BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007207
(613 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3K6S|A Chain A, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|C Chain C, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|E Chain E, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|G Chain G, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K71|A Chain A, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|C Chain C, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|E Chain E, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|G Chain G, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K72|A Chain A, Structure Of Integrin Alphax Beta2
pdb|3K72|C Chain C, Structure Of Integrin Alphax Beta2
Length = 1095
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 70/181 (38%), Gaps = 23/181 (12%)
Query: 276 NIDFDFSYTVSPSHIFGGVLLQSPSLHDVDQREMF----CMYLLPGTAKSRKVF------ 325
++ + T SPS + L P++H R M+ C L P R
Sbjct: 72 SLGLSLASTTSPSQL----LACGPTVHHECGRNMYLTGLCFLLGPTQLTQRLPVSRQECP 127
Query: 326 --KKDVIFIVDISGSMQGKPLEDTKNALAVALSKLD-PGDSFNIVAFNGETYLFSTSMEL 382
++D++F++D SGS+ + N + +S+ P F+++ F+ + T E
Sbjct: 128 RQEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFEEF 187
Query: 383 ATKEA----VERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVED 438
+ HQ G + A N+ L A R + I+ ++TDG E
Sbjct: 188 RRSSNPLSLLASVHQLQGFTYTATAIQNVVHRLFHA--SYGARRDAAKILIVITDGKKEG 245
Query: 439 E 439
+
Sbjct: 246 D 246
>pdb|1N3Y|A Chain A, Crystal Structure Of The Alpha-X Beta2 Integrin I Domain
Length = 198
Score = 33.1 bits (74), Expect = 0.49, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 7/119 (5%)
Query: 326 KKDVIFIVDISGSMQGKPLEDTKNALAVALSKLD-PGDSFNIVAFNGETYLFSTSMELAT 384
++D++F++D SGS+ + N + +S+ P F+++ F+ + T E
Sbjct: 9 EQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFEEFRR 68
Query: 385 K----EAVERAHQWIGINFIAGGSTNICAPLTKAVEMLTNSRGSIPIIFLVTDGAVEDE 439
+ HQ G + A N+ L A R + I+ ++TDG E +
Sbjct: 69 SSNPLSLLASVHQLQGFTYTATAIQNVVHRLFHA--SYGARRDAAKILIVITDGKKEGD 125
>pdb|4HQL|A Chain A, Crystal Structure Of Magnesium-Loaded Plasmodium Vivax
Trap Protein
pdb|4HQL|B Chain B, Crystal Structure Of Magnesium-Loaded Plasmodium Vivax
Trap Protein
pdb|4HQN|A Chain A, Crystal Structure Of Manganese-Loaded Plasmodium Vivax
Trap Protein
pdb|4HQN|B Chain B, Crystal Structure Of Manganese-Loaded Plasmodium Vivax
Trap Protein
pdb|4HQO|A Chain A, Crystal Structure Of Plasmodium Vivax Trap Protein
pdb|4HQO|B Chain B, Crystal Structure Of Plasmodium Vivax Trap Protein
Length = 266
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 74/167 (44%), Gaps = 27/167 (16%)
Query: 328 DVIFIVDISGSMQGKPLEDTK-----NALAVALSKLDPGDSFNIV-----AFNGETYLFS 377
D+ +VD SGS+ G P TK N L +LS D+ N+ ++ E
Sbjct: 20 DLYLLVDGSGSI-GYPNWITKVIPMLNGLINSLSL--SRDTINLYMNLFGSYTTELIRLG 76
Query: 378 TSMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAVEMLT---NSRGSIPIIFLVTDG 434
+ + ++A+ + + + + G+T++ A L + + L N +I ++ L+TDG
Sbjct: 77 SGQSIDKRQALSKVTE-LRKTYTPYGTTSMTAALDEVQKHLNDRVNREKAIQLVILMTDG 135
Query: 435 AVEDER---QICDAMKSRLTNGGSICPRIYTFGIGSYCNHYFLRMLA 478
+ ++ + +K R R+ GIG NH F R++A
Sbjct: 136 VPNSKYRALEVANKLKQRNV-------RLAVIGIGQGINHQFNRLIA 175
>pdb|1VRN|C Chain C, Photosynthetic Reaction Center Blastochloris Viridis
(Atcc)
Length = 332
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 6/106 (5%)
Query: 310 FCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAF 369
F M+L + +V + + +V +S + +PL D A+ +S D +
Sbjct: 190 FTMFLA-NDKRQVRVVPQTALPLVGVSRGKERRPLSDAYATFALMMSISDSLGTNCTFCH 248
Query: 370 NGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAV 415
N +T+ K +RA W GI + + N APL ++
Sbjct: 249 NAQTF-----ESWGKKSTPQRAIAWWGIRMVRDLNMNYLAPLNASL 289
>pdb|3L7X|A Chain A, The Crystal Structure Of Smu.412c From Streptococcus
Mutans Ua159
Length = 173
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 27/104 (25%)
Query: 292 GGVLLQSPSLHDVDQREMFCMYLLPGTAKSRKVFK-KDVIFIVDISGSMQGK----PLED 346
GG + S++D +FC ++ G S KV++ +DV+ +DIS + +G P E
Sbjct: 26 GGQQMGRGSMNDC----LFCK-IVAGDIPSSKVYEDEDVLAFLDISQATKGHTLVIPKEH 80
Query: 347 TKNAL-----------------AVALSKLDPGDSFNIVAFNGET 373
+NAL A AL K D NI+ N ET
Sbjct: 81 VRNALEMTQTQAANLFARIPKIARALQKATKADGLNIINNNEET 124
>pdb|1PRC|C Chain C, Crystallographic Refinement At 2.3 Angstroms Resolution
And Refined Model Of The Photosynthetic Reaction Center
From Rhodopseudomonas Viridis
pdb|2PRC|C Chain C, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis (Ubiquinone-2 Complex)
pdb|3PRC|C Chain C, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis (Qb- Depleted)
pdb|5PRC|C Chain C, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis (Atrazine Complex)
pdb|6PRC|C Chain C, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis (Dg- 420314 (Triazine) Complex)
pdb|7PRC|C Chain C, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis (Dg- 420315 (Triazine) Complex)
pdb|1DXR|C Chain C, Photosynthetic Reaction Center From Rhodopseudomonas
Viridis - His L168 Phe Mutant (Terbutryn Complex)
pdb|1R2C|C Chain C, Photosynthetic Reaction Center Blastochloris Viridis
(Atcc)
pdb|2I5N|C Chain C, 1.96 A X-Ray Structure Of Photosynthetic Reaction Center
From Rhodopseudomonas Viridis:crystals Grown By
Microfluidic Technique
pdb|3D38|C Chain C, Crystal Structure Of New Trigonal Form Of Photosynthetic
Reaction Center From Blastochloris Viridis. Crystals
Grown In Microfluidics By Detergent Capture.
pdb|2WJM|C Chain C, Lipidic Sponge Phase Crystal Structure Of The
Photosynthetic Reaction Centre From Blastochloris
Viridis (Low Dose)
pdb|2WJN|C Chain C, Lipidic Sponge Phase Crystal Structure Of Photosynthetic
Reaction Centre From Blastochloris Viridis (High Dose)
pdb|3G7F|C Chain C, Crystal Structure Of Blastochloris Viridis Heterodimer
Mutant Reaction Center
pdb|2X5U|C Chain C, 80 Microsecond Laue Diffraction Snapshot From Crystals Of
A Photosynthetic Reaction Centre Without Illumination.
pdb|2X5V|C Chain C, 80 Microsecond Laue Diffraction Snapshot From Crystals Of
A Photosynthetic Reaction Centre 3 Millisecond Following
Photoactivation
pdb|4AC5|C Chain C, Lipidic Sponge Phase Crystal Structure Of The Bl. Viridis
Reaction Centre Solved Using Serial Femtosecond
Crystallography
Length = 336
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 6/106 (5%)
Query: 310 FCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAF 369
F M+L + +V + + +V +S + +PL D A+ +S D +
Sbjct: 190 FTMFLA-NDKRQVRVVPQTALPLVGVSRGKERRPLSDAYATFALMMSISDSLGTNCTFCH 248
Query: 370 NGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAV 415
N +T+ K +RA W GI + + N APL ++
Sbjct: 249 NAQTF-----ESWGKKSTPQRAIAWWGIRMVRDLNMNYLAPLNASL 289
>pdb|2JBL|C Chain C, Photosynthetic Reaction Center From Blastochloris Viridis
pdb|3T6E|C Chain C, Crystal Structure Of The Reaction Centre From
Blastochloris Viridis Strain Dsm 133 (Atcc 19567)
Substrain-94
Length = 356
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 6/106 (5%)
Query: 310 FCMYLLPGTAKSRKVFKKDVIFIVDISGSMQGKPLEDTKNALAVALSKLDPGDSFNIVAF 369
F M+L + +V + + +V +S + +PL D A+ +S D +
Sbjct: 210 FTMFLA-NDKRQVRVVPQTALPLVGVSRGKERRPLSDAYATFALMMSISDSLGTNCTFCH 268
Query: 370 NGETYLFSTSMELATKEAVERAHQWIGINFIAGGSTNICAPLTKAV 415
N +T+ K +RA W GI + + N APL ++
Sbjct: 269 NAQTF-----ESWGKKSTPQRAIAWWGIRMVRDLNMNYLAPLNASL 309
>pdb|2QGU|A Chain A, Three-Dimensional Structure Of The Phospholipid-Binding
Protein From Ralstonia Solanacearum Q8xv73_ralsq In
Complex With A Phospholipid At The Resolution 1.53 A.
Northeast Structural Genomics Consortium Target Rsr89
Length = 211
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 538 SPLIVSGRYQGKFPDTLKAKGFLGDLSNFVVELKLQLAK 576
S L +S Y+ +F D + +G +G L F+ E QLAK
Sbjct: 169 SGLWLSETYKNQFADVISKRGGVGGLVQFLDERNAQLAK 207
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,904,591
Number of Sequences: 62578
Number of extensions: 829443
Number of successful extensions: 1630
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1628
Number of HSP's gapped (non-prelim): 9
length of query: 613
length of database: 14,973,337
effective HSP length: 105
effective length of query: 508
effective length of database: 8,402,647
effective search space: 4268544676
effective search space used: 4268544676
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)