LSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISST 122 (142)
T ss_dssp EESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC-
T ss_pred EECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhc
Confidence 467788899999999999999999999999999999988765
No 51
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=96.88 E-value=0.00054 Score=58.06 Aligned_cols=42 Identities=21% Similarity=0.406 Sum_probs=37.5
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
||++.+.+.+.+|++.||.+||.||++.++|...+++++++.
T Consensus 86 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~ 127 (140)
T 2qr3_A 86 FTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQA 127 (140)
T ss_dssp EEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC
T ss_pred EECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhc
Confidence 456778899999999999999999999999999999887654
No 52
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=96.88 E-value=0.00015 Score=62.32 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=38.7
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHhhc
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 44 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~~~ 44 (613)
||++.+.+.+.+|+..||.+||.||+..++|...++.++++.+.
T Consensus 84 ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 127 (140)
T 3h5i_A 84 LTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRLYEA 127 (140)
T ss_dssp EESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 45677777888999999999999999999999999999887754
No 53
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=96.86 E-value=0.00033 Score=59.13 Aligned_cols=42 Identities=17% Similarity=0.113 Sum_probs=35.0
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
||++.+.+.+.+|+..||.+||.||+..++|...++.++++.
T Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 121 (134)
T 3f6c_A 80 VSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 121 (134)
T ss_dssp EECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTC
T ss_pred EeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 467778888999999999999999999999999999987654
No 54
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=96.86 E-value=0.0011 Score=57.67 Aligned_cols=42 Identities=17% Similarity=0.347 Sum_probs=37.9
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
||++.+.+.+.+|+..||.|||.||++.++|...+++++++.
T Consensus 81 ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~ 122 (155)
T 1qkk_A 81 VTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKR 122 (155)
T ss_dssp EECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHH
Confidence 467788899999999999999999999999999999987654
No 55
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=96.80 E-value=0.00029 Score=60.25 Aligned_cols=42 Identities=26% Similarity=0.351 Sum_probs=34.4
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
||++.+.+.+.+|+..||.+||.||++.++|...++.++++.
T Consensus 82 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 123 (140)
T 3n53_A 82 LFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQ 123 (140)
T ss_dssp EECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhhH
Confidence 356777888899999999999999999999999999998765
No 56
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=96.80 E-value=0.001 Score=61.35 Aligned_cols=41 Identities=20% Similarity=0.249 Sum_probs=37.7
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHH
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 41 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk 41 (613)
||++.+.+++.+|+..||.|||.||++.++|...++.+++.
T Consensus 85 ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 125 (215)
T 1a04_A 85 FSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAG 125 (215)
T ss_dssp EECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHS
T ss_pred EECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcC
Confidence 46788899999999999999999999999999999988875
No 57
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=96.80 E-value=0.0012 Score=57.35 Aligned_cols=42 Identities=14% Similarity=0.324 Sum_probs=38.0
Q ss_pred CCCCchHHHHHHHHHcC-CceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKG-AVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~G-A~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
||++.+.+.+.+|+..| |.+||.||++.++|...++.++++.
T Consensus 82 ~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~~ 124 (151)
T 3kcn_A 82 LTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQY 124 (151)
T ss_dssp EECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHHH
Confidence 46778899999999999 9999999999999999999987764
No 58
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=96.78 E-value=0.00083 Score=69.75 Aligned_cols=43 Identities=23% Similarity=0.398 Sum_probs=39.9
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHhh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 43 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~~ 43 (613)
||++.+.+++.+|++.||.|||.||++.++|...+++++++..
T Consensus 78 lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~ 120 (368)
T 3dzd_A 78 ITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEYS 120 (368)
T ss_dssp EECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHS
T ss_pred EeCCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHhh
Confidence 5889999999999999999999999999999999999988763
No 59
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=96.74 E-value=0.00018 Score=61.35 Aligned_cols=45 Identities=13% Similarity=0.185 Sum_probs=38.3
Q ss_pred CCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHhhcCC
Q 007205 2 SSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSS 46 (613)
Q Consensus 2 Ss~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~~~~s 46 (613)
|++.+.+.+.+|+..||.+||.||++.++|...+++++++.+...
T Consensus 88 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~~ 132 (142)
T 3cg4_A 88 TAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGFVRNQT 132 (142)
T ss_dssp ECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHHHHHC-
T ss_pred ECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHHHhhcc
Confidence 455666777889999999999999999999999999998876554
No 60
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=96.72 E-value=0.00025 Score=58.55 Aligned_cols=42 Identities=21% Similarity=0.360 Sum_probs=37.3
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
||++.+.+.+.+|++.||.|||.||++.++|...+.+++++.
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 122 (124)
T 1dc7_A 81 MTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (124)
T ss_dssp BCCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHHT
T ss_pred EecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHHhh
Confidence 467777888899999999999999999999999999987653
No 61
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=96.69 E-value=0.00089 Score=64.53 Aligned_cols=42 Identities=26% Similarity=0.382 Sum_probs=37.7
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
||++.+.+++.+|+..||.|||.||+..++|...++.++++.
T Consensus 114 lt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~~ 155 (249)
T 3q9s_A 114 LTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQR 155 (249)
T ss_dssp EESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCCC
T ss_pred EECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhhc
Confidence 478889999999999999999999999999999988877643
No 62
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=96.68 E-value=0.0012 Score=56.16 Aligned_cols=37 Identities=16% Similarity=0.118 Sum_probs=32.7
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHH
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQH 37 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqh 37 (613)
||++.+.+.+.+|++.||.|||.||++.++|...+++
T Consensus 95 ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~ 131 (143)
T 2qvg_A 95 LTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWI 131 (143)
T ss_dssp EESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHH
Confidence 3567788999999999999999999999999888655
No 63
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=96.67 E-value=0.00088 Score=58.27 Aligned_cols=42 Identities=14% Similarity=0.228 Sum_probs=37.1
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
||++.+.+.+.+|+..||.|||.||++.++|...+++++++.
T Consensus 85 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~ 126 (153)
T 3cz5_A 85 FTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGR 126 (153)
T ss_dssp EESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTC
T ss_pred EECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCC
Confidence 467778899999999999999999999999999988876543
No 64
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=96.67 E-value=0.0015 Score=60.48 Aligned_cols=42 Identities=24% Similarity=0.299 Sum_probs=38.6
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
||++.+.+++.+|+..||.|||.||++.++|...++.++++.
T Consensus 77 lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 118 (220)
T 1p2f_A 77 LTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLERE 118 (220)
T ss_dssp EESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHC
T ss_pred EEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHccc
Confidence 467888999999999999999999999999999999988764
No 65
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=96.66 E-value=0.001 Score=57.81 Aligned_cols=42 Identities=19% Similarity=0.159 Sum_probs=33.9
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
||++.+.+.+.+|+..||.+||.||++.++|...+++++++.
T Consensus 84 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~ 125 (154)
T 2qsj_A 84 ISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGE 125 (154)
T ss_dssp C-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTC
T ss_pred EeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCC
Confidence 567788899999999999999999999999999999887654
No 66
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=96.65 E-value=0.0016 Score=64.96 Aligned_cols=40 Identities=25% Similarity=0.193 Sum_probs=36.6
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHH
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 40 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~r 40 (613)
||++++++++.+|+..||.|||+||++.++|...++.+++
T Consensus 99 ~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~~~ 138 (358)
T 3bre_A 99 LSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYHSR 138 (358)
T ss_dssp EESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999998887754
No 67
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=96.60 E-value=0.0023 Score=55.69 Aligned_cols=42 Identities=14% Similarity=0.297 Sum_probs=37.6
Q ss_pred CCCCchHHHHHHHHHcC-CceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKG-AVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~G-A~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
||++.+.+.+.+|+..| |.+||.||++.++|...+.+++++.
T Consensus 85 ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~~ 127 (154)
T 2rjn_A 85 ISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQLA 127 (154)
T ss_dssp EECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHHH
Confidence 46778889999999998 9999999999999999999987654
No 68
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=96.60 E-value=0.00088 Score=56.39 Aligned_cols=43 Identities=16% Similarity=0.121 Sum_probs=32.6
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHhhc
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 44 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~~~ 44 (613)
||++.+.+. .+|+..||.+||.||++.++|...++.++++...
T Consensus 83 ~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 125 (133)
T 3nhm_A 83 VSGYAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALLARAEA 125 (133)
T ss_dssp EESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHHHHHC-
T ss_pred EeCCCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHHhhhcc
Confidence 356666666 8999999999999999999999999999887644
No 69
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=96.60 E-value=0.00041 Score=58.16 Aligned_cols=40 Identities=23% Similarity=0.109 Sum_probs=32.0
Q ss_pred CCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 2 SSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 2 Ss~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
|++.+.+. .+++..||.+||.||++.++|...+++.|+.-
T Consensus 84 s~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 123 (127)
T 3i42_A 84 SGFAKNDL-GKEACELFDFYLEKPIDIASLEPILQSIEGHH 123 (127)
T ss_dssp ECC-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC---
T ss_pred ECCcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhhccC
Confidence 55566666 88999999999999999999999999987654
No 70
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=96.59 E-value=0.0011 Score=61.21 Aligned_cols=42 Identities=31% Similarity=0.394 Sum_probs=39.0
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
||++.+.+++.+|+..||.|||.||++.++|...++.++++.
T Consensus 80 ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 121 (225)
T 1kgs_A 80 LTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRK 121 (225)
T ss_dssp EESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhhc
Confidence 478889999999999999999999999999999999998875
No 71
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=96.59 E-value=0.00064 Score=62.31 Aligned_cols=42 Identities=17% Similarity=0.389 Sum_probs=37.9
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
||++.+.+++.+|+..||.|||.||++.++|...++.+++..
T Consensus 82 ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 123 (208)
T 1yio_A 82 ITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLN 123 (208)
T ss_dssp EESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhhh
Confidence 467888889999999999999999999999999999988764
No 72
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=96.58 E-value=0.0019 Score=55.19 Aligned_cols=38 Identities=16% Similarity=0.323 Sum_probs=33.9
Q ss_pred HHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHhhcC
Q 007205 8 GLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSS 45 (613)
Q Consensus 8 e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~~~~ 45 (613)
+.+.+|+..||.|||.||++.++|...+++++++.+..
T Consensus 94 ~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~~ 131 (143)
T 2qv0_A 94 EHAVEAFELEAFDYILKPYQESRIINMLQKLTTAWEQQ 131 (143)
T ss_dssp TTHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHHHHhc
Confidence 36789999999999999999999999999998887554
No 73
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=96.55 E-value=0.0021 Score=54.99 Aligned_cols=42 Identities=17% Similarity=0.281 Sum_probs=36.1
Q ss_pred CCCCchHHHHHHHHHc-CCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSK-GAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~-GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
||++.+.+.+.+|+.. ||.|||.||+..++|...++.+++..
T Consensus 78 ~s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 120 (139)
T 2jk1_A 78 ITGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARMF 120 (139)
T ss_dssp EESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EeCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHHHH
Confidence 4677788889999987 59999999999999999998887654
No 74
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=96.49 E-value=0.0012 Score=61.32 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=37.2
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCC-CHHHHHHHHHHHHHH
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPI-RKNELKNLWQHVWRR 41 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv-~~~eLk~lwqhV~rk 41 (613)
||++.+.+++.+|+..||.|||.||+ +.++|...++.++++
T Consensus 74 lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~ 115 (223)
T 2hqr_A 74 SSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRF 115 (223)
T ss_dssp EESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSS
T ss_pred EECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhcc
Confidence 57888999999999999999999999 999999998887654
No 75
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=96.49 E-value=0.0026 Score=53.43 Aligned_cols=40 Identities=25% Similarity=0.388 Sum_probs=31.9
Q ss_pred CCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 2 SSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 2 Ss~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
+.++.. .+.+|++.||.|||.||++.++|...+++++...
T Consensus 87 ~~~~~~-~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 126 (132)
T 3lte_A 87 SGLDKA-KLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEG 126 (132)
T ss_dssp CCSCSH-HHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC--
T ss_pred eCCChH-HHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCC
Confidence 344444 8889999999999999999999999888776543
No 76
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=96.47 E-value=0.0021 Score=65.71 Aligned_cols=42 Identities=26% Similarity=0.404 Sum_probs=35.0
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCC-CHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPI-RKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv-~~~eLk~lwqhV~rk~ 42 (613)
||++.+.+++.+|++.||.|||+||+ ..++|...+++++++.
T Consensus 83 lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~~~~ 125 (394)
T 3eq2_A 83 LSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRALDRA 125 (394)
T ss_dssp C---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHHHHH
T ss_pred EEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHHhhh
Confidence 68899999999999999999999999 6899998888877654
No 77
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=96.37 E-value=0.0025 Score=66.10 Aligned_cols=42 Identities=33% Similarity=0.369 Sum_probs=38.2
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
||++++.+.+.+|++.||.|||+||++.++|...++.+++..
T Consensus 81 lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~~~ 122 (459)
T 1w25_A 81 ITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFK 122 (459)
T ss_dssp EECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999998887643
No 78
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=96.34 E-value=0.0021 Score=66.96 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=38.4
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
||++.+.+++.+|++.||.|||.|||+.++|...+++++++.
T Consensus 78 lT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~ 119 (387)
T 1ny5_A 78 ITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHR 119 (387)
T ss_dssp EEETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHHHH
Confidence 578889999999999999999999999999999999987653
No 79
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=96.34 E-value=0.0015 Score=54.87 Aligned_cols=35 Identities=14% Similarity=0.175 Sum_probs=30.9
Q ss_pred HHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHH
Q 007205 7 MGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 41 (613)
Q Consensus 7 ~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk 41 (613)
.+.+.+++..||.|||.||++.++|...+++++..
T Consensus 91 ~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~ 125 (135)
T 3eqz_A 91 AETLALSCGLNVINTFTKPINTEVLTCFLTSLSNR 125 (135)
T ss_dssp HHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCC
T ss_pred HHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhh
Confidence 38888999999999999999999999998887544
No 80
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=96.28 E-value=0.0018 Score=60.24 Aligned_cols=42 Identities=31% Similarity=0.277 Sum_probs=37.8
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
||++.+.+.+.+|+..||.|||.||+..++|...++.++++.
T Consensus 81 lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 122 (230)
T 2oqr_A 81 VTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRG 122 (230)
T ss_dssp EECCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTTT
T ss_pred EeCCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 467888899999999999999999999999999999887653
No 81
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=96.20 E-value=0.003 Score=52.00 Aligned_cols=38 Identities=13% Similarity=0.048 Sum_probs=33.1
Q ss_pred CchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHH
Q 007205 4 LDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 41 (613)
Q Consensus 4 ~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk 41 (613)
+.+.+.+.+|+..||.+||.||++.++|...++++++.
T Consensus 88 ~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 125 (127)
T 2gkg_A 88 NPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIGF 125 (127)
T ss_dssp CGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHCC
T ss_pred cCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHcC
Confidence 35667889999999999999999999999998887653
No 82
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=96.09 E-value=0.0011 Score=61.97 Aligned_cols=41 Identities=2% Similarity=-0.070 Sum_probs=36.7
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHH
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 41 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk 41 (613)
||++.+.+++.+|+..||.|||.||+..++|...++.+++.
T Consensus 89 lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 129 (225)
T 3klo_A 89 INCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQD 129 (225)
T ss_dssp EEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTT
T ss_pred EECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCC
Confidence 46777888999999999999999999999999998888765
No 83
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=96.04 E-value=0.0011 Score=61.54 Aligned_cols=43 Identities=33% Similarity=0.334 Sum_probs=38.5
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHhh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 43 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~~ 43 (613)
||++.+.+++.+|+..||.|||.||++.++|...++.++++..
T Consensus 85 lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 127 (233)
T 1ys7_A 85 LSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRG 127 (233)
T ss_dssp EECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhcc
Confidence 4677788888999999999999999999999999999988763
No 84
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=96.02 E-value=0.0013 Score=61.92 Aligned_cols=42 Identities=24% Similarity=0.272 Sum_probs=38.9
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
||++.+.+++.+|+..||.|||.||++.++|...++.+++..
T Consensus 81 lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 122 (225)
T 3c3w_A 81 LTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAGR 122 (225)
T ss_dssp GGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcCC
Confidence 578889999999999999999999999999999999988764
No 85
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=95.66 E-value=0.002 Score=60.76 Aligned_cols=41 Identities=27% Similarity=0.349 Sum_probs=35.2
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHH
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 41 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk 41 (613)
||++.+.+++.+|+..||.|||.||++.++|...++.++++
T Consensus 82 lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 122 (238)
T 2gwr_A 82 LTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRR 122 (238)
T ss_dssp EEETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCC
T ss_pred EeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 35677778899999999999999999999999888776543
No 86
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=95.35 E-value=0.0051 Score=52.61 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=30.4
Q ss_pred CCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 2 SSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 2 Ss~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
|++.+......++..||.|||.||++.++|...++.++++.
T Consensus 84 s~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~~ 124 (138)
T 3c3m_A 84 TAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLARR 124 (138)
T ss_dssp ESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSCC
T ss_pred ECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHHh
Confidence 44444444455556668999999999999999998887543
No 87
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=95.31 E-value=0.0078 Score=62.27 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=37.0
Q ss_pred CCCCchH-----HHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSM-----GLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~-----e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
+|++++. .++.+|+..||.|||.||++.++|..++++++++.
T Consensus 83 ~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~~~ 129 (400)
T 3sy8_A 83 SSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNARR 129 (400)
T ss_dssp SCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHHHT
T ss_pred EcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHHhh
Confidence 4667766 78899999999999999999999999999988765
No 88
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=95.28 E-value=0.0033 Score=54.08 Aligned_cols=31 Identities=13% Similarity=0.022 Sum_probs=23.3
Q ss_pred CchHHHHHHHHHcCCceeEeCCCCHHHHHHH
Q 007205 4 LDSMGLVFKCLSKGAVDFLVKPIRKNELKNL 34 (613)
Q Consensus 4 ~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~l 34 (613)
+.+.+++.+|+..||.|||.||++.++|...
T Consensus 98 ~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~ 128 (145)
T 3kyj_B 98 VSGSPHAARARELGADGVVAKPSGTVSHDLE 128 (145)
T ss_dssp STTSSHHHHHHHTTCSCCCBCCCSCC-----
T ss_pred cCChHHHHHHHhCCCCEEEeCCCCHHHHHHH
Confidence 5667789999999999999999996655443
No 89
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=94.06 E-value=0.021 Score=47.71 Aligned_cols=40 Identities=13% Similarity=0.131 Sum_probs=33.1
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
||++.+.+.+.+|+..| +||.||++.++|...++++++..
T Consensus 85 ~s~~~~~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~~~~~ 124 (132)
T 2rdm_A 85 ISGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQLLNAR 124 (132)
T ss_dssp EESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHHHHTT
T ss_pred EeCCccHHHHHhhcCCc--ceEeCCCCHHHHHHHHHHHHhcC
Confidence 35666777888888877 89999999999999998887654
No 90
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=93.76 E-value=0.0072 Score=54.02 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=24.3
Q ss_pred HHHcCCceeEeCCCCHHHHHHHHHHHHHH
Q 007205 13 CLSKGAVDFLVKPIRKNELKNLWQHVWRR 41 (613)
Q Consensus 13 AL~~GA~DYLvKPv~~~eLk~lwqhV~rk 41 (613)
+.+.||.|||.|||+.++|...++++.|+
T Consensus 94 ~~~~g~~~yl~KP~~~~~L~~~l~~~~~~ 122 (123)
T 2lpm_A 94 DTRYSNIPLLTKPFLDSELEAVLVQISKE 122 (123)
T ss_dssp CSSSCSCSCBCSSSSHHHHHHHHSTTCSC
T ss_pred HHhCCCCcEEECCCCHHHHHHHHHHHHhh
Confidence 34679999999999999999988776554
No 91
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=93.76 E-value=0.021 Score=46.73 Aligned_cols=29 Identities=24% Similarity=0.236 Sum_probs=25.1
Q ss_pred HHHHHcCCceeEeCCCCHHHHHHHHHHHH
Q 007205 11 FKCLSKGAVDFLVKPIRKNELKNLWQHVW 39 (613)
Q Consensus 11 ~kAL~~GA~DYLvKPv~~~eLk~lwqhV~ 39 (613)
.+++..||.+||.||++.++|...+++++
T Consensus 87 ~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 87 SDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 45788999999999999999998877654
No 92
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=93.64 E-value=0.061 Score=52.31 Aligned_cols=38 Identities=21% Similarity=0.179 Sum_probs=28.9
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHH
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVW 39 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~ 39 (613)
||++++.+.+.+|++.||.|||+||+.. .+..+...+.
T Consensus 80 lt~~~~~~~~~~a~~~Ga~dyl~Kp~~~-~~~~~~~~~~ 117 (259)
T 3luf_A 80 LTADISEDKREAWLEAGVLDYVMKDSRH-SLQYAVGLVH 117 (259)
T ss_dssp EECC-CHHHHHHHHHTTCCEEEECSSHH-HHHHHHHHHH
T ss_pred EEccCCHHHHHHHHHCCCcEEEeCCchh-HHHHHHHhhh
Confidence 5789999999999999999999999754 3444444443
No 93
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=93.28 E-value=0.041 Score=36.14 Aligned_cols=19 Identities=21% Similarity=0.455 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHhhhccC.....
Q 007205 555 FADREAAVTKYRQKKTERC..... 573 (613)
Q Consensus 555 ~~~R~~~l~RyreKrk~R~..... 573 (613)
+..|.+.|+||.||||.|.
T Consensus 3 p~aRk~SLqRFleKRk~R~..... 21 (21)
T 3ogl_Q 3 PIARRASLHRFLEKRKDRVxxxxx 26 (26)
T ss_pred chhHHHHHHHHHHHhhccC.....
Confidence 4689999999999999984
No 94
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=92.76 E-value=0.024 Score=50.36 Aligned_cols=39 Identities=23% Similarity=0.429 Sum_probs=30.5
Q ss_pred HHHHHHHHHcCCceeEeCCCCHHHHH--HHHHHHHHHhhcC
Q 007205 7 MGLVFKCLSKGAVDFLVKPIRKNELK--NLWQHVWRRCHSS 45 (613)
Q Consensus 7 ~e~v~kAL~~GA~DYLvKPv~~~eLk--~lwqhV~rk~~~~ 45 (613)
.+.+.+|+..||.|||.||++.++|. .+...+++++...
T Consensus 112 ~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~ 152 (164)
T 3t8y_A 112 AAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQA 152 (164)
T ss_dssp CHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHHH
T ss_pred hHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHH
Confidence 45788999999999999999988874 3356677766543
No 95
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=92.48 E-value=0.062 Score=45.46 Aligned_cols=39 Identities=26% Similarity=0.354 Sum_probs=31.0
Q ss_pred CCCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHH
Q 007205 1 MSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 41 (613)
Q Consensus 1 MSs~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk 41 (613)
||++.+.+.+.+|+..||.+||.||+. ....|...|.+-
T Consensus 92 ls~~~~~~~~~~~~~~g~~~~l~kP~~--~~~~l~~~i~~~ 130 (137)
T 2pln_A 92 SSDNPTSEEEVHAFEQGADDYIAKPYR--SIKALVARIEAR 130 (137)
T ss_dssp EESSCCHHHHHHHHHTTCSEEEESSCS--CHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHcCCceeeeCCCC--CHHHHHHHHHHH
Confidence 467788899999999999999999986 556666655443
No 96
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=92.29 E-value=0.024 Score=45.50 Aligned_cols=28 Identities=25% Similarity=0.242 Sum_probs=24.6
Q ss_pred HHHHcCCceeEeCCCCHHHHHHHHHHHH
Q 007205 12 KCLSKGAVDFLVKPIRKNELKNLWQHVW 39 (613)
Q Consensus 12 kAL~~GA~DYLvKPv~~~eLk~lwqhV~ 39 (613)
+++..||.+||.||++.++|...+++++
T Consensus 89 ~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 89 PLLTAQASAILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp HHHHHHCSEECSSCSTTHHHHHHHHTTC
T ss_pred hhhhcCHHHhccCCCCHHHHHHHHHHHh
Confidence 6889999999999999999988876653
No 97
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=91.98 E-value=0.11 Score=53.58 Aligned_cols=39 Identities=28% Similarity=0.401 Sum_probs=28.9
Q ss_pred CCCchH--HHHHHHHHcCCceeEeCCCCH---------HHHHHHHHHHHH
Q 007205 2 SSLDSM--GLVFKCLSKGAVDFLVKPIRK---------NELKNLWQHVWR 40 (613)
Q Consensus 2 Ss~d~~--e~v~kAL~~GA~DYLvKPv~~---------~eLk~lwqhV~r 40 (613)
|++.+. +.+.+|++.||.|||.||+.. ++|...++++.+
T Consensus 83 S~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~~ 132 (349)
T 1a2o_A 83 SSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAAR 132 (349)
T ss_dssp ECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHHH
T ss_pred ECCCcccHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHHHh
Confidence 555554 569999999999999999983 555555555544
No 98
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=91.06 E-value=0.13 Score=43.66 Aligned_cols=28 Identities=14% Similarity=0.312 Sum_probs=23.4
Q ss_pred HcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 15 SKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 15 ~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
..||.|||.||++.++|...+..+++..
T Consensus 104 ~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 131 (140)
T 3c97_A 104 GAELDEYVSKPLNPNQLRDVVLTCHSEG 131 (140)
T ss_dssp CSSCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred hCChhheEeCCCCHHHHHHHHHHHhCCC
Confidence 5799999999999999999988876543
No 99
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=90.42 E-value=0.11 Score=47.85 Aligned_cols=37 Identities=19% Similarity=0.437 Sum_probs=28.8
Q ss_pred CCchHHHHHHHHHcCCceeEeCC--CCHHHHHHHHHHHH
Q 007205 3 SLDSMGLVFKCLSKGAVDFLVKP--IRKNELKNLWQHVW 39 (613)
Q Consensus 3 s~d~~e~v~kAL~~GA~DYLvKP--v~~~eLk~lwqhV~ 39 (613)
.+...+.+.+|+..||.|||+|| ++..+|...+.+.+
T Consensus 61 ~~~~~~~~~~~~~~Ga~~~l~kp~~~~~~~l~~~i~~~~ 99 (237)
T 3cwo_X 61 AMGQQAMVIEAIKAGAKDFIVNTAAVENPSLITQIAQTF 99 (237)
T ss_dssp CSSTHHHHHHHHHTTCCEEEESHHHHHCTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCHHheEeCCcccChHHHHHHHHHHh
Confidence 34457899999999999999999 77777766555544
No 100
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=90.14 E-value=0.084 Score=35.10 Aligned_cols=19 Identities=26% Similarity=0.555 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhhhccCCCC
Q 007205 558 REAAVTKYRQKKTERCFRK 576 (613)
Q Consensus 558 R~~~l~RyreKrk~R~f~K 576 (613)
|.+.|+||.||||.|...+
T Consensus 1 Rk~SLqRFleKRk~R~~~~ 19 (22)
T 3ogk_Q 1 RRASLHRFLEKRKDRVTSK 19 (26)
T ss_pred CchhHHHHHHHHHHHhhcc
Confidence 5788999999999997654
No 101
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=85.55 E-value=0.79 Score=47.38 Aligned_cols=41 Identities=29% Similarity=0.357 Sum_probs=34.0
Q ss_pred CCCchHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHHh
Q 007205 2 SSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 42 (613)
Q Consensus 2 Ss~d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk~ 42 (613)
++.++.+.+.+|+..||.||+.||+...+|...+..++++.
T Consensus 231 t~~~~~~~~~~~l~~Ga~d~~~kp~~~~~l~~~v~~~~~~~ 271 (459)
T 1w25_A 231 VDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRK 271 (459)
T ss_dssp ECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHH
Confidence 45566778889999999999999999999988777766544
No 102
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=75.78 E-value=0.85 Score=38.36 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=20.3
Q ss_pred CceeEeCCCCHHHHHHHHHHHHHH
Q 007205 18 AVDFLVKPIRKNELKNLWQHVWRR 41 (613)
Q Consensus 18 A~DYLvKPv~~~eLk~lwqhV~rk 41 (613)
|.+||.||++.++|...+++++++
T Consensus 108 ~~~~l~KP~~~~~L~~~i~~~~~~ 131 (138)
T 2b4a_A 108 NLSYLQKPFAISELRAAIDYHKPS 131 (138)
T ss_dssp CEEEEESSCCHHHHHHHHHHTCCC
T ss_pred HHheeeCCCCHHHHHHHHHHHHHh
Confidence 789999999999999888776543
No 103
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=72.09 E-value=1.1 Score=50.95 Aligned_cols=42 Identities=7% Similarity=-0.033 Sum_probs=31.7
Q ss_pred CCCch-HHHHHHHHHcCCceeEeCCCCHHH-HHHHHHHHHHHhh
Q 007205 2 SSLDS-MGLVFKCLSKGAVDFLVKPIRKNE-LKNLWQHVWRRCH 43 (613)
Q Consensus 2 Ss~d~-~e~v~kAL~~GA~DYLvKPv~~~e-Lk~lwqhV~rk~~ 43 (613)
|+.++ .+.+-.+|..||.|||.||++..| |..=++.++||..
T Consensus 92 Ta~~~~~~d~~~~l~~gaddyi~kpf~~~efl~~ri~a~~rr~~ 135 (755)
T 2vyc_A 92 GDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAAMTRYR 135 (755)
T ss_dssp ECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHHHHHHHH
T ss_pred ecCCcchhhccHhHhhcCCceEeCCCCCHHHHHHHHHHHHHHhh
Confidence 44444 556678899999999999999999 6555566667753
No 104
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=71.80 E-value=5.2 Score=36.02 Aligned_cols=36 Identities=19% Similarity=0.245 Sum_probs=31.0
Q ss_pred chHHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHH
Q 007205 5 DSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 41 (613)
Q Consensus 5 d~~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk 41 (613)
.+.|.+.+-|..||- |||.||...-|+.++.-.+|.
T Consensus 83 F~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLrq 118 (121)
T 3q7r_A 83 FDEETSVDLLDRGFW-YLIRPITPRILKSAISLFLSQ 118 (121)
T ss_dssp CCHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHHH
T ss_pred hchHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHhc
Confidence 356888999999999 999999999999888776664
No 105
>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*
Probab=50.87 E-value=18 Score=29.70 Aligned_cols=27 Identities=37% Similarity=0.509 Sum_probs=23.8
Q ss_pred CCcccchhhhhhhhhCCC-CCccccccC
Q 007205 575 RKKVRYQSRKRLAEQRPR-IRGQFVRQT 601 (613)
Q Consensus 575 ~KkirY~~RK~~A~~RpR-vKGrFvk~~ 601 (613)
.|+.-|++|-..|-.|+| -.|||++..
T Consensus 36 rk~YlhESRH~HAm~R~Rg~gGRFl~~~ 63 (64)
T 4g92_A 36 RKPYLHESRHNHAMRRPRGPGGRFLTAD 63 (64)
T ss_dssp CCSCSCHHHHHHHHHSCBCTTSCBCCCC
T ss_pred ccCcchhHHHHHHhcCCcCCCCccccCC
Confidence 466789999999999999 889999865
No 106
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=35.79 E-value=40 Score=35.06 Aligned_cols=35 Identities=14% Similarity=0.236 Sum_probs=30.8
Q ss_pred HHHHHHHHHcCCceeEeCCCCHHHHHHHHHHHHHH
Q 007205 7 MGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 41 (613)
Q Consensus 7 ~e~v~kAL~~GA~DYLvKPv~~~eLk~lwqhV~rk 41 (613)
++++.+||+.|.-=|+-|||..+|++.|++-+-++
T Consensus 84 ~~~a~~al~aGkhVl~EKPl~~~ea~~l~~~A~~~ 118 (372)
T 4gmf_A 84 TQLARHFLARGVHVIQEHPLHPDDISSLQTLAQEQ 118 (372)
T ss_dssp HHHHHHHHHTTCEEEEESCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcEEEecCCCHHHHHHHHHHHHHc
Confidence 78999999999999999999999999998765433
No 107
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=32.36 E-value=0.67 Score=50.16 Aligned_cols=28 Identities=7% Similarity=0.135 Sum_probs=22.2
Q ss_pred HHHHHHHHcCCceeEeCCCCHHHHHHHH
Q 007205 8 GLVFKCLSKGAVDFLVKPIRKNELKNLW 35 (613)
Q Consensus 8 e~v~kAL~~GA~DYLvKPv~~~eLk~lw 35 (613)
+.+.+||+.||.|||+||+..++|..+.
T Consensus 120 ~~av~a~~~ga~d~~~Kp~~~~~l~~~~ 147 (489)
T 3hu3_A 120 DDTVEGITGNLFEVYLKPYFLEAYRPIR 147 (489)
T ss_dssp GGGSSSCCSCHHHHTHHHHHTTTCEEEE
T ss_pred CcccccccchhHHHHhHHHHhhcCcccc
Confidence 3455788999999999999988775443
No 108
>4g68_A ABC transporter; transport protein; HET: XYS; 1.80A {Caldanaerobius} PDB: 4g68_B*
Probab=30.47 E-value=11 Score=38.89 Aligned_cols=11 Identities=0% Similarity=0.392 Sum_probs=7.2
Q ss_pred HHHHHHHHHhh
Q 007205 559 EAAVTKYRQKK 569 (613)
Q Consensus 559 ~~~l~RyreKr 569 (613)
++.|.+|.++-
T Consensus 81 ~~~i~~F~~~~ 91 (456)
T 4g68_A 81 KEIIDQWNKEN 91 (456)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHC
Confidence 45677787654
No 109
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1
Probab=28.05 E-value=12 Score=38.94 Aligned_cols=20 Identities=15% Similarity=-0.017 Sum_probs=12.9
Q ss_pred CcCCHHHHHHHHHHHHHhhh
Q 007205 551 DKNKFADREAAVTKYRQKKT 570 (613)
Q Consensus 551 ~~~~~~~R~~~l~RyreKrk 570 (613)
.+.......+.|..|-..+-
T Consensus 97 gE~~~~~i~~~v~~~i~~~l 116 (332)
T 2es4_D 97 GELTPAALDALVRREIAAQL 116 (332)
T ss_dssp GGSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhC
Confidence 34456777777777775554
No 110
>3rce_A Oligosaccharide transferase to N-glycosylate PROT; oligosaccharyltransferase, membrane protein, helical bundle, glycosylation, acceptor peptide, plasma membrane; HET: PPN; 3.40A {Campylobacter lari}
Probab=27.79 E-value=9.3 Score=43.77 Aligned_cols=9 Identities=33% Similarity=0.575 Sum_probs=4.9
Q ss_pred CCCCCcccc
Q 007205 399 SSFQPTKND 407 (613)
Q Consensus 399 saf~p~~~~ 407 (613)
.=|.||+..
T Consensus 694 ~lFe~V~~~ 702 (724)
T 3rce_A 694 DLFEQVTND 702 (724)
T ss_dssp TTCCEEEEE
T ss_pred hhhhhhhcC
Confidence 356666544
No 111
>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}
Probab=24.51 E-value=16 Score=37.97 Aligned_cols=13 Identities=23% Similarity=0.276 Sum_probs=0.0
Q ss_pred CCccccccccccc
Q 007205 437 EQLTQHYDNCHHL 449 (613)
Q Consensus 437 ~~~~~~~~~~~~~ 449 (613)
.-|+-||||||||
T Consensus 300 ~~~~~~~~~~~~~ 312 (314)
T 3tr9_A 300 LYFQGHHHHHHHH 312 (314)
T ss_dssp -------------
T ss_pred hhccccccccccc
Confidence 4466665555544
No 112
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=24.34 E-value=16 Score=35.91 Aligned_cols=6 Identities=17% Similarity=0.036 Sum_probs=0.0
Q ss_pred cccccc
Q 007205 449 LVHNMQ 454 (613)
Q Consensus 449 ~~~~~~ 454 (613)
|+|.++
T Consensus 10 ~~~~~~ 15 (286)
T 1jr2_A 10 HHHSSG 15 (286)
T ss_dssp ------
T ss_pred cccccc
Confidence 334443
No 113
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}
Probab=23.70 E-value=17 Score=38.17 Aligned_cols=10 Identities=40% Similarity=0.607 Sum_probs=0.0
Q ss_pred cccccccccc
Q 007205 442 HYDNCHHLVH 451 (613)
Q Consensus 442 ~~~~~~~~~~ 451 (613)
||||||||+|
T Consensus 499 ~~~~~~~~~~ 508 (510)
T 4grv_A 499 HHHHHHHHHH 508 (510)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 4444443333
No 114
>4faj_A PRGZ; substrate binding protein, peptide binding protein, pheromon extracellular, membrane anchored; 1.90A {Enterococcus faecalis}
Probab=21.82 E-value=19 Score=37.55 Aligned_cols=19 Identities=21% Similarity=0.046 Sum_probs=11.2
Q ss_pred CcCCHHHHHHHHHHHHHhh
Q 007205 551 DKNKFADREAAVTKYRQKK 569 (613)
Q Consensus 551 ~~~~~~~R~~~l~RyreKr 569 (613)
-+....+=.++.+|.-.-|
T Consensus 135 tqitasdfvaawqrvvdpk 153 (564)
T 4faj_A 135 TQITASDFVAAWQRVVDPK 153 (564)
T ss_dssp CBCCHHHHHHHHHHHHCGG
T ss_pred cEeeHHHHHHHHHhhcCcc
Confidence 3455566667777765433
No 115
>3odm_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta-barrel, lyase; 2.95A {Clostridium perfringens}
Probab=21.50 E-value=20 Score=40.08 Aligned_cols=8 Identities=0% Similarity=-0.226 Sum_probs=4.8
Q ss_pred HHHHHHHH
Q 007205 560 AAVTKYRQ 567 (613)
Q Consensus 560 ~~l~Ryre 567 (613)
..|.||-+
T Consensus 84 kl~s~~~~ 91 (560)
T 3odm_A 84 QIALGLIS 91 (560)
T ss_dssp HHHHHHHT
T ss_pred HHHHhhhh
Confidence 45566666
No 116
>3a5i_A Flagellar biosynthesis protein FLHA; four domains, thioredoxin-like fold, bacterial flagellum BIO bacterial flagellum protein export; 2.80A {Salmonella typhimurium}
Probab=21.14 E-value=20 Score=38.19 Aligned_cols=19 Identities=21% Similarity=0.256 Sum_probs=7.9
Q ss_pred cccchhhhhhhhhCCCCCc
Q 007205 577 KVRYQSRKRLAEQRPRIRG 595 (613)
Q Consensus 577 kirY~~RK~~A~~RpRvKG 595 (613)
+||+..+-.--+.|-+|+|
T Consensus 103 rIrDn~~L~p~~Y~I~i~g 121 (389)
T 3a5i_A 103 HIRDNMDLQPARYRILMKG 121 (389)
T ss_dssp EEEECTTSCTTEEEEEETT
T ss_pred EEEeCCCCCCCeEEEEECC
Confidence 3454443333334444444
No 117
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=20.99 E-value=22 Score=38.35 Aligned_cols=9 Identities=0% Similarity=0.043 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 007205 558 REAAVTKYR 566 (613)
Q Consensus 558 R~~~l~Ryr 566 (613)
|-.+|-.+.
T Consensus 95 ~~~~~A~~L 103 (580)
T 3etc_A 95 YSDKAANFF 103 (580)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 118
>1uoz_A Putative cellulase; hydrolase, glycoside hydrolase, family 6; HET: GLC SSG; 1.10A {Mycobacterium tuberculosis} SCOP: c.6.1.1 PDB: 1up3_A* 1up0_A* 1up2_A*
Probab=20.87 E-value=21 Score=37.13 Aligned_cols=6 Identities=17% Similarity=0.036 Sum_probs=0.4
Q ss_pred cccccc
Q 007205 449 LVHNMQ 454 (613)
Q Consensus 449 ~~~~~~ 454 (613)
|+|.+.
T Consensus 10 ~~~~~~ 15 (315)
T 1uoz_A 10 HHHSSG 15 (315)
T ss_dssp -----C
T ss_pred ccccCC
Confidence 333333
No 119
>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}
Probab=20.83 E-value=21 Score=33.93 Aligned_cols=8 Identities=0% Similarity=0.069 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 007205 560 AAVTKYRQ 567 (613)
Q Consensus 560 ~~l~Ryre 567 (613)
..+..|++
T Consensus 126 ~l~~~~~~ 133 (236)
T 2px7_A 126 RVLEAAQR 133 (236)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 33444443
No 120
>3b9f_I Protein C inhibitor; michaelis complex, acute phase, blood coagulation, cleavage of basic residues, disease mutation; HET: NAG FUC SGN IDS; 1.60A {Homo sapiens} PDB: 2ol2_A*
Probab=20.42 E-value=21 Score=37.29 Aligned_cols=9 Identities=33% Similarity=0.626 Sum_probs=4.4
Q ss_pred HHHHHHhhh
Q 007205 562 VTKYRQKKT 570 (613)
Q Consensus 562 l~RyreKrk 570 (613)
|.+|=+++-
T Consensus 161 IN~WV~~~T 169 (395)
T 3b9f_I 161 INDYVAKQT 169 (395)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 555554443
No 121
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=20.15 E-value=22 Score=38.69 Aligned_cols=7 Identities=29% Similarity=0.667 Sum_probs=3.7
Q ss_pred HHHHHHH
Q 007205 561 AVTKYRQ 567 (613)
Q Consensus 561 ~l~Ryre 567 (613)
.+.+|++
T Consensus 141 ~~~~~~~ 147 (514)
T 2r9r_B 141 AMEMFRE 147 (514)
T ss_dssp HHHHHHH
T ss_pred HHhhhhh
Confidence 4555554
Done!