Query 007206
Match_columns 613
No_of_seqs 410 out of 1753
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 20:23:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007206.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007206hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1718 Dual specificity phosp 100.0 3.3E-31 7.1E-36 250.0 15.0 143 122-265 16-158 (198)
2 smart00195 DSPc Dual specifici 100.0 6.7E-30 1.5E-34 236.2 17.1 138 123-261 1-138 (138)
3 KOG1716 Dual specificity phosp 100.0 6.1E-29 1.3E-33 258.4 18.0 147 120-266 72-220 (285)
4 KOG1717 Dual specificity phosp 100.0 9.6E-29 2.1E-33 247.3 12.3 141 123-264 172-314 (343)
5 cd00127 DSPc Dual specificity 100.0 1.5E-27 3.2E-32 219.5 16.8 138 122-259 1-139 (139)
6 PF00782 DSPc: Dual specificit 100.0 6.9E-28 1.5E-32 221.0 13.6 131 130-261 1-133 (133)
7 KOG0443 Actin regulatory prote 99.9 1.6E-24 3.5E-29 242.2 12.7 148 270-438 514-662 (827)
8 PRK12361 hypothetical protein; 99.9 2.5E-23 5.5E-28 234.0 16.9 142 121-263 93-238 (547)
9 PTZ00242 protein tyrosine phos 99.8 2.3E-19 5E-24 173.1 14.5 144 120-265 8-161 (166)
10 KOG1719 Dual specificity phosp 99.8 4.1E-19 8.8E-24 166.2 10.5 140 125-264 27-172 (183)
11 PTZ00393 protein tyrosine phos 99.8 3.3E-18 7.2E-23 172.2 14.9 122 139-263 107-230 (241)
12 KOG0443 Actin regulatory prote 99.7 2.1E-18 4.6E-23 193.6 7.9 143 273-421 139-294 (827)
13 KOG1720 Protein tyrosine phosp 99.6 1.4E-14 3.1E-19 142.2 13.7 117 142-260 88-206 (225)
14 smart00262 GEL Gelsolin homolo 99.6 1.1E-14 2.4E-19 125.8 9.3 78 290-367 11-89 (90)
15 COG2453 CDC14 Predicted protei 99.6 2.2E-14 4.9E-19 140.0 12.1 96 164-262 69-165 (180)
16 PF05706 CDKN3: Cyclin-depende 99.3 3.7E-12 8E-17 122.2 9.1 108 127-235 40-168 (168)
17 KOG0444 Cytoskeletal regulator 99.3 2.1E-13 4.5E-18 150.6 0.4 141 270-421 1038-1188(1255)
18 KOG0444 Cytoskeletal regulator 99.3 1E-12 2.2E-17 145.2 5.1 143 269-416 618-771 (1255)
19 PF00626 Gelsolin: Gelsolin re 99.3 5.1E-12 1.1E-16 105.2 5.4 70 293-362 6-76 (76)
20 PF03162 Y_phosphatase2: Tyros 99.2 3.2E-11 7E-16 116.4 8.6 117 121-240 5-129 (164)
21 TIGR01244 conserved hypothetic 99.2 2.1E-10 4.7E-15 107.1 13.5 117 123-246 2-129 (135)
22 KOG0445 Actin regulatory prote 99.2 7.5E-11 1.6E-15 130.7 9.1 150 271-449 643-797 (919)
23 KOG2836 Protein tyrosine phosp 99.1 6.8E-10 1.5E-14 102.5 12.4 117 140-259 33-153 (173)
24 smart00012 PTPc_DSPc Protein t 98.9 5.6E-09 1.2E-13 90.5 9.8 87 169-255 4-99 (105)
25 smart00404 PTPc_motif Protein 98.9 5.6E-09 1.2E-13 90.5 9.8 87 169-255 4-99 (105)
26 PF04273 DUF442: Putative phos 98.8 2.3E-08 4.9E-13 90.7 8.5 92 123-220 2-104 (110)
27 PLN02727 NAD kinase 98.7 1E-07 2.3E-12 111.0 11.4 98 129-229 262-369 (986)
28 COG5350 Predicted protein tyro 98.6 2.5E-07 5.3E-12 87.5 10.0 113 141-254 25-147 (172)
29 cd00047 PTPc Protein tyrosine 98.5 2.7E-07 5.9E-12 92.7 9.5 82 175-256 138-226 (231)
30 smart00194 PTPc Protein tyrosi 98.5 5.9E-07 1.3E-11 91.9 9.4 83 174-256 165-253 (258)
31 KOG0445 Actin regulatory prote 98.3 7.2E-07 1.6E-11 99.8 6.9 101 269-375 220-327 (919)
32 PF13350 Y_phosphatase3: Tyros 98.2 5.6E-06 1.2E-10 79.4 9.3 107 129-236 20-158 (164)
33 PRK15375 pathogenicity island 98.2 8.3E-06 1.8E-10 90.4 10.4 91 173-263 429-530 (535)
34 KOG2283 Clathrin coat dissocia 98.2 9.2E-06 2E-10 89.6 10.5 140 120-263 12-175 (434)
35 COG3453 Uncharacterized protei 98.1 3.5E-05 7.6E-10 70.5 11.6 112 122-241 2-125 (130)
36 PF04179 Init_tRNA_PT: Initiat 98.0 3.7E-05 8E-10 85.3 11.9 135 124-258 290-449 (451)
37 KOG1572 Predicted protein tyro 98.0 4E-05 8.7E-10 77.5 10.9 118 120-240 57-186 (249)
38 PF00102 Y_phosphatase: Protei 97.9 4.4E-05 9.4E-10 75.7 9.5 69 188-256 153-230 (235)
39 PF14566 PTPlike_phytase: Inos 97.7 5.7E-05 1.2E-09 71.9 6.5 59 165-225 90-148 (149)
40 PHA02742 protein tyrosine phos 97.7 0.00016 3.5E-09 76.5 10.1 51 201-251 229-284 (303)
41 PHA02747 protein tyrosine phos 97.7 0.00017 3.6E-09 76.7 9.6 54 202-255 230-288 (312)
42 PHA02746 protein tyrosine phos 97.7 0.00022 4.8E-09 76.1 10.1 52 202-253 248-304 (323)
43 PHA02740 protein tyrosine phos 97.6 0.00035 7.7E-09 73.9 10.2 51 201-251 221-276 (298)
44 PHA02738 hypothetical protein; 97.5 0.00043 9.4E-09 73.8 9.9 52 201-252 227-283 (320)
45 COG2365 Protein tyrosine/serin 97.4 0.00025 5.4E-09 73.1 6.1 121 129-249 54-184 (249)
46 KOG0792 Protein tyrosine phosp 97.2 0.001 2.3E-08 78.7 9.1 80 175-254 1036-1121(1144)
47 KOG2386 mRNA capping enzyme, g 97.1 0.00095 2.1E-08 72.6 6.7 114 149-262 64-185 (393)
48 KOG0790 Protein tyrosine phosp 96.8 0.0015 3.3E-08 71.2 5.6 109 140-251 372-509 (600)
49 COG5599 PTP2 Protein tyrosine 96.7 0.004 8.7E-08 64.3 7.0 74 175-252 193-283 (302)
50 KOG0789 Protein tyrosine phosp 96.4 0.0095 2.1E-07 64.8 8.5 53 200-252 298-356 (415)
51 KOG0791 Protein tyrosine phosp 95.5 0.053 1.1E-06 58.4 8.5 60 201-260 287-351 (374)
52 KOG0793 Protein tyrosine phosp 94.9 0.11 2.4E-06 59.8 9.1 61 201-261 927-994 (1004)
53 KOG0260 RNA polymerase II, lar 94.6 0.11 2.4E-06 62.6 8.6 8 410-417 1419-1426(1605)
54 KOG1984 Vesicle coat complex C 94.4 0.12 2.6E-06 60.8 8.4 56 273-328 859-914 (1007)
55 PF14671 DSPn: Dual specificit 94.3 0.23 5E-06 47.2 8.6 101 126-242 4-111 (141)
56 COG5028 Vesicle coat complex C 90.7 0.51 1.1E-05 55.2 6.7 33 297-329 738-770 (861)
57 PTZ00395 Sec24-related protein 89.5 1.4 3E-05 54.8 9.2 35 294-328 1433-1467(1560)
58 KOG4228 Protein tyrosine phosp 88.2 0.69 1.5E-05 56.2 5.5 57 189-245 714-779 (1087)
59 KOG4471 Phosphatidylinositol 3 82.7 2.8 6.1E-05 48.0 6.6 40 187-226 360-400 (717)
60 KOG4228 Protein tyrosine phosp 82.7 2.1 4.5E-05 52.2 6.0 45 201-245 1018-1067(1087)
61 KOG1985 Vesicle coat complex C 77.1 2.4 5.2E-05 50.2 3.9 30 297-326 765-794 (887)
62 cd01518 RHOD_YceA Member of th 69.6 13 0.00027 32.2 5.9 29 199-230 59-87 (101)
63 PF06602 Myotub-related: Myotu 66.5 11 0.00025 41.0 6.0 21 199-219 229-249 (353)
64 COG0607 PspE Rhodanese-related 66.2 12 0.00027 32.3 5.1 69 143-226 14-84 (110)
65 PLN00162 transport protein sec 64.3 21 0.00046 42.9 8.2 70 295-364 635-720 (761)
66 KOG1089 Myotubularin-related p 62.3 22 0.00048 41.1 7.4 37 190-226 332-370 (573)
67 PLN02160 thiosulfate sulfurtra 59.0 13 0.00029 34.7 4.2 30 198-230 78-107 (136)
68 cd01533 4RHOD_Repeat_2 Member 54.3 23 0.0005 31.1 4.8 27 200-229 65-91 (109)
69 PRK01415 hypothetical protein; 51.1 33 0.00071 35.8 5.9 29 199-230 169-197 (247)
70 PRK11784 tRNA 2-selenouridine 47.9 1.9E+02 0.0041 31.6 11.4 63 302-366 161-235 (345)
71 PF00581 Rhodanese: Rhodanese- 45.8 71 0.0015 27.3 6.5 82 146-230 10-98 (113)
72 smart00400 ZnF_CHCC zinc finge 44.1 25 0.00053 27.7 2.9 32 205-238 23-54 (55)
73 cd01448 TST_Repeat_1 Thiosulfa 43.0 38 0.00082 30.2 4.4 30 199-230 77-106 (122)
74 cd01528 RHOD_2 Member of the R 42.9 49 0.0011 28.5 5.0 28 200-230 57-84 (101)
75 PF03861 ANTAR: ANTAR domain; 42.0 39 0.00084 26.8 3.8 26 216-241 15-40 (56)
76 cd01523 RHOD_Lact_B Member of 41.9 31 0.00067 29.7 3.5 29 199-230 59-87 (100)
77 PRK10886 DnaA initiator-associ 40.0 57 0.0012 32.7 5.5 39 183-224 23-61 (196)
78 cd01532 4RHOD_Repeat_1 Member 39.9 41 0.0009 28.7 4.0 30 200-230 49-78 (92)
79 PRK00142 putative rhodanese-re 39.2 48 0.001 35.6 5.1 28 200-230 170-197 (314)
80 cd01520 RHOD_YbbB Member of th 38.8 51 0.0011 30.1 4.6 30 198-229 83-112 (128)
81 PRK05320 rhodanese superfamily 38.7 53 0.0012 34.2 5.3 28 200-230 174-201 (257)
82 TIGR03865 PQQ_CXXCW PQQ-depend 38.5 35 0.00076 32.9 3.6 30 199-230 114-143 (162)
83 cd01534 4RHOD_Repeat_3 Member 34.3 49 0.0011 28.2 3.5 28 200-230 55-82 (95)
84 cd01522 RHOD_1 Member of the R 32.3 61 0.0013 29.1 4.0 29 199-230 62-90 (117)
85 PRK05728 DNA polymerase III su 31.0 60 0.0013 30.7 3.8 26 185-210 13-38 (142)
86 PF03668 ATP_bind_2: P-loop AT 30.8 58 0.0013 34.7 4.1 17 203-219 244-260 (284)
87 PF01807 zf-CHC2: CHC2 zinc fi 30.8 53 0.0012 29.0 3.2 38 205-244 54-91 (97)
88 COG2927 HolC DNA polymerase II 29.5 51 0.0011 31.7 3.0 21 189-209 17-37 (144)
89 PRK13938 phosphoheptose isomer 28.2 1.2E+02 0.0027 30.2 5.7 43 181-226 25-67 (196)
90 PRK14116 gpmA phosphoglyceromu 27.2 1.3E+02 0.0029 30.3 5.9 50 179-234 148-201 (228)
91 KOG0235 Phosphoglycerate mutas 26.9 2.1E+02 0.0045 29.4 7.1 52 179-236 130-185 (214)
92 cd01519 RHOD_HSP67B2 Member of 26.9 78 0.0017 27.2 3.6 29 199-230 64-92 (106)
93 PF04364 DNA_pol3_chi: DNA pol 26.4 69 0.0015 30.1 3.4 24 187-210 15-38 (137)
94 PRK05416 glmZ(sRNA)-inactivati 26.1 71 0.0015 33.9 3.7 35 185-219 222-263 (288)
95 PHA02540 61 DNA primase; Provi 26.1 91 0.002 34.0 4.6 39 202-243 52-91 (337)
96 PRK06646 DNA polymerase III su 25.8 83 0.0018 30.4 3.8 26 185-210 13-38 (154)
97 cd01443 Cdc25_Acr2p Cdc25 enzy 25.4 1.7E+02 0.0037 25.8 5.6 19 200-218 65-83 (113)
98 cd01447 Polysulfide_ST Polysul 24.9 76 0.0016 27.0 3.1 29 198-229 58-86 (103)
99 cd01525 RHOD_Kc Member of the 24.8 91 0.002 26.8 3.7 26 201-229 65-90 (105)
100 cd01529 4RHOD_Repeats Member o 24.0 87 0.0019 26.6 3.3 29 199-230 54-82 (96)
101 PRK14118 gpmA phosphoglyceromu 23.4 1.6E+02 0.0035 29.7 5.6 51 179-235 147-201 (227)
102 COG0279 GmhA Phosphoheptose is 23.1 1.2E+02 0.0027 30.0 4.4 32 183-217 23-54 (176)
103 cd01526 RHOD_ThiF Member of th 22.8 96 0.0021 27.9 3.5 28 199-229 70-97 (122)
104 KOG1015 Transcription regulato 22.5 47 0.001 40.9 1.7 158 175-356 669-831 (1567)
105 cd01444 GlpE_ST GlpE sulfurtra 22.2 1.1E+02 0.0025 25.5 3.7 30 198-230 53-82 (96)
106 PRK05772 translation initiatio 21.1 1.3E+02 0.0028 33.2 4.6 15 198-212 164-178 (363)
107 PRK10287 thiosulfate:cyanide s 20.8 1.7E+02 0.0036 26.2 4.6 18 200-218 59-76 (104)
108 TIGR02981 phageshock_pspE phag 20.5 1.2E+02 0.0026 26.9 3.5 27 200-229 57-83 (101)
109 TIGR02094 more_P_ylases alpha- 20.4 2.1E+02 0.0046 33.6 6.5 45 202-249 161-208 (601)
No 1
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.97 E-value=3.3e-31 Score=249.97 Aligned_cols=143 Identities=32% Similarity=0.519 Sum_probs=135.6
Q ss_pred ccccccCCeEECChhhhcCHHHHHHCCCcEEEEcccCCCCCccCCCcEEEEEEccCCCCCChHHHHHHHHHHHHHHHHcC
Q 007206 122 ECSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCPEYFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQG 201 (613)
Q Consensus 122 ~~seI~p~LYLGs~~~A~d~~~Lk~~GIt~VLNl~~~~~p~~~~~~i~yl~ipI~D~~~~~l~~~~~~av~fI~~al~~g 201 (613)
.+++|++.|||++-.+|.+...|+++|||+|||.+.+. |+..-.++.|..+|+.|.+...+.++|+.+.|.|+....+|
T Consensus 16 ~~SqIt~sLfl~~GvaA~~k~~l~~~~It~IiNat~E~-pn~~l~~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v~~~g 94 (198)
T KOG1718|consen 16 GMSQITPSLFLSNGVAANDKLLLKKRKITCIINATTEV-PNTSLPDIQYMKVPLEDTPQARLYDHFDPVADKIHSVIMRG 94 (198)
T ss_pred chhhcCcceeEeccccccCHHHHHhcCceEEEEcccCC-CCccCCCceeEEEEcccCCcchhhhhhhHHHHHHHHHHhcC
Confidence 47899999999988888999999999999999987655 66667889999999999999999999999999999999999
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHhcCcccCCcchHHHHHHHHhhhccC
Q 007206 202 GRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRVHAM 265 (613)
Q Consensus 202 gkVLVHC~aGvSRSatVViAYLM~~~g~Sl~eAl~~Vr~~Rp~i~PN~~F~~QL~~~Ek~l~~~ 265 (613)
|++||||.+|+|||+++|+||||++.+|++.||+.+||++||+|.||.||++||..||.++++.
T Consensus 95 G~TLvHC~AGVSRSAsLClAYLmK~~~msLreAy~~vKa~RpiIRPN~GFw~QLi~YE~qL~g~ 158 (198)
T KOG1718|consen 95 GKTLVHCVAGVSRSASLCLAYLMKYHCMSLREAYHWVKARRPIIRPNVGFWRQLIDYEQQLFGN 158 (198)
T ss_pred CcEEEEEccccchhHHHHHHHHHHHccchHHHHHHHHHhhCceeCCCccHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999864
No 2
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.97 E-value=6.7e-30 Score=236.23 Aligned_cols=138 Identities=38% Similarity=0.626 Sum_probs=129.0
Q ss_pred cccccCCeEECChhhhcCHHHHHHCCCcEEEEcccCCCCCccCCCcEEEEEEccCCCCCChHHHHHHHHHHHHHHHHcCC
Q 007206 123 CSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCPEYFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGG 202 (613)
Q Consensus 123 ~seI~p~LYLGs~~~A~d~~~Lk~~GIt~VLNl~~~~~p~~~~~~i~yl~ipI~D~~~~~l~~~~~~av~fI~~al~~gg 202 (613)
+++|.|+||+|+.+.+.+.+.|+++||++||||+.+.. .....++.|+++|+.|....++...+..+++||++++++|+
T Consensus 1 ~~~I~~~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~~-~~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~ 79 (138)
T smart00195 1 PSEILPHLYLGSYSSALNLALLKKLGITHVINVTNEVP-NLNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGG 79 (138)
T ss_pred CcEEeCCeEECChhHcCCHHHHHHcCCCEEEEccCCCC-CCCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCC
Confidence 47899999999999999999999999999999986543 34567899999999998788888999999999999999999
Q ss_pred eEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHhcCcccCCcchHHHHHHHHhh
Q 007206 203 RVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKR 261 (613)
Q Consensus 203 kVLVHC~aGvSRSatVViAYLM~~~g~Sl~eAl~~Vr~~Rp~i~PN~~F~~QL~~~Ek~ 261 (613)
+|||||.+|+|||+++++||||+.+||++++|+++|+++||.+.||.+|++||+.||++
T Consensus 80 ~VlVHC~~G~~RS~~v~~~yl~~~~~~~~~~A~~~v~~~R~~~~p~~~~~~qL~~~e~~ 138 (138)
T smart00195 80 KVLVHCQAGVSRSATLIIAYLMKYRNLSLNDAYDFVKDRRPIISPNFGFLRQLIEYERK 138 (138)
T ss_pred eEEEECCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHHCCccCCCHhHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999874
No 3
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.96 E-value=6.1e-29 Score=258.39 Aligned_cols=147 Identities=41% Similarity=0.670 Sum_probs=135.7
Q ss_pred ccccccccCCeEECChhhhcCHHHHHHCCCcEEEEcccCCCCC-ccC-CCcEEEEEEccCCCCCChHHHHHHHHHHHHHH
Q 007206 120 DKECSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCPE-YFK-GDLVYKTLWLQDSPSEDITSILYDVFDYFEDV 197 (613)
Q Consensus 120 ~~~~seI~p~LYLGs~~~A~d~~~Lk~~GIt~VLNl~~~~~p~-~~~-~~i~yl~ipI~D~~~~~l~~~~~~av~fI~~a 197 (613)
...+.+|.|+||+|+...+.+.+.|+++||+||||+....... +.. ..+.|+++++.|.+..+|..+|+++++||+.+
T Consensus 72 ~~~~~~i~p~l~lg~~~~~~~~~~l~~~~it~vln~~~~~~~~~~~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~a 151 (285)
T KOG1716|consen 72 GNPIVEILPNLYLGSQGVASDPDLLKKLGITHVLNVSSSCPNPRFLKEQGIKYLRIPVEDNPSTDILQHFPEAISFIEKA 151 (285)
T ss_pred cCCceeecCCceecCcccccchhhHHHcCCCEEEEecccCCccccccccCceEEeccccCCccccHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999987544332 233 38899999999999999999999999999999
Q ss_pred HHcCCeEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHhcCcccCCcchHHHHHHHHhhhccCC
Q 007206 198 REQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRVHAMP 266 (613)
Q Consensus 198 l~~ggkVLVHC~aGvSRSatVViAYLM~~~g~Sl~eAl~~Vr~~Rp~i~PN~~F~~QL~~~Ek~l~~~~ 266 (613)
+.+|++|||||.+|+|||+|++|||||++++|++++|+++|+.+|+++.||.+|+.||++|++.+....
T Consensus 152 ~~~~~~vlVHC~~GvSRSat~viAYlM~~~~~~l~~A~~~vk~~R~~i~PN~gf~~QL~~~e~~l~~~~ 220 (285)
T KOG1716|consen 152 REKGGKVLVHCQAGVSRSATLVIAYLMKYEGLSLEDAYELVKSRRPIISPNFGFLRQLLEFEKRLSKKS 220 (285)
T ss_pred HhCCCeEEEEcCCccchhHHHHHHHHHHHcCCCHHHHHHHHHHhCCccCCCHHHHHHHHHHHHhhccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999987643
No 4
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.96 E-value=9.6e-29 Score=247.25 Aligned_cols=141 Identities=29% Similarity=0.570 Sum_probs=132.8
Q ss_pred cccccCCeEECChhhhcCHHHHHHCCCcEEEEcccCCCCCccC--CCcEEEEEEccCCCCCChHHHHHHHHHHHHHHHHc
Q 007206 123 CSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCPEYFK--GDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQ 200 (613)
Q Consensus 123 ~seI~p~LYLGs~~~A~d~~~Lk~~GIt~VLNl~~~~~p~~~~--~~i~yl~ipI~D~~~~~l~~~~~~av~fI~~al~~ 200 (613)
+.+|+|+||||+..++.+.+.|+++||++|||++. ..|+.|+ +++.|+.||+.|+..+++.++|++|+.||++++.+
T Consensus 172 PV~ilp~LYLg~a~ds~NldvLkk~gI~yviNVTp-nlpn~fe~~g~f~YkqipisDh~Sqnls~ffpEAIsfIdeArsk 250 (343)
T KOG1717|consen 172 PVEILPNLYLGCAKDSTNLDVLKKYGIKYVINVTP-NLPNNFENNGEFIYKQIPISDHASQNLSQFFPEAISFIDEARSK 250 (343)
T ss_pred chhhccchhcccccccccHHHHHhcCceEEEecCC-CCcchhhcCCceeEEeeeccchhhhhhhhhhHHHHHHHHHhhcc
Confidence 67899999999999999999999999999999875 4466664 47899999999999999999999999999999999
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHhcCcccCCcchHHHHHHHHhhhcc
Q 007206 201 GGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRVHA 264 (613)
Q Consensus 201 ggkVLVHC~aGvSRSatVViAYLM~~~g~Sl~eAl~~Vr~~Rp~i~PN~~F~~QL~~~Ek~l~~ 264 (613)
+..|||||.+|||||+||++||||++..+++++||++|+.++..|.||.+|+.||..||+.+-.
T Consensus 251 ~cgvLVHClaGISRSvTvtvaYLMqkl~lslndAyd~Vk~kksnisPNFnFMgQLldfertlgl 314 (343)
T KOG1717|consen 251 NCGVLVHCLAGISRSVTVTVAYLMQKLNLSLNDAYDFVKHKKSNISPNFNFMGQLLDFERTLGL 314 (343)
T ss_pred CCcEEEeeeccccchhHHHHHHHHHHhccchhhHHHHHHHhccCCCCCcchhHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999997743
No 5
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.95 E-value=1.5e-27 Score=219.51 Aligned_cols=138 Identities=42% Similarity=0.676 Sum_probs=128.2
Q ss_pred ccccccCCeEECChhhhcCHHHHHHCCCcEEEEcccCCCC-CccCCCcEEEEEEccCCCCCChHHHHHHHHHHHHHHHHc
Q 007206 122 ECSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCP-EYFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQ 200 (613)
Q Consensus 122 ~~seI~p~LYLGs~~~A~d~~~Lk~~GIt~VLNl~~~~~p-~~~~~~i~yl~ipI~D~~~~~l~~~~~~av~fI~~al~~ 200 (613)
++++|.|+||+|+.+++.+.+.|+++||++||||+..... .....++.|+++|+.|....++...++.+++||+..+++
T Consensus 1 ~~~~i~~~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~ 80 (139)
T cd00127 1 PLSEITPGLYLGSYPAASDKELLKKLGITHVLNVAKEVPNENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDAREK 80 (139)
T ss_pred CcCEEcCCeEECChhHhcCHHHHHHcCCCEEEEcccCCCCcccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHHHhc
Confidence 3689999999999999999999999999999999865543 344578999999999988888888999999999999999
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHhcCcccCCcchHHHHHHHH
Q 007206 201 GGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQ 259 (613)
Q Consensus 201 ggkVLVHC~aGvSRSatVViAYLM~~~g~Sl~eAl~~Vr~~Rp~i~PN~~F~~QL~~~E 259 (613)
|++|||||.+|+|||+++++||||.++++++++|+++||++||.+.||.+|+.||..||
T Consensus 81 ~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~a~~~vr~~r~~~~~~~~~~~~l~~~~ 139 (139)
T cd00127 81 GGKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFVKSRRPIISPNAGFMRQLKEYE 139 (139)
T ss_pred CCcEEEECCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHCCccCCCHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999996
No 6
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.95 E-value=6.9e-28 Score=220.96 Aligned_cols=131 Identities=37% Similarity=0.584 Sum_probs=122.0
Q ss_pred eEECChhhhcCHHHHHHCCCcEEEEcccCCCCC--ccCCCcEEEEEEccCCCCCChHHHHHHHHHHHHHHHHcCCeEEEE
Q 007206 130 IYLGSDAVAKNRGILRQNGITHVLNCVGFVCPE--YFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVH 207 (613)
Q Consensus 130 LYLGs~~~A~d~~~Lk~~GIt~VLNl~~~~~p~--~~~~~i~yl~ipI~D~~~~~l~~~~~~av~fI~~al~~ggkVLVH 207 (613)
||||+...+. .+.|+++||++|||++.+.... ....++.|+++|+.|....++...|+.+++||+++..+|++||||
T Consensus 1 lylG~~~~a~-~~~l~~~~I~~Vin~~~~~~~~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVH 79 (133)
T PF00782_consen 1 LYLGSYPAAS-IAFLKNLGITHVINLQEECPNPYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVH 79 (133)
T ss_dssp EEEEEHHHHC-HHHHHHTTEEEEEECSSSSSTSHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEE
T ss_pred CEEeCHHHHh-HHHHHHCCCCEEEEccCCCcCchhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEE
Confidence 7999999999 9999999999999998654331 345689999999999888899999999999999999999999999
Q ss_pred cCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHhcCcccCCcchHHHHHHHHhh
Q 007206 208 CCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKR 261 (613)
Q Consensus 208 C~aGvSRSatVViAYLM~~~g~Sl~eAl~~Vr~~Rp~i~PN~~F~~QL~~~Ek~ 261 (613)
|.+|+|||+++++||||++++|++++|+++|+++||.+.||.+|++||.+||++
T Consensus 80 C~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~e~~ 133 (133)
T PF00782_consen 80 CKAGLSRSGAVAAAYLMKKNGMSLEEAIEYVRSRRPQINPNPSFIRQLYEYEKK 133 (133)
T ss_dssp ESSSSSHHHHHHHHHHHHHHTSSHHHHHHHHHHHSTTSTHHHHHHHHHHHHHHH
T ss_pred eCCCcccchHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999999999999974
No 7
>KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton]
Probab=99.91 E-value=1.6e-24 Score=242.24 Aligned_cols=148 Identities=22% Similarity=0.311 Sum_probs=129.2
Q ss_pred cccceeeeecCCCCCCCccccccccCCCcccccCCCCeEEEecCCeeEEEeCCCCChhhHHHHHHHHHHHHHHhhcCCce
Q 007206 270 NSMLRIYRIAPHSSYDPLHLVPKLLNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMMSNRAREAANQVIRYEKAQGQI 349 (613)
Q Consensus 270 ss~~RLYRV~g~s~~~~~~lVpk~ev~~~~sSLnS~dvFIL~t~~~IYVW~Gk~ss~~er~~a~~~A~~i~~~e~~~~~i 349 (613)
..-++||||+|..+++++++ ||++.+++|||+|||||++++.+|+|+|++|+..+++.|+..+..|. ..+.
T Consensus 514 ~~~t~LFqV~Gt~~~n~kAv----eV~~~A~SLNSsd~fvL~t~s~~ylW~G~gss~~e~e~A~~v~~~l~-----~~~~ 584 (827)
T KOG0443|consen 514 APSTRLFQVQGTGPSNTKAV----EVPAVASSLNSSDCFVLKTGSSVYLWCGKGSSGDEREMAKRVLDLLK-----RCQS 584 (827)
T ss_pred CCceEEEEEeccCcccceeE----eeccccccccccceEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHHh-----cCCh
Confidence 34579999999999998887 99999999999999999999999999999999876666666665554 3556
Q ss_pred EEecCCCChhhhHHhcCCCccCCCCC-cccccCCCcceeEeecCCccEEEecccCCCcCCCChhhHHhhhcCCCCCCeee
Q 007206 350 TSIKEGEEPLEFWDALVRGQFFADGC-NKEEVKNEQVSFSGSNKIATLMQDGAGEIDEYDLDFELFHKALDGGVVPPFSV 428 (613)
Q Consensus 350 ~vV~EG~Ep~eFW~aLGGk~~y~~~~-~~~~~~~~pRLF~cSn~sG~fv~e~~~~f~Q~DLd~~~~~~~~~gg~~p~~~~ 428 (613)
+.|.||+||++||++||||.+|+... ........||||.|++.+|.|+.+++.+|+||||+.++|| +
T Consensus 585 ~~v~EG~Ep~~FWe~LGGk~~Y~~sk~~~~~~~~~PrLF~Cs~~~g~f~~~EI~~F~QdDL~tdDi~------------l 652 (827)
T KOG0443|consen 585 TAVKEGSEPDEFWELLGGKAEYPSSKRLEEKPERDPRLFSCSNKTGSFVVEEIYNFTQDDLMTDDIM------------L 652 (827)
T ss_pred hhhhcCCCchhhHHHcCCCCCCCcCccccccCCCCCcEEEEEecCCcEEEEEecCcchhhccccceE------------E
Confidence 78999999999999999999999887 4555678899999999999999999999999999999875 6
Q ss_pred cCCCcceeec
Q 007206 429 SNAGSETCVP 438 (613)
Q Consensus 429 ~~~~~e~~l~ 438 (613)
+|++.|||+=
T Consensus 653 LDt~~evfvW 662 (827)
T KOG0443|consen 653 LDTWSEVFVW 662 (827)
T ss_pred EecCceEEEE
Confidence 7788888873
No 8
>PRK12361 hypothetical protein; Provisional
Probab=99.90 E-value=2.5e-23 Score=233.98 Aligned_cols=142 Identities=20% Similarity=0.298 Sum_probs=127.0
Q ss_pred cccccccCCeEECChhhhcCHHHHHHCCCcEEEEcccCCCC---CccCCCcEEEEEEccCCCCCChHHHHHHHHHHHHHH
Q 007206 121 KECSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCP---EYFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDV 197 (613)
Q Consensus 121 ~~~seI~p~LYLGs~~~A~d~~~Lk~~GIt~VLNl~~~~~p---~~~~~~i~yl~ipI~D~~~~~l~~~~~~av~fI~~a 197 (613)
..+++|.|+||||+...+.+.+.|+++||++||||+.+... .....++.|+++|+.|...+.+ .+|+++++||+++
T Consensus 93 ~~~~~I~~~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~~~~~~~~~~~~i~yl~iPi~D~~~p~~-~~l~~a~~~i~~~ 171 (547)
T PRK12361 93 PAIQKIDENLYLGCRLFPADLEKLKSNKITAILDVTAEFDGLDWSLTEEDIDYLNIPILDHSVPTL-AQLNQAINWIHRQ 171 (547)
T ss_pred CcceEEcCcEEECCCCCcccHHHHHHcCCCEEEEcccccccccccccccCceEEEeecCCCCCCcH-HHHHHHHHHHHHH
Confidence 44789999999999999999999999999999999865322 2345678999999999876654 7899999999999
Q ss_pred HHcCCeEEEEcCCCCchhHHHHHHHHHHh-cCCCHHHHHHHHHHhcCcccCCcchHHHHHHHHhhhc
Q 007206 198 REQGGRVFVHCCQGVSRSTSLVIAYLMWR-EGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRVH 263 (613)
Q Consensus 198 l~~ggkVLVHC~aGvSRSatVViAYLM~~-~g~Sl~eAl~~Vr~~Rp~i~PN~~F~~QL~~~Ek~l~ 263 (613)
+++|++|||||.+|+|||+++++||||.+ .++++++|+++||++||.+.||..++++|++|.+...
T Consensus 172 ~~~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~v~~n~~q~~~l~~~~~~~~ 238 (547)
T PRK12361 172 VRANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRKTARLNKRQLRALEKMLEQGK 238 (547)
T ss_pred HHCCCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999977 5899999999999999999999999999999887643
No 9
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.81 E-value=2.3e-19 Score=173.06 Aligned_cols=144 Identities=17% Similarity=0.188 Sum_probs=115.0
Q ss_pred ccccccccCCeEECChhhh----cCHHHHHHCCCcEEEEcccCCCC-Ccc-CCCcEEEEEEccCCCCCChHHHHHHHHHH
Q 007206 120 DKECSRIADHIYLGSDAVA----KNRGILRQNGITHVLNCVGFVCP-EYF-KGDLVYKTLWLQDSPSEDITSILYDVFDY 193 (613)
Q Consensus 120 ~~~~seI~p~LYLGs~~~A----~d~~~Lk~~GIt~VLNl~~~~~p-~~~-~~~i~yl~ipI~D~~~~~l~~~~~~av~f 193 (613)
++.++-|..++..=..+.. .+.+.|+++||++||+++....+ +.+ ..++.|+++|+.|...+.. ..+.+.+++
T Consensus 8 ~~~~~~~~~r~~~~~~P~~~~~~~~l~~L~~~gI~~Iv~l~~~~~~~~~~~~~gi~~~~~p~~D~~~P~~-~~i~~~~~~ 86 (166)
T PTZ00242 8 DRQIEYVLFKFLILDAPSPSNLPLYIKELQRYNVTHLVRVCGPTYDAELLEKNGIEVHDWPFDDGAPPPK-AVIDNWLRL 86 (166)
T ss_pred CcceeeeceEEEEecCCCcccHHHHHHHHHhCCCeEEEecCCCCCCHHHHHHCCCEEEecCCCCCCCCCH-HHHHHHHHH
Confidence 4556677777776665544 34588999999999999754322 112 3488999999988665443 567778888
Q ss_pred HHHHHHc----CCeEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHhcCcccCCcchHHHHHHHHhhhccC
Q 007206 194 FEDVREQ----GGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRVHAM 265 (613)
Q Consensus 194 I~~al~~----ggkVLVHC~aGvSRSatVViAYLM~~~g~Sl~eAl~~Vr~~Rp~i~PN~~F~~QL~~~Ek~l~~~ 265 (613)
+++++.. |++|+|||.+|+|||++++++|||.+.++++++|+++||++||.+ .+..++.+|.+|.+..++.
T Consensus 87 i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~eAi~~vr~~R~~~-i~~~Q~~~l~~~~~~~~~~ 161 (166)
T PTZ00242 87 LDQEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREKRKGA-INQTQLQFLKKYKPRKKAA 161 (166)
T ss_pred HHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCCC-chHHHHHHHHHHHHHhccC
Confidence 8887754 999999999999999999999999998999999999999999976 4789999999999876543
No 10
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.79 E-value=4.1e-19 Score=166.24 Aligned_cols=140 Identities=18% Similarity=0.200 Sum_probs=122.3
Q ss_pred cccCCeEECChhhh-cCHHHHHHCCCcEEEEcccCCCCC-----ccCCCcEEEEEEccCCCCCChHHHHHHHHHHHHHHH
Q 007206 125 RIADHIYLGSDAVA-KNRGILRQNGITHVLNCVGFVCPE-----YFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVR 198 (613)
Q Consensus 125 eI~p~LYLGs~~~A-~d~~~Lk~~GIt~VLNl~~~~~p~-----~~~~~i~yl~ipI~D~~~~~l~~~~~~av~fI~~al 198 (613)
+|.+++.+|-.+.. ++.+.+++.|+..|+.|.....-. +-.-+++++.+|..|....+-...+.++++||++..
T Consensus 27 ~~~~~v~~~~~~FrS~~~~~i~ke~v~gvv~~ne~yE~~a~s~~wk~~giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k~a 106 (183)
T KOG1719|consen 27 RIDEFVILGAMPFRSMDVPLIKKENVGGVVTLNEPYELLAPSNLWKNYGIEFLVIPTRDYTGAPSLENIQKAVEFIHKNA 106 (183)
T ss_pred eecceEEEeecccccccchHHHhcCCCeEEEeCCchhhhhhhHHHHhccceeEEeccccccCCCCHHHHHHHHHHHHhcc
Confidence 78889999986643 678899999999999987532211 123478999999999877776788999999999999
Q ss_pred HcCCeEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHhcCcccCCcchHHHHHHHHhhhcc
Q 007206 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRVHA 264 (613)
Q Consensus 199 ~~ggkVLVHC~aGvSRSatVViAYLM~~~g~Sl~eAl~~Vr~~Rp~i~PN~~F~~QL~~~Ek~l~~ 264 (613)
..|+.|||||++|++||+|+|+||||...+|+.++|+++||++||.|-...++++.|.+|.+....
T Consensus 107 sLGktvYVHCKAGRtRSaTvV~cYLmq~~~wtpe~A~~~vr~iRp~VlL~~~Qw~~l~ef~~~~~~ 172 (183)
T KOG1719|consen 107 SLGKTVYVHCKAGRTRSATVVACYLMQHKNWTPEAAVEHVRKIRPRVLLRPAQWDVLKEFYKQIVA 172 (183)
T ss_pred ccCCeEEEEecCCCccchhhhhhhhhhhcCCCHHHHHHHHHhcCcceeecHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999887644
No 11
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.77 E-value=3.3e-18 Score=172.21 Aligned_cols=122 Identities=16% Similarity=0.193 Sum_probs=106.1
Q ss_pred cCHHHHHHCCCcEEEEcccCCCCC--ccCCCcEEEEEEccCCCCCChHHHHHHHHHHHHHHHHcCCeEEEEcCCCCchhH
Q 007206 139 KNRGILRQNGITHVLNCVGFVCPE--YFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRST 216 (613)
Q Consensus 139 ~d~~~Lk~~GIt~VLNl~~~~~p~--~~~~~i~yl~ipI~D~~~~~l~~~~~~av~fI~~al~~ggkVLVHC~aGvSRSa 216 (613)
..++.|+++||++||++++...+. ....+|.++++|+.|...++. ..+.+++++|++.++.|++|+|||.+|+|||+
T Consensus 107 ~yl~eLk~~gV~~lVrlcE~~Yd~~~~~~~GI~~~~lpipDg~aPs~-~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTG 185 (241)
T PTZ00393 107 LYIKEMKNYNVTDLVRTCERTYNDGEITSAGINVHELIFPDGDAPTV-DIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAP 185 (241)
T ss_pred HHHHHHHHcCCCEEEECCCCCCCHHHHHHcCCeEEEeecCCCCCCCH-HHHHHHHHHHHHHHhcCCeEEEECCCCCCHHH
Confidence 456889999999999997654332 234589999999999876664 67888999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhcCcccCCcchHHHHHHHHhhhc
Q 007206 217 SLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRVH 263 (613)
Q Consensus 217 tVViAYLM~~~g~Sl~eAl~~Vr~~Rp~i~PN~~F~~QL~~~Ek~l~ 263 (613)
++++||||. .|+++++|+++||++||.+ +|..++..|++|+++..
T Consensus 186 tl~AayLI~-~GmspeeAI~~VR~~RPgA-In~~Q~~fL~~y~~~~~ 230 (241)
T PTZ00393 186 VLASIVLIE-FGMDPIDAIVFIRDRRKGA-INKRQLQFLKAYKKKKK 230 (241)
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcc
Confidence 999999998 6999999999999999987 58899999999998764
No 12
>KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton]
Probab=99.74 E-value=2.1e-18 Score=193.61 Aligned_cols=143 Identities=19% Similarity=0.214 Sum_probs=119.9
Q ss_pred ceeeeecCCCCCCCccccccccCCCcccccCCCCeEEEecCCeeEEEeCCCCChhhHHHHHHHHHHHHHHhh-cCCceEE
Q 007206 273 LRIYRIAPHSSYDPLHLVPKLLNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMMSNRAREAANQVIRYEK-AQGQITS 351 (613)
Q Consensus 273 ~RLYRV~g~s~~~~~~lVpk~ev~~~~sSLnS~dvFIL~t~~~IYVW~Gk~ss~~er~~a~~~A~~i~~~e~-~~~~i~v 351 (613)
.||||++|. +.|++.+|+..|++||.+||||||+++.||+|+|++++..||.+|+++|++|++.++ +.++|.+
T Consensus 139 ~rL~~~KGk------r~vr~~eV~~~~sS~N~gDvFILD~g~~i~qw~G~~Ss~~ER~KAl~~~~~IrD~e~~Gr~~V~v 212 (827)
T KOG0443|consen 139 VRLFHCKGK------RNVRVKEVPFSWSSLNHGDVFILDTGSKIYQWNGPNSSIQERAKALEVVQYIRDNERDGRCEVAV 212 (827)
T ss_pred eEEEEEccc------eeEEEEEEEeehhhcCCCcEEEEEcCCceEEEcCCcccHHHHHHHHHHHHHhhccCCCCceeEEE
Confidence 399999997 458889999999999999999999999999999999999999999999999999988 6688889
Q ss_pred ecCCCC-----hhhhHHhcCCCcc-CCCCC----cccccCCCcceeEeecCCccEEEecc--cCCCcCCCChhhHHhhhc
Q 007206 352 IKEGEE-----PLEFWDALVRGQF-FADGC----NKEEVKNEQVSFSGSNKIATLMQDGA--GEIDEYDLDFELFHKALD 419 (613)
Q Consensus 352 V~EG~E-----p~eFW~aLGGk~~-y~~~~----~~~~~~~~pRLF~cSn~sG~fv~e~~--~~f~Q~DLd~~~~~~~~~ 419 (613)
|++|++ ..+||..+||..+ .+... ........+|||+||+++|.+..... .+++|+.||.++.+.+|.
T Consensus 213 vdd~~~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~~~kLYkVsd~~g~l~v~~va~~~l~qdlLd~~dCYILD~ 292 (827)
T KOG0443|consen 213 VDDGKEAADSDLGEFWGFVLGFAPALPKKSPDDDDEQANSAAAKLYKVSDASGGLKVPVVADGPLTKDLLDTEDCYILDC 292 (827)
T ss_pred ecCcccccCchHHHHHHhhcCcCccCCCCCcchhhhhhhccccEEEEEeccCCCccccccccchhhHHhhccCCeEEEec
Confidence 998764 4589999998655 43322 22235678999999999999944433 459999999999877777
Q ss_pred CC
Q 007206 420 GG 421 (613)
Q Consensus 420 gg 421 (613)
||
T Consensus 293 g~ 294 (827)
T KOG0443|consen 293 GG 294 (827)
T ss_pred CC
Confidence 75
No 13
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.59 E-value=1.4e-14 Score=142.18 Aligned_cols=117 Identities=18% Similarity=0.338 Sum_probs=97.5
Q ss_pred HHHHHCCCcEEEEcccCCCC--CccCCCcEEEEEEccCCCCCChHHHHHHHHHHHHHHHHcCCeEEEEcCCCCchhHHHH
Q 007206 142 GILRQNGITHVLNCVGFVCP--EYFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLV 219 (613)
Q Consensus 142 ~~Lk~~GIt~VLNl~~~~~p--~~~~~~i~yl~ipI~D~~~~~l~~~~~~av~fI~~al~~ggkVLVHC~aGvSRSatVV 219 (613)
..++.++++.|+.+.+...+ .+...+|.++++++.|...+++ ..+.+.++.++.+.+ ||+|.|||++|+||+++|+
T Consensus 88 ~~~~~~~v~s~vrln~~~yd~~~f~~~Gi~h~~l~f~Dg~tP~~-~~v~~fv~i~e~~~~-~g~iaVHCkaGlGRTG~li 165 (225)
T KOG1720|consen 88 QYFKNNNVTSIVRLNKRLYDAKRFTDAGIDHHDLFFADGSTPTD-AIVKEFVKIVENAEK-GGKIAVHCKAGLGRTGTLI 165 (225)
T ss_pred HHhhhcccceEEEcCCCCCChHHhcccCceeeeeecCCCCCCCH-HHHHHHHHHHHHHHh-cCeEEEEeccCCCchhHHH
Confidence 56778999999998765433 2345679999999999887776 566777888888888 9999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHhcCcccCCcchHHHHHHHHh
Q 007206 220 IAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQK 260 (613)
Q Consensus 220 iAYLM~~~g~Sl~eAl~~Vr~~Rp~i~PN~~F~~QL~~~Ek 260 (613)
+||||+.+|++..||++.||..||.+.....+...+.++..
T Consensus 166 Ac~lmy~~g~ta~eaI~~lR~~RpG~V~gpqQ~~l~~~q~~ 206 (225)
T KOG1720|consen 166 ACYLMYEYGMTAGEAIAWLRICRPGAVIGPQQHKLLHKQRD 206 (225)
T ss_pred HHHHHHHhCCCHHHHHHHHHhcCCccccCHHHHHHHHHHHH
Confidence 99999999999999999999999977666666666665544
No 14
>smart00262 GEL Gelsolin homology domain. Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains.
Probab=99.56 E-value=1.1e-14 Score=125.77 Aligned_cols=78 Identities=27% Similarity=0.366 Sum_probs=70.3
Q ss_pred cccccCCCcccccCCCCeEEEecCCeeEEEeCCCCChhhHHHHHHHHHHHHHHhh-cCCceEEecCCCChhhhHHhcCC
Q 007206 290 VPKLLNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMMSNRAREAANQVIRYEK-AQGQITSIKEGEEPLEFWDALVR 367 (613)
Q Consensus 290 Vpk~ev~~~~sSLnS~dvFIL~t~~~IYVW~Gk~ss~~er~~a~~~A~~i~~~e~-~~~~i~vV~EG~Ep~eFW~aLGG 367 (613)
+...++++..++|+++|||||+++..||||+|++|+..+|..|+..|..+.+..+ ...++.+|+||.|+.+||..|||
T Consensus 11 ~~~~~~~~~~~~L~s~d~fild~~~~iyvW~G~~as~~ek~~A~~~a~~~~~~~~~~~~~i~~v~eg~E~~~F~~~f~~ 89 (90)
T smart00262 11 VRVPEVPFSQGSLNSGDCYILDTGSEIYVWVGKKSSQDEKKKAAELAVELDDTLGPGPVQVRVVDEGKEPPEFWSLFGG 89 (90)
T ss_pred EEEEEcCCCHHHCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCHHHHHHhCC
Confidence 3444778899999999999999999999999999999999999999988887665 55789999999999999999997
No 15
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.56 E-value=2.2e-14 Score=139.96 Aligned_cols=96 Identities=22% Similarity=0.309 Sum_probs=80.6
Q ss_pred cCCCcEEEEEEccCCCCCChHHHHHHHHHHHHHHHHcCCeEEEEcCCCCchhHHHHHHHHHHh-cCCCHHHHHHHHHHhc
Q 007206 164 FKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWR-EGQSFEDAFQYVKAAR 242 (613)
Q Consensus 164 ~~~~i~yl~ipI~D~~~~~l~~~~~~av~fI~~al~~ggkVLVHC~aGvSRSatVViAYLM~~-~g~Sl~eAl~~Vr~~R 242 (613)
...++.++++|+.|+..+++ ..+.+++++|+.++.+|++|+|||.+|+|||+|+++||||.+ +++..++|+.+++.+|
T Consensus 69 ~~~~~~~~~~~~~D~~~p~~-~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~~r 147 (180)
T COG2453 69 ENDGIQVLHLPILDGTVPDL-EDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRRRR 147 (180)
T ss_pred ccCCceeeeeeecCCCCCcH-HHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHhcC
Confidence 35678899999999998888 889999999999999999999999999999999999999999 4666777777788888
Q ss_pred CcccCCcchHHHHHHHHhhh
Q 007206 243 GVTNPNMGFACQLLLCQKRV 262 (613)
Q Consensus 243 p~i~PN~~F~~QL~~~Ek~l 262 (613)
+. ++.....++..|+...
T Consensus 148 ~~--~v~~~~q~~~~~e~~~ 165 (180)
T COG2453 148 PG--AVVTEIQHLFELEQEL 165 (180)
T ss_pred Cc--ccccHHHHHHHHHHHH
Confidence 76 5555555555555543
No 16
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.33 E-value=3.7e-12 Score=122.22 Aligned_cols=108 Identities=19% Similarity=0.260 Sum_probs=69.6
Q ss_pred cCCeEECChhh----------hcCHHHHHHCCCcEEEEcccCC------CCC----ccCCCcEEEEEEccCCCCCChHHH
Q 007206 127 ADHIYLGSDAV----------AKNRGILRQNGITHVLNCVGFV------CPE----YFKGDLVYKTLWLQDSPSEDITSI 186 (613)
Q Consensus 127 ~p~LYLGs~~~----------A~d~~~Lk~~GIt~VLNl~~~~------~p~----~~~~~i~yl~ipI~D~~~~~l~~~ 186 (613)
...|.|...+- ..|.+.|+..||+.||.++... .+. +-..++.++|+||.|...+++..
T Consensus 40 ~~~Lglt~~PG~k~~d~~RdL~~DL~~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd~~~- 118 (168)
T PF05706_consen 40 SGFLGLTFLPGCKFKDWRRDLQADLERLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAPDFAA- 118 (168)
T ss_dssp SSEEEEES-TT-EETTEEB-HHHHHHHHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS---HHH-
T ss_pred cceeeeecCCCcccccccchHHHHHHHHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCCCHHH-
Confidence 34666666554 3577889999999999987521 122 12458999999999999888644
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcCCCCchhHHHHHHHHHHhc-CCCHHHHH
Q 007206 187 LYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWRE-GQSFEDAF 235 (613)
Q Consensus 187 ~~~av~fI~~al~~ggkVLVHC~aGvSRSatVViAYLM~~~-g~Sl~eAl 235 (613)
+.++++-|...+++|++|+|||+.|+|||++|++++|+... .+++++|+
T Consensus 119 ~~~i~~eL~~~L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 119 AWQILEELAARLENGRKVLVHCRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 44677888899999999999999999999999999988764 58999986
No 17
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.33 E-value=2.1e-13 Score=150.63 Aligned_cols=141 Identities=18% Similarity=0.311 Sum_probs=110.5
Q ss_pred cccceeeeecCCCC-CCCccccccccCCCcccccCCCCeEEEecCC-------eeEEEeCCCCChhhHHHHHHHHHHHHH
Q 007206 270 NSMLRIYRIAPHSS-YDPLHLVPKLLNYPVAQGFDTRGAFIVLVPS-------AIYVWIGKNCSVMMSNRAREAANQVIR 341 (613)
Q Consensus 270 ss~~RLYRV~g~s~-~~~~~lVpk~ev~~~~sSLnS~dvFIL~t~~-------~IYVW~Gk~ss~~er~~a~~~A~~i~~ 341 (613)
.+.+.+|+++.... ...+.+ ++.+.+..|||-.||||..|. .+|+|.|+.|+. .+.+.|..+..
T Consensus 1038 ~~~pelfq~R~NGsalctR~I----Qin~da~~LnS~FC~iL~vPFe~~~~~gvvy~w~gk~sdp----~e~~~a~d~~~ 1109 (1255)
T KOG0444|consen 1038 GKWPELFQMRANGSALCTRTI----QINCDANQLNSAFCHMLRIPFEEDGHRGVVYVWMGKDSDP----REHEFASDLVV 1109 (1255)
T ss_pred CCCchheeeecCCccceeeeE----EecCcHHHHhhhhHheEecccccCCCceEEEEEeccCCCh----HHHHHHHHhcC
Confidence 45577999987643 344444 999999999999999998774 599999999997 45555544442
Q ss_pred Hh-hcCCceEEecCCCChhhhHHhcCCCccCCCCCcccccCCCcceeEeecCCccE-EEecccCCCcCCCChhhHHhhhc
Q 007206 342 YE-KAQGQITSIKEGEEPLEFWDALVRGQFFADGCNKEEVKNEQVSFSGSNKIATL-MQDGAGEIDEYDLDFELFHKALD 419 (613)
Q Consensus 342 ~e-~~~~~i~vV~EG~Ep~eFW~aLGGk~~y~~~~~~~~~~~~pRLF~cSn~sG~f-v~e~~~~f~Q~DLd~~~~~~~~~ 419 (613)
.. .....+++|.||+|+++||..+||+++|..+.. .....|||+|+|..|+| +.+....|+||||++++++..+.
T Consensus 1110 ~~~d~~~~~~~~~egee~e~fw~~~g~~k~ye~d~~---~~khtrlfrc~nekgyfa~sek~~DfcqDDl~dddim~ldn 1186 (1255)
T KOG0444|consen 1110 RDDDNDFRIVEVQEGEENEEFWKVLGGKKKYETDSS---FVKHTRLFRCTNEKGYFAISEKTVDFCQDDLDDDDIMILDN 1186 (1255)
T ss_pred ccccchhhhhccCCccchHHHhcccCCCCccchhHH---HHHHHHHHhccchhhhhhHhHhhhhhhhccchhhhhhhhcc
Confidence 21 233467889999999999999999999876532 23467999999999999 77788999999999999997765
Q ss_pred CC
Q 007206 420 GG 421 (613)
Q Consensus 420 gg 421 (613)
|-
T Consensus 1187 g~ 1188 (1255)
T KOG0444|consen 1187 GD 1188 (1255)
T ss_pred cc
Confidence 54
No 18
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.32 E-value=1e-12 Score=145.23 Aligned_cols=143 Identities=22% Similarity=0.331 Sum_probs=110.6
Q ss_pred CcccceeeeecCCCCCCCccccccccCCCcccccCCCCeEEEecCCeeEEEeCCCCChhhHHHHHHHHHHHHHHhh-cCC
Q 007206 269 PNSMLRIYRIAPHSSYDPLHLVPKLLNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMMSNRAREAANQVIRYEK-AQG 347 (613)
Q Consensus 269 pss~~RLYRV~g~s~~~~~~lVpk~ev~~~~sSLnS~dvFIL~t~~~IYVW~Gk~ss~~er~~a~~~A~~i~~~e~-~~~ 347 (613)
+.-++|||||.+.... |.---|+++-.||+.|.||+||.|..||||.|-++.-....+|+-.|++|.+.++ +.+
T Consensus 618 ~~h~TRlYrv~~~g~~-----i~lEPVpl~~tSLDPRf~FlLD~G~~IyiW~G~~s~~t~~~KARLfAEkinK~eRKgK~ 692 (1255)
T KOG0444|consen 618 PAHLTRLYRVGVNGTA-----IELEPVPLSVTSLDPRFCFLLDAGETIYIWSGYKSRITVSNKARLFAEKINKRERKGKS 692 (1255)
T ss_pred hHHhhhhheeccccce-----eEeeccCccccccCcceEEEEeCCceEEEEeccchhcccchHHHHHHHHhhhhhccCce
Confidence 3457899999876321 1112356688999999999999999999999999998888999999999998888 678
Q ss_pred ceEEecCCCChhhhHHhcCCCccCCCCC-----cccccCCCcceeEeecCCccE---EEec-c-cCCCcCCCChhhHHh
Q 007206 348 QITSIKEGEEPLEFWDALVRGQFFADGC-----NKEEVKNEQVSFSGSNKIATL---MQDG-A-GEIDEYDLDFELFHK 416 (613)
Q Consensus 348 ~i~vV~EG~Ep~eFW~aLGGk~~y~~~~-----~~~~~~~~pRLF~cSn~sG~f---v~e~-~-~~f~Q~DLd~~~~~~ 416 (613)
+|+...+|+|+.+||++|||.+.-+... ...-...+||||++.-.-|++ +++. + +.++|+.|+..-|+.
T Consensus 693 EI~l~rQg~e~pEFWqaLgg~p~e~~~~ikeHVPEdf~p~qpkLYkV~lGmGyLELPQvel~P~~~l~q~lL~sk~Vyi 771 (1255)
T KOG0444|consen 693 EIELCRQGREPPEFWQALGGNPDEPQGAIKEHVPEDFVPEQPKLYKVNLGMGYLELPQVELLPKGILKQDLLGSKGVYI 771 (1255)
T ss_pred eeehhhhcCCCHHHHHHhCCCCcccccchhhcCCcccCCCCcceEEEccccceeecchhhhchhhHHHHHhhcCCeEEE
Confidence 9999999999999999999976654332 122356789999999999998 2221 2 456777666554443
No 19
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []. It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....
Probab=99.27 E-value=5.1e-12 Score=105.17 Aligned_cols=70 Identities=21% Similarity=0.364 Sum_probs=62.7
Q ss_pred ccCCCcccccCCCCeEEEecCCeeEEEeCCCCChhhHHHHHHHHHHHH-HHhhcCCceEEecCCCChhhhH
Q 007206 293 LLNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMMSNRAREAANQVI-RYEKAQGQITSIKEGEEPLEFW 362 (613)
Q Consensus 293 ~ev~~~~sSLnS~dvFIL~t~~~IYVW~Gk~ss~~er~~a~~~A~~i~-~~e~~~~~i~vV~EG~Ep~eFW 362 (613)
..+..+..+|+++||||||++..||+|+|++++..++..|...|..+. ........+.++.||+|+..||
T Consensus 6 ~~~~~s~~~L~s~~~yIld~~~~i~vW~G~~~~~~e~~~a~~~a~~~~~~~~~~~~~~~~~~eg~E~~~F~ 76 (76)
T PF00626_consen 6 EQVPLSQSSLNSDDCYILDCGYEIFVWVGKKSSPEEKAFAAQLAQELLSEERPPLPEVIRVEEGKEPAEFL 76 (76)
T ss_dssp EEESSSGGGEETTSEEEEEESSEEEEEEHTTSHHHHHHHHHHHHHHHHHHHTTTTSEEEEEETTHHHHHHH
T ss_pred CcCCCCHHHcCCCCEEEEEeCCCcEEEEeccCCHHHHHHHHHHHHHhhhhcCCCCCEEEEecCCCCChHHC
Confidence 367789999999999999999999999999999999999999999888 4334667788889999999998
No 20
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.21 E-value=3.2e-11 Score=116.38 Aligned_cols=117 Identities=14% Similarity=0.169 Sum_probs=75.7
Q ss_pred cccccccCCeEECChhhhcCHHHHHHCCCcEEEEcccCCCCCc-----cCCCcEEEEEEccCCCCC--C-hHHHHHHHHH
Q 007206 121 KECSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCPEY-----FKGDLVYKTLWLQDSPSE--D-ITSILYDVFD 192 (613)
Q Consensus 121 ~~~seI~p~LYLGs~~~A~d~~~Lk~~GIt~VLNl~~~~~p~~-----~~~~i~yl~ipI~D~~~~--~-l~~~~~~av~ 192 (613)
.....|.++||-|+.+.+.+..+|+++||+.||++..+..+.. -..++.+.++++...... . -...+.++++
T Consensus 5 ~nF~~V~~~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~ 84 (164)
T PF03162_consen 5 LNFGMVEPGVYRSAQPTPANFPFLERLGLKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALE 84 (164)
T ss_dssp TT-EEEETTEEEESS--HHHHHHHHHHT-SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHH
T ss_pred ccccCCCCCccCCCCCChhhHHHHHHCCCceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHH
Confidence 4467899999999999999999999999999999987643321 146899999998754331 1 1234455555
Q ss_pred HHHHHHHcCCeEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHH
Q 007206 193 YFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKA 240 (613)
Q Consensus 193 fI~~al~~ggkVLVHC~aGvSRSatVViAYLM~~~g~Sl~eAl~~Vr~ 240 (613)
.|.+. .+.+|||||..|..|+++|+++|- +.+||++..|++..+.
T Consensus 85 ~ild~--~n~PvLiHC~~G~~rTG~vvg~lR-k~Q~W~~~~i~~Ey~~ 129 (164)
T PF03162_consen 85 IILDP--RNYPVLIHCNHGKDRTGLVVGCLR-KLQGWSLSSIFDEYRR 129 (164)
T ss_dssp HHH-G--GG-SEEEE-SSSSSHHHHHHHHHH-HHTTB-HHHHHHHHHH
T ss_pred HHhCC--CCCCEEEEeCCCCcchhhHHHHHH-HHcCCCHHHHHHHHHH
Confidence 54333 458999999999999999999998 7789999999998885
No 21
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.21 E-value=2.1e-10 Score=107.08 Aligned_cols=117 Identities=19% Similarity=0.219 Sum_probs=85.4
Q ss_pred cccccCCeEECChhhhcCHHHHHHCCCcEEEEcccCCC----CCc-------cCCCcEEEEEEccCCCCCChHHHHHHHH
Q 007206 123 CSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVC----PEY-------FKGDLVYKTLWLQDSPSEDITSILYDVF 191 (613)
Q Consensus 123 ~seI~p~LYLGs~~~A~d~~~Lk~~GIt~VLNl~~~~~----p~~-------~~~~i~yl~ipI~D~~~~~l~~~~~~av 191 (613)
+.+|.+.+|+++.....+.+.|+++||+.|||+..... |.. ...++.|+++|+..... +. . .+.
T Consensus 2 ~~~i~~~~~~s~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~~~-~~-~---~v~ 76 (135)
T TIGR01244 2 IRKLTEHLYVSPQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAGDI-TP-D---DVE 76 (135)
T ss_pred ceEcCCCeeEcCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCCCC-CH-H---HHH
Confidence 45799999999999999999999999999999975321 211 12588999999875322 11 1 122
Q ss_pred HHHHHHHHcCCeEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHhcCccc
Q 007206 192 DYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTN 246 (613)
Q Consensus 192 ~fI~~al~~ggkVLVHC~aGvSRSatVViAYLM~~~g~Sl~eAl~~Vr~~Rp~i~ 246 (613)
.|........++||+||++|. |++++.+.++.. .|++.+++++..+..-..+.
T Consensus 77 ~f~~~~~~~~~pvL~HC~sG~-Rt~~l~al~~~~-~g~~~~~i~~~~~~~G~~~~ 129 (135)
T TIGR01244 77 TFRAAIGAAEGPVLAYCRSGT-RSSLLWGFRQAA-EGVPVEEIVRRAQAAGYDLS 129 (135)
T ss_pred HHHHHHHhCCCCEEEEcCCCh-HHHHHHHHHHHH-cCCCHHHHHHHHHHcCCCcc
Confidence 222222234689999999999 998877666655 79999999999988765443
No 22
>KOG0445 consensus Actin regulatory protein supervillin (gelsolin/villin family) [Cytoskeleton]
Probab=99.16 E-value=7.5e-11 Score=130.73 Aligned_cols=150 Identities=22% Similarity=0.284 Sum_probs=118.8
Q ss_pred ccceeeeecCCCCCCCccccccccCCCcccccCCCCeEEEecCC--eeEEEeCCCCChhhHHHHHHHHHHHHHHhh---c
Q 007206 271 SMLRIYRIAPHSSYDPLHLVPKLLNYPVAQGFDTRGAFIVLVPS--AIYVWIGKNCSVMMSNRAREAANQVIRYEK---A 345 (613)
Q Consensus 271 s~~RLYRV~g~s~~~~~~lVpk~ev~~~~sSLnS~dvFIL~t~~--~IYVW~Gk~ss~~er~~a~~~A~~i~~~e~---~ 345 (613)
...|||.|.|..+..+... ++.+..++|.|+-.||+...+ .+|+|+|.++-...+..+..+|+.+.+... .
T Consensus 643 ~~erlY~v~G~vs~Et~l~----Ev~c~~S~LRSr~smv~~~~~~~~~~~whg~k~~~ht~~v~v~aa~~~~~q~pgs~~ 718 (919)
T KOG0445|consen 643 EEERLYCVRGEVSVETNLL----EVACHCSSLRSRTSMVVLNVNKALIYLWHGCKAQAHTKEVGVTAANKIKEQCPGSSS 718 (919)
T ss_pred chhheeeEecccccchhhh----HhhhccccccccceEEEEeccccceEEEecccCCcchhhHhHHHHHHHHHhCCCccc
Confidence 3457999999876655544 899999999999999998765 599999999999999999999988887654 3
Q ss_pred CCceEEecCCCChhhhHHhcCCCccCCCCCcccccCCCcceeEeecCCccEEEecccCCCcCCCChhhHHhhhcCCCCCC
Q 007206 346 QGQITSIKEGEEPLEFWDALVRGQFFADGCNKEEVKNEQVSFSGSNKIATLMQDGAGEIDEYDLDFELFHKALDGGVVPP 425 (613)
Q Consensus 346 ~~~i~vV~EG~Ep~eFW~aLGGk~~y~~~~~~~~~~~~pRLF~cSn~sG~fv~e~~~~f~Q~DLd~~~~~~~~~gg~~p~ 425 (613)
...+++|+||.++..||++||.|. ..+.+|||..|... +.+-..+ ....++|-|..+|.+
T Consensus 719 ~~~~~Eveegs~~~~~~~alGrkd----------f~~~~RlF~~sS~q---a~els~p---~rc~~pFsQ~~Ly~a---- 778 (919)
T KOG0445|consen 719 KVTIHEVEEGSEPLGFWDALGRKD----------FNFAPRLFILSSSQ---ATELSYP---ARCPMPFSQEDLYSA---- 778 (919)
T ss_pred cceeEeecCCCCchhhhhhccccc----------ccccceeeeccchh---hhhccCc---ccCCCcccHHHHhhh----
Confidence 357889999999999999999764 45689999887655 1111111 112277888888887
Q ss_pred eeecCCCcceeecccccchhhhhh
Q 007206 426 FSVSNAGSETCVPARESGWCRLRR 449 (613)
Q Consensus 426 ~~~~~~~~e~~l~~~~~~~~~~~~ 449 (613)
||.|||+|+||=- |..-|+
T Consensus 779 -fLvD~gdelwLW~----w~s~r~ 797 (919)
T KOG0445|consen 779 -FLVDNGDELWLWQ----WASDRK 797 (919)
T ss_pred -eeeccCCeeEeeh----hhhHHH
Confidence 9999999999965 888776
No 23
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=99.12 E-value=6.8e-10 Score=102.48 Aligned_cols=117 Identities=21% Similarity=0.231 Sum_probs=85.7
Q ss_pred CHHHHHHCCCcEEEEcccCCCCC--ccCCCcEEEEEEccCCCCCChHHHHHHHHHHHHHHH--HcCCeEEEEcCCCCchh
Q 007206 140 NRGILRQNGITHVLNCVGFVCPE--YFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVR--EQGGRVFVHCCQGVSRS 215 (613)
Q Consensus 140 d~~~Lk~~GIt~VLNl~~~~~p~--~~~~~i~yl~ipI~D~~~~~l~~~~~~av~fI~~al--~~ggkVLVHC~aGvSRS 215 (613)
-.+.|+++|++.||.+|+..... .-..+|..+..+..|...++ .+..++....+.... ..|..|.|||.+|+||+
T Consensus 33 fieELkKygvttvVRVCe~TYdt~~lek~GI~Vldw~f~dg~ppp-~qvv~~w~~l~~~~f~e~p~~cvavhcvaglgra 111 (173)
T KOG2836|consen 33 FIEELKKYGVTTVVRVCEPTYDTTPLEKEGITVLDWPFDDGAPPP-NQVVDDWLSLVKTKFREEPGCCVAVHCVAGLGRA 111 (173)
T ss_pred HHHHHHhcCCeEEEEecccccCCchhhhcCceEeecccccCCCCc-hHHHHHHHHHHHHHHhhCCCCeEEEEeecccCcc
Confidence 35889999999999998754332 23467888888887764433 345555555444333 34789999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhcCcccCCcchHHHHHHHH
Q 007206 216 TSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQ 259 (613)
Q Consensus 216 atVViAYLM~~~g~Sl~eAl~~Vr~~Rp~i~PN~~F~~QL~~~E 259 (613)
+.+|+.-|+.. ||.+++|+++||++|..+ .|..++..|..|.
T Consensus 112 pvlvalalie~-gmkyedave~ir~krrga-~n~kql~~lekyr 153 (173)
T KOG2836|consen 112 PVLVALALIEA-GMKYEDAVEMIRQKRRGA-INSKQLLYLEKYR 153 (173)
T ss_pred hHHHHHHHHHc-cccHHHHHHHHHHHhhcc-ccHHHHHHHHHhC
Confidence 99998888865 999999999999998875 5655555555553
No 24
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=98.93 E-value=5.6e-09 Score=90.46 Aligned_cols=87 Identities=15% Similarity=0.201 Sum_probs=63.8
Q ss_pred EEEEEEccCCCCCChHHHHHHHHHHHHHHHH---cCCeEEEEcCCCCchhHHHHHHHHHHhc------CCCHHHHHHHHH
Q 007206 169 VYKTLWLQDSPSEDITSILYDVFDYFEDVRE---QGGRVFVHCCQGVSRSTSLVIAYLMWRE------GQSFEDAFQYVK 239 (613)
Q Consensus 169 ~yl~ipI~D~~~~~l~~~~~~av~fI~~al~---~ggkVLVHC~aGvSRSatVViAYLM~~~------g~Sl~eAl~~Vr 239 (613)
.|+...+.|...++....|.+.++.+++... .+++|+|||.+|+|||++++++|+|... -.++.+++..+|
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 83 (105)
T smart00012 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELR 83 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 3455566666555444555566666655554 3689999999999999999999999874 268889999999
Q ss_pred HhcCcccCCcchHHHH
Q 007206 240 AARGVTNPNMGFACQL 255 (613)
Q Consensus 240 ~~Rp~i~PN~~F~~QL 255 (613)
..|+....+..+...+
T Consensus 84 ~~r~~~~~~~~q~~~~ 99 (105)
T smart00012 84 KQRPGMVQTFEQYLFL 99 (105)
T ss_pred hhhhhhCCcHHHHHHH
Confidence 9999876665544443
No 25
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=98.93 E-value=5.6e-09 Score=90.46 Aligned_cols=87 Identities=15% Similarity=0.201 Sum_probs=63.8
Q ss_pred EEEEEEccCCCCCChHHHHHHHHHHHHHHHH---cCCeEEEEcCCCCchhHHHHHHHHHHhc------CCCHHHHHHHHH
Q 007206 169 VYKTLWLQDSPSEDITSILYDVFDYFEDVRE---QGGRVFVHCCQGVSRSTSLVIAYLMWRE------GQSFEDAFQYVK 239 (613)
Q Consensus 169 ~yl~ipI~D~~~~~l~~~~~~av~fI~~al~---~ggkVLVHC~aGvSRSatVViAYLM~~~------g~Sl~eAl~~Vr 239 (613)
.|+...+.|...++....|.+.++.+++... .+++|+|||.+|+|||++++++|+|... -.++.+++..+|
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 83 (105)
T smart00404 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELR 83 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 3455566666555444555566666655554 3689999999999999999999999874 268889999999
Q ss_pred HhcCcccCCcchHHHH
Q 007206 240 AARGVTNPNMGFACQL 255 (613)
Q Consensus 240 ~~Rp~i~PN~~F~~QL 255 (613)
..|+....+..+...+
T Consensus 84 ~~r~~~~~~~~q~~~~ 99 (105)
T smart00404 84 KQRPGMVQTFEQYLFL 99 (105)
T ss_pred hhhhhhCCcHHHHHHH
Confidence 9999876665544443
No 26
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=98.78 E-value=2.3e-08 Score=90.66 Aligned_cols=92 Identities=21% Similarity=0.257 Sum_probs=54.6
Q ss_pred cccccCCeEECChhhhcCHHHHHHCCCcEEEEcccCCC-C---Cc-------cCCCcEEEEEEccCCCCCChHHHHHHHH
Q 007206 123 CSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVC-P---EY-------FKGDLVYKTLWLQDSPSEDITSILYDVF 191 (613)
Q Consensus 123 ~seI~p~LYLGs~~~A~d~~~Lk~~GIt~VLNl~~~~~-p---~~-------~~~~i~yl~ipI~D~~~~~l~~~~~~av 191 (613)
+.+|.+.+|++++....+.+.|++.||++|||+..... + .. ...++.|+++|+.-.. +. ...+.
T Consensus 2 i~~i~~~~~vs~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~---~~--~~~v~ 76 (110)
T PF04273_consen 2 IRQISDDLSVSGQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGA---IT--EEDVE 76 (110)
T ss_dssp -EEEETTEEEECS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT-------HHHHH
T ss_pred CEecCCCeEECCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCC---CC--HHHHH
Confidence 56899999999999999999999999999999974321 1 11 1358899999997432 21 12333
Q ss_pred HHHHHHHHcCCeEEEEcCCCCchhHHHHH
Q 007206 192 DYFEDVREQGGRVFVHCCQGVSRSTSLVI 220 (613)
Q Consensus 192 ~fI~~al~~ggkVLVHC~aGvSRSatVVi 220 (613)
.|.+......++||+||+.|. |+.++.+
T Consensus 77 ~f~~~l~~~~~Pvl~hC~sG~-Ra~~l~~ 104 (110)
T PF04273_consen 77 AFADALESLPKPVLAHCRSGT-RASALWA 104 (110)
T ss_dssp HHHHHHHTTTTSEEEE-SCSH-HHHHHHH
T ss_pred HHHHHHHhCCCCEEEECCCCh-hHHHHHH
Confidence 343333335789999999999 9876544
No 27
>PLN02727 NAD kinase
Probab=98.66 E-value=1e-07 Score=110.98 Aligned_cols=98 Identities=11% Similarity=0.211 Sum_probs=75.4
Q ss_pred CeEECChhhhcCHHHHHHCCCcEEEEcccCCCC--Ccc--------CCCcEEEEEEccCCCCCChHHHHHHHHHHHHHHH
Q 007206 129 HIYLGSDAVAKNRGILRQNGITHVLNCVGFVCP--EYF--------KGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVR 198 (613)
Q Consensus 129 ~LYLGs~~~A~d~~~Lk~~GIt~VLNl~~~~~p--~~~--------~~~i~yl~ipI~D~~~~~l~~~~~~av~fI~~al 198 (613)
.+|.++++.+.+.+.|.++||+.|||+.++... .+. ..++.|+++|+.+...... +.+.++.+++++
T Consensus 262 ~~~rsgQpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~~apt~-EqVe~fa~~l~~-- 338 (986)
T PLN02727 262 AFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVRTAPSA-EQVEKFASLVSD-- 338 (986)
T ss_pred eEEEeCCCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCCCCCCH-HHHHHHHHHHHh--
Confidence 589999999999999999999999999765432 121 2579999999976554333 344444455533
Q ss_pred HcCCeEEEEcCCCCchhHHHHHHHHHHhcCC
Q 007206 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (613)
Q Consensus 199 ~~ggkVLVHC~aGvSRSatVViAYLM~~~g~ 229 (613)
...++||+||+.|..|+++++++||.+..+.
T Consensus 339 slpkPVLvHCKSGarRAGamvA~yl~~~~~~ 369 (986)
T PLN02727 339 SSKKPIYLHSKEGVWRTSAMVSRWKQYMTRS 369 (986)
T ss_pred hcCCCEEEECCCCCchHHHHHHHHHHHHccc
Confidence 3468999999999999999999999987664
No 28
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=98.60 E-value=2.5e-07 Score=87.51 Aligned_cols=113 Identities=19% Similarity=0.190 Sum_probs=81.4
Q ss_pred HHHHHHCCCcEEEEcccCCCCCccCCCc---EEEEEEccCCC------CCChHHHHHHHHHHHHHHHHcCCeEEEEcCCC
Q 007206 141 RGILRQNGITHVLNCVGFVCPEYFKGDL---VYKTLWLQDSP------SEDITSILYDVFDYFEDVREQGGRVFVHCCQG 211 (613)
Q Consensus 141 ~~~Lk~~GIt~VLNl~~~~~p~~~~~~i---~yl~ipI~D~~------~~~l~~~~~~av~fI~~al~~ggkVLVHC~aG 211 (613)
.+...++|-+++|++.........+..+ .++.+-+.|.. ...-..+...+++|+++.-+. ..+||||.+|
T Consensus 25 ae~~~rh~~t~mlsl~a~~t~~~~pa~~~~erhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~-apllIHC~aG 103 (172)
T COG5350 25 AETAARHGPTHMLSLLAKGTYFHRPAVIAAERHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRF-APLLIHCYAG 103 (172)
T ss_pred HHHHhhcCCceEEEeecccccccCccccchhhceeEeeccccCCCccccCCCHHHHHHHHHHHhcCccc-cceeeeeccc
Confidence 4566788999999997532222222222 23444444322 222346788999999888765 8999999999
Q ss_pred CchhHHHH-HHHHHHhcCCCHHHHHHHHHHhcCcccCCcchHHH
Q 007206 212 VSRSTSLV-IAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQ 254 (613)
Q Consensus 212 vSRSatVV-iAYLM~~~g~Sl~eAl~~Vr~~Rp~i~PN~~F~~Q 254 (613)
+|||++++ +|-|.....+.-.++.+.+|..+|.+.||...+.-
T Consensus 104 ISRStA~A~i~a~ala~~~de~ela~~Lra~sp~atPN~RliaI 147 (172)
T COG5350 104 ISRSTAAALIAALALAPDMDETELAERLRALSPYATPNPRLIAI 147 (172)
T ss_pred cccchHHHHHHHHhhccccChHHHHHHHHhcCcccCCChhHHHH
Confidence 99997765 44566777999999999999999999999876544
No 29
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=98.55 E-value=2.7e-07 Score=92.68 Aligned_cols=82 Identities=15% Similarity=0.228 Sum_probs=58.9
Q ss_pred ccCCCCCChHHHHHHHHHHHHHHHH--cCCeEEEEcCCCCchhHHHHHHHHHHhc-----CCCHHHHHHHHHHhcCcccC
Q 007206 175 LQDSPSEDITSILYDVFDYFEDVRE--QGGRVFVHCCQGVSRSTSLVIAYLMWRE-----GQSFEDAFQYVKAARGVTNP 247 (613)
Q Consensus 175 I~D~~~~~l~~~~~~av~fI~~al~--~ggkVLVHC~aGvSRSatVViAYLM~~~-----g~Sl~eAl~~Vr~~Rp~i~P 247 (613)
..|...++-...+.+.++.+++... .+++|+|||.+|+|||+++++++++..+ .+++.+|+..||+.|+.+-.
T Consensus 138 W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~iR~~R~~~v~ 217 (231)
T cd00047 138 WPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKELRSQRPGMVQ 217 (231)
T ss_pred CCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccccC
Confidence 4455444333444444444444432 3689999999999999999999987653 68999999999999998777
Q ss_pred CcchHHHHH
Q 007206 248 NMGFACQLL 256 (613)
Q Consensus 248 N~~F~~QL~ 256 (613)
+..+...+.
T Consensus 218 ~~~Qy~f~~ 226 (231)
T cd00047 218 TEEQYIFLY 226 (231)
T ss_pred CHHHHHHHH
Confidence 765555443
No 30
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=98.46 E-value=5.9e-07 Score=91.89 Aligned_cols=83 Identities=13% Similarity=0.204 Sum_probs=58.6
Q ss_pred EccCCCCCChHHHHHHHHHHHHHHHHc-CCeEEEEcCCCCchhHHHHHHHHHHh-----cCCCHHHHHHHHHHhcCcccC
Q 007206 174 WLQDSPSEDITSILYDVFDYFEDVREQ-GGRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFEDAFQYVKAARGVTNP 247 (613)
Q Consensus 174 pI~D~~~~~l~~~~~~av~fI~~al~~-ggkVLVHC~aGvSRSatVViAYLM~~-----~g~Sl~eAl~~Vr~~Rp~i~P 247 (613)
...|...+.-...+-+.+..++..... +++|+|||.+|+|||++++++++|.. ...++.+++..||..|+.+-.
T Consensus 165 ~W~d~~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~R~~~v~ 244 (258)
T smart00194 165 NWPDHGVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRSQRPGMVQ 244 (258)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHhccccccC
Confidence 344554442223343444444443332 78999999999999999999987754 368999999999999998877
Q ss_pred CcchHHHHH
Q 007206 248 NMGFACQLL 256 (613)
Q Consensus 248 N~~F~~QL~ 256 (613)
+..++..+.
T Consensus 245 ~~~Qy~f~~ 253 (258)
T smart00194 245 TEEQYIFLY 253 (258)
T ss_pred CHHHHHHHH
Confidence 766655543
No 31
>KOG0445 consensus Actin regulatory protein supervillin (gelsolin/villin family) [Cytoskeleton]
Probab=98.34 E-value=7.2e-07 Score=99.80 Aligned_cols=101 Identities=17% Similarity=0.341 Sum_probs=80.6
Q ss_pred CcccceeeeecCCCCCCCccccccccCCCcccccCCCCeEEEecCCeeEEEeCCCCChhhHHHHHHHHHHHHHHhhcCC-
Q 007206 269 PNSMLRIYRIAPHSSYDPLHLVPKLLNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMMSNRAREAANQVIRYEKAQG- 347 (613)
Q Consensus 269 pss~~RLYRV~g~s~~~~~~lVpk~ev~~~~sSLnS~dvFIL~t~~~IYVW~Gk~ss~~er~~a~~~A~~i~~~e~~~~- 347 (613)
|-.-..|.+|+|... |....|+|..++||++|||||..+..+|.|.|..+|..|+.+|.+++..|+.....++
T Consensus 220 Pyk~vMLlqVkGr~h------VqtRLVeP~~ssln~gdCF~lv~~~~lf~yvG~faNviEk~kas~lc~~I~~k~dLgCt 293 (919)
T KOG0445|consen 220 PYKRVMLLQVKGRRH------VQTRLVEPRASSLNSGDCFLLVSPHCLFLYVGEFANVIEKAKASELCTLIQTKRDLGCT 293 (919)
T ss_pred CCCceEEEEEccccc------ceeEEechhhcccccCceEEEechhHHhhhhhHHHHHHHHhHHHHHHHHHhhcccCCce
Confidence 334468999999754 5555889999999999999999999999999999999999999999999986544333
Q ss_pred --ceEEecCCCC----hhhhHHhcCCCccCCCCC
Q 007206 348 --QITSIKEGEE----PLEFWDALVRGQFFADGC 375 (613)
Q Consensus 348 --~i~vV~EG~E----p~eFW~aLGGk~~y~~~~ 375 (613)
.|+.|.+-.- ...||+.|||...|+...
T Consensus 294 At~ivtit~~~~~t~~~~~Fw~llg~qs~~~~~g 327 (919)
T KOG0445|consen 294 ATYIVTITEINTHTHAAKDFWKLLGGQSSYQSAG 327 (919)
T ss_pred eEEEEEEeccchhHHHHHHHHHHhCCccchhhcC
Confidence 4445555321 457999999988887654
No 32
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=98.22 E-value=5.6e-06 Score=79.42 Aligned_cols=107 Identities=18% Similarity=0.272 Sum_probs=53.8
Q ss_pred CeEECChhh---hcCHHHHHHCCCcEEEEcccCC----CCCccCCCcEEEEEEccCCCCCC---hHH----------HH-
Q 007206 129 HIYLGSDAV---AKNRGILRQNGITHVLNCVGFV----CPEYFKGDLVYKTLWLQDSPSED---ITS----------IL- 187 (613)
Q Consensus 129 ~LYLGs~~~---A~d~~~Lk~~GIt~VLNl~~~~----~p~~~~~~i~yl~ipI~D~~~~~---l~~----------~~- 187 (613)
.||-++... ..+.+.|.++||+.||++.... .|.....++.++++|+.+..... +.. .+
T Consensus 20 ~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (164)
T PF13350_consen 20 RLYRSGNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADAPRGML 99 (164)
T ss_dssp SEEEES--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHHHHHHH
T ss_pred cEEecCCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeecccccccccccccccccccccchhhHHH
Confidence 477776444 4577899999999999997532 23345568999999998554331 110 00
Q ss_pred -----------HHHHHHHHHHHHcCCeEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHH
Q 007206 188 -----------YDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQ 236 (613)
Q Consensus 188 -----------~~av~fI~~al~~ggkVLVHC~aGvSRSatVViAYLM~~~g~Sl~eAl~ 236 (613)
+...++++......++|||||.+|..|++.+++. |+...|.+.++.++
T Consensus 100 ~~Y~~~~~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~~al-ll~~lGV~~~~I~~ 158 (164)
T PF13350_consen 100 EFYREMLESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGVVAAL-LLSLLGVPDEDIIA 158 (164)
T ss_dssp HHHHHGGGSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHHHHHH-HHHHTT--HHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHhccCCCcEEEECCCCCccHHHHHHH-HHHHcCCCHHHHHH
Confidence 1111222223334579999999999999765544 45556998877654
No 33
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=98.17 E-value=8.3e-06 Score=90.42 Aligned_cols=91 Identities=18% Similarity=0.184 Sum_probs=65.7
Q ss_pred EEccCCCCCChHHHHHHHHHHHHHHHHcC---------CeEEEEcCCCCchhHHHHHHHHHHhc-CCCHHHHHHHHHHhc
Q 007206 173 LWLQDSPSEDITSILYDVFDYFEDVREQG---------GRVFVHCCQGVSRSTSLVIAYLMWRE-GQSFEDAFQYVKAAR 242 (613)
Q Consensus 173 ipI~D~~~~~l~~~~~~av~fI~~al~~g---------gkVLVHC~aGvSRSatVViAYLM~~~-g~Sl~eAl~~Vr~~R 242 (613)
..++|+...+-...+.+.++.|+.....+ +.++|||.+|+|||++++++|+|... ..++++.+..+|..|
T Consensus 429 TnWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~dlR~qR 508 (535)
T PRK15375 429 KNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRADFRNSR 508 (535)
T ss_pred CCCCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHHHhccccCCHHHHHHHHHhcC
Confidence 34567665443333444555554442221 23479999999999999999999754 478999999999999
Q ss_pred Cc-ccCCcchHHHHHHHHhhhc
Q 007206 243 GV-TNPNMGFACQLLLCQKRVH 263 (613)
Q Consensus 243 p~-i~PN~~F~~QL~~~Ek~l~ 263 (613)
+. +--+..++..|.+.+..+.
T Consensus 509 ng~MVQt~eQy~~l~~~~~~~~ 530 (535)
T PRK15375 509 NNRMLEDASQFVQLKAMQAQLL 530 (535)
T ss_pred CccccccHHHHHHHHHHHHHHh
Confidence 97 7777888888887776653
No 34
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=98.15 E-value=9.2e-06 Score=89.55 Aligned_cols=140 Identities=18% Similarity=0.174 Sum_probs=93.8
Q ss_pred ccccccccCCeEECChhhhcCHHHHHHC--------------CCcEEEEcccCCCCCccCCC--cEEEEEEccCCCCCCh
Q 007206 120 DKECSRIADHIYLGSDAVAKNRGILRQN--------------GITHVLNCVGFVCPEYFKGD--LVYKTLWLQDSPSEDI 183 (613)
Q Consensus 120 ~~~~seI~p~LYLGs~~~A~d~~~Lk~~--------------GIt~VLNl~~~~~p~~~~~~--i~yl~ipI~D~~~~~l 183 (613)
+..++-|+++|..-+.++..... +.++ |==.|.|++++.. |-... -....+++.|+..+.+
T Consensus 12 DLDltYIT~rIIamsfPa~~~es-~yRN~l~dV~~fL~s~H~~~y~vyNL~~er~--yd~~~f~g~V~~~~~~Dh~~P~L 88 (434)
T KOG2283|consen 12 DLDLTYITSRIIAMSFPAEGIES-LYRNNLEDVVLFLDSKHKDHYKVYNLSSERL--YDPSRFHGRVARFGFDDHNPPPL 88 (434)
T ss_pred cccceeeeeeEEEEeCCCCcchh-hhcCCHHHHHHHHhhccCCceEEEecCcccc--CCccccccceeecCCCCCCCCcH
Confidence 44456666666666655543221 2222 2234678775322 11121 2344578888887776
Q ss_pred HHHHHHHHHHHHHHHHc--CCeEEEEcCCCCchhHHHHHHHHHHhcCCC-HHHHHHHHHHhc---C--cccCCcchHHHH
Q 007206 184 TSILYDVFDYFEDVREQ--GGRVFVHCCQGVSRSTSLVIAYLMWREGQS-FEDAFQYVKAAR---G--VTNPNMGFACQL 255 (613)
Q Consensus 184 ~~~~~~av~fI~~al~~--ggkVLVHC~aGvSRSatVViAYLM~~~g~S-l~eAl~~Vr~~R---p--~i~PN~~F~~QL 255 (613)
+.+..+++-++..+.. ...|.|||++|.+|++++++||||+..-.. +++|+++.-.+| . ...--+.+.+.+
T Consensus 89 -~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR~~~~~~~~~~~PSq~RYv 167 (434)
T KOG2283|consen 89 -ELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKRFDEGKSKGVTIPSQRRYV 167 (434)
T ss_pred -HHHHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhhccccccCCccCchhhHHH
Confidence 6677778888887764 478999999999999999999999987655 999999999999 3 122345677888
Q ss_pred HHHHhhhc
Q 007206 256 LLCQKRVH 263 (613)
Q Consensus 256 ~~~Ek~l~ 263 (613)
..|+..+.
T Consensus 168 ~Y~~~~l~ 175 (434)
T KOG2283|consen 168 GYFSRVLL 175 (434)
T ss_pred HHHHHHhh
Confidence 88877443
No 35
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.12 E-value=3.5e-05 Score=70.45 Aligned_cols=112 Identities=18% Similarity=0.200 Sum_probs=77.1
Q ss_pred ccccccCCeEECChhhhcCHHHHHHCCCcEEEEcccCC----CCCc-------cCCCcEEEEEEccCCCCCChHHHHHHH
Q 007206 122 ECSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFV----CPEY-------FKGDLVYKTLWLQDSPSEDITSILYDV 190 (613)
Q Consensus 122 ~~seI~p~LYLGs~~~A~d~~~Lk~~GIt~VLNl~~~~----~p~~-------~~~~i~yl~ipI~D~~~~~l~~~~~~a 190 (613)
.+-+|.+.|+|+++....|...++.+|++.|||-.... .|.. -..++.|.++|+.-..... +.
T Consensus 2 ~i~~I~d~lsVsgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~------~d 75 (130)
T COG3453 2 DIRRINDRLSVSGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGGGITE------AD 75 (130)
T ss_pred CceecccceeecCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCCCCCH------HH
Confidence 36689999999999999999999999999999975321 1111 1247889999997432211 12
Q ss_pred HHHHHHH-HHcCCeEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHh
Q 007206 191 FDYFEDV-REQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAA 241 (613)
Q Consensus 191 v~fI~~a-l~~ggkVLVHC~aGvSRSatVViAYLM~~~g~Sl~eAl~~Vr~~ 241 (613)
++-+.++ -+.+++||.||+.|- ||.++-.--. ...||+.++..++-+.+
T Consensus 76 V~~f~~Al~eaegPVlayCrsGt-Rs~~ly~~~~-~~~gm~~de~~a~g~a~ 125 (130)
T COG3453 76 VEAFQRALDEAEGPVLAYCRSGT-RSLNLYGLGE-LDGGMSRDEIEALGQAA 125 (130)
T ss_pred HHHHHHHHHHhCCCEEeeecCCc-hHHHHHHHHH-HhcCCCHHHHHHHHHhh
Confidence 3333333 346799999999997 8855432222 44689999887766543
No 36
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=98.02 E-value=3.7e-05 Score=85.30 Aligned_cols=135 Identities=18% Similarity=0.214 Sum_probs=97.9
Q ss_pred ccccCCeEECChhhhcC----HHHHHHCCCcEEEEcccCCCC-CccCCCcEEEEEEccCC--CCCChHHHHHHHHHHHHH
Q 007206 124 SRIADHIYLGSDAVAKN----RGILRQNGITHVLNCVGFVCP-EYFKGDLVYKTLWLQDS--PSEDITSILYDVFDYFED 196 (613)
Q Consensus 124 seI~p~LYLGs~~~A~d----~~~Lk~~GIt~VLNl~~~~~p-~~~~~~i~yl~ipI~D~--~~~~l~~~~~~av~fI~~ 196 (613)
..+..+||+|....... ...-....+..||+|...... ........++++++... ...++...|++++.|+..
T Consensus 290 ~~~~~~i~ig~~~~~l~~~~~~~~~~~~~~~~vI~~s~~~~~~~~~~~~~~~L~l~i~~~K~gs~~LR~~LP~i~~fv~~ 369 (451)
T PF04179_consen 290 DPGTTGIYIGKISSNLAISKAQLPDLESEFDCVINCSESPTPKESWPKSPKYLHLPIPSSKKGSRDLRKALPKICSFVRS 369 (451)
T ss_pred ccCCCCeEEeccCCccccchhhccccCCCcCEEEEcCCCcccccccCCCceEEeCcCCCCcccHHHHHHHHHHHHHHHHH
Confidence 34678999998665211 111234578899998754322 33456678899998754 345688899999999999
Q ss_pred HHHc--CCeEEEEcCCCCchhHHHHHHHHHHhcCC--C--------------HHHHHHHHHHhcCcccCCcchHHHHHHH
Q 007206 197 VREQ--GGRVFVHCCQGVSRSTSLVIAYLMWREGQ--S--------------FEDAFQYVKAARGVTNPNMGFACQLLLC 258 (613)
Q Consensus 197 al~~--ggkVLVHC~aGvSRSatVViAYLM~~~g~--S--------------l~eAl~~Vr~~Rp~i~PN~~F~~QL~~~ 258 (613)
.+.+ +++|||+|..|...|++|++|.|++.++. . ..+-+.+|.+.+|.++|..+.+++...|
T Consensus 370 ~L~~~~~~~iLV~C~sGkDlSVgVaLaILc~~Fd~~g~~~~~~~~~~itK~~IR~rL~~I~~~~p~aNPSRaTLqsVNsF 449 (451)
T PF04179_consen 370 HLSSDPGKPILVCCDSGKDLSVGVALAILCKLFDDDGNFRDSFERPSITKDDIRQRLAWIISSRPDANPSRATLQSVNSF 449 (451)
T ss_pred HhcccCCCcEEEEcCCcchHHHHHHHHHHHHhcCcccCcccccccCCCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHh
Confidence 9887 89999999999999999999999998643 1 2233556666677777877777666544
No 37
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=98.01 E-value=4e-05 Score=77.52 Aligned_cols=118 Identities=13% Similarity=0.196 Sum_probs=88.2
Q ss_pred ccccccccCCeEECChhhhcCHHHHHHCCCcEEEEcccCCCCC----cc-CCCcEEEEEEccCC------CCCCh-HHHH
Q 007206 120 DKECSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCPE----YF-KGDLVYKTLWLQDS------PSEDI-TSIL 187 (613)
Q Consensus 120 ~~~~seI~p~LYLGs~~~A~d~~~Lk~~GIt~VLNl~~~~~p~----~~-~~~i~yl~ipI~D~------~~~~l-~~~~ 187 (613)
+...+.+.++||-++++...+..+|+.++++.||.++.+..|+ ++ ..+|.+.++.+.-. +..++ ...+
T Consensus 57 PlnFs~V~~~lyRSg~P~~~NfsFL~~L~LksIisL~pE~yp~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P~~~~~~~~i 136 (249)
T KOG1572|consen 57 PLNFSMVDNGLYRSGFPRPENFSFLKTLHLKSIISLCPEPYPEENLNFLESNGIKLYQIGIEGEKDNKKEPFVNIPDHSI 136 (249)
T ss_pred CccccccccceeecCCCCccchHHHHHhhhheEEEecCCCCChHHHHHHHhcCceEEEEecccccccccCCCCCChHHHH
Confidence 3446678889999999999999999999999999998765443 22 35789999988632 22333 2335
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHH
Q 007206 188 YDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKA 240 (613)
Q Consensus 188 ~~av~fI~~al~~ggkVLVHC~aGvSRSatVViAYLM~~~g~Sl~eAl~~Vr~ 240 (613)
..+++++- .+.+.++||||..|..|++++|.+.- +.++|++.-.++.-+.
T Consensus 137 ~~~l~~ll--d~~N~P~Lihc~rGkhRtg~lVgclR-klq~W~lssil~Ey~~ 186 (249)
T KOG1572|consen 137 RKALKVLL--DKRNYPILIHCKRGKHRTGCLVGCLR-KLQNWSLSSILDEYLR 186 (249)
T ss_pred HHHHHHHh--cccCCceEEecCCCCcchhhhHHHHH-HHhccchhHHHHHHHH
Confidence 55555532 24578999999999999999887765 7779998877765543
No 38
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=97.93 E-value=4.4e-05 Score=75.74 Aligned_cols=69 Identities=16% Similarity=0.244 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHH----cCCeEEEEcCCCCchhHHHHHHHHHHh-----cCCCHHHHHHHHHHhcCcccCCcchHHHHH
Q 007206 188 YDVFDYFEDVRE----QGGRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFEDAFQYVKAARGVTNPNMGFACQLL 256 (613)
Q Consensus 188 ~~av~fI~~al~----~ggkVLVHC~aGvSRSatVViAYLM~~-----~g~Sl~eAl~~Vr~~Rp~i~PN~~F~~QL~ 256 (613)
..++++++...+ .+++|+|||..|+|||++++++.+|.. ...+..+++..+|+.|+.+-.+..++..+.
T Consensus 153 ~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~i~~~~qy~f~~ 230 (235)
T PF00102_consen 153 ESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQRPGAIQSPEQYRFCY 230 (235)
T ss_dssp HHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTTSTTSSSSHHHHHHHH
T ss_pred chhhhhhhhccccccCCccceEeecccccccccccccchhhccccccccchhhHHHHHHHHhhCCCccCCHHHHHHHH
Confidence 344555555443 359999999999999999999988764 247999999999999998877766655443
No 39
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=97.74 E-value=5.7e-05 Score=71.91 Aligned_cols=59 Identities=17% Similarity=0.376 Sum_probs=44.2
Q ss_pred CCCcEEEEEEccCCCCCChHHHHHHHHHHHHHHHHcCCeEEEEcCCCCchhHHHHHHHHHH
Q 007206 165 KGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMW 225 (613)
Q Consensus 165 ~~~i~yl~ipI~D~~~~~l~~~~~~av~fI~~al~~ggkVLVHC~aGvSRSatVViAYLM~ 225 (613)
..++.|++||+.|...+. ...|++.++++... .++.-+.+||.+|.||+.+.++.|.|.
T Consensus 90 ~~g~~Y~Ripitd~~~P~-~~~iD~fi~~v~~~-p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 90 GNGLRYYRIPITDHQAPD-PEDIDAFINFVKSL-PKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp HTT-EEEEEEE-TTS----HHHHHHHHHHHHTS--TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCCcCCCC-HHHHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999986544 57888888988888 668999999999999999988888774
No 40
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=97.72 E-value=0.00016 Score=76.52 Aligned_cols=51 Identities=12% Similarity=0.129 Sum_probs=41.4
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHh-----cCCCHHHHHHHHHHhcCcccCCcch
Q 007206 201 GGRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFEDAFQYVKAARGVTNPNMGF 251 (613)
Q Consensus 201 ggkVLVHC~aGvSRSatVViAYLM~~-----~g~Sl~eAl~~Vr~~Rp~i~PN~~F 251 (613)
.++|+|||.+|+||||++++...+.. ...+..+++..+|+.|+..-.+..+
T Consensus 229 ~~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v~v~~~V~~lR~qR~~~Vqt~~Q 284 (303)
T PHA02742 229 EPPILVHCSAGLDRAGAFCAIDICISKYNERAIIPLLSIVRDLRKQRHNCLSLPQQ 284 (303)
T ss_pred CCCeEEECCCCCchhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccccCCHHH
Confidence 37999999999999999988776553 2568889999999999976665443
No 41
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=97.68 E-value=0.00017 Score=76.69 Aligned_cols=54 Identities=13% Similarity=0.214 Sum_probs=43.9
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHHh-----cCCCHHHHHHHHHHhcCcccCCcchHHHH
Q 007206 202 GRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFEDAFQYVKAARGVTNPNMGFACQL 255 (613)
Q Consensus 202 gkVLVHC~aGvSRSatVViAYLM~~-----~g~Sl~eAl~~Vr~~Rp~i~PN~~F~~QL 255 (613)
++|+|||.+|+|||+++++..++.. ...+..+++..+|..|+..-.+..+...+
T Consensus 230 ~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v~v~~~V~~lR~qR~~~Vqt~~QY~F~ 288 (312)
T PHA02747 230 CPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAICLAKTAEKIREQRHAGIMNFDDYLFI 288 (312)
T ss_pred CCEEEEecCCCcchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccccCCHHHHHHH
Confidence 7999999999999999998875443 36889999999999999877765544443
No 42
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=97.65 E-value=0.00022 Score=76.14 Aligned_cols=52 Identities=13% Similarity=0.198 Sum_probs=42.3
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHHh-----cCCCHHHHHHHHHHhcCcccCCcchHH
Q 007206 202 GRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFEDAFQYVKAARGVTNPNMGFAC 253 (613)
Q Consensus 202 gkVLVHC~aGvSRSatVViAYLM~~-----~g~Sl~eAl~~Vr~~Rp~i~PN~~F~~ 253 (613)
++|+|||.+|+||||++++...+.. ...+..+++..+|..|+..-.+..+..
T Consensus 248 ~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~vdv~~~V~~lR~qR~~~Vqt~~QY~ 304 (323)
T PHA02746 248 GPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVCLGEIVLKIRKQRHSSVFLPEQYA 304 (323)
T ss_pred CCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhcccccCCCHHHHH
Confidence 7999999999999999998765432 358999999999999998766654433
No 43
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=97.57 E-value=0.00035 Score=73.86 Aligned_cols=51 Identities=14% Similarity=0.151 Sum_probs=41.9
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHh-----cCCCHHHHHHHHHHhcCcccCCcch
Q 007206 201 GGRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFEDAFQYVKAARGVTNPNMGF 251 (613)
Q Consensus 201 ggkVLVHC~aGvSRSatVViAYLM~~-----~g~Sl~eAl~~Vr~~Rp~i~PN~~F 251 (613)
.++|+|||.+|+|||+++++...+.. ...+..+++..+|..|+..-.+..+
T Consensus 221 ~~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vdi~~~V~~lR~qR~~~Vqt~~Q 276 (298)
T PHA02740 221 IAPIIIDCIDGISSSAVFCVFDICATEFDKTGMLSIANALKKVRQKKYGCMNCLDD 276 (298)
T ss_pred CCCEEEECCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHHHHHhhCccccCCHHH
Confidence 47999999999999999998776543 3578999999999999976665443
No 44
>PHA02738 hypothetical protein; Provisional
Probab=97.51 E-value=0.00043 Score=73.83 Aligned_cols=52 Identities=13% Similarity=0.102 Sum_probs=41.4
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHh-----cCCCHHHHHHHHHHhcCcccCCcchH
Q 007206 201 GGRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFEDAFQYVKAARGVTNPNMGFA 252 (613)
Q Consensus 201 ggkVLVHC~aGvSRSatVViAYLM~~-----~g~Sl~eAl~~Vr~~Rp~i~PN~~F~ 252 (613)
.++|+|||.+|+|||+++++...+.. ...+..+++..+|..|+..-.+..+.
T Consensus 227 ~~PIVVHCs~GiGRtGtFcaidi~i~~~~~~~~vdv~~~V~~lR~qR~~~vqt~~QY 283 (320)
T PHA02738 227 PPPIVVHCNAGLGRTPCYCVVDISISRFDACATVSIPSIVSSIRNQRYYSLFIPFQY 283 (320)
T ss_pred CCCeEEEcCCCCChhhhhhHHHHHHHHHHhcCCcCHHHHHHHHHhhhhhccCCHHHH
Confidence 36899999999999999887664432 35789999999999999776665444
No 45
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=97.39 E-value=0.00025 Score=73.14 Aligned_cols=121 Identities=15% Similarity=0.157 Sum_probs=71.0
Q ss_pred CeEECChhhhcCHH--HHHHCCCcEEEEcccCCC--CCccCCCc----EEEEEEccCCCCCC-hHHHHHHHHHHHHHHHH
Q 007206 129 HIYLGSDAVAKNRG--ILRQNGITHVLNCVGFVC--PEYFKGDL----VYKTLWLQDSPSED-ITSILYDVFDYFEDVRE 199 (613)
Q Consensus 129 ~LYLGs~~~A~d~~--~Lk~~GIt~VLNl~~~~~--p~~~~~~i----~yl~ipI~D~~~~~-l~~~~~~av~fI~~al~ 199 (613)
.+|.++.+...+.. ....++|..++++.++.. -..+.... ....+...+..... -....+....++.-.+.
T Consensus 54 ~~~Rs~~p~~~~~~~~~~~~~~l~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~ 133 (249)
T COG2365 54 IDYRSGQPVPVQPDPELLDALYLKTIINLRDESNTNVELYTDHLINWDKAAIIMFESYRSFPTREDAAERLVELLQLLAD 133 (249)
T ss_pred eEcCCCCcccccCCccccccccccccccccccchhhhhhhhhhhhhhccccchhhhhhccCccchhhHHHHHHHHHHHhh
Confidence 45666666555444 667777888888764110 00111110 11111111111111 11223344455555555
Q ss_pred cC-CeEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHhcCcccCCc
Q 007206 200 QG-GRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNM 249 (613)
Q Consensus 200 ~g-gkVLVHC~aGvSRSatVViAYLM~~~g~Sl~eAl~~Vr~~Rp~i~PN~ 249 (613)
.+ ++||+||.+|..|++.+++.|++...++.-..+-++++..++......
T Consensus 134 ~e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~~~~~ 184 (249)
T COG2365 134 AENGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEPERR 184 (249)
T ss_pred cccCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccchhhH
Confidence 54 999999999999999999999999977777788888888777654433
No 46
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=97.21 E-value=0.001 Score=78.69 Aligned_cols=80 Identities=18% Similarity=0.249 Sum_probs=59.2
Q ss_pred ccCCCCCChHHHHHHHHHHHHHHHHc-CCeEEEEcCCCCchhHHHHHHHHHHh-----cCCCHHHHHHHHHHhcCcccCC
Q 007206 175 LQDSPSEDITSILYDVFDYFEDVREQ-GGRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFEDAFQYVKAARGVTNPN 248 (613)
Q Consensus 175 I~D~~~~~l~~~~~~av~fI~~al~~-ggkVLVHC~aGvSRSatVViAYLM~~-----~g~Sl~eAl~~Vr~~Rp~i~PN 248 (613)
+.|++.++-...|-+-++.|..+++. +-+|+|||.+|+|||++++++-+|.. ..+..-+.++.+|..|-.+.++
T Consensus 1036 WPDHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~QR~~mVQT 1115 (1144)
T KOG0792|consen 1036 WPDHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRDQRAMMVQT 1115 (1144)
T ss_pred cccCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhccc
Confidence 45666655556666666666666665 66999999999999999886655443 3678889999999999988777
Q ss_pred cchHHH
Q 007206 249 MGFACQ 254 (613)
Q Consensus 249 ~~F~~Q 254 (613)
..++..
T Consensus 1116 ~~QYkF 1121 (1144)
T KOG0792|consen 1116 LSQYKF 1121 (1144)
T ss_pred hHHhhH
Confidence 665443
No 47
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=97.09 E-value=0.00095 Score=72.57 Aligned_cols=114 Identities=18% Similarity=0.237 Sum_probs=76.9
Q ss_pred CcEEEEcccCC----CCCccCCCcEEEEEEccCC---CCCChHH-HHHHHHHHHHHHHHcCCeEEEEcCCCCchhHHHHH
Q 007206 149 ITHVLNCVGFV----CPEYFKGDLVYKTLWLQDS---PSEDITS-ILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVI 220 (613)
Q Consensus 149 It~VLNl~~~~----~p~~~~~~i~yl~ipI~D~---~~~~l~~-~~~~av~fI~~al~~ggkVLVHC~aGvSRSatVVi 220 (613)
|.-+++++... .+.....++.|+.+...-. +...... ....+-+|+.+....+.=|+|||.+|.+|++-++.
T Consensus 64 vgl~iDltnt~ryy~~~~~~~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~~~~~~~~LI~vhcthG~NrtgyLI~ 143 (393)
T KOG2386|consen 64 VGLKIDLTNTLRYYDKPELEERGVKYLKRNCPGRGVVPRTELVDKFVKLVKGFVDDTKLDDELIGVHCTHGLNRTGYLIC 143 (393)
T ss_pred EEEEEeccceeeeeccccccccceeEEEeccCCcccCCCccchHHHHHHHHHHHhcccCCCCEEEEeCCCcccccceeee
Confidence 45566654311 1223344666666654322 2222223 34445556666777889999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHhcCcccCCcchHHHHHHHHhhh
Q 007206 221 AYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRV 262 (613)
Q Consensus 221 AYLM~~~g~Sl~eAl~~Vr~~Rp~i~PN~~F~~QL~~~Ek~l 262 (613)
+|||...+|+..+|++.+...|+-..-....+..|...+...
T Consensus 144 ~yL~~~~~~s~~~aik~f~~~r~~gi~k~dyi~~L~~~~~~~ 185 (393)
T KOG2386|consen 144 AYLADVGGYSSSEAIKRFADARPPGIEKQDYIDALYSRYHDI 185 (393)
T ss_pred eeeeeccCccHHHHHHHHHHhCCCccCchHHHHHHhhccccc
Confidence 999999999999999999999985444455556665554443
No 48
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=96.85 E-value=0.0015 Score=71.17 Aligned_cols=109 Identities=21% Similarity=0.328 Sum_probs=65.5
Q ss_pred CHHHHHHCCCcEEEEcccCCCCCcc----------C-----CCcEEEEEEccCCCCCChHHHHHHHHHHHHHH------H
Q 007206 140 NRGILRQNGITHVLNCVGFVCPEYF----------K-----GDLVYKTLWLQDSPSEDITSILYDVFDYFEDV------R 198 (613)
Q Consensus 140 d~~~Lk~~GIt~VLNl~~~~~p~~~----------~-----~~i~yl~ipI~D~~~~~l~~~~~~av~fI~~a------l 198 (613)
+...++.+|+-.|-|+.+.....|. . .-+.|+.+-+.|++-+.-. .-+++|+++. +
T Consensus 372 ee~~~e~~G~~~v~~v~E~~t~dY~LR~l~vs~~~~g~~~R~I~~yh~~tWPDHGvP~dP---g~vLnFLe~V~~rq~~l 448 (600)
T KOG0790|consen 372 EEGALEEYGVMRVRNVKESDTHDYTLRELKVSKLGNGNLEREIWHYHYLTWPDHGVPSDP---GGVLNFLEEVNHRQESL 448 (600)
T ss_pred cccchhhcCceEEEeccccccccceehheeeccccCCcchhhhhhhheeecccCCCcCCc---cHHHHHHHHhhhhhccc
Confidence 3445677788887776432211111 1 1134555566676532210 1244555443 2
Q ss_pred HcCCeEEEEcCCCCchhHHHH-HHHHHH---hc----CCCHHHHHHHHHHhcCcccCCcch
Q 007206 199 EQGGRVFVHCCQGVSRSTSLV-IAYLMW---RE----GQSFEDAFQYVKAARGVTNPNMGF 251 (613)
Q Consensus 199 ~~ggkVLVHC~aGvSRSatVV-iAYLM~---~~----g~Sl~eAl~~Vr~~Rp~i~PN~~F 251 (613)
-.-|+|.|||.|||||+++++ |-.||- +. .++....+++||+.|....-...+
T Consensus 449 ~~AgpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~ktIqmVRsqRSGmVQTEaQ 509 (600)
T KOG0790|consen 449 MDAGPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKTIQMVRSQRSGMVQTEAQ 509 (600)
T ss_pred cccCcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHHHHHHHHHhcchhhhHHh
Confidence 345799999999999999975 444443 22 478899999999999865444443
No 49
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=96.69 E-value=0.004 Score=64.30 Aligned_cols=74 Identities=18% Similarity=0.280 Sum_probs=45.0
Q ss_pred ccCCCCCChHHHHHHHHHHHHHHH---HcCCeEEEEcCCCCchhHHHHHHHHHHh-cCCC-------------HHHHHHH
Q 007206 175 LQDSPSEDITSILYDVFDYFEDVR---EQGGRVFVHCCQGVSRSTSLVIAYLMWR-EGQS-------------FEDAFQY 237 (613)
Q Consensus 175 I~D~~~~~l~~~~~~av~fI~~al---~~ggkVLVHC~aGvSRSatVViAYLM~~-~g~S-------------l~eAl~~ 237 (613)
..|....++. +..++++-.. -++++++|||.||+||+||+++.-.+.. ..-+ ..+.+..
T Consensus 193 W~D~~~p~i~----sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~~~~~~~~~t~~~~~t~D~if~iV~~ 268 (302)
T COG5599 193 WVDFNVPDIR----SLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLRMPNDTLNHTDTWEDTQDLIFQIVLS 268 (302)
T ss_pred ccccCCcCHH----HHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHhccccccCCCchhhhhhhHHHHHHHH
Confidence 4576666553 3445554443 3579999999999999999987764443 2211 1234555
Q ss_pred HHHhcCcccCCcchH
Q 007206 238 VKAARGVTNPNMGFA 252 (613)
Q Consensus 238 Vr~~Rp~i~PN~~F~ 252 (613)
+|++|-..--|..+.
T Consensus 269 LRsQRmkmVQn~~Qf 283 (302)
T COG5599 269 LRSQRMKMVQNKTQF 283 (302)
T ss_pred HHHHHHHHHHhHHHH
Confidence 666666544443333
No 50
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=96.44 E-value=0.0095 Score=64.82 Aligned_cols=53 Identities=15% Similarity=0.220 Sum_probs=39.9
Q ss_pred cCCeEEEEcCCCCchhHHHHHHH-HHHh--c---CCCHHHHHHHHHHhcCcccCCcchH
Q 007206 200 QGGRVFVHCCQGVSRSTSLVIAY-LMWR--E---GQSFEDAFQYVKAARGVTNPNMGFA 252 (613)
Q Consensus 200 ~ggkVLVHC~aGvSRSatVViAY-LM~~--~---g~Sl~eAl~~Vr~~Rp~i~PN~~F~ 252 (613)
..+++.|||.+|+||++++++.. .|.. . .....+.+..+|..|+.+..+..+.
T Consensus 298 ~~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~iR~qR~~~vqt~~Qy 356 (415)
T KOG0789|consen 298 KQEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREIRYQRPGAVQSPLQY 356 (415)
T ss_pred CCCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhcccchhHH
Confidence 45899999999999999999655 3332 1 2448888889999999776655544
No 51
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=95.46 E-value=0.053 Score=58.43 Aligned_cols=60 Identities=18% Similarity=0.236 Sum_probs=45.3
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHh-cC----CCHHHHHHHHHHhcCcccCCcchHHHHHHHHh
Q 007206 201 GGRVFVHCCQGVSRSTSLVIAYLMWR-EG----QSFEDAFQYVKAARGVTNPNMGFACQLLLCQK 260 (613)
Q Consensus 201 ggkVLVHC~aGvSRSatVViAYLM~~-~g----~Sl~eAl~~Vr~~Rp~i~PN~~F~~QL~~~Ek 260 (613)
.+.++|||.+|+||++|+.+.--+.. .+ .+.-..+..+|..|+...++..++-.|.++-.
T Consensus 287 ~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv~~lR~~R~~mVqte~Qyvfl~~c~~ 351 (374)
T KOG0791|consen 287 KGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVVLELRSARMLMVQTEDQYVFLHQCVL 351 (374)
T ss_pred CCceeEEeecccccccchHhHHHHHHHhcccccccHHHHHHHhhhccccccchHHHHHHHHHHHH
Confidence 68999999999999999987764443 23 34556666777888888888888777766543
No 52
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=94.86 E-value=0.11 Score=59.81 Aligned_cols=61 Identities=13% Similarity=0.297 Sum_probs=43.7
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHh------cCCCHHHHHHHHHHhcCcc-cCCcchHHHHHHHHhh
Q 007206 201 GGRVFVHCCQGVSRSTSLVIAYLMWR------EGQSFEDAFQYVKAARGVT-NPNMGFACQLLLCQKR 261 (613)
Q Consensus 201 ggkVLVHC~aGvSRSatVViAYLM~~------~g~Sl~eAl~~Vr~~Rp~i-~PN~~F~~QL~~~Ek~ 261 (613)
...|+|||..|-||+++-++-=|+.. ..++....++++|..|+.+ .-...|.-.|...-.+
T Consensus 927 ScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEHlRDQR~GmVaTkdQFef~l~aVAeE 994 (1004)
T KOG0793|consen 927 SCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEHLRDQRPGMVATKDQFEFALTAVAEE 994 (1004)
T ss_pred CCceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHHHHhhcCCcceeehhhhHHHHHHHHHH
Confidence 57899999999999998654433322 2467888899999999954 4455666666654443
No 53
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=94.59 E-value=0.11 Score=62.63 Aligned_cols=8 Identities=38% Similarity=0.426 Sum_probs=3.3
Q ss_pred ChhhHHhh
Q 007206 410 DFELFHKA 417 (613)
Q Consensus 410 d~~~~~~~ 417 (613)
|.+.+...
T Consensus 1419 d~e~l~~~ 1426 (1605)
T KOG0260|consen 1419 DAEKLKKG 1426 (1605)
T ss_pred cHHhhhcc
Confidence 44444433
No 54
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.45 E-value=0.12 Score=60.81 Aligned_cols=56 Identities=16% Similarity=0.288 Sum_probs=39.6
Q ss_pred ceeeeecCCCCCCCccccccccCCCcccccCCCCeEEEecCCeeEEEeCCCCChhh
Q 007206 273 LRIYRIAPHSSYDPLHLVPKLLNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMM 328 (613)
Q Consensus 273 ~RLYRV~g~s~~~~~~lVpk~ev~~~~sSLnS~dvFIL~t~~~IYVW~Gk~ss~~e 328 (613)
+||+-++.-...+....+...-|.++...|+.++||+|+.+.++|+|+|..++...
T Consensus 859 Prl~p~hdl~i~dtl~~~~p~~VraS~e~l~negiYll~nG~~~ylwvg~sv~~~l 914 (1007)
T KOG1984|consen 859 PRLLPFHDLDIEDTLEFVLPKAVRASSEFLSNEGIYLLDNGQKIYLWVGESVDPDL 914 (1007)
T ss_pred cceeeeeccccccccccccccceecchhhccCCceEEEecCcEEEEEecCCCCHHH
Confidence 34555544333333322222356778899999999999999999999999998744
No 55
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=94.30 E-value=0.23 Score=47.23 Aligned_cols=101 Identities=22% Similarity=0.288 Sum_probs=54.2
Q ss_pred ccCCeEECChhhhcCHHHHHHCCCcEEEEcccCCCCCccCCCcEEEEEEccCCCCCChHHHHHHHHHHHHHHHHc---CC
Q 007206 126 IADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCPEYFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQ---GG 202 (613)
Q Consensus 126 I~p~LYLGs~~~A~d~~~Lk~~GIt~VLNl~~~~~p~~~~~~i~yl~ipI~D~~~~~l~~~~~~av~fI~~al~~---gg 202 (613)
|.+.||.+..... -+...=+|-+++-+ .+.|..+ -.|.+.-++ .++..-+..+++.++. .+
T Consensus 4 i~drLyf~~~~~~-----p~~~~~~~yF~iD~---------~l~Y~~F-~~DFGPlnL-~~lyrfc~~l~~~L~~~~~~~ 67 (141)
T PF14671_consen 4 IPDRLYFASLRNK-----PKSTPNTHYFSIDD---------ELVYENF-YADFGPLNL-AQLYRFCCKLNKKLKSPELKK 67 (141)
T ss_dssp SSSSEEEEE-SS---------BTTEEEEE-TT---------TS----S-SS------H-HHHHHHHHHHHHHHH-GGGTT
T ss_pred CCCcEEEEEeCCC-----CCCCCCcEEEEeCC---------eEEEecc-cCcCCCccH-HHHHHHHHHHHHHHcCHHhcC
Confidence 6678888875542 12223345555321 2334333 356777777 4455555666666654 68
Q ss_pred eEEEEcCCCCc--h--hHHHHHHHHHHhcCCCHHHHHHHHHHhc
Q 007206 203 RVFVHCCQGVS--R--STSLVIAYLMWREGQSFEDAFQYVKAAR 242 (613)
Q Consensus 203 kVLVHC~aGvS--R--SatVViAYLM~~~g~Sl~eAl~~Vr~~R 242 (613)
+.+|||...-. | ++.++.||+|..+||++++|++-+...-
T Consensus 68 k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~~ 111 (141)
T PF14671_consen 68 KKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLASIQ 111 (141)
T ss_dssp SEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTTTT
T ss_pred CeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcC
Confidence 88899877544 3 4778899999999999999999998764
No 56
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Probab=90.70 E-value=0.51 Score=55.16 Aligned_cols=33 Identities=15% Similarity=0.487 Sum_probs=29.4
Q ss_pred CcccccCCCCeEEEecCCeeEEEeCCCCChhhH
Q 007206 297 PVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMMS 329 (613)
Q Consensus 297 ~~~sSLnS~dvFIL~t~~~IYVW~Gk~ss~~er 329 (613)
.+.+.|+++++|+|+++.+||+|+|+.+.....
T Consensus 738 aT~s~le~~GlYLidtg~~iflw~g~d~~p~Ll 770 (861)
T COG5028 738 ATSSLLESGGLYLIDTGQKIFLWFGKDAVPSLL 770 (861)
T ss_pred hhHHHHhcCCeEEEEcCCEEEEEecCCCCHHHH
Confidence 467889999999999999999999999997443
No 57
>PTZ00395 Sec24-related protein; Provisional
Probab=89.54 E-value=1.4 Score=54.81 Aligned_cols=35 Identities=11% Similarity=0.237 Sum_probs=30.7
Q ss_pred cCCCcccccCCCCeEEEecCCeeEEEeCCCCChhh
Q 007206 294 LNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMM 328 (613)
Q Consensus 294 ev~~~~sSLnS~dvFIL~t~~~IYVW~Gk~ss~~e 328 (613)
.+..+...|.++++|||+.+..||+|+|+.++...
T Consensus 1433 ~LrLS~ErLesdGIYLLDNGe~IyLWVG~~V~PqL 1467 (1560)
T PTZ00395 1433 TIPSSAEKIYSNGIYLLDACTHFYLYFGFHSDANF 1467 (1560)
T ss_pred cccchHHHhcCCcEEEEECCCEEEEEECCCCCHHH
Confidence 45567888999999999999999999999998643
No 58
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=88.23 E-value=0.69 Score=56.16 Aligned_cols=57 Identities=18% Similarity=0.370 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHc----CCeEEEEcCCCCchhHHHHHHHHH-----HhcCCCHHHHHHHHHHhcCcc
Q 007206 189 DVFDYFEDVREQ----GGRVFVHCCQGVSRSTSLVIAYLM-----WREGQSFEDAFQYVKAARGVT 245 (613)
Q Consensus 189 ~av~fI~~al~~----ggkVLVHC~aGvSRSatVViAYLM-----~~~g~Sl~eAl~~Vr~~Rp~i 245 (613)
..+.|+.+...- .|+++|||.+|+||+++.++-=-| .....+.-.-...+|.+|...
T Consensus 714 ~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~e~~vdiy~~v~~lR~QR~~m 779 (1087)
T KOG4228|consen 714 GLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIVIDAMLDRLECEGKVDIYGHVKTLRRQRNNM 779 (1087)
T ss_pred HHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEEeHHHHHHHHhhCccceechhHHHHhccccc
Confidence 356777776653 499999999999999996533222 223455555566666666643
No 59
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.72 E-value=2.8 Score=48.05 Aligned_cols=40 Identities=30% Similarity=0.533 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcCCCCchhHHHH-HHHHHHh
Q 007206 187 LYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLV-IAYLMWR 226 (613)
Q Consensus 187 ~~~av~fI~~al~~ggkVLVHC~aGvSRSatVV-iAYLM~~ 226 (613)
|..|+...++....+..|||||..|-.|++-++ +|-||..
T Consensus 360 Laga~~Ia~kVe~~~~sVlVHCSDGWDRT~QlvsLA~LlLD 400 (717)
T KOG4471|consen 360 LAGAVRIADKVESESRSVLVHCSDGWDRTAQLVSLAMLLLD 400 (717)
T ss_pred HHHHHHHHHHHhcCCceEEEEcCCCccchHHHHHHHHHHhc
Confidence 444555555556678999999999999998776 5556643
No 60
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=82.71 E-value=2.1 Score=52.20 Aligned_cols=45 Identities=20% Similarity=0.362 Sum_probs=34.4
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHh----c-CCCHHHHHHHHHHhcCcc
Q 007206 201 GGRVFVHCCQGVSRSTSLVIAYLMWR----E-GQSFEDAFQYVKAARGVT 245 (613)
Q Consensus 201 ggkVLVHC~aGvSRSatVViAYLM~~----~-g~Sl~eAl~~Vr~~Rp~i 245 (613)
.+++.|||.+|.+|+++++++-++.. . -++.=+|.+.+|..||.+
T Consensus 1018 ~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~~vDVfq~vk~Lr~~rp~m 1067 (1087)
T KOG4228|consen 1018 DGPIIVHCLNGVGRTGTFCAISILLERMRKEGVVDVFQTVKTLRFQRPGM 1067 (1087)
T ss_pred CCCEEEEEcCCCcceeehHHHHHHHHHHhhcCceeeehhhhhhhhcCccc
Confidence 59999999999999998886654443 2 356667777888888754
No 61
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.09 E-value=2.4 Score=50.23 Aligned_cols=30 Identities=20% Similarity=0.584 Sum_probs=27.9
Q ss_pred CcccccCCCCeEEEecCCeeEEEeCCCCCh
Q 007206 297 PVAQGFDTRGAFIVLVPSAIYVWIGKNCSV 326 (613)
Q Consensus 297 ~~~sSLnS~dvFIL~t~~~IYVW~Gk~ss~ 326 (613)
.+...|.+++.|++|++..+|+|+|+.|..
T Consensus 765 ltae~l~~~GlyL~D~g~~lfl~vg~~a~P 794 (887)
T KOG1985|consen 765 LTAELLSRRGLYLMDTGTTLFLWVGSNADP 794 (887)
T ss_pred hHHHHhccCceEEEecCcEEEEEEcCCCCc
Confidence 467889999999999999999999999996
No 62
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=69.62 E-value=13 Score=32.25 Aligned_cols=29 Identities=31% Similarity=0.562 Sum_probs=19.5
Q ss_pred HcCCeEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 007206 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (613)
Q Consensus 199 ~~ggkVLVHC~aGvSRSatVViAYLM~~~g~S 230 (613)
.++++|+|+|..|. ||... +.+| ...|.+
T Consensus 59 ~~~~~ivvyC~~G~-rs~~a-~~~L-~~~G~~ 87 (101)
T cd01518 59 LKGKKVLMYCTGGI-RCEKA-SAYL-KERGFK 87 (101)
T ss_pred cCCCEEEEECCCch-hHHHH-HHHH-HHhCCc
Confidence 46789999999884 88643 3344 455654
No 63
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=66.52 E-value=11 Score=40.96 Aligned_cols=21 Identities=38% Similarity=0.855 Sum_probs=16.5
Q ss_pred HcCCeEEEEcCCCCchhHHHH
Q 007206 199 EQGGRVFVHCCQGVSRSTSLV 219 (613)
Q Consensus 199 ~~ggkVLVHC~aGvSRSatVV 219 (613)
.+|..|||||..|-.|++-++
T Consensus 229 ~~~~~Vlvh~~dGwDrt~q~~ 249 (353)
T PF06602_consen 229 DEGSSVLVHCSDGWDRTSQLS 249 (353)
T ss_dssp TT--EEEEECTTSSSHHHHHH
T ss_pred ccCceEEEEcCCCCcccHHHH
Confidence 578999999999999996554
No 64
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=66.21 E-value=12 Score=32.26 Aligned_cols=69 Identities=20% Similarity=0.174 Sum_probs=38.3
Q ss_pred HHHHCCCcEEEEcccCCCCCccC-CCcE-EEEEEccCCCCCChHHHHHHHHHHHHHHHHcCCeEEEEcCCCCchhHHHHH
Q 007206 143 ILRQNGITHVLNCVGFVCPEYFK-GDLV-YKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVI 220 (613)
Q Consensus 143 ~Lk~~GIt~VLNl~~~~~p~~~~-~~i~-yl~ipI~D~~~~~l~~~~~~av~fI~~al~~ggkVLVHC~aGvSRSatVVi 220 (613)
.+...+-..||++... .++.. .-.. ..++|+.+...... ... ..++++|+|+|..|. || ..++
T Consensus 14 ~~~~~~~~~liDvR~~--~e~~~~~i~~~~~~ip~~~~~~~~~---------~~~--~~~~~~ivv~C~~G~-rS-~~aa 78 (110)
T COG0607 14 LLLAGEDAVLLDVREP--EEYERGHIPGAAINIPLSELKAAEN---------LLE--LPDDDPIVVYCASGV-RS-AAAA 78 (110)
T ss_pred HhhccCCCEEEeccCh--hHhhhcCCCcceeeeecccchhhhc---------ccc--cCCCCeEEEEeCCCC-Ch-HHHH
Confidence 3445556788887643 22221 1112 55666655432110 000 567899999999998 77 4455
Q ss_pred HHHHHh
Q 007206 221 AYLMWR 226 (613)
Q Consensus 221 AYLM~~ 226 (613)
.+|...
T Consensus 79 ~~L~~~ 84 (110)
T COG0607 79 AALKLA 84 (110)
T ss_pred HHHHHc
Confidence 555544
No 65
>PLN00162 transport protein sec23; Provisional
Probab=64.27 E-value=21 Score=42.85 Aligned_cols=70 Identities=7% Similarity=0.040 Sum_probs=46.0
Q ss_pred CCCcccccCCCCeEEEecCCeeEEEeCCCCCh-----------hh-----HHHHHHHHHHHHHHhhcCCceEEecCCCCh
Q 007206 295 NYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSV-----------MM-----SNRAREAANQVIRYEKAQGQITSIKEGEEP 358 (613)
Q Consensus 295 v~~~~sSLnS~dvFIL~t~~~IYVW~Gk~ss~-----------~e-----r~~a~~~A~~i~~~e~~~~~i~vV~EG~Ep 358 (613)
+.....+|.++.+|+||++..|+||+|..... .+ .+..++-|+.|....-+...+++.++|.-.
T Consensus 635 v~Ld~~si~~d~ilLLD~~f~vvi~~G~~ia~w~~~~~~~~~~~~~~~~~l~~p~~~a~~~~~~Rfp~Pr~i~~~~~~Sq 714 (761)
T PLN00162 635 VLLDVASIAADRILLLDSYFSVVIFHGSTIAQWRKAGYHNQPEHEAFAQLLEAPQADAQAIIKERFPVPRLVVCDQHGSQ 714 (761)
T ss_pred eecchhhccCCceEEEeCCCEEEEEecCcccchhhcCCCCCcchhhHHHHHHhHHHHHHHHHhcCCCCCeEEEeCCCCcH
Confidence 44577889999999999999999999952211 11 122233455555432255677888988876
Q ss_pred hhhHHh
Q 007206 359 LEFWDA 364 (613)
Q Consensus 359 ~eFW~a 364 (613)
+-|.-+
T Consensus 715 aRfl~~ 720 (761)
T PLN00162 715 ARFLLA 720 (761)
T ss_pred HHHHHH
Confidence 666444
No 66
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=62.30 E-value=22 Score=41.07 Aligned_cols=37 Identities=24% Similarity=0.458 Sum_probs=26.3
Q ss_pred HHHHHHHHHH-cCCeEEEEcCCCCchhHHHH-HHHHHHh
Q 007206 190 VFDYFEDVRE-QGGRVFVHCCQGVSRSTSLV-IAYLMWR 226 (613)
Q Consensus 190 av~fI~~al~-~ggkVLVHC~aGvSRSatVV-iAYLM~~ 226 (613)
+..+|.+++. +|..|||||..|..|+.-|+ +|=||..
T Consensus 332 ~a~~ia~~l~~~~~sVlvhcsdGwDrT~qV~SLaQllLD 370 (573)
T KOG1089|consen 332 AAAEIAKCLSSEGASVLVHCSDGWDRTCQVSSLAQLLLD 370 (573)
T ss_pred HHHHHHHHHHhCCCeEEEEccCCcchhHHHHHHHHHHhC
Confidence 3344555665 66999999999999997766 4445543
No 67
>PLN02160 thiosulfate sulfurtransferase
Probab=59.04 E-value=13 Score=34.66 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=20.3
Q ss_pred HHcCCeEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 007206 198 REQGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (613)
Q Consensus 198 l~~ggkVLVHC~aGvSRSatVViAYLM~~~g~S 230 (613)
+..+.+|+|||..|. ||... +.++...|++
T Consensus 78 ~~~~~~IivyC~sG~-RS~~A--a~~L~~~G~~ 107 (136)
T PLN02160 78 LNPADDILVGCQSGA-RSLKA--TTELVAAGYK 107 (136)
T ss_pred cCCCCcEEEECCCcH-HHHHH--HHHHHHcCCC
Confidence 356789999999995 88654 3333455654
No 68
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=54.28 E-value=23 Score=31.07 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=18.3
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHhcCC
Q 007206 200 QGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (613)
Q Consensus 200 ~ggkVLVHC~aGvSRSatVViAYLM~~~g~ 229 (613)
++.+|+|||..|. ||.. + +.+++..|+
T Consensus 65 ~~~~ivv~C~~G~-rs~~-a-~~~L~~~G~ 91 (109)
T cd01533 65 PRTPIVVNCAGRT-RSII-G-AQSLINAGL 91 (109)
T ss_pred CCCeEEEECCCCc-hHHH-H-HHHHHHCCC
Confidence 4679999999997 7733 3 334455565
No 69
>PRK01415 hypothetical protein; Validated
Probab=51.09 E-value=33 Score=35.75 Aligned_cols=29 Identities=21% Similarity=0.398 Sum_probs=20.3
Q ss_pred HcCCeEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 007206 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (613)
Q Consensus 199 ~~ggkVLVHC~aGvSRSatVViAYLM~~~g~S 230 (613)
.++++|+++|+.|+ || ..++++|. .+|..
T Consensus 169 ~k~k~Iv~yCtgGi-Rs-~kAa~~L~-~~Gf~ 197 (247)
T PRK01415 169 LKGKKIAMVCTGGI-RC-EKSTSLLK-SIGYD 197 (247)
T ss_pred cCCCeEEEECCCCh-HH-HHHHHHHH-HcCCC
Confidence 46789999999997 87 44556654 34554
No 70
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=47.87 E-value=1.9e+02 Score=31.60 Aligned_cols=63 Identities=13% Similarity=0.200 Sum_probs=36.7
Q ss_pred cCCCCeEEEecCC------eeEEEeCCCCChhhHHHHHHHHHHHHHHhhcCCceEEecCCC------ChhhhHHhcC
Q 007206 302 FDTRGAFIVLVPS------AIYVWIGKNCSVMMSNRAREAANQVIRYEKAQGQITSIKEGE------EPLEFWDALV 366 (613)
Q Consensus 302 LnS~dvFIL~t~~------~IYVW~Gk~ss~~er~~a~~~A~~i~~~e~~~~~i~vV~EG~------Ep~eFW~aLG 366 (613)
|...+.-|||... ..|.+.|- .....+..+..++..+.+... ...|.+=.|+. =|+.||+++-
T Consensus 161 L~~~~~~vlDlE~~aehrGS~fG~~~~-~qpsQ~~Fe~~l~~~l~~~~~-~~~i~vE~Es~~IG~~~lP~~l~~~m~ 235 (345)
T PRK11784 161 LANAGAQVLDLEGLANHRGSSFGRLGG-PQPSQKDFENLLAEALLKLDP-ARPIVVEDESRRIGRVHLPEALYEAMQ 235 (345)
T ss_pred HHhcCCeEEECCchhhhccccccCCCC-CCcchHHHHHHHHHHHHcCCC-CCeEEEEeccccccCccCCHHHHHHHh
Confidence 3333555777543 47777777 333445666667766665433 33444444544 2889999985
No 71
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=45.81 E-value=71 Score=27.28 Aligned_cols=82 Identities=15% Similarity=0.182 Sum_probs=41.0
Q ss_pred HCCCcEEEEcccCCCCCccCCCc-EEEEEEccCC---CCCChHHHHHHHHHHHHHHHHcCCeEEEEcCCCCchhHHHHH-
Q 007206 146 QNGITHVLNCVGFVCPEYFKGDL-VYKTLWLQDS---PSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVI- 220 (613)
Q Consensus 146 ~~GIt~VLNl~~~~~p~~~~~~i-~yl~ipI~D~---~~~~l~~~~~~av~fI~~al~~ggkVLVHC~aGvSRSatVVi- 220 (613)
..+=..||+|.... ++....| .-.++|+... ........+............++..|+|+|..|. |+...+.
T Consensus 10 ~~~~~~liD~R~~~--~~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~-~~~~~~~~ 86 (113)
T PF00581_consen 10 ENESVLLIDVRSPE--EYERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGW-RSGSAAAA 86 (113)
T ss_dssp TTTTEEEEEESSHH--HHHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSC-HHHHHHHH
T ss_pred hCCCeEEEEeCCHH--HHHcCCCCCCccccccccccccccccccccccccccccccccccccceeeeeccc-ccchhHHH
Confidence 44566788875321 1111111 1256666432 2222233344444444444456789999997666 4433333
Q ss_pred --HHHHHhcCCC
Q 007206 221 --AYLMWREGQS 230 (613)
Q Consensus 221 --AYLM~~~g~S 230 (613)
+|++...|++
T Consensus 87 ~~~~~l~~~g~~ 98 (113)
T PF00581_consen 87 RVAWILKKLGFK 98 (113)
T ss_dssp HHHHHHHHTTTS
T ss_pred HHHHHHHHcCCC
Confidence 3445555654
No 72
>smart00400 ZnF_CHCC zinc finger.
Probab=44.11 E-value=25 Score=27.70 Aligned_cols=32 Identities=31% Similarity=0.554 Sum_probs=24.7
Q ss_pred EEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHH
Q 007206 205 FVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYV 238 (613)
Q Consensus 205 LVHC~aGvSRSatVViAYLM~~~g~Sl~eAl~~V 238 (613)
..||.+ -++.+- +|.++|+.+|+++.+|++.+
T Consensus 23 ~~~Cf~-cg~gGd-~i~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 23 FFHCFG-CGAGGN-VISFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred EEEEeC-CCCCCC-HHHHHHHHHCcCHHHHHHHh
Confidence 478874 345554 58888999999999999876
No 73
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=42.95 E-value=38 Score=30.19 Aligned_cols=30 Identities=17% Similarity=-0.040 Sum_probs=20.1
Q ss_pred HcCCeEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 007206 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (613)
Q Consensus 199 ~~ggkVLVHC~aGvSRSatVViAYLM~~~g~S 230 (613)
..+.+|+|+|..| ++.++.++.+| ...|+.
T Consensus 77 ~~~~~vv~~c~~g-~~~a~~~~~~l-~~~G~~ 106 (122)
T cd01448 77 SNDDTVVVYDDGG-GFFAARAWWTL-RYFGHE 106 (122)
T ss_pred CCCCEEEEECCCC-CccHHHHHHHH-HHcCCC
Confidence 4578999999998 55555554444 444654
No 74
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=42.94 E-value=49 Score=28.49 Aligned_cols=28 Identities=29% Similarity=0.557 Sum_probs=18.5
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 007206 200 QGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (613)
Q Consensus 200 ~ggkVLVHC~aGvSRSatVViAYLM~~~g~S 230 (613)
++.+|+|+|..|. ||... +.+|. +.|.+
T Consensus 57 ~~~~vv~~c~~g~-rs~~~-~~~l~-~~G~~ 84 (101)
T cd01528 57 PDKDIVVLCHHGG-RSMQV-AQWLL-RQGFE 84 (101)
T ss_pred CCCeEEEEeCCCc-hHHHH-HHHHH-HcCCc
Confidence 4789999999984 77443 33343 45654
No 75
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=42.01 E-value=39 Score=26.76 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHh
Q 007206 216 TSLVIAYLMWREGQSFEDAFQYVKAA 241 (613)
Q Consensus 216 atVViAYLM~~~g~Sl~eAl~~Vr~~ 241 (613)
..-+.+.||..+|++.++|+++++..
T Consensus 15 I~~AkgiLm~~~g~~e~~A~~~Lr~~ 40 (56)
T PF03861_consen 15 IEQAKGILMARYGLSEDEAYRLLRRQ 40 (56)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 45577889999999999999999865
No 76
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=41.93 E-value=31 Score=29.66 Aligned_cols=29 Identities=21% Similarity=0.219 Sum_probs=19.1
Q ss_pred HcCCeEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 007206 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (613)
Q Consensus 199 ~~ggkVLVHC~aGvSRSatVViAYLM~~~g~S 230 (613)
..+++|+|+|..|. ||.. ++.. +...|++
T Consensus 59 ~~~~~ivv~C~~G~-rs~~-aa~~-L~~~G~~ 87 (100)
T cd01523 59 PDDQEVTVICAKEG-SSQF-VAEL-LAERGYD 87 (100)
T ss_pred CCCCeEEEEcCCCC-cHHH-HHHH-HHHcCce
Confidence 46789999999996 7743 3333 3445653
No 77
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=39.96 E-value=57 Score=32.67 Aligned_cols=39 Identities=8% Similarity=0.100 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEEcCCCCchhHHHHHHHHH
Q 007206 183 ITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLM 224 (613)
Q Consensus 183 l~~~~~~av~fI~~al~~ggkVLVHC~aGvSRSatVViAYLM 224 (613)
+.+.+.++++.|.+++.++++|+|. |.|+|++++..+-+
T Consensus 23 ~~~~i~~a~~~l~~~l~~~~rI~~~---G~GgSa~~A~~~a~ 61 (196)
T PRK10886 23 LPDAISRAAMTLVQSLLNGNKILCC---GNGTSAANAQHFAA 61 (196)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEEEE---ECcHHHHHHHHHHH
Confidence 3466788889999999999999886 89999887655544
No 78
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=39.90 E-value=41 Score=28.66 Aligned_cols=30 Identities=13% Similarity=0.001 Sum_probs=18.5
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 007206 200 QGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (613)
Q Consensus 200 ~ggkVLVHC~aGvSRSatVViAYLM~~~g~S 230 (613)
+..+|+|+|..|...++..+ +..+...|.+
T Consensus 49 ~~~~ivl~c~~G~~~~s~~a-a~~L~~~G~~ 78 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRA-ARRLSELGYT 78 (92)
T ss_pred CCCeEEEEeCCCCchHHHHH-HHHHHHcCcc
Confidence 36799999999864333444 4444444543
No 79
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=39.23 E-value=48 Score=35.61 Aligned_cols=28 Identities=25% Similarity=0.495 Sum_probs=20.0
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 007206 200 QGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (613)
Q Consensus 200 ~ggkVLVHC~aGvSRSatVViAYLM~~~g~S 230 (613)
++++|+|||..|+ ||. .+++||.. .|.+
T Consensus 170 kdk~IvvyC~~G~-Rs~-~aa~~L~~-~Gf~ 197 (314)
T PRK00142 170 KDKKVVMYCTGGI-RCE-KASAWMKH-EGFK 197 (314)
T ss_pred CcCeEEEECCCCc-HHH-HHHHHHHH-cCCC
Confidence 5689999999997 884 45556554 4654
No 80
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=38.82 E-value=51 Score=30.06 Aligned_cols=30 Identities=30% Similarity=0.521 Sum_probs=20.9
Q ss_pred HHcCCeEEEEcCCCCchhHHHHHHHHHHhcCC
Q 007206 198 REQGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (613)
Q Consensus 198 l~~ggkVLVHC~aGvSRSatVViAYLM~~~g~ 229 (613)
+.++.+|+|+|..|-.||.. +++++...|.
T Consensus 83 i~~~~~vvvyC~~~G~rs~~--a~~~L~~~G~ 112 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQS--LAWLLESLGI 112 (128)
T ss_pred cCCCCeEEEEeCCCCccHHH--HHHHHHHcCC
Confidence 45678999999855457764 3377776676
No 81
>PRK05320 rhodanese superfamily protein; Provisional
Probab=38.72 E-value=53 Score=34.22 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=19.8
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 007206 200 QGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (613)
Q Consensus 200 ~ggkVLVHC~aGvSRSatVViAYLM~~~g~S 230 (613)
++++|+++|..|+ ||.. ++++|.. .|++
T Consensus 174 kdk~IvvyC~~G~-Rs~~-Aa~~L~~-~Gf~ 201 (257)
T PRK05320 174 AGKTVVSFCTGGI-RCEK-AAIHMQE-VGID 201 (257)
T ss_pred CCCeEEEECCCCH-HHHH-HHHHHHH-cCCc
Confidence 5789999999996 7744 5566653 3543
No 82
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=38.48 E-value=35 Score=32.90 Aligned_cols=30 Identities=17% Similarity=0.073 Sum_probs=22.1
Q ss_pred HcCCeEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 007206 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (613)
Q Consensus 199 ~~ggkVLVHC~aGvSRSatVViAYLM~~~g~S 230 (613)
.++.+|+|+|..|..||.. +++++...|.+
T Consensus 114 ~~d~~IVvYC~~G~~~S~~--aa~~L~~~G~~ 143 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWN--AAKRALAYGYS 143 (162)
T ss_pred CCCCEEEEEECCCCHHHHH--HHHHHHhcCCc
Confidence 3678999999998877765 45666666654
No 83
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=34.26 E-value=49 Score=28.24 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=18.5
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 007206 200 QGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (613)
Q Consensus 200 ~ggkVLVHC~aGvSRSatVViAYLM~~~g~S 230 (613)
++.+|+|+|..|. ||.. ++.+| ...|.+
T Consensus 55 ~~~~iv~~c~~G~-rs~~-aa~~L-~~~G~~ 82 (95)
T cd01534 55 RGARIVLADDDGV-RADM-TASWL-AQMGWE 82 (95)
T ss_pred CCCeEEEECCCCC-hHHH-HHHHH-HHcCCE
Confidence 4679999999987 7643 33344 555653
No 84
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=32.25 E-value=61 Score=29.09 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=19.3
Q ss_pred HcCCeEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 007206 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (613)
Q Consensus 199 ~~ggkVLVHC~aGvSRSatVViAYLM~~~g~S 230 (613)
..+.+|+|+|..|. ||..+ |.++...|..
T Consensus 62 ~~~~~ivv~C~~G~-rs~~a--a~~L~~~G~~ 90 (117)
T cd01522 62 GKDRPVLLLCRSGN-RSIAA--AEAAAQAGFT 90 (117)
T ss_pred CCCCeEEEEcCCCc-cHHHH--HHHHHHCCCC
Confidence 56789999999985 77654 3333445553
No 85
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=30.99 E-value=60 Score=30.71 Aligned_cols=26 Identities=23% Similarity=0.324 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEEcCC
Q 007206 185 SILYDVFDYFEDVREQGGRVFVHCCQ 210 (613)
Q Consensus 185 ~~~~~av~fI~~al~~ggkVLVHC~a 210 (613)
..+.-++..++++.++|.+|+|+|..
T Consensus 13 ~~~~~~c~L~~ka~~~g~rv~I~~~d 38 (142)
T PRK05728 13 ALEALLCELAEKALRAGWRVLVQCED 38 (142)
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 34667899999999999999999953
No 86
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=30.83 E-value=58 Score=34.66 Aligned_cols=17 Identities=24% Similarity=0.552 Sum_probs=15.3
Q ss_pred eEEEEcCCCCchhHHHH
Q 007206 203 RVFVHCCQGVSRSTSLV 219 (613)
Q Consensus 203 kVLVHC~aGvSRSatVV 219 (613)
.|-|=|+.|..||++++
T Consensus 244 tIaiGCTGG~HRSV~ia 260 (284)
T PF03668_consen 244 TIAIGCTGGQHRSVAIA 260 (284)
T ss_pred EEEEEcCCCcCcHHHHH
Confidence 68889999999999877
No 87
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=30.82 E-value=53 Score=29.00 Aligned_cols=38 Identities=26% Similarity=0.527 Sum_probs=26.1
Q ss_pred EEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHhcCc
Q 007206 205 FVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGV 244 (613)
Q Consensus 205 LVHC~aGvSRSatVViAYLM~~~g~Sl~eAl~~Vr~~Rp~ 244 (613)
..||.+ -+..+- ++.++|..+++++.+|++++.+.-.+
T Consensus 54 ~~~Cf~-Cg~~Gd-~i~~v~~~~~~~f~eAv~~l~~~~~i 91 (97)
T PF01807_consen 54 RFKCFG-CGKGGD-VIDFVMKYEGCSFKEAVKWLAEEFGI 91 (97)
T ss_dssp EEEETT-T--EE--HHHHHHHHHT--HHHHHHHHHHHHT-
T ss_pred eEEECC-CCCCCc-HHhHHHHHhCCCHHHHHHHHHHHhCC
Confidence 689984 456654 58888999999999999999876443
No 88
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=29.53 E-value=51 Score=31.69 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHcCCeEEEEcC
Q 007206 189 DVFDYFEDVREQGGRVFVHCC 209 (613)
Q Consensus 189 ~av~fI~~al~~ggkVLVHC~ 209 (613)
.++.+++++...|.+|||+|.
T Consensus 17 ~~c~L~~k~~~~G~rvlI~~~ 37 (144)
T COG2927 17 AACRLAEKAWRSGWRVLIQCE 37 (144)
T ss_pred HHHHHHHHHHHcCCeEEEEeC
Confidence 688999999999999999995
No 89
>PRK13938 phosphoheptose isomerase; Provisional
Probab=28.25 E-value=1.2e+02 Score=30.23 Aligned_cols=43 Identities=16% Similarity=0.082 Sum_probs=32.7
Q ss_pred CChHHHHHHHHHHHHHHHHcCCeEEEEcCCCCchhHHHHHHHHHHh
Q 007206 181 EDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWR 226 (613)
Q Consensus 181 ~~l~~~~~~av~fI~~al~~ggkVLVHC~aGvSRSatVViAYLM~~ 226 (613)
..+.+.+.++.+.+.+++++|++|+|. |+|+|+.++..+-++.
T Consensus 25 ~~~~~~~~~~a~~~~~~l~~g~rI~i~---G~G~S~~~A~~fa~~L 67 (196)
T PRK13938 25 RVLLEAARAIGDRLIAGYRAGARVFMC---GNGGSAADAQHFAAEL 67 (196)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHHHHHHHHc
Confidence 455667888888888899999999886 8888877775554443
No 90
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=27.22 E-value=1.3e+02 Score=30.34 Aligned_cols=50 Identities=24% Similarity=0.341 Sum_probs=34.9
Q ss_pred CCCChHHHHHHHHHHHHHHHH----cCCeEEEEcCCCCchhHHHHHHHHHHhcCCCHHHH
Q 007206 179 PSEDITSILYDVFDYFEDVRE----QGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDA 234 (613)
Q Consensus 179 ~~~~l~~~~~~av~fI~~al~----~ggkVLVHC~aGvSRSatVViAYLM~~~g~Sl~eA 234 (613)
..+++......+..++++.+. .+++|||-|++|+-|+ +++|++ |+++++.
T Consensus 148 gGEs~~~~~~Rv~~~l~~~i~~~~~~~~~vlvVsHg~vir~---ll~~~~---~~~~~~~ 201 (228)
T PRK14116 148 GGENLKVTLERVIPFWEDHIAPDLLDGKNVIIAAHGNSLRA---LTKYIE---NISDEDI 201 (228)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhhcCCCeEEEEcChHHHHH---HHHHHh---CCCHHHH
Confidence 356677777888888877542 4689999999998775 334443 6676643
No 91
>KOG0235 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=26.92 E-value=2.1e+02 Score=29.35 Aligned_cols=52 Identities=17% Similarity=0.227 Sum_probs=35.8
Q ss_pred CCCChHHHHHHHHHHHHHHH----HcCCeEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHH
Q 007206 179 PSEDITSILYDVFDYFEDVR----EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQ 236 (613)
Q Consensus 179 ~~~~l~~~~~~av~fI~~al----~~ggkVLVHC~aGvSRSatVViAYLM~~~g~Sl~eAl~ 236 (613)
..+.+...+..++.|+++.+ ..|+.|+|+|+.. ..=|++|+..|.+.++.+.
T Consensus 130 ~~EsL~~~~~R~~~~~~e~i~~~~~~gk~Vli~aHGn------sLR~i~~~l~g~s~~~i~~ 185 (214)
T KOG0235|consen 130 DGESLKDCLDRLLPFWNEEIAKESKEGKNVLIVAHGN------SLRAIVKHLEGISDEAIKE 185 (214)
T ss_pred CCccHHHHHHHHHHHHHHhhhhhhcCCcEEEEEcCcH------HHHHHHHHHhcCCHhhhhh
Confidence 45667777888888887654 4689999999862 2345667777777655443
No 92
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=26.85 E-value=78 Score=27.17 Aligned_cols=29 Identities=28% Similarity=0.359 Sum_probs=19.9
Q ss_pred HcCCeEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 007206 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (613)
Q Consensus 199 ~~ggkVLVHC~aGvSRSatVViAYLM~~~g~S 230 (613)
.++.+|+|+|..|. ||.. +++++...|+.
T Consensus 64 ~~~~~ivv~c~~g~-~s~~--~~~~l~~~G~~ 92 (106)
T cd01519 64 SKDKELIFYCKAGV-RSKA--AAELARSLGYE 92 (106)
T ss_pred CCCCeEEEECCCcH-HHHH--HHHHHHHcCCc
Confidence 35789999999986 6533 35555666753
No 93
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=26.38 E-value=69 Score=30.07 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcCC
Q 007206 187 LYDVFDYFEDVREQGGRVFVHCCQ 210 (613)
Q Consensus 187 ~~~av~fI~~al~~ggkVLVHC~a 210 (613)
...++..++++.++|++|+|+|..
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d 38 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPD 38 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SS
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCC
Confidence 456889999999999999999953
No 94
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=26.11 E-value=71 Score=33.94 Aligned_cols=35 Identities=23% Similarity=0.346 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHH----HcC---CeEEEEcCCCCchhHHHH
Q 007206 185 SILYDVFDYFEDVR----EQG---GRVFVHCCQGVSRSTSLV 219 (613)
Q Consensus 185 ~~~~~av~fI~~al----~~g---gkVLVHC~aGvSRSatVV 219 (613)
..+..+.++++.++ ++| -.|-|=|+.|..||++++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~igCtGG~HRSV~~~ 263 (288)
T PRK05416 222 EFLDKIRDLLEFWLPGYEREGKSYLTIAIGCTGGQHRSVAIA 263 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEEecCCCcccHHHHH
Confidence 34555555555433 333 237889999999999876
No 95
>PHA02540 61 DNA primase; Provisional
Probab=26.07 E-value=91 Score=34.04 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=31.2
Q ss_pred CeEEEEcCC-CCchhHHHHHHHHHHhcCCCHHHHHHHHHHhcC
Q 007206 202 GRVFVHCCQ-GVSRSTSLVIAYLMWREGQSFEDAFQYVKAARG 243 (613)
Q Consensus 202 gkVLVHC~a-GvSRSatVViAYLM~~~g~Sl~eAl~~Vr~~Rp 243 (613)
+....||.. |.+.. ++.|||...++++.||++.+.+...
T Consensus 52 ~~~~yhCFgCGa~Gd---~i~Flme~e~lsf~Eav~~la~~~g 91 (337)
T PHA02540 52 DGGVFKCHNCGYHRP---FGNFLKDYEPDLYREYIMERFKERG 91 (337)
T ss_pred CceEEEecCCCCCCC---HHHHHHHhcCCChHHHHHHHHHHhC
Confidence 367899964 66654 7899999999999999997766554
No 96
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=25.77 E-value=83 Score=30.44 Aligned_cols=26 Identities=8% Similarity=0.061 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEEcCC
Q 007206 185 SILYDVFDYFEDVREQGGRVFVHCCQ 210 (613)
Q Consensus 185 ~~~~~av~fI~~al~~ggkVLVHC~a 210 (613)
..+.-++..++++.++|.+|+|+|..
T Consensus 13 ~~~~~acrL~~Ka~~~G~rv~I~~~d 38 (154)
T PRK06646 13 LLLKSILLLIEKCYYSDLKSVILTAD 38 (154)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 45667899999999999999999954
No 97
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=25.35 E-value=1.7e+02 Score=25.82 Aligned_cols=19 Identities=11% Similarity=0.076 Sum_probs=14.1
Q ss_pred cCCeEEEEcCCCCchhHHH
Q 007206 200 QGGRVFVHCCQGVSRSTSL 218 (613)
Q Consensus 200 ~ggkVLVHC~aGvSRSatV 218 (613)
....|+|||..|-.||+.+
T Consensus 65 ~~~~iv~~C~~~g~rs~~a 83 (113)
T cd01443 65 GVKLAIFYCGSSQGRGPRA 83 (113)
T ss_pred CCCEEEEECCCCCcccHHH
Confidence 3578999999866677543
No 98
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=24.93 E-value=76 Score=26.97 Aligned_cols=29 Identities=17% Similarity=0.179 Sum_probs=19.4
Q ss_pred HHcCCeEEEEcCCCCchhHHHHHHHHHHhcCC
Q 007206 198 REQGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (613)
Q Consensus 198 l~~ggkVLVHC~aGvSRSatVViAYLM~~~g~ 229 (613)
+..+.+|+|+|..|. ||.. ++.++...|+
T Consensus 58 ~~~~~~ivv~c~~g~-~s~~--~~~~l~~~G~ 86 (103)
T cd01447 58 FAEDKPFVFYCASGW-RSAL--AGKTLQDMGL 86 (103)
T ss_pred CCCCCeEEEEcCCCC-cHHH--HHHHHHHcCh
Confidence 356789999998874 7643 3455555554
No 99
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=24.84 E-value=91 Score=26.75 Aligned_cols=26 Identities=12% Similarity=0.165 Sum_probs=17.5
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHhcCC
Q 007206 201 GGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (613)
Q Consensus 201 ggkVLVHC~aGvSRSatVViAYLM~~~g~ 229 (613)
+..|+|+|..|. ||..+ |+.+...|.
T Consensus 65 ~~~vv~~c~~g~-~s~~~--a~~L~~~G~ 90 (105)
T cd01525 65 GKIIVIVSHSHK-HAALF--AAFLVKCGV 90 (105)
T ss_pred CCeEEEEeCCCc-cHHHH--HHHHHHcCC
Confidence 678999999987 66443 334445565
No 100
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=23.97 E-value=87 Score=26.65 Aligned_cols=29 Identities=14% Similarity=0.148 Sum_probs=18.9
Q ss_pred HcCCeEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 007206 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (613)
Q Consensus 199 ~~ggkVLVHC~aGvSRSatVViAYLM~~~g~S 230 (613)
..+.+|+|+|..|. ||.. ++.+| +..|.+
T Consensus 54 ~~~~~ivv~c~~g~-~s~~-~~~~l-~~~G~~ 82 (96)
T cd01529 54 GRATRYVLTCDGSL-LARF-AAQEL-LALGGK 82 (96)
T ss_pred CCCCCEEEEeCChH-HHHH-HHHHH-HHcCCC
Confidence 45789999998774 7744 34444 455653
No 101
>PRK14118 gpmA phosphoglyceromutase; Provisional
Probab=23.45 E-value=1.6e+02 Score=29.72 Aligned_cols=51 Identities=25% Similarity=0.348 Sum_probs=34.7
Q ss_pred CCCChHHHHHHHHHHHHHHHH----cCCeEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHH
Q 007206 179 PSEDITSILYDVFDYFEDVRE----QGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAF 235 (613)
Q Consensus 179 ~~~~l~~~~~~av~fI~~al~----~ggkVLVHC~aGvSRSatVViAYLM~~~g~Sl~eAl 235 (613)
..+.+......+..++++.+. .+++|||-|++|+-|+ ++++++ |++.++..
T Consensus 147 ~GEs~~~~~~Rv~~~l~~~~~~~~~~~~~vlvVsHggvir~---ll~~~l---~~~~~~~~ 201 (227)
T PRK14118 147 DAENLKVTLERVLPFWEDQIAPALLSGKRVLVAAHGNSLRA---LAKHIE---GISDADIM 201 (227)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhhhcCCCeEEEEeCHHHHHH---HHHHHh---CCCHHHHh
Confidence 356777778888888877543 4689999999998765 333333 66666543
No 102
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=23.12 E-value=1.2e+02 Score=29.95 Aligned_cols=32 Identities=13% Similarity=0.183 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEEcCCCCchhHH
Q 007206 183 ITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTS 217 (613)
Q Consensus 183 l~~~~~~av~fI~~al~~ggkVLVHC~aGvSRSat 217 (613)
+...+..+.+.|-+++.+|+|||++ |.|+|++
T Consensus 23 l~~~I~~aa~~i~~~l~~G~Kvl~c---GNGgSaa 54 (176)
T COG0279 23 LIEAIERAAQLLVQSLLNGNKVLAC---GNGGSAA 54 (176)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEEEE---CCCcchh
Confidence 3455677788888889999999875 6777755
No 103
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=22.77 E-value=96 Score=27.86 Aligned_cols=28 Identities=21% Similarity=0.385 Sum_probs=19.0
Q ss_pred HcCCeEEEEcCCCCchhHHHHHHHHHHhcCC
Q 007206 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (613)
Q Consensus 199 ~~ggkVLVHC~aGvSRSatVViAYLM~~~g~ 229 (613)
..+++|+|+|..|. ||...+ ..+...|+
T Consensus 70 ~~~~~ivv~C~~G~-rs~~aa--~~L~~~G~ 97 (122)
T cd01526 70 DKDSPIYVVCRRGN-DSQTAV--RKLKELGL 97 (122)
T ss_pred CCCCcEEEECCCCC-cHHHHH--HHHHHcCC
Confidence 45789999999996 875332 33445566
No 104
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=22.51 E-value=47 Score=40.85 Aligned_cols=158 Identities=12% Similarity=0.149 Sum_probs=0.0
Q ss_pred ccCCCCCChHHHHHHHHHHHHHHHHcC--CeEEEEcCCCCchhHHHHHHH--HHHhcCCCHHHHHHHHHHhcCcccCCcc
Q 007206 175 LQDSPSEDITSILYDVFDYFEDVREQG--GRVFVHCCQGVSRSTSLVIAY--LMWREGQSFEDAFQYVKAARGVTNPNMG 250 (613)
Q Consensus 175 I~D~~~~~l~~~~~~av~fI~~al~~g--gkVLVHC~aGvSRSatVViAY--LM~~~g~Sl~eAl~~Vr~~Rp~i~PN~~ 250 (613)
+..+....+.-.++-|++-|.+..... |.||-|| +|+|.+--||... +|......+..|+ +|.|-..
T Consensus 669 LKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHc-MGLGKTlQVvtflhTvL~c~klg~ktaL--------vV~PlNt 739 (1567)
T KOG1015|consen 669 LKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHC-MGLGKTLQVVTFLHTVLLCDKLGFKTAL--------VVCPLNT 739 (1567)
T ss_pred cCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHh-hcccceehhhHHHHHHHHhhccCCceEE--------EEcchHH
Q ss_pred hHHHHHHHHhhhcc-CCCCCcccceeeeecCCCCCCCccccccccCCCcccccCCCCeEEEecCCeeEEEeCCCCChhhH
Q 007206 251 FACQLLLCQKRVHA-MPASPNSMLRIYRIAPHSSYDPLHLVPKLLNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMMS 329 (613)
Q Consensus 251 F~~QL~~~Ek~l~~-~~aspss~~RLYRV~g~s~~~~~~lVpk~ev~~~~sSLnS~dvFIL~t~~~IYVW~Gk~ss~~er 329 (613)
...-..+|++=+.. ....+..|..|-.++ -+..-...-..=.++++||||-...-=-+=.|++-.
T Consensus 740 ~~NW~~EFekWm~~~e~~~~leV~eL~~vk----------r~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk---- 805 (1567)
T KOG1015|consen 740 ALNWMNEFEKWMEGLEDDEKLEVSELATVK----------RPEERSYMLQRWQEDGGVMIIGYDMYRNLAQGRNVK---- 805 (1567)
T ss_pred HHHHHHHHHHhcccccccccceeehhhhcc----------ChHHHHHHHHHHHhcCCEEEEehHHHHHHhcccchh----
Q ss_pred HHHHHHHHHHHHHhhcCCceEEecCCC
Q 007206 330 NRAREAANQVIRYEKAQGQITSIKEGE 356 (613)
Q Consensus 330 ~~a~~~A~~i~~~e~~~~~i~vV~EG~ 356 (613)
.-+..+..+....+++..++|++||.
T Consensus 806 -~rk~ke~f~k~lvdpGPD~vVCDE~H 831 (1567)
T KOG1015|consen 806 -SRKLKEIFNKALVDPGPDFVVCDEGH 831 (1567)
T ss_pred -hhHHHHHHHHhccCCCCCeEEecchh
No 105
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=22.23 E-value=1.1e+02 Score=25.54 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=19.1
Q ss_pred HHcCCeEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 007206 198 REQGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (613)
Q Consensus 198 l~~ggkVLVHC~aGvSRSatVViAYLM~~~g~S 230 (613)
+..+.+|+|+|..|. ||.. ++.+++..|..
T Consensus 53 ~~~~~~ivv~c~~g~-~s~~--a~~~l~~~G~~ 82 (96)
T cd01444 53 LDRDRPVVVYCYHGN-SSAQ--LAQALREAGFT 82 (96)
T ss_pred cCCCCCEEEEeCCCC-hHHH--HHHHHHHcCCc
Confidence 356789999999665 5433 34455555643
No 106
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=21.14 E-value=1.3e+02 Score=33.21 Aligned_cols=15 Identities=27% Similarity=0.567 Sum_probs=11.8
Q ss_pred HHcCCeEEEEcCCCC
Q 007206 198 REQGGRVFVHCCQGV 212 (613)
Q Consensus 198 l~~ggkVLVHC~aGv 212 (613)
+..|..||.||.+|-
T Consensus 164 I~dg~~ILThcnsg~ 178 (363)
T PRK05772 164 LNDGDTVLTQCNAGG 178 (363)
T ss_pred cCCCCEEEEecCCcc
Confidence 346789999998873
No 107
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=20.84 E-value=1.7e+02 Score=26.17 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=13.1
Q ss_pred cCCeEEEEcCCCCchhHHH
Q 007206 200 QGGRVFVHCCQGVSRSTSL 218 (613)
Q Consensus 200 ~ggkVLVHC~aGvSRSatV 218 (613)
.+.+|+|+|..|. ||...
T Consensus 59 ~~~~IVlyC~~G~-rS~~a 76 (104)
T PRK10287 59 KNDTVKLYCNAGR-QSGQA 76 (104)
T ss_pred CCCeEEEEeCCCh-HHHHH
Confidence 4578999999883 65444
No 108
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=20.51 E-value=1.2e+02 Score=26.90 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=17.4
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHhcCC
Q 007206 200 QGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (613)
Q Consensus 200 ~ggkVLVHC~aGvSRSatVViAYLM~~~g~ 229 (613)
.+.+|+|+|..|. ||... +. ++...|+
T Consensus 57 ~~~~vvlyC~~G~-rS~~a-a~-~L~~~G~ 83 (101)
T TIGR02981 57 KNDTVKLYCNAGR-QSGMA-KD-ILLDMGY 83 (101)
T ss_pred CCCeEEEEeCCCH-HHHHH-HH-HHHHcCC
Confidence 4578999999985 76544 23 3334454
No 109
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=20.43 E-value=2.1e+02 Score=33.58 Aligned_cols=45 Identities=22% Similarity=0.261 Sum_probs=34.3
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHH---hcCCCHHHHHHHHHHhcCcccCCc
Q 007206 202 GRVFVHCCQGVSRSTSLVIAYLMW---REGQSFEDAFQYVKAARGVTNPNM 249 (613)
Q Consensus 202 gkVLVHC~aGvSRSatVViAYLM~---~~g~Sl~eAl~~Vr~~Rp~i~PN~ 249 (613)
.++.|||.-|. +++++++||+ ..+++.++|++.++.+--....|.
T Consensus 161 ~pdviH~ND~H---tal~~~el~r~l~~~~~~~~~a~~~~~~~~vfTiHt~ 208 (601)
T TIGR02094 161 DPDVYHLNEGH---AAFVTLERIRELIAQGLSFEEAWEAVRKSSLFTTHTP 208 (601)
T ss_pred CceEEEeCCch---HHHHHHHHHHHHHHcCCCHHHHHHhcCCeEEEeCCCc
Confidence 78999999998 6999999875 358899999987775543333443
Done!